BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780567|ref|YP_003064980.1| hypothetical protein
CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62]
         (246 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040244|gb|ACT57040.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 246

 Score =  501 bits (1289), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60
           MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP
Sbjct: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD
Sbjct: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
           FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK
Sbjct: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK
Sbjct: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240

Query: 241 ETQQCD 246
           ETQQCD
Sbjct: 241 ETQQCD 246


>gi|315121761|ref|YP_004062250.1| hypothetical protein CKC_00055 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495163|gb|ADR51762.1| hypothetical protein CKC_00055 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 247

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/247 (74%), Positives = 210/247 (85%), Gaps = 2/247 (0%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLG-ISRDDLLVHSAIEQAVRLIDSW 59
           MN + + Y+   P K++ D+ K K EQLF SFPRC   I+RDDLLVH +IEQAVR+IDSW
Sbjct: 1   MNFITKGYNLVFPAKERVDRGK-KGEQLFLSFPRCFTKINRDDLLVHDSIEQAVRIIDSW 59

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSW S  +I VGPSGSGKSCLANIWS KS++ R S +A+ LDS LIDTRKP+LLED D  
Sbjct: 60  PSWISPTMIFVGPSGSGKSCLANIWSQKSKAQRLSGLARGLDSSLIDTRKPILLEDADRF 119

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           D NDT+LFHIINSIHQ+DSSLLMTARTFPVSW V LPDL SRLKAAT+VK+SLPDDDFLE
Sbjct: 120 DLNDTELFHIINSIHQHDSSLLMTARTFPVSWSVRLPDLRSRLKAATIVKMSLPDDDFLE 179

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           K IVKMFADRQIFID++LA YIVQRMERSLVFAEKLV++MD+LALSRG GITRSLA+EVL
Sbjct: 180 KAIVKMFADRQIFIDERLAFYIVQRMERSLVFAEKLVNRMDDLALSRGTGITRSLASEVL 239

Query: 240 KETQQCD 246
           +E Q+CD
Sbjct: 240 EEIQKCD 246


>gi|222085485|ref|YP_002544015.1| DNA replication initiation ATPase protein [Agrobacterium
           radiobacter K84]
 gi|221722933|gb|ACM26089.1| DNA replication initiation ATPase protein [Agrobacterium
           radiobacter K84]
          Length = 237

 Score =  241 bits (614), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 124/228 (54%), Positives = 158/228 (69%), Gaps = 1/228 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D +  D  +   EQL  +F       RDDLLV   +  AVR++DSWP WPS VVIL GP 
Sbjct: 3   DVKNADLRRKPAEQLPLAFTHDAASGRDDLLVADPLSAAVRIVDSWPQWPSPVVILAGPV 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LA+IW ++S +      A S D+ +I    PV+ ED+D L F+DT+LFH+INS+
Sbjct: 63  GSGKSHLASIWCERSGAVPIHPKAGS-DAAVIAANGPVVFEDVDRLGFDDTELFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +  + LLMT+R +P+SW V LPDL SRLKAATVV+I  PD++ L +VIVK+FADRQ++I
Sbjct: 122 RENGTGLLMTSRLWPMSWPVTLPDLRSRLKAATVVEIGEPDEELLSQVIVKLFADRQLYI 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           D KL  YIV RMERSL  A+ +VD++D LAL RG  ITR LAAEVL E
Sbjct: 182 DDKLVLYIVNRMERSLNAAQLIVDRLDRLALGRGTRITRILAAEVLNE 229


>gi|325292517|ref|YP_004278381.1| DNA replication initiation ATPase protein [Agrobacterium sp. H13-3]
 gi|325060370|gb|ADY64061.1| DNA replication initiation ATPase protein [Agrobacterium sp. H13-3]
          Length = 242

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 121/227 (53%), Positives = 157/227 (69%), Gaps = 1/227 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D+ KND  ++K EQL  +F       RDDLLV  +++ AV L+D WP+WPS VV+L GP 
Sbjct: 3   DQIKNDNARSKAEQLPLAFSHQSASGRDDLLVSDSLKAAVSLVDEWPNWPSPVVVLAGPP 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LANIW + S +      A    + L +T  PVL ED D   F+DT+LFH+INS+
Sbjct: 63  GSGKSHLANIWKNISSAQDIHPQAGVGAARLAET-GPVLFEDADRRGFDDTELFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            Q+ ++LLMT+R +P +W V LPDL SRLKA TVV+   PD+  L +V+VK+FADRQ+++
Sbjct: 122 RQHGTTLLMTSRQWPAAWPVTLPDLRSRLKAVTVVETGEPDEGLLAQVLVKLFADRQLYM 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           D KL  YIV RMERSL  A+ +VD++D LALSRG  ITR LAAEVL 
Sbjct: 182 DDKLIGYIVNRMERSLDTAQTIVDRIDRLALSRGTRITRPLAAEVLN 228


>gi|218675452|ref|ZP_03525121.1| hypothetical protein RetlG_30801 [Rhizobium etli GR56]
          Length = 237

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 155/231 (67%), Gaps = 2/231 (0%)

Query: 17  KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           KN  PK K  EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP GS
Sbjct: 5   KNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           GKS LA IW + S +        S D+ +     PVL ED D L F+D  LFH+INS+ +
Sbjct: 65  GKSHLARIWRELSGAVSIHPELGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           + +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++ID 
Sbjct: 124 HGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEGLLSQVIVKLFADRQLYIDD 183

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 184 KLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|327192210|gb|EGE59179.1| hypothetical protein RHECNPAF_237005 [Rhizobium etli CNPAF512]
          Length = 237

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 155/231 (67%), Gaps = 2/231 (0%)

Query: 17  KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           KN  PK K  EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP GS
Sbjct: 5   KNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           GKS LA IW + S +        S D+ +     PVL ED D L F+D  LFH+INS+ +
Sbjct: 65  GKSHLARIWRELSGAVSIHPELGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           + +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++ID 
Sbjct: 124 HGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYIDD 183

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 184 KLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|190891172|ref|YP_001977714.1| hypothetical protein RHECIAT_CH0001558 [Rhizobium etli CIAT 652]
 gi|190696451|gb|ACE90536.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 237

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 155/231 (67%), Gaps = 2/231 (0%)

Query: 17  KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           KN  PK K  EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP GS
Sbjct: 5   KNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           GKS LA IW + S +        S D+ +     PVL ED D L F+D  LFH+INS+ +
Sbjct: 65  GKSHLARIWRELSGAVDIRPDLGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           + +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++ID 
Sbjct: 124 HGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYIDD 183

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 184 KLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|209548700|ref|YP_002280617.1| hypothetical protein Rleg2_1097 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534456|gb|ACI54391.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 237

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 155/231 (67%), Gaps = 2/231 (0%)

Query: 17  KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           KN  PK K  EQL   F      SRDDLL+   +  AV ++D+WP+WPS VV+L GP GS
Sbjct: 5   KNADPKRKAGEQLPLVFSHDAASSRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           GKS LA IW + S +        S D+ +     PVL ED D L F+D  LFH+INS+ +
Sbjct: 65  GKSHLARIWRELSGAVDIHPELGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++ID 
Sbjct: 124 NGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYIDD 183

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           KL  YIV RMERSL  A+ +V+++D LALSRG  ITRS+AAEVL E    +
Sbjct: 184 KLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSMAAEVLNELGNSE 234


>gi|86357128|ref|YP_469020.1| hypothetical protein RHE_CH01490 [Rhizobium etli CFN 42]
 gi|86281230|gb|ABC90293.1| putative DNA replication initiation ATPase protein [Rhizobium etli
           CFN 42]
          Length = 237

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 121/231 (52%), Positives = 155/231 (67%), Gaps = 2/231 (0%)

Query: 17  KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           KN  PK K  EQL  +F       RDDLL+   +  AV ++D+WP+WPS VV+L GP GS
Sbjct: 5   KNADPKRKAGEQLPLAFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           GKS LA IW + S +        S D+ +     PVL ED D L F+D  LFH+INS+ +
Sbjct: 65  GKSHLARIWQELSGAVSIHPGLGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             +SLL+T+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++ID 
Sbjct: 124 NATSLLITSRLWPISWPVLLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYIDD 183

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           KL  YIV RMERSL  A+ +V+++D LALSRG  ITR+LAAEVL E    +
Sbjct: 184 KLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRALAAEVLNELGNSE 234


>gi|241203978|ref|YP_002975074.1| hypothetical protein Rleg_1243 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857868|gb|ACS55535.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 237

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 154/231 (66%), Gaps = 2/231 (0%)

Query: 17  KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           KN  PK K  EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP GS
Sbjct: 5   KNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           GKS LA IW + S +        S D+ +     PVL ED D L F+D  LFH+INS+ +
Sbjct: 65  GKSHLARIWRELSGAVDIHPELGS-DAAIAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++ID 
Sbjct: 124 NGTSLLMTSRLWPMSWPVLLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYIDD 183

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 184 KLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|116251364|ref|YP_767202.1| hypothetical protein RL1598 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256012|emb|CAK07093.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 237

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 154/231 (66%), Gaps = 2/231 (0%)

Query: 17  KNDQPK-NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           KN  PK N  EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP GS
Sbjct: 5   KNADPKRNAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           GKS LA IW + S +        S D+ +     PVL ED D L F+D  LFH+INS+ +
Sbjct: 65  GKSHLARIWRELSGAVDIHPELGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++ID 
Sbjct: 124 NGTSLLMTSRLWPMSWPVLLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYIDD 183

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 184 KLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|15964939|ref|NP_385292.1| hypothetical protein SMc00617 [Sinorhizobium meliloti 1021]
 gi|307301009|ref|ZP_07580778.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|307317743|ref|ZP_07597181.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|15074118|emb|CAC45765.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306896505|gb|EFN27253.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306903964|gb|EFN34550.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 229

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 113/220 (51%), Positives = 153/220 (69%), Gaps = 1/220 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           ++  EQL   F       RDDLLV   +  A+ ++D WP+WPS VVI+ GP GSGKS LA
Sbjct: 3   RHLSEQLPLVFGHAPATGRDDLLVSDRLSAAISIVDHWPAWPSPVVIICGPVGSGKSHLA 62

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
            IW +K+R+      A S ++  I   KPVL ED D   F+D  LFH+INS+ Q  ++LL
Sbjct: 63  GIWREKARAEPIHPFAGS-NAADIAAEKPVLFEDADRQGFDDAALFHVINSVRQNGTALL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT+R +P+SW V LPDL SRLKAATVV+I  PDD+ L +V+ K+FADRQ+ +D++L  Y+
Sbjct: 122 MTSRLWPMSWPVGLPDLKSRLKAATVVEIGEPDDELLVQVLTKLFADRQLLVDERLVGYV 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           V RMERSL  A+ +V+++D+LAL+RG   TR+LAAEVL+E
Sbjct: 182 VARMERSLEAAQTIVERIDHLALARGTRPTRALAAEVLEE 221


>gi|227821508|ref|YP_002825478.1| hypothetical protein NGR_c09350 [Sinorhizobium fredii NGR234]
 gi|227340507|gb|ACP24725.1| chromosomal replication initiator, DnaA [Sinorhizobium fredii
           NGR234]
          Length = 229

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 112/220 (50%), Positives = 154/220 (70%), Gaps = 1/220 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +   EQL   F       R+DLLV   +  A+ ++D WP WPS VVI+ GP GSGKS LA
Sbjct: 3   RRPNEQLPLVFGHDPATGREDLLVSDRLSAAIAIVDHWPEWPSPVVIIAGPVGSGKSHLA 62

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
           +IW ++S +     +A S ++  I   KPVL ED+D   F+DT LFH+INS+ Q  ++LL
Sbjct: 63  SIWRERSDAVAIHPVAGS-NAADIAASKPVLFEDVDRQGFDDTALFHVINSVRQNGTALL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT+R +P+SW V LPDL SRLKAATVV+I  PDD+ L +V+ K+FADRQ+ +D++  AYI
Sbjct: 122 MTSRLWPMSWPVALPDLKSRLKAATVVEIGEPDDELLTQVLFKLFADRQLLVDERFVAYI 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           V RMERSL  A+ +V+++D+ AL+RG  +TR+LAAEVL+E
Sbjct: 182 VNRMERSLEAAQTIVERLDHSALARGTRLTRALAAEVLEE 221


>gi|15888480|ref|NP_354161.1| hypothetical protein Atu1143 [Agrobacterium tumefaciens str. C58]
 gi|15156178|gb|AAK86946.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 242

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/227 (50%), Positives = 155/227 (68%), Gaps = 1/227 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D+ K D  ++K EQL  +F       R+DLLV +++  AV L+D WP+WPS VV+L GP 
Sbjct: 3   DQIKTDNARSKAEQLPLAFSHQSASGREDLLVSASLAAAVSLVDEWPNWPSPVVVLAGPP 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LANIW + S +      A +  +   +T  PVL ED D   F+DT+LFH+INS+
Sbjct: 63  GSGKSHLANIWKNISDARDIHPEAGADAARAAET-GPVLFEDADRRGFDDTELFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            Q+ ++LLMT+R +P +W V LPDL SRLKA TVV+   PD+  L +V+VK+FADRQ+++
Sbjct: 122 RQHGTTLLMTSRQWPAAWPVTLPDLRSRLKAVTVVETGEPDEGLLAQVLVKLFADRQLYM 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           D KL  YIV RMERSL  A+ +V+++D+LALSR   ITR L AEVL 
Sbjct: 182 DDKLIGYIVNRMERSLDTAQTIVEQIDHLALSRATRITRPLVAEVLN 228


>gi|150396018|ref|YP_001326485.1| hypothetical protein Smed_0794 [Sinorhizobium medicae WSM419]
 gi|150027533|gb|ABR59650.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 229

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 112/215 (52%), Positives = 151/215 (70%), Gaps = 1/215 (0%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL  +F       RDDLLV   +  A+ ++D WP+WPS VVI+ GP GSGKS LA IW 
Sbjct: 7   EQLPLAFGHAPATGRDDLLVSDRLSAAISIVDHWPAWPSPVVIICGPVGSGKSHLAGIWR 66

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
           +K+ +     +A S D+  I   KPVL ED D   F++  LFH+INS+ Q  ++LLMT+R
Sbjct: 67  EKAGAEPIHPVAGS-DAADIAAEKPVLFEDADRQGFDEAALFHVINSVRQNGTALLMTSR 125

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
            +P+SW V LPDL SRLKAATVV+I  PDD+ L +V+ K+FADRQ+F+D++L  YIV RM
Sbjct: 126 LWPMSWPVELPDLKSRLKAATVVEIGEPDDELLMQVLTKLFADRQLFVDERLIGYIVARM 185

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ERSL  A+ +V+++D+LAL+R    TR+LAAEVL+
Sbjct: 186 ERSLEAAQTIVERIDHLALARATRPTRALAAEVLE 220


>gi|218462578|ref|ZP_03502669.1| hypothetical protein RetlK5_25345 [Rhizobium etli Kim 5]
          Length = 237

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/225 (52%), Positives = 149/225 (66%), Gaps = 1/225 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +   EQL   F       RDDLL+   +  AV ++D+WP WPS VV+L GP GSGKS LA
Sbjct: 11  RKAAEQLSLLFSHDAASGRDDLLISERLAAAVSIVDAWPEWPSPVVVLAGPVGSGKSHLA 70

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
            IWS+ S +        S D+ +     PVL ED D   F+D  LFH+INS+ +  +SLL
Sbjct: 71  RIWSELSGAVSIHPELGS-DAAVAAAAGPVLFEDADRQGFDDNALFHVINSVRENGTSLL 129

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++ID KL  YI
Sbjct: 130 ITSRLWPMSWPVQLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYIDDKLVLYI 189

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           V RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 190 VNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|222148179|ref|YP_002549136.1| hypothetical protein Avi_1578 [Agrobacterium vitis S4]
 gi|221735167|gb|ACM36130.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 240

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/214 (51%), Positives = 152/214 (71%), Gaps = 1/214 (0%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL  +        RDDLLV   +  AV ++D+WP+WPS VVIL GP GSGKS LA IW 
Sbjct: 20  EQLPLALGHRPASGRDDLLVSGRLAAAVSVVDAWPNWPSPVVILSGPQGSGKSHLAEIWR 79

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
            +S +     ++ + D+ +  +R  VL ED D  DF++ +LFH+INS+ Q+ +SLL+T+R
Sbjct: 80  TQSGAVDILPLSGA-DASMTASRGAVLFEDADRADFDEVELFHVINSVKQHGTSLLITSR 138

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
           T+P+SW V L DL SRLKAAT+V+I  PD+  L +VIVK+FADRQ+ ID+++  YIVQRM
Sbjct: 139 TWPLSWPVKLADLRSRLKAATLVEIGEPDEALLSQVIVKLFADRQLAIDERVVDYIVQRM 198

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           ERSL  A+ +V+++D LAL+R   I+R+LAAEVL
Sbjct: 199 ERSLAAAQAVVEQLDRLALARRAKISRALAAEVL 232


>gi|163759173|ref|ZP_02166259.1| hypothetical protein HPDFL43_05395 [Hoeflea phototrophica DFL-43]
 gi|162283577|gb|EDQ33862.1| hypothetical protein HPDFL43_05395 [Hoeflea phototrophica DFL-43]
          Length = 235

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 143/206 (69%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL  +F       RDDL+V  ++  AV +ID WP WPS VVIL GP+GSGKS LA+IW+
Sbjct: 9   QQLPLAFEHDPASGRDDLIVSESVGGAVTMIDRWPEWPSPVVILAGPTGSGKSHLASIWA 68

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
           D++ + R +  A++ ++I      PVL+ED+D   +++T LFH+IN++  + ++ LMTAR
Sbjct: 69  DRTGAHRVNLGARANEAIAAAASGPVLIEDVDRTAYDETALFHLINAVRSHGATALMTAR 128

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
            FP  W V LPDL SRLKAATVV+I  PD++ L +V+VK+FADRQ+ +D ++  ++V RM
Sbjct: 129 QFPAGWNVALPDLASRLKAATVVEIGEPDEELLAQVMVKLFADRQLNVDDRIVRWLVARM 188

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGIT 231
           ERSL     +VD +D LAL+RG  IT
Sbjct: 189 ERSLAAVRHIVDGLDQLALARGSKIT 214


>gi|260463359|ref|ZP_05811560.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030949|gb|EEW32224.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 246

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/231 (45%), Positives = 145/231 (62%), Gaps = 8/231 (3%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           Q+ D P+    QL        G SRD+L+V     QA  L+D WP WPS VV+L GP+GS
Sbjct: 16  QRTDPPR----QLPLDLGHGTGYSRDELVVSGTNSQAAALVDRWPDWPSPVVVLAGPAGS 71

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           GK+ LA IW   + +    +  +  DSI     +P L++D+D    ++  LFH+IN++  
Sbjct: 72  GKTHLAAIWRAHANAVAV-DAGRIGDSIANLGARPALIDDVDAGAVDEQGLFHLINAVRG 130

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             S+LL+TAR FP +WGV LPDL SRLKAA  V+I  PDD  L  VI K+FADRQ+ ++ 
Sbjct: 131 AGSTLLLTARRFPAAWGVSLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQVEVEP 190

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE---VLKETQ 243
            +  Y+V+R+ERSL  A ++V+++D +AL R M ITR+LAAE   V+ E Q
Sbjct: 191 HVVQYLVRRIERSLATAMRVVERLDRIALERKMPITRALAAETVSVMDEGQ 241


>gi|13476596|ref|NP_108166.1| hypothetical protein mlr7968 [Mesorhizobium loti MAFF303099]
 gi|14027358|dbj|BAB53627.1| mlr7968 [Mesorhizobium loti MAFF303099]
          Length = 234

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 103/225 (45%), Positives = 145/225 (64%), Gaps = 7/225 (3%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           Q+ D P+    QL        G SRD+L+V     QA  L+D WP WPS VV+L GP+GS
Sbjct: 4   QRTDPPR----QLPLDLGHGTGYSRDELVVSGTNNQAAALVDRWPDWPSPVVVLAGPAGS 59

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSL-DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH 134
           GK+ LA IW  ++R+   +  A+ + DSI     +P L++D+D    ++  LFH+IN++ 
Sbjct: 60  GKTHLAAIW--RARANAVAVDARRIGDSIAGLGARPALIDDVDAGAVDEQGLFHLINAVR 117

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
              S+LL+TAR FP +WGV LPDL SRLKAA  V+I  PDD  L  VI K+FADRQ+ ++
Sbjct: 118 GAGSTLLLTARRFPSAWGVSLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQVEVE 177

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             +  Y+V+R+ERSL  A ++V+++D  AL R M ITR+LAAE +
Sbjct: 178 PHVVQYLVRRIERSLATAMRVVERLDRTALERKMPITRALAAETV 222


>gi|319784359|ref|YP_004143835.1| Chromosomal replication initiator DnaA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170247|gb|ADV13785.1| Chromosomal replication initiator DnaA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 234

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 101/220 (45%), Positives = 138/220 (62%), Gaps = 1/220 (0%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           QP +   QL        G SRD+L+V     QAV L+D WP WPS VV+L GP+GSGK+ 
Sbjct: 4   QPTDPPRQLPLDLGHGTGYSRDELVVSGTNNQAVALVDRWPDWPSPVVVLAGPAGSGKTH 63

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS 139
           LA+IW  ++ +          DSI     +P L++D+D    ++  LFH+IN++    S 
Sbjct: 64  LASIWRARANAAAVDARRIG-DSIANLGARPALIDDVDTGTVDEQGLFHLINAVRGAGSQ 122

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LL+TAR FP +WGV LPDL SRLKAA  V+I  PDD  L  VI K+FADRQI ++  +  
Sbjct: 123 LLLTARRFPSAWGVGLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQIEVEPHVVQ 182

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           Y+V+R+ERSL  A ++V+++D  AL R   ITR+LAAE +
Sbjct: 183 YLVRRIERSLATAMRVVERLDRTALERKTPITRALAAETV 222


>gi|110634313|ref|YP_674521.1| hypothetical protein Meso_1963 [Mesorhizobium sp. BNC1]
 gi|110285297|gb|ABG63356.1| regulatory inactivation of DnaA Hda protein [Chelativorans sp.
           BNC1]
          Length = 233

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 142/214 (66%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL        G SR+DL+V  A E AV L++SWP WP+ +V+L GP+GSGK+ LA+IW D
Sbjct: 9   QLPLDLAHTEGRSREDLVVTPANELAVALVESWPDWPAPIVVLAGPAGSGKTHLADIWCD 68

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
           +S +   S  A   +++      P+L++D D    ++T LFH+IN +    + LL+TAR 
Sbjct: 69  QSGAFPVSATAIETEAMAAAEHGPILIDDADSPLLDETGLFHLINMVRGSHTHLLLTARH 128

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P +WGV LPDL SRLKAA  V+I  PDD  L  V +K+FADRQ+ ++  +  ++++RME
Sbjct: 129 LPSAWGVKLPDLLSRLKAAAAVEIREPDDMLLTGVFIKLFADRQVAVEPHVVQFMLRRME 188

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           RSL  A ++V+++D +AL R + I+R+LAAE+L+
Sbjct: 189 RSLSAARRIVERLDRVALERKIRISRTLAAEILE 222


>gi|239831548|ref|ZP_04679877.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|239823815|gb|EEQ95383.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 246

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 101/230 (43%), Positives = 147/230 (63%), Gaps = 5/230 (2%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +    Q+  +     G  R+DL+V  +   AV LID WP+W S V IL GP+GSGK+ LA
Sbjct: 16  REAPRQIPLNLEHQPGYHREDLIVTGSNRAAVDLIDRWPNWLSPVTILAGPTGSGKTHLA 75

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS--- 138
            IW   + +      + + +++      PVL++DI    F++T LFH+INS+ Q  +   
Sbjct: 76  EIWRAGTGALLVDPSSITEEAVNGAAEYPVLIDDIGATPFDETGLFHLINSVRQNAAQGI 135

Query: 139 --SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
             SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  
Sbjct: 136 GPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDLLLSGVIHKLFADRQVSVEPH 195

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + AY+V R+ERSL+ A ++VDK+D  AL +   ITR+LAA+VL +++Q +
Sbjct: 196 VVAYLVSRIERSLLSAIRIVDKLDRAALEQKSRITRTLAAQVLADSEQPE 245


>gi|153009901|ref|YP_001371116.1| hypothetical protein Oant_2574 [Ochrobactrum anthropi ATCC 49188]
 gi|151561789|gb|ABS15287.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
          Length = 232

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/230 (43%), Positives = 144/230 (62%), Gaps = 5/230 (2%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +    Q+  +     G  R+D++V  +   AV LID WP+W S V IL GP+GSGK+ LA
Sbjct: 2   REAPRQIPLNLEHQPGYHREDMIVTGSNRAAVDLIDRWPNWLSPVTILAGPTGSGKTHLA 61

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-----Y 136
            IW   + +        + +++      PVL++DI    F++T LFH+INS+ Q      
Sbjct: 62  EIWRAGTGALLVDPTNITEEAVNGAAEYPVLIDDIGAAPFDETGLFHLINSVRQNAAQGL 121

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
             SLLMT+R +P +W V LPDL SRLKAATVV+IS PDD  L  VI K+FADRQ+ ++  
Sbjct: 122 GPSLLMTSRLWPANWNVKLPDLASRLKAATVVEISEPDDLLLSGVIHKLFADRQVSVEPH 181

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + AY+V R+ERSL+ A ++VDK+D  AL +   ITR+LAA+VL  ++Q +
Sbjct: 182 VVAYLVSRIERSLLSAIQIVDKLDRAALEQKSRITRTLAAQVLAGSEQPE 231


>gi|163842986|ref|YP_001627390.1| hypothetical protein BSUIS_A0745 [Brucella suis ATCC 23445]
 gi|163673709|gb|ABY37820.1| Hypothetical protein BSUIS_A0745 [Brucella suis ATCC 23445]
          Length = 231

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK
Sbjct: 2   HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 57

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI +  +++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 58  THLAEIWRSGTDALLLDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 115

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|23501601|ref|NP_697728.1| hypothetical protein BR0714 [Brucella suis 1330]
 gi|23347516|gb|AAN29643.1| conserved hypothetical protein [Brucella suis 1330]
          Length = 231

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK
Sbjct: 2   HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 57

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI +  +++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 58  THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAQAFDETGLFHLINSVRQ 115

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|306842022|ref|ZP_07474695.1| ATP/GTP-binding protein [Brucella sp. BO2]
 gi|306287863|gb|EFM59283.1| ATP/GTP-binding protein [Brucella sp. BO2]
          Length = 235

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK
Sbjct: 6   HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 61

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI +  +++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 62  THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 119

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 120 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 179

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 180 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234


>gi|260563758|ref|ZP_05834244.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M]
 gi|260566710|ref|ZP_05837180.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40]
 gi|261213721|ref|ZP_05928002.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|261218919|ref|ZP_05933200.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261221913|ref|ZP_05936194.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314524|ref|ZP_05953721.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317373|ref|ZP_05956570.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321582|ref|ZP_05960779.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261754699|ref|ZP_05998408.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|265983834|ref|ZP_06096569.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|265988410|ref|ZP_06100967.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265990825|ref|ZP_06103382.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265997876|ref|ZP_06110433.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|265999530|ref|ZP_05466791.2| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260153774|gb|EEW88866.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156228|gb|EEW91308.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40]
 gi|260915328|gb|EEX82189.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|260920497|gb|EEX87150.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260924008|gb|EEX90576.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294272|gb|EEX97768.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296596|gb|EEY00093.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261303550|gb|EEY07047.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261744452|gb|EEY32378.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262552344|gb|EEZ08334.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|263001609|gb|EEZ14184.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094519|gb|EEZ18328.1| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660607|gb|EEZ30868.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|264662426|gb|EEZ32687.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|326538455|gb|ADZ86670.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 235

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK
Sbjct: 6   HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 61

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI +  +++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 62  THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 119

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 120 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 179

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 180 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234


>gi|225627210|ref|ZP_03785248.1| ATP/GTP-binding protein [Brucella ceti str. Cudo]
 gi|261757927|ref|ZP_06001636.1| ATP/GTP-binding protein [Brucella sp. F5/99]
 gi|225618045|gb|EEH15089.1| ATP/GTP-binding protein [Brucella ceti str. Cudo]
 gi|261737911|gb|EEY25907.1| ATP/GTP-binding protein [Brucella sp. F5/99]
          Length = 236

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK
Sbjct: 7   HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 62

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI +  +++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 63  THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 120

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 121 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 180

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 181 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 235


>gi|17987521|ref|NP_540155.1| hypothetical protein BMEI1238 [Brucella melitensis bv. 1 str. 16M]
 gi|148559701|ref|YP_001258694.1| hypothetical protein BOV_0704 [Brucella ovis ATCC 25840]
 gi|161618684|ref|YP_001592571.1| hypothetical protein BCAN_A0727 [Brucella canis ATCC 23365]
 gi|225852234|ref|YP_002732467.1| hypothetical protein BMEA_A0751 [Brucella melitensis ATCC 23457]
 gi|254688983|ref|ZP_05152237.1| ATP/GTP-binding protein [Brucella abortus bv. 6 str. 870]
 gi|254693465|ref|ZP_05155293.1| ATP/GTP-binding protein [Brucella abortus bv. 3 str. Tulya]
 gi|254697117|ref|ZP_05158945.1| ATP/GTP-binding protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704042|ref|ZP_05165870.1| ATP/GTP-binding protein [Brucella suis bv. 3 str. 686]
 gi|254707056|ref|ZP_05168884.1| ATP/GTP-binding protein [Brucella pinnipedialis M163/99/10]
 gi|254709834|ref|ZP_05171645.1| ATP/GTP-binding protein [Brucella pinnipedialis B2/94]
 gi|254713836|ref|ZP_05175647.1| ATP/GTP-binding protein [Brucella ceti M644/93/1]
 gi|254717106|ref|ZP_05178917.1| ATP/GTP-binding protein [Brucella ceti M13/05/1]
 gi|254718849|ref|ZP_05180660.1| ATP/GTP-binding protein [Brucella sp. 83/13]
 gi|254730013|ref|ZP_05188591.1| ATP/GTP-binding protein [Brucella abortus bv. 4 str. 292]
 gi|256031324|ref|ZP_05444938.1| ATP/GTP-binding protein [Brucella pinnipedialis M292/94/1]
 gi|256044405|ref|ZP_05447309.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256159444|ref|ZP_05457216.1| ATP/GTP-binding protein [Brucella ceti M490/95/1]
 gi|256254733|ref|ZP_05460269.1| ATP/GTP-binding protein [Brucella ceti B1/94]
 gi|256257231|ref|ZP_05462767.1| ATP/GTP-binding protein [Brucella abortus bv. 9 str. C68]
 gi|256369148|ref|YP_003106656.1| hypothetical protein BMI_I709 [Brucella microti CCM 4915]
 gi|260168462|ref|ZP_05755273.1| ATP/GTP-binding protein [Brucella sp. F5/99]
 gi|260757694|ref|ZP_05870042.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|306838771|ref|ZP_07471605.1| ATP/GTP-binding protein [Brucella sp. NF 2653]
 gi|306843674|ref|ZP_07476274.1| ATP/GTP-binding protein [Brucella sp. BO1]
 gi|17983222|gb|AAL52419.1| insertion sequence is21 putative ATP-binding protein [Brucella
           melitensis bv. 1 str. 16M]
 gi|148370958|gb|ABQ60937.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
 gi|161335495|gb|ABX61800.1| Hypothetical protein BCAN_A0727 [Brucella canis ATCC 23365]
 gi|225640599|gb|ACO00513.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|255999308|gb|ACU47707.1| hypothetical protein BMI_I709 [Brucella microti CCM 4915]
 gi|260668012|gb|EEX54952.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|306275984|gb|EFM57693.1| ATP/GTP-binding protein [Brucella sp. BO1]
 gi|306406173|gb|EFM62418.1| ATP/GTP-binding protein [Brucella sp. NF 2653]
 gi|326408735|gb|ADZ65800.1| ATP/GTP-binding protein [Brucella melitensis M28]
          Length = 231

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK
Sbjct: 2   HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 57

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI +  +++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 58  THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 115

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|261324830|ref|ZP_05964027.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261300810|gb|EEY04307.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 235

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK
Sbjct: 6   HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 61

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI ++  ++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 62  THLAEIWRSGTDALLVDPSNITEA--AVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 119

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 120 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDILLSGVIHKLFADRQ 179

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 180 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234


>gi|256060837|ref|ZP_05450997.1| ATP/GTP-binding protein [Brucella neotomae 5K33]
          Length = 231

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK
Sbjct: 2   HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 57

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI ++  ++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 58  THLAEIWRSGTDALLVDPSNITEA--AVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 115

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDILLSGVIHKLFADRQ 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|294852073|ref|ZP_06792746.1| hypothetical protein BAZG_00989 [Brucella sp. NVSL 07-0026]
 gi|294820662|gb|EFG37661.1| hypothetical protein BAZG_00989 [Brucella sp. NVSL 07-0026]
          Length = 236

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK
Sbjct: 7   HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 62

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI +  +++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 63  THLAEIWRSGTDALLVDPSNITE--EAVNSAAGRPVLIDNIGAEAFDETGLFHLINSVRQ 120

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 121 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 180

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 181 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 235


>gi|265994659|ref|ZP_06107216.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262765772|gb|EEZ11561.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 235

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK
Sbjct: 6   HDAPR----QIPLNLEYQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 61

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI +  +++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 62  THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 119

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 120 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 179

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 180 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234


>gi|256113248|ref|ZP_05454116.1| ATP/GTP-binding protein [Brucella melitensis bv. 3 str. Ether]
          Length = 231

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK
Sbjct: 2   HDAPR----QIPLNLEYQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 57

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI +  +++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 58  THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 115

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|254701495|ref|ZP_05163323.1| ATP/GTP-binding protein [Brucella suis bv. 5 str. 513]
          Length = 231

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/235 (42%), Positives = 152/235 (64%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W   V IL GP+G+GK
Sbjct: 2   HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLLPVTILAGPTGAGK 57

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI +  +++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 58  THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 115

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|261752040|ref|ZP_05995749.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261741793|gb|EEY29719.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
          Length = 235

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/235 (42%), Positives = 152/235 (64%), Gaps = 13/235 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +D P+    Q+  +     G +R+DL+V ++   AV LID WP+W   V IL GP+G+GK
Sbjct: 6   HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLLPVTILAGPTGAGK 61

Query: 78  SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           + LA IW   + +     SNI +  +++     +PVL+++I    F++T LFH+INS+ Q
Sbjct: 62  THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 119

Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           + +     SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ
Sbjct: 120 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 179

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++  + +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 180 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234


>gi|237815164|ref|ZP_04594162.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A]
 gi|260883502|ref|ZP_05895116.1| permease [Brucella abortus bv. 9 str. C68]
 gi|297248081|ref|ZP_06931799.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196]
 gi|237790001|gb|EEP64211.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A]
 gi|260873030|gb|EEX80099.1| permease [Brucella abortus bv. 9 str. C68]
 gi|297175250|gb|EFH34597.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196]
          Length = 658

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 146/217 (67%), Gaps = 9/217 (4%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF--S 94
           G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA IW   + +     S
Sbjct: 444 GYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAEIWRSGTDALLVDPS 503

Query: 95  NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-----SLLMTARTFPV 149
           NI +  +++     +PVL+++I    F++T LFH+INS+ Q+ +     SLLMT+R +P 
Sbjct: 504 NITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPGPSLLMTSRLWPA 561

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  + +Y+V RMERSL
Sbjct: 562 NWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHVVSYLVSRMERSL 621

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + A ++VD++D  AL +   ITR+LAA++L +  Q  
Sbjct: 622 LSAIQIVDRLDRAALEQKSRITRALAAQILADMGQAG 658


>gi|82699601|ref|YP_414175.1| ATP/GTP-binding protein [Brucella melitensis biovar Abortus 2308]
 gi|189023923|ref|YP_001934691.1| ATP/GTP-binding protein [Brucella abortus S19]
 gi|260545574|ref|ZP_05821315.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038]
 gi|260754474|ref|ZP_05866822.1| permease [Brucella abortus bv. 6 str. 870]
 gi|260761520|ref|ZP_05873863.1| permease [Brucella abortus bv. 2 str. 86/8/59]
 gi|82615702|emb|CAJ10689.1| ATP/GTP-binding site motif A (P-loop):Protein of unknown function
           UPF0118 [Brucella melitensis biovar Abortus 2308]
 gi|189019495|gb|ACD72217.1| ATP/GTP-binding protein [Brucella abortus S19]
 gi|260096981|gb|EEW80856.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038]
 gi|260671952|gb|EEX58773.1| permease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674582|gb|EEX61403.1| permease [Brucella abortus bv. 6 str. 870]
          Length = 627

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 146/217 (67%), Gaps = 9/217 (4%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF--S 94
           G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA IW   + +     S
Sbjct: 413 GYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAEIWRSGTDALLVDPS 472

Query: 95  NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-----SLLMTARTFPV 149
           NI +  +++     +PVL+++I    F++T LFH+INS+ Q+ +     SLLMT+R +P 
Sbjct: 473 NITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPGPSLLMTSRLWPA 530

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  + +Y+V RMERSL
Sbjct: 531 NWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHVVSYLVSRMERSL 590

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + A ++VD++D  AL +   ITR+LAA++L +  Q  
Sbjct: 591 LSAIQIVDRLDRAALEQKSRITRALAAQILADMGQAG 627


>gi|328543999|ref|YP_004304108.1| ATP/GTP-binding protein [polymorphum gilvum SL003B-26A1]
 gi|326413743|gb|ADZ70806.1| ATP/GTP-binding protein [Polymorphum gilvum SL003B-26A1]
          Length = 227

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 138/226 (61%), Gaps = 4/226 (1%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +  QL    P    + RDD LV ++   A  LIDSWP WPS VV+L GP GSGKS L  
Sbjct: 3   ERPRQLPLILPHEQALGRDDYLVGASNRAAFELIDSWPDWPSAVVVLAGPVGSGKSHLVQ 62

Query: 83  IWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           IW ++S +      ++ +     L+     V +E+      ++  LFH++N+  Q  +S+
Sbjct: 63  IWHERSGAAVIEAGDLTEGRVEELVSA-GAVAVENAHR-GVDERALFHLLNAARQAGASM 120

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+RT+P +W + L DL SRL+AAT V+I  PDDD L +V+VK+FADRQ+ ++  +  Y
Sbjct: 121 LITSRTWPAAWPLALADLVSRLRAATPVEILEPDDDLLRRVLVKLFADRQLAVEPAVVDY 180

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           +V RMERSL  A ++V+ +D  AL+ G  ITR LA +VL++ Q  +
Sbjct: 181 LVVRMERSLGVAGRVVEAIDREALANGSRITRPLAGKVLEQIQAGE 226


>gi|304391981|ref|ZP_07373923.1| ATP/GTP-binding protein [Ahrensia sp. R2A130]
 gi|303296210|gb|EFL90568.1| ATP/GTP-binding protein [Ahrensia sp. R2A130]
          Length = 223

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 133/219 (60%), Gaps = 6/219 (2%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL    P     +R DL+V S+   A   +D+WP W + V +L GP+GSGKS LA+IWS
Sbjct: 7   DQLPLDLPTTAQAARADLVVASSNSHAAACVDAWPDWAAPVAVLAGPTGSGKSHLASIWS 66

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
             S +   S      D++L    + +LLED+    F+D  LFH +N+  Q   SLL+T+R
Sbjct: 67  SMSHAVVLSPG----DAVL--AGRAMLLEDVTAGGFSDEWLFHAMNAAMQPGGSLLITSR 120

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
            +P  WGV LPDL SRL+   +V++  P+D+ L  V+ K+FADRQ+ +D  +  Y + RM
Sbjct: 121 QWPGEWGVSLPDLQSRLRLVHLVELHEPNDELLRGVLFKLFADRQLIVDAAVIDYCITRM 180

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ERSL  A  +V ++D L+L+R   IT+ L AE L+ T++
Sbjct: 181 ERSLASALAVVRQLDVLSLARKQAITKPLVAEALRMTEE 219


>gi|118590150|ref|ZP_01547553.1| hypothetical protein SIAM614_11568 [Stappia aggregata IAM 12614]
 gi|118437122|gb|EAV43760.1| hypothetical protein SIAM614_11568 [Stappia aggregata IAM 12614]
          Length = 226

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 130/218 (59%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P    +SRDD LV  +   A  L++ WP WPS VV+L GP G+GK+ L   + D
Sbjct: 7   QLPLELPHEAALSRDDYLVGGSNRAAFELLERWPDWPSPVVVLAGPVGAGKTHLVRAFQD 66

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
           ++ +        +  S+      P  + +   L  ++T LFH++N+  Q   ++L+T+RT
Sbjct: 67  ETGAVVLPAAELTPHSVQTLVAAPACVIEDAHLGIDNTALFHLLNAARQAGKTVLITSRT 126

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
           +P SW + L DL SRL+AAT V+I  PDDD L +V+VK+FADRQI +D+ +  Y+V RME
Sbjct: 127 WPASWKISLADLQSRLRAATPVEILEPDDDLLRRVLVKLFADRQIAVDQGVVDYLVVRME 186

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           RSL  A + V+ +D  AL+  + IT+ LA  VL+   +
Sbjct: 187 RSLEVAMRAVEAIDQEALAGRVKITKPLAGRVLENVHK 224


>gi|148255247|ref|YP_001239832.1| regulatory inactivation of DnaA Hda protein [Bradyrhizobium sp.
           BTAi1]
 gi|146407420|gb|ABQ35926.1| regulatory inactivation of DnaA Hda protein [Bradyrhizobium sp.
           BTAi1]
          Length = 228

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 86/220 (39%), Positives = 134/220 (60%), Gaps = 5/220 (2%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F+ P    ++RD+ L  +     + L+D+WP WP+R + LVGP GSGKS LA IW++
Sbjct: 9   QLAFALPHAESLTRDNFLEGAGNAAGLALVDAWPEWPARTMFLVGPDGSGKSHLAAIWAE 68

Query: 87  KSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
           +S +   S  A++LD   +        ++LED+    F++  LFH++N   Q ++ +L+T
Sbjct: 69  QSGARSLS--AQALDIAAVPRALATGALVLEDLSPTAFDERALFHLLNLARQDEAYILIT 126

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           AR  P +  V L DL SRL+A  VV +  PDD     +IVK+ ADRQ+ ID+ + +Y+  
Sbjct: 127 AREAPATMPVALSDLRSRLRACPVVTLLPPDDQLFRALIVKLAADRQLTIDEAVVSYLAT 186

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           R+ERS   A + V  +DN +L  G  +TR+LAAE+L+ ++
Sbjct: 187 RIERSYAAARQTVALLDNESLRLGRPVTRALAAELLRPSE 226


>gi|254505101|ref|ZP_05117252.1| hypothetical protein SADFL11_5141 [Labrenzia alexandrii DFL-11]
 gi|222441172|gb|EEE47851.1| hypothetical protein SADFL11_5141 [Labrenzia alexandrii DFL-11]
          Length = 226

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 134/222 (60%), Gaps = 4/222 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P    + R+D LV  + + A  L++ WP WPS V+IL GP GSGK+ L   + D
Sbjct: 7   QLPLDLPHDAALGREDYLVGKSNQAAFELLERWPDWPSPVIILAGPVGSGKTHLVEAFRD 66

Query: 87  KSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
           ++ +   +  ++ ++  S L+    P  + +      N+T LFH++N+  Q   ++L+T+
Sbjct: 67  ETGAEVIQARDLTEAGVSALVAA--PACVVEDAHRGVNNTALFHLLNAARQAGKTVLITS 124

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           RT+P SW + LPDL SRL+AAT V++  PDDD L +V+VK+FADRQI +D  +  Y+V R
Sbjct: 125 RTWPASWKISLPDLLSRLRAATPVEVLEPDDDLLRRVLVKLFADRQIGVDIGVVDYLVVR 184

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           MERSL  A + VD +D  AL+  + I++ LA  VL+     D
Sbjct: 185 MERSLEVALRAVDAIDREALAGRVKISKPLAGRVLETVTGTD 226


>gi|240850719|ref|YP_002972119.1| hypothetical protein Bgr_11870 [Bartonella grahamii as4aup]
 gi|240267842|gb|ACS51430.1| hypothetical protein Bgr_11870 [Bartonella grahamii as4aup]
          Length = 229

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 5/222 (2%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           +E QL  +FP       +DL+V  +   A +LID WP+W   + +LVG  GSGK+  +NI
Sbjct: 4   RETQLSLNFPYDPIFQFEDLVVTESNRMAFQLIDHWPNWSLPIAVLVGKEGSGKTHFSNI 63

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD-----S 138
           W  K+ + R  +        +    +  L+EDI   + N+T+LFH+INSI Q +     +
Sbjct: 64  WLQKADAFRIQHNEIDQAVTMASLGRSFLIEDIGAGEINETELFHLINSIKQANLDARQA 123

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           +LLMTART P +W + L DL SRL +   V+I+ PDD  L  V  K+F+DRQ+ +     
Sbjct: 124 TLLMTARTLPSAWNLKLNDLKSRLNSVMFVEINQPDDALLTAVAFKLFSDRQLIVHPDTV 183

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            Y+V R ERSL   ++++D +D LAL R   ITR++ AEVL 
Sbjct: 184 YYLVSRCERSLFSLKRVIDSVDQLALQRKRKITRAIIAEVLN 225


>gi|163868487|ref|YP_001609696.1| hypothetical protein Btr_1339 [Bartonella tribocorum CIP 105476]
 gi|161018143|emb|CAK01701.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 229

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           +E QL  +FP       DDL+V  +   A +LID WP+W   + +LVG  GSGK+  ++I
Sbjct: 4   RETQLSLNFPYKPIFQFDDLVVTDSNRMAFQLIDHWPNWSLPIAVLVGKEGSGKTHFSSI 63

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD-----S 138
           W  K+ + R           +     P L+EDID  + N+T+LFH+INS+ Q +     +
Sbjct: 64  WLQKANAFRIQRNKIDQAVAMASLGSPFLIEDIDAGEINETELFHLINSVKQANIDARQA 123

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           +LLMTA+T P +W + L DL SRL +   V+I+ PDD  L  V  K+F+DRQ+ +     
Sbjct: 124 TLLMTAQTLPSAWNLKLNDLKSRLNSVMFVEINQPDDALLTAVAFKLFSDRQLIVHPDTV 183

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            Y++ R ERSL   + ++D +D LAL R   ITR++ AEVL
Sbjct: 184 YYLISRCERSLFSLKHVIDSVDQLALQRKRKITRAVIAEVL 224


>gi|316933720|ref|YP_004108702.1| hypothetical protein Rpdx1_2378 [Rhodopseudomonas palustris DX-1]
 gi|315601434|gb|ADU43969.1| hypothetical protein Rpdx1_2378 [Rhodopseudomonas palustris DX-1]
          Length = 225

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/217 (41%), Positives = 133/217 (61%), Gaps = 3/217 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P    +SR+D L  SA   A+ LI+SWP WP+R+++LVGP GSGKS LA IW++
Sbjct: 9   QLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGSGKSHLAAIWAE 68

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
              +RST    +  +     + T   V++ED+    F++  LFH+IN   + ++ +L T 
Sbjct: 69  LAGARSTAAQALNAAAVPGALAT-GAVVVEDLAPGSFDERALFHLINMAREDEAYVLFTG 127

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R  P ++ V L DL SRL+A  VV +  PDD     +IVK  ADRQ+ ID  L  Y+  R
Sbjct: 128 RLAPSAFPVELRDLKSRLRAVPVVSLLPPDDALFRALIVKFCADRQMCIDAGLVGYLANR 187

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++RS V A ++V+K+D +AL  G  +TR+LA+E+L++
Sbjct: 188 IDRSFVAARRVVEKLDTMALRLGRPVTRALASEILRD 224


>gi|86749611|ref|YP_486107.1| hypothetical protein RPB_2491 [Rhodopseudomonas palustris HaA2]
 gi|86572639|gb|ABD07196.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas
           palustris HaA2]
          Length = 225

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 135/222 (60%), Gaps = 5/222 (2%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           QP+    QL    P    +SR+D L  +A   A+RLI+SWP WP+R+++LVGP GSGKS 
Sbjct: 6   QPR----QLALDLPHAESLSREDFLEGTANSSALRLIESWPDWPNRIMLLVGPEGSGKSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDS 138
           LA+IW++++ +   S  A +  ++  +     L+ ED+    F++  LFH+IN   + ++
Sbjct: 62  LASIWAEQAGARSTSAQALTAANVPGELATGALVVEDLTPGSFDERALFHLINLAREDEA 121

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            +L+TAR  P ++   L DL SRL+A  VV +  PDD     +IVK  ADRQ+ ID  L 
Sbjct: 122 YVLITARLAPAAFPADLRDLRSRLRAVPVVTLLPPDDALFRALIVKFCADRQMSIDANLV 181

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            Y+  R++RS   A + V+++D  AL  G  +TR+LAA+VL+
Sbjct: 182 GYLANRIDRSFAAARQTVERLDTEALRLGRPVTRALAADVLR 223


>gi|91977422|ref|YP_570081.1| hypothetical protein RPD_2953 [Rhodopseudomonas palustris BisB5]
 gi|91683878|gb|ABE40180.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas
           palustris BisB5]
          Length = 225

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 136/223 (60%), Gaps = 5/223 (2%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           QP+    QL    P    +SR+D L  +A   A++LI+SWP WP+R+++LVGP GSGKS 
Sbjct: 6   QPR----QLALDLPHAESLSREDFLEGTANTAALKLIESWPDWPNRIMLLVGPEGSGKSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDS 138
           LA+IW++++ +   S  A +  ++  +     L+ ED+    F++  LFH++N   + ++
Sbjct: 62  LASIWAEQAGARSTSAQALTPANVPGELATGALVVEDLTPGSFDERALFHLMNLAREDEA 121

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            +L+TAR  P ++   L DL SRL+A  VV +  PDD     +IVK  ADRQ+ ID  L 
Sbjct: 122 YVLITARLAPSAFPAELRDLRSRLRAVPVVSLLAPDDALFRALIVKFCADRQMSIDANLV 181

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            Y+  R++RS   A + V+++D  AL  G  +TR+LAAE+L+E
Sbjct: 182 GYLANRIDRSFAAARQAVERLDTEALRLGRPVTRALAAELLRE 224


>gi|75675787|ref|YP_318208.1| hypothetical protein Nwi_1595 [Nitrobacter winogradskyi Nb-255]
 gi|74420657|gb|ABA04856.1| regulatory inactivation of DnaA Hda protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 226

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/217 (39%), Positives = 132/217 (60%), Gaps = 5/217 (2%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F+ P     SRDD L   A   A+ LI+SWP WP+R+++L GP G GKS LA IW++
Sbjct: 9   QLAFTLPHAESFSRDDFLEGPANAAALSLIESWPEWPNRIMLLAGPEGCGKSHLAAIWAE 68

Query: 87  KSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
           ++ +   S  A+ L +  +    T   +++ED++   F++  LFH++N   +  + +LMT
Sbjct: 69  RAGARSIS--AQGLTAATVPMALTTGALVVEDLNPKTFDELALFHLMNLAREEAAFVLMT 126

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           AR  P +  + L DL SRL+A  VV +  PDD  L  +IVK  ADRQ+ ID+ + ++I  
Sbjct: 127 ARVTPAAIEIGLRDLRSRLRAVPVVTLMPPDDHLLRALIVKFSADRQMNIDEAIVSFIAT 186

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R ERS+  A   V+++D  +L  G  +TR+LAAE+L+
Sbjct: 187 RTERSVAAARLAVEQLDAESLRLGRPVTRALAAELLR 223


>gi|115525284|ref|YP_782195.1| hypothetical protein RPE_3282 [Rhodopseudomonas palustris BisA53]
 gi|115519231|gb|ABJ07215.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas
           palustris BisA53]
          Length = 224

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 137/224 (61%), Gaps = 5/224 (2%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           + +  QL  + P    +SRDD L   A   A+ L+D WP WP+RV++L GP GSGKS LA
Sbjct: 3   QGQPRQLALALPHAESLSRDDFLEGPANRVALSLVDHWPDWPNRVMLLSGPEGSGKSHLA 62

Query: 82  NIWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138
            IW++++ +   S  A++L S  +    T   +++ED+    F++  LFH++N   +  +
Sbjct: 63  AIWAEQAGARSIS--AQALTSAAVPAALTTGALVVEDLTPGGFDERALFHLMNLAREDQA 120

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            +L+TAR  PV++ + L DL SRL+A  V+++  PDD     +IVK  ADRQ+ +D+ L 
Sbjct: 121 YVLITARIPPVAFEIDLRDLRSRLRAVPVLELLPPDDQLFRALIVKFCADRQMSVDEALV 180

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +++  R++RS   A + V+K+D  AL  G  +TR+LAAE+ ++ 
Sbjct: 181 SFLANRIDRSFAAARRAVEKLDTEALRLGRPVTRALAAELFRDA 224


>gi|49475708|ref|YP_033749.1| hypothetical protein BH09540 [Bartonella henselae str. Houston-1]
 gi|49238515|emb|CAF27747.1| hypothetical protein BH09540 [Bartonella henselae str. Houston-1]
          Length = 229

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 131/222 (59%), Gaps = 5/222 (2%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           +E QL  +F        DDL+V  +   A +LID WP+W   + +LVG  GSGK+  +++
Sbjct: 4   RETQLPLNFSYNPIFQFDDLVVTESNRMAFQLIDHWPNWILPIAVLVGKEGSGKTHFSSV 63

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD-----S 138
           W++K+ + RF          +  + +  L+EDIDL + ++T LFH+INS+ Q +     +
Sbjct: 64  WAEKADALRFHRNEIDQAIAVASSGRSFLIEDIDLGEISETGLFHLINSVKQANLDMCQA 123

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           +LLMTART P +W + L DL SRL +  +V I+ PDD  L  V  K+F+DRQI +     
Sbjct: 124 TLLMTARTVPSTWNLKLNDLKSRLNSIMLVAINQPDDALLTAVAFKLFSDRQITVHPDTV 183

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            Y+V R ERSL   ++++D +D LAL R   ITR++  EVL 
Sbjct: 184 YYLVNRCERSLFSLKRVIDSVDRLALQRKSKITRAVIGEVLN 225


>gi|146340319|ref|YP_001205367.1| hypothetical protein BRADO3342 [Bradyrhizobium sp. ORS278]
 gi|146193125|emb|CAL77136.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 225

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 130/217 (59%), Gaps = 5/217 (2%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL  + P    ++RD+ L        + L+D+WP WP+  + LVGP GSGKS LA IW++
Sbjct: 9   QLALALPHAESLTRDNFLEGPGNAAGLALVDAWPEWPANTMFLVGPDGSGKSHLAAIWAE 68

Query: 87  KSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
           +S +   S  A +LD+  +        ++LED+   D ++  LFH++N   Q ++ +L+T
Sbjct: 69  RSGARSLS--AHALDAGAVPGALATGALVLEDLTAADLDERALFHLLNLARQDEAYILIT 126

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           AR  PV+  + L DL SRL+A  V+ +  PDD     +IVK+ ADRQ+ ID+ + +Y+  
Sbjct: 127 AREAPVALPIALADLRSRLRAVPVITLLPPDDQLFRALIVKLAADRQLAIDETVVSYLAS 186

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R+ERS   A + +  +D+ +L  G  +TR+LAAE+L+
Sbjct: 187 RIERSYAAARQTIALLDDESLRLGRPVTRALAAELLR 223


>gi|307946765|ref|ZP_07662100.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4]
 gi|307770429|gb|EFO29655.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4]
          Length = 225

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/220 (40%), Positives = 130/220 (59%), Gaps = 6/220 (2%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P    + RDD LV  + + A  L++SWP+WPS VVIL GP G+GK+ L      
Sbjct: 7   QLPLDLPYEAALGRDDYLVGRSNQAAYELLESWPNWPSPVVILAGPVGAGKTHLVEALRA 66

Query: 87  KSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
            S +   +  A  L+   +        V++ED      N+T LFH++N+  Q    +L+T
Sbjct: 67  DSGAAVVA--APKLEEASVPDLVAAGSVVVEDAHQ-GVNETALFHLLNAARQAGVLVLIT 123

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +RT+P +W + LPDL SRL+AAT V+I  PDDD L +V++K+F+DRQ+ +D  +  Y+V 
Sbjct: 124 SRTWPATWSIQLPDLLSRLRAATPVEILEPDDDLLRQVLLKLFSDRQLAVDFAVIDYLVV 183

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           RMERSL  A   VD +D  AL+  + IT+ LA +VL   Q
Sbjct: 184 RMERSLEVAINAVDAIDREALAGRVKITKQLAGKVLDRVQ 223


>gi|92117644|ref|YP_577373.1| hypothetical protein Nham_2116 [Nitrobacter hamburgensis X14]
 gi|91800538|gb|ABE62913.1| regulatory inactivation of DnaA Hda protein [Nitrobacter
           hamburgensis X14]
          Length = 226

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 130/222 (58%), Gaps = 5/222 (2%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           + +  QL F  P    +SRDD L   A   A+ LI+SWP WP+RV++L GP G GKS LA
Sbjct: 4   RPRPRQLAFVLPHAESLSRDDFLEGPANAAALSLIESWPEWPNRVMLLAGPEGCGKSHLA 63

Query: 82  NIWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138
            IW++++ +   S  A  L +  +        +++EDI+   F++  LFH++N   +  +
Sbjct: 64  TIWAEQAGARSIS--AHGLTAAAVPGALATGALVVEDINPHAFDELALFHLMNLAREDGA 121

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            +LMTAR  P +  + L DL SRL+A  VV +  PDD  L  +I+K  ADRQ+ ID+ + 
Sbjct: 122 FVLMTARVPPAAIEIGLRDLQSRLRAVPVVTLMPPDDQLLRALIIKFCADRQMSIDETVV 181

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +I  R ERS   A   ++++D  +L  G  +TR+LAAE+L+
Sbjct: 182 HFIATRTERSFAAARHAIERLDAESLRLGRPVTRALAAELLR 223


>gi|192291830|ref|YP_001992435.1| hypothetical protein Rpal_3459 [Rhodopseudomonas palustris TIE-1]
 gi|192285579|gb|ACF01960.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 225

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/217 (41%), Positives = 130/217 (59%), Gaps = 5/217 (2%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P    +SR+D L  SA   A+ LI+SWP WP+R+++LVGP GSGKS LA IW++
Sbjct: 9   QLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGSGKSHLAAIWAE 68

Query: 87  --KSRSTRFSNI-AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
              +RST    + A S+   L      V++ED+    F++  LFH++N   + ++ +L T
Sbjct: 69  LAGARSTAAQALNAASVPGAL--ATGAVVVEDLVPGSFDERALFHLMNMAREDEAYVLFT 126

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
            R  P +  + L DL SRL+   VV +  PDD     +IVK  ADRQ+ ID  L  Y+  
Sbjct: 127 GRVEPSALSIDLRDLKSRLRTVPVVSLLPPDDALFRALIVKFCADRQMCIDAALVGYLAN 186

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R++RS V A ++V+K+D  AL  G  +TR+LA+EVL+
Sbjct: 187 RIDRSFVAARQVVEKLDTTALRLGRPVTRALASEVLR 223


>gi|39936112|ref|NP_948388.1| hypothetical protein RPA3049 [Rhodopseudomonas palustris CGA009]
 gi|39649966|emb|CAE28490.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 229

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 3/216 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P    +SR+D L  SA   A+ LI+SWP WP+R+++LVGP GSGKS LA IW++
Sbjct: 13  QLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGSGKSHLAAIWAE 72

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
              +RST    +  +     + T   V++ED+    F++  LFH++N   + ++ +L T 
Sbjct: 73  LAGARSTAAQALNAAAVPGALAT-GAVVVEDLVPGSFDERALFHLMNMAREDEAYVLFTG 131

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R  P +  + L DL SRL+   VV +  PDD     +IVK  ADRQ+ ID  L  Y+  R
Sbjct: 132 RVEPSALSIELRDLKSRLRTVPVVSLLPPDDALFRALIVKFCADRQMCIDAALVGYLANR 191

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++RS V A ++V+K+D  AL  G  +TR+LA+EVL+
Sbjct: 192 IDRSFVAARQVVEKLDTTALRLGRPVTRALASEVLR 227


>gi|27379234|ref|NP_770763.1| hypothetical protein bll4123 [Bradyrhizobium japonicum USDA 110]
 gi|27352385|dbj|BAC49388.1| bll4123 [Bradyrhizobium japonicum USDA 110]
          Length = 225

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/218 (38%), Positives = 131/218 (60%), Gaps = 3/218 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL FS P    +SRD+ L   A    + LID WP WP+R++ L GP GSGKS LA IW++
Sbjct: 9   QLAFSLPHAESLSRDNFLEGPANAAGLALIDGWPEWPNRIMWLAGPEGSGKSHLAAIWAE 68

Query: 87  KS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
           ++  RST  + ++ +     + T   +++ED+   DF++  LFH++N   +  + +L T 
Sbjct: 69  EAGARSTTANALSAAGVPGALAT-GALVVEDLKAKDFDERALFHLMNLAREDGAYVLFTG 127

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R  P +  + L DL SRL+A  VV +  PDD     +IVK  ADRQ+ +D+ + +Y+  R
Sbjct: 128 RDVPAALDIELNDLRSRLRAVPVVMLLPPDDQLFRGLIVKFCADRQLTVDESVVSYLATR 187

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +ERS   A + V+ +D+ AL  G  +TR+LAAE+L++ 
Sbjct: 188 LERSSAAARQAVELLDSEALRLGRPVTRALAAELLRDA 225


>gi|49474323|ref|YP_032365.1| hypothetical protein BQ07360 [Bartonella quintana str. Toulouse]
 gi|49239827|emb|CAF26220.1| hypothetical protein BQ07360 [Bartonella quintana str. Toulouse]
          Length = 229

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 5/222 (2%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           +E QL   F        DDL+V  +   A +LID WP+W   + +LVG  GSGK+  ++I
Sbjct: 4   RETQLPLDFSYNPVFQFDDLVVTESNRMAFQLIDHWPNWILPIAVLVGKEGSGKTHFSSI 63

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD-----S 138
           W+ K+ + R           +  + K  L+EDID  + ++T LFH+IN++ Q +     +
Sbjct: 64  WAQKTDALRLHRNEIDQAIAIGSSGKSFLIEDIDAGEISETGLFHLINNVKQANLDTRQA 123

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           +LL+TART P +W + L DL SRL +  +VKI+ PDD  L  V  K+F+DRQI +     
Sbjct: 124 TLLITARTVPSAWNLKLNDLKSRLNSVMLVKINQPDDALLTAVAFKLFSDRQIIVHPDTV 183

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            Y+V R ERSL   + ++D +D LAL R   ITR++  EVL 
Sbjct: 184 YYLVSRCERSLFSLKHVIDSVDRLALQRKSKITRAVIGEVLN 225


>gi|182678282|ref|YP_001832428.1| chromosomal replication initiator DnaA [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634165|gb|ACB94939.1| Chromosomal replication initiator DnaA [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 232

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 6/225 (2%)

Query: 20  QPKNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           +PK    QL F      C GI  +D  V  + E A  +++ WP WP  V++L GP+G+GK
Sbjct: 2   RPKEPARQLTFDLAGDPCFGI--EDFFVSESNENAYAMLELWPDWPDSVLLLRGPAGAGK 59

Query: 78  SCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           S L  IW+ ++  R     + A   D   +    P+L+ED D +   +  LFH++N +  
Sbjct: 60  SHLGAIWAARAGARILTARDFAAERDLESLARSGPLLIEDADAIGEAEASLFHLLNLVRH 119

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           +  +L++TAR  P  WG+ + DL SRL+ A V  I  PD+D +  ++VK+F DRQ+ +D 
Sbjct: 120 HHHALVLTARRAPDFWGLRIADLLSRLRLAPVAAIEPPDEDLMRAILVKLFLDRQLVVDT 179

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            L  +    ++RS   A   V+++D  AL+RG  IT+SLA  VL+
Sbjct: 180 GLIEHAALHLDRSFEAARDFVERLDREALARGARITKSLAGTVLQ 224


>gi|300024349|ref|YP_003756960.1| chromosomal replication initiator, DnaA [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526170|gb|ADJ24639.1| chromosomal replication initiator, DnaA [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 224

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/215 (38%), Positives = 124/215 (57%), Gaps = 2/215 (0%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL F  P    +  +D LV  +   AV LID WP WP    ILVGP GSGK+ LAN+W 
Sbjct: 6   EQLVFEMPHRAAMGLEDFLVSDSNAAAVALIDRWPDWPIGAAILVGPRGSGKTHLANVWQ 65

Query: 86  DKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
            +S +      + + +++  + +   V++E+I+ L  ++  LFH++N + +    +L+T 
Sbjct: 66  LRSEAALHPAASLTRENVPAVASAGAVIIENIETLT-DEAALFHLLNLVREQRLQVLLTT 124

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
            T P    + LPDL SRLKA  +  I  PDD  L  V+VK+FADRQ+ ++  +  Y++ R
Sbjct: 125 DTAPGDLKIALPDLLSRLKALPLASIEAPDDALLRAVLVKLFADRQLSVEPHIVDYVLVR 184

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           MERS+  AE+ V + D  AL     +TR++AA  L
Sbjct: 185 MERSMSAAERFVAEADRQALVLQRRVTRAIAAAAL 219


>gi|85717202|ref|ZP_01048159.1| hypothetical protein NB311A_18728 [Nitrobacter sp. Nb-311A]
 gi|85695982|gb|EAQ33883.1| hypothetical protein NB311A_18728 [Nitrobacter sp. Nb-311A]
          Length = 226

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 126/216 (58%), Gaps = 3/216 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F+ P     SRDD L   A   A+ LI+SWP WP+R+++L GP G GKS LA IW++
Sbjct: 9   QLAFALPHAESFSRDDFLEGHANAAALSLIESWPEWPNRIMLLAGPEGCGKSHLAAIWAE 68

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
              +RS     +  +   + + T   +++ED++   F++  LFH++N   +  + +L+TA
Sbjct: 69  LAGARSISAQGLTAATVPMALAT-GALVVEDLNPQTFDELALFHLMNLAREETAFVLITA 127

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R  PV+  + L DL SRL+A  VV +  PDD     +IVK  ADRQ+ ID+ +   I  R
Sbjct: 128 RVTPVAIEIGLRDLRSRLRAVPVVTLMPPDDQLFRALIVKFSADRQMNIDEAVVNLIATR 187

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            ERS   A   V ++D  +L  G  +TR+LAAE+L+
Sbjct: 188 TERSFAAARLAVQRLDTESLRLGRPVTRALAAELLR 223


>gi|121602210|ref|YP_989063.1| hypothetical protein BARBAKC583_0767 [Bartonella bacilliformis
           KC583]
 gi|120614387|gb|ABM44988.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
          Length = 229

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 9/228 (3%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           +E QL    P       D+L+V  +   A +LID+WP+W   + ILVG  GSGK+  +++
Sbjct: 4   REVQLPLDLPYESVFCFDNLVVTDSNRMAFQLIDNWPNWILPIAILVGKEGSGKTHFSSV 63

Query: 84  WSDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD---- 137
           W+ K+ +       + +D +  L+ + K +L+E+ID    ++T LFH+INSI Q +    
Sbjct: 64  WAQKANALTVDR--EDIDRVISLVSSGKSLLIENIDAGQISETGLFHLINSIQQANLDAR 121

Query: 138 -SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            ++LL+TART P +W + L DL SRL +  +V I+ PDD  L  V  K+F+DRQI +   
Sbjct: 122 QTNLLITARTVPSTWNLKLNDLKSRLNSVMLVAINQPDDALLTAVAFKLFSDRQIAVHSD 181

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +  Y+V R ERSL   +++VD +D LAL R   ITR++  E +    Q
Sbjct: 182 IIHYLVTRCERSLFALQRVVDSVDRLALQRKSKITRTVIGEAINMQMQ 229


>gi|218512961|ref|ZP_03509801.1| hypothetical protein Retl8_04315 [Rhizobium etli 8C-3]
          Length = 166

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 103/163 (63%), Gaps = 2/163 (1%)

Query: 17  KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           KN  PK K  EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP GS
Sbjct: 5   KNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           GKS LA IW + S +        S D+ +     PVL ED D L F+D  LFH+INS+ +
Sbjct: 65  GKSHLARIWRELSGAVDIRPDLGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
           + +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L
Sbjct: 124 HGTSLLMTSRLWPISWPVLLPDLRSRLKAATVVEIGEPDEALL 166


>gi|319408623|emb|CBI82278.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 231

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 128/229 (55%), Gaps = 11/229 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL   F       RDDL+V  +   A +L+D WP+W   + +LVG  GSGK+  +++W
Sbjct: 5   ETQLPLDFSYESVFRRDDLVVTDSNRMAFQLVDHWPNWVLPIAVLVGKEGSGKTHFSSVW 64

Query: 85  SDKSRSTRFSNIAKSLDSILI--DTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD----- 137
             K+ +         +D ++    + + +L+EDID    N+T LFH+INSI Q +     
Sbjct: 65  VQKANALIVHR--DEIDQVITAASSGRSLLIEDIDTGKINETGLFHLINSIKQANLNVRQ 122

Query: 138 --SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             ++LLMTART P +W + L DL SRL +  +V+I  PDD  L  +  K+F+DRQI +  
Sbjct: 123 GQATLLMTARTLPSTWDLKLNDLKSRLNSVMLVEIDQPDDALLTAIAFKLFSDRQITVHS 182

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            +  Y+V R ERSL     ++D +D LAL R   ITR++  EV+    Q
Sbjct: 183 DIIHYLVSRCERSLFALRCVIDSVDKLALQRKRKITRAVICEVINTQMQ 231


>gi|114769541|ref|ZP_01447167.1| hypothetical protein OM2255_07405 [alpha proteobacterium HTCC2255]
 gi|114550458|gb|EAU53339.1| hypothetical protein OM2255_07405 [alpha proteobacterium HTCC2255]
          Length = 231

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 126/219 (57%), Gaps = 7/219 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P      R+D  V S+   AV+++++W +WP   +IL+GPSGSGKS LANIW+
Sbjct: 3   DQLTFDLPIKTAFGREDFFVTSSNSTAVKILENWKNWPLSKLILIGPSGSGKSHLANIWT 62

Query: 86  DKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSL 140
           + +   R    AK L  I   + ++  + LE  +++  N   +   FH+ N   +  + L
Sbjct: 63  EMTNGVRIE--AKYLMDIDLQVASQSALCLEGFEVIAGNQELEAHAFHLHNLAQESGAPL 120

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T  + P +W + LPDL SR++  +V ++  PDD  L  V++K F DRQI ID K+  Y
Sbjct: 121 LITGCSTPSTWNLLLPDLLSRIQGTSVAQLQSPDDVLLNAVLIKQFNDRQIAIDPKVVTY 180

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +++RMERS      LV+++D  AL  G  I+  LA  VL
Sbjct: 181 LLKRMERSFASISYLVNELDKGALKVGKPISIKLARNVL 219


>gi|312112993|ref|YP_004010589.1| hypothetical protein Rvan_0200 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218122|gb|ADP69490.1| hypothetical protein Rvan_0200 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 232

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 124/214 (57%), Gaps = 2/214 (0%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    PR       D  V +  ++A  L+  WP W +   ++ GP  SGK+ LA+IW  
Sbjct: 4   QLVLDLPRRFAYDEADFFVTARNDRAFGLVCQWPDWHAPAAVIWGPPQSGKTYLAHIW-- 61

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
           ++R+        +L+  +   R+P++LED+D     +T LFH +N   ++ S +L+TART
Sbjct: 62  QARANAAFADPAALEGHVWAARQPLVLEDVDASALPETALFHHLNLAREHGSFILLTART 121

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P SW + LPDL SR+++    +I  PD++ L  +++K F+DR I I   + AY+VQR+E
Sbjct: 122 PPGSWRIALPDLRSRIRSYPTAEIQPPDEEHLAALLLKHFSDRGIEIAPDVIAYLVQRIE 181

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           RS+  A+ +   +D  AL+    ITR+ AA+VLK
Sbjct: 182 RSMAAADAVASLLDKAALAERRRITRAFAAKVLK 215


>gi|323137708|ref|ZP_08072784.1| Chromosomal replication initiator DnaA [Methylocystis sp. ATCC
           49242]
 gi|322397005|gb|EFX99530.1| Chromosomal replication initiator DnaA [Methylocystis sp. ATCC
           49242]
          Length = 234

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/215 (38%), Positives = 128/215 (59%), Gaps = 2/215 (0%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P      RDD L  +    A+ +++ WP WP R++ L+GP GSGKS L  IW++
Sbjct: 10  QLPLELPVEPRFGRDDFLPAACNRAALAMVERWPDWPDRILSLIGPPGSGKSHLLAIWAE 69

Query: 87  KSRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
            + + R   +   +L+++       ++++D+D +  ++T LFH++N   ++   LLM+A 
Sbjct: 70  SAGALRVDPVTLPTLEALNAAAPAAIVIDDVDRVR-DETALFHLLNFAVEHRVFLLMSAS 128

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P    V LPDL SRL+ A VV+I  PDD+ +  V+ K+F DRQ+ +D+   AY+  R+
Sbjct: 129 RRPRPEDVRLPDLLSRLRRAPVVEIGAPDDELMRAVLEKLFRDRQLIVDEPALAYVSLRL 188

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ERSL  A  LV  +D  AL+R   ITR+LAAEV++
Sbjct: 189 ERSLDAARALVAALDREALARRRPITRALAAEVME 223


>gi|40063570|gb|AAR38359.1| conserved hypothetical protein [uncultured marine bacterium 582]
          Length = 227

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 130/221 (58%), Gaps = 3/221 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    + RDD  +  +   AV +ID+W  W S+ ++L GP G+GK+ L+++W+ 
Sbjct: 4   QLSFDLPARAALGRDDFFISPSNRIAVSMIDNWTDWSSQKLLLTGPEGAGKTHLSHVWAR 63

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMT 143
           +S +T         D++   +  PV +E++     LD   T LF++ N   +   S+L T
Sbjct: 64  QSGATIIDATELQDDAVPKLSSGPVAVENVHTIAGLDAQQTALFYLHNLCLETGQSILFT 123

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
            R  P  W + LPDL SRL+ A +V+++ PDD  L+ V++K+F DRQ+    +L  Y+V+
Sbjct: 124 GRGEPQHWLLTLPDLESRLRGAPLVQLNPPDDALLKAVLIKLFGDRQLSPSPELITYVVR 183

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           R++RS   A+KLV  +D L+L+    ++R LAA +L+ +Q+
Sbjct: 184 RIDRSFDAAQKLVVALDTLSLAEKRPLSRRLAARLLEPSQE 224


>gi|90419524|ref|ZP_01227434.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336461|gb|EAS50202.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 230

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 117/199 (58%), Gaps = 2/199 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           Q+    P    ++R+DL++  +   AV  IDSWP W   V+++VGP GSGK+ LAN WS+
Sbjct: 4   QIPLELPHAASLAREDLIMSPSNRLAVEAIDSWPQWRHSVLLIVGPPGSGKTHLANAWSE 63

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
           ++ +T     A        D R  V+++D D    ++ +LF ++N+      SLL+T+R 
Sbjct: 64  RAGATVARPDATEASLAADDFR--VVVDDADRTALSERELFGLVNAARLGGGSLLLTSRV 121

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P +  V   DL SRL AAT+ ++  PDD  L  V++K+FADRQI +  +   Y+VQRME
Sbjct: 122 MPQAMNVATADLRSRLAAATIAELGAPDDPLLTGVLIKLFADRQIAVSPRAVNYLVQRME 181

Query: 207 RSLVFAEKLVDKMDNLALS 225
           RSL  A  LV ++D  AL+
Sbjct: 182 RSLDAAGFLVAEIDREALA 200


>gi|254473332|ref|ZP_05086729.1| ATP/GTP-binding protein [Pseudovibrio sp. JE062]
 gi|211957448|gb|EEA92651.1| ATP/GTP-binding protein [Pseudovibrio sp. JE062]
          Length = 226

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 124/216 (57%), Gaps = 2/216 (0%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL    P    +  DD LV ++ + A  L+ +WP WPS +V L GP GSGK+ L N W 
Sbjct: 8   QQLPLVLPHEEALGVDDYLVSTSNQAAFNLVTNWPEWPSPIVTLQGPIGSGKTHLVNAWQ 67

Query: 86  DKSRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
           + S +        + LD   +    PV +ED+    F++  LFH+ N++     ++LMT 
Sbjct: 68  ELSGAQIVGGDELEYLDLTALAEAGPVAVEDLHA-GFDEASLFHLFNAVRLTGGNMLMTT 126

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R +P ++ +   DL SR +AAT V++  PDD  L  V+ K F+DRQ+ +D  +  Y+V R
Sbjct: 127 REWPHTFDLKTKDLASRFRAATPVQVEEPDDMLLAMVMTKHFSDRQVTVDSSVIDYLVIR 186

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +ERSL  A  +VD +D  AL+ G  I+R +A+++L+
Sbjct: 187 IERSLDAARNVVDMLDRHALATGRKISRVMASKILE 222


>gi|90423831|ref|YP_532201.1| hypothetical protein RPC_2328 [Rhodopseudomonas palustris BisB18]
 gi|90105845|gb|ABD87882.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas
           palustris BisB18]
          Length = 225

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 133/221 (60%), Gaps = 5/221 (2%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           +  QL  + P    +SRDD L   +  +A++LID WP WP+RV++L GP GSGKS L++I
Sbjct: 6   QPRQLALALPHAESLSRDDFLEGPSNSEALKLIDHWPDWPNRVMLLTGPEGSGKSHLSSI 65

Query: 84  WSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           W++++ +   +  A +L S  +        +++ED+     ++  LFH++N   +  + +
Sbjct: 66  WAEQAGARAIT--AHALTSSAVPGALATGALVVEDLCPPCIDERALFHLLNLAREDQAYV 123

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+R  P +  V L DL SRL+A   V +  PDD     +IVK  ADRQ+ +D+ L ++
Sbjct: 124 LITSRLPPSALEVDLRDLRSRLRAVPAVTLLPPDDQLFRALIVKFCADRQMSVDESLVSF 183

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  R++RS + A + V+++D  AL  G  +TR+LAAE+ ++
Sbjct: 184 VANRIDRSFIAARQAVERLDTEALRLGRPVTRALAAELFRD 224


>gi|158422563|ref|YP_001523855.1| hypothetical protein AZC_0939 [Azorhizobium caulinodans ORS 571]
 gi|158329452|dbj|BAF86937.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 238

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 13/226 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +  QL    P    + R+D L       A+RLIDS+P W +RVV LVGP G+GKS LA 
Sbjct: 6   TRPRQLPLDLPATSAMQREDFLEAPGNAAALRLIDSFPDWTARVVCLVGPPGTGKSHLAA 65

Query: 83  IWSDKSRSTRFS-------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135
           ++++++ +   S       N+ ++L          +++ED++   F +  LFH++N   +
Sbjct: 66  VFAERAGAATVSAVDLTRANVPEALAG------GALVVEDLEPGHFEEAALFHLLNLARE 119

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             + +LMTART P  W +   DL SRL+A     I   DD  L  V+VK+F+DRQI +D 
Sbjct: 120 QQAHVLMTARTAPAHWKLHTADLSSRLRALPTFFIEEADDALLAAVLVKLFSDRQIPVDD 179

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               Y++ RM+R+   A  +V  +D  AL+    +TR+LAA+VL++
Sbjct: 180 ATVQYLLLRMDRTFEGARSVVQAIDRAALAAQRPVTRALAAQVLRD 225


>gi|319898870|ref|YP_004158963.1| hypothetical protein BARCL_0704 [Bartonella clarridgeiae 73]
 gi|319402834|emb|CBI76385.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 229

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 129/224 (57%), Gaps = 9/224 (4%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           +E QL   F        DDL+V  +   A +LI+ WP+W   + IL+G  GSGK+  +++
Sbjct: 4   REMQLPLDFSYKSIFQFDDLVVTDSNRMAFQLINHWPNWVPPIAILIGDKGSGKTHFSSV 63

Query: 84  WSDKSRSTRFSNIAKSLDSILID--TRKPVLLEDIDLLDFNDTQLFHIIN-----SIHQY 136
           W+ K+ +         +D  +++  + KP L+E+ID  + ++  LFH+IN     ++H  
Sbjct: 64  WAQKANALNI--FYDEIDQFIVEASSGKPFLIENIDSGEIDEIGLFHLINIIKQANLHVN 121

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            ++LLMTART P +W + L DL SRL +  +V +  PDD+ L  +  K+F+DRQI +   
Sbjct: 122 HATLLMTARTLPSAWNLKLNDLKSRLNSVMLVALEQPDDELLTAIAFKLFSDRQITVHSD 181

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +  Y++ R ERSL   + ++D +D LAL R   +TR++  EV+ 
Sbjct: 182 IIYYLINRCERSLFSLKCIIDSVDRLALQRKSKVTRAIITEVIN 225


>gi|126735140|ref|ZP_01750886.1| hypothetical protein RCCS2_14724 [Roseobacter sp. CCS2]
 gi|126715695|gb|EBA12560.1| hypothetical protein RCCS2_14724 [Roseobacter sp. CCS2]
          Length = 219

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 3/214 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F +P  + +  DD  V  A  QA  ++ +  +WP + + L+GPSG GKS L+ ++  
Sbjct: 4   QLAFDWPTGVALGPDDFFVSDANAQAFAMLSTPEAWPEQKLALIGPSGCGKSHLSRVF-- 61

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSSLLMTAR 145
           +++S  F  +A  + +        V++ED++ L    +  +FH+ N++     SLL+T+ 
Sbjct: 62  QAQSDAFLIVASEISATFQTDASTVIIEDMETLPSAAEEAVFHLHNNLRNAGGSLLLTSD 121

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P  W + LPDL SR++A TVV+I  PDD  L  +I+K+FADRQI     L  Y+  R+
Sbjct: 122 HPPSRWPITLPDLASRMQATTVVQIDNPDDALLSALIMKLFADRQINPQPALVQYLSTRI 181

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           ERS   A  +V ++D  AL++G  I +SLAAE+L
Sbjct: 182 ERSFAAAADIVARLDAAALAQGRKINKSLAAELL 215


>gi|319404186|emb|CBI77779.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 229

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 129/223 (57%), Gaps = 9/223 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL   F        DDL++  +   A +LI+ WP+W   + +L+G  GSGK+  +++W
Sbjct: 5   ETQLPLDFSHKSVFQFDDLVMTDSNRMAFQLINHWPNWVPPIAVLIGDKGSGKTHFSSVW 64

Query: 85  SDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD----- 137
           + K+ +    +    +D +  +  + K  L+ED+D  + ++T LFH+INSI Q +     
Sbjct: 65  AQKANALNVCH--DEIDQVIAMASSGKSFLIEDVDSGEISETGLFHLINSIKQANLGINQ 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           ++LLMTART P +W + L DL SRL +  +V +  PDD  L  +  K+F+DRQI +   +
Sbjct: 123 ATLLMTARTLPSTWNLQLDDLKSRLNSVMLVVLKQPDDALLTAIAFKLFSDRQITVHPSV 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             Y++   ERSL   ++++D +D LAL R   +TRS+ +EV+ 
Sbjct: 183 IHYLINHCERSLFSLKRVIDSVDRLALQRKSKVTRSIISEVIN 225


>gi|319407203|emb|CBI80842.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 229

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 9/223 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL   F        DDL++  +   A +LI+ WP+W   V IL+G  GSGK+  +++W
Sbjct: 5   ETQLPLDFSHKSVFQFDDLVMTDSNRMAFQLINHWPNWVPPVAILIGDKGSGKTHFSSVW 64

Query: 85  SDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD----- 137
           + K+ +    +    +D +  +  + K  L+ED+D  + ++T LFH+INS+ Q +     
Sbjct: 65  AQKANALNVCH--DEIDQVISMASSGKSFLIEDVDSGEISETGLFHLINSVKQANLGINQ 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           ++LLMTART P +W + L DL SRL +  +V I  PDD  L  +  K+F+DRQI +   +
Sbjct: 123 ATLLMTARTLPSTWNLQLNDLKSRLNSVMLVVIKQPDDALLTAIAFKLFSDRQITVHPSV 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             Y++   ERSL   + ++D +D LAL R   +TRS+ +EV+ 
Sbjct: 183 IHYLINHCERSLFSLKCVIDSVDRLALQRKSKVTRSIISEVIN 225


>gi|319405633|emb|CBI79256.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 229

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 124/207 (59%), Gaps = 9/207 (4%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           DDL++  +   A +LI+ WP+W   + +L+G  GSGK+  +++W+ K+ +    +  + +
Sbjct: 21  DDLIMTDSNRMAFQLINHWPNWIPPIAVLIGDKGSGKTHFSSVWAQKANALNICH--EEI 78

Query: 101 DSILI--DTRKPVLLEDIDLLDFNDTQLFHIINSI-----HQYDSSLLMTARTFPVSWGV 153
           D ++    + K  L+EDID  + ++  LFH+INS+     H   ++LLMTART P +W +
Sbjct: 79  DQVIAIASSGKSFLIEDIDSAEISEIGLFHLINSVKQANLHMNQATLLMTARTLPSTWNL 138

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            L DL SRL +  +V +  PDD  L  +  K+F+DRQI +   +  Y++ R ERSL   +
Sbjct: 139 QLNDLKSRLNSVMLVVLKQPDDALLTAIAFKLFSDRQITVHPSVIHYLINRCERSLFSLK 198

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLK 240
            ++D +D LAL R   +TR++ +EV+ 
Sbjct: 199 SIIDSVDQLALQRKSKVTRAIISEVIN 225


>gi|163733468|ref|ZP_02140911.1| hypothetical protein RLO149_17493 [Roseobacter litoralis Och 149]
 gi|161393256|gb|EDQ17582.1| hypothetical protein RLO149_17493 [Roseobacter litoralis Och 149]
          Length = 227

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL F  P    + R D LV  +   AV LI+ W  WP R ++L GP+GSGK+ LA++W+
Sbjct: 3   EQLGFDLPGITALGRADFLVAPSNAVAVALIEGWQDWPGRKLVLSGPAGSGKTHLAHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142
             S +        +   I    R+ V +ED+  +  N   +T LFH+ N      ++LL 
Sbjct: 63  ALSGAEICEAQTLAAQDIPELARRSVAIEDVPAIAGNTEAETALFHLHNLALAEGNALLF 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T    P +W + LPDL SR++      + LPDD  L  V+ K+FADRQ+     L AY++
Sbjct: 123 TGEAAPGAWHLELPDLKSRIEGTQAASLHLPDDALLSAVLAKLFADRQLMPKPDLIAYLI 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            R++RS   A ++V  +D  +L++   ++R LAA VL +  Q
Sbjct: 183 LRIDRSFAAARRIVAALDAASLAQKRPLSRQLAAAVLDKEDQ 224


>gi|288958155|ref|YP_003448496.1| chromosomal replication initiator [Azospirillum sp. B510]
 gi|288910463|dbj|BAI71952.1| chromosomal replication initiator [Azospirillum sp. B510]
          Length = 235

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 117/209 (55%), Gaps = 5/209 (2%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAK 98
           +D LV  +   AV  +D WPSWP+  + L GP+G GK+ LA +W   S +  TR   +  
Sbjct: 20  EDFLVAPSNADAVAWLDRWPSWPAPALTLFGPAGCGKTHLAQVWRAHSHALVTRGDALES 79

Query: 99  SLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
            +   L+     V++ED DL+      +  LFH+ N   +    LL+ +R  P  W   L
Sbjct: 80  GVVPSLLAPANAVVVEDADLVAGKPEREEALFHLYNLAREQRGHLLLLSRKAPSRWRTKL 139

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
            DL SRLK A  V++  PDD  L  V+VK+FADRQ+    ++  Y++ RMERSL FA +L
Sbjct: 140 ADLRSRLKGAPAVEVRPPDDALLAAVLVKLFADRQLRPGMEVITYLLARMERSLDFARRL 199

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           V  +D+ +L+   G+T  LA EVL + Q+
Sbjct: 200 VAALDHASLAAHRGVTVPLAREVLSDLQR 228


>gi|170746927|ref|YP_001753187.1| chromosomal replication initiator DnaA [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653449|gb|ACB22504.1| Chromosomal replication initiator DnaA [Methylobacterium
           radiotolerans JCM 2831]
          Length = 236

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           ++N  P+    QL F  P      R+D LV  A E A  LI++WP WP  V++L GPSGS
Sbjct: 2   RENAPPR----QLAFDLPLDPRFGREDFLVGPANEAAYALIEAWPDWPDSVLVLTGPSGS 57

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLD-FNDTQLFHIINSI 133
           GKS LA IW++++ +          D++  + +   +++EDID  +  ++  LFH++N  
Sbjct: 58  GKSHLAAIWAERAHAWTLPAAELGADAVQHLVSNGALVVEDIDRAERLDEAALFHLLNRA 117

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +    +L+T+ T   + G+  PDL SRL+ A    I  PDD  L  V+VK+F DRQ+ +
Sbjct: 118 RERRCPVLLTSATGIDALGLGTPDLRSRLRLAPRSAIEAPDDALLRAVLVKLFVDRQLVV 177

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           D  +   +  R++RSL  A  +V ++D  AL RG  I+R LA  VL+
Sbjct: 178 DLGVIDALALRIDRSLGRARDVVAELDRDALGRGRRISRPLALAVLR 224


>gi|254464534|ref|ZP_05077945.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium
           Y4I]
 gi|206685442|gb|EDZ45924.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium
           Y4I]
          Length = 235

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 5/222 (2%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P    + R+D  V  +   AV L+D   +WPS  ++L GP G+GKS LA++W+
Sbjct: 3   QQLSFDLPAKPALGREDFFVAPSNAMAVALLDPQFAWPSGKLVLTGPKGAGKSHLAHVWA 62

Query: 86  DKSRSTRFSNIAK-SLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
            ++   R    AK +  ++      P+ +ED+  +  +      LFH+ N +     +L+
Sbjct: 63  SQT-GARIVPAAKLTAGAVPELAHGPIAVEDVPQIAADPERQNALFHLHNLVLAQGHALV 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT +  P  WG+ LPDL SR++AAT  ++  PDD  L  V+ K+F DRQI     +  Y+
Sbjct: 122 MTGQPAPNLWGLSLPDLQSRVQAATHAELQPPDDQLLAVVLAKLFNDRQITPKPDVIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           V  M+RS   A ++V ++D+L+L+    +TR LA  VL E++
Sbjct: 182 VAHMDRSFAAAAQMVRRLDHLSLAEKRSLTRPLAVRVLSESR 223


>gi|146276451|ref|YP_001166610.1| chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554692|gb|ABP69305.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 226

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 124/218 (56%), Gaps = 6/218 (2%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    +SR+D  V  A   A+  +D W  WP   ++LVGP GSGK+ LA++W+ 
Sbjct: 4   QLAFDLPMRPALSREDFFVSPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHVWAA 63

Query: 87  KS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           ++  R      +A++ D   +     V +ED + L      +  LFH+ N + +   +LL
Sbjct: 64  QAEARLIPAEALARA-DLPALAADGAVAVEDAERLGGERAAEEALFHLHNLMLERSGALL 122

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +TA T P  WG+ LPDL SR++AA V ++  PDD  L  ++VK+FADRQI +   L  ++
Sbjct: 123 ITADTPPRDWGLVLPDLKSRMQAAAVTRLEAPDDALLSAMLVKLFADRQIAVPGMLVPWL 182

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           V RM+RS   A  LV  +D  +L+    I+R +AAE+L
Sbjct: 183 VARMDRSCEAARALVAALDARSLAERRPISRQMAAELL 220


>gi|254459628|ref|ZP_05073044.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium
           HTCC2083]
 gi|206676217|gb|EDZ40704.1| chromosomal replication initiator, DnaA [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 234

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 125/216 (57%), Gaps = 3/216 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    + RDD  +  +   AV LID+  SW +  ++L+GP G+GK+ LA++W+ 
Sbjct: 4   QLSFDLPSRAALGRDDFFISPSNALAVVLIDTPESWNNGKLLLIGPKGAGKTHLAHVWAA 63

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMT 143
           +S +   +    + + +    + P+++ED+D +  +   +T LFH+ N       +LL+T
Sbjct: 64  QSGARIIAANTLTEEDVPNLVQTPLVIEDVDHIAGDRTFETALFHLHNLAQAEGRALLLT 123

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           A++ P  WG+CLPDL SRL+A     +  PDD  L  +++K+FADRQ+     +  ++  
Sbjct: 124 AKSQPHLWGLCLPDLASRLQAVQSATLEAPDDTLLTALLMKLFADRQLNPAPDVIPFLAL 183

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R++RS   A+++V+ +D  AL  G  ITR+ A+  L
Sbjct: 184 RIDRSFAAAQQIVEALDKAALDAGRAITRAFASAAL 219


>gi|110679324|ref|YP_682331.1| hypothetical protein RD1_2043 [Roseobacter denitrificans OCh 114]
 gi|109455440|gb|ABG31645.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 227

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 11/226 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL    P    + R D LV  +   AV LI+ W  WP R ++L GP+GSGK+ LA++W+
Sbjct: 3   EQLGLDLPGITALGRADFLVAPSNALAVALIEGWQDWPGRKLVLSGPAGSGKTHLAHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDS 138
             S     + I  + D +  D     R+ V +ED+  +  N   +T LFH+ N      +
Sbjct: 63  ALS----GAEICPARDLVGQDIPDLARRSVAIEDVPDIAGNAQAETALFHLHNLALAEGN 118

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           +LL T    P +W + LPDL SR++    V + LPDD  L  V+ K+FADRQ+    +L 
Sbjct: 119 ALLFTGEAAPRAWHLNLPDLKSRIEGTQAVSLDLPDDALLSAVLAKLFADRQLTPKPELI 178

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           AY++ R++RS   A ++V  +D  +L++   ++R LAA VL +  Q
Sbjct: 179 AYLILRIDRSFAAARRIVAALDAASLAQKRPLSRQLAAAVLDKEDQ 224


>gi|259416785|ref|ZP_05740705.1| chromosomal replication initiator, DnaA [Silicibacter sp.
           TrichCH4B]
 gi|259348224|gb|EEW60001.1| chromosomal replication initiator, DnaA [Silicibacter sp.
           TrichCH4B]
          Length = 225

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL F  P    + RDD  V  +   AV LID   +WPS  ++L GP GSGK+ LA++W+
Sbjct: 3   EQLSFDLPAKPALGRDDFFVAPSNAMAVALIDPAFAWPSGKLVLTGPKGSGKTHLAHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142
            +S +      A +   +      PV +ED+  +  +      LFH+ N +  +   L++
Sbjct: 63  KESGARVVPARALTEADVPDLASGPVAIEDVPAIAEDARAQKALFHLHNMVLTHGHRLML 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T R  P  WG+ L DL SR++AAT   +  PDD  L  V+ K+F DRQI     +  Y+V
Sbjct: 123 TGRPAPNLWGLGLADLQSRVQAATHAALEAPDDALLAVVLAKLFNDRQITPKPDVIPYLV 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            RM+RS   A  +VD++D LAL+    ++R+LA  ++   Q+
Sbjct: 183 GRMDRSFAAAAAVVDQLDRLALAEQRTLSRALAIRMMSSDQE 224


>gi|86138527|ref|ZP_01057100.1| hypothetical protein MED193_21806 [Roseobacter sp. MED193]
 gi|85824587|gb|EAQ44789.1| hypothetical protein MED193_21806 [Roseobacter sp. MED193]
          Length = 225

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P    + RDD  V  +   AV L+D    WPS  ++L GP+GSGK+ LA++W+
Sbjct: 3   QQLSFDLPAKTALGRDDFFVAPSNAMAVALLDPSFHWPSGKLVLTGPTGSGKTHLAHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142
            ++ +          D +    + PV++ED+  +  N      LFH+ N +     +L++
Sbjct: 63  SQTGAKILQACDLKEDRVPELAQAPVVVEDVPAIAGNPEAQNALFHLHNLVLSNGHALML 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T R  P  W + L DL SR++AAT  ++  PDD  L  V+ K+F DRQ+     +  Y+V
Sbjct: 123 TGRAAPNLWQLSLADLQSRMQAATHAELQAPDDALLAVVLAKLFNDRQVTPKADVIPYLV 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             M+RS   A  +V ++DNLALS G  ++R LA  ++ +
Sbjct: 183 AHMDRSFAAAAVIVKQLDNLALSEGRTLSRPLAVRLMSQ 221


>gi|149914374|ref|ZP_01902905.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149811893|gb|EDM71726.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 3/217 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL F  P    + RDD  V  A  +AV LI+ W  WPSR ++LVGP GSGK+ LA++W+
Sbjct: 4   EQLSFDLPVREALGRDDFFVSPANAEAVALIEGWRGWPSRKLLLVGPPGSGKTHLAHVWA 63

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142
             + +   +  A +   I       + +ED D +  +   +  LFH+ N       ++L 
Sbjct: 64  TLADARIIAAHALTRADIPALATGHIAVEDCDDIARDAAAEEALFHLHNLALAEGHTVLF 123

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TA   P  WG+ LPDL SR++      +  PDD  L  V++K+  DRQ+    +   Y+ 
Sbjct: 124 TAARAPQHWGLSLPDLASRMQGTPATILHEPDDTLLAAVLMKLMTDRQLSPSPETIPYLT 183

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +R++RS   A  +VD +D LAL+ G  I R+LAA+VL
Sbjct: 184 RRIDRSFEAARDVVDALDALALATGRPINRALAAKVL 220


>gi|85703787|ref|ZP_01034891.1| hypothetical protein ROS217_23637 [Roseovarius sp. 217]
 gi|85672715|gb|EAQ27572.1| hypothetical protein ROS217_23637 [Roseovarius sp. 217]
          Length = 224

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 3/217 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL F  P    + R+D  V  A  +AV +IDSW +WPSR +IL GP+GSGK+ LA++W+
Sbjct: 4   HQLSFDLPVRPALGREDFFVSPANAEAVAMIDSWETWPSRKLILAGPTGSGKTHLAHVWA 63

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142
             S +   +    +   I      P+ +ED +    N   +  LFH+ N       ++L+
Sbjct: 64  ALSGARIIAAADLADADIPALALSPLAIEDAEQTAGNRAAEEALFHLHNLSLAEGHTILL 123

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TA   P  W + LPDL SR++   V ++  PDD  L  V+ K+FADRQI        Y+ 
Sbjct: 124 TAERPPHLWPLRLPDLMSRMQGTLVTQLRAPDDALLAAVLTKLFADRQIAPSPDTVPYLS 183

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +R++RS     ++V+ +D  AL+    ITR+ AA+VL
Sbjct: 184 RRIDRSFAAVREVVETLDAAALAERRAITRAFAAQVL 220


>gi|299133727|ref|ZP_07026921.1| chromosomal replication initiator, DnaA [Afipia sp. 1NLS2]
 gi|298591563|gb|EFI51764.1| chromosomal replication initiator, DnaA [Afipia sp. 1NLS2]
          Length = 229

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 122/220 (55%), Gaps = 1/220 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +    QL    P    +SRDD L   +  QA+ L++ WP W +RV++LVGP G GKS LA
Sbjct: 3   RTPPRQLALELPHAESLSRDDYLEGPSNVQALGLVERWPDWSNRVMMLVGPEGCGKSHLA 62

Query: 82  NIWSDKSRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
            IW+  S +      A  S D         +++E ++   F++  +FH++N   + ++ +
Sbjct: 63  AIWAAISGARIVGAHALTSADVPASLATGALVVEHLEPGHFDERAIFHLLNLARETNAFV 122

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           LMTAR  P S+ + L D  SRL+A  VV +  PDD  L  ++VK  ADRQ+ +D+ +  Y
Sbjct: 123 LMTARMAPASFEIELRDAGSRLRAIPVVTVEPPDDQLLRALLVKFCADRQMAVDEGVVGY 182

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +   +ERS   A + V+ +D  AL +   ITR+LAA + +
Sbjct: 183 LATHIERSFAAARQAVELLDAEALRQRRPITRALAATLFR 222


>gi|99081697|ref|YP_613851.1| chromosomal replication initiator, DnaA [Ruegeria sp. TM1040]
 gi|99037977|gb|ABF64589.1| Chromosomal replication initiator DnaA [Ruegeria sp. TM1040]
          Length = 225

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL F  P    + RDD  V  +   AV LID   +WPS  ++L GP GSGK+ LA++W+
Sbjct: 3   EQLSFDLPAKPALGRDDFFVAPSNAMAVALIDPAFAWPSGKLVLTGPKGSGKTHLAHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLD--FNDTQLFHIINSIHQYDSSLLM 142
            +S +      A +   +      PV +ED+ D+ +       LFH+ N +  +   L++
Sbjct: 63  KESGARVVPAHALTEADVPELASGPVAIEDVPDIAEDALAQKALFHLHNMVLTHGHRLML 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T R  P  WG+ L DL SR++AAT   +  PDD  L  V+ K+F DRQI     +  Y+V
Sbjct: 123 TGRPAPNLWGLGLADLQSRVQAATHAALEAPDDALLAVVLAKLFNDRQITPKPDVIPYLV 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            RM+RS   A  +V+++D LAL+    ++R+LA  ++   Q+
Sbjct: 183 GRMDRSFAAAAAVVEQLDRLALAEQRTLSRALAIRLMSSDQK 224


>gi|114764028|ref|ZP_01443269.1| hypothetical protein 1100011001340_R2601_19280 [Pelagibaca
           bermudensis HTCC2601]
 gi|114543620|gb|EAU46634.1| hypothetical protein R2601_19280 [Roseovarius sp. HTCC2601]
          Length = 233

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 3/217 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL    P    + R+D  V  +   AV L+D+W SWP+  ++LVGPSG+GK+ LA++W+
Sbjct: 5   DQLPLPLPVRAALGREDYFVGQSNGLAVALLDNWQSWPNGKMVLVGPSGAGKTHLAHVWA 64

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142
            ++ +      +     I      P+ +ED D +  +   +  LFH+ N        LL+
Sbjct: 65  AETGAAIVPAASLPQADIPAHATAPICVEDGDRIAGDRPAEEALFHLHNLALAQRQPLLV 124

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TAR+ P  W + +PDL SR++      +  PDD  L  VI KM ADRQ      +  Y+V
Sbjct: 125 TARSAPSLWPLVIPDLKSRMEGTQTATLPDPDDTLLAAVIAKMLADRQCVPAADVIPYLV 184

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + M RS   A  LV  +D  A+ R  GITRSLA ++L
Sbjct: 185 RHMPRSFAMARALVTALDANAMGRPKGITRSLARDIL 221


>gi|126725675|ref|ZP_01741517.1| hypothetical protein RB2150_05703 [Rhodobacterales bacterium
           HTCC2150]
 gi|126704879|gb|EBA03970.1| hypothetical protein RB2150_05703 [Rhodobacterales bacterium
           HTCC2150]
          Length = 226

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL F  P    + R D  +  + + AV +++ W  WP R VIL G +GSGKS LA IW+
Sbjct: 3   EQLIFDLPVKQALGRADFFISPSNQHAVAMLEGWRDWPERKVILTGAAGSGKSHLAQIWA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDTQLFHIINSIHQYDSSLLMT 143
           D+  +         L  +       +++ED D  L    +T LFH+ N +      L++T
Sbjct: 63  DEVGARIVPATEVPLLMMEELDGSSIIVEDADQPLEMAAETGLFHLHNLVLASGGYLMVT 122

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           A+T P  WG+ L DL SR+ A     +  PD+  L+ V++K F D Q+    KL  Y+++
Sbjct: 123 AKTPPSQWGLKLADLNSRMLATPQAALLAPDEGLLQAVLMKHFDDHQLSATPKLLTYMLK 182

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           RM RSL  A ++VD+MD LALS+   ++  LA+EVL
Sbjct: 183 RMTRSLSAAREIVDEMDRLALSQKRKLSIELASEVL 218


>gi|220925387|ref|YP_002500689.1| Chromosomal replication initiator DnaA [Methylobacterium nodulans
           ORS 2060]
 gi|219949994|gb|ACL60386.1| Chromosomal replication initiator DnaA [Methylobacterium nodulans
           ORS 2060]
          Length = 233

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 116/216 (53%), Gaps = 4/216 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P       +D LV  + E A   I+SWP WP  V++L GPSGSGKS LA +W+ 
Sbjct: 7   QLTLDLPLDPRFGPEDFLVGPSNEAAYARIESWPHWPDPVLVLTGPSGSGKSHLAAVWAA 66

Query: 87  KSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLMT 143
           +S   R   IA+   + +  +     +++ED D     D   LFH++N   +  +SL++T
Sbjct: 67  QS-GARTVGIAEVTGAAVPQLAEHPALVIEDADRRSGRDEAALFHLLNLARERGTSLVIT 125

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
                  WG+  PDL SRL+ A  V I+ PD+  L  V+VK+F DRQ+ +D  +   +  
Sbjct: 126 GAGAVEGWGIATPDLRSRLRLAPTVAIAPPDEALLRAVLVKLFVDRQLVVDTSVVDALAL 185

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R++RSL  A  +V  +D   L+RG  ITR LA   L
Sbjct: 186 RIDRSLGRARDVVAALDREGLARGRRITRPLALATL 221


>gi|154253765|ref|YP_001414589.1| chromosomal replication initiator DnaA [Parvibaculum
           lavamentivorans DS-1]
 gi|154157715|gb|ABS64932.1| Chromosomal replication initiator DnaA [Parvibaculum
           lavamentivorans DS-1]
          Length = 226

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 120/216 (55%), Gaps = 4/216 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F         R+D LV    E AV LID+WP WP RVV L GP GSGK+ LA +W +
Sbjct: 4   QLAFELGHRPAFGREDFLVAPPNEAAVALIDAWPDWPDRVVALSGPEGSGKTHLAEVWRN 63

Query: 87  KSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLMT 143
            + +     S +A +    L+  R  ++LED+   D    + LFH++N + +  + LL+T
Sbjct: 64  AAGAVSLAPSALAGADVPALVAART-IILEDLAAPDAAAERALFHLVNLVREEGAFLLIT 122

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           AR       + LPDL SRLKA    ++  PDD  L  ++VK+F DRQ+ +   + A++  
Sbjct: 123 ARVPLSRLPLALPDLASRLKAVPQAELGPPDDALLAGILVKLFDDRQLRVAPAVIAWLAA 182

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R+ERS+  A   V ++D  +LS    IT  LAAE+L
Sbjct: 183 RIERSVRAARDAVAELDRASLSGKRPITVPLAAEIL 218


>gi|294676368|ref|YP_003576983.1| DnaA-like protein Hda [Rhodobacter capsulatus SB 1003]
 gi|294475188|gb|ADE84576.1| DnaA-like protein Hda [Rhodobacter capsulatus SB 1003]
          Length = 225

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 4/221 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-S 85
           QL    P  +   R+D  V  A   A+ L+D+  +W    ++L+GP G+GKS LA IW S
Sbjct: 4   QLPLPLPVRVAEGREDFFVAPANALALSLLDAPETWAQGRMLLLGPEGAGKSHLAAIWAS 63

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLM 142
           ++    R +   +      +     V++ED   L     ++  LFH++N         L+
Sbjct: 64  ERGAVIRPAADLRPETVADLAATGAVVIEDAQHLAGRAASEQALFHLLNLTAAEGGRCLI 123

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TA T P  WGV LPDL SRL A   V+I+ PD+  L  V+VK+FADRQ+ + + L  ++V
Sbjct: 124 TAPTPPRDWGVALPDLKSRLDATQSVRIAPPDEALLAAVLVKLFADRQLTVPQSLIDWLV 183

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            RMER+L  A  +V+ +D  AL+ G  ITR++AAEVL   Q
Sbjct: 184 LRMERALGTARAVVEALDARALAEGRAITRAMAAEVLDRLQ 224


>gi|126463196|ref|YP_001044310.1| chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104860|gb|ABN77538.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 226

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    +SR+D  +  A   A+  +D W  WP   ++LVGP GSGK+ LA+IW+ 
Sbjct: 4   QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63

Query: 87  KS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           ++  R      +A++ D   +     V +ED + L  +   +  LFH+ N + +   +LL
Sbjct: 64  QAEARLIPAEALARA-DLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALL 122

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +TA   P  WG+ LPDL SR++AA+V ++  PDD  L  ++VK+F DRQI +   L  ++
Sbjct: 123 ITAAGPPRDWGLGLPDLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWL 182

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           V RM+RS   A  LV  +D  +L+    I+R +AAE+L  T
Sbjct: 183 VARMDRSCEAARALVAALDARSLAERRPISRQMAAELLGLT 223


>gi|260426335|ref|ZP_05780314.1| chromosomal replication initiator, DnaA [Citreicella sp. SE45]
 gi|260420827|gb|EEX14078.1| chromosomal replication initiator, DnaA [Citreicella sp. SE45]
          Length = 233

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 120/219 (54%), Gaps = 7/219 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL    P    + R+D  V  +   AV L+D W +WP+R ++LVGP G+GK+ LA++W+
Sbjct: 5   DQLPLPLPVRPALGREDYFVSRSNGLAVALMDDWRNWPNRKLVLVGPHGAGKTHLAHVWA 64

Query: 86  DKSRSTRFSNIAKSLDSILIDT--RKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSL 140
            ++ +      AK L++  I      P+ +ED+  +  +   +  LFH+ N        L
Sbjct: 65  AETGAVIVP--AKGLETADIPALANGPLCVEDVPAIAGDRPAEEALFHLHNLTLAQGQPL 122

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           ++TA+T P  W + +PDL SR++      +  PDD  L  V+ K+ ADRQ      +  Y
Sbjct: 123 MVTAQTPPALWPLVIPDLKSRMEGTQTATLPNPDDTLLSAVLAKLLADRQCVPAPDVIPY 182

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +V+ M RS   A +LV  +D  A++R  GITR+LA EVL
Sbjct: 183 LVRHMPRSFAMARELVSALDAHAMTRPKGITRALAREVL 221


>gi|126739191|ref|ZP_01754885.1| hypothetical protein RSK20926_22364 [Roseobacter sp. SK209-2-6]
 gi|126719808|gb|EBA16516.1| hypothetical protein RSK20926_22364 [Roseobacter sp. SK209-2-6]
          Length = 235

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 122/217 (56%), Gaps = 11/217 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P    + RDD  V  +   AV L+D   +WPS  ++L GP+GSGKS LA++W+
Sbjct: 3   KQLSFDLPAKPALGRDDFFVAPSNAMAVALLDPSFAWPSGKLVLTGPAGSGKSHLAHVWA 62

Query: 86  DKSRSTRFSNIAKSLD---SILID-TRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDS 138
            +S +    NI ++ D    ++ D  +  V++ED+  +         LFH+ N +     
Sbjct: 63  SQSGA----NILQAADIHEELVPDFAQGSVVIEDVPRIAGDQVAQNALFHLHNLVLANGH 118

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           +L++T R  P  W + LPDL SR++AAT  ++  PDD  L  V+ K+F DRQ+     + 
Sbjct: 119 ALMLTGRAAPNLWQLTLPDLQSRVQAATHAELQPPDDALLSVVLAKLFNDRQVTPKPDVI 178

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
            Y+V  M+RS   A  +VD++D LALS G  ++R LA
Sbjct: 179 PYLVAHMDRSFAAAADIVDQLDRLALSEGRTLSRPLA 215


>gi|84686213|ref|ZP_01014108.1| hypothetical protein 1099457000256_RB2654_08417 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665740|gb|EAQ12215.1| hypothetical protein RB2654_08417 [Rhodobacterales bacterium
           HTCC2654]
          Length = 227

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 118/218 (54%), Gaps = 5/218 (2%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL F  P      R D  +  +   A+  ++ W  WPS  ++L GP GSGKS L  +W+
Sbjct: 3   HQLTFDLPVRTSRDRGDFFIADSNAVALAAVERWKDWPSAKMVLTGPDGSGKSHLVEVWA 62

Query: 86  DKSRSTRF-SNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
             + +    +    +LD+  +  R  V +ED D +      +  LFH+ N +     SLL
Sbjct: 63  TLTGAEIVPAGTLATLDTAALAGRS-VAVEDADRVAGQPEAEAALFHLHNLVLAEGGSLL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T+R  P  WG+ LPDL SR++  ++V +  PD+  +  V+VK+F DRQI +   L AY+
Sbjct: 122 LTSRAAPTRWGLDLPDLASRMEGTSMVALETPDEALISAVLVKLFDDRQIAVSPNLVAYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             R+ RSL  A   V ++D++AL+    +TR+LAA +L
Sbjct: 182 APRLPRSLAAARDFVARLDDVALAEKRDVTRALAARLL 219


>gi|149202229|ref|ZP_01879202.1| Chromosomal replication initiator, DnaA [Roseovarius sp. TM1035]
 gi|149144327|gb|EDM32358.1| Chromosomal replication initiator, DnaA [Roseovarius sp. TM1035]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 120/216 (55%), Gaps = 3/216 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    + R+   V  A  +AV +I+ W  WP R +IL GPSG+GK+ LA++W+ 
Sbjct: 5   QLSFDLPVRAALGREVFFVSPANAEAVAMIEGWQGWPGRKLILAGPSGAGKTHLAHVWAA 64

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMT 143
            S +   +    +   I     +P+++ED D +  +   +  LFH+ N +     SLL+T
Sbjct: 65  LSGAQMIAAKHIAQADIPNFASRPIVVEDADQIARDRPSEEALFHLHNLVLAEGHSLLLT 124

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           AR  P  W + LPDL SR++   + ++  PDD  L  V+ K+FADRQI        Y+ +
Sbjct: 125 ARQPPNLWPLVLPDLQSRMQGTMLTQLRAPDDTLLAAVLTKLFADRQIAPSPDTIPYLAR 184

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           RM+RS   A ++V  +D  AL+ G  ITR LA++VL
Sbjct: 185 RMDRSFDAAREVVAALDAAALAEGRAITRVLASQVL 220


>gi|298291115|ref|YP_003693054.1| chromosomal replication initiator, DnaA [Starkeya novella DSM 506]
 gi|296927626|gb|ADH88435.1| chromosomal replication initiator, DnaA [Starkeya novella DSM 506]
          Length = 241

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 124/217 (57%), Gaps = 3/217 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P     +RDD L   A E A+ LID+WP WPSR+V LVGP GSGKS LA I++ 
Sbjct: 5   QLPLDLPHADSRTRDDFLPGPANEGALALIDAWPDWPSRLVALVGPEGSGKSHLAAIFAA 64

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
           ++ +      A    ++        L+ ED+      +  LFH++N   +  + +L+TAR
Sbjct: 65  ETGAQVVPAAALDAAAVPALLASGALVVEDLGEGPVPEAALFHLMNLAGEQRAHVLVTAR 124

Query: 146 TFPVSWGVCLP--DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
             P +    +   DL SRL+A  VV +  PD++ L  V VK+FADRQI  D+ L  Y++ 
Sbjct: 125 RAPAALAEAIATRDLASRLRAMPVVSLGAPDEELLAAVAVKLFADRQIVPDEALLNYLLP 184

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R+ERS+     +V ++D  AL+R   +TR+LA+E+L+
Sbjct: 185 RVERSIAGLRDIVGELDREALARKRPLTRALASELLR 221


>gi|197105152|ref|YP_002130529.1| DnaA-related protein [Phenylobacterium zucineum HLK1]
 gi|196478572|gb|ACG78100.1| DnaA-related protein [Phenylobacterium zucineum HLK1]
          Length = 273

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 118/222 (53%), Gaps = 12/222 (5%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL     R    SRD+  V  +  QAV L+D+WP+W  R + LVGP GSGK+ LA  W+ 
Sbjct: 54  QLRLRLGRPAAYSRDEFAVGPSNAQAVALLDAWPAWHGRALALVGPEGSGKTHLARAWAQ 113

Query: 87  KSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            + +         LD    D R    +P LLED+D        LFH+IN   +    LL+
Sbjct: 114 AAGAV-------VLDREDPDLRQADGRPALLEDVDQ-GVPGEALFHLINLAAREGGGLLL 165

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TART P +W   LPDL SRL A  V +I  PDD  LE V+ K F DR I   +++  Y++
Sbjct: 166 TARTRPAAWPAALPDLRSRLNALAVAEIEPPDDAVLEGVLRKFFRDRNIRPPEEVYPYLL 225

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +RM RS+  A ++V K+D         +TR LA ++L+   Q
Sbjct: 226 RRMGRSIPDAREIVRKLDEAGDGELKPVTRVLARQILEGDSQ 267


>gi|163745973|ref|ZP_02153332.1| hypothetical protein OIHEL45_10313 [Oceanibulbus indolifex HEL-45]
 gi|161380718|gb|EDQ05128.1| hypothetical protein OIHEL45_10313 [Oceanibulbus indolifex HEL-45]
          Length = 226

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 3/217 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL  + P    + RD   V  +   A+ +ID W  W    + L GP GSGK+ L ++W+
Sbjct: 3   HQLGLNLPSRTALGRDAFFVAPSNAMAMAMIDGWRGWAGGKLALTGPQGSGKTHLTHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLM 142
           D S +   S  A     I    R PV +ED+  +   D   T+LFH+ N +     +LL+
Sbjct: 63  DLSGAQIISASALQTADIPALARGPVAVEDVHQIAQDDAAQTELFHLHNLVLAEGQALLL 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T       WG+ LPDL SR++ AT V++  PDD  L  ++VK+ ADRQ+    +L  Y++
Sbjct: 123 TGTGVVAHWGLTLPDLVSRMRGATAVEMDAPDDALLSALLVKLLADRQLTPKPELINYLM 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            RM+RS   A  LVD++D  +L++   +TR+LAA+VL
Sbjct: 183 TRMDRSFAAAIALVDRLDAASLAQKRPLTRALAAQVL 219


>gi|254487899|ref|ZP_05101104.1| chromosomal replication initiator, DnaA [Roseobacter sp. GAI101]
 gi|214044768|gb|EEB85406.1| chromosomal replication initiator, DnaA [Roseobacter sp. GAI101]
          Length = 223

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 11/221 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL  + P    + RDD  V  +   A  +ID W +W  R + L GP GSGK+ L ++W+
Sbjct: 3   QQLGLALPSRAALGRDDFFVAPSNAIAAAMIDGWRTWAGRKLALTGPPGSGKTHLTHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDS 138
            +S     + I ++ D +  D     R  V +ED+ L+  +    T LFH+ N +     
Sbjct: 63  TQS----GARIIQARDLLRADIPDLARSCVAVEDVPLIARHPEAQTALFHLHNLVLAEGH 118

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           SLL+T       W + LPDL SR++AA  V +  PDD  L  V+ K+ ADRQ+     L 
Sbjct: 119 SLLLTGAPAVAQWRLTLPDLASRMQAAGAVALEAPDDMLLTAVLAKLLADRQLTPRPDLI 178

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            Y++ RM+RS   A  LV ++D  +L++   +TRSLAA+VL
Sbjct: 179 PYLLPRMDRSFAAAGDLVARLDAASLAQKKPVTRSLAAQVL 219


>gi|154247057|ref|YP_001418015.1| chromosomal replication initiator, DnaA [Xanthobacter autotrophicus
           Py2]
 gi|154161142|gb|ABS68358.1| chromosomal replication initiator, DnaA [Xanthobacter autotrophicus
           Py2]
          Length = 244

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 17/228 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +  QL    P    + R+D L       A+ LID++P WP+RVV +VGP G+GKS L+ 
Sbjct: 6   GRPRQLPLDLPAYPALRREDFLAAPGNAAALALIDAFPEWPARVVCIVGPEGAGKSHLSA 65

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPV---------LLEDIDLLDFNDTQLFHIINSI 133
           I++++S        A++LD+  + TR+ V         +LED+    F++  LFH++N  
Sbjct: 66  IFAERSG-------ARTLDARAL-TREGVPEALASGALVLEDLSAGTFSEAALFHLLNLA 117

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +  + LLMTART P S+ +   DL SRL+A  V +I+  DD  L  V+VK+FADRQ+ +
Sbjct: 118 REQQAYLLMTARTPPSSFSLATADLASRLRAVPVFEIAPADDALLAAVLVKLFADRQLSV 177

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           D+    Y++ RM+R++  A+++VD +D  AL+    +TR+LAA+VLKE
Sbjct: 178 DEATVQYLLMRMQRTVAGAKRIVDALDTAALAARRPVTRALAAQVLKE 225


>gi|159043293|ref|YP_001532087.1| chromosomal replication initiator [Dinoroseobacter shibae DFL 12]
 gi|157911053|gb|ABV92486.1| chromosomal replication initiator [Dinoroseobacter shibae DFL 12]
          Length = 229

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +  +QL F  P    + R D +      +A+  ID+WP WP+  ++L GP  SGK+ LA 
Sbjct: 2   SAPQQLAFPLPAWPALGRADFIAAPCNAEALARIDAWPDWPAPRLVLCGPPASGKTHLAQ 61

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID-LLDFNDTQ--LFHIINSIH-QYDS 138
           IW+ K+R+        +LD ++ +    V +ED D L    + Q  LFH+ N +  + + 
Sbjct: 62  IWAAKARAEILPARLLTLD-MVAELPAQVAIEDADQLFGMGEAQEALFHLHNRLAAEAEG 120

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           +LL+T    P  W + LPDL SRL+A  + ++S PDD  L  ++ K+F DRQI     L 
Sbjct: 121 ALLITGAAPPARWSIALPDLASRLQAMPLAQLSAPDDALLGALLAKLFEDRQIAPPPNLI 180

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++ RMERS   A  +V ++D+ ALS    I  +LAAE+L
Sbjct: 181 PFLLIRMERSFAAARAVVAELDHRALSERRAIGTALAAEIL 221


>gi|254476295|ref|ZP_05089681.1| chromosomal replication initiator, DnaA [Ruegeria sp. R11]
 gi|214030538|gb|EEB71373.1| chromosomal replication initiator, DnaA [Ruegeria sp. R11]
          Length = 271

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P    + RDD  V  +   AV ++D   +WP   ++L GP  SGK+ L ++W+
Sbjct: 3   QQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFNDTQ--LFHIINSIHQYDSSLLM 142
             S +        +  ++      P+ +ED+ D+ D  + Q  LFH+ N +     +L++
Sbjct: 63  SNSGAQILPAWQLTKAAVPQLAEGPIAIEDVPDIADNTEAQDALFHLHNLVLANGHALML 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T R  P  WG+ LPDL SR++ A   ++  PDD  L  V+ K+F DRQI     +  Y+V
Sbjct: 123 TGRAAPRLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYLV 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             M+RS   A ++V+++D L+L+ G  ++R+LA +++ +  Q
Sbjct: 183 AHMDRSFAAASQIVEELDQLSLAEGRMVSRALAVQLMSDRPQ 224


>gi|77464354|ref|YP_353858.1| hypothetical protein RSP_0780 [Rhodobacter sphaeroides 2.4.1]
 gi|332559245|ref|ZP_08413567.1| hypothetical protein RSWS8N_09320 [Rhodobacter sphaeroides WS8N]
 gi|77388772|gb|ABA79957.1| hypothetical protein with ATP/GTP-binding site [Rhodobacter
           sphaeroides 2.4.1]
 gi|332276957|gb|EGJ22272.1| hypothetical protein RSWS8N_09320 [Rhodobacter sphaeroides WS8N]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 6/221 (2%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    +SR+D  +  A   A+  +D W  WP   ++LVGP GSGK+ LA+IW+ 
Sbjct: 4   QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63

Query: 87  KS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           ++  R      +A++ D   +     V +ED + L  +   +  LFH+ N + +   +LL
Sbjct: 64  QAEARLIPAEALARA-DLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALL 122

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +TA   P  WG+ L DL SR++AA+V ++  PDD  L  ++VK+F DRQI +   L  ++
Sbjct: 123 ITAAGPPRDWGLGLADLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWL 182

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           V RM+RS   A  LV  +D  +L+    I+R +AAE+L  T
Sbjct: 183 VARMDRSCEAARALVAALDARSLAERRPISRQMAAELLGLT 223


>gi|83593498|ref|YP_427250.1| regulatory inactivation of DnaA Hda protein [Rhodospirillum rubrum
           ATCC 11170]
 gi|83576412|gb|ABC22963.1| regulatory inactivation of DnaA Hda protein [Rhodospirillum rubrum
           ATCC 11170]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 2/222 (0%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P    + R+  LV +    AV L+++WP WP+    + GP+G+GK+ LA +++ 
Sbjct: 6   QLPLDLPWRPALGREHFLVAACNASAVALVEAWPHWPAPAACIHGPTGAGKTHLAQVFAT 65

Query: 87  KSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
           ++ +     + I  +    L +  +  ++ED D     +  LFH++N+  Q   SLL+TA
Sbjct: 66  RAAAVVLDPAVILGTDPLTLFEGGRAAVIEDADRAGLPEATLFHLLNAARQRGGSLLLTA 125

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
            + P  WGV L DL SRL A     +  PDD+ +  V++K+F+DR + +      Y++ R
Sbjct: 126 LSPPARWGVHLADLRSRLAALPAEGLCEPDDELMAAVLLKLFSDRGLDVAPGAIGYLLPR 185

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           MERS   A  LV   D LAL  G  +T  L  ++L    + D
Sbjct: 186 MERSFAAARDLVVHADALALREGRAVTVPLLRQLLATPDRAD 227


>gi|296446895|ref|ZP_06888831.1| Chromosomal replication initiator DnaA [Methylosinus trichosporium
           OB3b]
 gi|296255570|gb|EFH02661.1| Chromosomal replication initiator DnaA [Methylosinus trichosporium
           OB3b]
          Length = 232

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 116/199 (58%), Gaps = 4/199 (2%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
           LV      A  +I  WP WP   ++L+GP+G+GKS L  I++ +S +  F + +  +   
Sbjct: 31  LVSPCNRAAFEMISRWPDWPDPALLLLGPAGAGKSHLCAIFAQRSDAL-FVDPSDLMTPQ 89

Query: 104 LIDTRKP--VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            +    P   +++ +D ++ ++T LFH++N + +  +SLL+  R  P    V LPDL SR
Sbjct: 90  RLAASPPRAAIVDGLDAVE-DETALFHLMNFLRESGASLLLCGRRPPSGETVALPDLLSR 148

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           L+ A VV+I  PDDD +  V+ K+  DRQ+ +D  L  Y+  R+ERSL  A   V  +D 
Sbjct: 149 LRRAPVVEIGAPDDDLIRAVLEKLLRDRQLLVDPGLVDYLALRLERSLDAARAFVRLLDE 208

Query: 222 LALSRGMGITRSLAAEVLK 240
            AL+RG  +TR+LA E+L+
Sbjct: 209 EALARGRRVTRALAGELLE 227


>gi|83949532|ref|ZP_00958265.1| hypothetical protein ISM_00520 [Roseovarius nubinhibens ISM]
 gi|83837431|gb|EAP76727.1| hypothetical protein ISM_00520 [Roseovarius nubinhibens ISM]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P    + RDD  V ++   AV +I++W SWP+R ++L GPSG+GK+ LA++W+
Sbjct: 3   QQLSFDLPAVPAMGRDDFFVSASNAAAVAMIETWQSWPARKLMLRGPSGAGKTHLAHVWA 62

Query: 86  DKS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSL 140
             S  R    S++A++   I      PV +ED+  +     Q   LFH+ N +    +SL
Sbjct: 63  SLSGARIIAASDLAEA--DIPTLASGPVAVEDLWQITGERAQERALFHLHNLVLAEGNSL 120

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+        + LPDL SR++    V+I  PDD  L  V++K+FADRQ+    +   Y
Sbjct: 121 LITSSDDSALSDIHLPDLASRMEGTPGVRIEPPDDALLAAVLMKLFADRQLRPTPETLPY 180

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           IV RM R+   A  LV+ +D LAL  G  I R LAA  L   Q
Sbjct: 181 IVPRMPRAFAAARNLVETLDQLALDTGKPINRRLAATALDNLQ 223


>gi|218530297|ref|YP_002421113.1| chromosomal replication initiator DnaA [Methylobacterium
           chloromethanicum CM4]
 gi|218522600|gb|ACK83185.1| chromosomal replication initiator DnaA [Methylobacterium
           chloromethanicum CM4]
          Length = 252

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 129/225 (57%), Gaps = 6/225 (2%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P       +D LV  + E+A  LI++WP WP  V +L GP GSGKS LA+IW+
Sbjct: 8   KQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSHLASIWA 67

Query: 86  DKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLM 142
            ++++   S    ++D +  LI +   +++ED+D     D + LFH++N   +    +L+
Sbjct: 68  TRAQAWTVSAADVAMDRVSHLI-SNGALVVEDVDRAAGRDESALFHLLNLARERRFPVLL 126

Query: 143 TARTFPV-SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           TA   PV  +G+ + DL SRL+ A   +I  PDD  L+ VIVK+FADRQ+ ID  +   +
Sbjct: 127 TA-CGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSVVDAL 185

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             R++RSL    ++V ++D  AL R   ITR LA  VL   +  D
Sbjct: 186 ALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230


>gi|254561253|ref|YP_003068348.1| hypothetical protein METDI2832 [Methylobacterium extorquens DM4]
 gi|254268531|emb|CAX24488.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 252

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 6/225 (2%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P       +D LV  + E+A  LI++WP WP  V +L GP GSGKS LA+IW+
Sbjct: 8   KQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSHLASIWA 67

Query: 86  DKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLM 142
            ++++   S    ++D +  LI +   +++ED+D     D   LFH++N   +    +L+
Sbjct: 68  TRAQAWTVSAADVAMDRVSHLI-SNGALVVEDVDRAAGRDEAALFHLLNLARERRFPVLL 126

Query: 143 TARTFPV-SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           TA   PV  +G+ + DL SRL+ A   +I  PDD  L+ VIVK+FADRQ+ ID  +   +
Sbjct: 127 TA-CGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSVVDAL 185

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             R++RSL    ++V ++D  AL R   ITR LA  VL   +  D
Sbjct: 186 ALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230


>gi|163851490|ref|YP_001639533.1| chromosomal replication initiator DnaA [Methylobacterium extorquens
           PA1]
 gi|240138655|ref|YP_002963127.1| hypothetical protein MexAM1_META1p2048 [Methylobacterium extorquens
           AM1]
 gi|163663095|gb|ABY30462.1| chromosomal replication initiator DnaA [Methylobacterium extorquens
           PA1]
 gi|240008624|gb|ACS39850.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 252

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 6/225 (2%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P       +D LV  + E+A  LI++WP WP  V +L GP GSGKS LA+IW+
Sbjct: 8   KQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSHLASIWA 67

Query: 86  DKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLM 142
            ++++   S    ++D +  LI +   +++ED+D     D   LFH++N   +    +L+
Sbjct: 68  TRAQAWTVSAADVAMDRVSHLI-SNGALVVEDVDRAAGRDEAALFHLLNLARERRFPVLL 126

Query: 143 TARTFPV-SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           TA   PV  +G+ + DL SRL+ A   +I  PDD  L+ VIVK+FADRQ+ ID  +   +
Sbjct: 127 TA-CGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSVVDAL 185

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             R++RSL    ++V ++D  AL R   ITR LA  VL   +  D
Sbjct: 186 ALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230


>gi|209964848|ref|YP_002297763.1| hypothetical protein RC1_1547 [Rhodospirillum centenum SW]
 gi|209958314|gb|ACI98950.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 238

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +NK+  L       +G +  D LV      AV  +D+WP WP+  ++L GP GSGKS LA
Sbjct: 4   ENKQLSLDLGHRSAMGEA--DFLVAPGNADAVAWLDAWPDWPAPALVLFGPPGSGKSHLA 61

Query: 82  NIWSDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQY 136
            IW  +SR+         LDS+  L+   + V+L+    +  +  +   LFH+ N+  + 
Sbjct: 62  QIWRARSRAVLVEPDDLHLDSVPDLLRPMRTVVLDRAHEVAGDPARERVLFHLYNAAKEI 121

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
             SLL+ A   PV+W + LPDL SRL AA  V ++ PDD  L  V+VK+FADRQI + + 
Sbjct: 122 GGSLLLLADNAPVNWVLRLPDLRSRLLAAPAVGMAAPDDALLMAVLVKLFADRQIRVGED 181

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +  +++ R ERS   A ++V+ +D  AL     IT      VL++  +
Sbjct: 182 VIRWLMTRTERSFANARRVVEALDRAALEAKKPITVPFCKAVLEQDAE 229


>gi|84501589|ref|ZP_00999761.1| hypothetical protein OB2597_15345 [Oceanicola batsensis HTCC2597]
 gi|84390210|gb|EAQ02769.1| hypothetical protein OB2597_15345 [Oceanicola batsensis HTCC2597]
          Length = 226

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 6/223 (2%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
           L  + PR  G++R D +V  +   A+ +ID W  WP   ++L GP GSGK+ LA+IW+ +
Sbjct: 5   LPLTHPRLPGLTRSDFVVAPSNAVALAMIDQWRDWPGGKLVLTGPPGSGKTHLAHIWAAE 64

Query: 88  SRSTRFSNIAKSLDSILID--TRKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMT 143
           + +   +  A+ L+   +       +++ED D +     Q  LFH+ N + +    LL+T
Sbjct: 65  ANARILA--ARDLERAAVPELASTALVVEDADAIPDAAPQDALFHLHNLMREAQRPLLLT 122

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
                 SW + LPDL SRL+ A    +  PDD  L  V+VK+F +RQ+ +  ++  Y+++
Sbjct: 123 GSRAVASWPLTLPDLKSRLQGAQSAVLDRPDDTLLNAVLVKLFIERQLQVSPQVVHYLLR 182

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           RM+RS   A ++V+ +D  +L++   IT  LAAEVL + +  +
Sbjct: 183 RMDRSFDAARRVVEALDFASLAQRRAITTRLAAEVLDKIEGAE 225


>gi|188581279|ref|YP_001924724.1| chromosomal replication initiator DnaA [Methylobacterium populi
           BJ001]
 gi|179344777|gb|ACB80189.1| chromosomal replication initiator DnaA [Methylobacterium populi
           BJ001]
          Length = 252

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 6/225 (2%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P       +D LV  + E+A  LI++WP WP  V +L GP GSGKS LA+IW+
Sbjct: 8   QQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSHLASIWA 67

Query: 86  DKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLM 142
            ++++   S  ++A +  S LI +   +++ED+D     D   LFH++N   +    +L+
Sbjct: 68  TRAQAWTVSAADVAGTNVSHLI-SNGALVVEDVDREAGRDEAALFHLLNLARERRFPVLL 126

Query: 143 TARTFPV-SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           TA   PV  +G+ + DL SRL+ A   +I  PDD  L+ VIVK+FADRQ+ ID  +   +
Sbjct: 127 TA-CGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSVVDAL 185

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             R++RSL    ++V ++D  AL R   ITR LA  VL      D
Sbjct: 186 ALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMAAAD 230


>gi|89070130|ref|ZP_01157459.1| hypothetical protein OG2516_02718 [Oceanicola granulosus HTCC2516]
 gi|89044247|gb|EAR50393.1| hypothetical protein OG2516_02718 [Oceanicola granulosus HTCC2516]
          Length = 223

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/215 (37%), Positives = 114/215 (53%), Gaps = 2/215 (0%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F +P  +    D   V  A   A  ++     WP   ++L GP GSGK+ LA +++ 
Sbjct: 4   QLSFEWPHEVTFGEDSYYVSEANGTAYAMVTRPGDWPEGKLVLAGPQGSGKTHLARLFAA 63

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLMTAR 145
           ++ +      A +    L +T   V+LED D L     + +FH+ NS+     +LL TA 
Sbjct: 64  RTGALILDAPALAGTEPLPETGD-VVLEDADRLPRQAEEWVFHLHNSLAAAGGALLFTAA 122

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P  W V LPDL SRL+AATVVKI  PDD  L  V+ K+  DRQ+     L  ++V RM
Sbjct: 123 APPTRWAVALPDLVSRLQAATVVKIGDPDDALLAAVLRKILRDRQLAYADGLIPWLVPRM 182

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            RS   A + +D ++  AL RG  +T +LA EVL+
Sbjct: 183 TRSFAAARRTIDVLEAAALGRGKRLTINLAREVLQ 217


>gi|83954040|ref|ZP_00962760.1| hypothetical protein NAS141_17079 [Sulfitobacter sp. NAS-14.1]
 gi|83841077|gb|EAP80247.1| hypothetical protein NAS141_17079 [Sulfitobacter sp. NAS-14.1]
          Length = 227

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 120/217 (55%), Gaps = 3/217 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL    P    + RDD  V  +   AV +I+ W +W  R ++L GP GSGK+ LA++W+
Sbjct: 3   QQLGLDLPSRPALGRDDFFVAPSNAIAVAMIEGWQAWAGRKMVLTGPPGSGKTHLAHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFN--DTQLFHIINSIHQYDSSLLM 142
           + S +        +   I    + P+ +E++ D+   N  +T LFH+ N +     SLL+
Sbjct: 63  NLSGAGIIDARDIATGDIPALAQGPLAVENVPDIAGDNAAETHLFHLHNLVLAEGHSLLL 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T       WG+ LPDL SR++AAT   +  PDD  L  V+ K+ ADRQ+     +  Y++
Sbjct: 123 TGTPAVPQWGLHLPDLTSRMRAATAAALEAPDDSLLTAVMAKLLADRQLTPKPDVIPYLL 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            RM+RS   A +LV  +D  +L++   +TR+LAA+VL
Sbjct: 183 LRMDRSFAAAGELVAALDAASLAQQKPVTRALAAQVL 219


>gi|163740900|ref|ZP_02148293.1| hypothetical protein RG210_13706 [Phaeobacter gallaeciensis 2.10]
 gi|161385891|gb|EDQ10267.1| hypothetical protein RG210_13706 [Phaeobacter gallaeciensis 2.10]
          Length = 256

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 3/219 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P    + RDD  V  +   AV ++D   +WP   ++L GP  SGK+ L ++W+
Sbjct: 3   QQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFNDTQ--LFHIINSIHQYDSSLLM 142
             S +        + + +      P+ +ED+ D+ D    Q  LFH+ N +     +L++
Sbjct: 63  SNSGAQIIPAWQLTKEDVPHLADGPIAVEDVPDIADSAPAQDALFHLHNLVLANGHALML 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T R  P  WG+ LPDL SR++ A   ++  PDD  L  V+ K+F DRQI     +  Y+V
Sbjct: 123 TGRAAPHLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYLV 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             M+RS   A ++V+++D L+L+ G  ++R LA E++ +
Sbjct: 183 AHMDRSFAAASQIVEELDRLSLTEGRMVSRVLAVELMSD 221


>gi|163737419|ref|ZP_02144836.1| Chromosomal replication initiator, DnaA [Phaeobacter gallaeciensis
           BS107]
 gi|161388945|gb|EDQ13297.1| Chromosomal replication initiator, DnaA [Phaeobacter gallaeciensis
           BS107]
          Length = 256

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 3/219 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P    + RDD  V  +   AV ++D   +WP   ++L GP  SGK+ L ++W+
Sbjct: 3   QQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFNDTQ--LFHIINSIHQYDSSLLM 142
             S +        + + +      P+ +ED+ D+ D    Q  LFH+ N +     +L++
Sbjct: 63  SNSGAQIIPAWQLTKEDVPHLADGPIAVEDVPDIADSAPAQDALFHLHNLVLANGHALML 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T R  P  WG+ LPDL SR++ A   ++  PDD  L  V+ K+F DRQI     +  Y+V
Sbjct: 123 TGRAAPHLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYLV 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             M+RS   A ++V+++D L+L+ G  ++R LA E++ +
Sbjct: 183 AHMDRSFAAASQIVEELDRLSLTEGRMVSRVLAVELMSD 221


>gi|83942870|ref|ZP_00955330.1| hypothetical protein EE36_11853 [Sulfitobacter sp. EE-36]
 gi|83845878|gb|EAP83755.1| hypothetical protein EE36_11853 [Sulfitobacter sp. EE-36]
          Length = 227

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 119/217 (54%), Gaps = 3/217 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL    P    + RDD  V  +   AV +I+ W +W  R ++L GP GSGK+ LA++W+
Sbjct: 3   QQLGLDLPSRPALGRDDFFVAPSNAIAVAMIEGWQAWAGRKMVLTGPPGSGKTHLAHVWA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFN--DTQLFHIINSIHQYDSSLLM 142
           + S +        +   I    + P+ +E++ D+   N  +T LFH+ N +     SLL+
Sbjct: 63  NLSGAGIIDARDIATGDIPALAQGPLAVENVPDIAGDNAAETHLFHLHNLVLAEGHSLLL 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T       WG+ LPDL SR++AAT   +  PDD  L  V+ K+ ADRQ+     +  Y++
Sbjct: 123 TGTPAVPQWGLHLPDLTSRMRAATAAALEAPDDSLLTAVMAKLLADRQLTPKPDVIPYLL 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            RM+RS   A  LV  +D  +L++   +TR+LAA+VL
Sbjct: 183 LRMDRSFAAAGDLVAALDAASLAQQKPVTRALAAQVL 219


>gi|119384046|ref|YP_915102.1| hypothetical protein Pden_1301 [Paracoccus denitrificans PD1222]
 gi|119373813|gb|ABL69406.1| conserved hypothetical protein [Paracoccus denitrificans PD1222]
          Length = 229

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 5/213 (2%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98
           SRDD L+ +A   A+ ++D+   WP   ++L+G  GSGKS L   W+ +  +        
Sbjct: 16  SRDDFLITAANRDALAMLDAPGCWPQGRLLLIGGPGSGKSHLVGFWAAEHGAQICHGWTL 75

Query: 99  SLDSI--LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGV 153
           + + +  L+     +++ED   +  N T    LFH+ N      + LL+TAR+ P  WGV
Sbjct: 76  APEGVDELVQPGAALVVEDAHEIGGNPTAEQGLFHLWNLAGARGALLLITARSAPRDWGV 135

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            LPDL SRL+ A    +  PDD  L  V+VK+FADRQI +  ++  ++V RMER L  A 
Sbjct: 136 ALPDLRSRLETAAQAILGPPDDAMLTAVLVKLFADRQIQVAPEVVDWLVLRMERDLDMAR 195

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           +LV  +D  +L+    ITR LAAE+L +    D
Sbjct: 196 RLVAAIDRESLADRRAITRRLAAELLDKLAPVD 228


>gi|209885461|ref|YP_002289318.1| chromosomal replication initiator, DnaA [Oligotropha
           carboxidovorans OM5]
 gi|209873657|gb|ACI93453.1| chromosomal replication initiator, DnaA [Oligotropha
           carboxidovorans OM5]
          Length = 230

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 122/215 (56%), Gaps = 1/215 (0%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P    +SRDD L   +  QA+ LID WP W +RV++LVGP G GKS LA IW+ 
Sbjct: 9   QLALDLPHAESLSRDDYLEGPSNAQALALIDRWPDWTNRVMMLVGPEGCGKSHLAAIWAA 68

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
           ++ +      A +   +        L+ E ++   F++  +FH++N   + ++ +LMTAR
Sbjct: 69  EAGARIVGAHALTPQDVPGALATGALVVEHLEPGYFDERAVFHLLNLARETNAFVLMTAR 128

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P S+ V L D  SRL+A  VV +  PDD  L  ++VK  ADRQ+ +D+ + +Y+  R+
Sbjct: 129 AAPASFEVELRDAGSRLRAIPVVSVEPPDDQLLRALLVKFCADRQMAVDESVVSYLATRI 188

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ERS   A   V+++D  AL     +TR+LAA + +
Sbjct: 189 ERSFAAARDAVEQLDAEALRLRRPVTRALAAALFR 223


>gi|126728914|ref|ZP_01744729.1| hypothetical protein SSE37_08803 [Sagittula stellata E-37]
 gi|126710844|gb|EBA09895.1| hypothetical protein SSE37_08803 [Sagittula stellata E-37]
          Length = 233

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 113/218 (51%), Gaps = 5/218 (2%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL    P    + R+D  V  A   AV LID W  WP   +++ GP GSGK+ LA++W+
Sbjct: 5   KQLPLPLPAREALGREDFFVSEANAMAVALIDRWSEWPGAKMVICGPRGSGKTHLAHVWA 64

Query: 86  DKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
            K    R  N      + + D    P+ +ED++ +  +   +  LFH+ N        LL
Sbjct: 65  -KLSGARILNADTLAGADIPDLAAAPLCVEDVERIAGDRPAEEALFHLHNLALAQGHQLL 123

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MTA   P  W + LPDL SR+  A V ++  PDD  L  ++ K FADRQI    ++ +Y+
Sbjct: 124 MTAEREPSLWPLVLPDLKSRIMGAQVARLGAPDDALLTALLAKQFADRQITPGPEVLSYL 183

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            + M RS   A  +V  +D  +L+    +TRS+AA VL
Sbjct: 184 TRHMPRSHAAARDVVAALDESSLADKKRVTRSMAAAVL 221


>gi|217977144|ref|YP_002361291.1| chromosomal replication initiator DnaA [Methylocella silvestris
           BL2]
 gi|217502520|gb|ACK49929.1| chromosomal replication initiator DnaA [Methylocella silvestris
           BL2]
          Length = 240

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 114/204 (55%), Gaps = 1/204 (0%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96
           G + +D  +  + E A ++I+ WP W +  +IL+GP+GSGKS L  IW+ K+ +T  +  
Sbjct: 15  GFAAEDFFISGSNESAYQMIERWPDWSNSALILIGPAGSGKSHLGAIWAAKAGATTIAAA 74

Query: 97  AK-SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                +   +     +L+ED++ +     QLFH++N        L+MTAR  P      L
Sbjct: 75  TLAGREPAALVAAGALLIEDLEAIGPGQAQLFHLVNLALPRRLPLVMTARRPPGPDNFDL 134

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
           PDL SRL+ A  V I  PDD  +  V+VK+  DRQ+ +D +L  Y   R++ SL  A   
Sbjct: 135 PDLLSRLRLAPSVSIGAPDDALMRMVLVKLLMDRQLVVDVRLVDYAALRLDYSLEAARSF 194

Query: 216 VDKMDNLALSRGMGITRSLAAEVL 239
           V+K+D  AL+R   +TR +AAEVL
Sbjct: 195 VEKLDREALARKSRVTRQIAAEVL 218


>gi|89053548|ref|YP_508999.1| chromosomal replication initiator, DnaA [Jannaschia sp. CCS1]
 gi|88863097|gb|ABD53974.1| Chromosomal replication initiator DnaA [Jannaschia sp. CCS1]
          Length = 233

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 11/206 (5%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    + RDD  V +A   AV  ID+W  WP+  ++L GP  SGK+ LA++W+ 
Sbjct: 4   QLTFDLPLRPAMGRDDFFVSAANAGAVAQIDAWEGWPTAKLVLCGPPASGKTHLAHVWA- 62

Query: 87  KSRSTRFSNIAKSLDSILIDTR---KPVLL----EDIDLLDFNDTQLFHIINSIHQYDSS 139
              +T  + I ++ D +    R    P L+    EDI      +  +FHI N++    + 
Sbjct: 63  ---ATTGAQIVQATDIVSQIERLSTAPALVIEDAEDISEDALAEEGMFHIHNALSHRGAP 119

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LL+TAR  P  WG  LPDL SR+  A + ++  PDD  L  V++K   DR++ +  K+  
Sbjct: 120 LLITARLPPSRWGTQLPDLASRMAQAGLARLEAPDDALLMAVMMKRAFDRKLPLSPKILT 179

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALS 225
           +   R+ERS   A+  + ++D LALS
Sbjct: 180 FAAPRLERSFAAADAFIARVDALALS 205


>gi|260575896|ref|ZP_05843891.1| conserved hypothetical protein [Rhodobacter sp. SW2]
 gi|259021822|gb|EEW25123.1| conserved hypothetical protein [Rhodobacter sp. SW2]
          Length = 230

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 119/215 (55%), Gaps = 3/215 (1%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
           + F  P    + R D  V  A   A+  +D W  WP   ++LVGP+G+GK+ LA+IW+  
Sbjct: 1   MAFDLPTSEALGRADFCVSPANALALAALDGWRDWPGGKMLLVGPAGAGKTHLAHIWASD 60

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTA 144
           + +   +  A +   +    +  + +ED + +  N   +  LFH+ N   +    LL+TA
Sbjct: 61  AGAGLIAGSALAGADLPALAQTALCVEDAESVAGNPAAEAALFHLHNLAAERGMPLLLTA 120

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
            T P  WG+ LPDL SR++A  + ++  PDD  L  ++VK+FADRQI +   L  Y+V R
Sbjct: 121 ATPPRDWGLGLPDLASRMQATPLTRLDAPDDALLSALLVKLFADRQISVPPNLIPYLVSR 180

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           M+RS   A  LV  +D  AL+ G  ITR LAA+V+
Sbjct: 181 MDRSFAAARALVAALDARALALGRPITRQLAADVI 215


>gi|56696015|ref|YP_166369.1| hypothetical protein SPO1118 [Ruegeria pomeroyi DSS-3]
 gi|56677752|gb|AAV94418.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 225

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 114/216 (52%), Gaps = 4/216 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    + R+D  V  A   AV +I S   WP   ++L GP+G+GK+ LA++W+ 
Sbjct: 4   QLSFDLPAMTALGREDFFVSPANALAVAMI-SARIWPGGKLVLTGPAGAGKTHLAHVWAS 62

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143
           ++ +      A     I      PV +ED+ LL  +D +   LFH+ N        LL+T
Sbjct: 63  ETGARIIEATALVEADIPELAAGPVAVEDVPLLAGDDARQALLFHLHNLTLANGHPLLLT 122

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
            R  P  W + LPDL SR+ AA  V +  PDD  L  V+ K+F DRQ+    ++ +Y+V+
Sbjct: 123 GRAAPGFWDLSLPDLQSRVDAAQHVALDPPDDALLGAVLAKLFVDRQLSPGPEVISYLVK 182

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            M+RS   A + V  +D +AL     ITR+LA  +L
Sbjct: 183 HMDRSFEAAARTVAALDRIALDEKRDITRALAVRLL 218


>gi|170743265|ref|YP_001771920.1| chromosomal replication initiator DnaA [Methylobacterium sp. 4-46]
 gi|168197539|gb|ACA19486.1| Chromosomal replication initiator DnaA [Methylobacterium sp. 4-46]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 111/208 (53%), Gaps = 2/208 (0%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P       +D LV  + E A   I++WP WP  V++L GP GSGKS LA IW++
Sbjct: 7   QLALDLPLDPRFGPEDFLVGPSNEDAYARIEAWPDWPDPVLVLTGPPGSGKSHLAAIWAE 66

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFND-TQLFHIINSIHQYDSSLLMTA 144
           ++ +   +  A +  ++     +P L+ ED D     D   LFH++N   +    L++T 
Sbjct: 67  RAGARIVAAGAVTRAALPDLAGEPALVVEDADRPSGRDEPALFHLLNLARERGRGLVVTG 126

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
                 WG   PDL SRL+ A  + ++ PD+  L  V+VK+F DRQ+ +D  +   +  R
Sbjct: 127 SGPVEGWGFATPDLRSRLRLAPTLGLAPPDEALLRAVLVKLFVDRQLVVDTSVVDALALR 186

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITR 232
           ++RSL  A  +V  +D+  LSRG  ITR
Sbjct: 187 IDRSLGRARDVVAALDHEGLSRGRRITR 214


>gi|254419375|ref|ZP_05033099.1| chromosomal replication initiator protein DnaA [Brevundimonas sp.
           BAL3]
 gi|196185552|gb|EDX80528.1| chromosomal replication initiator protein DnaA [Brevundimonas sp.
           BAL3]
          Length = 224

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 6/195 (3%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           +AVR++  WP     V+ L GP+GSGKS LA  W+++  +   + +  +L   L    +P
Sbjct: 30  EAVRVLSRWPDGAGSVLALYGPAGSGKSRLAADWAERVGAVPLNGVEAALVDPLELEGRP 89

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           VLL+     D +D  LFH+IN  H    +LL+ +R  P +W V LPDL SRL A   V +
Sbjct: 90  VLLDRAR--DADDESLFHLINLAHTGGGALLLVSRAAPRNWSVALPDLRSRLDAVRTVAV 147

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             PDD  L  ++   FA+R I    ++ AY+V+R++RS   A   V+++D  AL R   +
Sbjct: 148 EAPDDRVLSAILRARFAERSIAPTDEVIAYLVRRLDRSADTAATAVERLD--ALHR--PV 203

Query: 231 TRSLAAEVLKETQQC 245
           TR+LA +VL E    
Sbjct: 204 TRALARQVLDEMSAA 218


>gi|260430971|ref|ZP_05784942.1| chromosomal replication initiator, DnaA [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414799|gb|EEX08058.1| chromosomal replication initiator, DnaA [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 117/218 (53%), Gaps = 4/218 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    + R+D  V  +   AV +I S  SWP   ++L GP+GSGK+ LA++W+ 
Sbjct: 4   QLSFDLPAKTALGREDFFVSPSNALAVAMI-SANSWPGNKLVLSGPAGSGKTHLAHVWAA 62

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143
           ++            D + +  R P+ +ED+ ++  +  Q   LFH+ N +     +LL+T
Sbjct: 63  ETGGQIIQATNLRHDDVPLLARAPIAVEDVPMIAGDIEQQKVLFHLHNLVLAEGHALLLT 122

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
            R  P  W + L DL SR++ A  V +  PDD  L  V+ K+F DRQ+     + AY+V+
Sbjct: 123 GRLAPKYWELPLADLQSRVEGAHHVALDPPDDALLCAVLAKLFVDRQLNPGPDVIAYLVK 182

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            M+R    A  +V ++D++AL     ITR+LA  VL +
Sbjct: 183 HMDRRFETAADVVAQLDHVALMEKREITRTLAIRVLNK 220


>gi|163792847|ref|ZP_02186823.1| hypothetical protein BAL199_23699 [alpha proteobacterium BAL199]
 gi|159181493|gb|EDP66005.1| hypothetical protein BAL199_23699 [alpha proteobacterium BAL199]
          Length = 229

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 114/225 (50%), Gaps = 17/225 (7%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLANIWS 85
           L   + R LG  R D LV +    A   ID WP WP+  R + +VGP+  GK+ L  +W 
Sbjct: 8   LDLGYRRALG--RSDYLVTACNADAAAWIDRWPDWPAPLRGLAIVGPAECGKTHLGAVWR 65

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI------DLLDFNDTQ-LFHIINSIHQYDS 138
             S +   +    ++D +      P  L D       DL      Q L H+ N++ +   
Sbjct: 66  RASGAVAVNAADLTVDGL------PDALGDATHAAVDDLTGIRAPQALLHLYNTVAERGG 119

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           S+L+ +RT P      LPDL SRL    +  +  PD+  L  V+ K FADRQ+ + + + 
Sbjct: 120 SVLILSRTAPARCDFGLPDLASRLATLPIAMVGPPDEALLAGVLGKHFADRQVAVREDVV 179

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           AY+V RMERS   A +LVD++D LAL+ G  + R+LA   L + +
Sbjct: 180 AYLVARMERSFSAAYRLVDRLDRLALAEGRKVDRALAKRALADDE 224


>gi|83945464|ref|ZP_00957811.1| hypothetical protein OA2633_01079 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851040|gb|EAP88898.1| hypothetical protein OA2633_01079 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 222

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 105/182 (57%), Gaps = 2/182 (1%)

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           WP W    ++LVGP+GSGK+ L+++W+ ++R+TR    + S     +     VL+ED D 
Sbjct: 37  WPRWRQGHLLLVGPAGSGKTHLSHMWTARTRATRLDPASLSNGLKTVGRGAAVLVEDCDR 96

Query: 119 LDFNDTQLFHIIN-SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
              ++  LFH++N +      ++LMTA   P  W V LPDL SRL A     +  PDD  
Sbjct: 97  -GVDEDALFHLLNRAAGDAGVTVLMTAGKAPAEWPVRLPDLASRLIATETAVLHEPDDAL 155

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
           L +V+ K+F D++  +   +  Y++ RMERS+ +A +L   +D  AL+R   +TR+LA E
Sbjct: 156 LRQVMEKLFRDKRTPLSPGVLEYLLDRMERSVDYARRLTAWLDREALARKGPVTRTLARE 215

Query: 238 VL 239
            L
Sbjct: 216 AL 217


>gi|254440942|ref|ZP_05054435.1| chromosomal replication initiator protein DnaA [Octadecabacter
           antarcticus 307]
 gi|198251020|gb|EDY75335.1| chromosomal replication initiator protein DnaA [Octadecabacter
           antarcticus 307]
          Length = 223

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 9/218 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL F  P  + +   D  V  A   A  +I +  +WP   + L+GP+GSGK+ LA ++S
Sbjct: 3   RQLAFDLPTNVRLGAVDFFVSDANALAYAMIQTSQTWPGNKLALIGPAGSGKTHLARVFS 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLL 141
            +S +     I  + D I  DT  P   V+LED D L     + LFH  N++ +    LL
Sbjct: 63  AQSGAM----IINAKD-IRADTGLPSGNVVLEDGDALPPEGEEWLFHAYNALARDGFMLL 117

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T+R     W + LPDL SRL A T +KI  PDD  L  V++K FADRQ+    +  A++
Sbjct: 118 LTSRLPAARWDIALPDLASRLSAITSIKIENPDDPLLTAVLLKHFADRQLAPTPEAVAFL 177

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           ++R+ RSL    ++VD +D  AL++   +TR     VL
Sbjct: 178 IKRLPRSLDAVRRIVDTLDRKALAQSKPLTRPFVRAVL 215


>gi|221640240|ref|YP_002526502.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           KD131]
 gi|221161021|gb|ACM02001.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           KD131]
          Length = 231

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 4/194 (2%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    +SR+D  +  A   A+  +D W  WP   ++LVGP GSGK+ LA+IW+ 
Sbjct: 4   QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63

Query: 87  KSRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142
           ++ +      A    D   +     V +ED + L  +   +  LFH+ N + +   +LL+
Sbjct: 64  QAEARLIPAEALARADLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALLI 123

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TA   P  WG+ L DL SR++AA+V ++  PDD  L  ++VK+F DRQI +   L  ++V
Sbjct: 124 TAAGPPRDWGLGLADLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWLV 183

Query: 203 QRMERSLVFAEKLV 216
            RM+RS   A  LV
Sbjct: 184 ARMDRSCEAARALV 197


>gi|114704852|ref|ZP_01437760.1| hypothetical protein FP2506_07946 [Fulvimarina pelagi HTCC2506]
 gi|114539637|gb|EAU42757.1| hypothetical protein FP2506_07946 [Fulvimarina pelagi HTCC2506]
          Length = 223

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 4/214 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P    + RDDL+V  +   A   ID+WP W   V+++VGP GSGK+ LA IW++
Sbjct: 4   QLPLELPSIEQLGRDDLIVSHSNTLAAEAIDAWPDWQHNVLLIVGPEGSGKTHLARIWAE 63

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
            + +T        +  +    R  ++++DID  D  D+ LF  IN+       +L T+R 
Sbjct: 64  AADATILG--LGEIGPLSGGFR--LVIDDIDRPDVADSDLFAPINAARLGQGWVLATSRV 119

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P      LPDL SRL AA    +  PDD   E ++ K F+D Q+ +D     Y+  R+E
Sbjct: 120 SPKMMAGRLPDLVSRLSAAARADLDPPDDVLFEGILAKRFSDHQLVVDPPTLTYLATRIE 179

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R+   A  +V+ ++  AL+    IT+     VL+
Sbjct: 180 RTGSAARAIVEDINRQALAEKSRITKPFVRRVLE 213


>gi|84515333|ref|ZP_01002695.1| hypothetical protein SKA53_01706 [Loktanella vestfoldensis SKA53]
 gi|84510616|gb|EAQ07071.1| hypothetical protein SKA53_01706 [Loktanella vestfoldensis SKA53]
          Length = 220

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 122/215 (56%), Gaps = 3/215 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL F +P  + +  DD  V +A   A  ++     WP   +++ GP+G GKS LA I++
Sbjct: 4   RQLSFDWPNGVALGPDDFFVSTANATAFGMVTDPARWPLCKLVITGPAGCGKSHLARIFA 63

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLMTA 144
               +   +  A  L +        +++ED+D L     + +FH+ N +H     LL+TA
Sbjct: 64  AGQPTQIIA--AADLTADFRPKAAALVVEDMDTLPSAAQEAMFHLHNHLHNNGGLLLLTA 121

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R  P  W + LPDL SR++ + VV+++ PDD  L+ V++K+FADRQ+     LAAY+  R
Sbjct: 122 RQTPRHWPITLPDLASRMQGSAVVQVADPDDALLQAVMMKLFADRQLLPPPDLAAYLAPR 181

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +ERS   A  +V ++D++AL+ G  I++ LAA +L
Sbjct: 182 IERSFAAAAAIVAELDSMALATGHKISQRLAARLL 216


>gi|46202132|ref|ZP_00208394.1| COG0593: ATPase involved in DNA replication initiation
           [Magnetospirillum magnetotacticum MS-1]
          Length = 231

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 116/218 (53%), Gaps = 2/218 (0%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL  +F     ++ +D LV     +A   + +   WP    IL GP+GSGK+ LA+++
Sbjct: 3   EAQLPLAFGHVPSLAAEDFLVAPCNAEAHAWVGAPQRWPGPASILCGPAGSGKTHLAHLF 62

Query: 85  SDKSRSTRFSNIAKSLDS--ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
           +             + DS   L+++   +++ED D    ++  LFH+IN   +    LL+
Sbjct: 63  ARDGGGILVPAAQVTEDSSRPLLESVPVLVVEDCDRASLDEVALFHLINQSRELGRFLLL 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TAR+ P  W V LPDL SRL A  V  I  PDD  L  ++VK+F DRQ+ I + +  ++V
Sbjct: 123 TARSAPAHWAVRLPDLRSRLLAMPVASILAPDDALLAALLVKLFDDRQLRIGEDVVHFLV 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            RMERS   A  LVD++D  A +    +T  LA  +L+
Sbjct: 183 GRMERSFAAAASLVDRLDRAAWAGRRAVTVPLARRILE 220


>gi|255261822|ref|ZP_05341164.1| chromosomal replication initiator, DnaA [Thalassiobium sp. R2A62]
 gi|255104157|gb|EET46831.1| chromosomal replication initiator, DnaA [Thalassiobium sp. R2A62]
          Length = 224

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 7/220 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL F  P  + +  DD  V SA +   R I   P+WP   + L+GP  SGKS LA +++
Sbjct: 3   EQLSFDLPERIAMGADDFYVSSANDVPYRAITGSPNWPDGKLALIGPKSSGKSHLARMFA 62

Query: 86  DKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLL 141
             + +   +  A+ L++   L D    + +ED++ L     Q  LFH+ N +      LL
Sbjct: 63  HDTGALILA--ARDLEAATNLPDAAH-IAIEDVEHLGNPAAQEYLFHLHNHLKNTGGRLL 119

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T+      W + LPDL SR++A T V I  PDD  L  VI K+FADRQ+     + AY+
Sbjct: 120 LTSDRRAQDWPITLPDLASRMQATTSVYIEDPDDALLFAVISKLFADRQLSPAPTVTAYL 179

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             R++RS   A+++V  MD  AL++   + R LA +VL +
Sbjct: 180 AARIDRSYNAAQQIVAAMDAAALAQARELNRGLAGDVLAQ 219


>gi|254451021|ref|ZP_05064458.1| chromosomal replication initiator, DnaA [Octadecabacter antarcticus
           238]
 gi|198265427|gb|EDY89697.1| chromosomal replication initiator, DnaA [Octadecabacter antarcticus
           238]
          Length = 230

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 115/215 (53%), Gaps = 3/215 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            Q+ F  P  + +   D  V  A   A  L+ +  +W +  + ++GP+GSGK+ LA +++
Sbjct: 10  RQMAFDLPTNVRLGAADFFVSDANTLAYVLMQTPQTWSNNNLAIIGPAGSGKTHLARVFA 69

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLMTA 144
            +S +T  +      D+ L ++   V+LED D L  +  + LFH+ N++ +    LL+T+
Sbjct: 70  AQSGATIINAKDVRADTDLPNSN--VVLEDGDALRTDGEEWLFHVYNALSRAGFFLLLTS 127

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R  P  W + LPDL SRL   T V I  PDD  L  V++K FADRQ+       A++++ 
Sbjct: 128 RLPPARWDIALPDLASRLSTITSVTIDDPDDPLLTAVLLKHFADRQLAPTPNAVAFLMKH 187

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + RS     ++VD +D  AL++   +TR     VL
Sbjct: 188 LPRSFNAVRRIVDTLDREALAQSKPLTRPFVRAVL 222


>gi|148284485|ref|YP_001248575.1| hypothetical protein OTBS_0856 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739924|emb|CAM79922.1| conserved hypothetical protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 216

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 17/223 (7%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS-WP----SRVVILVGPSGSGKSCLA 81
           Q   +FP       +D +V S+   A +LI +WPS W     SR +++ GP+ SGK+ LA
Sbjct: 2   QHTINFPNNSKFLEEDYIVASSNFDAYQLIKNWPSMWGITPYSRSLLVCGPASSGKTYLA 61

Query: 82  NIWSDKSRSTRFSN--IAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137
           NIW       R++N     S D+I     T+   ++EDID   ++D +L HI N +H+ +
Sbjct: 62  NIWQ------RYANAVFMSSSDNIDQFYQTKPSFIIEDIDKTHWSDKKLLHIFNILHENN 115

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             L++T    P ++   LPDL SRL A   +K+  PDD+ ++ V++K F++R + +  ++
Sbjct: 116 KFLMLTCSMHPTNF--ILPDLTSRLSAVLTIKLHRPDDEMMKIVLMKAFSERSLKVSNEI 173

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             Y+  R+ R      + V  +D  +L     IT  L  E+LK
Sbjct: 174 INYLSSRLTREFSIIHETVKLIDKYSLEHKRNITIPLLKELLK 216


>gi|114569799|ref|YP_756479.1| regulatory inactivation of DnaA Hda protein [Maricaulis maris
           MCS10]
 gi|114340261|gb|ABI65541.1| regulatory inactivation of DnaA Hda protein [Maricaulis maris
           MCS10]
          Length = 230

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 6/181 (3%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLL 119
           WP  V+ L+GP G+GKS LA IW+ + ++     S +   L ++  D    +++ED+D  
Sbjct: 43  WPRNVMALIGPEGAGKSHLAAIWAGRQQALVLPASTLGDRLAALEPDCA--MVVEDVDQ- 99

Query: 120 DFNDTQLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
             +D  LFH+ N   +    +LL+TART P  W V +PDL SRL+A   V +   DD  L
Sbjct: 100 GVDDDALFHLFNRAAEGAIPALLLTARTRPAHWTVSVPDLVSRLRALVHVDLHEADDVLL 159

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
            +V+ K  ADR   +   +  Y++ RMERS+     L ++MD LAL +   ITR++A E+
Sbjct: 160 TRVLEKQLADRGAPVRPGVIDYLLPRMERSVAAVRILAERMDKLALVKKTPITRAIAREI 219

Query: 239 L 239
           L
Sbjct: 220 L 220


>gi|310815333|ref|YP_003963297.1| DnaA-like protein [Ketogulonicigenium vulgare Y25]
 gi|308754068|gb|ADO41997.1| DnaA-like protein [Ketogulonicigenium vulgare Y25]
          Length = 223

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 2/215 (0%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F  P    ++  D +V  A E A  ++   P WP   + L+G  G+GK+ LA +W 
Sbjct: 3   QQLSFDLPIRPSLAAGDYVVSEANEAAYVMLCEEP-WPINKLALIGAPGAGKTHLARVWQ 61

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTA 144
            +     +          L      +++EDI+ L    +  +FH+ N +      LL+T+
Sbjct: 62  AQEGGHVWQAGGLDPQGGLPPDGANLVIEDIEHLPRRAEEYVFHVHNHLMNTGGHLLVTS 121

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P  W + LPDL SR++A  VV I  PD+  +  V+ K+FADRQ+     +  Y+V R
Sbjct: 122 DRGPGDWAIRLPDLASRMQAMAVVPIGDPDEWLMTAVLAKLFADRQLVPTPDVLPYLVSR 181

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + RSL  A ++V +MD  AL++   + R +A +VL
Sbjct: 182 LPRSLAVAAEVVAQMDAAALAQRRPLNRPMARQVL 216


>gi|302383321|ref|YP_003819144.1| DnaA-related protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302193949|gb|ADL01521.1| DnaA-related protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 232

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 6/191 (3%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           AV  + +WP+   RV+ L GP+G GKS LA+ W+++  +   +    +L   L    +PV
Sbjct: 35  AVDALAAWPNAAGRVMALCGPAGCGKSHLASAWAERVGAIPLNGAEAALTDPLELEGRPV 94

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LL+     D +D  LFH+IN       +LLM +R  P  W V +PDL SRL A  VV + 
Sbjct: 95  LLDIAQ--DADDETLFHLINLAQHDGGALLMVSRPSPRRWAVQVPDLRSRLDAVRVVAME 152

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            PDD  +  ++   FA+R I     +  Y+V R++RS   A  +V ++D+        IT
Sbjct: 153 APDDAVMSAILAARFAERSITPGDGVIDYLVLRIDRSAEAAAGIVARLDD----EHRPIT 208

Query: 232 RSLAAEVLKET 242
           R+LA +VL+ +
Sbjct: 209 RALARQVLEAS 219


>gi|189184534|ref|YP_001938319.1| hypothetical protein OTT_1627 [Orientia tsutsugamushi str. Ikeda]
 gi|189181305|dbj|BAG41085.1| DnaA homologue Had protein [Orientia tsutsugamushi str. Ikeda]
          Length = 216

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 17/223 (7%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS-WP----SRVVILVGPSGSGKSCLA 81
           Q   +FP       +D +V S+   A +LI +WPS W     S+ +++ GP  SGK+ LA
Sbjct: 2   QHTINFPNNSKYLEEDYIVTSSNFDAYQLIKNWPSMWGITPYSKSLLVCGPPSSGKTYLA 61

Query: 82  NIWSDKSRSTRFSN--IAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137
           NIW       R++N     S D+I     T+   ++EDID   + D +L HI N +H+ +
Sbjct: 62  NIWQ------RYANAVFMSSSDNIDQFYQTKPSFIIEDIDKTHWTDKKLLHIFNILHENN 115

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             L++T    P ++   LPDL SRL A   +K+  PDD+ ++ V++K F++R + +  ++
Sbjct: 116 KFLMLTCSMHPTNF--ILPDLASRLSAVLTIKLHRPDDEMMKIVLMKAFSERSLKVSTEI 173

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             Y+  R+ R        V  +D  +L     IT  L  E+LK
Sbjct: 174 INYLSSRLTREFSIIHDTVKLIDKYSLEHKRNITIPLLKELLK 216


>gi|83311942|ref|YP_422206.1| DNA replication initiation ATPase [Magnetospirillum magneticum
           AMB-1]
 gi|82946783|dbj|BAE51647.1| ATPase involved in DNA replication initiation [Magnetospirillum
           magneticum AMB-1]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 118/218 (54%), Gaps = 2/218 (0%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL  +F     ++ DD LV     +A   + +   WP    +L GP+ SGK+ LA+++
Sbjct: 3   EAQLPLAFGHVPSLAADDFLVAPCNAEAHAWVGAPGRWPGPASVLCGPAQSGKTHLAHLF 62

Query: 85  S--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
           +     R    + + +     L+++   +++ED D    ++  LFH+IN   +    LL+
Sbjct: 63  ARDGGGRLVSAAEVTEGSSRPLLESVPVLVVEDCDRGPLDEVGLFHLINQGRELGRLLLL 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TAR  P +W V LPDL SRL A  V  I  PDD  L  ++VK+F DRQ+ I + +  +++
Sbjct: 123 TARLPPATWAVRLPDLRSRLLAMPVAAIGAPDDALLAALLVKLFDDRQLRIGEDVVHFLI 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            RMERS     ++V+++DN AL+    +T  LA  +L+
Sbjct: 183 GRMERSFAACARMVERLDNAALASRRAVTVPLARRILE 220


>gi|167646514|ref|YP_001684177.1| DnaA-like protein [Caulobacter sp. K31]
 gi|167348944|gb|ABZ71679.1| DnaA-related protein [Caulobacter sp. K31]
          Length = 233

 Score =  108 bits (269), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 16/226 (7%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           ++ +L  + P C    R+         QA+  +D+WP+WP   + LVGP+G+GK+ LA  
Sbjct: 3   RQFRLPLTTPPCW--DRESFASSPTNAQALAGLDAWPAWPDGRLALVGPAGTGKTHLARD 60

Query: 84  WSDKSRSTRFSNIAKSLDSILID----TRKPVLLEDID------LLDFNDTQLFHIINSI 133
           W+ ++ +      A +L+   +D      +P+L+ED D      L+D  D  LFH+IN  
Sbjct: 61  WARRAGAVVIE--AATLNHAPLDLASLRGRPLLVEDADRRADGDLVD--DETLFHLINMA 116

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
                SLL+T R  PV+W   +PDL SRL A TV +I  PDD  LE V+ + F    I  
Sbjct: 117 GVDGGSLLLTGRLAPVAWEAAVPDLRSRLNALTVARIVEPDDIVLEAVLRRGFEAAGIRP 176

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              L  Y++ R+ RS   A   V  +D  A ++G  + ++LA  VL
Sbjct: 177 TADLYPYLMARLPRSAPAALAAVAALDEAAAAQGREVNKALALAVL 222


>gi|294084193|ref|YP_003550951.1| hypothetical protein SAR116_0624 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663766|gb|ADE38867.1| hypothetical protein SAR116_0624 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 228

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 114/215 (53%), Gaps = 11/215 (5%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSRVVIL--VGPSGSGKSCLANIWSDKSRSTRFSNIA 97
           RD+  + ++ + A   ID WP WP ++  L  VG  GSGKS LA +W +++ S   S   
Sbjct: 16  RDNFFISASNQLAADWIDRWPDWPGQMQALNIVGEPGSGKSHLAAVWQEQTGSVSLSKAD 75

Query: 98  KSLDSILIDTRKPV---LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVS---W 151
             +   L++        +L+++   + ++  LFH +N+I     SLL+ + + P++   W
Sbjct: 76  ADMVHRLMEKNAEAPCFILDNLSAENSDEEALFHFLNAIKSVQGSLLILS-SMPIALMNW 134

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
              L DL SRLKA  V +I LPDD  L  ++ K FA+RQ+     +  YIV RM+RS   
Sbjct: 135 K--LADLMSRLKAINVAQIELPDDMLLFALLEKYFAERQLVAPHNMLHYIVSRMDRSFSA 192

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             ++   +D  AL+    ++ +LA +VL +  + D
Sbjct: 193 VHQIGAALDREALASKKSLSVNLARDVLHKQLEID 227


>gi|330993500|ref|ZP_08317435.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter
           sp. SXCC-1]
 gi|329759530|gb|EGG76039.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter
           sp. SXCC-1]
          Length = 255

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 11/224 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVR--LIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           QL   F      +  D  V SA   A R  L+   P WP R + L GP+G+GK+ + +IW
Sbjct: 20  QLVLPFAHTPRFAASDF-VFSASNAAARSWLLGPTP-WPERRLALWGPAGTGKTHMLDIW 77

Query: 85  SDKSRSTRFSNIAKSLDSILI-----DTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYD 137
           + +  +      + +   +         R+P +   +D  D   ++  L H++NS  +  
Sbjct: 78  ARRHEALLLHGGSLTHAHVAALFAARGGRRPPMAMALDGADMCGDEHALLHLLNSAREQG 137

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            ++L+ ART P  W V LPDL SRL+A   V +  P D  L  +++++ A+RQI + + +
Sbjct: 138 MAVLLGARTPPARWPVILPDLASRLRATMAVAVGQPGDGLLRVLLLRLLAERQIVVAQPV 197

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             ++++R+ R+    +  V ++D+ AL+ G  +TR+LAA VL +
Sbjct: 198 VEWLLRRLPRTARAMQAAVRRLDHAALATGRPVTRALAASVLSD 241


>gi|103487240|ref|YP_616801.1| ATPase involved in DNA replication initiation [Sphingopyxis
           alaskensis RB2256]
 gi|98977317|gb|ABF53468.1| ATPase involved in DNA replication initiation [Sphingopyxis
           alaskensis RB2256]
          Length = 220

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 22/203 (10%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96
           G +   L++ ++   AVR +    +WP R  +L GP GSG+S +  ++            
Sbjct: 20  GANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGRSLMGRLF------------ 67

Query: 97  AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
           A+     +ID    V           + +LFH  N+     S LL+ A   P  W V LP
Sbjct: 68  ARDTGGRVIDGHTSV----------GEEELFHAWNAAQASGSPLLVIADAPPAEWNVALP 117

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
           DL SRL A  V+ I  PDD     +I  +FA R + +   +A+YIV RMERS     ++V
Sbjct: 118 DLRSRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVASYIVPRMERSYAMIHRIV 177

Query: 217 DKMDNLALSRGMGITRSLAAEVL 239
             +D  +L +G  +   LA E L
Sbjct: 178 AALDAASLEQGRRLGVRLARETL 200


>gi|162147795|ref|YP_001602256.1| DNA replication [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542417|ref|YP_002274646.1| Chromosomal replication initiator DnaA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786372|emb|CAP55954.1| putative DNA replication [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530094|gb|ACI50031.1| Chromosomal replication initiator DnaA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 255

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74
            Q    P++   QL   F      +R D +   +   A   +   P+WP   + L G +G
Sbjct: 8   NQDETAPRDSFGQLVLPFAHRTRHARADFVAAPSNGMARAWLLGAPAWPEHRLALWGAAG 67

Query: 75  SGKSCLANIWSDKSRSTRFSN---IAKSLDSILIDTR---KPVLLEDIDLLDFNDTQLFH 128
           +GK+ L +IW+ +  +   +       +L  +  D     + V ++D D ++ +   L H
Sbjct: 68  AGKTHLLDIWAQERGAVLLTGADLTQATLGRLFDDAPDMLRAVAVDDADRVE-DQRALLH 126

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           ++N+  ++  ++++ AR  P  W V LPDL SRL+A   +++  P+D  L  ++++  AD
Sbjct: 127 LLNAAREHRVAVVLAARLSPARWPVVLPDLASRLRATMAIELRQPEDTLLRILLLRHLAD 186

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           RQI + + +  ++++R+ R+     +   ++D+  L+ G  +TR+LA  VL +
Sbjct: 187 RQIVVSQPVTEWLLRRLPRTASAIREAAIRLDHAGLAAGRRVTRALALSVLHD 239


>gi|329850486|ref|ZP_08265331.1| bacterial dnaA family protein [Asticcacaulis biprosthecum C19]
 gi|328840801|gb|EGF90372.1| bacterial dnaA family protein [Asticcacaulis biprosthecum C19]
          Length = 223

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 114/212 (53%), Gaps = 19/212 (8%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS---- 94
           SRD    ++A++  + ++    +W S  +IL GPSG+GKS LA+I++ ++ +   +    
Sbjct: 16  SRDSFATNAALQAVLDVLLVPQAWISPHLILQGPSGTGKSHLAHIFAAETGAHLLTADDT 75

Query: 95  ---NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
              ++A    S ++D          D    ++  LFH+ N + +    L++T +  P+ W
Sbjct: 76  YQLDLAALTGSYVVD----------DAETASEEALFHLSNYVQKSGQHLVLTTKIQPIIW 125

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
              LPDL SRL+A  ++ +  PD+D L  V+ K+FA R I       AY+  R+ERS+  
Sbjct: 126 QTALPDLGSRLRAMRLMVLPEPDEDLLAAVLKKLFAQRFIQPSDDTLAYLSTRVERSVPA 185

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           A+K+V ++++ A   G    ++L  + L++++
Sbjct: 186 AQKIVTELEHHA--NGRAFNKTLIRDFLEQSE 215


>gi|16125955|ref|NP_420519.1| DnaA-like protein [Caulobacter crescentus CB15]
 gi|221234720|ref|YP_002517156.1| DnaA-like protein [Caulobacter crescentus NA1000]
 gi|13423125|gb|AAK23687.1| DnaA-related protein [Caulobacter crescentus CB15]
 gi|220963892|gb|ACL95248.1| chromosome replication regulator protein HdaA [Caulobacter
           crescentus NA1000]
          Length = 230

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 107/209 (51%), Gaps = 8/209 (3%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI-- 96
            R+D  V  +  +AV  +D+WP W    ++LVGP+G GKS LA  W+  + +        
Sbjct: 16  GREDFAVSPSNGEAVARLDAWPDWAEGRLVLVGPAGCGKSHLARAWAAAAGAVVVEAANP 75

Query: 97  -AKSLDSILIDTRKPVLLEDIDL----LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
            A S+D   +  R  VL+ED D        +D  LFHI+N       ++L+T RT P++W
Sbjct: 76  DAASVDLSALRGRA-VLVEDADRRAQGAAVSDEALFHILNMAGVDGGTVLLTGRTAPLTW 134

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
              + DL SRL A +V +I+ PDD  LE V+ + FA      +  L  Y++ R+ RS   
Sbjct: 135 SAEVADLRSRLNALSVAEIAEPDDAVLEAVLRRAFAAAWWKPEPDLYPYLLARLPRSAAE 194

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           A+     +   A      +T++LA EVL+
Sbjct: 195 AQAAAALLAEAAADGRRELTKALAREVLE 223


>gi|315500000|ref|YP_004088803.1| chromosomal replication initiator dnaa [Asticcacaulis excentricus
           CB 48]
 gi|315418012|gb|ADU14652.1| Chromosomal replication initiator DnaA [Asticcacaulis excentricus
           CB 48]
          Length = 221

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 99/183 (54%), Gaps = 10/183 (5%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           W +  ++L GP+GSGK+  ++++++   +   +  A      + DT    ++++ D   F
Sbjct: 39  WLNPHLVLTGPAGSGKTHASHVFAETHGAHWLNPGAP-----VPDTATLFVVDEADT--F 91

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
           +   LFH+ N     D  LL+ +R  P  W + +PD  SRLKA  V+ +  PDD  L+ V
Sbjct: 92  DQEVLFHLYNRTAS-DGRLLLLSRQHPAQWRIRVPDFESRLKAMRVIDMPEPDDSLLKSV 150

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + K+F  R I     +  Y+ +RMERS+  A+K+V  ++  A + G   TRSLA + ++ 
Sbjct: 151 LKKLFEARVITPSDDVLEYLSRRMERSVAHAQKIVTGLE--AYANGRAFTRSLARQFIET 208

Query: 242 TQQ 244
           ++ 
Sbjct: 209 SEN 211


>gi|258541973|ref|YP_003187406.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256633051|dbj|BAH99026.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636108|dbj|BAI02077.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639163|dbj|BAI05125.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642217|dbj|BAI08172.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645272|dbj|BAI11220.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648327|dbj|BAI14268.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651380|dbj|BAI17314.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654371|dbj|BAI20298.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 255

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 20/238 (8%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---DSWPSWPSRVVILVGP 72
           QK     N+ EQ+   F       R D +   +   A   +   ++   WP   + L G 
Sbjct: 18  QKRQNEANEAEQIALPFAHRPRFGRSDFVAAPSNAAARAWVLDAEAAARWPEGRMALWGE 77

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-ED-------IDLLDF--N 122
           SG+GK+ L +IW+      R+   A  ++   ++T +  +L ED       +D  D   N
Sbjct: 78  SGTGKTHLLSIWAG-----RYG--APIMEGSRLNTHEAAMLFEDGGFRAAALDNADKVPN 130

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
           +  L H+IN   +   +LLM AR  P  W V LPDL SRL+A   V +   ++  L +++
Sbjct: 131 ERDLLHLINLARERRVALLMAARRPPARWPVVLPDLASRLRATASVPLGPAEEGLLHRLL 190

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +++ A+RQI +  ++  ++++R+ R        V  +D  AL  G  ITR+LAA VL+
Sbjct: 191 LRLLAERQIVVGAQVTEWLLRRLPRRASAVRDCVAMLDQAALESGGRITRALAANVLE 248


>gi|71083424|ref|YP_266143.1| DNA replication initiation ATPase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062537|gb|AAZ21540.1| probable ATPase involved in DNA replication initiation [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 220

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 8/186 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL   F        DD  V  +   A  +I+ WP W    + + G   SGKS L NI+  
Sbjct: 6   QLLLDFNYEQNFKDDDFYVGKSNFYAFEMINKWPKWEKNFLNINGEKFSGKSHLVNIFLK 65

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
           K    R      SL+   I + KP   ++LED++L + N+  ++ + N I Q D+  L+ 
Sbjct: 66  KFNGIRID--VNSLNDENIKSIKPYQNIVLEDLNL-NINEKLIYSLFNIIDQ-DNKFLIV 121

Query: 144 ARTFPVS-WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
               P+S     L DL SR K      I  PDD+ +  +I+K  +DRQI +DKKL  +I+
Sbjct: 122 TSMKPISEINFKLEDLRSRTKNCLFANIQNPDDELMFALILKNLSDRQITLDKKLINFII 181

Query: 203 QRMERS 208
           +R+ERS
Sbjct: 182 KRIERS 187


>gi|91762153|ref|ZP_01264118.1| probable ATPase involved in DNA replication initiation [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717955|gb|EAS84605.1| probable ATPase involved in DNA replication initiation [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 224

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 8/186 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL   F        DD  V  +   A  +I+ WP W    + + G   SGKS L NI+  
Sbjct: 10  QLLLDFNYEQNFKDDDFYVGKSNFYAFEMINKWPKWEKNFLNINGEKFSGKSHLVNIFLK 69

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
           K    R      SL+   I + KP   ++LED++L + N+  ++ + N I Q D+  L+ 
Sbjct: 70  KFNGIRID--VNSLNDENIKSIKPYQNIVLEDLNL-NINEKLIYSLFNIIDQ-DNKFLIV 125

Query: 144 ARTFPVS-WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
               P+S     L DL SR K      I  PDD+ +  +I+K  +DRQI +DKKL  +I+
Sbjct: 126 TSMKPISEINFELEDLRSRTKNCLFANIQNPDDELMFALILKNLSDRQITLDKKLINFII 185

Query: 203 QRMERS 208
           +R+ERS
Sbjct: 186 KRIERS 191


>gi|296282392|ref|ZP_06860390.1| ATPase [Citromicrobium bathyomarinum JL354]
          Length = 196

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 95/209 (45%), Gaps = 33/209 (15%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           P  + I   +L V  A+ +  R       WP R  IL G S SGKS L   W        
Sbjct: 9   PASIVIGSANLAVVEALREPER-------WPFRTAILRGESRSGKSLLGR-W-------- 52

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           F++                L E ID  D   +T LFH  N   +  ++LL+     P  W
Sbjct: 53  FAHAG--------------LGETIDPADAMEETALFHRWNRAQEEGTALLLIPEKAP--W 96

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
            + LPDL SRL AA  ++I  PDDD +  +IV   A R + + +    Y+V RM RS   
Sbjct: 97  EIALPDLRSRLGAALALEIGQPDDDMMRDLIVSHAARRGLMLGEDALTYVVPRMTRSFAA 156

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           AE+ V  +D LAL R    TR+L  + L+
Sbjct: 157 AERFVAVLDRLALERQARPTRNLCRDALE 185


>gi|148552965|ref|YP_001260547.1| DNA replication initiation ATPase [Sphingomonas wittichii RW1]
 gi|148498155|gb|ABQ66409.1| ATPase involved in DNA replication initiation [Sphingomonas
           wittichii RW1]
          Length = 207

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 22/198 (11%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           D +V  A   AVR ++ W  WP    +L GP  SG+S L  I++ K+   RF + A + D
Sbjct: 19  DFIVSEANSTAVRHLEHWSLWPVMATVLTGPRKSGRSLLGRIFAAKT-GGRFVDNADAQD 77

Query: 102 SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                                + +LFH  N+       LL+ A      W + LPDL SR
Sbjct: 78  ---------------------EEKLFHAWNAAQADRKPLLLAADLPSARWRIKLPDLRSR 116

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           L A+  V I  PD   +  ++ K+   R + +  ++  Y+  R+ERS V   ++VD +D 
Sbjct: 117 LLASPHVAIEEPDFPLMLGLVEKLLHVRGLAVRPEVVRYVASRIERSYVGIGRIVDALDE 176

Query: 222 LALSRGMGITRSLAAEVL 239
            AL+R   IT ++A E L
Sbjct: 177 AALARRRPITMAVAREAL 194


>gi|87198923|ref|YP_496180.1| ATPase [Novosphingobium aromaticivorans DSM 12444]
 gi|87134604|gb|ABD25346.1| ATPase [Novosphingobium aromaticivorans DSM 12444]
          Length = 204

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 22/212 (10%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
            + P       + +++  ++  A+  + S  SWP R  IL GP  SGKS LA  W  +S 
Sbjct: 5   IALPLVTARGSETVIMGPSLVPAINALQSADSWPFRTAILAGPPRSGKSLLAR-WFAESG 63

Query: 90  STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
           +    + A SL                      + ++FH  N        LL+     P 
Sbjct: 64  AGDVVDGADSLP---------------------EDEVFHRWNRAQAEGRPLLLVCDRAPG 102

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
            W + LPDL SRL AA +++I  PDD+ +  +I++    R + I   + AY++ R+ERS 
Sbjct: 103 QWKIALPDLASRLGAALLIEIGPPDDELIAGLIMEHSMRRGLVIGDAVLAYLLPRVERSH 162

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              E L++ +D L+L R   +T SL  + + E
Sbjct: 163 AGIELLIETLDRLSLERKSPVTISLVRDAIAE 194


>gi|297717796|gb|ADI50041.1| chromosomal replication initiator protein DnaA [Candidatus
           Odyssella thessalonicensis L13]
          Length = 217

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 23/225 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL    P  L      L++ +A       + +WPSWP   V++VG  GSGK+ +A   S
Sbjct: 2   QQLAIPLPDQLVTDSSTLIIEAANRDVWAWLSAWPSWPLPQVVIVGAKGSGKTHMAKALS 61

Query: 86  DKSRSTRFSNIA---------KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136
            + R++  S  A         +S D ILID  +           + +  LFH+ N   ++
Sbjct: 62  AQQRASLISPSAVIHPPLALIQSADLILIDNYE----------QYGEDWLFHLYNLAKEH 111

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              ++    T P S+   + DL SRL++   ++I  PDD    K+  K   +R +     
Sbjct: 112 HRQVVYFGHTTPASYSFKIHDLASRLRSLPCLEIQEPDDSLFRKLFRKELLNRGMVCGDD 171

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  YI +R +RS      LV  +D L L +     RSL   +LKE
Sbjct: 172 ILEYIYRRFDRSYATIHHLVKLIDTLTLVQ----QRSLTLPLLKE 212


>gi|332184913|ref|ZP_08386662.1| hypothetical protein SUS17_294 [Sphingomonas sp. S17]
 gi|332014637|gb|EGI56693.1| hypothetical protein SUS17_294 [Sphingomonas sp. S17]
          Length = 202

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 22/199 (11%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           D  L+  +   A R+++ W SWP+   IL GP  SG+S LA I++ +S  T         
Sbjct: 17  DAFLLTDSNRLAARMLEQWESWPTMAAILTGPRKSGRSLLARIFAARSNGT--------- 67

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +ID          D     + Q+FH  N+       LL+ A   P  W V LPDL S
Sbjct: 68  ---IID----------DAERVPEVQIFHAWNTAQAERRPLLIVADAPPPRWSVKLPDLRS 114

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           RL  +++ +I  PDD+ +  +   +F  R +     L  ++  R+ERS +   + VD +D
Sbjct: 115 RLANSSLAEIGAPDDELVAALFEHLFERRGLDARPDLIEWLTARVERSHLSVIRAVDMLD 174

Query: 221 NLALSRGMGITRSLAAEVL 239
             A+ R   ++ +LA   L
Sbjct: 175 QGAMERRARLSIALARSTL 193


>gi|329114266|ref|ZP_08243028.1| Hypothetical protein APO_1054 [Acetobacter pomorum DM001]
 gi|326696342|gb|EGE48021.1| Hypothetical protein APO_1054 [Acetobacter pomorum DM001]
          Length = 255

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 20/238 (8%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---DSWPSWPSRVVILVGP 72
           QK      + EQ+   F       R D +   +   A   +   ++   WP   + L G 
Sbjct: 18  QKRQNEATEAEQIALPFAHRPRFGRSDFVAAPSNAAARAWVLDAEAAARWPEGRMALWGE 77

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-ED-------IDLLDF--N 122
           SG+GK+ L +IW+      R+   A  ++   ++T +  +L ED       +D  D   N
Sbjct: 78  SGTGKTHLLSIWAG-----RYG--APIMEGSRLNTHEAAMLFEDGGFRAAALDNADKVPN 130

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
           +  L H+IN   +   +LLM AR  P  W V LPDL SRL+A   V +   ++  L +++
Sbjct: 131 ERDLLHLINLARERRVALLMAARRPPARWPVVLPDLASRLRATASVPLGPAEEGLLHRLL 190

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +++ A+RQI +  ++  ++++R+ R        V  +D  AL  G  ITR LAA VL+
Sbjct: 191 LRLLAERQIVVGAQVTEWLLRRLPRRASAMRDCVAMLDQAALESGGRITRDLAANVLE 248


>gi|262277378|ref|ZP_06055171.1| probable ATPase involved in DNA replication initiation [alpha
           proteobacterium HIMB114]
 gi|262224481|gb|EEY74940.1| probable ATPase involved in DNA replication initiation [alpha
           proteobacterium HIMB114]
          Length = 218

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 108/205 (52%), Gaps = 8/205 (3%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN---IA 97
           ++L+  ++    +  +D +P+W ++++ +VG   SGKS +  ++  K++    SN     
Sbjct: 18  ENLIRDTSNSNVLNFLDKFPNWDTKLINIVGEKKSGKSFILQLFRKKNQFNYISNKEDFE 77

Query: 98  KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +  D + +   K +L    D    N+ + F +IN    +   L++++R       + L D
Sbjct: 78  RKYDELFL-VDKLIL----DGFQINEDKFFSLINHFILHKKYLIISSREPLTILEIKLLD 132

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SRLK   +++I  P DD +  +I+K F+D QI I K L  YIV++++RS    EK + 
Sbjct: 133 LKSRLKEFLLIEIQNPSDDLIYSLILKYFSDNQIVIKKDLVEYIVKKIDRSYSSIEKFLI 192

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
           K+++ ++ +   I   L  EVL ET
Sbjct: 193 KLNDQSIIKKKKIDYKLINEVLNET 217


>gi|295689652|ref|YP_003593345.1| chromosomal replication initiator DnaA [Caulobacter segnis ATCC
           21756]
 gi|295431555|gb|ADG10727.1| Chromosomal replication initiator DnaA [Caulobacter segnis ATCC
           21756]
          Length = 229

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98
           +R+D  V  +   AV  +++WP+WP   + L+GP+G GK+ LA  W+    +        
Sbjct: 16  AREDFAVSPSNADAVARVEAWPAWPEGRLALIGPAGVGKTHLARAWAAAHDAVVVEATGD 75

Query: 99  SLDSILIDTRKPVLLEDIDL----LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               +     K +L+ED D        +D  LFHI+N       ++L+T R  PV W   
Sbjct: 76  DAPDLPALRGKAILVEDADRRAEGTALSDEALFHILNMAGVDGGTVLLTGRAAPVGWAAN 135

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           +PDL SRL A  V  I  PDD  LE V+ + F  R
Sbjct: 136 VPDLRSRLNALCVASIEAPDDVVLEAVLRRAFEHR 170


>gi|15892902|ref|NP_360616.1| hypothetical protein RC0979 [Rickettsia conorii str. Malish 7]
 gi|229586980|ref|YP_002845481.1| hypothetical protein RAF_ORF0880 [Rickettsia africae ESF-5]
 gi|15620092|gb|AAL03517.1| unknown [Rickettsia conorii str. Malish 7]
 gi|228022030|gb|ACP53738.1| DnaA-like protein [Rickettsia africae ESF-5]
          Length = 222

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  + +     ++EDI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TA     S    LPDL SR+K+   + ++ PDD+ ++ +I K FA   + I +++  +
Sbjct: 118 LLTAS--DKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      +++D ++  AL     IT SL  EVL +   
Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219


>gi|239948341|ref|ZP_04700094.1| chromosomal replication initiator protein DnaA [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922617|gb|EER22641.1| chromosomal replication initiator protein DnaA [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 222

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 114/219 (52%), Gaps = 11/219 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSNKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I  S +  +++     ++EDI+  ++ + +L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIFFSEE--ILEKYNAFIIEDIE--NWQEPELLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+     S    LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I +++  +
Sbjct: 118 LLTSSD--KSRNFTLPDLSSRIKSVLSIVLNSPDDELIKILIFKHFSISSVTISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           ++  + R      ++++ +++ AL     IT SL  EVL
Sbjct: 176 LLVNLPREYSKIIEILENINHFALISKRKITTSLVKEVL 214


>gi|238651086|ref|YP_002916944.1| hypothetical protein RPR_07330 [Rickettsia peacockii str. Rustic]
 gi|238625184|gb|ACR47890.1| hypothetical protein RPR_07330 [Rickettsia peacockii str. Rustic]
          Length = 222

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  + +     ++EDI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TA     S    LPDL SR+K+   + ++ PDD+ ++ +I K FA   + I +++  +
Sbjct: 118 LLTAS--DKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      +++D ++  AL     IT SL  EVL +   
Sbjct: 176 LLVNLPREYSKIIEILDNINYFALIAKRKITTSLVKEVLNKYNH 219


>gi|34581398|ref|ZP_00142878.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262783|gb|EAA26287.1| unknown [Rickettsia sibirica 246]
          Length = 222

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+  QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSSKYHPDEFIVSSSNNQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  + +     ++EDI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TA     S    LPDL SR+K+   + ++ PDD+ ++ +I K FA   + I +++  +
Sbjct: 118 LLTAS--DKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      +++D ++  AL     IT SL  EVL +   
Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219


>gi|157803499|ref|YP_001492048.1| hypothetical protein A1E_01590 [Rickettsia canadensis str. McKiel]
 gi|157784762|gb|ABV73263.1| hypothetical protein A1E_01590 [Rickettsia canadensis str. McKiel]
          Length = 222

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 11/225 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTPNKYHPDEFIVSSSNDQAYNIIQNWQHRFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  +++     ++EDI+  ++ +  L +I N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEILEQYNAFIIEDIE--NWQEPALLYIFNIINEKRKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+  F  S    LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I +++  +
Sbjct: 118 LLTS--FDKSKNFALPDLSSRIKSVLSIVLNSPDDELIKVLIFKHFSISSVIISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           ++  + R      ++++ ++ +AL+    IT SL  EVL +    
Sbjct: 176 LLVNLPREHSKIIEILENINQIALTSKRKITTSLVKEVLNKYSHT 220


>gi|157964779|ref|YP_001499603.1| hypothetical protein RMA_1009 [Rickettsia massiliae MTU5]
 gi|157844555|gb|ABV85056.1| DnaA-like protein [Rickettsia massiliae MTU5]
          Length = 227

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 7   QQYIFRFTTSNKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 66

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  +++     ++EDI+  ++ +  L HI N I++    L
Sbjct: 67  TKIWQNLSNAYIIKDIF--FNEEILEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 122

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TA     S    LPDL SR+K+   + ++ PDD+ ++ +I K FA   + I  ++  +
Sbjct: 123 LLTAS--DKSRNFTLPDLSSRIKSVLSMLLNSPDDELIKILIFKHFAISSVTISGQIIDF 180

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      +++D ++  AL     IT SL  EVL +   
Sbjct: 181 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 224


>gi|94497909|ref|ZP_01304474.1| ATPase [Sphingomonas sp. SKA58]
 gi|94422637|gb|EAT07673.1| ATPase [Sphingomonas sp. SKA58]
          Length = 216

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 22/216 (10%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           Q+   F    G    D LV  A   AV  ++ W  WP  + +L GP  SG+S LA     
Sbjct: 3   QISLPFEGHEGRGEGDFLVSDANRVAVAYLERWRDWPLSIAVLTGPPRSGRSTLAR---- 58

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTA 144
                +F+ ++              +++D    D   +D +LFH  N+       LL+  
Sbjct: 59  -----QFARMSGG-----------DVIDDAHEGDRPLDDHRLFHAWNAAQTEHRPLLLVG 102

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           +  P +W V LPDL SRL A   V I  PD+     +I + F          L  ++ +R
Sbjct: 103 QAPPATWPVTLPDLRSRLAAVPHVGIDAPDEMLTRALIQRSFDAAGAAYSADLPDWLARR 162

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++RS    E +   +D  ALS G  I+ ++A E L+
Sbjct: 163 IDRSYAAIETITRLLDRAALSSGRKISVAMAKEALQ 198


>gi|157828827|ref|YP_001495069.1| hypothetical protein A1G_05380 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933553|ref|YP_001650342.1| hypothetical protein RrIowa_1158 [Rickettsia rickettsii str. Iowa]
 gi|157801308|gb|ABV76561.1| hypothetical protein A1G_05380 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908640|gb|ABY72936.1| DnaA-related protein [Rickettsia rickettsii str. Iowa]
          Length = 222

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGINPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  + +     +++DI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIDDIE--NWQEPTLLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TA     S    LPDL SR+K+   + ++ PDD+ ++ +I K FA   + I +++  +
Sbjct: 118 LLTAS--DKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAIASVTISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      +++D ++  AL     IT SL  EVL +   
Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219


>gi|190571370|ref|YP_001975728.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018769|ref|ZP_03334577.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357642|emb|CAQ55086.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995720|gb|EEB56360.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 211

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 26/191 (13%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--------- 111
           SW  + +IL GP+ SGK+ LA+IW  K+            D+I ID    V         
Sbjct: 36  SW--KCLILFGPNSSGKTHLAHIWQSKN------------DAIFIDVNNFVSEMRYSDAF 81

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +LED+  +  ++  L H  N + + D  LL+T+   P      L DL SR+ +   VKI 
Sbjct: 82  ILEDVQNIK-DEEMLLHCYNYMKENDKRLLITSSILPKKLNFKLKDLSSRILSTISVKIL 140

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
              ++ L  +++K F+D+Q+ ID K+  YI+ R+ERS     K+++K+DN ++  G  +T
Sbjct: 141 PASEELLRIMLIKQFSDKQLKIDLKVIDYILARIERSFHSINKVIEKIDNESI--GSNVT 198

Query: 232 RSLAAEVLKET 242
                 +LK++
Sbjct: 199 IPFINTLLKKS 209


>gi|148261518|ref|YP_001235645.1| ATPase involved in DNA replication initiation-like protein
           [Acidiphilium cryptum JF-5]
 gi|146403199|gb|ABQ31726.1| ATPase involved in DNA replication initiation-like protein
           [Acidiphilium cryptum JF-5]
          Length = 247

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 3/180 (1%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           W +R ++L G +GSGKS LA IW+ ++ +TR    A  L +       P+L+EDID    
Sbjct: 45  WVNRRLVLWGEAGSGKSHLAWIWAARTCATRLD--AARLRTPASPGGAPLLIEDIDAAAA 102

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                  +  +  Q    +LMT RT P    V  PDL SRL+A+  ++I   + + L+ +
Sbjct: 103 PLALFATLERAT-QAAVPVLMTCRTPPARLPVEPPDLASRLRASLTIRIEPAEPELLDAL 161

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + ++ A RQ+ +   L  +++ R+ R      + + ++D  AL+ G   +R LA  +L E
Sbjct: 162 LHRLAAARQMSLPPALHQFLLTRLPRRPAVLREAIARLDRYALALGTAPSRRLAERLLDE 221


>gi|58584988|ref|YP_198561.1| DNA replication initiation ATPase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419304|gb|AAW71319.1| Possible ATPase involved in DNA replication initiation, DnaA
           paralog [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 211

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 10/181 (5%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLL 119
           SW  + + L GP GSGK+ LA+IW   + +  F N+   +  I        +LED+ D+ 
Sbjct: 36  SW--KYLFLFGPKGSGKTHLAHIWQSINNAI-FINVNNFISEIRYSN--AFILEDVQDIQ 90

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           D  +  L H  N + + +  LL+T+ T P      L DL SR+ +    KI    ++ L 
Sbjct: 91  D--EATLLHCYNYMKENNKRLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLR 148

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K F+D+Q+ +D K+  YI+ R+ERS     ++++K+DN ++  G  +T    + +L
Sbjct: 149 IMLIKRFSDKQLKVDLKVINYILARIERSFCSINRIIEKIDNGSM--GSNVTIPFVSTLL 206

Query: 240 K 240
           K
Sbjct: 207 K 207


>gi|326405005|ref|YP_004285087.1| hypothetical protein ACMV_28580 [Acidiphilium multivorum AIU301]
 gi|325051867|dbj|BAJ82205.1| hypothetical protein ACMV_28580 [Acidiphilium multivorum AIU301]
          Length = 237

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 3/180 (1%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           W +R ++L G +GSGKS LA IW+ ++ +TR    A  L +       P+L+EDID    
Sbjct: 35  WVNRRLVLWGEAGSGKSHLAWIWAARTCATRLD--AARLRTPASPGGAPLLIEDIDAAAA 92

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                  +  +  Q    +LMT RT P    V  PDL SRL+A+  ++I   + + L+ +
Sbjct: 93  PLALFATLERAT-QAAVPVLMTCRTPPARLPVEPPDLASRLRASLTIRIEPAEPELLDAL 151

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + ++ A RQ+ +   L  +++ R+ R      + + ++D  AL+ G   +R LA  +L E
Sbjct: 152 LHRLAAARQMSLPPALHQFLLTRLPRRPAVLREAIARLDRYALALGTAPSRRLAERLLDE 211


>gi|157826035|ref|YP_001493755.1| hypothetical protein A1C_04965 [Rickettsia akari str. Hartford]
 gi|157799993|gb|ABV75247.1| hypothetical protein A1C_04965 [Rickettsia akari str. Hartford]
          Length = 222

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 112/228 (49%), Gaps = 19/228 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ EQA  ++ +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSNKYHHDEFIVSSSNEQAYNIVKNWQYSFGVNPYKFTVLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +     ++ +++     ++EDI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKD--SFFNAEILEKYNACIIEDIE--NWQEPALLHIFNIINEKQKYL 117

Query: 141 LMTA----RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
           L+T+    R F       LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I  +
Sbjct: 118 LLTSSDKTRNF------TLPDLSSRIKSVLSIALNSPDDELIKILIFKHFSISSVTISGQ 171

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +  +++  + R      ++++ +++ AL     IT SL  EVL     
Sbjct: 172 IIDFLLVNLPREYSKIIEILENINHSALISKRKITTSLVKEVLNNYHH 219


>gi|67458792|ref|YP_246416.1| hypothetical protein RF_0400 [Rickettsia felis URRWXCal2]
 gi|67004325|gb|AAY61251.1| DnaA-like protein [Rickettsia felis URRWXCal2]
          Length = 222

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ EQA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFITSNKYHPDEFIVSSSNEQAYNIIKNWQCNFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  +++     ++E+I+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEILEKYNAFIIENIE--NWQEPALLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+     S    LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I  ++  +
Sbjct: 118 LLTSSN--KSRNFTLPDLSSRIKSVLSIALNSPDDELIKILIFKHFSISSVTISGQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      ++++ ++  AL     IT SL  EVL +   
Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITTSLVKEVLNKYNH 219


>gi|15604478|ref|NP_220996.1| hypothetical protein RP631 [Rickettsia prowazekii str. Madrid E]
 gi|3861172|emb|CAA15072.1| unknown [Rickettsia prowazekii]
 gi|292572260|gb|ADE30175.1| DnaA-like protein [Rickettsia prowazekii Rp22]
          Length = 221

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 111/219 (50%), Gaps = 11/219 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP----SWPSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+  QA  +I +W     + P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFHFTPSNKYHPDEFIVSSSNAQAYNIIKNWQYCFGANPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  +++     ++EDI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYLIKDIF--FNEEILEKYNTFIIEDIE--NWQEPTLLHIFNVINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+     +    LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I +++  +
Sbjct: 118 LLTSSD--KNNNFTLPDLSSRIKSVLSILLNAPDDELIKILIFKHFSISSVTISQQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           ++  + R      ++++ ++  AL     IT SL  EVL
Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITISLVKEVL 214


>gi|114328698|ref|YP_745855.1| dnaA-like protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316872|gb|ABI62932.1| dnaA-related protein [Granulibacter bethesdensis CGDNIH1]
          Length = 246

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 3/185 (1%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           WP   + L G  G+GK+ L +IW+D   + R      SL  +      PV ++D D    
Sbjct: 41  WPQGRLGLFGDEGTGKTHLLSIWADLQEAER--RPGPSLRGLPRAPLAPVAVDDADATP- 97

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
           ++  L H+IN+  +    +L+ +R  P  W V LPDL SRL+A + V I  PDD  L  +
Sbjct: 98  DEAALLHLINAAAEAGVPILLASRLPPARWRVTLPDLASRLRATSSVGILPPDDALLRAL 157

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + ++  +RQ+ +   L ++++ R+ R+     ++  ++D  AL+ G  +T+ LAA +L  
Sbjct: 158 LERLLTERQLSVPPSLQSWLLLRLPRTAWAVREVAARLDRAALAEGGRVTKILAARILNG 217

Query: 242 TQQCD 246
             + D
Sbjct: 218 LCESD 222


>gi|68171570|ref|ZP_00544945.1| chromosomal DNA replication initiator-related protein [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658126|ref|YP_507704.1| hypothetical protein ECH_0913 [Ehrlichia chaffeensis str. Arkansas]
 gi|67999011|gb|EAM85687.1| chromosomal DNA replication initiator-related protein [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599583|gb|ABD45052.1| conserved hypothetical protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 218

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 20/191 (10%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV---------- 111
           W S   IL G SGSGK+ LA+IW  K ++  F      +D  LI+T+K +          
Sbjct: 37  WNS--FILYGKSGSGKTHLAHIWQ-KLKNAIF------IDQHLINTKKDIGDTISNGNAF 87

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++E+ID +D N+  + H  N I +    LLMT+   P        DL SR+      K++
Sbjct: 88  IIENIDNID-NELSMLHHYNYIKENKKLLLMTSSIAPTLLNYHTKDLKSRILHTMSAKLA 146

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            PD++ L+ +++K+FAD+QI I+ K+  YI+   ERS      +V  +D        G+T
Sbjct: 147 NPDEELLKIMLIKLFADKQIHIELKVINYILNNTERSFQNLSNIVKCIDRNLPYYNNGVT 206

Query: 232 RSLAAEVLKET 242
                 ++++ 
Sbjct: 207 IPFVKSIIEKN 217


>gi|73666826|ref|YP_302842.1| chromosomal DNA replication initiator-related protein [Ehrlichia
           canis str. Jake]
 gi|72393967|gb|AAZ68244.1| chromosomal DNA replication initiator-related protein [Ehrlichia
           canis str. Jake]
          Length = 218

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 20/191 (10%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV---------- 111
           W S   IL G SGSGK+ LA+IW  K ++  F      +D  LI+T++ +          
Sbjct: 37  WNS--FILYGKSGSGKTHLAHIWQ-KLKNAIF------IDQYLINTKEDIGDIISNNNAF 87

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++E+ID +D N+  + H  N I +    LLMT+   P      + DL SR+      K++
Sbjct: 88  IIENIDNID-NELSILHYYNYIKENKKLLLMTSSIAPRLLNYHIKDLKSRILHTMSAKLA 146

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            PD++ L+ +++K+FAD+QI I+ K+  YI+   ERS      +V  +D        G+T
Sbjct: 147 NPDEELLKIMLIKLFADKQIHIELKVINYILNNTERSFQNLSNIVKCIDRNLPYYNNGVT 206

Query: 232 RSLAAEVLKET 242
                 ++++ 
Sbjct: 207 IPFVKSIIEKN 217


>gi|42520947|ref|NP_966862.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58696878|ref|ZP_00372391.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698753|ref|ZP_00373637.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|99034226|ref|ZP_01314294.1| hypothetical protein Wendoof_01000909 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|225630699|ref|YP_002727490.1| chromosomal DNA replication initiator-related protein [Wolbachia
           sp. wRi]
 gi|42410688|gb|AAS14796.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58534726|gb|EAL58841.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536904|gb|EAL60088.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592680|gb|ACN95699.1| chromosomal DNA replication initiator-related protein [Wolbachia
           sp. wRi]
          Length = 211

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 8/181 (4%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           SW  + +IL GP  SGK+ LA+IW   + +  F N+   +  I        +LED+  + 
Sbjct: 36  SW--KCLILFGPKSSGKTHLAHIWQSINDAI-FINVNNFVSEI--RYSDAFILEDVQNIK 90

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
            ++  L H  N + + D  LL+T+   P      L DL SR+ +   VKI    ++ L  
Sbjct: 91  -DEAMLLHCYNYMKENDKRLLITSSISPKKLNFKLRDLSSRILSTISVKILPASEELLRI 149

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +++K F+D+Q+ ID K+  YI+ R+ERS    +K+++K+DN ++  G  +T    + +LK
Sbjct: 150 MLIKRFSDKQLKIDLKVINYILARIERSFYSIDKIIEKIDNESI--GSNVTVPFISTLLK 207

Query: 241 E 241
           +
Sbjct: 208 K 208


>gi|254294273|ref|YP_003060296.1| DNA replication ATPase [Hirschia baltica ATCC 49814]
 gi|254042804|gb|ACT59599.1| ATPase-like protein involved in DNA replication initiation
           [Hirschia baltica ATCC 49814]
          Length = 240

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 7/224 (3%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           K +QL   FP+ L    + L+   A E A   +  W  WP R + L+G +GSGK+ +   
Sbjct: 16  KSKQLVLDFPK-LDADLEPLIATPASEDARLALSRWEYWPERQMCLIGSAGSGKTRMLRN 74

Query: 84  WSDKSRSTRFSNI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           W+  + +   + +   A  +D I   + K +++++ D    N   L   +N      + L
Sbjct: 75  WAQDTGAAYVTGVDLSAAEIDEISGLSVKALVVDNADSCS-NGGSLLAAMNLCKSRGAFL 133

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L++  T P SW +   DL SRL A  VVK    D++ L+  +V     + + +  + A Y
Sbjct: 134 LLSGSTDPSSWNMKPLDLQSRLSALPVVKFGAIDEETLKIRLVSACKSKFMKLPDETADY 193

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +VQR+ R+ +  +++V+K++ +A   G  + R+ A + +   +Q
Sbjct: 194 LVQRLARTYLVIDEIVEKLELVA--AGKALNRTTARKAIAALEQ 235


>gi|294012891|ref|YP_003546351.1| putative ATPase [Sphingobium japonicum UT26S]
 gi|292676221|dbj|BAI97739.1| putative ATPase [Sphingobium japonicum UT26S]
          Length = 204

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 94/214 (43%), Gaps = 22/214 (10%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           Q+   F R    + D+ LV  A   AVR +++W +WP  V +L GP  SG+S L   ++ 
Sbjct: 3   QISLPFDRPDHATADEFLVSDANRIAVRHLENWRNWPLAVSVLSGPPLSGRSTLGRHFAA 62

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
           +S  T            +ID          D    ++  LF+  N        LL+ A  
Sbjct: 63  QSGGT------------VID----------DAQRQDERTLFNAWNDAQTAQRPLLLMADA 100

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P  W V LPDL SRL AA  V +  PD+     +I +  +         L  ++++R+E
Sbjct: 101 PPAIWQVALPDLRSRLAAAPHVALEEPDEALARALIERSLSSAGASYAADLPEWLLRRIE 160

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           RS          +D  ALS G  I+ ++A  VL+
Sbjct: 161 RSYAAITAATRLLDEAALSSGRKISTAMAKHVLQ 194


>gi|149186108|ref|ZP_01864422.1| ATPase [Erythrobacter sp. SD-21]
 gi|148830139|gb|EDL48576.1| ATPase [Erythrobacter sp. SD-21]
          Length = 203

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           WP    IL GP+ SGKS  +  ++  +                        ++D D  D 
Sbjct: 38  WPFGTAILAGPARSGKSLFSRWFASHTGGG--------------------AIDDADQKD- 76

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
            +T++FH  N   +    LL+T       W + LPDL SR+ AA  ++I  PDDD   ++
Sbjct: 77  -ETEIFHAWNRAREDGYPLLLTVDAG--GWEIALPDLRSRMGAALQLEIGAPDDDLAAEL 133

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++   A R + + +   AY++ RMERS    E++V ++D L+L R    T S+  + L  
Sbjct: 134 MLSHAAQRGLALGEGAPAYLIPRMERSHAAIERIVAEIDRLSLERKAPATMSIWRDALDA 193

Query: 242 TQ 243
            Q
Sbjct: 194 VQ 195


>gi|296115157|ref|ZP_06833798.1| Chromosomal replication initiator DnaA [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978258|gb|EFG84995.1| Chromosomal replication initiator DnaA [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 252

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL   F      +R D +   +   A   +    +WP R + L G  G GK+ L  IW+ 
Sbjct: 9   QLVLPFAHMQHFTRADFVAARSNAVARAWLLGRTAWPDRRLALWGARGCGKTHLLEIWAA 68

Query: 87  KSRSTRFSN-------IAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS 139
           +  +   S        +A+   +        + ++D +    ++  + H++N   ++  +
Sbjct: 69  EHDAVLLSGADLTCGDVARLFGAGRGSGVVAIAVDDAECC-ADERAVLHLLNGAREHGMA 127

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           L ++ R  P  W V LPDL SRL+A   V++  P+D  L  V++++ A+RQI +   +  
Sbjct: 128 LALSGRRPPARWPVTLPDLASRLRATMAVEVRQPEDMLLRVVLLRLLAERQIVVAPAIVD 187

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +++ R+ R+     ++  ++D+  L+ G  +TR++A   L +
Sbjct: 188 WLLPRLPRTAATMLEVARRLDHATLATGRAVTRAMAVGELHD 229


>gi|57238925|ref|YP_180061.1| hypothetical protein Erum1920 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578857|ref|YP_197069.1| hypothetical protein ERWE_CDS_01930 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161004|emb|CAH57910.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417483|emb|CAI26687.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 230

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 8/152 (5%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----NIAKSLDSILIDTRKPVLLEDID 117
           W S   IL G SGSGK+ LA+IW     +   +    N  K ++++ I +    ++E+I+
Sbjct: 37  WSS--FILYGKSGSGKTHLAHIWQKLKNAIFINHDLINTGKGIENV-ISSSNAFIIENIE 93

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            +  N++   H  N I +    LLMT+   P      + DL SR+      K++ PD++ 
Sbjct: 94  NIS-NESSTLHYYNYIKENKKILLMTSSIAPRFLNYKIKDLKSRMLYTMNAKLANPDEEL 152

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           L+ +++K+F DRQI I+ K+  YI+   ERS 
Sbjct: 153 LKIMLIKLFVDRQIHIELKVINYILNNTERSF 184


>gi|58616915|ref|YP_196114.1| hypothetical protein ERGA_CDS_01880 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416527|emb|CAI27640.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 230

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 8/152 (5%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----NIAKSLDSILIDTRKPVLLEDID 117
           W S   IL G SGSGK+ LA+IW     +   +    N  K ++++ I +    ++E+I+
Sbjct: 37  WSS--FILYGKSGSGKTHLAHIWQKLKNAIFINHDLINTGKGIENV-ISSSNAFIIENIE 93

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            +  N++   H  N I +    LLMT+   P      + DL SR+      K++ PD++ 
Sbjct: 94  NIS-NESSTLHYYNYIKENKKILLMTSSIAPRFLNYKIKDLKSRMLYTMNAKLANPDEEL 152

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           L+ +++K+F DRQI I+ K+  YI+   ERS 
Sbjct: 153 LKIMLIKLFVDRQIHIELKVINYILNNTERSF 184


>gi|307293975|ref|ZP_07573819.1| putative ATPase [Sphingobium chlorophenolicum L-1]
 gi|306880126|gb|EFN11343.1| putative ATPase [Sphingobium chlorophenolicum L-1]
          Length = 204

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 22/216 (10%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           Q+   F R      D+ LV  A   AVR +++W +WP  V +L GP  SG+S L   ++ 
Sbjct: 3   QISLPFDRPDQAKADEFLVSEANRIAVRHLENWRNWPLAVSLLSGPPLSGRSTLGRHFAA 62

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
           +S  T            +ID          D    ++  LF+  N        LL+ A  
Sbjct: 63  QSGGT------------VID----------DAQRQDERTLFNAWNDAQTAQRPLLLIADA 100

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P  W V LPDL SRL AA  V +  PD+     +I +  +         L  ++++R+E
Sbjct: 101 PPAIWHVALPDLRSRLAAAPHVALHQPDEALARALIERSLSSTGASYAADLPEWLLRRIE 160

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           RS          +D  +LS G  I+ ++A  VL++ 
Sbjct: 161 RSYAAIAAATRLLDEASLSSGRKISTAMAKHVLQDA 196


>gi|218510164|ref|ZP_03508042.1| hypothetical protein RetlB5_23469 [Rhizobium etli Brasil 5]
          Length = 69

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/61 (67%), Positives = 50/61 (81%)

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +IVK+FADRQ++ID KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL 
Sbjct: 1   MIVKLFADRQLYIDDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLN 60

Query: 241 E 241
           E
Sbjct: 61  E 61


>gi|51473811|ref|YP_067568.1| hypothetical protein RT0622 [Rickettsia typhi str. Wilmington]
 gi|51460123|gb|AAU04086.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 221

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+  QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSNKYHPDEFIVSSSNAQAYNIIKNWQCCFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I   L+  +++     ++EDI+   + +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--LNEEILEKNNTFIIEDIE--SWQEPALLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+     +    LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I +++   
Sbjct: 118 LLTSS--DKNDNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDL 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      ++++ ++  AL     IT SL  EVL   + 
Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLNNYKN 219


>gi|269959014|ref|YP_003328803.1| hypothetical protein ACIS_01000 [Anaplasma centrale str. Israel]
 gi|269848845|gb|ACZ49489.1| hypothetical protein ACIS_01000 [Anaplasma centrale str. Israel]
          Length = 221

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 4/177 (2%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLLDFNDTQ 125
           +L G SGSGK+ LA++W  K R   F    + +   +   R+   V++EDID L  +++ 
Sbjct: 44  VLYGKSGSGKTHLAHMWK-KLRKANFICYDQVIGEAIGAIRESSAVIIEDIDNLS-DESW 101

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           + H  N   +    LLMT+   P      L DL SR+ +A    ++ PD++ L  ++VK+
Sbjct: 102 VLHCYNFAREAGKPLLMTSSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKL 161

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           F DRQ+ ID +   YI+  +ERS      +V+ +D    +   G+T      V++ +
Sbjct: 162 FTDRQMHIDIRTVNYILNNVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIRRS 218


>gi|56416571|ref|YP_153645.1| hypothetical protein AM296 [Anaplasma marginale str. St. Maries]
 gi|222474938|ref|YP_002563353.1| hypothetical protein AMF_220 [Anaplasma marginale str. Florida]
 gi|255002912|ref|ZP_05277876.1| hypothetical protein AmarPR_01147 [Anaplasma marginale str. Puerto
           Rico]
 gi|255004040|ref|ZP_05278841.1| hypothetical protein AmarV_01241 [Anaplasma marginale str.
           Virginia]
 gi|56387803|gb|AAV86390.1| hypothetical protein AM296 [Anaplasma marginale str. St. Maries]
 gi|222419074|gb|ACM49097.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
          Length = 221

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 4/175 (2%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLLDFNDTQ 125
           +L G SGSGK+ LA++W  K R   F    + +   +   R+   V++EDID L  +++ 
Sbjct: 44  VLYGKSGSGKTHLAHMWQ-KLRKASFICHGQVIGEAIGTIRESSAVIIEDIDNLR-DESW 101

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           + H  N   +    LLMT+   P      L DL SR+ +A    ++ PD++ L  ++VK+
Sbjct: 102 VLHCYNFAREAGKPLLMTSSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKL 161

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           F DRQ+ ID +   YI+  +ERS      +V+ +D    +   G+T      V++
Sbjct: 162 FTDRQMHIDVRTVNYILNNVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIR 216


>gi|254994786|ref|ZP_05276976.1| hypothetical protein AmarM_01237 [Anaplasma marginale str.
           Mississippi]
          Length = 221

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 4/175 (2%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLLDFNDTQ 125
           +L G SGSGK+ LA++W  K R   F    + +   +   R+   V++EDID L  +++ 
Sbjct: 44  VLYGKSGSGKTHLAHMWQ-KLRKASFICHGQVIGEAIGTIRESSAVIIEDIDNLR-DESW 101

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           + H  N   +    LLMT+   P      L DL SR+ +A    ++ PD++ L  ++VK+
Sbjct: 102 VLHCYNFAREAGKPLLMTSSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKL 161

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           F DRQ+ ID +   YI+  +ERS      +V+ +D    +   G+T      V++
Sbjct: 162 FTDRQMHIDIRTVNYILNNVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIR 216


>gi|85374595|ref|YP_458657.1| ATPase [Erythrobacter litoralis HTCC2594]
 gi|84787678|gb|ABC63860.1| ATPase [Erythrobacter litoralis HTCC2594]
          Length = 209

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 24/186 (12%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           +WP    IL+GP  SGKS L     ++ ++T    +    DS                  
Sbjct: 43  AWPFGTAILMGPPRSGKSLLGRWVEEQGKAT----VIDGADS------------------ 80

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
            ++T LFH  N   Q    LL+ A     SW + LPDL SRL AA  V+I  PDD  L  
Sbjct: 81  ESETTLFHRWNRAQQNGEKLLLIADG--ESWHITLPDLKSRLGAALHVEIGTPDDAMLGD 138

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +++     R + + +    Y++ R  RS    EKLV  +D L+L R +  T  +  + L+
Sbjct: 139 LVLSHATRRGLALGEDALTYLIPRATRSFADIEKLVGHIDRLSLERKVAPTLGIWRDALE 198

Query: 241 ETQQCD 246
             Q  +
Sbjct: 199 AVQGPE 204


>gi|88607408|ref|YP_505556.1| hypothetical protein APH_0994 [Anaplasma phagocytophilum HZ]
 gi|88598471|gb|ABD43941.1| conserved hypothetical protein [Anaplasma phagocytophilum HZ]
          Length = 220

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 8/188 (4%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-LIDTRKPVLLED 115
           D W S+     +L G  GSGK+ LA++W  K +   F    K  D+I +I     V+ ED
Sbjct: 38  DLWSSF-----VLYGVKGSGKTHLAHLWG-KLKQASFLTYGKISDAIQVIKESNAVIAED 91

Query: 116 IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           ID +  ++  L H  N   +     LMTA   P      L DL SR+ +    K+  P++
Sbjct: 92  IDSIP-DEEWLLHCYNYSKENRKPFLMTASVPPNLLNHSLKDLRSRIISTMSAKLVEPNE 150

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           + L  ++VK+F +RQ+ ID K   YI+  +ERS      +V  +D    S   G+T    
Sbjct: 151 ELLRIMLVKLFTERQLHIDIKTINYILNNVERSFKKLSDIVRLIDIELTSSAGGVTVPFV 210

Query: 236 AEVLKETQ 243
             +++  +
Sbjct: 211 RSIIRRVE 218


>gi|88608364|ref|YP_506085.1| hypothetical protein NSE_0190 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600533|gb|ABD46001.1| conserved hypothetical protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 223

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +  + ++L G S SGK+ +  +W+ K  +   SN+ +     +        ++DID L  
Sbjct: 39  FSQKPIVLKGHSKSGKTHIGRVWASKHGADILSNLTEQTHFAI---HNHCFIDDIDKLTT 95

Query: 122 NDT--QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
            +    L HI N   +    LLMT R+  + +   LPDL SRL+++    I  PDD+ L 
Sbjct: 96  QEEIEALLHIYNGAIESGKILLMTTRS--LDFSDVLPDLSSRLRSSITYSIPPPDDELLR 153

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            VI K F   Q  + +K+   ++QR++RSL      V  ++  AL +G    + ++A + 
Sbjct: 154 VVIRKQFYLYQTRVSEKIVDLVLQRVDRSLEAVVDFVALLNREALHKG----KPISARLF 209

Query: 240 KETQQC 245
            E   C
Sbjct: 210 HEASAC 215


>gi|326386755|ref|ZP_08208376.1| ATPase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208808|gb|EGD59604.1| ATPase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 212

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 28/184 (15%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           +WP R  +L GP  SGKS LA  W                    + + +   L+D D L 
Sbjct: 35  TWPYRTAVLSGPPRSGKSLLAR-W-------------------FVSSGQGDALDDADRLP 74

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPV-----SWGVCLPDLCSRLKAATVVKISLPDD 175
             + ++FH  N        LL+ +R  PV      W + LPDL SRL AA  + I  PDD
Sbjct: 75  --EVEVFHRWNRAQADGRPLLLVSRQ-PVVAGGDGWRITLPDLASRLGAALPLAIGAPDD 131

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
             L  ++ +    R + I + +  +++ R+ERS   AE LV  +D L+L R   +T +L 
Sbjct: 132 ILLRALVEEHARRRGLMIGESVLDWLLPRIERSHAAAEALVATIDRLSLERKAPVTLALV 191

Query: 236 AEVL 239
            + L
Sbjct: 192 RDAL 195


>gi|91205351|ref|YP_537706.1| hypothetical protein RBE_0536 [Rickettsia bellii RML369-C]
 gi|157826952|ref|YP_001496016.1| hypothetical protein A1I_03070 [Rickettsia bellii OSU 85-389]
 gi|91068895|gb|ABE04617.1| Chromosomal replication initiator protein DnaA-like protein
           [Rickettsia bellii RML369-C]
 gi|157802256|gb|ABV78979.1| hypothetical protein A1I_03070 [Rickettsia bellii OSU 85-389]
          Length = 220

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 105/208 (50%), Gaps = 10/208 (4%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILV-GPSGSGKSCLANIWSDKSRST 91
           P    +S  + LV++A++      +S+   P ++ +L+ GP+ SGK+ L  IW + S + 
Sbjct: 15  PEEFIVSESNALVYNALQNWQ---NSFGVNPYKLTLLIKGPASSGKTYLTKIWQNLSNAY 71

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
              +I    D  ++      ++EDI+  ++ +T L H+ N I++    LL+T+       
Sbjct: 72  IIKDIF--FDDKILANHTAFIIEDIE--NWQETALLHLFNLINEKQKYLLLTSNN--KGK 125

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
              LPDL SR+ +   V +  PDD+ ++ +I K FA   + I + +  +++  + R    
Sbjct: 126 NFTLPDLSSRINSILNVLLYPPDDELIKILIFKHFATSSVTISQIVIDFLLVNLPREYNR 185

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVL 239
             ++++ ++N AL+    IT  L  E L
Sbjct: 186 ILEILEYINNFALTSKRKITIPLVKEAL 213


>gi|254796578|ref|YP_003081414.1| hypothetical protein NRI_0184 [Neorickettsia risticii str.
           Illinois]
 gi|254589811|gb|ACT69173.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 179

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 11/182 (6%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT--Q 125
           +L G S SGK+ +  +W+ K  +   SN+ +     +        ++DID L   +    
Sbjct: 1   MLKGHSKSGKTHIGRVWASKHGADILSNLTEQAHFAI---HNHCFIDDIDKLTTQEEIEA 57

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           L HI NS  +    LLMT R+  + +   LPDL SRL+A+    I  PDD+ L  V  K 
Sbjct: 58  LLHIYNSAIESGKILLMTTRS--LDFSDVLPDLSSRLRASITYSIPPPDDELLRVVTRKQ 115

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL----AAEVLKE 241
           F   Q  + +K+   ++QR++RSL      V  ++  AL +G  I+  L    +A V K+
Sbjct: 116 FYLYQTRVSEKVVNLVLQRVDRSLEAVVDFVALLNREALHKGKPISARLFHEASAYVSKQ 175

Query: 242 TQ 243
            Q
Sbjct: 176 NQ 177


>gi|58040365|ref|YP_192329.1| DnaA-related protein [Gluconobacter oxydans 621H]
 gi|58002779|gb|AAW61673.1| DnaA-related protein [Gluconobacter oxydans 621H]
          Length = 253

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 3/182 (1%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDIDLL 119
           WP   + L G SG+GK+ L   W+ +  +T       + S     I  +  + +++ D  
Sbjct: 67  WPDGRLWLWGSSGTGKTHLLTAWAHEHDATVLDARLFSTSSAGGRIRVQGNLAIDNADS- 125

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
             ++  + H++N        +LM  R  P      LPDL SRL+A        P+DD   
Sbjct: 126 PGDEATMLHLLNDAFSQGDRVLMAGRLPPSRSHFMLPDLASRLRATATTATGEPEDDLRA 185

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++ + ADRQ+ + + +  ++ + + R+       V+++D  AL+R   ITR+LA E+L
Sbjct: 186 TLLLSLLADRQLVVSQTVTEWLWRHLPRTGNALVSAVERLDEAALARKRPITRALAMEML 245

Query: 240 KE 241
            +
Sbjct: 246 PD 247


>gi|330813923|ref|YP_004358162.1| chromosomal replication initiator protein DnaA [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487018|gb|AEA81423.1| chromosomal replication initiator protein DnaA [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 208

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 15/209 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           E+ FF    C+  S  D+  +         +  WP+W   ++ + GP  SGK+ L  ++ 
Sbjct: 12  EEYFFEEDFCISQSNQDVCNY---------LRKWPNWDDNIINIFGPKKSGKTFLLTVFE 62

Query: 86  DKSRSTRFSNIAKSLDSILIDT---RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            K+   R S  A +L+   + +   +  +++ED++  + ++  LF + N     +  L+ 
Sbjct: 63  RKNSFFRIS--ANTLNKETVSSALSQDRLIIEDVEE-NTDEELLFLLFNEFKNNNKYLIF 119

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           ++          L DL SR K+   ++IS P D  L  V++K  +++QI I K+L  + +
Sbjct: 120 SSTQDSSRISFQLQDLSSRFKSMLNLEISNPSDTLLCSVLMKQLSEKQITIKKELITHTI 179

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           +R+ERS     K    +D  +L     +T
Sbjct: 180 KRIERSYDSVNKFSVMIDEESLKNKKKLT 208


>gi|85709210|ref|ZP_01040276.1| ATPase [Erythrobacter sp. NAP1]
 gi|85690744|gb|EAQ30747.1| ATPase [Erythrobacter sp. NAP1]
          Length = 186

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 31/191 (16%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           SWP    +L GP  SGKS L N  + +                         +E ID  D
Sbjct: 17  SWPFNTAVLTGPPRSGKSLLGNWAAGQG------------------------IEVIDRAD 52

Query: 121 -FNDTQLFHIINSIHQYDS----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
             ++ ++FH  N++ +  S     LL+ A + P  W + LPDL SRL  +  + I  PDD
Sbjct: 53  TLDEAEVFHRWNAVQEGGSRAGTKLLLIADSTP--WEISLPDLKSRLGGSLQLAIGDPDD 110

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
               ++I      R + + +  A Y+V R  RS    E LV  +D ++L R    T S+ 
Sbjct: 111 AMAAQLIEAHAEARGLTLAEGAADYLVPRTRRSFADIEALVRTIDRISLERAAPATMSVW 170

Query: 236 AEVLKETQQCD 246
              L+     D
Sbjct: 171 RAALEALHGPD 181


>gi|110834432|ref|YP_693291.1| hypothetical protein ABO_1571 [Alcanivorax borkumensis SK2]
 gi|110647543|emb|CAL17019.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 245

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 19/153 (12%)

Query: 98  KSLDSILIDTRK-----PVLLEDID---LLDFNDTQLF-----------HIINSIHQYDS 138
             LD+ L+  R+     P +LE ++   LL  +D QLF           H+ N +     
Sbjct: 83  NGLDACLLPAREIIPLVPEVLESMEQFGLLAIDDCQLFAGLPAWEEALFHLYNRLMSLGG 142

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            LL+TA   P + G+ LPDL +RL A  V ++   +DD L+ ++ +    R + ++ ++A
Sbjct: 143 RLLVTANASPAAMGLMLPDLATRLAAGPVYRLMSLEDDDLQALLQERAKARGLRLEPEVA 202

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            YIV R ERS      L+ K+D LAL++   +T
Sbjct: 203 HYIVLRSERSAGALMALLAKLDRLALAQQRPVT 235


>gi|56551607|ref|YP_162446.1| DNA replication initiation ATPase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761267|ref|ZP_04759355.1| ATPase involved in DNA replication initiation [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752800|ref|YP_003225693.1| chromosomal replication initiator, DnaA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543181|gb|AAV89335.1| ATPase involved in DNA replication initiation [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241374174|gb|EER63671.1| ATPase involved in DNA replication initiation [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258552163|gb|ACV75109.1| chromosomal replication initiator, DnaA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 214

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 22/205 (10%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           D +V  A   AV  +  W  WP +  +L G   SG+S L  ++  ++      N  +  +
Sbjct: 24  DFIVSDANNIAVEQLRLWQKWPVKSALLTGMRKSGRSLLGRLFVARTGGELIDNAERRSE 83

Query: 102 SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
             +                      FH  N   +    LL+ A   P  W + LPDL SR
Sbjct: 84  EFI----------------------FHAWNRAERLKRPLLVIADQPPPLWKIRLPDLRSR 121

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           + A+  + I  PDD  +  +I +    R + +  ++  ++  R+E + +     +DK+D 
Sbjct: 122 MIASPHLVIKAPDDSLIAALIERRLGRRGLPVSTEILEWVTPRIEHNYIAVLDWIDKLDQ 181

Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246
            AL R   IT ++   ++   +  D
Sbjct: 182 AALKRRGPITLNMVRAIMAGEEIPD 206


>gi|254492445|ref|ZP_05105617.1| chromosomal replication initiator protein DnaA [Methylophaga
           thiooxidans DMS010]
 gi|224462337|gb|EEF78614.1| chromosomal replication initiator protein DnaA [Methylophaga
           thiooxydans DMS010]
          Length = 234

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 15/187 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL---EDIDLLDFND 123
           + L G +G+GK+ L    ++K +   F  I  SL   LI T +P +L   E  DLL  +D
Sbjct: 46  LYLYGETGTGKTHLLIACAEKVQKLGFRVIYLSLAE-LIQTSEPAVLQSLEQADLLCLDD 104

Query: 124 TQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +           LFH  N +H    SLL++A   P +  + LPDLCSRL    V +++ 
Sbjct: 105 LEAVAGNKEWEVALFHCFNRLHDAKGSLLVSAEHNPANSQIQLPDLCSRLATGLVYQLTT 164

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
             D+  ++ ++     R + ++  +A Y+++   R +     ++ ++D  +L     +T 
Sbjct: 165 MSDEQKQQALILQSQKRGLTMNDDVAQYLLRHYGRDMPALMSVLQQLDKASLQAKRKLTI 224

Query: 233 SLAAEVL 239
               +VL
Sbjct: 225 PFIRQVL 231


>gi|121997504|ref|YP_001002291.1| chromosomal replication initiator, DnaA [Halorhodospira halophila
           SL1]
 gi|121588909|gb|ABM61489.1| regulatory inactivation of DnaA Hda protein [Halorhodospira
           halophila SL1]
          Length = 241

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 12/193 (6%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI---------DTRKPVLLEDI 116
            + L GP G GKS L      +  +     +   LD +L          +  + + L+D+
Sbjct: 42  ALYLHGPHGVGKSHLLQGACRRVTTAGGVAVYLPLDQLLGHGAAVLDGWEQAQLIALDDL 101

Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           D LD  D     +FH+ N + +    LL   R  P    + LPDL SRL    VV +  P
Sbjct: 102 DALDGRDEWQGAVFHLYNRVVERGGRLLFAGRQPPAELPLDLPDLRSRLGWGPVVAVREP 161

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D+     ++ +  A R + +    A Y+++R+ R L       + +D  +L+ G  +T  
Sbjct: 162 DETTCLAILRQRAAQRGLELPDATARYLIRRLPRELPGLLAFFETLDRASLAAGRRLTVP 221

Query: 234 LAAEVLKETQQCD 246
              E+L E  + D
Sbjct: 222 FVREILAERSRPD 234


>gi|254427815|ref|ZP_05041522.1| chromosomal replication initiator protein DnaA [Alcanivorax sp.
           DG881]
 gi|196193984|gb|EDX88943.1| chromosomal replication initiator protein DnaA [Alcanivorax sp.
           DG881]
          Length = 229

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 113 LEDIDLLDFNDTQLF-----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
           +E   LL  +D QLF           H+ N +      LL+TA   P + G+ LPDL +R
Sbjct: 90  MEQFGLLAIDDCQLFAGLPAWEEALFHLYNRLMSLGGRLLVTANASPGAMGLMLPDLATR 149

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           L A  V ++   +D+ L+ ++ +    R + ++ ++A YIV R ERS     +L+  +D 
Sbjct: 150 LAAGPVYRLMSLEDEDLQALLQERARARGLRLEPEVAHYIVLRSERSAGALMELLSDLDR 209

Query: 222 LALSRGMGIT 231
           LAL++   +T
Sbjct: 210 LALAQQRSVT 219


>gi|114798512|ref|YP_760956.1| hypothetical protein HNE_2261 [Hyphomonas neptunium ATCC 15444]
 gi|114738686|gb|ABI76811.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 243

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 11/207 (5%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           ++   Q   SFP  +    D L+     E AV L     +W +  + + GP+  G + LA
Sbjct: 9   QDGPAQPLLSFPVPV-AHWDGLISGGPNEAAVGLASRPEAWATHALCVTGPARCGLTYLA 67

Query: 82  NIWSDK-----SRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIH 134
             W+ +       +  F  +   +LD +       V L+D+D++    D  L    N I 
Sbjct: 68  RAWAGRFGGQYMTAAEFGALKLGALDGL---AGGYVALDDVDMIAARRDEPLLLFYNMIA 124

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
                +L+ A T P  W   + DL SRL +  V +IS PD+  +   +    A R + + 
Sbjct: 125 AKGGRVLLVAHTGPAGWRTGIADLRSRLNSMPVAEISQPDEAHVRARLRAAAAQRFMKLS 184

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDN 221
            +   Y+V R++ S    E L+D++  
Sbjct: 185 PETINYLVPRIDLSYEAIETLMDRLSG 211


>gi|226945733|ref|YP_002800806.1| DNA replication initiation factor [Azotobacter vinelandii DJ]
 gi|226720660|gb|ACO79831.1| DnaA family protein, probable Hda [Azotobacter vinelandii DJ]
          Length = 234

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 22/211 (10%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106
           +A+  A RL +    W   ++ L G  G G+S L      +    R   +A  L    + 
Sbjct: 28  AALGYAERLCEPDAGWTESLIYLWGAEGVGRSHLLQAACIRFEQRR--ELAIYLPLAEVA 85

Query: 107 TRKPVLLEDID---LLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWG 152
              PVLL++++   L+  +D +           LFH+ N +      LL++A   P    
Sbjct: 86  DYGPVLLDNLEQSELVCLDDLEAIAGRADWEEALFHLFNRLRDCGRRLLLSASVPPRELS 145

Query: 153 VCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
           + LPDL SRL  A V ++  L D+D L  + ++  + R + +  ++  +I+ R  RS+  
Sbjct: 146 IELPDLKSRLTLALVFQLQGLSDEDKLRALQLRA-SRRGLHLTDEVGRFILTRGSRSMAA 204

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              L+DK+D  +L       R L    LKET
Sbjct: 205 LFDLLDKLDQASLQ----AQRRLTIPFLKET 231


>gi|261855342|ref|YP_003262625.1| DnaA regulatory inactivator Hda [Halothiobacillus neapolitanus c2]
 gi|261835811|gb|ACX95578.1| DnaA regulatory inactivator Hda [Halothiobacillus neapolitanus c2]
          Length = 233

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 10/165 (6%)

Query: 71  GPSGSGKSCLAN----IWSDKSRSTRFSNIAKS---LDSILIDTRKPVLLEDIDLLDFND 123
           G    GK+ LA         + RS  + ++ K+   LD + +     ++L+D+D L  +D
Sbjct: 53  GAQNCGKTHLAQAACFYAGQQGRSAAYIDVKKNPSQLDHMNLSHIDLLVLDDVDALAGDD 112

Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                LF +IN + + +  LLMTA   P + G  LPDL SRL     + I  P++    +
Sbjct: 113 QGEFLLFDLINRLREQEIPLLMTASLPPAACGFQLPDLLSRLGWGITMLIHAPNEAEKIE 172

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           ++ +   +R   +  + A Y++QR  R L    K++  +D+ +LS
Sbjct: 173 LLRRKAQERGFDLPFESAVYLLQRSPRDLGSLLKIIQDLDHASLS 217


>gi|117925602|ref|YP_866219.1| regulatory inactivation of DnaA Hda protein [Magnetococcus sp.
           MC-1]
 gi|117609358|gb|ABK44813.1| regulatory inactivation of DnaA Hda protein [Magnetococcus sp.
           MC-1]
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 28/240 (11%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL  +FP    +S ++L+V +    A+  +    +     +IL G +G+GK+ L      
Sbjct: 7   QLLIAFPLDPVLSWENLVVGAHNTIAIHGVRQLEAAKVPGLILTGAAGAGKTHLLQAAVA 66

Query: 87  KSRSTRFSNIAKSLD--------------------SILIDTRKPVLLEDIDLLDFNDTQL 126
             R+    + A  LD                    S  ID      L  ID L+  +  +
Sbjct: 67  SVRAQYGEHAAVYLDLATLSKHLENQPKAHSEALLSRFIDRYGSCRLAAIDELELLEHAV 126

Query: 127 ------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                  ++ N +      LL   R  P +      DL SRL    V+ I  PD+  L +
Sbjct: 127 GLQEGVLYLYNRLRVAGGHLLGAGREDPSTMSGLRDDLRSRLLWGPVLHIDEPDEVALGQ 186

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSL-VFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           ++ KM ADRQ+ + + +  +++ R+ RS+ VFA+  + ++D  AL +   +T  LA EVL
Sbjct: 187 IMDKMAADRQLRLSEAVRHFLLLRLPRSVPVFAQT-IQRLDEEALRQQRALTVPLAKEVL 245


>gi|289207741|ref|YP_003459807.1| DnaA regulatory inactivator Hda [Thioalkalivibrio sp. K90mix]
 gi|288943372|gb|ADC71071.1| DnaA regulatory inactivator Hda [Thioalkalivibrio sp. K90mix]
          Length = 243

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 13/156 (8%)

Query: 67  VILVGPSGSGKSCL--ANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L GPSGSGK+ L  A  +    R    S      +A++    ++D  +   L  +D L
Sbjct: 54  ILLHGPSGSGKTHLLQAACYQGHERGDPVSYLPLGEVAEAPPMAVLDGLERSCLVALDDL 113

Query: 120 DFN------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +        D  LF ++N +      +L+ A   P    V LPDL SRL    V ++  P
Sbjct: 114 EAVVGRGDWDEALFGLVNRLRDAGCRVLLAAAAPPEGLPVRLPDLASRLAWGPVFRMQRP 173

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           DD   ++++ +  A R + + + +A Y+++R  R L
Sbjct: 174 DDVACKEILAQRAALRGLELPEPVADYLLRRCSRDL 209


>gi|254283923|ref|ZP_04958891.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR51-B]
 gi|219680126|gb|EED36475.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR51-B]
          Length = 237

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 14/182 (7%)

Query: 69  LVGPSGSGKSCLANIWSDKSRS-------TRFSNI--AKSLDSILIDTRKPVLLEDIDLL 119
           L G +GSGKS L       + +         F++   A+ LD I  D    V L+DID +
Sbjct: 51  LFGGAGSGKSHLLQASCAATTAPALYIPLAEFADYPAAQVLDGI--DALSLVALDDIDRI 108

Query: 120 DFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             + +    LFH  N      + LL++A +        L DL SRL +    ++  PDDD
Sbjct: 109 AGDSSWEEALFHAFNLCVGSGTRLLVSASSTASQIDFTLADLQSRLGSLAAFRLPRPDDD 168

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
            LE+++      R I +  ++  YIV R  R       L++K+D  AL+R   +T  L  
Sbjct: 169 SLERMLDLRAGHRGITLSAEVKRYIVTRAPRDSHAVMALLEKLDTAALARHRLVTIPLIK 228

Query: 237 EV 238
           E+
Sbjct: 229 EL 230


>gi|88812592|ref|ZP_01127840.1| hypothetical protein NB231_08610 [Nitrococcus mobilis Nb-231]
 gi|88790186|gb|EAR21305.1| hypothetical protein NB231_08610 [Nitrococcus mobilis Nb-231]
          Length = 244

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 16/192 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL---EDIDLLDF 121
           RV+ L G  G GKS L      ++ +   + +   L  ++   R P LL   E +D++  
Sbjct: 52  RVIYLYGEPGVGKSHLLQAACGEASAWGRAVVYLPLRQLV--NRSPRLLQELEGVDVVAL 109

Query: 122 ND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +D              FH+ N +      LLM     P   G+ LPDL SRL+   V+++
Sbjct: 110 DDLDCLTKAIEWQQAAFHLFNRLQDAGRELLMAGPRRPAKLGLALPDLVSRLQGVLVLRL 169

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+     + +    R + + K  A Y++    R   +  +L+DK D  +L     +
Sbjct: 170 EKLGDEDNVLALSRRAQRRGLELPKATARYLLNHCRRDTGYFFQLLDKFDAASLQAQRRL 229

Query: 231 TRSLAAEVLKET 242
           T     +VL E 
Sbjct: 230 TVPFVKKVLAEA 241


>gi|325916438|ref|ZP_08178710.1| regulatory inactivation of DnaA Hda protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537358|gb|EGD09082.1| regulatory inactivation of DnaA Hda protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 233

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 12/177 (6%)

Query: 67  VILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSI-----LIDTRKPVLLEDID 117
           + L GP+G+GK+ LA           R+T +  +  +   +      ++ R  V L+ +D
Sbjct: 44  LYLAGPAGTGKTHLALAVCAAAEQAGRATAYLPLQAAAGRLRDALEALEGRSLVALDGVD 103

Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
            +     ++  LF   N      +SLL TAR  P    + LPDL SRL     + + +PD
Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGTSLLYTARQMPDGLALILPDLRSRLSQCIRIGLPVPD 163

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           D     V+      R + +D     +++   ER L     L++++D  +L+    IT
Sbjct: 164 DAARAAVLRDRAQRRGLALDDAAIDWLLTHSERELATLVALLERLDRESLAAKRRIT 220


>gi|254496112|ref|ZP_05109011.1| DnaA-like family protein [Legionella drancourtii LLAP12]
 gi|254354653|gb|EET13289.1| DnaA-like family protein [Legionella drancourtii LLAP12]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 16/190 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKP---VLLEDI 116
           R++ L G SGSGKS L          T+ +     N+ K      I+  +    V ++DI
Sbjct: 38  RLLYLWGASGSGKSHLLQASCQAVNLTQSAIYLPLNLLKEWGPQTIEGLEEQALVCIDDI 97

Query: 117 DLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI-S 171
           D +  +   +  LFH+ N I   D  LL+ +    P +  + LPDL SRL    V+++  
Sbjct: 98  DAIAEDSAWEEALFHLYNKIKDLDKGLLIISGNQSPTTLAIKLPDLRSRLSWGLVIQLME 157

Query: 172 LPDDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           L D+D +    +K+ A R+ F + + +  +++ R  R++   ++L++++D+ +L+    I
Sbjct: 158 LSDEDKIN--TLKLHALRRGFDLPESVGQFLLNRCSRNMHDLQQLLNRLDDASLAAQRKI 215

Query: 231 TRSLAAEVLK 240
           T     E LK
Sbjct: 216 TIPFVKETLK 225


>gi|269468308|gb|EEZ79987.1| DnaA family protein [uncultured SUP05 cluster bacterium]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 24/197 (12%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------- 110
           S    PS VV + G   SG++ L        +   F+ + + L+   ID  +        
Sbjct: 35  STQKAPS-VVYVYGGKSSGRTHLL-------QGCAFAALKEKLEVTYIDFNQDLPDGVMD 86

Query: 111 -------VLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                  V L++++ L+ N  Q LF + N   Q    L+M+    P    + L DL +RL
Sbjct: 87  NLESLDWVCLDNVNCLNENQQQELFDLYNRSVQTQVKLIMSGDDLPTELNL-LKDLKTRL 145

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             AT+  +   DDD  ++VI     +R I I+ K+  Y+ +   R+L    K +D +D  
Sbjct: 146 SLATIFHLESLDDDSKKEVIQSKMKNRNIAIENKVYDYLFKYYSRNLTDLLKAIDCLDEA 205

Query: 223 ALSRGMGITRSLAAEVL 239
           +L +   IT  L  +VL
Sbjct: 206 SLQQKNNITIPLIKQVL 222


>gi|325924382|ref|ZP_08185921.1| regulatory inactivation of DnaA Hda protein [Xanthomonas gardneri
           ATCC 19865]
 gi|325545143|gb|EGD16458.1| regulatory inactivation of DnaA Hda protein [Xanthomonas gardneri
           ATCC 19865]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 16/179 (8%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTRFSN------IAKSLDSIL--IDTRKPVLLEDID 117
           + L GP+G+GK+ LA ++ +   ++ R S        A  L   L  ++ R  V+L+ +D
Sbjct: 44  LYLAGPAGTGKTHLALSLCAAAEQAGRASAYLPLHAAAGRLRDALEALEGRSLVVLDGLD 103

Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173
            +     ++  LF   N      ++LL TAR  P    + LPDL SRL  +  ++ISLP 
Sbjct: 104 TIAGQRDDEVALFDFHNRARAAGTTLLYTARQMPDGLALVLPDLRSRL--SQCIRISLPV 161

Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            DD     V+      R + +D+    +++   ER L     L+D++D  +L+    IT
Sbjct: 162 LDDAGRAAVLRDRAQRRGLALDEAAIDWLLIHSERELAGLVALLDRLDRESLAAKRRIT 220


>gi|188990770|ref|YP_001902780.1| hypothetical protein xccb100_1374 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732530|emb|CAP50724.1| replication related protein [Xanthomonas campestris pv. campestris]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 16/171 (9%)

Query: 69  LVGPSGSGKSCLA-NIWSDKSRSTRFSN------IAKSLDSIL--IDTRKPVLLEDIDLL 119
           L GPSG+GK+ LA ++ +   ++ R S        A  L   L  ++ R  V L+ +D +
Sbjct: 46  LAGPSGTGKTHLALSVCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSVVALDGVDSI 105

Query: 120 DF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-D 175
                ++  LF   N       +LL TAR  P    + LPDL SRL  +  V+ISLP  D
Sbjct: 106 AGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCVRISLPVLD 163

Query: 176 DFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           D     +++  A R+ + +D+    +++   ER L     L+D++D  +L+
Sbjct: 164 DVARAAVLRDRAQRRGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLA 214


>gi|149378135|ref|ZP_01895854.1| DNA replication initiation factor [Marinobacter algicola DG893]
 gi|149357580|gb|EDM46083.1| DNA replication initiation factor [Marinobacter algicola DG893]
          Length = 238

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDI 116
           V+ + G + +GKS L       +   + S+I  S++ +L         ++ +  + L+D+
Sbjct: 51  VIAVCGDADTGKSHLLQAACHLAEQNQQSSICVSMEELLPLGPDSLSGLEGQSVICLDDL 110

Query: 117 DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           DL+   +     +FH+ N ++ +   ++++    P S    L DL SRL     +++ + 
Sbjct: 111 DLIAGQENWEEAIFHLYNRVNDHGHLMVVSLSELPASLPFGLQDLVSRLSHGLTIQLGIH 170

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
            DD   ++++     R + +   +A +I++R  R L     ++D++D  +L
Sbjct: 171 RDDDRLRILMARAEQRGLVLSDDVAVFILRRAPRKLADLLAILDRLDENSL 221


>gi|21232217|ref|NP_638134.1| hypothetical protein XCC2786 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767654|ref|YP_242416.1| hypothetical protein XC_1327 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113975|gb|AAM42058.1| replication related protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572986|gb|AAY48396.1| replication related protein [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 233

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 16/171 (9%)

Query: 69  LVGPSGSGKSCLA-NIWSDKSRSTRFSN------IAKSLDSIL--IDTRKPVLLEDIDLL 119
           L GPSG+GK+ LA ++ +   ++ R S        A  L   L  ++ R  V L+ +D +
Sbjct: 46  LAGPSGTGKTHLALSVCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGVDSI 105

Query: 120 DF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-D 175
                ++  LF   N       +LL TAR  P    + LPDL SRL  +  V+ISLP  D
Sbjct: 106 AGQCEDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCVRISLPVLD 163

Query: 176 DFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           D     +++  A R+ + +D+    +++   ER L     L+D++D  +L+
Sbjct: 164 DVARAAVLRDRAQRRGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLA 214


>gi|319944441|ref|ZP_08018715.1| DNA replication initiation protein A [Lautropia mirabilis ATCC
           51599]
 gi|319742402|gb|EFV94815.1| DNA replication initiation protein A [Lautropia mirabilis ATCC
           51599]
          Length = 219

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R   + GP GSGKS LA   +    +++  N+              ++++D+D       
Sbjct: 48  RFFYIWGPEGSGKSHLAGALT----ASQCPNL--------------MVVDDVDRYSKGRQ 89

Query: 125 Q-LFHIINS-IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
           + LFH  N+ I Q D +L++     P    + LP+L SRL    V  +   DD+ L   +
Sbjct: 90  RTLFHRFNALIDQPDHALVVFGNQPPARLKL-LPELVSRLSWGMVFSLQPLDDNALADAL 148

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +   +R + + + L+ Y+++   R +   + ++D +D LA +R   +T  L  + L+  
Sbjct: 149 EQSARERGLNLGQDLSTYLLRHTRRDMASLKTILDGLDRLAWARKKPLTLPLLKDYLQSQ 208

Query: 243 QQC 245
           +Q 
Sbjct: 209 RQA 211


>gi|85711719|ref|ZP_01042776.1| ATPase involved in DNA replication initiation [Idiomarina baltica
           OS145]
 gi|85694579|gb|EAQ32520.1| ATPase involved in DNA replication initiation [Idiomarina baltica
           OS145]
          Length = 242

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 17/190 (8%)

Query: 65  RVVILVGPSGSGKS-CLANIWSDKSRSTRF----------SNIAKSLDSILIDTRKPVLL 113
           R+ +L GPSGSGKS  L +I S   + T+           SN  + L  +  D    + L
Sbjct: 53  RLTLLSGPSGSGKSHLLHSIVSLAGQHTQVMYLPLADLKESNAEQVLAGL--DAFNIICL 110

Query: 114 EDIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           +DID +  + T   +LF +IN+I   +   L+MTA        V L DL SRL+ AT  +
Sbjct: 111 DDIDTVLKDPTWCYELFKLINTITDAEHCRLMMTAHASASQLSVELADLRSRLQWATAFQ 170

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           +S  +DD     +      R + +   +A +++ R+ R +      +D++D  +++    
Sbjct: 171 LSPLNDDGKASALTLRAQWRGLQLPHDVAIFMLHRLGRDMAGLLAHLDQLDKASIAHQRK 230

Query: 230 ITRSLAAEVL 239
           +T     +VL
Sbjct: 231 LTIPFVKQVL 240


>gi|39996180|ref|NP_952131.1| chromosomal replication initiator protein DnaA, truncation
           [Geobacter sulfurreducens PCA]
 gi|39982945|gb|AAR34404.1| chromosomal replication initiator protein DnaA, truncation
           [Geobacter sulfurreducens PCA]
          Length = 258

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 99/261 (37%), Gaps = 44/261 (16%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVI 68
           P K ++ +P     QL F FP     S D+ ++ +  E A R    L D   S    ++ 
Sbjct: 5   PGKARSSRP-FPAMQLVFDFPVTPKYSFDNFVICAGNETACRFARRLTDE--SGSENLLY 61

Query: 69  LVGPSGSGKS--------CLAN-----------------IWSDKSRSTRFSNIAKSLDSI 103
           L GPSGSGK+        C A                  I+  +  +   S +A+     
Sbjct: 62  LHGPSGSGKTHLLMAMGACFAGRVGLRAVPCISFKDVDEIYHGEYPAEEVSRLAERFRG- 120

Query: 104 LIDTRKPVLLEDIDLLDFNDTQ-----LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                 P LL D DL    D Q     L+ + N  +Q    + +T    P         L
Sbjct: 121 -----APALLVD-DLHLIPDQQSVRVELWQLFNDFYQAGRPIAITGLNPPNELPTLDGHL 174

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SRL    V K  + DDD   +++ K+  DRQI +      Y++  + R +      +D 
Sbjct: 175 TSRLLWGLVAKTDISDDDSRRRIMQKLADDRQIILPADAVDYLLVHVRRDVPSLVAALDA 234

Query: 219 MDNLALSRGMGITRSLAAEVL 239
           +   A S    IT  LA E L
Sbjct: 235 ITRYAFSAKRKITMRLAREAL 255


>gi|91792999|ref|YP_562650.1| DNA replication initiation factor [Shewanella denitrificans OS217]
 gi|91715001|gb|ABE54927.1| regulatory inactivation of DnaA Hda protein [Shewanella
           denitrificans OS217]
          Length = 236

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 93/190 (48%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLAN----IWSDKSRSTRFS--NIAKSLDSIL---IDTRKPVLLE 114
           S  + + GP  SG++ L +    + +DK R T +    I  S+   L   +++ + + ++
Sbjct: 46  SSSLYIYGPVKSGRTHLMHAACALANDKDRRTLYIPLGIHASISPALFEGLESLELICID 105

Query: 115 DIDLLDFN---DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           DID +  +   +  +FH+ N I ++ D  L+++ +  P   G  LPDL SR++   + ++
Sbjct: 106 DIDAIAGHPIWEEAIFHLYNRIAEHKDCHLIVSGKASPTEAGFLLPDLVSRMQWGLIYQL 165

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               DD     + +  A R + +  ++  +++ RM R L     ++DK+D  ++     +
Sbjct: 166 QPMADDEKLLALQRRAAMRGLQLSDEVGRFLLTRMARDLRTLFDVLDKLDKASMVHQRKL 225

Query: 231 TRSLAAEVLK 240
           T     E+L+
Sbjct: 226 TIPFIKEMLR 235


>gi|315126230|ref|YP_004068233.1| regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas sp. SM9913]
 gi|315014744|gb|ADT68082.1| regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas sp. SM9913]
          Length = 228

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 16/190 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLED 115
           +   L G   SGKS L      +++    SN+  S+  ++         ++    + ++D
Sbjct: 40  QYTYLCGLGDSGKSHLLYATCIQAQERGLSNMLLSMREVIHFGPMVLDGLEALDVLCIDD 99

Query: 116 IDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           + L+  ND     LF+  N  ++ +  L++TA   P    + LPDL SRLK  T  +I  
Sbjct: 100 VHLVAGNDAWEKALFNFFNRFNEPNKMLVVTADLLPNMLNISLPDLESRLKWGTTFQIRS 159

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
             DD   + +VK    R + +  + A +++ R+ R +     ++DK+D+ +    M   R
Sbjct: 160 MSDDDKAQALVKRANMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHAS----MAAQR 215

Query: 233 SLAAEVLKET 242
            L    +K T
Sbjct: 216 KLTIPFIKST 225


>gi|77360843|ref|YP_340418.1| regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875754|emb|CAI86975.1| putative regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 228

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 18/191 (9%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFN 122
           +   L G   SGKS L      +++    SN+  S+  + ID    VL  LE +D+L  +
Sbjct: 40  QYTYLCGLGDSGKSHLLYATCIQAQERGLSNMLLSMREV-IDFGPMVLEGLEALDVLCID 98

Query: 123 DTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           D  L           F+  N  ++    L++TA   P    + LPDL SRLK  T ++I 
Sbjct: 99  DVHLVAGDDAWEKALFNFFNRFNEPKKMLVVTADLLPDMLNISLPDLESRLKWGTTLQIR 158

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
              DD   + +VK    R + +  + A +++ R+ R +     ++DK+D+ +    M   
Sbjct: 159 SMSDDDKAQALVKRTKMRGLELSDECARFLLTRLSRDMRTLLDVLDKLDHAS----MAAQ 214

Query: 232 RSLAAEVLKET 242
           R L    +K T
Sbjct: 215 RKLTIPFIKST 225


>gi|152987343|ref|YP_001349911.1| DNA replication initiation factor [Pseudomonas aeruginosa PA7]
 gi|150962501|gb|ABR84526.1| DnaA regulatory inactivator Hda [Pseudomonas aeruginosa PA7]
          Length = 234

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------WSDKSRSTRFSNIAKS 99
           +A+    RL ++   W   ++ L G  G G+S L          + +++     +++ + 
Sbjct: 28  AALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLLQAACLRFEQFEERTIYLPMADLVQY 87

Query: 100 LDSILIDTRKP--VLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
              I  D  +   V ++D+D+L      +  LFH+ N +      LL+ A   P    V 
Sbjct: 88  GPEIFDDLEQCELVCIDDLDVLVGKRNWEEGLFHLFNRLRDTGRRLLLAASKSPRELQVK 147

Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           LPDL SRL  A + ++  L D+D L  + ++  + R + +  ++  +I+ R  RS+    
Sbjct: 148 LPDLKSRLTMALIFQLHGLSDEDKLRALQLRA-SRRGLHLTDEVGRFILNRGSRSMNSLF 206

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            L++++D  +L       R L    LKET
Sbjct: 207 DLLEQLDRASLQ----AQRKLTIPFLKET 231


>gi|88706615|ref|ZP_01104318.1| DnaA-like protein hda [Congregibacter litoralis KT71]
 gi|88699111|gb|EAQ96227.1| DnaA-like protein hda [Congregibacter litoralis KT71]
          Length = 234

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 19/185 (10%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQ 125
           L G +G GKS L       +    +  +A+     L       LLE+++   LL  ++ +
Sbjct: 53  LHGAAGEGKSHLLQALCHATAGALYLPLAE-----LRGAHPGALLENLETAALLALDNLE 107

Query: 126 -----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
                      LFH++N        L + AR+  +  G+ LPDL SRL       ++  +
Sbjct: 108 HIAGDGEWEEALFHLMNRARAAQCPLWVAARSPAMDLGIELPDLRSRLGGGVTWAMTPAN 167

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           D+ + +++      R + +   +A+Y+  R  R+L      ++++DN +L R   +T  L
Sbjct: 168 DEEMRRILQFRAERRGLAMPDAVASYLCARETRALGDLMDTLNRLDNASLQRQRPLTVPL 227

Query: 235 AAEVL 239
             EV+
Sbjct: 228 VREVM 232


>gi|107100403|ref|ZP_01364321.1| hypothetical protein PaerPA_01001428 [Pseudomonas aeruginosa PACS2]
 gi|313105833|ref|ZP_07792096.1| hypothetical protein PA39016_000110130 [Pseudomonas aeruginosa
           39016]
 gi|310878598|gb|EFQ37192.1| hypothetical protein PA39016_000110130 [Pseudomonas aeruginosa
           39016]
          Length = 225

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------WSDKSRSTRFSNIAKS 99
           +A+    RL ++   W   ++ L G  G G+S L          + +++     +++ + 
Sbjct: 19  AALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLLQAACLRFEQFEERTIYLPMADLVQY 78

Query: 100 LDSILIDTRKP--VLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
              I  D  +   V ++D+D+L      +  LFH+ N +      LL+ A   P    V 
Sbjct: 79  GPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFHLFNRLRDTGRRLLLAASKSPRELQVK 138

Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           LPDL SRL  A + ++  L D+D L  + ++  + R + +  ++  +I+ R  RS+    
Sbjct: 139 LPDLKSRLTMALIFQLHGLSDEDKLRALQLRA-SRRGLHLTDEVGRFILNRGSRSMNSLF 197

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            L++++D  +L       R L    LKET
Sbjct: 198 DLLEQLDRASLQ----AQRKLTIPFLKET 222


>gi|330504184|ref|YP_004381053.1| DNA replication initiation factor [Pseudomonas mendocina NK-01]
 gi|328918469|gb|AEB59300.1| DNA replication initiation factor [Pseudomonas mendocina NK-01]
          Length = 234

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106
           +A+    RL ++   W   ++ L G  G G+S L      ++   RF    +++  + + 
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGAEGVGRSHLL-----QAACLRFEQRGEAVVYLPLG 82

Query: 107 ---TRKPVLLEDIDLLDFN--------------DTQLFHIINSIHQYDSSLLMTARTFPV 149
                 P LL++++L +                +  LFH+ N +      LL+     P 
Sbjct: 83  EVVQHGPELLDNLELCELVCLDDLDAVAGRSDWEEGLFHLFNRLRDSGRRLLLAGTMSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              + LPDL SRL  A V ++  L D+D L  + ++  + R + +  ++  +I+ R ERS
Sbjct: 143 ELPIQLPDLKSRLTLALVFQLHELSDEDKLRALQLRA-SRRGLQMGDEVGRFILTRGERS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +     L++++D  +L       R L    LKET
Sbjct: 202 MSALFDLLERLDQASLQ----AQRKLTIPFLKET 231


>gi|15596144|ref|NP_249638.1| DNA replication initiation factor [Pseudomonas aeruginosa PAO1]
 gi|116048871|ref|YP_792328.1| DNA replication initiation factor [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893083|ref|YP_002441952.1| DNA replication initiation factor [Pseudomonas aeruginosa LESB58]
 gi|254239298|ref|ZP_04932621.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254245231|ref|ZP_04938553.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296390698|ref|ZP_06880173.1| DNA replication initiation factor [Pseudomonas aeruginosa PAb1]
 gi|9946853|gb|AAG04336.1|AE004529_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115584092|gb|ABJ10107.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171229|gb|EAZ56740.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126198609|gb|EAZ62672.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218773311|emb|CAW29123.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 234

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------WSDKSRSTRFSNIAKS 99
           +A+    RL ++   W   ++ L G  G G+S L          + +++     +++ + 
Sbjct: 28  AALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLLQAACLRFEQFEERTIYLPMADLVQY 87

Query: 100 LDSILIDTRKP--VLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
              I  D  +   V ++D+D+L      +  LFH+ N +      LL+ A   P    V 
Sbjct: 88  GPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFHLFNRLRDTGRRLLLAASKSPRELQVK 147

Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           LPDL SRL  A + ++  L D+D L  + ++  + R + +  ++  +I+ R  RS+    
Sbjct: 148 LPDLKSRLTMALIFQLHGLSDEDKLRALQLRA-SRRGLHLTDEVGRFILNRGSRSMNSLF 206

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            L++++D  +L       R L    LKET
Sbjct: 207 DLLEQLDRASLQ----AQRKLTIPFLKET 231


>gi|332534259|ref|ZP_08410104.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036339|gb|EGI72810.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 236

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 18/191 (9%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFN 122
           +   L G   SGKS L      K++    SN+  S+  + ID    VL  LE +D+L  +
Sbjct: 48  QYTYLCGLGDSGKSHLLYATCIKAQERGLSNMLLSMREV-IDFGPMVLDGLEALDVLCID 106

Query: 123 DTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           D  L           F+  N  ++    L++TA   P    + LPDL SRL   T  +I 
Sbjct: 107 DVHLVAGNDAWEKALFNFFNRFNEPGKMLVVTADLLPSMLNISLPDLESRLTWGTTFQIR 166

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
              DD   + +VK    R + +  + A +++ R+ R +     ++DK+D+ +    M   
Sbjct: 167 SMSDDDKAQALVKRAHMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHAS----MAAQ 222

Query: 232 RSLAAEVLKET 242
           R L    +K T
Sbjct: 223 RKLTIPFIKST 233


>gi|146308015|ref|YP_001188480.1| DNA replication initiation factor [Pseudomonas mendocina ymp]
 gi|145576216|gb|ABP85748.1| regulatory inactivation of DnaA Hda protein [Pseudomonas mendocina
           ymp]
          Length = 234

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS---LDSI 103
           +A+    RL ++   W   ++ L G  G G+S L      ++   RF     +   L   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGAEGVGRSHLL-----QAACLRFEQRGDAVVYLPLT 82

Query: 104 LIDTRKPVLLEDIDLLDFN--------------DTQLFHIINSIHQYDSSLLMTARTFPV 149
            +    P LL++++L +                +  LFH+ N +      LL+     P 
Sbjct: 83  EVVQHGPELLDNLELCELVCLDDLDAVAGRSDWEEGLFHLFNRLRDSGRRLLLAGTMSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              + LPDL SRL  A V ++  L D+D L  + ++  + R + +  ++  +I+ R ERS
Sbjct: 143 ELPIQLPDLKSRLTLALVFQLHELSDEDKLRALQLRA-SRRGLQMSDEVGRFILTRGERS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 202 MSALFELLERLDQASLQ----AQRKLTIPFLKET 231


>gi|330941426|gb|EGH44239.1| DNA replication initiation factor [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 234

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   V+ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTQSVIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            +ID    +   LE  +L+  +D Q           LFH+ N +      LL+ A   P 
Sbjct: 83  EVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPP 142

Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              V LPDL SRL  A V ++  L D+D L  + ++  + R + +   +  +I+ R  RS
Sbjct: 143 QLPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231


>gi|331013495|gb|EGH93551.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 234

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            +ID    +   LE  +L+  +D Q           LFH+ N +      LL+ A   P 
Sbjct: 83  EVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFHLFNRLRDSGRRLLIAASKSPP 142

Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              V LPDL SRL  A V ++  L D+D L  + ++  + R + +  ++  +I+ R  RS
Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231


>gi|327481530|gb|AEA84840.1| DNA replication initiation factor [Pseudomonas stutzeri DSM 4166]
          Length = 234

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL--ANIWSDKSRST-----RFSNIAKS 99
           +A+    RL      W   ++ L G  G G+S L  A     + R         + +A+ 
Sbjct: 28  AALGYVERLCSPAAGWSDELIYLWGQPGVGRSHLLQAACLRVEERGELAVYLPLAEVAEY 87

Query: 100 LDSIL--IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
             ++L  ++  + V L+D+D +  +   +  LFH+ N +      LL+ A   P    + 
Sbjct: 88  GPALLDNLEQSELVCLDDLDAVAGDAIWEEALFHLFNRLRDAGRRLLLAADASPRELAIK 147

Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           LPDL SRL  A V ++  L D+D L  + ++  + R + +   +  +I+ R  RS+    
Sbjct: 148 LPDLQSRLSLALVFQLQQLSDEDKLRALQLRA-SRRGLNLPDDVGRFILTRGSRSMNALF 206

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +L+D++D  +L       R L    LKET
Sbjct: 207 ELLDQLDQASLQ----AQRKLTIPFLKET 231


>gi|71734306|ref|YP_275849.1| DNA replication initiation factor [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485896|ref|ZP_05639937.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289628380|ref|ZP_06461334.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648134|ref|ZP_06479477.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487973|ref|ZP_07006012.1| Chromosomal replication initiator protein dnaA [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|71554859|gb|AAZ34070.1| DnaA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298157524|gb|EFH98605.1| Chromosomal replication initiator protein dnaA [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320323391|gb|EFW79479.1| DNA replication initiation factor [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327588|gb|EFW83600.1| DNA replication initiation factor [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866057|gb|EGH00766.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330876426|gb|EGH10575.1| DNA replication initiation factor [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330889389|gb|EGH22050.1| DNA replication initiation factor [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986707|gb|EGH84810.1| DNA replication initiation factor [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 234

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            +ID    +   LE  +L+  +D Q           LFH+ N +      LL+ A   P 
Sbjct: 83  EVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFHLFNRLRDSGRRLLIAASKSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              V LPDL SRL  A V ++  L D+D L  + ++  + R + +  ++  +I+ R  RS
Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231


>gi|298505194|gb|ADI83917.1| DnaA regulatory inactivator Hda [Geobacter sulfurreducens KN400]
          Length = 242

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 91/245 (37%), Gaps = 39/245 (15%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKS------ 78
           QL F FP     S D+ ++ +  E A R        S    ++ L GPSGSGK+      
Sbjct: 2   QLVFDFPVTPKYSFDNFVICAGNETACRFARRLTDESGSENLLYLHGPSGSGKTHLLMAM 61

Query: 79  --CLAN-----------------IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             C A                  I+  +  +   S +A+           P LL D DL 
Sbjct: 62  GACFAGRVGLRAVPCISFKDVDEIYHGEYPAEEVSRLAERFRG------APALLVD-DLH 114

Query: 120 DFNDTQ-----LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
              D Q     L+ + N  +Q    + +T    P         L SRL    V K  + D
Sbjct: 115 LIPDQQSVRVELWQLFNDFYQAGRPIAITGLNPPNELPTLDGHLTSRLLWGLVAKTDISD 174

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           DD   +++ K+  DRQI +      Y++  + R +      +D +   A S    IT  L
Sbjct: 175 DDSRRRIMQKLADDRQIILPADAVDYLLVHVRRDVPSLVAALDAITRYAFSAKRKITMRL 234

Query: 235 AAEVL 239
           A E L
Sbjct: 235 AREAL 239


>gi|119472478|ref|ZP_01614577.1| putative regulatory factor involved in inactivation of DnaA
           [Alteromonadales bacterium TW-7]
 gi|119444915|gb|EAW26214.1| putative regulatory factor involved in inactivation of DnaA
           [Alteromonadales bacterium TW-7]
          Length = 241

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 16/190 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLED 115
           +   L G   SGKS L      K++    SN+  S+  ++         ++    + ++D
Sbjct: 53  QYTYLCGLGDSGKSHLLYATCIKAQERGLSNMLLSMREVINFGPMVLDGLEALDVLCIDD 112

Query: 116 IDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           + L+  ND     LF+  N  ++    L++TA   P    + LPDL SRL   T  +I  
Sbjct: 113 VHLVAGNDAWEKALFNFFNRFNEPGKMLVVTADLLPNMLNISLPDLESRLTWGTTFQIRS 172

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
             DD   + +VK    R + +  + A +++ R+ R +     ++DK+D+ +    M   R
Sbjct: 173 MSDDDKAQALVKRAHMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHAS----MAAQR 228

Query: 233 SLAAEVLKET 242
            L    +K T
Sbjct: 229 KLTIPFIKST 238


>gi|146283163|ref|YP_001173316.1| DNA replication initiation factor [Pseudomonas stutzeri A1501]
 gi|145571368|gb|ABP80474.1| DnaA family protein [Pseudomonas stutzeri A1501]
          Length = 223

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL--ANIWSDKSRSTR-----FSNIAKS 99
           +A+    RL      W   ++ L G  G G+S L  A     + R         + +A+ 
Sbjct: 17  AALGYVERLCSPAAGWSDELIYLWGQRGVGRSHLLQAACLRVEERGELAVYLPLAEVAEY 76

Query: 100 LDSIL--IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
             ++L  ++  + V L+D+D +  +   +  LFH+ N +      LL+ A   P    + 
Sbjct: 77  GPALLDNLEQSELVCLDDLDAVAGDAIWEEALFHLFNRLRDAGRRLLLAADASPRELAIK 136

Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           LPDL SRL  A V ++  L D+D L  + ++  + R + +   +  +I+ R  RS+    
Sbjct: 137 LPDLQSRLSLALVFQLQQLSDEDKLRALQLRA-SRRGLNLPDDVGRFILTRGSRSMNALF 195

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +L+D++D  +L       R L    LKET
Sbjct: 196 ELLDQLDQASLQ----AQRKLTIPFLKET 220


>gi|330811200|ref|YP_004355662.1| DNA replication initiation factor [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379308|gb|AEA70658.1| Putative DNA replication initiation factor [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 234

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            L+D    +L  LE  +L+  +D Q           LFH+ N +      LL+ A T P 
Sbjct: 83  ELLDRGVEILDNLEQYELVCLDDLQAVAGKADWEEALFHLFNRLRDSGRRLLIAASTSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              V L DL SRL  A + ++  L D+D L  + ++  + R + +  ++  +I+ R  RS
Sbjct: 143 ELPVKLADLKSRLTLALIFQMRPLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 202 MSALFELLERLDQASLQ----AQRKLTIPFLKET 231


>gi|330902626|gb|EGH33641.1| DNA replication initiation factor [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 207

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 1   AAVGYVERLCEADAGWAESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 55

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            +ID    +   LE  +L+  +D Q           LFH+ N +      LL+ A   P 
Sbjct: 56  EVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPR 115

Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              V LPDL SRL  A V ++  L D+D L  + ++  + R + +   +  +I+ R  RS
Sbjct: 116 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 174

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 175 MSALFELLERLDQASLQE----KRKLTIPFLKET 204


>gi|167032278|ref|YP_001667509.1| DNA replication initiation factor [Pseudomonas putida GB-1]
 gi|166858766|gb|ABY97173.1| DnaA regulatory inactivator Hda [Pseudomonas putida GB-1]
          Length = 235

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDS 102
           +A+    RL ++   W   ++ L G  G G+S L     + +  +     +  +A+ LD 
Sbjct: 29  AALGYVERLCEADAGWTESLIYLWGKQGVGRSHLLQAATHRFQQRGEPAVYLPLAQLLDR 88

Query: 103 IL-----IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            +     +   + V ++D+ ++      +  +FH+ N +      LL+ A   P    V 
Sbjct: 89  GVGLLDYLAQYELVCIDDLHVIAGKADWEEAMFHLFNRLRDSGRRLLLAASASPRELPVK 148

Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           LPDL SRL  A V ++  L D+D L  + ++  + R + +  ++  +I+ R  RS+    
Sbjct: 149 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGARSMSALF 207

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            L++++D  +L       R L    LKET
Sbjct: 208 DLLERLDQASLQ----AQRKLTIPFLKET 232


>gi|114332207|ref|YP_748429.1| hypothetical protein Neut_2247 [Nitrosomonas eutropha C91]
 gi|114309221|gb|ABI60464.1| regulatory inactivation of DnaA Hda protein [Nitrosomonas eutropha
           C91]
          Length = 221

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 13/184 (7%)

Query: 65  RVVILVGPSGSGKSCL----ANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDL 118
           R   L G +GSGKS L     NI+ ++ R+T +   N A  +D  L  T   + +++I+ 
Sbjct: 42  RFYYLWGNTGSGKSHLLQAVTNIFMEQQRNTHYIDCNQADEIDFNL--TADCIAVDNIEQ 99

Query: 119 LD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SLPDDD 176
           LD     +LF++ N I +    + +   T P +     PDL +RL    V ++  L D+ 
Sbjct: 100 LDDAEQIRLFNLYNQIRESKYGIFLAGGTRPPAQLGLRPDLTTRLGWGLVYQVHELTDEK 159

Query: 177 FLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
            +E  +++ +A R  F +   +  Y+++  +R L    + V  +D L+L+R   +T  L 
Sbjct: 160 KIE--VMQDYAIRCGFELPLDVCNYLLKHEQRDLSSLIRQVSALDQLSLTRQRPVTLPLL 217

Query: 236 AEVL 239
            E+L
Sbjct: 218 RELL 221


>gi|49081928|gb|AAT50364.1| PA0947 [synthetic construct]
          Length = 235

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 32/216 (14%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106
           +A+    RL ++   W   ++ L G  G G+S L      ++   RF    +   +I + 
Sbjct: 28  AALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLL-----QAACLRFEQFEER--TIYLP 80

Query: 107 TRKPVL--------LEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTF 147
              PV         LE  +L+  +D             LFH+ N +      LL+ A   
Sbjct: 81  MADPVQYGPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFHLFNRLRDTGRRLLLAASKS 140

Query: 148 PVSWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
           P    V LPDL SRL  A + ++  L D+D L  + ++  + R + +  ++  +I+ R  
Sbjct: 141 PRELQVKLPDLKSRLTMALIFQLHGLSDEDKLRALQLRA-SRRGLHLTDEVGRFILNRGS 199

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           RS+     L++++D  +L       R L    LKET
Sbjct: 200 RSMNSLFDLLEQLDRASLQ----AQRKLTIPFLKET 231


>gi|70731783|ref|YP_261525.1| DNA replication initiation factor [Pseudomonas fluorescens Pf-5]
 gi|68346082|gb|AAY93688.1| DnaA family protein [Pseudomonas fluorescens Pf-5]
          Length = 234

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            L+D    +L  LE  +L+  +D Q           LFH+ N +      LL+ A T P 
Sbjct: 83  ELLDRGIEILDNLEQYELVCLDDLQAVAGKADWEEALFHLFNRLRDSGRRLLIAASTSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              V L DL SRL  A + ++  L D+D L  + ++  + R + +  ++  +I+ R  RS
Sbjct: 143 ELPVKLADLKSRLTLALIFQMRPLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 202 MSALFELLERLDQASLQ----AQRKLTIPFLKET 231


>gi|262368617|ref|ZP_06061946.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262316295|gb|EEY97333.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 234

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 17/147 (11%)

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQ---- 125
           G +GSGKS L +   D       S I  SL  +L   T     LE  DL+  +D +    
Sbjct: 46  GGAGSGKSHLLSAICDSYLDVGKSAIQVSLLELLDAPTEAITSLERFDLVALDDIEAISG 105

Query: 126 -------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
                  +FH+IN  ++    L+ ++R  P+   + LPDL SRL  A  VK+  P+    
Sbjct: 106 VPHWQKAVFHLINYNNEEGGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PNGSLY 163

Query: 179 ---EKVIVKMFADRQIFIDKKLAAYIV 202
                +++ + + R I ID+++  Y++
Sbjct: 164 ADRSTLVMSVLSRRGIHIDQQIIDYLL 190


>gi|66046915|ref|YP_236756.1| DNA replication initiation factor [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257622|gb|AAY38718.1| DnaA family protein [Pseudomonas syringae pv. syringae B728a]
          Length = 261

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 55  AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 109

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            +ID    +   LE  +L+  +D Q           LFH+ N +      LL+ A   P 
Sbjct: 110 EVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPR 169

Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              V LPDL SRL  A V ++  L D+D L  + ++  + R + +   +  +I+ R  RS
Sbjct: 170 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 228

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 229 MSALFELLERLDQASLQE----KRKLTIPFLKET 258


>gi|58580923|ref|YP_199939.1| hypothetical protein XOO1300 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622858|ref|YP_450230.1| hypothetical protein XOO_1201 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188578097|ref|YP_001915026.1| hypothetical protein PXO_02244 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58425517|gb|AAW74554.1| replication related protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366798|dbj|BAE67956.1| replication related protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188522549|gb|ACD60494.1| replication related protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 233

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 16/191 (8%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTRFSN------IAKSLDSIL--IDTRKPVLLEDID 117
           + L GP+GSGK+ LA ++ +   ++ R S        A  L   L  ++ R  V L+ ++
Sbjct: 44  LYLSGPAGSGKTHLALSLCAAAEQAGRMSAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103

Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173
            +     ++  LF   N       +LL TAR  P    + LPDL SRL  +  ++I LP 
Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPNGLALVLPDLRSRL--SQCIRIGLPV 161

Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            DD     V+      R + +D+    +++   ER L     L+D++D  +L+    IT 
Sbjct: 162 LDDAARAAVLRDRAQRRGLAMDEAAIDWLLTHGERELARLVALLDRLDRESLAAKRRITV 221

Query: 233 SLAAEVLKETQ 243
                VL++ +
Sbjct: 222 PFLRRVLEDRR 232


>gi|26988400|ref|NP_743825.1| DNA replication initiation factor [Pseudomonas putida KT2440]
 gi|148549256|ref|YP_001269358.1| DNA replication initiation factor [Pseudomonas putida F1]
 gi|24983155|gb|AAN67289.1|AE016355_7 DnaA family protein [Pseudomonas putida KT2440]
 gi|148513314|gb|ABQ80174.1| regulatory inactivation of DnaA Hda protein [Pseudomonas putida F1]
 gi|313500166|gb|ADR61532.1| DNA replication initiation factor [Pseudomonas putida BIRD-1]
          Length = 235

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDS 102
           +A+    RL ++   W   ++ L G  G G+S L     + +  +     +  +A+ LD 
Sbjct: 29  AALGYVERLCEADAGWTESLIYLWGKQGVGRSHLLQAATHRFQQRGEPAVYLPLAQLLDR 88

Query: 103 IL-----IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            +     +   + V ++D+ ++      +  +FH+ N +      LL+ A   P    + 
Sbjct: 89  GVELLDYLAQYELVCIDDLHVIAGKADWEEAMFHLFNRLRDSGRRLLLAASASPRELPIK 148

Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           LPDL SRL  A V ++  L D+D L  + ++  + R + +  ++  +I+ R  RS+    
Sbjct: 149 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGARSMSALF 207

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            L++++D  +L       R L    LKET
Sbjct: 208 DLLERLDQASLQ----AQRKLTIPFLKET 232


>gi|166711228|ref|ZP_02242435.1| hypothetical protein Xoryp_07090 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 233

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 16/191 (8%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTRFSN------IAKSLDSIL--IDTRKPVLLEDID 117
           + L GP+GSGK+ LA ++ +   ++ R S        A  L   L  ++ R  V L+ ++
Sbjct: 44  LYLSGPAGSGKTHLALSLCAAAEQAGRMSAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103

Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173
            +     ++  LF   N       +LL TAR  P    + LPDL SRL  +  ++I LP 
Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCIRIGLPV 161

Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            DD     V+      R + +D+    +++   ER L     L+D++D  +L+    IT 
Sbjct: 162 LDDAARAAVLRDRAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRITV 221

Query: 233 SLAAEVLKETQ 243
                VL++ +
Sbjct: 222 PFLRRVLEDRR 232


>gi|28868909|ref|NP_791528.1| DnaA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971898|ref|ZP_03399998.1| DnaA family protein [Pseudomonas syringae pv. tomato T1]
 gi|301384468|ref|ZP_07232886.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062183|ref|ZP_07253724.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato
           K40]
 gi|302131786|ref|ZP_07257776.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|302187852|ref|ZP_07264525.1| DNA replication initiation factor [Pseudomonas syringae pv.
           syringae 642]
 gi|28852148|gb|AAO55223.1| DnaA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213923323|gb|EEB56918.1| DnaA family protein [Pseudomonas syringae pv. tomato T1]
 gi|330877082|gb|EGH11231.1| DNA replication initiation factor [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330966590|gb|EGH66850.1| DNA replication initiation factor [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016800|gb|EGH96856.1| DNA replication initiation factor [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 234

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            +ID    +   LE  +L+  +D Q           LFH+ N +      LL+ A   P 
Sbjct: 83  EVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFHLFNRLRDSGRRLLIAASKSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              V LPDL SRL  A V ++  L D+D L  + ++  + R + +   +  +I+ R  RS
Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231


>gi|330953483|gb|EGH53743.1| DNA replication initiation factor [Pseudomonas syringae Cit 7]
 gi|330972385|gb|EGH72451.1| DNA replication initiation factor [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330980218|gb|EGH78371.1| DNA replication initiation factor [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 234

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            +ID    +   LE  +L+  +D Q           LFH+ N +      LL+ A   P 
Sbjct: 83  EVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              V LPDL SRL  A V ++  L D+D L  + ++  + R + +   +  +I+ R  RS
Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231


>gi|89095234|ref|ZP_01168156.1| DnaA family protein [Oceanospirillum sp. MED92]
 gi|89080488|gb|EAR59738.1| DnaA family protein [Oceanospirillum sp. MED92]
          Length = 234

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 55/116 (47%)

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
           +  LFH  N I +  ++L++ + + P   G+ LPDL SRL    V ++    DD   K I
Sbjct: 116 EVALFHFFNRIREQGNTLVIASTSAPRYLGISLPDLASRLSWGMVFQVQPLSDDTKLKAI 175

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
               + R +    ++A +++    R++     L+D +D  +LS    +T     EV
Sbjct: 176 QMRASARGLEFSDEVARFLLHHASRNMNDLTSLLDTLDQASLSAKRKVTIPFIKEV 231


>gi|330960588|gb|EGH60848.1| DNA replication initiation factor [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 234

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQMGEPAVYLPLA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            +ID    +   LE  +L+  +D Q           LFH+ N +      LL+ A   P 
Sbjct: 83  EVIDEGIELFDHLEQYELVCLDDLQAVVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              V LPDL SRL  A V ++  L D+D L  + ++  + R + +   +  +I+ R  RS
Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231


>gi|237798977|ref|ZP_04587438.1| DNA replication initiation factor [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021831|gb|EGI01888.1| DNA replication initiation factor [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 234

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQMGEPAVYLPMA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            +ID    +   LE  +L+  +D Q           LFH+ N +      LL+ A   P 
Sbjct: 83  EVIDEGIELFDHLEQYELVCLDDLQAVVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              V LPDL SRL  A V ++  L D+D L  + ++  + R + +   +  +I+ R  RS
Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +L++++D  +L       R L    LKET
Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231


>gi|56460576|ref|YP_155857.1| DNA replication initiation ATPase [Idiomarina loihiensis L2TR]
 gi|56179586|gb|AAV82308.1| ATPase involved in DNA replication initiation [Idiomarina
           loihiensis L2TR]
          Length = 237

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 15/186 (8%)

Query: 69  LVGPSGSGKSCLAN-IWSDKSRSTRFS-----NIAKSLDSIL---IDTRKPVLLEDIDLL 119
           L G SG GKS L + + +      R +      +AK+  S +   ID    + L+DID +
Sbjct: 52  LSGASGVGKSHLMHSVIASAGSQYRIAYLPLRELAKADASAVLQGIDQADLICLDDIDTV 111

Query: 120 DFNDT---QLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPD 174
                   +LF +IN +   +S+ L+MTA+       V LPDL SR + AT  ++  L D
Sbjct: 112 TLEQNWSFELFSLINRVTDNESTRLVMTAKQSAAQTKVLLPDLQSRFQWATGFQVQPLND 171

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           ++ +  +I++    R + +   +AA++ QR+ RS+    K ++++D  +++    +T   
Sbjct: 172 EEKINALILRA-QWRGLELPNDVAAFMTQRLGRSMRDLMKALNELDKASITYQRRLTIPF 230

Query: 235 AAEVLK 240
             +VL+
Sbjct: 231 VKQVLE 236


>gi|225077364|ref|ZP_03720563.1| hypothetical protein NEIFLAOT_02424 [Neisseria flavescens
           NRL30031/H210]
 gi|319638485|ref|ZP_07993247.1| DnaA-like protein [Neisseria mucosa C102]
 gi|224951292|gb|EEG32501.1| hypothetical protein NEIFLAOT_02424 [Neisseria flavescens
           NRL30031/H210]
 gi|317400234|gb|EFV80893.1| DnaA-like protein [Neisseria mucosa C102]
          Length = 222

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 9/187 (4%)

Query: 64  SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKS-LDSILIDTRKPVLLEDIDL 118
            + + + G  G+GKS L   W     D  R+  + + A + L    +D  + + ++ I+ 
Sbjct: 36  GQFIYVWGEEGAGKSHLLQAWVAQALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEK 94

Query: 119 LDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           L+ N+ Q  LF I N         L+ +  +     V   DL +R+    V ++    D 
Sbjct: 95  LN-NEEQALLFAIFNRFRNSGKGFLLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDR 153

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
                +V M A RQ+ ID ++  Y++    R +    +++D +DN A+  G  IT  L  
Sbjct: 154 EKIDALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLR 213

Query: 237 EVLKETQ 243
           ++LK+ +
Sbjct: 214 QLLKQQE 220


>gi|170720412|ref|YP_001748100.1| DNA replication initiation factor [Pseudomonas putida W619]
 gi|169758415|gb|ACA71731.1| DnaA regulatory inactivator Hda [Pseudomonas putida W619]
          Length = 235

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 18/209 (8%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDS 102
           +A+    RL ++   W   ++ L G  G G+S L     + +  +  +  +  +A+ L+ 
Sbjct: 29  AALGYVERLCEADAGWTESLIYLWGKQGVGRSHLLQAATHRFQQRGEAAVYLPLAQLLER 88

Query: 103 IL-----IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            +     +   + V ++D+ ++      +  +FH+ N +      LL+ A   P    + 
Sbjct: 89  GIGLLDYLAQYELVCIDDLHVIAGKAEWEEAMFHLFNRLRDSGRRLLLAASASPRELPIR 148

Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           LPDL SRL  A V ++  L D+D L  + ++  + R + +  ++  +I+ R  RS+    
Sbjct: 149 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRSMSALF 207

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            L++++D  +L       R L    LKET
Sbjct: 208 DLLERLDQASLQ----AQRKLTIPFLKET 232


>gi|261380274|ref|ZP_05984847.1| DnaA regulatory inactivator Hda [Neisseria subflava NJ9703]
 gi|284797135|gb|EFC52482.1| DnaA regulatory inactivator Hda [Neisseria subflava NJ9703]
          Length = 222

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 9/187 (4%)

Query: 64  SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKS-LDSILIDTRKPVLLEDIDL 118
            + + + G  G+GKS L   W     D  R+  + + A + L    +D  + + ++ I+ 
Sbjct: 36  GQCIYVWGEEGAGKSHLLQAWVAQALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEK 94

Query: 119 LDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           L+ N+ Q  LF I N         L+ +  +     V   DL +R+    V ++    D 
Sbjct: 95  LN-NEEQALLFAIFNRFRNSGKGFLLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDR 153

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
                +V M A RQ+ ID ++  Y++    R +    +++D +DN A+  G  IT  L  
Sbjct: 154 EKIDALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLR 213

Query: 237 EVLKETQ 243
           ++LK+ +
Sbjct: 214 QLLKQQE 220


>gi|241759926|ref|ZP_04758026.1| DnaA regulatory inactivator Hda [Neisseria flavescens SK114]
 gi|241319934|gb|EER56330.1| DnaA regulatory inactivator Hda [Neisseria flavescens SK114]
          Length = 222

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 9/187 (4%)

Query: 64  SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKS-LDSILIDTRKPVLLEDIDL 118
            + + + G  G+GKS L   W     D  R+  + + A + L    +D  + + ++ I+ 
Sbjct: 36  GQFIYVWGEEGAGKSHLLRAWVAQALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEK 94

Query: 119 LDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           L+ N+ Q  LF I N         L+ +  +     V   DL +R+    V ++    D 
Sbjct: 95  LN-NEEQALLFAIFNRFRNSGKGFLLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDR 153

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
                +V M A RQ+ ID ++  Y++    R +    +++D +DN A+  G  IT  L  
Sbjct: 154 EKIDALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLR 213

Query: 237 EVLKETQ 243
           ++LK+ +
Sbjct: 214 QLLKQQE 220


>gi|254786961|ref|YP_003074390.1| DnaA regulatory inactivator Hda [Teredinibacter turnerae T7901]
 gi|237687481|gb|ACR14745.1| DnaA regulatory inactivator Hda [Teredinibacter turnerae T7901]
          Length = 236

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 26/218 (11%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRVVILV-GPSGSGKSCL----ANIWSDKSRSTRFSNIA 97
           L V S   QAV  ++   S  S     V G  G+G S L     +  SD  RS ++  +A
Sbjct: 24  LAVGSGNRQAVDALEKVASGASLENTFVWGAHGTGLSHLLQAVCHQASDCGRSLQYFPMA 83

Query: 98  KSLDSILIDTRKPVLL----EDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLM 142
                  +    P  L    ED+DL+  +  +           LFH+ N +     +L+ 
Sbjct: 84  D------VRGYAPAALCEGLEDLDLVCLDGIEHICGSREWEQSLFHLFNRMRDAGKTLVF 137

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           ++   P +  + LPDL SRL +  +  +    DD  +  + +   +R   + +++A++I+
Sbjct: 138 SSHVSPAALPIVLPDLKSRLMSCIIYHLESLTDDAKKAALQQRAHERGFDMPEEVASFIL 197

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            R  R      +L+DK+D+ +L     +T      VL+
Sbjct: 198 NRASRDTAELFELLDKLDDASLQAQRKLTIPFVKSVLE 235


>gi|255319431|ref|ZP_05360646.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SK82]
 gi|255303499|gb|EET82701.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SK82]
          Length = 239

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 22/147 (14%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125
           + G +GSGKS L +   D       S I  SL  +L    + +  LE  DL+  +D +  
Sbjct: 48  IYGAAGSGKSHLLSAICDSYMEVGKSAIKVSLLELLDAPIEAITSLEKYDLVALDDIEAI 107

Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                    +FH+IN  ++    L+ ++R  P+   + LPDL SRL  A  VK+  P+  
Sbjct: 108 SGVPHWQRAVFHLINYNNEEGGQLIFSSRFAPMELKLELPDLQSRLTQAVSVKV--PNG- 164

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQ 203
                   ++ADRQ  +   LA   VQ
Sbjct: 165 -------SLYADRQALVHSVLARRGVQ 184


>gi|325274455|ref|ZP_08140535.1| DNA replication initiation factor [Pseudomonas sp. TJI-51]
 gi|324100409|gb|EGB98175.1| DNA replication initiation factor [Pseudomonas sp. TJI-51]
          Length = 235

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDS 102
           +A+    RL ++   W   ++ L G  G G+S L     + +  +     +  +A+ L+ 
Sbjct: 29  AALGYVERLCEADAGWTESLIYLWGKQGVGRSHLLQAATHRFQQRGEPAVYLPLAQLLER 88

Query: 103 IL-----IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            +     +   + V ++D+ ++      +  +FH+ N +      LL+ A   P    V 
Sbjct: 89  GVGLLDYLAQYELVCIDDLHVIAGKPDWEEAMFHLFNRLRDSGRRLLLAASASPRELPVK 148

Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           LPDL SRL  A V ++  L D+D L  + ++  + R + +  ++  +I+ R  RS+    
Sbjct: 149 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGARSMSALF 207

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            L++++D  +L       R L    LKET
Sbjct: 208 DLLERLDQASLQ----AQRKLTIPFLKET 232


>gi|262379394|ref|ZP_06072550.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens
           SH164]
 gi|262298851|gb|EEY86764.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens
           SH164]
          Length = 235

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 22/147 (14%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125
           + G +GSGKS L +   D       S I  SL  +L    + +  LE  DL+  +D +  
Sbjct: 44  IYGAAGSGKSHLLSAICDSYMEVGKSAIKVSLLELLDAPIEAITSLEKYDLVALDDIEAI 103

Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                    +FH+IN  ++    L+ ++R  P+   + LPDL SRL  A  VK+  P+  
Sbjct: 104 SGVPHWQRAVFHLINYNNEEGGQLIFSSRFAPMELKLELPDLQSRLTQAVSVKV--PNG- 160

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQ 203
                   ++ADRQ  +   LA   VQ
Sbjct: 161 -------SLYADRQALVHSVLARRGVQ 180


>gi|21243683|ref|NP_643265.1| hypothetical protein XAC2956 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109263|gb|AAM37801.1| replication related protein [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 233

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 16/189 (8%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117
           + L GP+G+GK+ LA ++ +   ++ R          A  L   L  ++ R  V L+ ++
Sbjct: 44  LYLSGPAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103

Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173
            +     ++  LF   N       +LL TAR  P    + LPDL SRL  A  ++I LP 
Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--AQCIRIGLPV 161

Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            DD     V+      R + +D+    +++   ER L     L+D++D  +L+    IT 
Sbjct: 162 LDDAARAAVLRDRAQRRGLALDEAAIDWLLTHSERELAALVALLDRLDRESLAAKRRITV 221

Query: 233 SLAAEVLKE 241
                VL++
Sbjct: 222 PFLRRVLED 230


>gi|254513812|ref|ZP_05125873.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR5-3]
 gi|219676055|gb|EED32420.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR5-3]
          Length = 235

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN 122
           L G +G GKS L       +    +  +A  L+S        +++   + L+D+D++   
Sbjct: 54  LHGAAGEGKSHLLQALCHATDGAVYLPLAVLLESPPSDLFQDLESSSLLALDDLDVIAGR 113

Query: 123 ---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
              +  LFH+IN        L M AR      G+ L DL SRL       +S  DD   +
Sbjct: 114 REWEEALFHLINRARAAQCPLWMAARRPANDLGLQLADLSSRLAGGVTWALSAADDSD-K 172

Query: 180 KVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           + I++  A R+ + + + +A Y+  R  R+L    + +D++D  +L     +T  L  EV
Sbjct: 173 QAILQFRARRKGLVLSESVAHYVCSRESRALADLMETLDRLDRASLQLQRPLTVPLIREV 232

Query: 239 L 239
           +
Sbjct: 233 M 233


>gi|119477092|ref|ZP_01617328.1| hypothetical protein GP2143_02179 [marine gamma proteobacterium
           HTCC2143]
 gi|119449455|gb|EAW30693.1| hypothetical protein GP2143_02179 [marine gamma proteobacterium
           HTCC2143]
          Length = 252

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 19/192 (9%)

Query: 65  RVVILVGPSGSGKSCL---ANIWSDKSRSTR----FSNIAKSLDSILIDT---RKPVLLE 114
           R V L G  GSG+S L   A   +DK+ S       S + +     L D    +  V L+
Sbjct: 63  RYVYLFGREGSGRSHLLQAACHHADKNGSNAIYLPLSELGEYPPEELFDGLEYQSLVCLD 122

Query: 115 DIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           D+D +        QLFH+ N +      LL++AR       + L DL SRL   TV ++ 
Sbjct: 123 DVDAVIDKGLWQRQLFHLFNRLSDAQIPLLISARCAVRDLNIELQDLASRLSWGTVFQLH 182

Query: 172 LPDDDFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             +DD      +K+ A+R+ + +  ++A YI  R  R       ++D +D+ +L+     
Sbjct: 183 NLNDD-QRTATIKLRAERRGLLMGDEVAQYIYNRCRRDTQALLSVLDTLDSASLT----Y 237

Query: 231 TRSLAAEVLKET 242
            R L    +K+T
Sbjct: 238 QRRLTVPFVKKT 249


>gi|50085702|ref|YP_047212.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter sp. ADP1]
 gi|49531678|emb|CAG69390.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter sp. ADP1]
          Length = 235

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 22/137 (16%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125
           + G +GSGKS L +   D       S I  SL  +L    + +  LE  DL+  +D +  
Sbjct: 44  IYGGAGSGKSHLLSAICDSYLEIGKSAIKVSLLELLDAPIEAITSLERYDLVALDDIEAI 103

Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                    +FH+IN  ++    L+ ++R  P+   + LPDL SRL  A  VK  LP+  
Sbjct: 104 SGVPHWQKAVFHLINYNNEVGGQLVFSSRVAPIELRLELPDLQSRLTQAVSVK--LPNG- 160

Query: 177 FLEKVIVKMFADRQIFI 193
                   +FADRQ  I
Sbjct: 161 -------SLFADRQALI 170


>gi|189462574|ref|ZP_03011359.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136]
 gi|189430735|gb|EDU99719.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136]
          Length = 469

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 36/214 (16%)

Query: 63  PSRV---VILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94
           P+R    + L GPSG GK+ L N                          ++D  R+  F+
Sbjct: 161 PARTFNPLFLYGPSGVGKTHLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 220

Query: 95  NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     +++D ++ID      +++   +       FHI N +HQ    L++T+   PV  
Sbjct: 221 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 275

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L +R K   V ++  PD +  + ++        + I + +  YI + +  S+  
Sbjct: 276 QGMEDRLLTRFKWGLVAELEKPDIELRKNILRNKIRRDGLVIPESVICYIAENVNESVRE 335

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            E +V+ +   ++     I   LA  ++++  +C
Sbjct: 336 LEGIVNSLLVYSIQLKREINLDLAQRIVRKAVRC 369


>gi|152979518|ref|YP_001345147.1| chromosomal replication initiator DnaA [Actinobacillus succinogenes
           130Z]
 gi|150841241|gb|ABR75212.1| Chromosomal replication initiator DnaA [Actinobacillus succinogenes
           130Z]
          Length = 230

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 91/182 (50%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCL----ANIWSDKSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  G GKS L     + +  ++R+  +  +AKS+    ++L  ++ ++ V L+D+  +  
Sbjct: 47  GEEGCGKSHLLKAATHQFFGENRTALYVPLAKSVYFSPAVLDNLEQQELVCLDDLQCVIG 106

Query: 122 ND---TQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           N+     +F + N I ++  +LL+ +A   P S  V LPDL SRL    + ++   DD  
Sbjct: 107 NEEWEVAVFDLFNRIKEHGKTLLIVSANQSPNSLPVQLPDLASRLSWGEIYQLHALDDQQ 166

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
               + +    R I +  + A+++++R++R++     ++D++D  +L     +T     E
Sbjct: 167 KITALQQNARQRGIELPDETASFLIKRLDRNMHNLFAVLDQLDKASLQAQRKLTIPFVKE 226

Query: 238 VL 239
            L
Sbjct: 227 TL 228


>gi|298368961|ref|ZP_06980279.1| DnaA regulatory inactivator Hda [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282964|gb|EFI24451.1| DnaA regulatory inactivator Hda [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 225

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 19/192 (9%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF-- 121
            + + + G  G+GKS L   W  ++       +    +++ ID     L E +   D+  
Sbjct: 39  GQFIYVWGEQGAGKSHLLQAWVAQA-------LGMGKNAVYIDAATSPLTESVLEADYLA 91

Query: 122 --------NDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
                   N+ Q  LF + N         L+ +        V   DL +R+    V ++ 
Sbjct: 92  IDQIEKLGNEEQALLFAVFNRFRNSGKGFLLLSSEHTPQQLVIREDLRTRMAYCLVYEVK 151

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
              D      +V M A RQ+ ID ++  Y++    R +    +++D +DN A++ G  IT
Sbjct: 152 PLTDQEKIDALVSMAAARQVTIDLEIFEYLLNHWRRDMDSLMQMLDTLDNYAVTMGKRIT 211

Query: 232 RSLAAEVLKETQ 243
             L  ++LK+ +
Sbjct: 212 LPLLRQLLKQQE 223


>gi|77457863|ref|YP_347368.1| DNA replication initiation factor [Pseudomonas fluorescens Pf0-1]
 gi|77381866|gb|ABA73379.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 234

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGKHGVGRTHLL-----QAACLRFEQMGEPAVYLPLA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            L+D    +L  LE  +L+  +D Q           +FH+ N +      LL+ A T P 
Sbjct: 83  ELMDRGIEILDNLEQYELVCLDDLQVIAGKADWEEAMFHLFNRLRDSGRRLLIAASTSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              + L DL SRL  A + ++  L D+D L  + ++  + R + +  ++  +I+ R  RS
Sbjct: 143 ELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +     L++++D  +L       R L    LKET
Sbjct: 202 MSALFDLLEQLDQASLQ----AQRKLTIPFLKET 231


>gi|114562926|ref|YP_750439.1| DNA replication initiation factor [Shewanella frigidimarina NCIMB
           400]
 gi|114334219|gb|ABI71601.1| regulatory inactivation of DnaA Hda protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 236

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 92/189 (48%), Gaps = 17/189 (8%)

Query: 67  VILVGPSGSGKSCLAN----IWSDKSRSTRFS--NIAKSLDSIL---IDTRKPVLLEDID 117
           + + GP  SG++ L +    + +D  R T +    I  S+   L   +++ + + ++DI+
Sbjct: 49  LYVYGPEKSGRTHLMHAACALANDLERRTLYIPLGIHASISPALFEGLESLELICIDDIE 108

Query: 118 LLDFN---DTQLFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            +  +   +  +FH+ N I  Q D  L++  +  P   G  LPDL SR++   + ++   
Sbjct: 109 AIAGHPVWEEAIFHLYNRIAEQQDCRLIVNGKASPSETGFLLPDLVSRMQWGLIYQLQPM 168

Query: 174 DDDFLEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            DD  EK++   +  A R + +  ++  +++ RM R L     ++DK+D  ++     +T
Sbjct: 169 ADD--EKLVALQRRAAMRGLQLSDEVGRFLLTRMARDLRTLFDVLDKLDKASMVHQRKLT 226

Query: 232 RSLAAEVLK 240
                E+L+
Sbjct: 227 IPFIKEMLR 235


>gi|91781892|ref|YP_557098.1| hypothetical protein Bxe_A3953 [Burkholderia xenovorans LB400]
 gi|91685846|gb|ABE29046.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 256

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 65  RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121
           R   + G SGSG++ L  A +        RF+    SL +   D R  +  ++D D L  
Sbjct: 47  RTFYIWGESGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSA 106

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLE 179
                +F++ N +  + +S L+ A   P        DL +RL    V  ++ LPD+D  +
Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDED--K 164

Query: 180 KVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
             ++K  A +R I +   + AY++    R +     L+D +D  +L +   +T  L
Sbjct: 165 AAVLKHAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220


>gi|189425233|ref|YP_001952410.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ]
 gi|189421492|gb|ACD95890.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ]
          Length = 229

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 14/216 (6%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
           F +F  C G S       +A+E + R+ D  P+ P +++ L GP+GSGK+ L +    + 
Sbjct: 16  FENFISCAGNS-------TALEFSRRITD--PAEPEKLLYLYGPAGSGKTHLLHAIGRQL 66

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND-----TQLFHIINSIHQYDSSLLMT 143
              ++  ++    ++ + T    LL   DL    D       L+   N  +    +L + 
Sbjct: 67  AGEQYQVLSCRNLTVPVATNPGSLLLVDDLDQLPDRPELRNALWEAFNQQYSSGHTLALA 126

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
            R  P         L SRL    V ++ + DD   + +I K+  DRQI +  ++A +++ 
Sbjct: 127 GRFAPKELPTIDDHLISRLLWGLVARLDVSDDRSRQMLIAKLAQDRQIILPDEVAGWLLT 186

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            + R +       D +   AL R   IT  LA E++
Sbjct: 187 VLPRDVGSLVSACDALYRAALQRKCRITLRLARELV 222


>gi|78221967|ref|YP_383714.1| regulatory inactivation of DnaA Hda protein [Geobacter
           metallireducens GS-15]
 gi|78193222|gb|ABB30989.1| regulatory inactivation of DnaA Hda protein [Geobacter
           metallireducens GS-15]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 27/239 (11%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKS-CLANI 83
           QL F FP     S D+ ++ S  E A R +           ++ L GPSGSGK+  L  I
Sbjct: 2   QLVFDFPVNPKYSLDNFVICSGNETAYRFVRRLTDDEGAENLLYLHGPSGSGKTHLLMAI 61

Query: 84  WSDKSRSTRFSNIA----KSLDSILIDT--------------RKPVLLEDIDLLDFNDTQ 125
            +  S     S++     K +D +                    P LL D DL    D Q
Sbjct: 62  GAHFSARAGLSSVPCISFKDVDEVYGGEYPAEAVSKLAERFRNAPALLVD-DLHLIPDQQ 120

Query: 126 -----LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                L+ + N  +Q    + +T    P         L SRL    V ++ + DDD    
Sbjct: 121 AVRVELWQLFNDFYQAGRPIAITGLYPPKELPTIDDHLISRLLWGLVARVDISDDDSRRL 180

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           ++ K+  DRQI +   +  Y++  + R +    + +D +   AL+    ++  LA E L
Sbjct: 181 IMKKLADDRQIVLPADVIDYLLLHVRRDVPSLIEALDAISRYALAAKRKVSVRLAREAL 239


>gi|126642638|ref|YP_001085622.1| putative chromosomal replication initiator DnaA-type [Acinetobacter
           baumannii ATCC 17978]
          Length = 205

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 20/149 (13%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125
           + G +G+GKS L +   D       S I  SL  +L    + +  LE  DL+  +D +  
Sbjct: 17  IYGGAGTGKSHLLSAICDSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDDIESI 76

Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI---SLP 173
                    +FH++N+   ++  L+ ++R  P+   + LPDL SRL  A  VK+   SL 
Sbjct: 77  SGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKVPSGSLY 133

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
            D +   ++  + A R I  D+++  Y++
Sbjct: 134 ADRY--ALVTSVMARRGIHFDQQIVDYLL 160


>gi|294626251|ref|ZP_06704854.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599397|gb|EFF43531.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 233

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 16/189 (8%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117
           + L GP+G+GK+ LA ++ +   ++ R          A  L   L  ++ R  V L+ ++
Sbjct: 44  LYLSGPAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103

Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173
            +     ++  LF   N       +LL TAR  P    + LPDL SRL  +  ++I LP 
Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCIRIGLPV 161

Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            DD     V+      R + +D+    +++   ER L     L+D++D  +L+    IT 
Sbjct: 162 LDDAARAAVLRDRAQRRGLALDEAAIDWLLTHRERELAALVDLLDRLDRESLAAKRRITV 221

Query: 233 SLAAEVLKE 241
                VL++
Sbjct: 222 PFLRRVLED 230


>gi|294664601|ref|ZP_06729941.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605629|gb|EFF48940.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 233

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 16/189 (8%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117
           + L GP+G+GK+ LA ++ +   ++ R          A  L   L  ++ R  V L+ ++
Sbjct: 44  LYLSGPAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103

Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173
            +     ++  LF   N       +LL TAR  P    + LPDL SRL  +  ++I LP 
Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCIRIGLPV 161

Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            DD     V+      R + +D+    +++   ER L     L+D++D  +L+    IT 
Sbjct: 162 LDDAARAAVLRDRAQRRGLALDEAAIDWLLTHSERELAALVALLDRLDRESLAAKRRITV 221

Query: 233 SLAAEVLKE 241
                VL++
Sbjct: 222 PFLRRVLED 230


>gi|296161794|ref|ZP_06844596.1| DnaA regulatory inactivator Hda [Burkholderia sp. Ch1-1]
 gi|295887958|gb|EFG67774.1| DnaA regulatory inactivator Hda [Burkholderia sp. Ch1-1]
          Length = 256

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 65  RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121
           R   + G SGSG++ L  A +        RF+    SL +   D R  +  ++D D L  
Sbjct: 47  RTFYIWGESGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSA 106

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLE 179
                +F++ N +  + +S L+ A   P        DL +RL    V  ++ LPD+D  +
Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLTPLPDED--K 164

Query: 180 KVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
             ++K  A +R I +   + AY++    R +     L+D +D  +L +   +T  L
Sbjct: 165 AAVLKHAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220


>gi|169795049|ref|YP_001712842.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii AYE]
 gi|184159167|ref|YP_001847506.1| DNA replication initiation ATPase [Acinetobacter baumannii ACICU]
 gi|213158289|ref|YP_002320340.1| DnaA family protein [Acinetobacter baumannii AB0057]
 gi|215482598|ref|YP_002324790.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii
           AB307-0294]
 gi|260556532|ref|ZP_05828750.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii ATCC
           19606]
 gi|301347427|ref|ZP_07228168.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB056]
 gi|301513662|ref|ZP_07238899.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB058]
 gi|301596500|ref|ZP_07241508.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB059]
 gi|332851104|ref|ZP_08433213.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013150]
 gi|332869623|ref|ZP_08438834.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013113]
 gi|332875994|ref|ZP_08443780.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6014059]
 gi|169147976|emb|CAM85839.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii AYE]
 gi|183210761|gb|ACC58159.1| ATPase involved in DNA replication initiation [Acinetobacter
           baumannii ACICU]
 gi|193078085|gb|ABO13020.2| putative chromosomal replication initiator DnaA-type [Acinetobacter
           baumannii ATCC 17978]
 gi|213057449|gb|ACJ42351.1| DnaA family protein [Acinetobacter baumannii AB0057]
 gi|213987719|gb|ACJ58018.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii
           AB307-0294]
 gi|260409791|gb|EEX03091.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii ATCC
           19606]
 gi|322509081|gb|ADX04535.1| Putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii 1656-2]
 gi|323519111|gb|ADX93492.1| DNA replication initiation ATPase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730268|gb|EGJ61593.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013150]
 gi|332732670|gb|EGJ63902.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013113]
 gi|332735860|gb|EGJ66901.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6014059]
          Length = 232

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 20/149 (13%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125
           + G +G+GKS L +   D       S I  SL  +L    + +  LE  DL+  +D +  
Sbjct: 44  IYGGAGTGKSHLLSAICDSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDDIESI 103

Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI---SLP 173
                    +FH++N+   ++  L+ ++R  P+   + LPDL SRL  A  VK+   SL 
Sbjct: 104 SGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKVPSGSLY 160

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
            D +   ++  + A R I  D+++  Y++
Sbjct: 161 ADRY--ALVTSVMARRGIHFDQQIVDYLL 187


>gi|169632704|ref|YP_001706440.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii SDF]
 gi|239501016|ref|ZP_04660326.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii AB900]
 gi|260549334|ref|ZP_05823554.1| DnaA regulatory inactivator Hda [Acinetobacter sp. RUH2624]
 gi|169151496|emb|CAP00259.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii]
 gi|260407740|gb|EEX01213.1| DnaA regulatory inactivator Hda [Acinetobacter sp. RUH2624]
          Length = 232

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 20/149 (13%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125
           + G +G+GKS L +   D       S I  SL  +L    + +  LE  DL+  +D +  
Sbjct: 44  IYGGAGTGKSHLLSAICDSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDDIESI 103

Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI---SLP 173
                    +FH++N+   ++  L+ ++R  P+   + LPDL SRL  A  VK+   SL 
Sbjct: 104 SGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKVPSGSLY 160

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
            D +   ++  + A R I  D+++  Y++
Sbjct: 161 ADRY--ALVTSVMARRGIHFDQQIVDYLL 187


>gi|312962335|ref|ZP_07776826.1| DnaA family protein [Pseudomonas fluorescens WH6]
 gi|311283262|gb|EFQ61852.1| DnaA family protein [Pseudomonas fluorescens WH6]
          Length = 234

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGKQGVGRTHLL-----QAACLRFEQMGEPAVYLPLA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            L+D    +   LE  +L+  +D Q           LFH+ N +      LL+ A T P 
Sbjct: 83  ELMDRGIGIFDHLEQYELVCLDDLQAIAGKADWEEALFHLFNRLRDSGRRLLIAAATSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              + L DL SRL  A + ++  L D+D L  + ++  + R + +  ++  +I+ R  RS
Sbjct: 143 ELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +     L++++D  +L       R L    LKET
Sbjct: 202 MSALFDLLEQLDQASLQ----AQRKLTIPFLKET 231


>gi|78048657|ref|YP_364832.1| hypothetical protein XCV3101 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037087|emb|CAJ24832.1| replication related protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 235

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117
           + L GP+G+GK+ LA ++ +   ++ R          A  L   L  ++ R  V L+ ++
Sbjct: 44  LYLSGPAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRGLVALDGVE 103

Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173
            +     ++  LF   N       +LL TAR  P    + LPDL SRL  +  ++I LP 
Sbjct: 104 SIAGRRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCIRIGLPV 161

Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            DD     V+      R + +D+    +++   ER L     L+D++D  +L+
Sbjct: 162 LDDAARGAVLRDRAQRRGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLA 214


>gi|325926061|ref|ZP_08187424.1| regulatory inactivation of DnaA Hda protein [Xanthomonas perforans
           91-118]
 gi|325543519|gb|EGD14939.1| regulatory inactivation of DnaA Hda protein [Xanthomonas perforans
           91-118]
          Length = 235

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117
           + L GP+G+GK+ LA ++ +   ++ R          A  L   L  ++ R  V L+ ++
Sbjct: 44  LYLSGPAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRGLVALDGVE 103

Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173
            +     ++  LF   N       +LL TAR  P    + LPDL SRL  +  ++I LP 
Sbjct: 104 SIAGRRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCIRIGLPV 161

Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            DD     V+      R + +D+    +++   ER L     L+D++D  +L+
Sbjct: 162 LDDAARGAVLRDRAQRRGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLA 214


>gi|293609874|ref|ZP_06692176.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828326|gb|EFF86689.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123102|gb|ADY82625.1| chromosomal replication initiator protein DnaA [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 232

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 20/149 (13%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125
           + G +G+GKS L +   D       S I  SL  +L    + +  LE  DL+  +D +  
Sbjct: 44  IYGGAGTGKSHLLSAICDSYLEIGKSAIKVSLLELLDAPIEAITSLEHYDLVALDDIESI 103

Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI---SLP 173
                    +FH++N+   ++  L+ ++R  P+   + LPDL SRL  A  VK+   SL 
Sbjct: 104 SGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKVPSGSLY 160

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
            D +   ++  + A R I  D+++  Y++
Sbjct: 161 ADRY--ALVTSVMARRGIHFDQQIVDYLL 187


>gi|311694193|gb|ADP97066.1| DNA replication initiation factor [marine bacterium HP15]
          Length = 232

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 66  VVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAK----SLDSI-LIDTRKPVLLEDI 116
           VV+L G + +GKS L     ++   + R+    +IA+      D++  ++T + V L+D+
Sbjct: 45  VVVLCGDADTGKSHLLQAVCHLGEKQGRAAVCISIAELEPFGPDALSGLETHEIVCLDDV 104

Query: 117 DLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           D +      +  +FH+ N I      LL++    P S    LPDL SR     V+++ + 
Sbjct: 105 DRIAGQRVWEEAIFHLYNRILDRGGLLLVSLADLPASLPFELPDLISRFSHGLVIQLGIY 164

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
            D+    ++      R + +   +A+YI++R  R L     ++D +D  +L
Sbjct: 165 RDEDRLTILRARAEKRGLVMADDVASYIMRRAPRRLGDLLGILDILDENSL 215


>gi|71281837|ref|YP_269890.1| hypothetical protein CPS_3194 [Colwellia psychrerythraea 34H]
 gi|71147577|gb|AAZ28050.1| conserved hypothetical protein [Colwellia psychrerythraea 34H]
          Length = 235

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 31/215 (14%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105
              + Q    I+S  S P     L G S  GKS L +     + ST  + I KS  S+ +
Sbjct: 28  QGVVTQLKSYIESQQSTPHSFY-LFGLSSVGKSHLMH-----ASSTYAAQIGKS--SVCL 79

Query: 106 DTRK----PVL----LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTART 146
              +    PV     LE IDL+  +D  L           F + N + + ++ LL++   
Sbjct: 80  SCAELKQLPVEVLDGLEQIDLICLDDIHLIAGDTRWQQAIFDLFNRVLEQNNYLLISGDE 139

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQR 204
                G+ LPDL SRL      ++   DD+  EKVI   +    R +F+  ++  +++ R
Sbjct: 140 SAQQLGISLPDLVSRLTWGLTEQVKPVDDE--EKVIALQYRATQRGLFLSDEVVKFLLNR 197

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + R +      +D +D  ++     IT     EVL
Sbjct: 198 LSRDMGSLINSLDVLDKASIQEQRKITIPFIKEVL 232


>gi|224027038|ref|ZP_03645404.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM
           18228]
 gi|224020274|gb|EEF78272.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM
           18228]
          Length = 469

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 36/214 (16%)

Query: 63  PSRV---VILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94
           P+R    + L GPSG GK+ L N                          ++D  R+  F+
Sbjct: 162 PARTFNPLFLYGPSGVGKTHLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 221

Query: 95  NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     +++D ++ID      +++   +       FHI N +HQ    L++T+   PV  
Sbjct: 222 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 276

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L +R K   V ++  PD +  + ++        + I + +  YI + +  S+  
Sbjct: 277 QGMEDRLLTRFKWGLVAELEKPDIELRKNILRNKIRRDGLTIPESVICYIAENVNESVRE 336

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            E +V+ +   ++     I   LA  ++++  +C
Sbjct: 337 LEGIVNSLLAQSILLKREINLDLAQRIVRKAVRC 370


>gi|82523748|emb|CAI78748.1| chromosomal replication initiator protein dnaA [uncultured gamma
           proteobacterium]
          Length = 243

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 24/191 (12%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRS-TRFSNIAK--------------SLDSILIDTRKP 110
           ++ + GP G+GKS L        R+ T +  +A+               LD + ID  + 
Sbjct: 58  IIYVYGPPGAGKSHLLQASCHAGRAETLYLPLAELRQFPGQEVMQGVERLDRVCIDDVQA 117

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           VL  D D     +  LF+  N   Q    +++     P +  V L DL SRL    V ++
Sbjct: 118 VL-GDADW----ELALFNFCNGARQRGCRMVVAGDAAPRALAVNLADLRSRLSWGIVYQL 172

Query: 171 SLPDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +   D+  EKV +  F    R + + K +A +IV R  R+      ++D++D  +L+R  
Sbjct: 173 AEGSDE--EKVDILRFRATRRGLSLSKSVATFIVSRAPRATEQLLMVLDQLDKHSLARQR 230

Query: 229 GITRSLAAEVL 239
            ++     EV+
Sbjct: 231 ALSIPFVKEVM 241


>gi|261365987|ref|ZP_05978870.1| DnaA regulatory inactivator Hda [Neisseria mucosa ATCC 25996]
 gi|288565417|gb|EFC86977.1| DnaA regulatory inactivator Hda [Neisseria mucosa ATCC 25996]
          Length = 222

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 27/189 (14%)

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----ILIDTRKPVLLED--------IDL 118
           G  G+GKS L   W           +A++LD+    + ID     L E         ID 
Sbjct: 43  GEEGAGKSHLLRAW-----------VAQALDAGKKAVYIDASATPLTEAAFEAEYLAIDQ 91

Query: 119 LD--FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           ++   N+ Q  LF + N         L+ +        V   DL +R+    V ++    
Sbjct: 92  IEKLGNEEQALLFAVFNRFRNSGKGFLLLSSEHTPQQLVIREDLRTRMAYCLVYEVKPLT 151

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           D      +V M A RQ+ ID ++  Y++    R +    +++D +DN A++ G  IT  L
Sbjct: 152 DQEKIDALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMQMLDTLDNYAVTMGKRITLPL 211

Query: 235 AAEVLKETQ 243
             ++LK+ +
Sbjct: 212 LRQLLKQQE 220


>gi|325297173|ref|YP_004257090.1| Chromosomal replication initiator protein dnaA [Bacteroides
           salanitronis DSM 18170]
 gi|324316726|gb|ADY34617.1| Chromosomal replication initiator protein dnaA [Bacteroides
           salanitronis DSM 18170]
          Length = 469

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 85/214 (39%), Gaps = 36/214 (16%)

Query: 63  PSRV---VILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94
           P+R    + L GPSG GK+ L N                          ++D  R+  F+
Sbjct: 161 PARTFNPLFLYGPSGVGKTHLINAIGTRIKELYPEKRVLYISAHLFQVQYTDSIRTNHFN 220

Query: 95  NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     + +D ++ID      +++   +       FHI N +HQ    L++T+   PV  
Sbjct: 221 DFITFYQQIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 275

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L +R K   + ++  PD D  + ++        + I   +  YI + +  S+  
Sbjct: 276 QGIEDRLLTRFKWGLIAELERPDIDLRKNILRSKIRRDGLNIPDAVINYIAENVNESVRE 335

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            E +V+ +   ++     I   LA  ++++  +C
Sbjct: 336 LEGIVNSLLVYSIQLKREINLDLAQHIVQKAVRC 369


>gi|187922752|ref|YP_001894394.1| DnaA regulatory inactivator Hda [Burkholderia phytofirmans PsJN]
 gi|187713946|gb|ACD15170.1| DnaA regulatory inactivator Hda [Burkholderia phytofirmans PsJN]
          Length = 256

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 8/176 (4%)

Query: 65  RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121
           R   L G SGSG++ L  A +        RF+    SL +   D R  +  ++D D L  
Sbjct: 47  RTFYLWGESGSGRTHLLQALVHEASPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSA 106

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLE 179
                +F++ N +  + +S L+ A   P        DL +RL    V  ++ LPD+   +
Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEG--K 164

Query: 180 KVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
             ++K  A +R I +   + AY++    R +     L+D +D  +L +   +T  L
Sbjct: 165 AAVLKHAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220


>gi|171057364|ref|YP_001789713.1| DnaA regulatory inactivator Hda [Leptothrix cholodnii SP-6]
 gi|170774809|gb|ACB32948.1| DnaA regulatory inactivator Hda [Leptothrix cholodnii SP-6]
          Length = 225

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 16/191 (8%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI------DTRKPVLLEDI 116
           P+  + L GP GSGK+ L    +  ++    S +  +LD   +      D    +LL+D 
Sbjct: 39  PATPLYLWGPPGSGKTHLLRAAAALAQER--SQLVVALDCSGVPPWEFDDHTGLLLLDDC 96

Query: 117 DLLDFNDTQ-LFHIINSIHQYDSSLLMTARTFPVSWGVCLP---DLCSRLKAATVVKISL 172
           D  D    Q  F +          +L   R  PV     LP   DL +RL    V ++  
Sbjct: 97  DRYDTRRQQAAFALFVQATTLGVPVLAAGRLPPVD----LPIRDDLRTRLGWGLVYQLVP 152

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P +D +  ++ +    R I +   +  Y+++R  R L    +L+D++D  AL+    +T 
Sbjct: 153 PGEDHVRALMRREADRRGIVLSDDVIDYLLKRCARDLSHLMRLLDRLDQQALATKRAVTL 212

Query: 233 SLAAEVLKETQ 243
            L  +VL E++
Sbjct: 213 PLVRKVLAESE 223


>gi|73661310|ref|YP_300091.1| chromosomal replication initiation protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123747926|sp|Q4A180|DNAA_STAS1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|72493825|dbj|BAE17146.1| chromosomal replication initiator protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 455

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147
           +++ RF    +++D +LID      ++ I   +    + FH  N +HQ +  +++++   
Sbjct: 203 NKTERFREKYRNIDVLLIDD-----IQFIQNKEQTQEEFFHTFNELHQANKQIVISSDRP 257

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P         L SR +   +V I+ PD +    ++ K   +  + I  +   YI  +++ 
Sbjct: 258 PKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIGEENLNIPTEALTYIANQIQS 317

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           ++   E  + ++   +  +G  IT  L AE LK+  Q 
Sbjct: 318 NIRELEGALTRVLAFSKLQGQPITTELTAEALKDIIQA 355


>gi|299769105|ref|YP_003731131.1| DnaA regulatory inactivator Hda [Acinetobacter sp. DR1]
 gi|298699193|gb|ADI89758.1| DnaA regulatory inactivator Hda [Acinetobacter sp. DR1]
          Length = 232

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 33/173 (19%)

Query: 58  SWPSWPSRV-------------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           S PSW + V               + G +G+GKS L +   D       S I  SL  +L
Sbjct: 20  SGPSWGNVVDAVRQLHAGLVSRFYIYGGAGTGKSHLLSAICDSYLEVGKSAIKVSLLELL 79

Query: 105 IDTRKPVL-LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +  LE  DL+  +D +           +FH++N+   ++  L+ ++R  P+   
Sbjct: 80  DAPIEAITSLEHYDLVALDDIESISGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELK 136

Query: 153 VCLPDLCSRLKAATVVKI---SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           + LPDL SRL  A  VK+   SL  D +   ++  + + R I  D+++  Y++
Sbjct: 137 LELPDLQSRLTQAVSVKVPSGSLYADRY--SLVTSVMSRRGIHFDQQIVDYLL 187


>gi|221134619|ref|ZP_03560922.1| Chromosomal replication initiator, DnaA like protein to DnaA
           protein Hda [Glaciecola sp. HTCC2999]
          Length = 246

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 55/115 (47%)

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           LF +IN   +   ++++T+   P     CLPDL SRL    V  I    DD L + +   
Sbjct: 131 LFDLINRCIESACAMVLTSALGPAHHDFCLPDLRSRLTWGQVYHIHPLTDDGLLQAVTSY 190

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +     +Y+++   R     ++++D++D ++LS    IT  L  +VL 
Sbjct: 191 VQTKGLNMQMNAISYLLKFSTRDFSSIQRVIDELDKVSLSHQQAITIPLIKKVLH 245


>gi|54295630|ref|YP_128045.1| hypothetical protein lpl2717 [Legionella pneumophila str. Lens]
 gi|53755462|emb|CAH16958.1| hypothetical protein lpl2717 [Legionella pneumophila str. Lens]
 gi|307611672|emb|CBX01364.1| hypothetical protein LPW_30571 [Legionella pneumophila 130b]
          Length = 230

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 99/194 (51%), Gaps = 24/194 (12%)

Query: 65  RVVILVGPSGSGKS-----CLANIWSDKSRSTRFSNIA-------KSLDSILIDTRKPVL 112
           R++ L GP GSGKS     C   I  + ++S  +  +A       +S++ +  + +  + 
Sbjct: 42  RLLYLWGPKGSGKSHLLQACCQAI--NLTQSAIYLPLAFLKEWGPQSIEGL--EDQTLIC 97

Query: 113 LEDIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVV 168
           ++DI+ +  + T    LFH+ N I   + SLL+ +    P+   + L DL SRL    V+
Sbjct: 98  IDDINTIANDSTWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRLSWGLVI 157

Query: 169 KISLPDDDFLEKV-IVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +++  +DD  EK+  +KM A ++ F + + +  +++ R  R++    +L++++D+ +   
Sbjct: 158 QLNELNDD--EKINTLKMRAAKRGFELPESVGHFLLNRCSRNMHDLYELLNRLDDASWEA 215

Query: 227 GMGITRSLAAEVLK 240
              IT      +LK
Sbjct: 216 HRKITIPFVKNILK 229


>gi|262278142|ref|ZP_06055927.1| DnaA family protein [Acinetobacter calcoaceticus RUH2202]
 gi|262258493|gb|EEY77226.1| DnaA family protein [Acinetobacter calcoaceticus RUH2202]
          Length = 232

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 33/173 (19%)

Query: 58  SWPSWPSRV-------------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           S PSW + V               + G +G+GKS L +   D       S I  SL  +L
Sbjct: 20  SGPSWGNVVDAVRQLHAGLVSRFYIYGGAGTGKSHLLSAICDSYLEIGKSAIKVSLLELL 79

Query: 105 IDTRKPVL-LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +  LE  DL+  +D +           +FH++N+   ++  L+ ++R  P+   
Sbjct: 80  DAPIEAITSLEHYDLVALDDIESISGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELK 136

Query: 153 VCLPDLCSRLKAATVVKI---SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           + LPDL SRL  A  VK+   SL  D +   ++  + + R I  D+++  Y++
Sbjct: 137 LELPDLQSRLTQAVSVKVPSGSLYADRY--ALVTSVMSRRGIHFDQQIVDYLL 187


>gi|251791830|ref|YP_003006550.1| DnaA regulatory inactivator Hda [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533217|gb|ACS96463.1| DnaA regulatory inactivator Hda [Aggregatibacter aphrophilus
           NJ8700]
          Length = 234

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 13/184 (7%)

Query: 69  LVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLL 119
           L G  GSGKS L       +  + R   +  + K+     ++L  ++ +  V L+D+  +
Sbjct: 49  LWGNKGSGKSHLLKGVCQHYLAQQRPALYVPLNKAQYFSPAVLENLEQQALVCLDDLQAV 108

Query: 120 DFN---DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
             N   +  +F +IN + +   +LL M+A   P +  V LPDL SRL    V +++  +D
Sbjct: 109 IGNAEWEVAIFDLINRVRETGRTLLIMSADQSPANLPVQLPDLASRLTWGEVYQLAPLND 168

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
                V+ K    R I +  + A ++ +R+ER +      ++K+D  +L     +T    
Sbjct: 169 KQKIDVLQKAAYQRGIELPDETANFLFKRLERDMKTLFNALEKLDQASLQAQRKLTIPFV 228

Query: 236 AEVL 239
            E+L
Sbjct: 229 KEIL 232


>gi|229591907|ref|YP_002874026.1| DNA replication initiation factor [Pseudomonas fluorescens SBW25]
 gi|229363773|emb|CAY51191.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 234

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 28/214 (13%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103
           +A+    RL ++   W   ++ L G  G G++ L      ++   RF  + +    +   
Sbjct: 28  AALGYVERLCEADAGWTESLIYLWGKHGVGRTHLL-----QAACLRFEQMGEPAVYLPLA 82

Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149
            L+D    +   LE  +L+  +D Q           LFH+ N +      LL+ A + P 
Sbjct: 83  ELMDRGIGIFDHLEQYELVCLDDLQAIAGKADWEEALFHLFNRLRDSGRRLLIAASSSPR 142

Query: 150 SWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              + L DL SRL  A + ++  L D+D L  + ++  + R + +  ++  +I+ R  RS
Sbjct: 143 ELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +     L++++D  +L       R L    LKET
Sbjct: 202 MSALFDLLEQLDQASLQ----AQRKLTIPFLKET 231


>gi|53803270|ref|YP_114933.1| DnaA domain-containing protein [Methylococcus capsulatus str. Bath]
 gi|53757031|gb|AAU91322.1| DnaA domain protein [Methylococcus capsulatus str. Bath]
          Length = 232

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 16/174 (9%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----------- 114
           ++ L G +G GK+ L N    ++     S  A  L   LI    P +LE           
Sbjct: 43  LLYLWGDTGLGKTHLVNAACREAFHNGRS--AACLPLALIGECGPAVLEGMENQNLVCLD 100

Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DID +   D    QLF + N++    ++LL+TA   P    V LPDL +RL    V+++ 
Sbjct: 101 DIDTIAGRDDWERQLFGLFNAMRDAGNTLLITATAPPAELPVALPDLKTRLAWGLVLRLH 160

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              D+     + +      + +  ++  +++    R +   + L++++D+ +L+
Sbjct: 161 PLTDEHKLAALERRAGMLGLDLSPRVGRFLLSHCRRDMASLQALLEELDHASLA 214


>gi|157375578|ref|YP_001474178.1| DNA replication initiation factor [Shewanella sediminis HAW-EB3]
 gi|157317952|gb|ABV37050.1| chromosomal replication initiator, DnaA [Shewanella sediminis
           HAW-EB3]
          Length = 236

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 23/194 (11%)

Query: 65  RVVILVGPSGSGKSCLANIW----SDKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDL 118
           R V L GP  SG++ L +      +D  RS+ +    I  S+  +L++      LE +DL
Sbjct: 47  RSVFLWGPVKSGRTHLMHAACAHANDLERSSFYLPLGIHASISPMLLEG-----LEQLDL 101

Query: 119 LDFNDT-----------QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           +  +D             +F + N + ++D+ SL+++A   P   G  LPDL SR++   
Sbjct: 102 ICIDDVDAIAGHPLWEEAIFDLYNRVSEHDNCSLIVSASVSPNDSGFALPDLVSRMQWGL 161

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
             ++    DD     + +  A R + + + +  +++ R+ R L     ++D++D  +L  
Sbjct: 162 NYQLQPMADDEKLAALQRRAAMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKDSLVH 221

Query: 227 GMGITRSLAAEVLK 240
              +T     E+L+
Sbjct: 222 QRKLTIPFVKEMLR 235


>gi|237807692|ref|YP_002892132.1| DnaA regulatory inactivator Hda [Tolumonas auensis DSM 9187]
 gi|237499953|gb|ACQ92546.1| DnaA regulatory inactivator Hda [Tolumonas auensis DSM 9187]
          Length = 234

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 28/212 (13%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
           L ++AI + V LI  W           G  GSG+S L +    +      S +   LD  
Sbjct: 35  LKNAAIGEGVPLIYFW-----------GCRGSGRSHLLHATCAEINGNGESAVYIPLDRH 83

Query: 104 LIDTRKPVLLEDID-----LLDFNDT---------QLFHIINSIHQYD-SSLLMTARTFP 148
             D   P +LE ++      LD  D           LF++ N   +    SL+M+A T P
Sbjct: 84  --DQYSPDILEGMERMPLLCLDNLDAVAGSRVWEESLFNLFNRWKETSRGSLIMSASTAP 141

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              G+CLPDL SRL      ++   DD+     +    A R   +   +  +++ R+ R 
Sbjct: 142 RKLGLCLPDLASRLDWGVSFQLHELDDEGKLGALQLRAALRGFKLPVDVGRFLLNRLSRD 201

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +    + +D +D+ +L     +T     EVL+
Sbjct: 202 MRMLLQTLDTLDSASLHAQRKLTIPFIKEVLE 233


>gi|198275620|ref|ZP_03208151.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135]
 gi|198271249|gb|EDY95519.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/214 (19%), Positives = 88/214 (41%), Gaps = 36/214 (16%)

Query: 63  PSRV---VILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94
           P+R    + + GPSG GK+ L N                          ++D  R+  F+
Sbjct: 163 PARTFNPLFIYGPSGVGKTHLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 222

Query: 95  NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     +++D ++ID      +++   +       FHI N +HQ    L++T+   PV  
Sbjct: 223 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 277

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L +R K   V ++  PD +  + ++        + I + + +YI + +  S+  
Sbjct: 278 QGMEERLLTRFKWGLVAELEKPDIELRKNILRNKIKRDGLTIPESVISYIAESVNESVRE 337

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            E +V+ +   ++     I   LA  ++++  +C
Sbjct: 338 LEGIVNSLLAQSILFKREIDLDLAQRIVRKAVKC 371


>gi|220935417|ref|YP_002514316.1| regulatory inactivation of DnaA Hda protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996727|gb|ACL73329.1| regulatory inactivation of DnaA Hda protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 233

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 30/198 (15%)

Query: 65  RVVILVGPSGSGKSCL-------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           R + L G  GSGK+ L       A++W  +         A  L + L+       LE +D
Sbjct: 43  RQLYLYGEPGSGKTHLLQAACHEASLWGRR---------AAYLPAFLLRQGGAHALEGLD 93

Query: 118 LLDF--------------NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
            LD                +T LF++IN+    D+ L++     P +    LPDL SRL 
Sbjct: 94  QLDLVCLDGISALVGCVETETGLFNLINASRCRDTRLVLADTHAPRALSAALPDLGSRLV 153

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              V ++   DD     V+V+    R   +  ++  ++++   R L      +++++  +
Sbjct: 154 WGPVFQLQPLDDAGKRAVLVERARRRGFDLPGEVGEFLLRTCARDLATLMVQLERLEQAS 213

Query: 224 LSRGMGITRSLAAEVLKE 241
           L     +T   A  VL E
Sbjct: 214 LRDQRRVTLPFARAVLGE 231


>gi|255065691|ref|ZP_05317546.1| DnaA regulatory inactivator Hda [Neisseria sicca ATCC 29256]
 gi|255050009|gb|EET45473.1| DnaA regulatory inactivator Hda [Neisseria sicca ATCC 29256]
          Length = 222

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 27/189 (14%)

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----ILIDTRKPVLLED--------IDL 118
           G  G+GKS L   W           +A++LD+    + ID     L E         ID 
Sbjct: 43  GEEGAGKSHLLRAW-----------VAQALDAGKKAVYIDAAATPLTEAAFEAEYLAIDQ 91

Query: 119 LD--FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           ++   N+ Q  LF + N         L+ +        V   DL +R+    V ++    
Sbjct: 92  IEKLGNEEQALLFAVFNRFRNSGKGFLLLSSEHTPQQLVIREDLRTRMAYCLVYEVKPLT 151

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           D      +V M A RQ+ ID ++  Y++    R +    +++D +DN A++ G  IT  L
Sbjct: 152 DREKIDALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMQMLDTLDNYAVTMGKRITLPL 211

Query: 235 AAEVLKETQ 243
             ++LK+ +
Sbjct: 212 LRQLLKQQE 220


>gi|118594068|ref|ZP_01551415.1| hypothetical protein MB2181_00330 [Methylophilales bacterium
           HTCC2181]
 gi|118439846|gb|EAV46473.1| hypothetical protein MB2181_00330 [Methylophilales bacterium
           HTCC2181]
          Length = 197

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 33/198 (16%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106
           ++IE+ ++  D +       + + G SGSGKS LA+   +K+                  
Sbjct: 29  NSIERLIKSTDHF------FIYIWGESGSGKSHLASALREKNVK---------------- 66

Query: 107 TRKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
                ++ED++  D ND Q  LF++ N   +  + L++T    P    +  PDL SRL  
Sbjct: 67  -----VVEDVENFD-NDQQIELFNLFNKSKKLRNKLVITGNDAPNKMNL-RPDLASRLSW 119

Query: 165 ATVVKISLPDDDFLEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             V +I  P  D  +KV ++ +A  + +  D+K+ +Y +  ++R L      +D +D  +
Sbjct: 120 ELVYQIK-PLTDEEKKVALEYYAMQKGMSFDRKIISYCMANLKRDLPSLISTLDALDEWS 178

Query: 224 LSRGMGITRSLAAEVLKE 241
           L     IT  L  ++LK+
Sbjct: 179 LKAKRPITIPLLIQLLKK 196


>gi|323524829|ref|YP_004226982.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1001]
 gi|323381831|gb|ADX53922.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1001]
          Length = 247

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 4/184 (2%)

Query: 65  RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121
           R   + G +GSG++ L  A +        RF+    SL +   D R  +  ++D D L  
Sbjct: 47  RTFYIWGEAGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFGFDPRIALYAIDDCDGLSA 106

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                +F++ N +  + +S L+ A   P        DL +RL    V  ++   D+    
Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEAKAA 166

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           V+ +   +R I +   + AY++    R +     L+D +D  +L +   +T  L   +L 
Sbjct: 167 VLKRAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLA 226

Query: 241 ETQQ 244
              Q
Sbjct: 227 SPGQ 230


>gi|294775360|ref|ZP_06740882.1| chromosomal replication initiator protein DnaA [Bacteroides
           vulgatus PC510]
 gi|319642816|ref|ZP_07997454.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           3_1_40A]
 gi|294450817|gb|EFG19295.1| chromosomal replication initiator protein DnaA [Bacteroides
           vulgatus PC510]
 gi|317385560|gb|EFV66501.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           3_1_40A]
          Length = 468

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/214 (18%), Positives = 86/214 (40%), Gaps = 33/214 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94
           P+     + L GPSG GK+ L N                          ++D  R+  F+
Sbjct: 160 PAKTFNPLFLYGPSGVGKTHLTNAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 219

Query: 95  NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     +++D ++ID      +++   +       FHI N +HQ    L++T+   PV  
Sbjct: 220 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 274

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L +R K   V ++  PD +  + ++        + I + +  YI + +  S+  
Sbjct: 275 QGMEERLLTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRE 334

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            E +++ +   ++     +   LA  ++++  +C
Sbjct: 335 LEGIINSLLAQSIIFKRDVDLDLAERIVRKAVRC 368


>gi|212691082|ref|ZP_03299210.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855]
 gi|237712418|ref|ZP_04542899.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           9_1_42FAA]
 gi|237726609|ref|ZP_04557090.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D4]
 gi|265752120|ref|ZP_06087913.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           3_1_33FAA]
 gi|212666314|gb|EEB26886.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855]
 gi|229435135|gb|EEO45212.1| chromosomal replication initiator protein DnaA [Bacteroides dorei
           5_1_36/D4]
 gi|229453739|gb|EEO59460.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           9_1_42FAA]
 gi|263236912|gb|EEZ22382.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           3_1_33FAA]
          Length = 471

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/214 (18%), Positives = 86/214 (40%), Gaps = 33/214 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94
           P+     + L GPSG GK+ L N                          ++D  R+  F+
Sbjct: 163 PAKTFNPLFLYGPSGVGKTHLTNAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 222

Query: 95  NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     +++D ++ID      +++   +       FHI N +HQ    L++T+   PV  
Sbjct: 223 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 277

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L +R K   V ++  PD +  + ++        + I + +  YI + +  S+  
Sbjct: 278 QGMEERLLTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRE 337

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            E +++ +   ++     +   LA  ++++  +C
Sbjct: 338 LEGIINSLLAQSIIFKRDVDLDLAERIVRKAVRC 371


>gi|94498878|ref|ZP_01305416.1| hypothetical protein RED65_08829 [Oceanobacter sp. RED65]
 gi|94428510|gb|EAT13482.1| hypothetical protein RED65_08829 [Oceanobacter sp. RED65]
          Length = 232

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 88/187 (47%), Gaps = 16/187 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFNDT 124
           + + G SG G S L      ++++   +++   L+  L++    V   LE++ L+  ++ 
Sbjct: 46  IFIYGESGCGTSHLLQAACHEAQTHDLNSVYLPLEE-LVEYSPAVFESLENLPLIALDNM 104

Query: 125 Q-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SL 172
           Q           +FH+ N +      ++M A       G+ L DL SRL    V ++  L
Sbjct: 105 QAIAGLPAWEEAVFHLFNRVRDNGGHIIMAANDSIEGLGIKLADLKSRLHWGLVYELPEL 164

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            ++D +  + ++   +R + +   +A Y+V++ME  +    + ++++D  +LS    +TR
Sbjct: 165 TEEDKMAALKLRAH-NRGLELGDDVAKYVVRQMEGHMDKMFEALNQLDKASLSAKRKVTR 223

Query: 233 SLAAEVL 239
               +V+
Sbjct: 224 PFVKDVM 230


>gi|150002609|ref|YP_001297353.1| chromosomal replication initiation protein [Bacteroides vulgatus
           ATCC 8482]
 gi|254881428|ref|ZP_05254138.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           4_3_47FAA]
 gi|149931033|gb|ABR37731.1| chromosomal replication initiator protein DnaA [Bacteroides
           vulgatus ATCC 8482]
 gi|254834221|gb|EET14530.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           4_3_47FAA]
          Length = 471

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/214 (18%), Positives = 86/214 (40%), Gaps = 33/214 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94
           P+     + L GPSG GK+ L N                          ++D  R+  F+
Sbjct: 163 PAKTFNPLFLYGPSGVGKTHLTNAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 222

Query: 95  NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     +++D ++ID      +++   +       FHI N +HQ    L++T+   PV  
Sbjct: 223 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 277

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L +R K   V ++  PD +  + ++        + I + +  YI + +  S+  
Sbjct: 278 QGMEERLLTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRE 337

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            E +++ +   ++     +   LA  ++++  +C
Sbjct: 338 LEGIINSLLAQSIIFKRDVDLDLAERIVRKAVRC 371


>gi|54298784|ref|YP_125153.1| hypothetical protein lpp2848 [Legionella pneumophila str. Paris]
 gi|53752569|emb|CAH14001.1| hypothetical protein lpp2848 [Legionella pneumophila str. Paris]
          Length = 230

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 100/195 (51%), Gaps = 26/195 (13%)

Query: 65  RVVILVGPSGSGKS-----CLANIWSDKSRSTRFSNIA-------KSLDSILIDTRKPVL 112
           R++ L GP GSGKS     C   I  + ++S  +  +A       +S++ +  + +  + 
Sbjct: 42  RLLYLWGPKGSGKSHLLQACCQAI--NLTQSAIYLPLAFLKEWGPQSIEGL--EDQTLIC 97

Query: 113 LEDIDLLDFNDTQ----LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATV 167
           ++DI+ +  ND+     LFH+ N I   + SLL+ +    P+   + L DL SRL    V
Sbjct: 98  IDDINTI-ANDSAWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRLSWGLV 156

Query: 168 VKISLPDDDFLEKV-IVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           ++++  +DD  EK+  +KM A ++ F + + +  +++ R  R++    +L++++D+ +  
Sbjct: 157 IQLNELNDD--EKINTLKMRAAKRGFELPESVGHFLLNRCSRNMHDLYELLNRLDDASWE 214

Query: 226 RGMGITRSLAAEVLK 240
               IT      +LK
Sbjct: 215 AHRKITIPFVKNILK 229


>gi|261377806|ref|ZP_05982379.1| DnaA regulatory inactivator Hda [Neisseria cinerea ATCC 14685]
 gi|269146107|gb|EEZ72525.1| DnaA regulatory inactivator Hda [Neisseria cinerea ATCC 14685]
          Length = 222

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 21/193 (10%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLD 120
            + + + G  G+GKS L   W  ++       +    +++ +D     L +   D D L 
Sbjct: 36  GQFIYVWGEEGAGKSHLLQAWVAQA-------LEAGKNAVYVDAAAEPLTDSALDADYLA 88

Query: 121 FNDTQ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI- 170
            +  +         LF I N         L+          V   DL +R+    V ++ 
Sbjct: 89  IDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSESTPQQLVIREDLRTRMAYCLVYEVK 148

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           SL D + ++  +V M A RQ+ ID ++  Y++    R +     ++D +DN A++ G  I
Sbjct: 149 SLTDREKID-ALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMDMLDTLDNYAVTMGKRI 207

Query: 231 TRSLAAEVLKETQ 243
           T  L  ++LK+ +
Sbjct: 208 TLPLLRQLLKQQE 220


>gi|104780562|ref|YP_607060.1| DNA replication initiation factor [Pseudomonas entomophila L48]
 gi|95109549|emb|CAK14250.1| conserved hypothetical protein; DnaA family protein [Pseudomonas
           entomophila L48]
          Length = 261

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 93/209 (44%), Gaps = 18/209 (8%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-- 104
           +A+    RL ++   W   ++ L G  G G++ L    + + +      +   L  +L  
Sbjct: 55  AALGYVERLCEADAGWTESLIYLWGKQGVGRTHLLQAATHRFQQLGEPAVYLPLAQLLER 114

Query: 105 -------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                  ++  + V ++D+ ++      +  +FH+ N +      LL+ A + P    + 
Sbjct: 115 GVELLDHLEQYELVCIDDLHVIAGKADWEEAMFHLFNRLRDSGRRLLLAASSSPRELPIK 174

Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           L DL SRL  A + ++  + D+D L  + ++  + R + +  ++  +I+ R  RS+    
Sbjct: 175 LADLKSRLTLALIFQMRGMSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRSMSALF 233

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            L++++D  +L       R L    LKET
Sbjct: 234 DLLERLDQASLQ----AQRKLTIPFLKET 258


>gi|87307796|ref|ZP_01089939.1| chromosomal replication initiator protein dnaA [Blastopirellula
           marina DSM 3645]
 gi|87289410|gb|EAQ81301.1| chromosomal replication initiator protein dnaA [Blastopirellula
           marina DSM 3645]
          Length = 460

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 29/157 (18%)

Query: 67  VILVGPSGSGKS-CLANIWSDKSRSTRFSNI----AKSLDSILIDT----------RKPV 111
           + + GP GSGK+  L  I+ +  RS +F  +    A+   +  +D           RK  
Sbjct: 151 LFICGPQGSGKTHLLEGIYGEARRSKKFERVVYLSAEQFTTYFLDALNGSGVANFRRK-- 208

Query: 112 LLEDIDLLDFNDTQLF-----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              D DLL  +D Q F           H ++SI +    +++ A   P       P+L +
Sbjct: 209 -YRDADLLIIDDVQFFAGKRATRTELLHTLDSITRRGGQIVLAADKRPTELSALGPELIA 267

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           R     V ++   D D   K+  K+ A R +   + L
Sbjct: 268 RFSGGLVCEVHEIDRDTRRKMAEKLCASRDMNASRGL 304


>gi|148361114|ref|YP_001252321.1| DnaA-like family transporter protein [Legionella pneumophila str.
           Corby]
 gi|296108445|ref|YP_003620146.1| DnaA-like family protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148282887|gb|ABQ56975.1| DnaA-like family protein [Legionella pneumophila str. Corby]
 gi|295650347|gb|ADG26194.1| DnaA-like family protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 230

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 100/195 (51%), Gaps = 26/195 (13%)

Query: 65  RVVILVGPSGSGKS-----CLANIWSDKSRSTRFSNIA-------KSLDSILIDTRKPVL 112
           R++ L GP GSGKS     C   I  + ++S  +  +A       +S++ +  + +  + 
Sbjct: 42  RLLYLWGPKGSGKSHLLQACCQAI--NLTQSAIYLPLAFLKEWGPQSIEGL--EDQTLIC 97

Query: 113 LEDIDLLDFNDTQ----LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATV 167
           ++DI+ +  ND+     LFH+ N I   + SLL+ +    P+   + L DL SRL    V
Sbjct: 98  IDDINTI-ANDSAWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRLSWGLV 156

Query: 168 VKISLPDDDFLEKV-IVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           ++++  +DD  EK+  +KM A ++ F + + +  +++ R  R++    +L++++D+ +  
Sbjct: 157 IQLNELNDD--EKINTLKMRAAKRGFELPESVGHFLLNRCSRNMHDLYELLNQLDDASWE 214

Query: 226 RGMGITRSLAAEVLK 240
               IT      +LK
Sbjct: 215 AHRKITIPFVKNILK 229


>gi|190573155|ref|YP_001971000.1| hypothetical protein Smlt1129 [Stenotrophomonas maltophilia K279a]
 gi|190011077|emb|CAQ44686.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 236

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 16/191 (8%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTRF----------SNIAKSLDSILIDTRKPVLLED 115
           V L G +G+GK+  A  + S   ++ R             +  +LD +  + R+ V L+ 
Sbjct: 45  VYLEGAAGTGKTHQALAMCSSAEQAGRLPTYVPLASAAGRVRAALDGL--EARELVALDG 102

Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +D +  N   +  LF   N       ++L TA+  P + G+ LPDL SRL     V +  
Sbjct: 103 LDEVAGNRDDEIALFDFHNRARAAGVTVLYTAQKAPEALGLVLPDLRSRLGQCVRVLLQP 162

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            D++    V+ +    R + ID+    +++    R L     L+D +D  +L+    IT 
Sbjct: 163 LDEEGRAAVLRERALRRGLAIDEASIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITV 222

Query: 233 SLAAEVLKETQ 243
               +VL+E +
Sbjct: 223 PFLRQVLEEGR 233


>gi|28199440|ref|NP_779754.1| hypothetical protein PD1561 [Xylella fastidiosa Temecula1]
 gi|182682168|ref|YP_001830328.1| hypothetical protein XfasM23_1647 [Xylella fastidiosa M23]
 gi|28057555|gb|AAO29403.1| replication related protein [Xylella fastidiosa Temecula1]
 gi|182632278|gb|ACB93054.1| DnaA regulatory inactivator Hda [Xylella fastidiosa M23]
 gi|307578437|gb|ADN62406.1| hypothetical protein XFLM_02025 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 233

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEK 180
           ++  LF   N       +LL TAR  P   G+ LPDL SR+  A  ++I+LP  DD    
Sbjct: 111 DEIALFDFHNRARAAGITLLYTARAIPDGLGLTLPDLRSRV--AQCIRIALPTLDDVGRA 168

Query: 181 VIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++  A R+ + +D+    +++ R +R L     L++++D  +L+    +T      VL
Sbjct: 169 SVLRERAQRRGLMLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVL 228

Query: 240 KE 241
            E
Sbjct: 229 AE 230


>gi|71898099|ref|ZP_00680285.1| ATPas [Xylella fastidiosa Ann-1]
 gi|71732073|gb|EAO34129.1| ATPas [Xylella fastidiosa Ann-1]
          Length = 233

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEK 180
           ++  LF   N       +LL TAR  P   G+ LPDL SR+  A  ++I+LP  DD    
Sbjct: 111 DEIALFDFHNRARAAGITLLYTARAIPDGLGLTLPDLRSRV--AQCIRIALPTLDDVGRA 168

Query: 181 VIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++  A R+ + +D+    +++ R +R L     L++++D  +L+    +T      VL
Sbjct: 169 SVLRERAQRRGLMLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVL 228

Query: 240 KE 241
            E
Sbjct: 229 AE 230


>gi|194364750|ref|YP_002027360.1| hypothetical protein Smal_0972 [Stenotrophomonas maltophilia
           R551-3]
 gi|194347554|gb|ACF50677.1| DnaA regulatory inactivator Hda [Stenotrophomonas maltophilia
           R551-3]
          Length = 235

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 16/191 (8%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTRF----------SNIAKSLDSILIDTRKPVLLED 115
           V L G +G+GK+  A  + S   ++ R             +  +LD +  + R+ V L+ 
Sbjct: 44  VYLEGAAGTGKTHQALAMCSSAEQAGRLPTYVPLASAAGRVRAALDGL--EARELVALDG 101

Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +D +  N   +  LF   N       ++L TA+  P   G+ LPDL SRL     V +  
Sbjct: 102 LDEIAGNREDEIALFDFHNRARAAGVTVLYTAQKAPGELGLVLPDLRSRLGQCVRVLLQP 161

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            D++    V+ +    R + ID+    +++    R L     L+D +D  +L+    IT 
Sbjct: 162 LDEEGRAAVLRERALRRGLAIDEASIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITV 221

Query: 233 SLAAEVLKETQ 243
               +VL+E +
Sbjct: 222 PFLRQVLEEGR 232


>gi|15837192|ref|NP_297880.1| hypothetical protein XF0590 [Xylella fastidiosa 9a5c]
 gi|71274560|ref|ZP_00650848.1| ATPas [Xylella fastidiosa Dixon]
 gi|71901344|ref|ZP_00683439.1| ATPas [Xylella fastidiosa Ann-1]
 gi|170730815|ref|YP_001776248.1| hypothetical protein Xfasm12_1717 [Xylella fastidiosa M12]
 gi|9105454|gb|AAF83400.1|AE003904_21 conserved hypothetical protein [Xylella fastidiosa 9a5c]
 gi|71164292|gb|EAO14006.1| ATPas [Xylella fastidiosa Dixon]
 gi|71728888|gb|EAO31024.1| ATPas [Xylella fastidiosa Ann-1]
 gi|167965608|gb|ACA12618.1| chromosomal replication initiator protein DnaA [Xylella fastidiosa
           M12]
          Length = 233

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEK 180
           ++  LF   N       +LL TAR  P   G+ LPDL SR+  A  ++I+LP  DD    
Sbjct: 111 DEIALFDFHNRARAAGITLLYTARAIPDGLGLTLPDLRSRV--AQCIRIALPTLDDVGRA 168

Query: 181 VIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++  A R+ + +D+    +++ R +R L     L++++D  +L+    +T      VL
Sbjct: 169 SVLRERAQRRGLMLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVL 228

Query: 240 KE 241
            E
Sbjct: 229 AE 230


>gi|222055415|ref|YP_002537777.1| Chromosomal replication initiator DnaA [Geobacter sp. FRC-32]
 gi|221564704|gb|ACM20676.1| Chromosomal replication initiator DnaA [Geobacter sp. FRC-32]
          Length = 241

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 27/209 (12%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCL---- 80
           QL F FP       D+ +V +  + A               ++ L G  GSGK+ L    
Sbjct: 2   QLIFDFPVNSKYGFDNFVVCAGNKTAYHFARQLAEGDGTENLLYLYGAKGSGKTHLLTAI 61

Query: 81  ANIWSDKSRSTRFSNIA-KSLDSILIDTRKP----------------VLLEDIDLLDFND 123
           AN    +S      +I+ K +D I  D   P                +L++DI L+  ND
Sbjct: 62  ANSIGSQSGLAALPSISFKDIDKI-YDGHYPAEELSKLAEQFKSSPALLIDDIHLIPDND 120

Query: 124 T---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
           +   +L+ + N  +     + ++    P         L SRL    V K+ +  DD L  
Sbjct: 121 SIRVELWQLFNDFYTAGKKIAISGLYPPKELPNLDGHLTSRLLWGLVSKLDISGDDSLRM 180

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           ++ K+  DRQI + +++ AY++  + R +
Sbjct: 181 ILQKLAEDRQIVVPEEVIAYLLVHLHRDI 209


>gi|288941358|ref|YP_003443598.1| DnaA regulatory inactivator Hda [Allochromatium vinosum DSM 180]
 gi|288896730|gb|ADC62566.1| DnaA regulatory inactivator Hda [Allochromatium vinosum DSM 180]
          Length = 237

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 27/177 (15%)

Query: 67  VILVGPSGSGK------SCLANIWSDKSRSTRFSNIAKS-LDSILIDTRKPVLLEDIDLL 119
           ++L G SG+GK      SC   + S   R   F  +  + LD  +++      LE +DL+
Sbjct: 47  LLLFGASGTGKTHLLQASCQTVVRS--GRQAHFVPLGMADLDPAMLEN-----LEQMDLV 99

Query: 120 DFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
             +D Q           LF + N + +   SLL      P S    LPDL SRL      
Sbjct: 100 AIDDIQCIVGDPAWERALFDLFNRLREQGRSLLGATDAAPDSLPFSLPDLASRLLWGPRY 159

Query: 169 K-ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
           + + LPD D  E+++++    R + +  +L  +I+    R       L+ ++D+L+L
Sbjct: 160 RLLPLPDLD-CEQLLLESARGRGMRLTPELVRFIMSHHARDPASLLDLLARLDSLSL 215


>gi|292491000|ref|YP_003526439.1| DnaA regulatory inactivator Hda [Nitrosococcus halophilus Nc4]
 gi|291579595|gb|ADE14052.1| DnaA regulatory inactivator Hda [Nitrosococcus halophilus Nc4]
          Length = 235

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 65  RVVILVGPSGSGKS--CLANIWSDKSRSTRFSNIAKSLDSIL-------IDTRKPVLLED 115
           R + L GPSG GK+   LA   +   R  R + +     +I+       ++    V ++D
Sbjct: 44  RFLYLWGPSGVGKTHLLLAACQAAAQRGERVAYVPLKRAAIMAPEILRGLEAAALVAIDD 103

Query: 116 IDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ID +    + +  L H+ N   +  S LL+ +   P +  + LPDL SRL    V ++  
Sbjct: 104 IDRIAGCRYWEESLLHLYNLSREGPSQLLLASSKKPGALPLLLPDLRSRLGWGLVYQLQ- 162

Query: 173 PDDDFLEKVIVKM-FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           P DD  +   +K+  A R + +  ++AA++++  +R +     L+ +++  +++    +T
Sbjct: 163 PLDDHQKHAALKLQAAKRGMELPDEVAAFLLRHSDRDMHSLSDLLAQLERASMAAQRRLT 222

Query: 232 RSLAAEVL 239
              A +VL
Sbjct: 223 IPFARQVL 230


>gi|330815627|ref|YP_004359332.1| Chromosomal replication initiator protein DnaA [Burkholderia
           gladioli BSR3]
 gi|327368020|gb|AEA59376.1| Chromosomal replication initiator protein DnaA [Burkholderia
           gladioli BSR3]
          Length = 241

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 71  GPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLL-DFNDTQL 126
           G +GSG+S L  A ++     S R+      L +I  D R  +  ++DID + D     L
Sbjct: 55  GEAGSGRSHLLQALVYDTSYGSARYLTPQSPLGAIAFDPRVSLYAVDDIDAMSDNQQIAL 114

Query: 127 FHIINSIHQYDSSLLMTAR-TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           F++ N +  + SS  + A    P++  V   DL +RL    V  ++   D     V  + 
Sbjct: 115 FNLFNEVRAHPSSAFVGAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLSDADKAAVFKRA 173

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT----RSLAAEVLKE 241
             DR I I   + AY++    R +     L+D +D  +L +   +T    R+L A + +E
Sbjct: 174 ARDRGIAIADDVPAYLLTHYRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTLLATLERE 233

Query: 242 T 242
            
Sbjct: 234 A 234


>gi|15601882|ref|NP_244954.1| DNA replication initiation factor [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720218|gb|AAK02101.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 254

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 126 LFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +F + N I   +++LL ++A   P +  V LPDL SRL+     ++   +D     V+ K
Sbjct: 138 IFDLFNRIKSVENTLLVISANQSPTALPVSLPDLASRLRWGESYQLVPLNDQQKIHVLQK 197

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
               R I +  ++A ++++R+ER +    + + K+D  +L     +T     E+LK
Sbjct: 198 NAHQRGIELPDEVANFLLKRLERDMKTLFEALSKLDKASLQAQRKLTIPFVKEILK 253


>gi|289664537|ref|ZP_06486118.1| hypothetical protein XcampvN_16063 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289667896|ref|ZP_06488971.1| hypothetical protein XcampmN_05173 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 233

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 16/179 (8%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117
           + L G +G+GK+ LA ++ +   ++ R          A  L   L  ++ R  V L+ ++
Sbjct: 44  LYLSGSAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103

Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173
            +     ++  LF   N       +LL TAR  P    + LPDL SRL  +  ++I LP 
Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLHSRL--SQCIRIGLPV 161

Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            DD     V+      R + +D+    +++   ER L     L+D++D  +L+    IT
Sbjct: 162 LDDAARAAVLRDRAQRRGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAKRRIT 220


>gi|150006675|ref|YP_001301418.1| chromosomal replication initiation protein [Parabacteroides
           distasonis ATCC 8503]
 gi|262384875|ref|ZP_06078007.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_33B]
 gi|298377645|ref|ZP_06987596.1| ATPase [Bacteroides sp. 3_1_19]
 gi|301308943|ref|ZP_07214888.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           20_3]
 gi|149935099|gb|ABR41796.1| chromosomal replication initiator protein DnaA [Parabacteroides
           distasonis ATCC 8503]
 gi|262293591|gb|EEY81527.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_33B]
 gi|298265348|gb|EFI07010.1| ATPase [Bacteroides sp. 3_1_19]
 gi|300832969|gb|EFK63594.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           20_3]
          Length = 465

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 33/171 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------------------STRFSNIAK 98
           + + GPSG GK+ L +    + R                            +  F N  +
Sbjct: 166 LFIFGPSGVGKTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLNFYQ 225

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           ++D +L+D      ++++  +D      FHI N +HQ    L++T+   PV        L
Sbjct: 226 NIDVLLLDD-----IQELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERL 280

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
            +RLK     ++S PD D  +K++        I I  ++  +I   +  ++
Sbjct: 281 ITRLKWGLTAELSRPDLDLRKKILKNKINHDGIMIPDEVFNFIANNVTENV 331


>gi|255016564|ref|ZP_05288690.1| chromosomal replication initiation protein [Bacteroides sp. 2_1_7]
 gi|256842198|ref|ZP_05547702.1| chromosomal replication initiator protein DnaA [Parabacteroides sp.
           D13]
 gi|256736082|gb|EEU49412.1| chromosomal replication initiator protein DnaA [Parabacteroides sp.
           D13]
          Length = 471

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 33/171 (19%)

Query: 67  VILVGPSGSGKSCLANI-------------------------WSD---KSRSTRFSNIAK 98
           + + GPSG GK+ L +                          ++D   K+ +  F N  +
Sbjct: 172 LFIFGPSGVGKTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLNFYQ 231

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           ++D +L+D      ++++  +D      FHI N +HQ    L++T+   PV        L
Sbjct: 232 NIDVLLLDD-----IQELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERL 286

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
            +RLK     ++S PD D  +K++        I I  ++  +I   +  ++
Sbjct: 287 ITRLKWGLTAELSRPDLDLRKKILKNKINHDGIMIPDEVFNFIANNVTENV 337


>gi|167586242|ref|ZP_02378630.1| hypothetical protein BuboB_12938 [Burkholderia ubonensis Bu]
          Length = 244

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG+S  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 46  PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             +DTQ   LF++ N +  + SS  + A            DL +RL    V  +S P D 
Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L  
Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223

Query: 237 EVL 239
            +L
Sbjct: 224 RML 226


>gi|256822898|ref|YP_003146861.1| DnaA regulatory inactivator Hda [Kangiella koreensis DSM 16069]
 gi|256796437|gb|ACV27093.1| DnaA regulatory inactivator Hda [Kangiella koreensis DSM 16069]
          Length = 229

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%)

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
           T +F++ N + +   S L+T    P    + L DL SRL A  +  I   +D+  EK+I+
Sbjct: 112 TAIFNLYNQLKEQGKSFLITGLNAPSQLALELKDLKSRLSAMFIYNIKPLNDE--EKLIL 169

Query: 184 --KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             +   ++ + +  ++A Y++ R +R L     ++DK+D  +L     +T     EVL
Sbjct: 170 LQRKAEEKGLELSNEVAHYLLARQQRDLPTLLGILDKLDQASLQAKRKLTIPFIKEVL 227


>gi|307728542|ref|YP_003905766.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1003]
 gi|307583077|gb|ADN56475.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1003]
          Length = 247

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 4/184 (2%)

Query: 65  RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121
           R   + G +GSG++ L  A +        RF+    SL +   D R  +  ++D D L  
Sbjct: 47  RTFYVWGEAGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSA 106

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                +F++ N +  + +S L+     P        DL +RL    V  ++   D+    
Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVATGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEAKAA 166

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           V+ +   +R I +   + AY++    R +     L+D +D  +L +   +T  L   +L 
Sbjct: 167 VLKRAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLA 226

Query: 241 ETQQ 244
              Q
Sbjct: 227 SPAQ 230


>gi|88859787|ref|ZP_01134427.1| putative regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas tunicata D2]
 gi|88818804|gb|EAR28619.1| putative regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas tunicata D2]
          Length = 236

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 14/176 (7%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLL 119
           L G + SGKS L       ++    S I  S+  I+         +++   V ++D+ L+
Sbjct: 52  LCGLADSGKSHLLYATCVYAQERGLSTILLSMKEIIGLEPSMLDGLESLSVVCIDDLHLI 111

Query: 120 DFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SLPDD 175
             +   +  +F+  N  ++ D  LL+ +   P    + LPDL SRLK  T  +I S+ DD
Sbjct: 112 AGHPNWERAMFNFYNRFNEPDKLLLVASDLLPDMITIQLPDLESRLKWGTTFQIRSMSDD 171

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           D  E  +VK    R + +  + A +++ R+ R +     ++DK+D+ ++ +   +T
Sbjct: 172 DKAE-ALVKRAKMRGLELSIECARFLLTRLSRDMRALLDVLDKLDHASMVQQRKLT 226


>gi|120553881|ref|YP_958232.1| chromosomal replication initiator, DnaA [Marinobacter aquaeolei
           VT8]
 gi|120323730|gb|ABM18045.1| regulatory inactivation of DnaA Hda protein [Marinobacter aquaeolei
           VT8]
          Length = 232

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 73/154 (47%), Gaps = 12/154 (7%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDI 116
           VV++ G S +GKS L      +S     + +  S+  +L         +D+   + L+D+
Sbjct: 45  VVVICGDSDTGKSHLLQAICHESEQMGKTAVCISIVELLPFGPDALAGLDSHDVICLDDL 104

Query: 117 DLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +    +   +  +FH+ N +   +  L+++    P S    L DL SRL    ++++ + 
Sbjct: 105 EHAAADPGWEEAVFHLYNRVLDRNGLLVVSLSEVPASLPFGLADLGSRLAHGLLIQLGVY 164

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
            D+  +++++     R + + + +A +I++R  R
Sbjct: 165 RDEDRQRILMARAEQRGLVMSEDVAGFIMRRAPR 198


>gi|114319679|ref|YP_741362.1| regulatory inactivation of DnaA Hda protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226073|gb|ABI55872.1| regulatory inactivation of DnaA Hda protein [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 245

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 14/202 (6%)

Query: 38  ISRDDLLVHSAIEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96
           I+  D  V  A +QA+  +  +   +  R++ L G    GKS L      ++    F   
Sbjct: 25  IASLDSFVAGANQQALDAVRRAAMGFGDRLLFLYGQGPVGKSHLLQAACREAGERGFKAA 84

Query: 97  AKSLDSILIDTRKPVL--LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMT 143
              L+         VL  +E +DLL  +D Q+           F++ N        ++++
Sbjct: 85  YLPLNEFQGMPPGSVLAGMESMDLLALDDLQVLAGEADWEEHFFYLFNRTRASGGHMILS 144

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           A   PV   + LPDL SRL+    +++   DD    + +    A R + +      +++ 
Sbjct: 145 ADRRPVDLSLVLPDLASRLQWGLTLRLEPLDDVGKLQGLQARAAARGLELPDDTGRFLLS 204

Query: 204 RMERSLVFAEKLVDKMDNLALS 225
           R  R L    +L+D++D  +L+
Sbjct: 205 RYARDLGGLFQLLDRLDGASLA 226


>gi|325524974|gb|EGD02898.1| DnaA regulatory inactivator Hda [Burkholderia sp. TJI49]
          Length = 244

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG+S  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 46  PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             +DTQ   LF++ N +  + SS  + A            DL +RL    V  +S P D 
Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L  
Sbjct: 164 GKIDVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223

Query: 237 EVL 239
            +L
Sbjct: 224 RML 226


>gi|254253159|ref|ZP_04946477.1| hypothetical protein BDAG_02411 [Burkholderia dolosa AUO158]
 gi|124895768|gb|EAY69648.1| hypothetical protein BDAG_02411 [Burkholderia dolosa AUO158]
          Length = 259

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 4/181 (2%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG+S  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 61  PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 120

Query: 120 -DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D     LF++ N +  + SS  + A            DL +RL    V  +S P D   
Sbjct: 121 SDAQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGK 180

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L   +
Sbjct: 181 IDVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRM 240

Query: 239 L 239
           L
Sbjct: 241 L 241


>gi|261868685|ref|YP_003256607.1| DnaA regulatory inactivator Hda [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391763|ref|ZP_06636097.1| DnaA regulatory inactivator Hda [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|261414017|gb|ACX83388.1| DnaA regulatory inactivator Hda [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|290952297|gb|EFE02416.1| DnaA regulatory inactivator Hda [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 27/189 (14%)

Query: 71  GPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND 123
           G  GSGKS L     + +  + R   +  + K+          P +LE++   D++  +D
Sbjct: 51  GNRGSGKSHLLKAICHHYLTQQRPALYVPLNKA------QYFSPAVLENLERQDVVCLDD 104

Query: 124 TQ-----------LFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            Q           +F +IN I +   +LL M A   P +    LPDL SRL    V ++ 
Sbjct: 105 VQEVIGNAEWELAIFDLINRIRETGKTLLLMGADQSPANLAARLPDLHSRLTWGEVYQL- 163

Query: 172 LPDDDFLEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +P DD  +  +++  A  R I +  + A ++ +R+ER +    + ++K+D  +L     +
Sbjct: 164 MPLDDAQKIAVLQENAHQRGIELPDETANFLFKRLERDMKTLFEALEKLDQASLQAQRKL 223

Query: 231 TRSLAAEVL 239
           T     E+L
Sbjct: 224 TIPFVKEIL 232


>gi|121634846|ref|YP_975091.1| hypothetical protein NMC1040 [Neisseria meningitidis FAM18]
 gi|161869962|ref|YP_001599131.1| DnaA regulatory inactivator Hda [Neisseria meningitidis 053442]
 gi|120866552|emb|CAM10302.1| hypothetical protein NMC1040 [Neisseria meningitidis FAM18]
 gi|161595515|gb|ABX73175.1| DnaA-related protein [Neisseria meningitidis 053442]
          Length = 243

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120
            + + + G  G+GKS L   W   +++      A  +D+    L D         +D ++
Sbjct: 57  GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 114

Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              N+ Q  LF I N         L+    +     V   DL +R+    V ++    D 
Sbjct: 115 KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 174

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
                +  M A RQ+ +D ++  Y+++   R +     ++D +DN A++ G  IT  L  
Sbjct: 175 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 234

Query: 237 EVLKETQ 243
           ++LK+ +
Sbjct: 235 QLLKQQE 241


>gi|52842998|ref|YP_096797.1| DnaA-like family protein [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52630109|gb|AAU28850.1| DnaA-like family protein [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 245

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 100/195 (51%), Gaps = 26/195 (13%)

Query: 65  RVVILVGPSGSGKS-----CLANIWSDKSRSTRFSNIA-------KSLDSILIDTRKPVL 112
           R++ L GP GSGKS     C   I  + ++S  +  +A       +S++ +  + +  + 
Sbjct: 57  RLLYLWGPKGSGKSHLLQACCQAI--NLTQSAIYLPLAFLKEWGPQSIEGL--EDQTLIC 112

Query: 113 LEDIDLLDFNDTQ----LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATV 167
           ++DI+ +  ND+     LFH+ N I   + SLL+ +    P+   + L DL SRL    V
Sbjct: 113 IDDINTI-ANDSAWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRLSWGLV 171

Query: 168 VKISLPDDDFLEKV-IVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           ++++  +DD  EK+  +KM A ++ F + + +  +++ R  R++    ++++++D+ +  
Sbjct: 172 IQLNELNDD--EKINTLKMRAAKRGFELPESVGHFLLNRCSRNMHDLYEILNQLDDASWE 229

Query: 226 RGMGITRSLAAEVLK 240
               IT      +LK
Sbjct: 230 AHRKITIPFVKNILK 244


>gi|218768138|ref|YP_002342650.1| DnaA regulatory inactivator Hda [Neisseria meningitidis Z2491]
 gi|121052146|emb|CAM08463.1| hypothetical protein NMA1279 [Neisseria meningitidis Z2491]
 gi|254671090|emb|CBA08030.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|319410380|emb|CBY90734.1| DnaA-homolog protein Hda [Neisseria meningitidis WUE 2594]
          Length = 243

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120
            + + + G  G+GKS L   W   +++      A  +D+    L D         +D ++
Sbjct: 57  GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 114

Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              N+ Q  LF I N         L+    +     V   DL +R+    V ++    D 
Sbjct: 115 KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 174

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
                +  M A RQ+ +D ++  Y+++   R +     ++D +DN A++ G  IT  L  
Sbjct: 175 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 234

Query: 237 EVLKETQ 243
           ++LK+ +
Sbjct: 235 QLLKQQE 241


>gi|254673821|emb|CBA09561.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 249

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120
            + + + G  G+GKS L   W   +++      A  +D+    L D         +D ++
Sbjct: 63  GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 120

Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              N+ Q  LF I N         L+    +     V   DL +R+    V ++    D 
Sbjct: 121 KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 180

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
                +  M A RQ+ +D ++  Y+++   R +     ++D +DN A++ G  IT  L  
Sbjct: 181 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 240

Query: 237 EVLKETQ 243
           ++LK+ +
Sbjct: 241 QLLKQQE 247


>gi|260913124|ref|ZP_05919606.1| DnaA regulatory inactivator Hda [Pasteurella dagmatis ATCC 43325]
 gi|260632711|gb|EEX50880.1| DnaA regulatory inactivator Hda [Pasteurella dagmatis ATCC 43325]
          Length = 232

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 88/183 (48%), Gaps = 13/183 (7%)

Query: 71  GPSGSGKSCLANIWSD----KSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G   SGKS L    S+    + R   +  + KS     ++L  ++ ++ V L+D+  +  
Sbjct: 49  GEQSSGKSHLLKAISNHFFLQQRPAIYVPLEKSCYFSPAVLENLEYQQLVCLDDLHTVIG 108

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I +   +LL+ +A   P +  V LPDL SRL+   + +++   D  
Sbjct: 109 NDEWELAIFDLFNRIKEIGKTLLLISANQSPTALPVKLPDLASRLRWGEIYQLTPLTDIQ 168

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             +V+ +   +R I +  + + ++++R+ER +      + ++D  +L     +T     E
Sbjct: 169 KIQVLQQHAKERGIELPDETSNFLLKRLERDMQTLLDALTQLDQASLQAQRKLTIPFVKE 228

Query: 238 VLK 240
           +LK
Sbjct: 229 ILK 231


>gi|225023936|ref|ZP_03713128.1| hypothetical protein EIKCOROL_00802 [Eikenella corrodens ATCC
           23834]
 gi|224942961|gb|EEG24170.1| hypothetical protein EIKCOROL_00802 [Eikenella corrodens ATCC
           23834]
          Length = 219

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 5/170 (2%)

Query: 67  VILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V + GP+G+GKS L    A        S R+ N A      +      + L+ ID LD +
Sbjct: 38  VYVWGPAGAGKSHLLQAWAAQAEAAGLSARYLNAANEPLHEMPPAGCHLALDQIDSLDAD 97

Query: 123 D-TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              +LF+  N I Q     L+   + P        DL +R+    V +I    D+     
Sbjct: 98  GQAELFNFCNHIRQSRQGALLIGASVPPPRLAVREDLRTRMGYCLVYEIKPLSDEEKIAA 157

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           +V+    RQI I   +  Y++    R +     ++D +D  AL+    IT
Sbjct: 158 LVEAARRRQIRISPDIFRYLLHHWRRDIGSLMAMLDALDRHALASHRPIT 207


>gi|52425933|ref|YP_089070.1| DNA replication initiation factor [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307985|gb|AAU38485.1| DnaA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 232

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 93/184 (50%), Gaps = 17/184 (9%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGKS L    S++    +R   +  ++KS     ++L  ++ +  V L+D+ L+  
Sbjct: 49  GAEGSGKSHLLKAVSNQFLLQNRPAIYVPLSKSQYFSPAVLENLEYQDAVCLDDLQLVVG 108

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           N+     +F + N I + +++LL+ +A   P +  + LPDL SRL    +  +++  D+ 
Sbjct: 109 NEEWEIAIFDLFNRIKEKENTLLLISANQSPNALPIKLPDLASRLTWGEIYHLNVFTDE- 167

Query: 178 LEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
            EK++V  +   +R I +  + A ++++R++R +      + K+D  +L     +T    
Sbjct: 168 -EKILVLQRNAHERGIELPDETANFLLKRLDRDMHTLFDALLKLDKASLQAQRKLTIPFV 226

Query: 236 AEVL 239
            E L
Sbjct: 227 KETL 230


>gi|59801246|ref|YP_207958.1| hypothetical protein NGO0841 [Neisseria gonorrhoeae FA 1090]
 gi|194098531|ref|YP_002001593.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae NCCP11945]
 gi|239998920|ref|ZP_04718844.1| hypothetical protein Ngon3_05471 [Neisseria gonorrhoeae 35/02]
 gi|240014169|ref|ZP_04721082.1| hypothetical protein NgonD_05917 [Neisseria gonorrhoeae DGI18]
 gi|240016604|ref|ZP_04723144.1| hypothetical protein NgonFA_05473 [Neisseria gonorrhoeae FA6140]
 gi|240112839|ref|ZP_04727329.1| hypothetical protein NgonM_04542 [Neisseria gonorrhoeae MS11]
 gi|240115595|ref|ZP_04729657.1| hypothetical protein NgonPID1_04995 [Neisseria gonorrhoeae PID18]
 gi|240121732|ref|ZP_04734694.1| hypothetical protein NgonPI_08222 [Neisseria gonorrhoeae PID24-1]
 gi|240123447|ref|ZP_04736403.1| hypothetical protein NgonP_05800 [Neisseria gonorrhoeae PID332]
 gi|240125692|ref|ZP_04738578.1| hypothetical protein NgonSK_05633 [Neisseria gonorrhoeae SK-92-679]
 gi|240128149|ref|ZP_04740810.1| hypothetical protein NgonS_05807 [Neisseria gonorrhoeae SK-93-1035]
 gi|254493704|ref|ZP_05106875.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260440595|ref|ZP_05794411.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae DGI2]
 gi|268594762|ref|ZP_06128929.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268598915|ref|ZP_06133082.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601269|ref|ZP_06135436.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268682070|ref|ZP_06148932.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684280|ref|ZP_06151142.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686538|ref|ZP_06153400.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291043900|ref|ZP_06569616.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399108|ref|ZP_06643273.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae F62]
 gi|59718141|gb|AAW89546.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193933821|gb|ACF29645.1| DnaA-related protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512744|gb|EEH62089.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548151|gb|EEZ43569.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583046|gb|EEZ47722.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268585400|gb|EEZ50076.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268622354|gb|EEZ54754.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624564|gb|EEZ56964.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268626822|gb|EEZ59222.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291012363|gb|EFE04352.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610522|gb|EFF39632.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae F62]
 gi|317164209|gb|ADV07750.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 222

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 9/180 (5%)

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD--FNDTQ 125
           G  G+GKS L   W   +++      A  +D+    L D         +D ++   N+ Q
Sbjct: 43  GEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQ 100

Query: 126 --LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
             LF I N         L+    +     V   DL +R+    V ++    D      + 
Sbjct: 101 ALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALA 160

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            M A RQ+ +D ++  Y+++   R +     ++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 161 NMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220


>gi|115350708|ref|YP_772547.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria AMMD]
 gi|115280696|gb|ABI86213.1| Chromosomal replication initiator, DnaA [Burkholderia ambifaria
           AMMD]
          Length = 318

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 4/181 (2%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG++  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 120 PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 179

Query: 120 -DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D     LF++ N +  + SS  + A            DL +RL    V  +S P D   
Sbjct: 180 SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGK 239

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L   +
Sbjct: 240 IAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRM 299

Query: 239 L 239
           L
Sbjct: 300 L 300


>gi|34499069|ref|NP_903284.1| DnaA regulatory inactivator Hda [Chromobacterium violaceum ATCC
           12472]
 gi|34104919|gb|AAQ61276.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 224

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 13/185 (7%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---ILIDTRKP---VLLEDIDL 118
           R + L G  G GK+ L   W   + + R    A  LD     L D  +    + ++ +D 
Sbjct: 38  RFIYLWGEPGCGKTHLLQAWI--AHAERLGRAAIYLDGKGDHLPDFAREASFIAVDHVDD 95

Query: 119 LDFNDT-QLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SLPDD 175
           L  +D   LF   NS+ +  +  LLM  R  PV+  V   DL +RL    V+++ +L DD
Sbjct: 96  LAPDDQIMLFSFYNSLKEGGEGRLLMAGRKPPVALSVR-DDLRTRLGWGLVLEVKALSDD 154

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           D L   +    A+RQ+ I   +  Y++    R L     ++D +D  +L+    IT  L 
Sbjct: 155 DKL-AALRSHAANRQLSIPDDVYRYLLTHWRRDLTSLISMIDMLDRYSLALRRPITVPLV 213

Query: 236 AEVLK 240
             VL+
Sbjct: 214 KNVLQ 218


>gi|261400250|ref|ZP_05986375.1| DnaA regulatory inactivator Hda [Neisseria lactamica ATCC 23970]
 gi|313668273|ref|YP_004048557.1| hypothetical protein NLA_9620 [Neisseria lactamica ST-640]
 gi|269210054|gb|EEZ76509.1| DnaA regulatory inactivator Hda [Neisseria lactamica ATCC 23970]
 gi|313005735|emb|CBN87189.1| hypothetical protein NLA_9620 [Neisseria lactamica 020-06]
          Length = 222

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120
            + + + G  G+GKS L   W   +++      A  +D+    L D         +D ++
Sbjct: 36  GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 93

Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              N+ Q  LF I N         L+    +     V   DL +R+    V ++    D 
Sbjct: 94  KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 153

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
                +  M A RQ+ +D ++  Y+++   R +     ++D +DN A++ G  IT  L  
Sbjct: 154 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 213

Query: 237 EVLKETQ 243
           ++LK+ +
Sbjct: 214 QLLKQQE 220


>gi|296314280|ref|ZP_06864221.1| DnaA regulatory inactivator Hda [Neisseria polysaccharea ATCC
           43768]
 gi|296839079|gb|EFH23017.1| DnaA regulatory inactivator Hda [Neisseria polysaccharea ATCC
           43768]
          Length = 222

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120
            + + + G  G+GKS L   W   +++      A  +D+    L D         +D ++
Sbjct: 36  GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFETEYLAVDQVE 93

Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              N+ Q  LF I N         L+    +     V   DL +R+    V ++    D 
Sbjct: 94  KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 153

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
                +  M A RQ+ +D ++  Y+++   R +     ++D +DN A++ G  IT  L  
Sbjct: 154 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 213

Query: 237 EVLKETQ 243
           ++LK+ +
Sbjct: 214 QLLKQQE 220


>gi|15676960|ref|NP_274109.1| hypothetical protein NMB1076 [Neisseria meningitidis MC58]
 gi|254804954|ref|YP_003083175.1| DnaA related protein, truncated [Neisseria meningitidis alpha14]
 gi|304387630|ref|ZP_07369817.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ATCC 13091]
 gi|7226316|gb|AAF41471.1| DnaA-related protein [Neisseria meningitidis MC58]
 gi|254668496|emb|CBA05833.1| DnaA related protein, truncated [Neisseria meningitidis alpha14]
 gi|261392600|emb|CAX50162.1| DnaA-homolog protein Hda [Neisseria meningitidis 8013]
 gi|304338355|gb|EFM04478.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ATCC 13091]
 gi|308389233|gb|ADO31553.1| hypothetical protein NMBB_1213 [Neisseria meningitidis alpha710]
 gi|316984795|gb|EFV63753.1| dnaA regulatory inactivator Hda [Neisseria meningitidis H44/76]
 gi|325128199|gb|EGC51087.1| DnaA regulatory inactivator Hda [Neisseria meningitidis N1568]
 gi|325132068|gb|EGC54764.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M6190]
 gi|325134243|gb|EGC56891.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M13399]
 gi|325136375|gb|EGC58983.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M0579]
 gi|325138001|gb|EGC60574.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ES14902]
 gi|325140287|gb|EGC62811.1| DnaA regulatory inactivator Hda [Neisseria meningitidis CU385]
 gi|325142331|gb|EGC64743.1| DnaA regulatory inactivator Hda [Neisseria meningitidis 961-5945]
 gi|325144711|gb|EGC67008.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240013]
 gi|325198284|gb|ADY93740.1| DnaA regulatory inactivator Hda [Neisseria meningitidis G2136]
 gi|325200243|gb|ADY95698.1| DnaA regulatory inactivator Hda [Neisseria meningitidis H44/76]
 gi|325202167|gb|ADY97621.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240149]
 gi|325204119|gb|ADY99572.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240355]
 gi|325206100|gb|ADZ01553.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M04-240196]
 gi|325208079|gb|ADZ03531.1| DnaA regulatory inactivator Hda [Neisseria meningitidis NZ-05/33]
          Length = 222

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120
            + + + G  G+GKS L   W   +++      A  +D+    L D         +D ++
Sbjct: 36  GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 93

Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              N+ Q  LF I N         L+    +     V   DL +R+    V ++    D 
Sbjct: 94  KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 153

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
                +  M A RQ+ +D ++  Y+++   R +     ++D +DN A++ G  IT  L  
Sbjct: 154 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 213

Query: 237 EVLKETQ 243
           ++LK+ +
Sbjct: 214 QLLKQQE 220


>gi|170698325|ref|ZP_02889400.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria IOP40-10]
 gi|170136744|gb|EDT04997.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria IOP40-10]
          Length = 244

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG++  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 46  PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             +DTQ   LF++ N +  + SS  + A            DL +RL    V  +S P D 
Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L  
Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223

Query: 237 EVL 239
            +L
Sbjct: 224 RML 226


>gi|170732082|ref|YP_001764029.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia MC0-3]
 gi|169815324|gb|ACA89907.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia MC0-3]
          Length = 244

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG++  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 46  PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             +DTQ   LF++ N +  + SS  + A            DL +RL    V  +S P D 
Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L  
Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223

Query: 237 EVL 239
            +L
Sbjct: 224 RML 226


>gi|171320264|ref|ZP_02909320.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MEX-5]
 gi|171094493|gb|EDT39551.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MEX-5]
          Length = 244

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG++  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 46  PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             +DTQ   LF++ N +  + SS  + A            DL +RL    V  +S P D 
Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L  
Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223

Query: 237 EVL 239
            +L
Sbjct: 224 RML 226


>gi|94323531|gb|ABF17877.1| chromosomal replication initiator protein [Staphylococcus xylosus]
          Length = 455

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 5/158 (3%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147
           +++ RF    +++D +LID      ++ I   +    + FH  N +HQ +  +++++   
Sbjct: 203 NKTERFREKYRNIDVLLIDD-----IQFIQNKEQTQEEFFHTFNELHQANKQIVISSDRP 257

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P         L SR +   +V I+ PD +    ++ K   +  + I  +   YI  +++ 
Sbjct: 258 PKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIGEENLDIPTEALTYIANQIQS 317

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           ++   E  + ++   +  +G  IT  L A  LK+  Q 
Sbjct: 318 NIRELEGALTRVLAFSKLQGQPITTELTAAALKDIIQA 355


>gi|172059739|ref|YP_001807391.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MC40-6]
 gi|171992256|gb|ACB63175.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MC40-6]
          Length = 318

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 4/181 (2%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG++  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 120 PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 179

Query: 120 -DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D     LF++ N +  + SS  + A            DL +RL    V  +S P D   
Sbjct: 180 SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGK 239

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L   +
Sbjct: 240 IAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRM 299

Query: 239 L 239
           L
Sbjct: 300 L 300


>gi|134294832|ref|YP_001118567.1| DnaA regulatory inactivator Hda [Burkholderia vietnamiensis G4]
 gi|134137989|gb|ABO53732.1| Chromosomal replication initiator, DnaA [Burkholderia vietnamiensis
           G4]
          Length = 244

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG++  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 46  PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDKM 105

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             +DTQ   LF++ N +  + SS  + A            DL +RL    V  +S P D 
Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L  
Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223

Query: 237 EVL 239
            +L
Sbjct: 224 RML 226


>gi|240080794|ref|ZP_04725337.1| hypothetical protein NgonF_05711 [Neisseria gonorrhoeae FA19]
 gi|240117888|ref|ZP_04731950.1| hypothetical protein NgonPID_05407 [Neisseria gonorrhoeae PID1]
 gi|268596912|ref|ZP_06131079.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268603592|ref|ZP_06137759.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268550700|gb|EEZ45719.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268587723|gb|EEZ52399.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
          Length = 222

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 9/180 (5%)

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD--FNDTQ 125
           G  G+GKS L   W   +++      A  +D+    L D         +D ++   N+ Q
Sbjct: 43  GEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQ 100

Query: 126 --LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
             LF I N         L+    +     V   DL +R+    V ++    D      + 
Sbjct: 101 ALLFSIFNRFRNNGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDPEKIDALA 160

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            M A RQ+ +D ++  Y+++   R +     ++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 161 NMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220


>gi|254246245|ref|ZP_04939566.1| hypothetical protein BCPG_00978 [Burkholderia cenocepacia PC184]
 gi|124871021|gb|EAY62737.1| hypothetical protein BCPG_00978 [Burkholderia cenocepacia PC184]
          Length = 247

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG++  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 49  PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 108

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             +DTQ   LF++ N +  + SS  + A            DL +RL    V  +S P D 
Sbjct: 109 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 166

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L  
Sbjct: 167 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 226

Query: 237 EVL 239
            +L
Sbjct: 227 RML 229


>gi|325106587|ref|YP_004267655.1| Chromosomal replication initiator protein dnaA [Planctomyces
           brasiliensis DSM 5305]
 gi|324966855|gb|ADY57633.1| Chromosomal replication initiator protein dnaA [Planctomyces
           brasiliensis DSM 5305]
          Length = 568

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 14/169 (8%)

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQ 135
             AN ++   R     +  +   SI +     +L++D+D LD       +  H I  +  
Sbjct: 296 AFANYYTKALREKSLPSFRRRFRSIDV-----LLVDDVDFLDSKKGIQEEFCHTIQELLA 350

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           Y   +++ A   P        DLCSR  A  V ++  PD+   ++++ +      + I  
Sbjct: 351 YRRQIVLAADRHPRMLTNIRQDLCSRFLAGLVTRLEAPDEQSRQEIVRQQAKKVGLPISP 410

Query: 196 KLAAYIVQRMERS---LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   YI ++  RS   L+ A   +    +L   R +G+T +   EVLK+
Sbjct: 411 EAVDYISRKFTRSARELLGAVNCLQTYHHLT-GRAIGVTAT--REVLKD 456


>gi|229846871|ref|ZP_04466978.1| DNA replication initiation factor [Haemophilus influenzae 7P49H1]
 gi|229810360|gb|EEP46079.1| DNA replication initiation factor [Haemophilus influenzae 7P49H1]
          Length = 231

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSD----KSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S+    K R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             KV+      R   +  + A +++ R+ R +    K +D +D  +L     +T     E
Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNLTIPFVKE 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|107021836|ref|YP_620163.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia AU 1054]
 gi|116688783|ref|YP_834406.1| hypothetical protein Bcen2424_0760 [Burkholderia cenocepacia
           HI2424]
 gi|105892025|gb|ABF75190.1| Chromosomal replication initiator, DnaA [Burkholderia cenocepacia
           AU 1054]
 gi|116646872|gb|ABK07513.1| Chromosomal replication initiator, DnaA [Burkholderia cenocepacia
           HI2424]
          Length = 261

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG++  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 63  PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 122

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             +DTQ   LF++ N +  + SS  + A            DL +RL    V  +S P D 
Sbjct: 123 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 180

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L  
Sbjct: 181 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 240

Query: 237 EVL 239
            +L
Sbjct: 241 RML 243


>gi|170691341|ref|ZP_02882506.1| DnaA regulatory inactivator Hda [Burkholderia graminis C4D1M]
 gi|170143546|gb|EDT11709.1| DnaA regulatory inactivator Hda [Burkholderia graminis C4D1M]
          Length = 247

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 12/188 (6%)

Query: 65  RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID----L 118
           R   + G +GSG++ L  A +        RF+    SL +   D R  V L  ID    L
Sbjct: 47  RTFYIWGEAGSGRTHLLQALVHEAPRGHARFAGPQSSLAAFSFDPR--VALYAIDDCDGL 104

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDF 177
                  +F++ N +  + +S L+     P        DL +RL    V  ++ LPD+  
Sbjct: 105 SAAQQVAVFNLFNEVRAHPTSALVATGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEG- 163

Query: 178 LEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
            +  ++K  A +R I +   + AY++    R +     L+D +D  +L +   +T  L  
Sbjct: 164 -KAAVLKHAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 222

Query: 237 EVLKETQQ 244
            +L    Q
Sbjct: 223 TMLASPGQ 230


>gi|119713116|gb|ABL97185.1| putative DNA replication factor [uncultured marine bacterium
           EB0_49D07]
          Length = 234

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 30/240 (12%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH-SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           N   QL F F      S D        IE   RL D   S  +  +I+ G  GSGKS L 
Sbjct: 2   NNPTQLIFPFQVNQKASFDSFFCSPDNIELMSRLTDLASSENTDELIINGAEGSGKSFLM 61

Query: 82  N-IWSDKSRSTR-----------------FSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
             I ++ S S +                 F N+A SLD++ ID  + +L ++       +
Sbjct: 62  QAICNELSSSGKQFAFIPMNKAINMGVEIFQNLA-SLDAVCIDDLQLILSKEEW-----E 115

Query: 124 TQLFHIINSIHQYDSSLLMT-ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
           T LF++IN   Q   SL+++      +     LPDL SR+K    +K+    D+ L + +
Sbjct: 116 TALFNLINQCQQSYCSLILSFGGNQSLEDSTQLPDLLSRIKRMEFMKLQAVLDESLNQAL 175

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +     I I+K    +++    R       LVD + +L   +   + R +   ++KET
Sbjct: 176 GFVSQQLDINIEKAEIEFLLNHQTREFSI---LVDNLISLD-KQAASLKRKITIPLIKET 231


>gi|314934960|ref|ZP_07842319.1| DNA replication initiator protein, ATPase [Staphylococcus caprae
           C87]
 gi|313652890|gb|EFS16653.1| DNA replication initiator protein, ATPase [Staphylococcus caprae
           C87]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 7/183 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           PS  VI           + +I  +++ +  F    +++D +LID      ++ I   +  
Sbjct: 176 PSAKVIYTSSEKFTNEFIKSIRDNETEA--FREKYRNIDVLLIDD-----IQFIQNKEQT 228

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N +HQ +  +++++   P         L SR +   +V I+ PD +    ++
Sbjct: 229 QEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAIL 288

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            K   +  + I  +   YI  +++ ++   E  + ++   +  +G  IT  LAAE LK+ 
Sbjct: 289 QKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDI 348

Query: 243 QQC 245
            Q 
Sbjct: 349 IQA 351


>gi|285016822|ref|YP_003374533.1| chromosomal replication initiator protein DnaA [Xanthomonas
           albilineans GPE PC73]
 gi|283472040|emb|CBA14547.1| probable chromosomal replication initiator protein dnaa
           [Xanthomonas albilineans]
          Length = 445

 Score = 43.1 bits (100), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCL----ANIWSDKSRSTR---------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     N   +++ + R         FS + ++L    +D  K    
Sbjct: 146 LLLYGSTGLGKTHLMFAAGNAMREQNPNARVMYLRSEQFFSAMIRALQEKTMDQFKRQFQ 205

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 206 QVDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 265

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I  ++A  I ++M  ++   E  ++ +   A
Sbjct: 266 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDEVAFLIAKKMRSNVRDLEGALNTLAARA 325

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 326 NFTGRAITTEFAQETLRD 343


>gi|254522116|ref|ZP_05134171.1| DnaA regulatory inactivator Hda [Stenotrophomonas sp. SKA14]
 gi|219719707|gb|EED38232.1| DnaA regulatory inactivator Hda [Stenotrophomonas sp. SKA14]
          Length = 235

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 16/191 (8%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTRF----------SNIAKSLDSILIDTRKPVLLED 115
           V L G +G+GK+  A  + S   ++ R             +  +LD +  ++R+ V L+ 
Sbjct: 44  VYLEGAAGTGKTHQALAMCSSAEQAGRLPTYVPLASAAGRVRAALDGL--ESRELVALDG 101

Query: 116 IDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +D +     ++  LF   N       ++L TA+  P   G+ LPDL SRL     V +  
Sbjct: 102 LDEVAGSREDEIALFDFHNRARAAGVTVLYTAQKAPGELGLLLPDLRSRLGQCVRVLLQP 161

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            D++    V+ +    R + ID+    +++    R L     L+D +D  +L+    IT 
Sbjct: 162 LDEEGRAAVLRERALRRGLAIDEAAIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITV 221

Query: 233 SLAAEVLKETQ 243
               +VL+E +
Sbjct: 222 PFLRQVLEEGR 232


>gi|223043484|ref|ZP_03613530.1| chromosomal replication initiator protein DnaA [Staphylococcus
           capitis SK14]
 gi|222443273|gb|EEE49372.1| chromosomal replication initiator protein DnaA [Staphylococcus
           capitis SK14]
          Length = 450

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 7/183 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           PS  VI           + +I  +++ +  F    +++D +LID      ++ I   +  
Sbjct: 176 PSAKVIYTSSEKFTNEFIKSIRDNETEA--FREKYRNIDVLLIDD-----IQFIQNKEQT 228

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N +HQ +  +++++   P         L SR +   +V I+ PD +    ++
Sbjct: 229 QEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAIL 288

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            K   +  + I  +   YI  +++ ++   E  + ++   +  +G  IT  LAAE LK+ 
Sbjct: 289 QKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDI 348

Query: 243 QQC 245
            Q 
Sbjct: 349 IQA 351


>gi|126668638|ref|ZP_01739590.1| ABC transporter-like protein [Marinobacter sp. ELB17]
 gi|126626897|gb|EAZ97542.1| ABC transporter-like protein [Marinobacter sp. ELB17]
          Length = 274

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 13/182 (7%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128
           ++GP+G+GK+ + +I + K+R    S    S  ++L  +   +    I    F    +F 
Sbjct: 62  IIGPNGAGKTTMMDIITGKTRPDTGSVWFGSRHNLLTKSEPEIASLGIGR-KFQKPTVFE 120

Query: 129 IINSIHQYDSSLLMTARTFP----VSWGVC-------LPDLCSR-LKAATVVKISLPDDD 176
            +      + ++    R  P    V  G C       L  +  R L+AA    +S     
Sbjct: 121 ALTVFENLELAMAADKRVLPTLTAVLNGECRDRIDEVLETIGLRNLRAALAGILSHGQKQ 180

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
           +LE  ++ M   R + +D+ +A    Q MER+      L  K   + +   MG  RS+A 
Sbjct: 181 WLEIGMLLMQKPRLLLVDEPVAGMTEQEMERTAELLTTLAGKQSVVVVEHDMGFVRSIAR 240

Query: 237 EV 238
           +V
Sbjct: 241 KV 242


>gi|215404512|ref|ZP_03416693.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis 02_1987]
 gi|215412336|ref|ZP_03421096.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis 94_M4241A]
 gi|215446814|ref|ZP_03433566.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis T85]
 gi|289746356|ref|ZP_06505734.1| conserved hypothetical protein [Mycobacterium tuberculosis
          02_1987]
 gi|289758694|ref|ZP_06518072.1| ABC transporter [Mycobacterium tuberculosis T85]
 gi|294994326|ref|ZP_06800017.1| putative glutamine-transport ATP-binding protein ABC transporter
          [Mycobacterium tuberculosis 210]
 gi|298526037|ref|ZP_07013446.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|289686884|gb|EFD54372.1| conserved hypothetical protein [Mycobacterium tuberculosis
          02_1987]
 gi|289714258|gb|EFD78270.1| ABC transporter [Mycobacterium tuberculosis T85]
 gi|298495831|gb|EFI31125.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|326904178|gb|EGE51111.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis W-148]
          Length = 330

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 7/67 (10%)

Query: 37 GISRDDLLV-HSAIEQAVRLID--SWPSWPSRVVILVGPSGSGK----SCLANIWSDKSR 89
          G++  DL+V +S+   AVR ID  S    P  +VIL+GPSG GK    SCL  I   KS 
Sbjct: 3  GLTISDLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSCLGGILRPKSG 62

Query: 90 STRFSNI 96
          S +F ++
Sbjct: 63 SIKFDDV 69


>gi|15609701|ref|NP_217080.1| glutamine-transport ATP-binding protein ABC transporter GlnQ
          [Mycobacterium tuberculosis H37Rv]
 gi|15842102|ref|NP_337139.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis
          CDC1551]
 gi|31793746|ref|NP_856239.1| glutamine-transport ATP-binding protein ABC transporter GlnQ
          [Mycobacterium bovis AF2122/97]
 gi|121638448|ref|YP_978672.1| putative glutamine-transport ATP-binding protein ABC transporter
          glnQ [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662403|ref|YP_001283926.1| glutamine ABC transporter ATP-binding protein GlnQ [Mycobacterium
          tuberculosis H37Ra]
 gi|148823759|ref|YP_001288513.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis F11]
 gi|167968826|ref|ZP_02551103.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis H37Ra]
 gi|215431521|ref|ZP_03429440.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis EAS054]
 gi|219558567|ref|ZP_03537643.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis T17]
 gi|224990942|ref|YP_002645629.1| putative glutamine-transport ATP-binding protein ABC transporter
          [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254232683|ref|ZP_04926010.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis C]
 gi|254366767|ref|ZP_04982810.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis str. Haarlem]
 gi|254551614|ref|ZP_05142061.1| putative glutamine-transport ATP-binding protein ABC transporter
          [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187578|ref|ZP_05765052.1| putative glutamine-transport ATP-binding protein ABC transporter
          [Mycobacterium tuberculosis CPHL_A]
 gi|260201691|ref|ZP_05769182.1| putative glutamine-transport ATP-binding protein ABC transporter
          [Mycobacterium tuberculosis T46]
 gi|260205885|ref|ZP_05773376.1| putative glutamine-transport ATP-binding protein ABC transporter
          [Mycobacterium tuberculosis K85]
 gi|289444100|ref|ZP_06433844.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis T46]
 gi|289448213|ref|ZP_06437957.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis CPHL_A]
 gi|289570733|ref|ZP_06450960.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis T17]
 gi|289575272|ref|ZP_06455499.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis K85]
 gi|289754682|ref|ZP_06514060.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis EAS054]
 gi|306776838|ref|ZP_07415175.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu001]
 gi|306780602|ref|ZP_07418939.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu002]
 gi|306785365|ref|ZP_07423687.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu003]
 gi|306789965|ref|ZP_07428287.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu004]
 gi|306794045|ref|ZP_07432347.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu005]
 gi|306798444|ref|ZP_07436746.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu006]
 gi|306804323|ref|ZP_07440991.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu008]
 gi|306807638|ref|ZP_07444306.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu007]
 gi|306969839|ref|ZP_07482500.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu009]
 gi|306972952|ref|ZP_07485613.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu010]
 gi|307080663|ref|ZP_07489833.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu011]
 gi|307085250|ref|ZP_07494363.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu012]
 gi|54040539|sp|P63402|Y2593_MYCBO RecName: Full=Uncharacterized ABC transporter ATP-binding protein
          Mb2593
 gi|54042820|sp|P63401|Y2564_MYCTU RecName: Full=Uncharacterized ABC transporter ATP-binding protein
          Rv2564/MT2640
 gi|1460076|emb|CAB01051.1| PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER
          GLNQ [Mycobacterium tuberculosis H37Rv]
 gi|13882384|gb|AAK46953.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis
          CDC1551]
 gi|31619340|emb|CAD94778.1| PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER
          GLNQ [Mycobacterium bovis AF2122/97]
 gi|121494096|emb|CAL72574.1| Probable glutamine-transport ATP-binding protein ABC transporter
          glnQ [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601742|gb|EAY60752.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis C]
 gi|134152278|gb|EBA44323.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis str. Haarlem]
 gi|148506555|gb|ABQ74364.1| glutamine ABC transporter ATP-binding protein GlnQ [Mycobacterium
          tuberculosis H37Ra]
 gi|148722286|gb|ABR06911.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis F11]
 gi|224774055|dbj|BAH26861.1| putative glutamine-transport ATP-binding protein ABC transporter
          [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289417019|gb|EFD14259.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis T46]
 gi|289421171|gb|EFD18372.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis CPHL_A]
 gi|289539703|gb|EFD44281.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis K85]
 gi|289544487|gb|EFD48135.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis T17]
 gi|289695269|gb|EFD62698.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis EAS054]
 gi|308214764|gb|EFO74163.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu001]
 gi|308326537|gb|EFP15388.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu002]
 gi|308329958|gb|EFP18809.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu003]
 gi|308333575|gb|EFP22426.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu004]
 gi|308337602|gb|EFP26453.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu005]
 gi|308341268|gb|EFP30119.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu006]
 gi|308345959|gb|EFP34810.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu007]
 gi|308349075|gb|EFP37926.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu008]
 gi|308352648|gb|EFP41499.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu009]
 gi|308357643|gb|EFP46494.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu010]
 gi|308361585|gb|EFP50436.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu011]
 gi|308365204|gb|EFP54055.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis SUMu012]
 gi|323718837|gb|EGB27993.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis CDC1551A]
          Length = 330

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 7/67 (10%)

Query: 37 GISRDDLLV-HSAIEQAVRLID--SWPSWPSRVVILVGPSGSGK----SCLANIWSDKSR 89
          G++  DL+V +S+   AVR ID  S    P  +VIL+GPSG GK    SCL  I   KS 
Sbjct: 3  GLTISDLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSCLGGILRPKSG 62

Query: 90 STRFSNI 96
          S +F ++
Sbjct: 63 SIKFDDV 69


>gi|253798355|ref|YP_003031356.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis KZN 1435]
 gi|289553646|ref|ZP_06442856.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis KZN 605]
 gi|297635174|ref|ZP_06952954.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis KZN 4207]
 gi|297732166|ref|ZP_06961284.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis KZN R506]
 gi|313659500|ref|ZP_07816380.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis KZN V2475]
 gi|253319858|gb|ACT24461.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis KZN 1435]
 gi|289438278|gb|EFD20771.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis KZN 605]
 gi|328458125|gb|AEB03548.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis KZN 4207]
          Length = 330

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 7/67 (10%)

Query: 37 GISRDDLLV-HSAIEQAVRLID--SWPSWPSRVVILVGPSGSGK----SCLANIWSDKSR 89
          G++  DL+V +S+   AVR ID  S    P  +VIL+GPSG GK    SCL  I   KS 
Sbjct: 3  GLTISDLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSCLGGILRPKSG 62

Query: 90 STRFSNI 96
          S +F ++
Sbjct: 63 SIKFDDV 69


>gi|160872042|ref|ZP_02062174.1| chromosomal replication initiator protein DnaA [Rickettsiella
           grylli]
 gi|159120841|gb|EDP46179.1| chromosomal replication initiator protein DnaA [Rickettsiella
           grylli]
          Length = 464

 Score = 42.7 bits (99), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 11/152 (7%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
           F    +SLD++LID        DI      D +  + FH  N++ +    +++T   +P 
Sbjct: 219 FKTYYRSLDALLID--------DIQFFAGKDRSQEEFFHTFNTLLESQQQIVLTCDRYPK 270

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L SRL     + I  PD +    +++      +I + +++A +I +R+  ++
Sbjct: 271 EMSGVEERLKSRLGWGLTIAIEPPDLETRVAILISKAEQTKISLPQEVAFFIAKRIHSNV 330

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              E ++ ++   A   G+ IT  L  E +K+
Sbjct: 331 RELEGVLKRVVAYAQFTGLQITLELVREAIKD 362


>gi|304321315|ref|YP_003854958.1| hypothetical protein PB2503_08804 [Parvularcula bermudensis
           HTCC2503]
 gi|303300217|gb|ADM09816.1| hypothetical protein PB2503_08804 [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 15/189 (7%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-VLLEDIDLLDFNDT 124
           + +L G  G GKS LA  +  +  +T  +    +L  +   +  P V+++D D       
Sbjct: 49  LAVLWGGYGVGKSRLAAEFGRRVGATFLAG--PTLSGLPPRSALPLVVIDDADQASLG-- 104

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWG-----VCLPDLCSRLKAATVVKISLPDDDFLE 179
            LF  +N+        L+  R+ P  WG       + DL SRL   TV+++  P+   + 
Sbjct: 105 ALFAYVNAALSRPQPTLVIGRSRPGRWGGGEDETGVQDLRSRLMGGTVIELDPPEQTAII 164

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT-RSLAAEV 238
           +V+     D  + +   L      R+ R  V    +      LA   G G T RSL  + 
Sbjct: 165 QVLAIALRDAGLTVPPALIEETGGRLCRRFVAPLTIAATARRLA---GPGKTPRSLLEQA 221

Query: 239 LKET-QQCD 246
           LK   +QC 
Sbjct: 222 LKSNPEQCG 230


>gi|307544884|ref|YP_003897363.1| K10763 DnaA-homolog protein [Halomonas elongata DSM 2581]
 gi|307216908|emb|CBV42178.1| K10763 DnaA-homolog protein [Halomonas elongata DSM 2581]
          Length = 233

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%)

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
           +  LFH  N +      L++ A   P    V LPDL SRL      ++   DD    + +
Sbjct: 115 EEALFHAFNRLRDDGRRLIVAASAPPRQLAVTLPDLASRLTWGMTFQVPGLDDQGRLEAL 174

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
                 R + +  ++A YI+ R  R L    ++++ +D  +LS
Sbjct: 175 RLRAGGRGMELPDEVARYILHRGPRRLEALFEVLETLDRASLS 217


>gi|215427959|ref|ZP_03425878.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis T92]
 gi|289751183|ref|ZP_06510561.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis T92]
 gi|289691770|gb|EFD59199.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis T92]
          Length = 227

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 7/67 (10%)

Query: 37 GISRDDLLV-HSAIEQAVRLID--SWPSWPSRVVILVGPSGSGK----SCLANIWSDKSR 89
          G++  DL+V +S+   AVR ID  S    P  +VIL+GPSG GK    SCL  I   KS 
Sbjct: 3  GLTISDLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSCLGGILRPKSG 62

Query: 90 STRFSNI 96
          S +F ++
Sbjct: 63 SIKFDDV 69


>gi|212635540|ref|YP_002312065.1| DNA replication initiation factor [Shewanella piezotolerans WP3]
 gi|212557024|gb|ACJ29478.1| DNA replication factor, putative [Shewanella piezotolerans WP3]
          Length = 236

 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 23/193 (11%)

Query: 66  VVILVGPSGSGKSCLANIW----SDKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDLL 119
            V + GP  SG++ L +      +D +RS+ +    I  S+   L++      LE IDL+
Sbjct: 48  AVFIWGPEKSGRTHLMHAACAHANDLNRSSFYIPLGIHASISPALLEG-----LEKIDLV 102

Query: 120 DFNDTQ-----------LFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             +D             +F + N I  Q   SL+++A   P   G  LPDL SR++    
Sbjct: 103 CIDDVNAIAGHPLWEEAIFDLYNRISEQKTCSLVLSASVSPSETGFALPDLISRMQWGLN 162

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            ++    DD     + +  A R + + + +  +++ R+ R L     ++D++D  ++   
Sbjct: 163 YQLQPMADDEKLAALQRRAAMRGLQLSEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQ 222

Query: 228 MGITRSLAAEVLK 240
             +T     E+L+
Sbjct: 223 RKLTIPFIKEMLR 235


>gi|88799318|ref|ZP_01114896.1| hypothetical protein MED297_16968 [Reinekea sp. MED297]
 gi|88777857|gb|EAR09054.1| hypothetical protein MED297_16968 [Reinekea sp. MED297]
          Length = 235

 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 105 IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
           +D    V L+DIDL+  +      +FH  N +      L++ AR  P+   + L DL SR
Sbjct: 96  LDQLHAVALDDIDLIAADAHWQEAVFHFYNRMRDSGRHLMVGARCSPLQLPLTLADLKSR 155

Query: 162 LKAA-TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           L +  T+  + + D++ +  VI K    R + I + +A +++ R  +++       D++D
Sbjct: 156 LSSGLTISLLPMTDEERVTWVIWKG-RRRGLVIGRDVAEFLITRHNQNMKELVTTFDRLD 214

Query: 221 NLALSRGMGITRSLAAEVL 239
           + +L+    IT     +VL
Sbjct: 215 SASLAEKRKITIPFLKQVL 233


>gi|295675601|ref|YP_003604125.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1002]
 gi|295435444|gb|ADG14614.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1002]
          Length = 250

 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 4/174 (2%)

Query: 65  RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121
           R   + G +GSG++ L  A +        RF+    SL +   D R  +  ++D D L  
Sbjct: 47  RTFYIWGEAGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSA 106

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                +F++ N +  + +S L+ A            DL +RL    V  ++   DD    
Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAAPIGMTVREDLRTRLGWGLVFHLAPLPDDAKAA 166

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           V+ +   +R I +   + AY++    R +     L+D +D  +L +   +T  L
Sbjct: 167 VLKRAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220


>gi|212715149|ref|ZP_03323277.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661830|gb|EEB22405.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 17/168 (10%)

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135
            L +   +  +   F+   + +D +LID        DI  L   D    Q FH  N++HQ
Sbjct: 230 ALGDTNQNSGQIKEFNRRYREVDVLLID--------DIQFLSGKDATLEQFFHTFNTLHQ 281

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFADRQIFI 193
            +  +++ +   P         L SR ++   V +  PD   LE    I++M A      
Sbjct: 282 ANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPD---LETRIAILRMIAHESNVQ 338

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           D  L   I +R   ++   E  ++++  +A   G  +TR+LA   L++
Sbjct: 339 DDVL-NLIAERFTENIRELEGALNRVTAMASLSGQPVTRALAEHTLQD 385


>gi|126667545|ref|ZP_01738515.1| DNA replication initiation factor [Marinobacter sp. ELB17]
 gi|126627971|gb|EAZ98598.1| DNA replication initiation factor [Marinobacter sp. ELB17]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLL 119
           L G S +GKS L       + S   S +  S+  +          ++    V L+D+D +
Sbjct: 54  LCGDSDTGKSHLLQALCHYAESQSLSAVCISITELGPFGPDALTGLEQFNLVCLDDLDSV 113

Query: 120 DFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                 +  +FH+ N +      L+++    P S    LPDL SRL     +++ +  D 
Sbjct: 114 VGQTGWEEAVFHLYNRMLDAGHQLVVSLSDVPASLPFILPDLSSRLSHGLTLQLGIYRDS 173

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             +++++     R + +   +A +I++R  R L     ++D +D  +L
Sbjct: 174 DRKRILMARVEQRGLVMADDVAGFILRRAPRRLGELLAILDSLDENSL 221


>gi|27904525|ref|NP_777651.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|29839271|sp|P59567|DNAA_BUCBP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|27903922|gb|AAO26756.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 457

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 11/152 (7%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPV 149
           F    +S++++LID        DI    +   +  +LFH IN++   +  +++T+  FP 
Sbjct: 212 FKKYYRSVNTLLID--------DIQFFAYKKHSQEELFHTINALLNRNQQIIITSDQFPQ 263

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L SR +    ++I  PD +   K+++K      I +  K+A +I + ++ ++
Sbjct: 264 KIHGIETRLKSRFECGLTIRIDPPDLNTRTKILIKKSHIYDINLSYKVAFFIAKNLKSNI 323

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              E  ++K+   + S+   IT + A + L+E
Sbjct: 324 RELEGALNKILANSDSKKKIITINFAYKTLQE 355


>gi|145633314|ref|ZP_01789045.1| DNA replication initiation factor [Haemophilus influenzae 3655]
 gi|144986160|gb|EDJ92750.1| DNA replication initiation factor [Haemophilus influenzae 3655]
          Length = 231

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSD----KSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S+    K R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             +V+      R   +  + A +++ R+ R +    + +D +D  +L     +T     E
Sbjct: 168 KVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|209520580|ref|ZP_03269335.1| DnaA regulatory inactivator Hda [Burkholderia sp. H160]
 gi|209498973|gb|EDZ99073.1| DnaA regulatory inactivator Hda [Burkholderia sp. H160]
          Length = 250

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 4/174 (2%)

Query: 65  RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121
           R   + G +GSG++ L  A +        RF+    SL +   D R  +  ++D D L  
Sbjct: 47  RTFYVWGEAGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSA 106

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                +F++ N +  + +S L+ A            DL +RL    V  ++   DD    
Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAAPIGMTVREDLRTRLGWGLVFHLAPLPDDAKAA 166

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           V+ +   +R I +   + AY++    R +     L+D +D  +L +   +T  L
Sbjct: 167 VLKRAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220


>gi|170726517|ref|YP_001760543.1| DNA replication initiation factor [Shewanella woodyi ATCC 51908]
 gi|169811864|gb|ACA86448.1| DnaA regulatory inactivator Hda [Shewanella woodyi ATCC 51908]
          Length = 236

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 23/194 (11%)

Query: 65  RVVILVGPSGSGKSCLANIW----SDKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDL 118
           R V L GP  SG++ L +      +D  RS+ +    I  S+ + L++      LE +DL
Sbjct: 47  RSVYLWGPVKSGRTHLMHAACAHANDLQRSSFYLPLGIHASISTALLEG-----LESLDL 101

Query: 119 LDFNDT-----------QLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           +  +D             +F + N + ++ + SL+++A   P   G  LPDL SR++   
Sbjct: 102 ICIDDVDAIAGHPLWEEAIFDLYNRVSEHKNCSLIVSASVSPNDSGFTLPDLISRMQWGL 161

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
             ++    D+     + +  A R + + + +  +++ R+ R L     ++D++D  +L  
Sbjct: 162 NYQLQPMADEEKLAALQRRAAMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASLVH 221

Query: 227 GMGITRSLAAEVLK 240
              +T     E+L+
Sbjct: 222 QRKLTIPFVKEMLR 235


>gi|119356612|ref|YP_911256.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353961|gb|ABL64832.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 175

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 27/127 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-------------------LIDT 107
           + L+GPSG+GKS LA     ++ +  +  + +++D +                   ++  
Sbjct: 11  LTLIGPSGTGKSYLAGGLCHEALNLGYHELFRTMDELIHTIRLKEVTTAAAREFKRIMHA 70

Query: 108 RKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
           R PV +EDI +L   +T    LF ++N +H+  +S ++T    P  W   L  L   L  
Sbjct: 71  RLPV-IEDIMMLPLENTVAVGLFQLVNQLHE-QASFIITTNKSPKDWAEMLDRL---LYK 125

Query: 165 ATVVKIS 171
             V+K++
Sbjct: 126 CEVIKLT 132


>gi|332306898|ref|YP_004434749.1| DnaA regulatory inactivator Hda [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174227|gb|AEE23481.1| DnaA regulatory inactivator Hda [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 237

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 17/184 (9%)

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKS-----------LDSILIDTRKPVLLEDIDLL 119
           G  G GKS L      K++S   + +  S           LD +  +  + + L+D+D L
Sbjct: 53  GEHGVGKSHLLYSLCHKAQSANVTAVYLSFKEKQQYSPEVLDGL--EHSQLICLDDVDAL 110

Query: 120 DFNDT---QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
             + T    +F ++N + +   S ++  A   P+S  + L DL SRL       ++   D
Sbjct: 111 QDSQTWQIAVFDLLNRVKELGISHVVACANGGPMSLNLQLADLASRLAWGVSFTLASLSD 170

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           +     ++     R + + +K+A Y+V   +R +      +DK+D L+L +   +T    
Sbjct: 171 EGRCVALLTRAKQRGLVMPEKVAVYLVNHWQRDMPSLMNTLDKLDQLSLQQQRKLTIPFV 230

Query: 236 AEVL 239
            E L
Sbjct: 231 KEAL 234


>gi|145634445|ref|ZP_01790155.1| DNA replication initiation factor [Haemophilus influenzae PittAA]
 gi|145268425|gb|EDK08419.1| DNA replication initiation factor [Haemophilus influenzae PittAA]
          Length = 231

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSD----KSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S+    K R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             +V+      R   +  + A +++ R+ R +    + +D +D  +L     +T     E
Sbjct: 168 KVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|313885387|ref|ZP_07819137.1| chromosomal replication initiator protein DnaA [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619117|gb|EFR30556.1| chromosomal replication initiator protein DnaA [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 449

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 7/143 (4%)

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L   D    + FH  N+++     +++T+   P +       L SR K    
Sbjct: 213 LLIDDIQFLSNKDKTQEEFFHTFNALYNNGKQIVLTSDRLPNNITNLEERLISRFKWGLS 272

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I+ PD +    ++ K  +   + I+ +   YI   ++ ++   E  + ++   A  +G
Sbjct: 273 TDITPPDLETRIAILRKKASTDNLDINSETLTYIASHIDSNIRELEGALVRVIAYAAIKG 332

Query: 228 MGITRSLAAEVLK----ETQQCD 246
           + IT  LAAE LK    + QQ D
Sbjct: 333 LDITTDLAAEALKNIVDDNQQND 355


>gi|225352379|ref|ZP_03743402.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156886|gb|EEG70255.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 530

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L   D    Q FH  N++HQ +  +++ +   P         L SR ++   
Sbjct: 293 LLIDDIQFLSGKDATLEQFFHTFNTLHQANKRIVIASDVPPKDLQGFNERLISRFESGLT 352

Query: 168 VKISLPDDDFLEK--VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           V +  PD   LE    I++M A      D  L   I +R   ++   E  ++++  +A  
Sbjct: 353 VDVKPPD---LETRIAILRMIAHGTNVQDDVL-NLIAERFTENIRELEGALNRVTAMASL 408

Query: 226 RGMGITRSLAAEVLKE 241
            G  +TR+LA + L++
Sbjct: 409 SGQPVTRALAEQTLQD 424


>gi|315634909|ref|ZP_07890191.1| DnaA regulatory inactivator Hda [Aggregatibacter segnis ATCC 33393]
 gi|315476461|gb|EFU67211.1| DnaA regulatory inactivator Hda [Aggregatibacter segnis ATCC 33393]
          Length = 234

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 3/116 (2%)

Query: 126 LFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +F +IN I +   +LL ++A   P +    LPDL SRL    V ++ +P +D  +  +++
Sbjct: 118 IFDLINRIRETGKTLLVISADQSPTNLSAHLPDLASRLTWGEVYQL-MPLNDQQKITVLQ 176

Query: 185 MFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + A  R I +  + A ++ +R+ER +      ++K+D  +L     +T     E+L
Sbjct: 177 LAAHQRGIELPDETANFLFKRLERDMKTLFNALEKLDQASLQAQRKLTIPFVKEIL 232


>gi|329893747|ref|ZP_08269835.1| Chromosomal replication initiator, DnaA [gamma proteobacterium
           IMCC3088]
 gi|328923470|gb|EGG30784.1| Chromosomal replication initiator, DnaA [gamma proteobacterium
           IMCC3088]
          Length = 237

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 28/196 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           + L G   +GK+ L +     +  T        +  S D  ++D      LE  D L F+
Sbjct: 42  IWLTGAYSTGKTHLLSALVCANDQTALYLPADELIASCDPTMLDG-----LEATDCLVFD 96

Query: 123 D-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           D             LFH+ N  H      + +++  P      L DL SR       +++
Sbjct: 97  DIDKLAHTPAWSEALFHLFNRHHAQGGRWVCSSQVAPRYVDTPLADLRSRFTLFPAFELA 156

Query: 172 LPDDDFLEKVIVKMFADRQIF----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
               ++ ++  VK+F++R  F    +++ +  YI   + R L +  +L+D++D  +L+  
Sbjct: 157 ----NYNDQERVKIFSERARFRGIKVNEDVYPYITNHLPRDLKYWLQLLDQLDQASLAEQ 212

Query: 228 MGITRSLAAEVLKETQ 243
             +T  L   VL++ +
Sbjct: 213 RKVTIPLVKSVLQQNE 228


>gi|78065321|ref|YP_368090.1| hypothetical protein Bcep18194_A3847 [Burkholderia sp. 383]
 gi|206561601|ref|YP_002232366.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia J2315]
 gi|77966066|gb|ABB07446.1| DNA replication initiation-like ATPase [Burkholderia sp. 383]
 gi|198037643|emb|CAR53586.1| DnaA-homolog protein Hda [Burkholderia cenocepacia J2315]
          Length = 244

 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 8/183 (4%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  G G++  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 46  PDRSFYIWGEPGCGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             +DTQ   LF++ N +  + SS  + A            DL +RL    V  +S P D 
Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L  
Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223

Query: 237 EVL 239
            +L
Sbjct: 224 RML 226


>gi|90020543|ref|YP_526370.1| regulatory inactivation of DnaA Hda protein [Saccharophagus
           degradans 2-40]
 gi|89950143|gb|ABD80158.1| regulatory inactivation of DnaA Hda protein [Saccharophagus
           degradans 2-40]
          Length = 239

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 56/115 (48%)

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           +FH+ N++      LL+ + T P +  + LPDL SR+  +    +   +D   +  ++  
Sbjct: 124 VFHLYNNLRDAGHRLLIASHTSPPALPLTLPDLKSRVLGSVRYHVESLNDLQKQDALIAR 183

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              R + +  ++A +I+ R  R       L+D++D+ +L +   +T   A EVL 
Sbjct: 184 AVARGMDMPVEVARFILNRASRDTNELFYLLDQLDDASLQKQRKLTVPFAKEVLN 238


>gi|90417462|ref|ZP_01225385.1| DnaA family protein [marine gamma proteobacterium HTCC2207]
 gi|90330703|gb|EAS45982.1| DnaA family protein [marine gamma proteobacterium HTCC2207]
          Length = 234

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 56/114 (49%)

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           LF+  N   +  + LL+TA T P    V L DL SRLK+   +++    D  L +++   
Sbjct: 119 LFNFFNRCSESGTRLLITAHTLPDYLEVLLDDLLSRLKSGISLQLMDYKDADLRRLLQHR 178

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +   +++  ++A +++ R+ R+       ++K+D ++L     +T      VL
Sbjct: 179 ASGLGLYLSDEVARFLLHRLPRNSHLLMDALEKLDAVSLREQRRLTLPFVKTVL 232


>gi|126174013|ref|YP_001050162.1| DNA replication initiation factor [Shewanella baltica OS155]
 gi|153000304|ref|YP_001365985.1| DNA replication initiation factor [Shewanella baltica OS185]
 gi|160874938|ref|YP_001554254.1| DNA replication initiation factor [Shewanella baltica OS195]
 gi|217973665|ref|YP_002358416.1| DNA replication initiation factor [Shewanella baltica OS223]
 gi|304411437|ref|ZP_07393051.1| DnaA regulatory inactivator Hda [Shewanella baltica OS183]
 gi|307305241|ref|ZP_07584989.1| DnaA regulatory inactivator Hda [Shewanella baltica BA175]
 gi|125997218|gb|ABN61293.1| regulatory inactivation of DnaA Hda protein [Shewanella baltica
           OS155]
 gi|151364922|gb|ABS07922.1| Chromosomal replication initiator DnaA [Shewanella baltica OS185]
 gi|160860460|gb|ABX48994.1| DnaA regulatory inactivator Hda [Shewanella baltica OS195]
 gi|217498800|gb|ACK46993.1| DnaA regulatory inactivator Hda [Shewanella baltica OS223]
 gi|304350292|gb|EFM14696.1| DnaA regulatory inactivator Hda [Shewanella baltica OS183]
 gi|306911544|gb|EFN41969.1| DnaA regulatory inactivator Hda [Shewanella baltica BA175]
 gi|315267174|gb|ADT94027.1| DnaA regulatory inactivator Hda [Shewanella baltica OS678]
          Length = 236

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 66  VVILVGPSGSGKSCL---ANIWSDKSRSTRFS---NIAKSLDSILIDTRKP---VLLEDI 116
            + L GP  SG++ L   A   +++     F     I  S+ + L++  +    V ++D+
Sbjct: 48  AIYLWGPVKSGRTHLMHAACAHANEVERRSFYIPLGIHASISTALLEGLEQLDLVCIDDV 107

Query: 117 DLLDFN---DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           D +  +   +  +F + N + ++ + +L+++  + P   G  LPDL SR++     ++  
Sbjct: 108 DAIAGHPVWEEAIFDLYNRVAEHKNCALVVSGSSSPADAGFLLPDLVSRMQWGLNYQLQP 167

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
             DD     + +  A R + + + +  +++ RM R L     ++DK+D  +L     +T 
Sbjct: 168 MADDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTI 227

Query: 233 SLAAEVLK 240
             A E+L 
Sbjct: 228 PFAKEMLH 235


>gi|70725002|ref|YP_251916.1| chromosomal replication initiation protein [Staphylococcus
           haemolyticus JCSC1435]
 gi|123762366|sp|Q4LAL5|DNAA_STAHJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|68445726|dbj|BAE03310.1| chromosomal replication initiator protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 451

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ    +++++   P         L SR +   +
Sbjct: 214 LLIDDIQFIQNKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 273

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 274 VDITPPDYETRMAILQKKIEEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQG 333

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  LAAE LK+  Q 
Sbjct: 334 RPITTELAAEALKDIIQV 351


>gi|228474142|ref|ZP_04058879.1| chromosomal replication initiator protein DnaA [Staphylococcus
           hominis SK119]
 gi|228271837|gb|EEK13174.1| chromosomal replication initiator protein DnaA [Staphylococcus
           hominis SK119]
          Length = 450

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ    +++++   P         L SR +   +
Sbjct: 213 LLIDDIQFIQNKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 272

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 273 VDITPPDYETRMAILQKKIEEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQG 332

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  LAAE LK+  Q 
Sbjct: 333 KPITTELAAEALKDIIQV 350


>gi|314935201|ref|ZP_07842554.1| ATPase involved in DNA replication initiation [Staphylococcus
           hominis subsp. hominis C80]
 gi|313656536|gb|EFS20275.1| ATPase involved in DNA replication initiation [Staphylococcus
           hominis subsp. hominis C80]
          Length = 450

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ    +++++   P         L SR +   +
Sbjct: 213 LLIDDIQFIQNKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 272

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 273 VDITPPDYETRMAILQKKIEEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQG 332

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  LAAE LK+  Q 
Sbjct: 333 KPITTELAAEALKDIIQV 350


>gi|262375589|ref|ZP_06068822.1| DnaA regulatory inactivator Hda [Acinetobacter lwoffii SH145]
 gi|262309843|gb|EEY90973.1| DnaA regulatory inactivator Hda [Acinetobacter lwoffii SH145]
          Length = 234

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 30/182 (16%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQ-- 125
           + G +G+GKS L +   D       S I  SL  +L   T     L+  DL+  +D +  
Sbjct: 44  IYGGAGTGKSHLLSAICDSYLEVGKSAIQVSLLELLDAPTEAITSLDRFDLVALDDIEAI 103

Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI---SLP 173
                    +FH+IN  ++    L+ ++R  P+   + LPDL SRL  A   ++   SL 
Sbjct: 104 SGVPHWQRAVFHLINYNNEGGGQLVFSSRFAPIELKLELPDLQSRLTQAVSTRVPSGSLY 163

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAY-----------IVQRMER--SLVFAEKLVDKMD 220
            D +   ++  +   R I +D ++  Y           ++QR+E+   L+  EKL     
Sbjct: 164 ADRY--ALVSSVLDRRGIHLDPQIFDYLLSHGPHQTSVLLQRLEQIIQLLKGEKLKVSNA 221

Query: 221 NL 222
           NL
Sbjct: 222 NL 223


>gi|92114232|ref|YP_574160.1| regulatory inactivation of DnaA Hda protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91797322|gb|ABE59461.1| regulatory inactivation of DnaA Hda protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 232

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 110 PVLLEDIDLLDFN--------------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           P +LED++ LD                +  LFH  N +   D  L++ A   P      L
Sbjct: 87  PHMLEDLERLDLVAIDDLSAVLGRKRWEEGLFHFFNRMRDADKRLVIAADAAPRQLSTVL 146

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
           PDL SRL       ++  DD    + +      R + +  ++A YI+ R  R L      
Sbjct: 147 PDLASRLTWGVTFHVAPLDDAGRFEALQLRARVRGMQLPDEVARYILHRGPRQLPALFDA 206

Query: 216 VDKMDNLALS 225
           + ++D  +LS
Sbjct: 207 LARLDRASLS 216


>gi|120599138|ref|YP_963712.1| DNA replication initiation factor [Shewanella sp. W3-18-1]
 gi|120559231|gb|ABM25158.1| regulatory inactivation of DnaA Hda protein [Shewanella sp.
           W3-18-1]
          Length = 236

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 87/188 (46%), Gaps = 13/188 (6%)

Query: 66  VVILVGPSGSGKSCLANIWSDKS-----RSTRFS-NIAKSLDSILIDTRKP---VLLEDI 116
            + L GP  SG++ L +     +     RS      I  S+ + L++  +    V ++D+
Sbjct: 48  AIYLWGPVKSGRTHLMHAACAHANELDRRSFYIPLGIHASISTALLEGLEQLDLVCIDDV 107

Query: 117 DLLDFN---DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           D +  +   +  +F + N + ++ + +L+++  + P   G  LPDL SR++     ++  
Sbjct: 108 DAIAGHPIWEEAIFDLYNRVAEHKNCALVVSGSSSPAEAGFLLPDLVSRMQWGLNYQLQP 167

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
             DD     + +  A R + + + +  +++ RM R L     ++DK+D  +L     +T 
Sbjct: 168 MADDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTI 227

Query: 233 SLAAEVLK 240
             A E+L 
Sbjct: 228 PFAKEMLH 235


>gi|146292791|ref|YP_001183215.1| DNA replication initiation factor [Shewanella putrefaciens CN-32]
 gi|145564481|gb|ABP75416.1| regulatory inactivation of DnaA Hda protein [Shewanella
           putrefaciens CN-32]
 gi|319426095|gb|ADV54169.1| DnaA regulatory inactivator Hda [Shewanella putrefaciens 200]
          Length = 236

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 87/188 (46%), Gaps = 13/188 (6%)

Query: 66  VVILVGPSGSGKSCLANIWSDKS-----RSTRFS-NIAKSLDSILIDTRKP---VLLEDI 116
            + L GP  SG++ L +     +     RS      I  S+ + L++  +    V ++D+
Sbjct: 48  AIYLWGPVKSGRTHLMHAACAHANELDRRSFYIPLGIHASISTALLEGLEQLDLVCIDDV 107

Query: 117 DLLDFN---DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           D +  +   +  +F + N + ++ + +L+++  + P   G  LPDL SR++     ++  
Sbjct: 108 DAIAGHPLWEEAIFDLYNRVAEHKNCALVVSGSSSPAEAGFLLPDLVSRMQWGLNYQLQP 167

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
             DD     + +  A R + + + +  +++ RM R L     ++DK+D  +L     +T 
Sbjct: 168 MADDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTI 227

Query: 233 SLAAEVLK 240
             A E+L 
Sbjct: 228 PFAKEMLH 235


>gi|257464853|ref|ZP_05629224.1| DNA replication initiation factor [Actinobacillus minor 202]
 gi|257450513|gb|EEV24556.1| DNA replication initiation factor [Actinobacillus minor 202]
          Length = 236

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 86/189 (45%), Gaps = 24/189 (12%)

Query: 75  SGKSC--------LANIWSDKSRSTRFSNIAKS--LDSILIDTRKP---VLLEDIDLLDF 121
            GKSC        ++N +    RS+ +  ++KS     +++D       + L+DI  +  
Sbjct: 46  GGKSCGKSHLLKAVSNYYLQNQRSSSYIPLSKSHYFSPMVLDNAAQLDVICLDDIQAIAG 105

Query: 122 ND---TQLFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           N+     +F + N I +        + + LL++A   P    + LPDL SRL    V  +
Sbjct: 106 NEEWEVAIFDLFNQIREQQSLFGNGHKTLLLISADCPPHELKIKLPDLRSRLIWGEVYHL 165

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +  +D+  +K++      + I +  ++AA++++R+   L      ++++D  +L     +
Sbjct: 166 NHLNDEQKQKILKTSAYQKGIDLPDEVAAFLLKRLGNDLQVLLTELERLDRASLQAQRNL 225

Query: 231 TRSLAAEVL 239
           T     EVL
Sbjct: 226 TVPFVKEVL 234


>gi|238026308|ref|YP_002910539.1| DnaA regulatory inactivator Hda [Burkholderia glumae BGR1]
 gi|237875502|gb|ACR27835.1| Chromosomal replication initiator protein DnaA [Burkholderia glumae
           BGR1]
          Length = 334

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 71  GPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ-- 125
           G +GSG+S L  A +      S R+      L +I  D R  V L  +D +D  +DTQ  
Sbjct: 148 GEAGSGRSHLLQALVHDTSYGSARYLTPQSPLGAIAFDPR--VSLYAVDDIDAMSDTQQI 205

Query: 126 -LFHIINSIHQYDSSLLMTAR-TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            LF++ N +  + SS  + A    P++  V   DL +RL    V  ++ P  D  + V+ 
Sbjct: 206 ALFNLFNEVRAHPSSAFVGAGPAAPLALDV-REDLRTRLGWGLVFHLA-PLSDADKAVVF 263

Query: 184 KMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           K  A  R I I   + AY++    R +     L+D +D  +L +   +T  L   +L   
Sbjct: 264 KQAAKARGIAIADDVPAYLLTHYRRDMPSLMALLDALDRFSLEQKRAVTLPLLRALLTAL 323

Query: 243 QQ 244
           ++
Sbjct: 324 ER 325


>gi|34556459|ref|NP_906274.1| chromosomal replication initiation protein [Wolinella succinogenes
           DSM 1740]
 gi|61212685|sp|Q7MSY2|DNAA_WOLSU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|34482173|emb|CAE09174.1| dnaA, probable chromosomal replication initiator protein [Wolinella
           succinogenes]
          Length = 437

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 15/155 (9%)

Query: 92  RFSNIAKSLDSILID-----TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
           RF +  ++ D +LID       KP + E+           FH  N +H  +  +++T+  
Sbjct: 189 RFRDKYRACDYLLIDDVQFFGGKPQIQEE----------FFHTFNELHNKNKQIVLTSDK 238

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P         L SR +   V  I  P+ +    +I K      I++  ++ +YI   M+
Sbjct: 239 TPKQIAGLEERLKSRFEWGMVSDIQPPELETKINIIKKKCEFDGIYLSNEIISYIATNMD 298

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++   E ++ K++  A      IT   A  VLKE
Sbjct: 299 NNIREIEGIIIKLNAYANLMNQEITLQFAKNVLKE 333


>gi|119775051|ref|YP_927791.1| DNA replication initiation factor [Shewanella amazonensis SB2B]
 gi|119767551|gb|ABM00122.1| regulatory inactivation of DnaA Hda protein [Shewanella amazonensis
           SB2B]
          Length = 241

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 27/196 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS--------NIAKSLDSILIDTRKPVLLEDI 116
           + + L GP  SG++ L  I +  +R+             I  S+ + L++      LE  
Sbjct: 52  QAIYLWGPVKSGRTHL--IHAACARANELERRSFYIPLGIHASISTALLEG-----LEQF 104

Query: 117 DLLDFNDT-----------QLFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
           DL+  +D             +F + N +  Q   SL+++A   P+  G  LPDL SR+  
Sbjct: 105 DLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHW 164

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
               ++    DD     + +  A R + + + +  +++ RM R L     ++D++D  ++
Sbjct: 165 GLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASM 224

Query: 225 SRGMGITRSLAAEVLK 240
                +T     E+L+
Sbjct: 225 VHQRKLTIPFVKEMLR 240


>gi|197119682|ref|YP_002140109.1| DnaA regulatory inactivator Hda [Geobacter bemidjiensis Bem]
 gi|197089042|gb|ACH40313.1| DnaA regulatory inactivator Hda [Geobacter bemidjiensis Bem]
          Length = 234

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 101/234 (43%), Gaps = 23/234 (9%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIWS 85
           QL F FP       ++ +V    + A +        P+  ++ + GP GSGK+ L    S
Sbjct: 2   QLIFDFPVVPRFGFENFVVCGGNKTAYQFAKKLVEDPTENLLYIYGPEGSGKTHLLTALS 61

Query: 86  DKSRSTRFS-NIAKSLDSILIDTRKP------------VLLEDIDLL-DFNDT--QLFHI 129
           +      FS   A SL    + +  P            ++L+D+ LL + ++   +L+ +
Sbjct: 62  NSIDGRYFSFRDAGSLYGSSVGSEGPSRLAEHFQGAAALVLDDLHLLPNLHEVRVELWEL 121

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N+ +     + ++    P         L SRL    V ++ + DD+    ++ K+  DR
Sbjct: 122 FNAFYSSGRKIAISGLMPPKELPHLDGHLTSRLLWGLVARMDVSDDESRRMILKKLAEDR 181

Query: 190 QIFIDKKLAAYIVQRMER---SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           Q+ +   +   ++ R+ R   SLV+A   ++ ++  A+S    ++  LA E  +
Sbjct: 182 QMALPDDVIDEMLLRVRRDIPSLVYA---LENINRYAISTKRKVSLRLAKEAFR 232


>gi|332283314|ref|YP_004415225.1| hypothetical protein PT7_0061 [Pusillimonas sp. T7-7]
 gi|330427267|gb|AEC18601.1| hypothetical protein PT7_0061 [Pusillimonas sp. T7-7]
          Length = 233

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 90/196 (45%), Gaps = 14/196 (7%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSIL---IDTRKPVLLEDID 117
           P R V L G  G+G++ L    +  + +  F  S+ A+SL SI    +   + + +++++
Sbjct: 37  PGRAVYLWGAPGAGRTHLLQSVASGADTRYFHHSDNAQSLRSIASADLLAYRLIAIDNVE 96

Query: 118 LLDFNDTQ--LFHIINSIHQYDSS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LD +D Q  LF + N   +  ++     L++     P++  +   DL +RL    V ++
Sbjct: 97  SLD-DDRQAALFALYNRWREVAATPQGFALVLAGDRAPLTMPLR-EDLRTRLGWDLVFRL 154

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +    ADR + +  ++  +++    R +     L+D +D  +L R   I
Sbjct: 155 EQLSDEHRAQALSTRAADRGLQLGPEVINWVLTHYTRDMRHLSALIDALDRYSLERHRAI 214

Query: 231 TRSLAAEVLKETQQCD 246
           T  L  E+L   Q  +
Sbjct: 215 TLPLLKELLASGQPVN 230


>gi|197118824|ref|YP_002139251.1| recombination factor protein RarA [Geobacter bemidjiensis Bem]
 gi|197088184|gb|ACH39455.1| stalled replication fork rescue ATPase [Geobacter bemidjiensis Bem]
          Length = 434

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 25/140 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP GSGK+ LA I ++ +RS    FS I   +  I     + V+ E  D L +   
Sbjct: 52  LIFWGPPGSGKTTLARIIANATRSHFIFFSAIMSGIKEI-----REVVKEAEDTLKYQGK 106

Query: 125 QLFHIINSIHQYDSS--------------LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +    ++ IH+++ S               ++ A T   S+ V  P L SR K   +V  
Sbjct: 107 RTILFVDEIHRFNKSQQDAFLPHVERGTFTIIGATTENPSFEVIAP-LLSRCK--VLVLQ 163

Query: 171 SLPDDDFLEKVIVKMFADRQ 190
            L D+D L K++    ADR+
Sbjct: 164 PLSDEDLL-KILENALADRE 182


>gi|329735774|gb|EGG72055.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis VCU028]
 gi|329736075|gb|EGG72348.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis VCU045]
          Length = 451

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ +  +++++   P         L SR +   +
Sbjct: 214 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 273

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 274 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 333

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L AE LK+  Q 
Sbjct: 334 KPITTELTAEALKDIIQS 351


>gi|311748263|ref|ZP_07722048.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1]
 gi|126576758|gb|EAZ81006.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1]
          Length = 472

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 13/152 (8%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFND-TQ--LFHIINSIHQYDSSLLMTARTFPV 149
           F+N    +D ++ID        DI  L   D TQ   FHI N +HQ    ++MT+   P 
Sbjct: 224 FTNFYMQVDVLIID--------DIQFLAGKDRTQEMFFHIFNHLHQNKKQIIMTSDCPPR 275

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L SR K      + +PD +    +I +      IFI   +  Y+   ++ ++
Sbjct: 276 DLKGLEERLLSRFKWGLTADLQMPDFETRVAIIRRKMQSEGIFIPDDVVEYLAYTVDTNV 335

Query: 210 VFAEK-LVDKMDNLALSRGMGITRSLAAEVLK 240
              E  L+  + + +LSR + I+  LA  V+K
Sbjct: 336 RELEGILISLIAHASLSR-VEISLELAKTVMK 366


>gi|148263480|ref|YP_001230186.1| chromosomal replication initiator, DnaA [Geobacter uraniireducens
           Rf4]
 gi|146396980|gb|ABQ25613.1| regulatory inactivation of DnaA Hda protein [Geobacter
           uraniireducens Rf4]
          Length = 241

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 25/239 (10%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIW 84
           QL F FP       D+ +V +  + A               ++ L G +GSGK+ L    
Sbjct: 2   QLIFDFPVNPKFGFDNFVVCAGNKTAYHFARQLAEGDGTENLLYLYGSTGSGKTHLLTAM 61

Query: 85  S---------DKSRSTRFSNIAK-----------SLDSILIDTRKPVLLEDIDLLDFNDT 124
           +         D   S  F NI +           S  +   +    +L++DI L+  ND 
Sbjct: 62  ANSICREAGLDAIPSISFKNIDELYRGNYPAEEPSKLAERFNNAPALLVDDIHLIPDNDN 121

Query: 125 ---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              +L+ + N  +     + +T    P         L SRL    V K+ +  DD L  +
Sbjct: 122 IRVELWQLFNDFYTAGKKIAITGLNPPKELPHLDGHLTSRLLWGLVTKLDISGDDSLRMI 181

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + K+  DRQ+ + + + A+++  + R +      ++++   A++    I+   A E L+
Sbjct: 182 LQKLAEDRQVALPEDVIAHLLVHIRRDIPSLLNALEQIRRHAIATKRKISLRQAKEALQ 240


>gi|319399914|gb|EFV88160.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis FRI909]
          Length = 451

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ +  +++++   P         L SR +   +
Sbjct: 214 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 273

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 274 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 333

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L AE LK+  Q 
Sbjct: 334 KPITTELTAEALKDIIQS 351


>gi|57865939|ref|YP_190094.1| chromosomal replication initiation protein [Staphylococcus
           epidermidis RP62A]
 gi|71151806|sp|Q5HJZ9|DNAA_STAEQ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|57636597|gb|AAW53385.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis RP62A]
          Length = 451

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ +  +++++   P         L SR +   +
Sbjct: 214 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 273

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 274 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 333

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L AE LK+  Q 
Sbjct: 334 KPITTELTAEALKDIIQS 351


>gi|27466919|ref|NP_763556.1| chromosomal replication initiation protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|282874721|ref|ZP_06283600.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis SK135]
 gi|38257580|sp|Q8CQK7|DNAA_STAES RecName: Full=Chromosomal replication initiator protein DnaA
 gi|27314461|gb|AAO03598.1|AE016744_1 chromosomal replication initiator protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|281296437|gb|EFA88952.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis SK135]
 gi|329724160|gb|EGG60678.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis VCU144]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ +  +++++   P         L SR +   +
Sbjct: 214 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 273

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 274 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 333

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L AE LK+  Q 
Sbjct: 334 KPITTELTAEALKDIIQS 351


>gi|242243255|ref|ZP_04797700.1| replication initiation protein DnaA [Staphylococcus epidermidis
           W23144]
 gi|242233204|gb|EES35516.1| replication initiation protein DnaA [Staphylococcus epidermidis
           W23144]
          Length = 455

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ +  +++++   P         L SR +   +
Sbjct: 218 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 277

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 278 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 337

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L AE LK+  Q 
Sbjct: 338 KPITTELTAEALKDIIQS 355


>gi|242372602|ref|ZP_04818176.1| replication initiation protein DnaA [Staphylococcus epidermidis
           M23864:W1]
 gi|242349657|gb|EES41258.1| replication initiation protein DnaA [Staphylococcus epidermidis
           M23864:W1]
          Length = 455

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ +  +++++   P         L SR +   +
Sbjct: 218 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 277

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 278 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 337

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L AE LK+  Q 
Sbjct: 338 KPITTELTAEALKDIIQA 355


>gi|240949838|ref|ZP_04754164.1| DNA replication initiation factor [Actinobacillus minor NM305]
 gi|240295692|gb|EER46394.1| DNA replication initiation factor [Actinobacillus minor NM305]
          Length = 236

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 86/189 (45%), Gaps = 24/189 (12%)

Query: 75  SGKSC--------LANIWSDKSRSTRFSNIAKS--LDSILIDTRKP---VLLEDIDLLDF 121
            GKSC        ++N +    RS+ +  ++KS     +++D       + L+DI  +  
Sbjct: 46  GGKSCGKSHLLKAVSNYYLQNQRSSSYIPLSKSHYFSPMVLDNAAQLDVICLDDIQAIAG 105

Query: 122 ND---TQLFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           N+     +F + N I +        + + LL++A   P    + LPDL SRL    V  +
Sbjct: 106 NEEWEVAIFDLFNQIREQQSLFGNGHKTLLLISADCPPHELKIKLPDLRSRLIWGEVYHL 165

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +  +D+  +K++      + I +  ++AA++++R+   L      ++++D  +L     +
Sbjct: 166 NHLNDEQKQKILKTSAYQKGIDLPDEVAAFLLKRLGSDLQVLLTELERLDRASLQAQRNL 225

Query: 231 TRSLAAEVL 239
           T     EVL
Sbjct: 226 TVPFVKEVL 234


>gi|113969917|ref|YP_733710.1| DNA replication initiation factor [Shewanella sp. MR-4]
 gi|114047153|ref|YP_737703.1| DNA replication initiation factor [Shewanella sp. MR-7]
 gi|117920090|ref|YP_869282.1| DNA replication initiation factor [Shewanella sp. ANA-3]
 gi|113884601|gb|ABI38653.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. MR-4]
 gi|113888595|gb|ABI42646.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. MR-7]
 gi|117612422|gb|ABK47876.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. ANA-3]
          Length = 236

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 6/154 (3%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTART 146
           S ST      + LD I ID      ++DI      +  +F + N + +    +L+++ R+
Sbjct: 87  SISTALLEGLEQLDLICIDD-----VDDIAGHPIWEEAIFDLYNRVAENKRCALVVSGRS 141

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P   G  LPDL SR++     ++    DD     + +  A R + + + +  +++ RM 
Sbjct: 142 APADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQRRAAMRGLQLPEDVGRFLLNRMA 201

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R L     ++DK+D  +L     +T   A E+L 
Sbjct: 202 RDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235


>gi|319786687|ref|YP_004146162.1| DnaA regulatory inactivator Hda [Pseudoxanthomonas suwonensis 11-1]
 gi|317465199|gb|ADV26931.1| DnaA regulatory inactivator Hda [Pseudoxanthomonas suwonensis 11-1]
          Length = 237

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 21/175 (12%)

Query: 67  VILVGPSGSGKSCLA-NIWSDKSRSTRFSNI---------------AKSLDSILIDTRKP 110
           + L GP+GSGK+ L   + ++   + R +                 A+  D + +D    
Sbjct: 51  IYLEGPAGSGKTHLGLGVCAEADGAGRRAAYLPLRAARGRLREALEAQEADVVALDG--- 107

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
             LE I     ++  LF   N +    +S+L  A   P +  + LPDL SRL   T + +
Sbjct: 108 --LEAIAGDRDDEVALFDFHNRMRAAGASVLYLATAAPQALPLVLPDLRSRLGQCTRIAL 165

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              DD+    V+      R + +++    +++ R  R +     L++++D  +L+
Sbjct: 166 HPLDDEGRRAVLRDRARRRGLVLEEAAIDWLLTRTGRDMGRLLGLLERIDRASLA 220


>gi|251811364|ref|ZP_04825837.1| replication initiation protein DnaA [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805113|gb|EES57770.1| replication initiation protein DnaA [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 455

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ +  +++++   P         L SR +   +
Sbjct: 218 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 277

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 278 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 337

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L AE LK+  Q 
Sbjct: 338 KPITTELTAEALKDIIQS 355


>gi|293367580|ref|ZP_06614233.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291318293|gb|EFE58686.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 455

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ +  +++++   P         L SR +   +
Sbjct: 218 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 277

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 278 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 337

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L AE LK+  Q 
Sbjct: 338 KPITTELTAEALKDIIQS 355


>gi|212550358|ref|YP_002308675.1| chromosomal replication initiation protein DnaA [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212548596|dbj|BAG83264.1| chromosomal replication initiation protein DnaA [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 455

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 111 VLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++L+DI  L   +  L   FHI N +HQ    +++TA   P         L SRLK    
Sbjct: 220 LILDDIHELSGKEKTLQAYFHIFNHLHQLGRQIILTADKIPAEIIGLEERLTSRLKWGLT 279

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
           +++  PD +  +K++      R++ + +++  YI + +
Sbjct: 280 IELQKPDLELRKKILNYRIRQRRLSVPEEVIDYIAENV 317


>gi|238898965|ref|YP_002924647.1| regulatory factor involved in inactivation of DnaA [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466725|gb|ACQ68499.1| regulatory factor involved in inactivation of DnaA [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 246

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 99/215 (46%), Gaps = 35/215 (16%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106
           +AIE A  L DS      R +      GSG+S L +     +  +  S   K++  + +D
Sbjct: 45  AAIESA--LCDSH----GRYIYFWSKQGSGRSHLLH-----AACSTLSKQGKAVGYVPLD 93

Query: 107 TRKPVLLEDIDLLD-------------FNDTQ----LFHIINSIHQYDSS-LLMTARTFP 148
            R    +E ++ ++               D +    +FH+ N I + D + LLMT    P
Sbjct: 94  KRAYFTVEVLEGMEQLALICIDNIEHIVGDIEWEMGIFHLYNRILEKDHTCLLMTGDRPP 153

Query: 149 VSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVI-VKMFADRQIF-IDKKLAAYIVQRM 205
               + LPDL SRL    + K+  L DDD   KV+ +++ A  + F + +++  ++++R+
Sbjct: 154 RQLHLHLPDLASRLDWGQIYKLQPLSDDD---KVLSLQLRAKLRGFELPEEVGRFMLKRL 210

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +R +      +D++D  ++     +T     E+L+
Sbjct: 211 DREMPSLFMALDRLDKASIRAQRKLTIPFVKEILR 245


>gi|109898802|ref|YP_662057.1| chromosomal replication initiator, DnaA [Pseudoalteromonas
           atlantica T6c]
 gi|109701083|gb|ABG41003.1| regulatory inactivation of DnaA Hda protein [Pseudoalteromonas
           atlantica T6c]
          Length = 237

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 17/185 (9%)

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKS-----------LDSILIDTRKPVLLEDIDLL 119
           G  G GKS L      K++S   S +  S           LD +  +  + + L+D D L
Sbjct: 53  GDHGVGKSHLLYSLCHKAQSANVSAVYLSFKDKQQYSPEVLDGL--EHSQLICLDDADAL 110

Query: 120 DFNDT---QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
             + T    +F ++N + +   S +++ A   P S  + L DL SRL       ++   D
Sbjct: 111 QDSQTWQIAVFDLLNRVKELGRSHVVVCANGGPTSLNLQLADLASRLAWGVSFTLASLSD 170

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           +     ++     R + + +K+A Y+V   +R +      +DK+D L+L +   +T    
Sbjct: 171 EGRCVALLTRARQRGLVMPEKVAMYLVNHWQRDMPSLMNTLDKLDQLSLQQQRKLTIPFV 230

Query: 236 AEVLK 240
            E L 
Sbjct: 231 KEALN 235


>gi|148825820|ref|YP_001290573.1| DNA replication initiation factor [Haemophilus influenzae PittEE]
 gi|148715980|gb|ABQ98190.1| hypothetical protein CGSHiEE_03865 [Haemophilus influenzae PittEE]
          Length = 231

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107

Query: 122 NDTQLFHIINSIHQYDSS----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     I +  +Q  +S    LL++A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNQIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             KV+      R   +  + A +++ R+ R +    K +D +D  +L     +T     +
Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNLTIPFVKK 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|297616541|ref|YP_003701700.1| ATPase AAA [Syntrophothermus lipocalidus DSM 12680]
 gi|297144378|gb|ADI01135.1| AAA ATPase central domain protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 429

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 17/153 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ L NI + K+RS  F  + K++ +   D R+ +  E    L F   + 
Sbjct: 55  MILYGPPGTGKTTLGNIIAKKTRS-HFEYL-KAVSTTTADIRQ-LAGEAGQRLKFYGQRT 111

Query: 127 FHIINSIH-----QYDSSLLMTARTFPVSWGVC----LPDLCSRLKAATVVKISLP-DDD 176
              ++ IH     Q D+ L M      +  G      L ++ S L + T + +  P D+ 
Sbjct: 112 ILFLDEIHRFNKAQQDALLPMVEEGIFILIGATTENPLYEINSALLSRTHIYVLEPLDEQ 171

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
            +E+++++   D+    ++ L  Y ++  E +L
Sbjct: 172 AIERILLRALNDK----ERGLGKYGIEITEEAL 200


>gi|147676336|ref|YP_001210551.1| chromosomal replication initiation protein [Pelotomaculum
           thermopropionicum SI]
 gi|146272433|dbj|BAF58182.1| ATPase [Pelotomaculum thermopropionicum SI]
          Length = 447

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 11/156 (7%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145
           ++  F N  + +D +L+D        DI  L   +    + FH  N++++ +  +++++ 
Sbjct: 196 KTVEFRNKYRGMDILLVD--------DIQFLAGKERTQEEFFHTFNTLYEANKQIIISSD 247

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L SR +   +  I  PD +    ++ K      +F+      YI  R+
Sbjct: 248 RPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKSQQENLFVPDDTIFYIANRI 307

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + ++   E  + ++   A   G  I+  LAAEVLK+
Sbjct: 308 QSNIRELEGALIRVIAYASLNGKEISPELAAEVLKD 343


>gi|119896293|ref|YP_931506.1| chromosomal replication initiation protein [Azoarcus sp. BH72]
 gi|166201859|sp|A1K1B4|DNAA_AZOSB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|119668706|emb|CAL92619.1| chromosomal replication initiator protein [Azoarcus sp. BH72]
          Length = 480

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDF-NDTQ--LFHIINSIHQYDSSLLMTARTFPV 149
           F    +SLD ++ID        DI   +  N TQ   FH  N++ +    +++T  T+P 
Sbjct: 235 FKRYYRSLDMLIID--------DIQFFNNKNRTQEEFFHAFNALTEAKKQIVITCDTYPK 286

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L SR      V+I  P+ +    ++ K     ++ +D  +A  I + +  ++
Sbjct: 287 DIQGLEDRLISRFDWGLTVQIEPPELEMRVAILQKKAEALRVSVDDDVAFLIAKNLRSNV 346

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              E  ++K+   A   G GI+  +A E LK+
Sbjct: 347 RELEGALNKVVAYARFHGRGISLEVAKEALKD 378


>gi|157961790|ref|YP_001501824.1| DNA replication initiation factor [Shewanella pealeana ATCC 700345]
 gi|157846790|gb|ABV87289.1| Chromosomal replication initiator DnaA [Shewanella pealeana ATCC
           700345]
          Length = 236

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 66  VVILVGPSGSGKSCLANIW----SDKSRSTRFS--NIAKSLDSILIDTRKP---VLLEDI 116
            V L GP  SG++ L +      +D  RS+ +    I  S+ + L++  +    V ++D+
Sbjct: 48  AVFLWGPEKSGRTHLMHAACAHANDLGRSSFYIPLGIHASISTALLEGLEKLDLVCIDDV 107

Query: 117 DLLDFN---DTQLFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           D +  +   +  +F + N I  Q   SL+++A   P   G  LPDL SR++     ++  
Sbjct: 108 DAIAGHPLWEEAIFDLYNRISEQKTCSLVVSASVSPSDSGFSLPDLVSRMQWGLNYQLQP 167

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
             D+     + +  A R + + + +  +++ R+ R L     ++D++D  ++     +T 
Sbjct: 168 MADEEKLAALQRRAAMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQRKLTI 227

Query: 233 SLAAEVLK 240
               E+L+
Sbjct: 228 PFIKEMLR 235


>gi|260582654|ref|ZP_05850443.1| DnaA regulatory inactivator Hda [Haemophilus influenzae NT127]
 gi|260094326|gb|EEW78225.1| DnaA regulatory inactivator Hda [Haemophilus influenzae NT127]
          Length = 231

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             KV+      R   +  + A +++ R+ R +    + +D +D  +L     +T     E
Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|24374406|ref|NP_718449.1| DNA replication initiation factor [Shewanella oneidensis MR-1]
 gi|24348974|gb|AAN55893.1|AE015726_1 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 236

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 6/154 (3%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTART 146
           S ST      + LD I ID      ++DI      +  +F + N + +    +L+++ R+
Sbjct: 87  SISTALLEGLEQLDLICIDD-----VDDIAGHPVWEEAIFDLYNRVAENKRCALVVSGRS 141

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P   G  LPDL SR++     ++    DD     + +  A R + + + +  +++ RM 
Sbjct: 142 APADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQRRAAMRGLQLPEDVGRFLLNRMA 201

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R L     ++DK+D  +L     +T   A E+L 
Sbjct: 202 RDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235


>gi|325130189|gb|EGC52963.1| DnaA regulatory inactivator Hda [Neisseria meningitidis OX99.30304]
          Length = 147

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           LF I N         L+    +     V   DL +R+    V ++    D      +  M
Sbjct: 28  LFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASM 87

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK--ETQ 243
            A RQ+ +D ++  Y+++   R +     ++D +DN A++ G  IT  L  ++LK  ETQ
Sbjct: 88  AAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQETQ 147


>gi|229845047|ref|ZP_04465183.1| DNA replication initiation factor [Haemophilus influenzae 6P18H1]
 gi|229812019|gb|EEP47712.1| DNA replication initiation factor [Haemophilus influenzae 6P18H1]
          Length = 231

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             +V+      R   +  + A +++ R+ R +    + +D +D  +L     +T     E
Sbjct: 168 KVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|221633151|ref|YP_002522376.1| chromosomal replication initiator protein DnaA [Thermomicrobium
           roseum DSM 5159]
 gi|254777921|sp|B9L0U6|DNAA_THERP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|221156567|gb|ACM05694.1| chromosomal replication initiator protein DnaA [Thermomicrobium
           roseum DSM 5159]
          Length = 465

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 76/160 (47%), Gaps = 19/160 (11%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145
           R+  F N  +++D ++ID        DI  +   ++   + FH  N+++Q    +++++ 
Sbjct: 205 RTDDFRNRYRTIDILMID--------DIQFIAGKESTQEEFFHTFNALYQSGKQIVISSD 256

Query: 146 TFPVSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
             P      +PDL  RL+       +  I  PD +  + ++++   +  + +   +  ++
Sbjct: 257 RPPR----LIPDLADRLRSRFEGGLLADIQPPDLETRQAILIEKGRELGVQMPSDVVEFV 312

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +R+E ++   E  ++++  LA      IT +LA E L+E
Sbjct: 313 ARRIESNIRELEGALNRIVALAQLTHQPITLALAVEALRE 352


>gi|68250242|ref|YP_249354.1| DNA replication initiation factor [Haemophilus influenzae 86-028NP]
 gi|68058441|gb|AAX88694.1| predicted ATPase involved in DNA replication initiation
           [Haemophilus influenzae 86-028NP]
          Length = 231

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             +V+      R   +  + A +++ R+ R +    + +D +D  +L     +T     E
Sbjct: 168 KVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|145629279|ref|ZP_01785078.1| hypothetical protein CGSHi22121_10765 [Haemophilus influenzae
           22.1-21]
 gi|145639207|ref|ZP_01794814.1| hypothetical protein CGSHiII_04194 [Haemophilus influenzae PittII]
 gi|144978782|gb|EDJ88505.1| hypothetical protein CGSHi22121_10765 [Haemophilus influenzae
           22.1-21]
 gi|145271769|gb|EDK11679.1| hypothetical protein CGSHiII_04194 [Haemophilus influenzae PittII]
 gi|309750783|gb|ADO80767.1| DNA replication initiation factor Had [Haemophilus influenzae
           R2866]
          Length = 231

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             KV+      R   +  + A +++ R+ R +    + +D +D  +L     +T     E
Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|319776111|ref|YP_004138599.1| ATPase involved in DNA replication initiation [Haemophilus
           influenzae F3047]
 gi|317450702|emb|CBY86922.1| predicted ATPase involved in DNA replication initiation
           [Haemophilus influenzae F3047]
          Length = 231

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQNVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             KV+      R   +  + A +++ R+ R +    + +D +D  +L     +T     E
Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|332288919|ref|YP_004419771.1| chromosomal replication initiation protein [Gallibacterium anatis
           UMN179]
 gi|330431815|gb|AEC16874.1| chromosomal replication initiation protein [Gallibacterium anatis
           UMN179]
          Length = 455

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++LID        DI      + +  + FH  NS+ +    +++T+  +P
Sbjct: 209 KFKKFYRSLDALLID--------DIQFFAGKEGSQEEFFHTFNSLFEGGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR      V I  P+ +    +++K   +  I + +++A +I Q++  +
Sbjct: 261 KEIDKIEERLKSRFNWGLSVAIEPPELETRVAILLKKAEESNIVLPEEVAFFIGQKLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++   A   G  IT     E LK+
Sbjct: 321 VRELEGALNRVSANANFTGQPITIDFVRETLKD 353


>gi|167624256|ref|YP_001674550.1| DNA replication initiation factor [Shewanella halifaxensis HAW-EB4]
 gi|167354278|gb|ABZ76891.1| Chromosomal replication initiator DnaA [Shewanella halifaxensis
           HAW-EB4]
          Length = 236

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 23/193 (11%)

Query: 66  VVILVGPSGSGKSCLANIW----SDKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDLL 119
            V L GP  SG++ L +      +D  RS+ +    I  S+ + L++      LE +DL+
Sbjct: 48  AVFLWGPEKSGRTHLMHAACAHANDLGRSSFYIPLGIHASISTALLEG-----LEKLDLV 102

Query: 120 DFNDTQ-----------LFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             +D             +F + N I  Q   SL+++A   P   G  LPDL SR++    
Sbjct: 103 CIDDVNAIAGHPLWEEAIFDLYNRISEQKTCSLIVSASVSPSDSGFSLPDLVSRMQWGLN 162

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            ++    D+     + +  A R + + + +  +++ R+ R L     ++D++D  ++   
Sbjct: 163 YQLQPMADEEKLAALQRRAAMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQ 222

Query: 228 MGITRSLAAEVLK 240
             +T     E+L+
Sbjct: 223 RKLTIPFIKEMLR 235


>gi|315659995|ref|ZP_07912853.1| DNA-directed DNA replication initiator protein [Staphylococcus
           lugdunensis M23590]
 gi|315494896|gb|EFU83233.1| DNA-directed DNA replication initiator protein [Staphylococcus
           lugdunensis M23590]
          Length = 467

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ +  +++++   P         L SR +   +
Sbjct: 230 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 289

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 290 VDITPPDYETRMAILQKKMEEENLEIPMEALNYIANQIQSNIRELEGALTRLLAYSQLQG 349

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L AE LK+  Q 
Sbjct: 350 RPITTELTAEALKDIIQV 367


>gi|328773026|gb|EGF83063.1| hypothetical protein BATDEDRAFT_18251 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 292

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 10/75 (13%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWSDK 87
           +S +D++   A +QA+R I   P+           P+R V+L GP G+GK+ LA   + +
Sbjct: 16  VSWEDIVGLDAAKQALREIVVLPNLRPELFTGLRAPARGVLLFGPPGTGKTMLAKALAKE 75

Query: 88  SRSTRFSNIAKSLDS 102
           S++T FS  A +L S
Sbjct: 76  SKATFFSISASTLTS 90


>gi|289551834|ref|YP_003472738.1| Chromosomal replication initiator protein DnaA [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181365|gb|ADC88610.1| Chromosomal replication initiator protein DnaA [Staphylococcus
           lugdunensis HKU09-01]
          Length = 455

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ +  +++++   P         L SR +   +
Sbjct: 218 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 277

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 278 VDITPPDYETRMAILQKKMEEENLEIPMEALNYIANQIQSNIRELEGALTRLLAYSQLQG 337

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L AE LK+  Q 
Sbjct: 338 RPITTELTAEALKDIIQV 355


>gi|302335416|ref|YP_003800623.1| ABC transporter related protein [Olsenella uli DSM 7084]
 gi|301319256|gb|ADK67743.1| ABC transporter related protein [Olsenella uli DSM 7084]
          Length = 580

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 19/140 (13%)

Query: 51  QAVRLIDS--WPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNI-AKSLDSI 103
           Q  R++DS  + +    V  LVGPSGSGKS      A +W   S + R   +   ++D  
Sbjct: 347 QGERVLDSVSFTAREGEVTALVGPSGSGKSTCARLAARLWDASSGTVRVGGVDVSTVDPE 406

Query: 104 LIDTRKPVLLEDIDLLDFNDTQLFHI-INSIHQYDSSLLMTART---------FPVSWGV 153
           ++     V+ +D+ L  F+DT + +I +      D  +L  AR           P  +  
Sbjct: 407 VLLADYAVVFQDVTL--FDDTVMANIRLGRKDATDEEVLAAARAANCDGFVGQLPQGYDT 464

Query: 154 CLPDLCSRLKAATVVKISLP 173
            + +  SRL      +IS+ 
Sbjct: 465 VIGENGSRLSGGERQRISIA 484


>gi|269925124|ref|YP_003321747.1| chromosomal replication initiator protein DnaA [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269788784|gb|ACZ40925.1| chromosomal replication initiator protein DnaA [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 456

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 11/159 (6%)

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMT 143
           + R+  F    +S+D +LID        DI  +   ++   + FH  N +H  +  ++MT
Sbjct: 203 EHRTEEFRARYRSIDILLID--------DIQFIAGKESTQEEFFHTFNHLHGANKQIVMT 254

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +   P +       L SR +   + +++LPD +    ++     ++ + +   +   I +
Sbjct: 255 SDRPPKAIATLQDRLRSRFEGGLMTEVNLPDLETRIAILRIKAENKGVDLPDDVLELIAR 314

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +++ ++   E  ++ +  LA   G  IT + AAE L +T
Sbjct: 315 KVQSNIRELEGALNSIVALARLTGEPITLATAAEALNDT 353


>gi|329123275|ref|ZP_08251843.1| DnaA regulatory inactivator Hda [Haemophilus aegyptius ATCC 11116]
 gi|327471484|gb|EGF16932.1| DnaA regulatory inactivator Hda [Haemophilus aegyptius ATCC 11116]
          Length = 236

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 53  GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQNVIG 112

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 113 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 172

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             KV+      R   +  + A +++ R+ R +    + +D +D  +L     +T     E
Sbjct: 173 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 232

Query: 238 VL 239
           +L
Sbjct: 233 IL 234


>gi|242399236|ref|YP_002994660.1| ABC-type cobalt transport system, ATPase component [Thermococcus
           sibiricus MM 739]
 gi|242265629|gb|ACS90311.1| ABC-type cobalt transport system, ATPase component [Thermococcus
           sibiricus MM 739]
          Length = 262

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           V++  + A+R +D   +  + +V LVGP+GSGK+ L                AK L+ +L
Sbjct: 10  VYNGKKAAIRGVDL--TIGNEIVALVGPNGSGKTTL----------------AKHLNGLL 51

Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWG 152
             T+  V+++ +D  +++  +L  ++  + Q   ++      F  VS+G
Sbjct: 52  KPTKGNVVVDGMDTREYSVAELARVVGYVFQNPENMFFEENVFKEVSFG 100


>gi|145636912|ref|ZP_01792577.1| DNA replication initiation factor [Haemophilus influenzae PittHH]
 gi|145269993|gb|EDK09931.1| DNA replication initiation factor [Haemophilus influenzae PittHH]
          Length = 231

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             KV+      R   +  + A +++ R+ R +    K +D +D  +L     +T     +
Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNLTIPFVKK 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|113461486|ref|YP_719555.1| DNA replication initiation factor [Haemophilus somnus 129PT]
 gi|112823529|gb|ABI25618.1| regulatory inactivation of DnaA Hda protein [Haemophilus somnus
           129PT]
          Length = 231

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 126 LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +F ++N I +  S+LL+ +A   PV+  + LPDL SRL    + +++  ++    +VI +
Sbjct: 115 IFDLMNRIKESGSTLLLISANQSPVNLNISLPDLASRLSWGEIYQLNPLNEQQKVEVIKR 174

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
               R I +    A ++++R++R +      +  +D  +L     +T     E+L 
Sbjct: 175 NAHQRGIELPDDTANFLLKRLDRDIKSLFDTLTLLDKASLQAQRKLTIPFVKEILN 230


>gi|161525794|ref|YP_001580806.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC
           17616]
 gi|160343223|gb|ABX16309.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC
           17616]
          Length = 315

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG+S  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 117 PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 176

Query: 120 -DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D     LF++ N +  + SS  + A            DL +RL    V  +S P  D  
Sbjct: 177 SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLS-PLSDAG 235

Query: 179 EKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
           +  ++++ A +R I +   +AAY++    R +     L+D +D  +L +   +T  L   
Sbjct: 236 KIDVLRLAAKERGITLTDDVAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRR 295

Query: 238 VL 239
           +L
Sbjct: 296 ML 297


>gi|218667999|ref|YP_002426314.1| hypothetical protein AFE_1901 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218520212|gb|ACK80798.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 236

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 14/155 (9%)

Query: 67  VILVGPSGSGKS-------CLANIWS---DKSRSTRFSNIAKSLDSILIDTRKPVL-LED 115
           + L GP G GKS            W+   D     +  N  K L+        P+L L++
Sbjct: 45  LYLYGPGGVGKSHLLLGAASALAGWTPYMDCGDVPQLFNRIKDLEGFSSLVAAPLLCLDN 104

Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I++       +T LF + N        +L+  R  P      LPD  SR  A   V + L
Sbjct: 105 IEVWAGQRDKETFLFDLYNERMSNGRPMLLAGRAAPRFLDWALPDWASRASACLQVALRL 164

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           PDD     ++ +M   R + I  + A Y+++   R
Sbjct: 165 PDDTERMAILQEMAQRRGLQIGVEAAHYLLRHHAR 199


>gi|198283684|ref|YP_002220005.1| DnaA regulatory inactivator Hda [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198248205|gb|ACH83798.1| DnaA regulatory inactivator Hda [Acidithiobacillus ferrooxidans
           ATCC 53993]
          Length = 237

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 14/155 (9%)

Query: 67  VILVGPSGSGKS-------CLANIWS---DKSRSTRFSNIAKSLDSILIDTRKPVL-LED 115
           + L GP G GKS            W+   D     +  N  K L+        P+L L++
Sbjct: 46  LYLYGPGGVGKSHLLLGAASALAGWTPYMDCGDVPQLFNRIKDLEGFSSLVAAPLLCLDN 105

Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I++       +T LF + N        +L+  R  P      LPD  SR  A   V + L
Sbjct: 106 IEVWAGQRDKETFLFDLYNERMSNGRPMLLAGRAAPRFLDWALPDWASRASACLQVALRL 165

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           PDD     ++ +M   R + I  + A Y+++   R
Sbjct: 166 PDDTERMAILQEMAQRRGLQIGVEAAHYLLRHHAR 200


>gi|148827064|ref|YP_001291817.1| DNA replication initiation factor [Haemophilus influenzae PittGG]
 gi|148718306|gb|ABQ99433.1| DNA replication initiation factor [Haemophilus influenzae PittGG]
          Length = 185

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 13/183 (7%)

Query: 70  VGPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLD 120
           +G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ ++ V L+D+  + 
Sbjct: 1   MGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVI 60

Query: 121 FNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
            ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+
Sbjct: 61  GNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDE 120

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
              KV+      R   +  + A +++ R+ R +    + +D +D  +L     +T     
Sbjct: 121 QKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVK 180

Query: 237 EVL 239
           E+L
Sbjct: 181 EIL 183


>gi|239637286|ref|ZP_04678273.1| chromosomal replication initiator protein DnaA [Staphylococcus
           warneri L37603]
 gi|239597123|gb|EEQ79633.1| chromosomal replication initiator protein DnaA [Staphylococcus
           warneri L37603]
          Length = 454

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +H  +  +++++   P         L SR +   +
Sbjct: 217 LLIDDIQFIQNKEQTQEEFFHTFNELHNNNKQIVISSDRPPKEISKLSDRLRSRFEWGLI 276

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 277 VDITPPDYETRMAILQKKIEEENLDIPMESLNYIANQIQSNIRELEGALTRLLAYSQLQG 336

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  LAAE LK+  Q 
Sbjct: 337 KPITTELAAEALKDIIQA 354


>gi|330685249|gb|EGG96910.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis VCU121]
          Length = 454

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +H  +  +++++   P         L SR +   +
Sbjct: 217 LLIDDIQFIQNKEQTQEEFFHTFNELHNNNKQIVISSDRPPKEISKLSDRLRSRFEWGLI 276

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 277 VDITPPDYETRMAILQKKIEEENLDIPMESLNYIANQIQSNIRELEGALTRLLAYSQLQG 336

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  LAAE LK+  Q 
Sbjct: 337 KPITTELAAEALKDIIQA 354


>gi|319896920|ref|YP_004135115.1| atpase regulatory factor involved in dnaa inactivation [Haemophilus
           influenzae F3031]
 gi|317432424|emb|CBY80779.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus
           influenzae F3031]
          Length = 231

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ +  V L+D+  +  
Sbjct: 48  GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQALVCLDDLQSVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             KV+      R   +  + A +++ R+ R +    + +D +D  +L     +T     E
Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|289762735|ref|ZP_06522113.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis GM 1503]
 gi|289710241|gb|EFD74257.1| glutamine-transport ATP-binding protein ABC transporter glnQ
          [Mycobacterium tuberculosis GM 1503]
          Length = 215

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 7/67 (10%)

Query: 37 GISRDDLLV-HSAIEQAVRLID--SWPSWPSRVVILVGPSGSGK----SCLANIWSDKSR 89
          G++  DL+V +S+   AVR ID  S    P  +VIL+GPSG GK    SCL  I   KS 
Sbjct: 3  GLTISDLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSCLGGILRPKSG 62

Query: 90 STRFSNI 96
          S +F ++
Sbjct: 63 SIKFDDV 69


>gi|221200988|ref|ZP_03574028.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2M]
 gi|221206560|ref|ZP_03579573.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2]
 gi|221214417|ref|ZP_03587388.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD1]
 gi|221165674|gb|EED98149.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD1]
 gi|221173869|gb|EEE06303.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2]
 gi|221178838|gb|EEE11245.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2M]
          Length = 244

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG+S  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 46  PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFAFDPRIGIYAIDDCDRM 105

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             +DTQ   LF++ N +  + SS  + A            DL +RL    V  +S   D 
Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPLSDA 163

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
              +V+     +R I +   +AAY++    R +     L+D +D  +L +   +T  L  
Sbjct: 164 GKIEVLRLAAKERGITLTDDVAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223

Query: 237 EVL 239
            +L
Sbjct: 224 RML 226


>gi|228470045|ref|ZP_04054956.1| chromosomal replication initiator protein DnaA [Porphyromonas
           uenonis 60-3]
 gi|228308319|gb|EEK17168.1| chromosomal replication initiator protein DnaA [Porphyromonas
           uenonis 60-3]
          Length = 475

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/202 (18%), Positives = 83/202 (41%), Gaps = 33/202 (16%)

Query: 69  LVGPSGSGKSCLAN---------------------------IWSDKSRSTR-FSNIAKSL 100
           + GPSG GK+ L +                           + + ++ +T  F N  + +
Sbjct: 179 IYGPSGVGKTHLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQV 238

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           D +LID  + ++ +    L F     F + N ++     +++T+ T PV+       L S
Sbjct: 239 DVLLIDDIQGLIAKKKTQLTF-----FQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLIS 293

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R+  +  +++  PD D  ++ +     +    + +++  YI + +  S+   + +   + 
Sbjct: 294 RIAGSLTIEVERPDYDLRKEYLRHKSEESGSILPREMIDYIARTVTSSIRGLQGVFFSLI 353

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             A   G  IT S   +++ +T
Sbjct: 354 TRAAVEGCDITSSFVKKIVSQT 375


>gi|170718408|ref|YP_001783630.1| DNA replication initiation factor [Haemophilus somnus 2336]
 gi|168826537|gb|ACA31908.1| Chromosomal replication initiator DnaA [Haemophilus somnus 2336]
          Length = 231

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 126 LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +F ++N I +  S+LL+ +A   PV+  + LPDL SRL    + +++  ++    +VI +
Sbjct: 115 IFDLMNRIKESGSTLLLISANQSPVNLNISLPDLASRLSWGEIYQLNPLNEQQKVEVIKR 174

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
               R I +    A ++++R++R +      +  +D  +L     +T     E+L 
Sbjct: 175 NAHQRGIELPDDTANFLLKRLDRDIKSLFDTLTLLDKASLQAQRKLTIPFVKEILN 230


>gi|312200584|ref|YP_004020645.1| ABC transporter [Frankia sp. EuI1c]
 gi|311231920|gb|ADP84775.1| ABC transporter related protein [Frankia sp. EuI1c]
          Length = 239

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI--AKSLDSILIDTRKPVLLEDIDLL 119
           WP   V + GPSGSGKS L NI +   R+   S +   +SL   L +TR   L      +
Sbjct: 40  WPGEFVAVTGPSGSGKSTLLNIIAGLERADGGSVVVAGQSLAE-LSETRLARLRRRHVGM 98

Query: 120 DFNDTQLFHIINSIHQYDSSLL 141
            F   Q FH++ S+   D+ +L
Sbjct: 99  VF---QFFHLLESMTAADNVVL 117


>gi|282853039|ref|ZP_06262376.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes J139]
 gi|282582492|gb|EFB87872.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes J139]
          Length = 500

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQSVDISLAEVVLKD 396


>gi|194467403|ref|ZP_03073390.1| chromosomal replication initiator protein DnaA [Lactobacillus
           reuteri 100-23]
 gi|194454439|gb|EDX43336.1| chromosomal replication initiator protein DnaA [Lactobacillus
           reuteri 100-23]
          Length = 440

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 111 VLLEDIDLL-DFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L +   TQL  F+  N++H     ++MT+   P         L SR +    
Sbjct: 205 LLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLT 264

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V+I+ PD +    ++     +  I I      YI  +++ ++   E  + K+   A   G
Sbjct: 265 VEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSG 324

Query: 228 MGITRSLAAEVLK 240
             IT SLA++ LK
Sbjct: 325 ERITPSLASQALK 337


>gi|227543719|ref|ZP_03973768.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri CF48-3A]
 gi|300908784|ref|ZP_07126247.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri SD2112]
 gi|154705516|gb|ABS84184.1| chromosomal replication initiator protein DnaA [Lactobacillus
           reuteri]
 gi|227186287|gb|EEI66358.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri CF48-3A]
 gi|300894191|gb|EFK87549.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri SD2112]
          Length = 440

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 111 VLLEDIDLL-DFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L +   TQL  F+  N++H     ++MT+   P         L SR +    
Sbjct: 205 LLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLT 264

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V+I+ PD +    ++     +  I I      YI  +++ ++   E  + K+   A   G
Sbjct: 265 VEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSG 324

Query: 228 MGITRSLAAEVLK 240
             IT SLA++ LK
Sbjct: 325 ERITPSLASQALK 337


>gi|78485860|ref|YP_391785.1| Lipid A export ATP-binding/permease protein MsbA [Thiomicrospira
           crunogena XCL-2]
 gi|122064529|sp|Q31FG2|MSBA_THICR RecName: Full=Lipid A export ATP-binding/permease protein MsbA
 gi|78364146|gb|ABB42111.1| Lipid A export ATP-binding/permease protein MsbA [Thiomicrospira
           crunogena XCL-2]
          Length = 581

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 16/101 (15%)

Query: 61  SWPSR-VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK---SLDSILIDT------RKP 110
           S P+R    LVG SGSGK+ LAN+       TRF  +     ++D I +D       R  
Sbjct: 362 SIPARKTTALVGQSGSGKTTLANLI------TRFYQVNHGTITIDGIALDEIELNNLRAN 415

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     +++ FNDT   +I     +YD   +M A     +W
Sbjct: 416 IAFVSQNVVLFNDTIAANIAYGHEEYDEQAIMNAAKAAHAW 456


>gi|148543244|ref|YP_001270614.1| chromosomal replication initiation protein [Lactobacillus reuteri
           DSM 20016]
 gi|184152656|ref|YP_001840997.1| chromosomal replication initiation protein [Lactobacillus reuteri
           JCM 1112]
 gi|227364307|ref|ZP_03848400.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri MM2-3]
 gi|325683506|ref|ZP_08163022.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus
           reuteri MM4-1A]
 gi|167016901|sp|A5VHF3|DNAA_LACRD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735822|sp|B2G4Y5|DNAA_LACRJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|148530278|gb|ABQ82277.1| chromosomal replication initiator protein DnaA [Lactobacillus
           reuteri DSM 20016]
 gi|183224000|dbj|BAG24517.1| chromosomal replication initiator protein DnaA [Lactobacillus
           reuteri JCM 1112]
 gi|227070620|gb|EEI08950.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri MM2-3]
 gi|324977856|gb|EGC14807.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus
           reuteri MM4-1A]
          Length = 440

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 111 VLLEDIDLL-DFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L +   TQL  F+  N++H     ++MT+   P         L SR +    
Sbjct: 205 LLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLT 264

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V+I+ PD +    ++     +  I I      YI  +++ ++   E  + K+   A   G
Sbjct: 265 VEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSG 324

Query: 228 MGITRSLAAEVLK 240
             IT SLA++ LK
Sbjct: 325 ERITPSLASQALK 337


>gi|260885410|ref|ZP_05734994.2| bacterial DnaA protein helix-turn-helix protein [Prevotella
           tannerae ATCC 51259]
 gi|260852301|gb|EEX72170.1| bacterial DnaA protein helix-turn-helix protein [Prevotella
           tannerae ATCC 51259]
          Length = 460

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 22/128 (17%)

Query: 69  LVGPSGSGKSCLAN------IWSDKSRSTRF--SNIAKS--LDSILIDTRKPVL--LEDI 116
           L GPSG GK+ L N      + S   R   +  +++ K+   DS+L +T    +   + I
Sbjct: 165 LYGPSGVGKTHLVNAIGLRILESQPERRVLYVPAHLFKTQYTDSVLHNTINDFIHFYQTI 224

Query: 117 DLLDFNDTQ----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           D+L  +D Q           FHI N + Q    +++T    PV +      + +R K  T
Sbjct: 225 DVLIIDDIQEITTAKTQQAFFHIFNHLQQNGRQIIITCDRAPVDFEGIEERMLTRFKWGT 284

Query: 167 VVKISLPD 174
           V ++  PD
Sbjct: 285 VTEMEKPD 292


>gi|170717207|ref|YP_001783356.1| chromosomal replication initiation protein [Haemophilus somnus
           2336]
 gi|168825336|gb|ACA30707.1| chromosomal replication initiator protein DnaA [Haemophilus somnus
           2336]
          Length = 455

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 13/182 (7%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--- 119
           P   V+ +      +S +  + SD+  S  F    +++D++LID        DI      
Sbjct: 182 PHAQVVYMHAERFMQSYVKALKSDRMDS--FKRFYRTVDALLID--------DIQFFAGK 231

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           D    + FHI NS+ +    +++T+  +P         L SR      V I  P+ +   
Sbjct: 232 DGTQEEFFHIFNSLFERGRQIILTSDRYPKEIEKIEDRLKSRFGWGISVAIEPPELETRV 291

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   ++ + + +++A +I  ++  ++   E  ++++   A   G  IT     E L
Sbjct: 292 AILLKKAEEKNMVLPEEVAMFIGGKLRTNVRELEGALNRVHAHAEFTGKAITIDFVRETL 351

Query: 240 KE 241
           K+
Sbjct: 352 KD 353


>gi|319785621|ref|YP_004145096.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464133|gb|ADV25865.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 445

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    + +D++LID        DI      D    + FH  NS+      ++MT   +P
Sbjct: 199 QFKRQFQQIDALLID--------DIQFFAGKDRTQEEFFHTFNSLFDSRQQIIMTCDRYP 250

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                  P L SRL     V I  PD +    +++    +R   +  ++A  + ++M  +
Sbjct: 251 REVDGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGTVVPDEVAFLLAKKMRSN 310

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++ +   A   G  I+   A E L++
Sbjct: 311 VRDLEGALNTLAARANFTGRAISVEFAQETLRD 343


>gi|330791557|ref|XP_003283859.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum]
 gi|325086245|gb|EGC39638.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum]
          Length = 851

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPVL 112
           +L++S+   P + ++L GP G+GK+ LA I S+++ +T F+ N A  LD     T K +L
Sbjct: 319 KLLNSFGIKPPKGILLYGPPGTGKTLLARIVSNQTNATLFTINGADILDKFYGMTEKTLL 378


>gi|227530356|ref|ZP_03960405.1| ABC superfamily ATP binding cassette transporter ABC protein
           [Lactobacillus vaginalis ATCC 49540]
 gi|227349717|gb|EEJ40008.1| ABC superfamily ATP binding cassette transporter ABC protein
           [Lactobacillus vaginalis ATCC 49540]
          Length = 290

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 86/180 (47%), Gaps = 23/180 (12%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------NIAKSLDSILIDTRK 109
           S+   P+++  L+G +G+GKS L N+ S++   T  S        N  ++LD I +    
Sbjct: 24  SFTLEPAKIYGLLGRNGAGKSTLLNLISNRIFPTSGSIKLGDQEVNTDQTLDKIFLIGED 83

Query: 110 PVLLEDIDLLDFNDTQLFHIINSIH---QYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +  + + +      Q+F + +  +    Y ++  M  + F +        L +  K A 
Sbjct: 84  NLYYKQVKI-----NQMFDLADGAYGNFDYQNAEQML-KQFELDGNQKFAKLSTGQKTAA 137

Query: 167 VVKISL---PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            + ++L    D  FL++ ++ + A+ R+IF  + + +Y  Q+  R++V +  L+D++  L
Sbjct: 138 KISLALNVDADYIFLDEPVLGLDANHREIFYQELIKSY--QKRPRTIVLSTHLIDEIQQL 195


>gi|113460282|ref|YP_718341.1| chromosomal replication initiation protein [Haemophilus somnus
           129PT]
 gi|123031085|sp|Q0I0Y7|DNAA_HAES1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|112822325|gb|ABI24414.1| chromosomal replication initiator protein DnaA [Haemophilus somnus
           129PT]
          Length = 452

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 11/156 (7%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145
           R   F    +++D++LID        DI      D    + FHI NS+ +    +++T+ 
Sbjct: 203 RMDSFKRFYRTVDALLID--------DIQFFAGKDGTQEEFFHIFNSLFERGRQIILTSD 254

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
            +P         L SR      V I  P+ +    +++K   ++ + + +++A +I  ++
Sbjct: 255 RYPKEIEKIEDRLKSRFGWGISVAIEPPELETRVAILLKKAEEKNMVLPEEVAMFIGGKL 314

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             ++   E  ++++   A   G  IT     E LK+
Sbjct: 315 RTNVRELEGALNRVHAHAEFTGKAITIDFVRETLKD 350


>gi|314922677|gb|EFS86508.1| replication initiator protein DnaA [Propionibacterium acnes
           HL001PA1]
 gi|314982903|gb|EFT26995.1| replication initiator protein DnaA [Propionibacterium acnes
           HL110PA3]
 gi|315091209|gb|EFT63185.1| replication initiator protein DnaA [Propionibacterium acnes
           HL110PA4]
 gi|315094443|gb|EFT66419.1| replication initiator protein DnaA [Propionibacterium acnes
           HL060PA1]
 gi|315105163|gb|EFT77139.1| replication initiator protein DnaA [Propionibacterium acnes
           HL050PA2]
 gi|327328938|gb|EGE70698.1| DNA-directed DNA replication initiator protein [Propionibacterium
           acnes HL103PA1]
          Length = 474

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQSVDISLAEVVLKD 370


>gi|189349485|ref|YP_001945113.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC
           17616]
 gi|189333507|dbj|BAG42577.1| similar to chromosomal replication initiator protein DnaA
           [Burkholderia multivorans ATCC 17616]
          Length = 244

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 63  PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119
           P R   + G  GSG+S  L  + SD S    R+      L +   D R  +  ++D D +
Sbjct: 46  PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
             +DTQ   LF++ N +  + SS  + A            DL +RL    V  +S P  D
Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLS-PLSD 162

Query: 177 FLEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
             +  ++++ A +R I +   +AAY++    R +     L+D +D  +L +   +T  L 
Sbjct: 163 AGKIDVLRLAAKERGITLTDDVAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLL 222

Query: 236 AEVL 239
             +L
Sbjct: 223 RRML 226


>gi|327457414|gb|EGF04069.1| replication initiator protein DnaA [Propionibacterium acnes
           HL092PA1]
          Length = 500

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 396


>gi|311695769|gb|ADP98642.1| urea ABC transporter, ATP-binding protein UrtD [marine bacterium
           HP15]
          Length = 274

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 13/182 (7%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128
           ++GP+G+GK+ + +I + K+R    S    S  ++L      +    I    F    +F 
Sbjct: 62  IIGPNGAGKTTMMDIITGKTRPDTGSVWFGSRHNLLTMNEPDIASLGIGR-KFQKPTVFE 120

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR------------LKAATVVKISLPDDD 176
            +      + ++    R FP    +   +   R            L+      +S     
Sbjct: 121 ALTVFENLELAMATDKRVFPTLTAIMKAEYRDRIDEVLEMIGLESLRDRLACILSHGQKQ 180

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
           +LE  ++ M   R + +D+ +A    Q MER+      L  K   + +   MG  RS+A 
Sbjct: 181 WLEIGMLLMQKPRLLLVDEPVAGMTEQEMERTAELLTSLAGKQSVVVVEHDMGFVRSIAR 240

Query: 237 EV 238
           +V
Sbjct: 241 KV 242


>gi|332288487|ref|YP_004419339.1| DNA replication initiation factor [Gallibacterium anatis UMN179]
 gi|330431383|gb|AEC16442.1| DNA replication initiation factor [Gallibacterium anatis UMN179]
          Length = 253

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 123 DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
           +  +F + N I +   +LL M+A   P    + LPDL SRL      +++   DD    V
Sbjct: 134 EVAIFDLFNRIKETGKTLLLMSADQPPQQLPIKLPDLRSRLSWGETYQLAELSDDKKAAV 193

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + +    + + +  ++A +++ R++R L +   +++K+D  +L     +T     E L
Sbjct: 194 LQQAARKQGLELPDEVAKFLLNRLDRDLTYLFSVLEKLDKASLQAQRKLTIPFVKEQL 251


>gi|314926333|gb|EFS90164.1| replication initiator protein DnaA [Propionibacterium acnes
           HL036PA3]
          Length = 500

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 396


>gi|270158123|ref|ZP_06186780.1| DnaA regulatory inactivator Hda [Legionella longbeachae D-4968]
 gi|289163612|ref|YP_003453750.1| ATPase regulatory factor involved in DnaA inactivation [Legionella
           longbeachae NSW150]
 gi|269990148|gb|EEZ96402.1| DnaA regulatory inactivator Hda [Legionella longbeachae D-4968]
 gi|288856785|emb|CBJ10596.1| ATPase regulatory factor involved in DnaA inactivation [Legionella
           longbeachae NSW150]
          Length = 230

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 18/192 (9%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLD 120
           +R++ L G SGSGKS L        +    +  A  L   L+    P  +E I+   L+ 
Sbjct: 41  NRLLYLWGVSGSGKSHLLQA---CCQEVNLTQSAIYLPLALLKEWGPQTIEGIEDQTLIC 97

Query: 121 FNDTQ-----------LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVV 168
            +D             LFH+ N +   + ++L+ +    P +  + LPDL SRL    V+
Sbjct: 98  IDDIHIIATDSIWEEALFHLYNKVKDSERNILIISGNQSPATIPIKLPDLRSRLSWGLVI 157

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           ++   DD      +      R   +   +  +++ R  R++     +++++D+ +L+   
Sbjct: 158 QLMELDDQDKINTLKHHALKRGFDLPDSVGQFLLNRCSRNMHDLHHILNRLDDASLAAQR 217

Query: 229 GITRSLAAEVLK 240
            IT     ++L 
Sbjct: 218 KITIPFVKDILN 229


>gi|50841497|ref|YP_054724.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes KPA171202]
 gi|289424325|ref|ZP_06426108.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes SK187]
 gi|289427361|ref|ZP_06429074.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes J165]
 gi|295129530|ref|YP_003580193.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes SK137]
 gi|61212561|sp|Q6ABL5|DNAA_PROAC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|50839099|gb|AAT81766.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes KPA171202]
 gi|289155022|gb|EFD03704.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes SK187]
 gi|289159291|gb|EFD07482.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes J165]
 gi|291377061|gb|ADE00916.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes SK137]
 gi|313771066|gb|EFS37032.1| replication initiator protein DnaA [Propionibacterium acnes
           HL074PA1]
 gi|313792568|gb|EFS40654.1| replication initiator protein DnaA [Propionibacterium acnes
           HL110PA1]
 gi|313803569|gb|EFS44751.1| replication initiator protein DnaA [Propionibacterium acnes
           HL110PA2]
 gi|313814221|gb|EFS51935.1| replication initiator protein DnaA [Propionibacterium acnes
           HL025PA1]
 gi|313821532|gb|EFS59246.1| replication initiator protein DnaA [Propionibacterium acnes
           HL036PA1]
 gi|314963873|gb|EFT07973.1| replication initiator protein DnaA [Propionibacterium acnes
           HL082PA1]
 gi|314969083|gb|EFT13181.1| replication initiator protein DnaA [Propionibacterium acnes
           HL037PA1]
 gi|314985203|gb|EFT29295.1| replication initiator protein DnaA [Propionibacterium acnes
           HL005PA1]
 gi|314987112|gb|EFT31204.1| replication initiator protein DnaA [Propionibacterium acnes
           HL005PA2]
 gi|315097162|gb|EFT69138.1| replication initiator protein DnaA [Propionibacterium acnes
           HL038PA1]
 gi|315107498|gb|EFT79474.1| replication initiator protein DnaA [Propionibacterium acnes
           HL030PA1]
 gi|315109866|gb|EFT81842.1| replication initiator protein DnaA [Propionibacterium acnes
           HL030PA2]
 gi|327444469|gb|EGE91123.1| replication initiator protein DnaA [Propionibacterium acnes
           HL013PA2]
 gi|327446723|gb|EGE93377.1| replication initiator protein DnaA [Propionibacterium acnes
           HL043PA2]
 gi|328757976|gb|EGF71592.1| replication initiator protein DnaA [Propionibacterium acnes
           HL020PA1]
 gi|332674399|gb|AEE71215.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes 266]
          Length = 500

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 396


>gi|314980257|gb|EFT24351.1| replication initiator protein DnaA [Propionibacterium acnes
           HL072PA2]
          Length = 500

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 396


>gi|313765026|gb|EFS36390.1| replication initiator protein DnaA [Propionibacterium acnes
           HL013PA1]
 gi|314930919|gb|EFS94750.1| replication initiator protein DnaA [Propionibacterium acnes
           HL067PA1]
 gi|315099342|gb|EFT71318.1| replication initiator protein DnaA [Propionibacterium acnes
           HL059PA2]
          Length = 500

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 396


>gi|94309702|ref|YP_582912.1| Lipid A export ATP-binding/permease protein MsbA [Cupriavidus
           metallidurans CH34]
 gi|122064517|sp|Q1LQD3|MSBA_RALME RecName: Full=Lipid A export ATP-binding/permease protein MsbA
 gi|93353554|gb|ABF07643.1| fused lipid transporter subunits of ABC superfamily: membrane
           component ; ATP-binding component [Cupriavidus
           metallidurans CH34]
          Length = 594

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 21/89 (23%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLAN------------IWSDKSRSTRFSNIAKSLDSILI 105
           S  + P  VV LVGPSGSGK+ L N            I  D     RF+         L 
Sbjct: 371 SLRAAPGEVVALVGPSGSGKTTLVNLVPRFFDPTEGHILLDGQPIDRFA---------LA 421

Query: 106 DTRKPVLLEDIDLLDFNDTQLFHIINSIH 134
           D R+ +     D++ FNDT   ++   +H
Sbjct: 422 DLRRQIAFVSQDVVLFNDTVAANVAYGVH 450


>gi|314917480|gb|EFS81311.1| replication initiator protein DnaA [Propionibacterium acnes
           HL050PA1]
          Length = 474

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 370


>gi|86137113|ref|ZP_01055691.1| ABC transporter, ATP-binding protein [Roseobacter sp. MED193]
 gi|85826437|gb|EAQ46634.1| ABC transporter, ATP-binding protein [Roseobacter sp. MED193]
          Length = 239

 Score = 39.3 bits (90), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 20/82 (24%)

Query: 46  HSAIEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           HSA+  A+R +D   P+    +V+L+GPSGSGKS L NI     R               
Sbjct: 23  HSAV-HALRGVDLEIPA--GDIVVLLGPSGSGKSTLLNIIGGLDRG-------------- 65

Query: 105 IDTRKPVLLEDIDLLDFNDTQL 126
             TR  V   D+ L D +D QL
Sbjct: 66  --TRGDVFFHDLCLSDMSDAQL 85


>gi|53728974|ref|ZP_00134440.2| COG0593: ATPase involved in DNA replication initiation
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208837|ref|YP_001054062.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           L20]
 gi|165976798|ref|YP_001652391.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303250541|ref|ZP_07336738.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253536|ref|ZP_07339675.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307246294|ref|ZP_07528375.1| hypothetical protein appser1_14980 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307248407|ref|ZP_07530430.1| hypothetical protein appser2_13830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250635|ref|ZP_07532575.1| hypothetical protein appser4_14110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307253015|ref|ZP_07534902.1| hypothetical protein appser6_15250 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255278|ref|ZP_07537093.1| hypothetical protein appser9_15130 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307257441|ref|ZP_07539210.1| hypothetical protein appser10_14380 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259713|ref|ZP_07541436.1| hypothetical protein appser11_15100 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261861|ref|ZP_07543525.1| hypothetical protein appser12_14200 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307264043|ref|ZP_07545643.1| hypothetical protein appser13_14480 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097629|gb|ABN74457.1| hypothetical protein APL_1373 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165876899|gb|ABY69947.1| ATPase involved in DNA replication initiation [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302647646|gb|EFL77863.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302650529|gb|EFL80688.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306852903|gb|EFM85127.1| hypothetical protein appser1_14980 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855145|gb|EFM87325.1| hypothetical protein appser2_13830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857338|gb|EFM89454.1| hypothetical protein appser4_14110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306859544|gb|EFM91570.1| hypothetical protein appser6_15250 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861827|gb|EFM93806.1| hypothetical protein appser9_15130 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306864093|gb|EFM96007.1| hypothetical protein appser10_14380 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866253|gb|EFM98118.1| hypothetical protein appser11_15100 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868478|gb|EFN00291.1| hypothetical protein appser12_14200 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870654|gb|EFN02398.1| hypothetical protein appser13_14480 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 236

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 89/189 (47%), Gaps = 20/189 (10%)

Query: 71  GPSGSGKSCL----ANIWSDKSRSTRFSNIAKS--LDSILIDTRKP---VLLEDIDLLDF 121
           G   SGKS L    +N +    +++ +  + KS     +++D  +    + L+DI ++  
Sbjct: 46  GGKSSGKSHLLKAVSNHYLLNQQTSSYIPLEKSQYFSPMVLDNAEQLDVICLDDIQIVAG 105

Query: 122 NDT---QLFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           N+     +F++ N I +        + + LL++A   P    + LPDL SRL    V ++
Sbjct: 106 NEEWELAIFNLFNLIREQQSLFGNGHKTLLLISADCPPHQLQINLPDLRSRLTWGEVYQL 165

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   DD    ++ +    + + +  ++A ++++R++R L      +D++D  +L     +
Sbjct: 166 NDLSDDQKRIILQRNAYQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKL 225

Query: 231 TRSLAAEVL 239
           T     E+L
Sbjct: 226 TVPFVKEIL 234


>gi|314965762|gb|EFT09861.1| replication initiator protein DnaA [Propionibacterium acnes
           HL082PA2]
          Length = 474

 Score = 39.3 bits (90), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 370


>gi|327334557|gb|EGE76268.1| DNA-directed DNA replication initiator protein [Propionibacterium
           acnes HL097PA1]
          Length = 474

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 370


>gi|322378946|ref|ZP_08053360.1| chromosomal replication initiation protein [Helicobacter suis HS1]
 gi|322379800|ref|ZP_08054097.1| chromosomal replication initiation protein [Helicobacter suis HS5]
 gi|321147768|gb|EFX42371.1| chromosomal replication initiation protein [Helicobacter suis HS5]
 gi|321148622|gb|EFX43108.1| chromosomal replication initiation protein [Helicobacter suis HS1]
          Length = 433

 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 27/220 (12%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS----------RSTRFSN 95
           H AI+ A ++  +  S+    V+  G  G GK+ + N   +K+           + +F N
Sbjct: 114 HLAIKVASQVAQNSGSYNP--VLFFGGVGLGKTHILNAIGNKACDRLQDVLYVTAEQFLN 171

Query: 96  ------IAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQL-----FHIINSIHQYDSSLLM 142
                    S+D       TR  +L++D+    F   Q+     FH  N++H   S ++M
Sbjct: 172 DYVFRLGNHSMDKFQDKYRTRDYLLIDDVQF--FGGKQMVQEEFFHTFNALHSQGSQIVM 229

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T+   P         L SR +   +  I  P  +    +I +      I +D  +  Y+ 
Sbjct: 230 TSDKPPRDIKGLADRLLSRFEMGMIASIQPPKLETKIAIINQKCQFNHIRMDAPVVEYLA 289

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                ++   E  + +++  A+  G+ I  SL   VLK+T
Sbjct: 290 SHTNENIRQIEGALLRLNATAMLTGVSIDLSLVEAVLKDT 329


>gi|313806856|gb|EFS45354.1| replication initiator protein DnaA [Propionibacterium acnes
           HL087PA2]
 gi|313811769|gb|EFS49483.1| replication initiator protein DnaA [Propionibacterium acnes
           HL083PA1]
 gi|313824524|gb|EFS62238.1| replication initiator protein DnaA [Propionibacterium acnes
           HL036PA2]
 gi|313826193|gb|EFS63907.1| replication initiator protein DnaA [Propionibacterium acnes
           HL063PA1]
 gi|313829189|gb|EFS66903.1| replication initiator protein DnaA [Propionibacterium acnes
           HL063PA2]
 gi|313832303|gb|EFS70017.1| replication initiator protein DnaA [Propionibacterium acnes
           HL007PA1]
 gi|313832763|gb|EFS70477.1| replication initiator protein DnaA [Propionibacterium acnes
           HL056PA1]
 gi|313839622|gb|EFS77336.1| replication initiator protein DnaA [Propionibacterium acnes
           HL086PA1]
 gi|314975198|gb|EFT19293.1| replication initiator protein DnaA [Propionibacterium acnes
           HL053PA1]
 gi|314977611|gb|EFT21706.1| replication initiator protein DnaA [Propionibacterium acnes
           HL045PA1]
 gi|314990686|gb|EFT34777.1| replication initiator protein DnaA [Propionibacterium acnes
           HL005PA3]
 gi|315078993|gb|EFT51005.1| replication initiator protein DnaA [Propionibacterium acnes
           HL053PA2]
 gi|315088015|gb|EFT59991.1| replication initiator protein DnaA [Propionibacterium acnes
           HL072PA1]
 gi|327332500|gb|EGE74235.1| DNA-directed DNA replication initiator protein [Propionibacterium
           acnes HL096PA2]
 gi|327333673|gb|EGE75390.1| DNA-directed DNA replication initiator protein [Propionibacterium
           acnes HL096PA3]
 gi|327448835|gb|EGE95489.1| replication initiator protein DnaA [Propionibacterium acnes
           HL043PA1]
 gi|328759811|gb|EGF73402.1| DNA-directed DNA replication initiator protein [Propionibacterium
           acnes HL099PA1]
          Length = 474

 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 370


>gi|311741699|ref|ZP_07715521.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303220|gb|EFQ79301.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 545

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145
           R   F    ++LD +++D        DI  L+  ++   + FH  N++HQ +  +++++ 
Sbjct: 291 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 342

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L +R +   +  I  PD +    +++K  A+    +D+ +   I  R 
Sbjct: 343 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAANDGTEVDRSVLELIASRF 402

Query: 206 ERSL 209
           E S+
Sbjct: 403 ESSI 406


>gi|150016036|ref|YP_001308290.1| ribosome-associated GTPase [Clostridium beijerinckii NCIMB 8052]
 gi|254766358|sp|A6LSK4|RSGA_CLOB8 RecName: Full=Putative ribosome biogenesis GTPase RsgA
 gi|149902501|gb|ABR33334.1| ribosome small subunit-dependent GTPase A [Clostridium beijerinckii
           NCIMB 8052]
          Length = 290

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 32/112 (28%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           E LF +  + +GI R        +E+ +R           + +  GPSG+GKS L N  S
Sbjct: 133 EVLFINAKKGIGIER--------LEEKIR---------GNITVFCGPSGAGKSTLINKLS 175

Query: 86  DKS---------------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           +K                 +TR S + +  D  ++DT     LE  DL+D N
Sbjct: 176 NKEHMETGNVSVKLGRGKHTTRHSELIEVADGYIVDTPGFSTLEIKDLMDKN 227


>gi|313815417|gb|EFS53131.1| replication initiator protein DnaA [Propionibacterium acnes
           HL059PA1]
 gi|314916213|gb|EFS80044.1| replication initiator protein DnaA [Propionibacterium acnes
           HL005PA4]
 gi|314921816|gb|EFS85647.1| replication initiator protein DnaA [Propionibacterium acnes
           HL050PA3]
 gi|314955285|gb|EFS99690.1| replication initiator protein DnaA [Propionibacterium acnes
           HL027PA1]
 gi|314959158|gb|EFT03260.1| replication initiator protein DnaA [Propionibacterium acnes
           HL002PA1]
 gi|315102317|gb|EFT74293.1| replication initiator protein DnaA [Propionibacterium acnes
           HL046PA1]
 gi|327454252|gb|EGF00907.1| replication initiator protein DnaA [Propionibacterium acnes
           HL087PA3]
 gi|327456312|gb|EGF02967.1| replication initiator protein DnaA [Propionibacterium acnes
           HL083PA2]
 gi|328756010|gb|EGF69626.1| replication initiator protein DnaA [Propionibacterium acnes
           HL087PA1]
 gi|328758853|gb|EGF72469.1| replication initiator protein DnaA [Propionibacterium acnes
           HL025PA2]
          Length = 474

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 370


>gi|118580735|ref|YP_901985.1| chromosomal replication initiator, DnaA [Pelobacter propionicus DSM
           2379]
 gi|118503445|gb|ABK99927.1| Chromosomal replication initiator, DnaA [Pelobacter propionicus DSM
           2379]
          Length = 236

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 20/212 (9%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----------ANIWSDKSRSTRFSNI 96
           +A+  A R+ D   S P R++ L GP GSGK+ L           N       S R    
Sbjct: 26  AAVRFARRITDE--SEPERLLYLHGPPGSGKTHLLRAIALELAGGNPDQAPYLSCRDVRS 83

Query: 97  AKSLDSILIDTRKPVLLEDIDLL-DFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGV 153
           A+SL       +  ++++D+ LL D  D +  L+ + N  H+   ++++     P     
Sbjct: 84  ARSLVDRFHGAQG-LVVDDLQLLPDSQDLRAALWQLFNDFHEAGRAVVLAGLHPPRMLPH 142

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SRL    V ++   DD     ++ K+  DRQ+ +   +  YI+    R +    
Sbjct: 143 LDDHLVSRLLWGLVARVDASDDLSRRMILKKIADDRQVRVPDDVVEYIMVTTSREVGELI 202

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
              + +   +L+    IT +LA    +E ++C
Sbjct: 203 GFFETIYRFSLAHKRRITLALA----REAREC 230


>gi|296328222|ref|ZP_06870753.1| ATP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154734|gb|EFG95520.1| ATP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 290

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            V+I+ G SG+GK+   NI  D S  T   N+   L+  L+DT    L   ID+  F +T
Sbjct: 5   HVIIVTGLSGAGKTTALNILEDMSYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63

Query: 125 Q-LFHIINSIHQ 135
           +  F  IN I +
Sbjct: 64  KDFFTFINYIKE 75


>gi|326563702|gb|EGE13953.1| DnaA family protein [Moraxella catarrhalis 46P47B1]
 gi|326564422|gb|EGE14650.1| DnaA family protein [Moraxella catarrhalis 12P80B1]
 gi|326577487|gb|EGE27367.1| DnaA family protein [Moraxella catarrhalis O35E]
          Length = 254

 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 21/138 (15%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKP---- 110
           ID       R + +VG SG GK+ LA+ I+   +  T  S +  SL+   +  + P    
Sbjct: 34  IDKLVQGSLRELFIVGDSGFGKTHLASAIYEHYTSMT--SKMVISLNLTELIEQDPHATA 91

Query: 111 -VLLEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
            V LE  DL+  +D Q           LFH+IN + ++   +L  A        + L DL
Sbjct: 92  LVGLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDL 151

Query: 159 CSRLKAATVVKISLPDDD 176
            +RL  A +  ++LPD+D
Sbjct: 152 HTRLSLAPM--LTLPDND 167


>gi|326561047|gb|EGE11412.1| DnaA family protein [Moraxella catarrhalis 7169]
 gi|326566731|gb|EGE16870.1| DnaA family protein [Moraxella catarrhalis 103P14B1]
 gi|326569353|gb|EGE19413.1| DnaA family protein [Moraxella catarrhalis BC8]
 gi|326571448|gb|EGE21463.1| DnaA family protein [Moraxella catarrhalis BC7]
 gi|326575269|gb|EGE25197.1| DnaA family protein [Moraxella catarrhalis CO72]
 gi|326576644|gb|EGE26551.1| DnaA family protein [Moraxella catarrhalis 101P30B1]
          Length = 254

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 21/138 (15%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKP---- 110
           ID       R + +VG SG GK+ LA+ I+   +  T  S +  SL+   +  + P    
Sbjct: 34  IDKLVQGSLRELFIVGDSGFGKTHLASAIYEHYTSMT--SKMVISLNLTELIEQDPHATA 91

Query: 111 -VLLEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
            V LE  DL+  +D Q           LFH+IN + ++   +L  A        + L DL
Sbjct: 92  LVGLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDL 151

Query: 159 CSRLKAATVVKISLPDDD 176
            +RL  A +  ++LPD+D
Sbjct: 152 HTRLSLAPM--LTLPDND 167


>gi|309781749|ref|ZP_07676482.1| lipid A export permease/ATP-binding protein MsbA [Ralstonia sp.
           5_7_47FAA]
 gi|308919390|gb|EFP65054.1| lipid A export permease/ATP-binding protein MsbA [Ralstonia sp.
           5_7_47FAA]
          Length = 589

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P  VV LVGPSGSGK+ L N+   + D +  T   +     D  L D R+ +     D++
Sbjct: 372 PGEVVALVGPSGSGKTTLVNLLPRFFDPTSGTISLDGDALADLALHDLRRQIAFVSQDVV 431

Query: 120 DFNDT 124
            FNDT
Sbjct: 432 LFNDT 436


>gi|268678645|ref|YP_003303076.1| chromosomal replication initiator protein DnaA [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616676|gb|ACZ11041.1| chromosomal replication initiator protein DnaA [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 441

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 21/211 (9%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSILIDT 107
           A + +   P      V + GP+G GK+ L     N    K +   ++ I + ++    + 
Sbjct: 126 AAKSVAEKPGVMYNPVFIYGPTGLGKTHLIHAIGNYAQSKGKIVIYATIEQFMNDFTYNL 185

Query: 108 RKPVL------LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVS 150
           R   +          D+L  +DTQ            FH  N +H     +++T+   P  
Sbjct: 186 RNQSMERFREKYRSCDVLLIDDTQFLSNKIQTQEEFFHTFNELHSAGKQIVLTSDKPPKM 245

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
                  L SR +   +  + LP+ +    +I K      I ++  +  YI   M  ++ 
Sbjct: 246 INGLEDRLKSRFEWGLIADVGLPELETKIAIIKKKCELDGINLNSDIVNYIASNMGDNIR 305

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             E  +  ++  AL     IT   A  V++E
Sbjct: 306 EIESAIINLNAYALLMRQDITLEFAKNVMRE 336


>gi|187929476|ref|YP_001899963.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
           [Ralstonia pickettii 12J]
 gi|187726366|gb|ACD27531.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
           [Ralstonia pickettii 12J]
          Length = 574

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P  VV LVGPSGSGK+ L N+   + D +  T   +     D  L D R+ +     D++
Sbjct: 357 PGEVVALVGPSGSGKTTLVNLLPRFFDPTSGTISLDGDALADLALHDLRRQIAFVSQDVV 416

Query: 120 DFNDT 124
            FNDT
Sbjct: 417 LFNDT 421


>gi|241663594|ref|YP_002981954.1| lipid ABC transporter ATPase/inner membrane protein [Ralstonia
           pickettii 12D]
 gi|240865621|gb|ACS63282.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
           [Ralstonia pickettii 12D]
          Length = 574

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P  VV LVGPSGSGK+ L N+   + D +  T   +     D  L D R+ +     D++
Sbjct: 357 PGEVVALVGPSGSGKTTLVNLLPRFFDPTSGTISLDGDALADLALHDLRRQIAFVSQDVV 416

Query: 120 DFNDT 124
            FNDT
Sbjct: 417 LFNDT 421


>gi|84497497|ref|ZP_00996319.1| ABC transporter ATP-binding protein [Janibacter sp. HTCC2649]
 gi|84382385|gb|EAP98267.1| ABC transporter ATP-binding protein [Janibacter sp. HTCC2649]
          Length = 243

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 45 VHSAIEQAVRLID--SWPSWPSRVVILVGPSGSGKSCLANIWS--DKSRSTRF 93
          +H   + AVR +D  S    P  +V ++GPSGSGKS L N+    DK+ S R 
Sbjct: 14 IHGTGDTAVRALDGVSLEVMPGELVAVMGPSGSGKSTLLNLAGGLDKATSGRV 66


>gi|255324008|ref|ZP_05365133.1| chromosomal replication initiator protein DnaA [Corynebacterium
           tuberculostearicum SK141]
 gi|255298865|gb|EET78157.1| chromosomal replication initiator protein DnaA [Corynebacterium
           tuberculostearicum SK141]
          Length = 545

 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145
           R   F    ++LD +++D        DI  L+  ++   + FH  N++HQ +  +++++ 
Sbjct: 291 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 342

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L +R +   +  I  PD +    +++K  A+    +D+ +   I  R 
Sbjct: 343 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAANDGTEVDRSVLELIASRF 402

Query: 206 ERSL 209
           E S+
Sbjct: 403 ESSI 406


>gi|296112801|ref|YP_003626739.1| DnaA family protein [Moraxella catarrhalis RH4]
 gi|295920495|gb|ADG60846.1| DnaA family protein [Moraxella catarrhalis RH4]
          Length = 254

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 21/138 (15%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKP---- 110
           ID       R + +VG SG GK+ LA+ I+   +  T  S +  SL+   +  + P    
Sbjct: 34  IDKLVQGSLRELFIVGDSGFGKTHLASAIYEHYTSMT--SKMVISLNLTELIEQDPHATA 91

Query: 111 -VLLEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
            V LE  DL+  +D Q           LFH+IN + ++   +L  A        + L DL
Sbjct: 92  LVGLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDL 151

Query: 159 CSRLKAATVVKISLPDDD 176
            +RL  A +  ++LPD+D
Sbjct: 152 HTRLSLAPM--LTLPDND 167


>gi|190150693|ref|YP_001969218.1| hypothetical protein APP7_1424 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189915824|gb|ACE62076.1| hypothetical protein APP7_1424 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 246

 Score = 38.9 bits (89), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 89/189 (47%), Gaps = 20/189 (10%)

Query: 71  GPSGSGKSCL----ANIWSDKSRSTRFSNIAKS--LDSILIDTRKP---VLLEDIDLLDF 121
           G   SGKS L    +N +    +++ +  + KS     +++D  +    + L+DI ++  
Sbjct: 56  GGKSSGKSHLLKAVSNHYLLNQQTSSYIPLEKSQYFSPMVLDNAEQLDVICLDDIQIVAG 115

Query: 122 NDT---QLFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           N+     +F++ N I +        + + LL++A   P    + LPDL SRL    V ++
Sbjct: 116 NEEWELAIFNLFNLIREQQSLFGNGHKTLLLISADCPPHQLQINLPDLRSRLTWGEVYQL 175

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   DD    ++ +    + + +  ++A ++++R++R L      +D++D  +L     +
Sbjct: 176 NDLSDDQKRIILQRNAYQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKL 235

Query: 231 TRSLAAEVL 239
           T     E+L
Sbjct: 236 TVPFVKEIL 244


>gi|255534685|ref|YP_003095056.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340881|gb|ACU06994.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae
           bacterium 3519-10]
          Length = 488

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 19/186 (10%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKS-RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           S+P +VV+ +    S K     + + K+ + T F+N  + +D ++ID        DI  L
Sbjct: 213 SYPDKVVLYLS---SEKFIQQFVSAAKAHKQTEFANFYQMVDVLIID--------DIQFL 261

Query: 120 DFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
               +     FHI + +HQ    +++T+   PV        + SR K     +I  PD D
Sbjct: 262 SGKKSTQDSFFHIFDYLHQNGKQIILTSDKAPVDILDIQDRIVSRFKWGLSAEIKSPDFD 321

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
              K+IV   +   I + + +  ++   ++ ++    +L+  + N  ++        L+ 
Sbjct: 322 TRRKIIVDKLSRDGIVLTEDMLDFLASEVKTNV---RELIGVI-NSVIAYSTVYKSELSL 377

Query: 237 EVLKET 242
           E+LKET
Sbjct: 378 ELLKET 383


>gi|145640667|ref|ZP_01796250.1| chromosomal replication initiation protein [Haemophilus influenzae
           R3021]
 gi|145274593|gb|EDK14456.1| chromosomal replication initiation protein [Haemophilus influenzae
           22.4-21]
          Length = 454

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI NS+ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|150387854|ref|YP_001317903.1| chromosomal replication initiation protein [Alkaliphilus
           metalliredigens QYMF]
 gi|167016895|sp|A6TJ76|DNAA_ALKMQ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|149947716|gb|ABR46244.1| chromosomal replication initiator protein DnaA [Alkaliphilus
           metalliredigens QYMF]
          Length = 448

 Score = 38.9 bits (89), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 31/156 (19%), Positives = 71/156 (45%), Gaps = 11/156 (7%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145
           R+  F N  +++D +L+D        DI  +   +    + FH  N++H+ +  +++++ 
Sbjct: 198 RNVEFRNRYRNVDVLLVD--------DIQFIAGKERTQEEFFHTFNALHESNKQIIISSD 249

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L SR +   +  I  PD +    ++ K      I++  ++ A+I +++
Sbjct: 250 RPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKAQMENIYVPDEVTAHIAKKI 309

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + ++   E  + ++   +      +T  LA+E LKE
Sbjct: 310 QSNIRELEGALIRIVAYSSLTNSEVTVELASEALKE 345


>gi|326567507|gb|EGE17622.1| DnaA family protein [Moraxella catarrhalis BC1]
          Length = 254

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 21/138 (15%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKP---- 110
           ID       R + +VG SG GK+ LA+ I+   +  T  S +  SL+   +  + P    
Sbjct: 34  IDKLVQGSLRELFIVGDSGFGKTHLASAIYEHYTSMT--SKMVISLNLTELIEQDPHATA 91

Query: 111 -VLLEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
            V LE  DL+  +D Q           LFH+IN + ++   +L  A        + L DL
Sbjct: 92  LVGLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDL 151

Query: 159 CSRLKAATVVKISLPDDD 176
            +RL  A +  ++LPD+D
Sbjct: 152 HTRLSLAPM--LTLPDND 167


>gi|148828164|ref|YP_001292917.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittGG]
 gi|148719406|gb|ABR00534.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittGG]
          Length = 454

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI NS+ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|145634169|ref|ZP_01789880.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittAA]
 gi|148826359|ref|YP_001291112.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittEE]
 gi|145268613|gb|EDK08606.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittAA]
 gi|148716519|gb|ABQ98729.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittEE]
          Length = 454

 Score = 38.9 bits (89), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI NS+ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|313817643|gb|EFS55357.1| replication initiator protein DnaA [Propionibacterium acnes
           HL046PA2]
 gi|314961663|gb|EFT05764.1| replication initiator protein DnaA [Propionibacterium acnes
           HL002PA2]
 gi|315081497|gb|EFT53473.1| replication initiator protein DnaA [Propionibacterium acnes
           HL078PA1]
 gi|315083080|gb|EFT55056.1| replication initiator protein DnaA [Propionibacterium acnes
           HL027PA2]
 gi|315086613|gb|EFT58589.1| replication initiator protein DnaA [Propionibacterium acnes
           HL002PA3]
          Length = 428

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+T F    + +D +L+D        DI  L        + FH  N++H     ++MT+
Sbjct: 176 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 227

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 228 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 287

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      +  SLA  VLK+
Sbjct: 288 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 324


>gi|297171395|gb|ADI22398.1| ATPase involved in DNA replication initiation [uncultured
           Planctomycetales bacterium HF0500_02G17]
          Length = 444

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 26/190 (13%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRF 93
           +   + L H A  +    ID     P   + L GPSG GK+ L    A    +++   R 
Sbjct: 82  VGESNRLAHRAALRIAEGIDDAAFSP---LFLHGPSGVGKTHLLEGIARRTQERNPGARV 138

Query: 94  SNIA--------------KSLDSILIDTRKPVLL--EDIDLL---DFNDTQLFHIINSIH 134
             +               + +DS     R   LL  +D+  L       T+L H ++++ 
Sbjct: 139 RYVTAEAFTNEFINAIQNRGMDSFRKTWRGVTLLCIDDVHFLRGKQSTQTELLHTLDAVG 198

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
              + +++ +   P         L SR     VV+I  PDD    +++V + A R +   
Sbjct: 199 LRQARIVLASDEPPRKIAELSDQLVSRFMGGAVVRIDEPDDALCRQLLVALAARRGLVFT 258

Query: 195 KKLAAYIVQR 204
           +   + +VQR
Sbjct: 259 EDGISMLVQR 268


>gi|152981564|ref|YP_001354562.1| hypothetical protein mma_2872 [Janthinobacterium sp. Marseille]
 gi|151281641|gb|ABR90051.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 223

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 4/178 (2%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V L G +G+GK+ L    ++   + R+ +     D  L D+   + L D       D 
Sbjct: 45  RFVYLWGEAGAGKTHLLRAMAETPHA-RYLDSDAGTDDFLYDSATTLYLLDDSHKLTPDA 103

Query: 125 QL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
           Q+  F + N + +    LL      P S  V   DL +R     + ++    DD     +
Sbjct: 104 QIAAFALFNQVREQGGCLLAAGNAAPASLTVR-EDLRTRFGWGLIYQVHGLSDDEKIAAL 162

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                 R + +   +  Y++    R +     ++D +D  +L     IT  L  E+L+
Sbjct: 163 THAAGARGLTLSPGVLPYLITHFARDMRSLSAMLDALDQYSLETKRPITLPLLRELLQ 220


>gi|260581928|ref|ZP_05849724.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae NT127]
 gi|260095121|gb|EEW79013.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae NT127]
          Length = 454

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI NS+ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|262373132|ref|ZP_06066411.1| DnaA regulatory inactivator Hda [Acinetobacter junii SH205]
 gi|262313157|gb|EEY94242.1| DnaA regulatory inactivator Hda [Acinetobacter junii SH205]
          Length = 232

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 32/177 (18%)

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT----- 124
           G +G+GKS L +   D         I  SL  +L    + +  LE  DL+  +D      
Sbjct: 46  GGAGTGKSHLLSAICDSYLELNRPAIKVSLLELLDAPIEAITSLEFYDLVALDDVDAICG 105

Query: 125 ------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
                  +FH++N+   ++  L+ ++R  P+   + LPDL SRL  A  VK+  P+    
Sbjct: 106 VPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PNG--- 157

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
                  F DRQ  +       ++ R  R + F +++VD + N    +   + ++LA
Sbjct: 158 -----SSFIDRQALLQS-----VMNR--RGIHFDQQIVDYLLNNGPHQASVLLQTLA 202


>gi|145630089|ref|ZP_01785871.1| chromosomal replication initiation protein [Haemophilus influenzae
           R3021]
 gi|144984370|gb|EDJ91793.1| chromosomal replication initiation protein [Haemophilus influenzae
           R3021]
          Length = 439

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI NS+ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|291455692|ref|ZP_06595082.1| putative replication initiator protein [Bifidobacterium breve DSM
           20213]
 gi|291382620|gb|EFE90138.1| putative replication initiator protein [Bifidobacterium breve DSM
           20213]
          Length = 488

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 11/166 (6%)

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135
            L N    + +   F+   + +D +LID        DI  L   +    Q FH  NS+HQ
Sbjct: 227 ALQNTNQSQGQIAEFNRRYRQVDVLLID--------DIQFLGGKEATLDQFFHTFNSLHQ 278

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
            +  +++ +   P +       L SR ++   V +  PD +    ++  + A     I  
Sbjct: 279 ANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIAAMNGSKIPN 338

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +   I +R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 339 DVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 384


>gi|291612473|ref|YP_003522630.1| chromosomal replication initiator protein DnaA [Sideroxydans
           lithotrophicus ES-1]
 gi|291582585|gb|ADE10243.1| chromosomal replication initiator protein DnaA [Sideroxydans
           lithotrophicus ES-1]
          Length = 447

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 29/227 (12%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRF- 93
            + + L H+A  Q    +   P      + + G  G GK+ L     N+ S K+   R  
Sbjct: 124 GKANQLAHAAAIQ----VAETPGVAYNPLFIYGGVGLGKTHLLQAIGNLVSKKNPQARIC 179

Query: 94  --------SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-----------FHIINSIH 134
                   S + ++  +   D  K      +DLL  +D Q            F+ +NS+ 
Sbjct: 180 YIHATNYISGVVRAFQTKNFDEFKQ-FYNSLDLLLIDDIQFIADKPGTQQEFFYTLNSLI 238

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
             +  +++T  TFP       P L SR      V I  P  +    ++++  A     I 
Sbjct: 239 DTNKQVVITCDTFPKEITGIEPRLTSRFTCGLTVAIEPPGLEMRVAILLQKSATNGSPIS 298

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +A +I + +  ++   E  +++++  A      I+  LA E LK+
Sbjct: 299 EDVAFFIAKHVRSNIRELEGALNRIEAYARFHKRIISIELAKEALKD 345


>gi|224372071|ref|YP_002606443.1| chromosomal replication initiator protein DnaA [Nautilia
           profundicola AmH]
 gi|254777909|sp|B9L735|DNAA_NAUPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|223588880|gb|ACM92616.1| chromosomal replication initiator protein DnaA [Nautilia
           profundicola AmH]
          Length = 436

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 16/156 (10%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           RF    ++ D +LID        D+      +    + FH  N ++     + +TA   P
Sbjct: 185 RFHEKYRNCDVLLID--------DVQFFAGKERTQEEFFHTFNELYNQKKQICLTADRPP 236

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                 +  L SR +A  +V I  P+ +   ++I K      I++ +++  YI  +++ +
Sbjct: 237 KKLYDLVDRLRSRFEAGLIVDIQPPELETKIEIIRKKCELNGIYLPEEIIEYIATKLDSN 296

Query: 209 LVFAEKLVDKMDNLALSRGMG---ITRSLAAEVLKE 241
           +   E ++ K++  A+S+ +G   IT   A + LKE
Sbjct: 297 IREIEGMITKIN--AMSKILGISEITLDFAKQALKE 330


>gi|229846051|ref|ZP_04466163.1| chromosomal replication initiation protein [Haemophilus influenzae
           7P49H1]
 gi|229811055|gb|EEP46772.1| chromosomal replication initiation protein [Haemophilus influenzae
           7P49H1]
          Length = 454

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI NS+ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|171463880|ref|YP_001797993.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193418|gb|ACB44379.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 587

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 63  PSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           P  VV  VGPSG GKS L N+    +   +      NI    + +L D R+ +     D+
Sbjct: 370 PGEVVAFVGPSGGGKSTLVNLLPRFYKPSTGHIFLDNIPLE-EIVLADVRRQIAFVSQDV 428

Query: 119 LDFNDT 124
           + FNDT
Sbjct: 429 ILFNDT 434


>gi|145632379|ref|ZP_01788114.1| chromosomal replication initiation protein [Haemophilus influenzae
           3655]
 gi|144987286|gb|EDJ93816.1| chromosomal replication initiation protein [Haemophilus influenzae
           3655]
          Length = 454

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI NS+ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|16272931|ref|NP_439156.1| chromosomal replication initiation protein [Haemophilus influenzae
           Rd KW20]
 gi|260580084|ref|ZP_05847914.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae RdAW]
 gi|319897495|ref|YP_004135692.1| chromosomal replication initiator protein dnaa, DNA-binding
           transcriptional dual regulator [Haemophilus influenzae
           F3031]
 gi|1169364|sp|P43742|DNAA_HAEIN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|1574023|gb|AAC22655.1| chromosomal replication initiator protein (dnaA) [Haemophilus
           influenzae Rd KW20]
 gi|260093368|gb|EEW77301.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae RdAW]
 gi|317433001|emb|CBY81372.1| chromosomal replication initiator protein DnaA,DNA-binding
           transcriptional dual regulator [Haemophilus influenzae
           F3031]
          Length = 454

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI NS+ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|290954759|ref|YP_003485941.1| ABC transporter ATP-binding protein [Streptomyces scabiei 87.22]
 gi|260644285|emb|CBG67368.1| putative ABC transporter ATP-binding subunit [Streptomyces scabiei
           87.22]
          Length = 597

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 17/108 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P  V  LVGPSGSGKS LA +        RF +           TR  V L  +DL D  
Sbjct: 367 PGTVTALVGPSGSGKSTLAQLLP------RFFD----------PTRGSVSLGGVDLRDIG 410

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
              L+ +++ + Q D  LL T+    ++  V   D    ++AA + +I
Sbjct: 411 SRDLYRLVSFVLQ-DVRLLRTSVAENIALAVPHADRDDIVRAAGLARI 457


>gi|229816997|ref|ZP_04447279.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM
           20098]
 gi|229785742|gb|EEP21856.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM
           20098]
          Length = 516

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 11/158 (6%)

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMT 143
           + R   F+   +S+D +LID        DI  L   +    Q FH  N++HQ +  +++ 
Sbjct: 263 QGRIAEFNRRYRSVDVLLID--------DIQFLGGKEATLEQFFHTFNALHQANKRIVIA 314

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +   P +       L SR  +   V +  PD +    ++  M +     I   +   I +
Sbjct: 315 SDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASMNHSNIPNDVLDLIAE 374

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           R   ++   E  + ++  +A      +TR++A + L++
Sbjct: 375 RFTENIRELEGALTRVTAVASLSNQPVTRAMAEQTLQD 412


>gi|145637299|ref|ZP_01792960.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittHH]
 gi|145269551|gb|EDK09493.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittHH]
          Length = 454

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI NS+ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|301169967|emb|CBW29571.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus
           influenzae 10810]
          Length = 231

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             KV+      R   +  + A +++ R+ R +    + +D +D  +L     +T     +
Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKK 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|124004296|ref|ZP_01689142.1| transposase B of [Microscilla marina ATCC 23134]
 gi|123990366|gb|EAY29865.1| transposase B of [Microscilla marina ATCC 23134]
          Length = 247

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLA----------------NIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           VIL+GPSG+GK+ +A                    D +R  + S++ K+  +      K 
Sbjct: 103 VILMGPSGTGKTFIAAGLAYLALKAGYKAIFRTMEDLARILKLSDMTKNNRAQYNACVKA 162

Query: 111 VLLEDIDLLDFN-----DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            LL   DL+ F         LFH+I+++H+  SS+++T    P  W   L D
Sbjct: 163 ELLVIDDLMMFPIEKKVGQMLFHLIDTLHE-KSSVIITTNKSPKEWAEALDD 213


>gi|149917947|ref|ZP_01906441.1| ABC transporter related protein [Plesiocystis pacifica SIR-1]
 gi|149821213|gb|EDM80617.1| ABC transporter related protein [Plesiocystis pacifica SIR-1]
          Length = 241

 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKS----CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           I +W   P  VV +VGP+G+GK+    CLA +      + R      + + + + +R   
Sbjct: 23  IPAWTVAPGSVVGVVGPNGAGKTTLIDCLAGLIRPTEGTVRVVGRDPAAEPMFVRSRAGF 82

Query: 112 LLEDIDLLDFNDTQLFHIINSIH-QYDSSLL 141
           + +D  L D +  +L  +++  +  +D +L+
Sbjct: 83  MSDDRPLFDLSVARLLRMLSGYYASWDEALV 113


>gi|242021491|ref|XP_002431178.1| proteasome-activating nucleotidase, putative [Pediculus humanus
           corporis]
 gi|212516427|gb|EEB18440.1| proteasome-activating nucleotidase, putative [Pediculus humanus
           corporis]
          Length = 581

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 10/79 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWSD 86
           G+  DD+    A +QA++ +   PS           PSR ++L GP G+GK+ LA   + 
Sbjct: 303 GVKWDDIAGQHAAKQALQEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTLLARAVAS 362

Query: 87  KSRSTRFSNIAKSLDSILI 105
           +  +T FS  A SL S  +
Sbjct: 363 ECNATFFSISAASLTSKYV 381


>gi|16273145|ref|NP_439382.1| DNA replication initiation factor [Haemophilus influenzae Rd KW20]
 gi|260581145|ref|ZP_05848965.1| DnaA regulatory inactivator Hda [Haemophilus influenzae RdAW]
 gi|6136705|sp|O86235|Y122B_HAEIN RecName: Full=Uncharacterized protein HI_1225.1
 gi|3212215|gb|AAC22879.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092173|gb|EEW76116.1| DnaA regulatory inactivator Hda [Haemophilus influenzae RdAW]
 gi|309972964|gb|ADO96165.1| DNA replication initiation factor Had [Haemophilus influenzae
           R2846]
          Length = 231

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 71  GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS     ++L  ++ ++ V L+D+  +  
Sbjct: 48  GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             KV+      R   +  + A +++ R+ R +    + +D +D  +L     +T     +
Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKK 227

Query: 238 VL 239
           +L
Sbjct: 228 IL 229


>gi|300114434|ref|YP_003761009.1| DnaA regulatory inactivator Hda [Nitrosococcus watsonii C-113]
 gi|299540371|gb|ADJ28688.1| DnaA regulatory inactivator Hda [Nitrosococcus watsonii C-113]
          Length = 232

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 12/187 (6%)

Query: 65  RVVILVGPSGSGKS--CLANIWSDKSRSTRFSNIAKSLDSIL-------IDTRKPVLLED 115
           R + L GPSG GK+   LA        S R + +      I+       ++    V ++D
Sbjct: 44  RFLCLWGPSGVGKTHLLLAACQIAAQESERVAYVPLKRVGIMAPEILGGLEAAAFVAIDD 103

Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ID +      +  L H+ N + +    LL+ +   P +    LPDL SRL      ++  
Sbjct: 104 IDHVAGYRHWEESLLHLYNLLQEEQGRLLLASTDKPSTLHWLLPDLRSRLGWGVGYQLQP 163

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            DD      +    A R + +  ++A ++++  ER +     ++ +++  +++    +T 
Sbjct: 164 LDDHQKHAALQFQAAKRGLELPDEVAGFLLRHSERDMHSLSSILAQLERASMAAQRRLTV 223

Query: 233 SLAAEVL 239
               +VL
Sbjct: 224 PFVRQVL 230


>gi|309973507|gb|ADO96708.1| Chromosomal replication initiator protein [Haemophilus influenzae
           R2846]
          Length = 454

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI NS+ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|301154703|emb|CBW14166.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Haemophilus
           parainfluenzae T3T1]
          Length = 455

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI N++ +    +++T+  +P
Sbjct: 210 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 261

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 262 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHHMELPEEVAFFIAQRLRTN 321

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 322 VRELEGALNRVKAMQDFKGGHIDIDFVRDTLKD 354


>gi|58579624|ref|YP_198640.1| chromosomal replication initiation protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|71151811|sp|Q5H715|DNAA_XANOR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|58424218|gb|AAW73255.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 443

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R  +             FS + ++L    +D  K    
Sbjct: 144 LLLYGSTGLGKTHLMFAAGNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 203

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 204 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 263

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 264 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 323

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 324 NFTGRSITVEFAQETLRD 341


>gi|159040888|ref|YP_001540140.1| ABC transporter related [Caldivirga maquilingensis IC-167]
 gi|157919723|gb|ABW01150.1| ABC transporter related [Caldivirga maquilingensis IC-167]
          Length = 289

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 20/67 (29%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           +   VVI++GPSGSGKS L NI    DK  S R                  V L+D+D+ 
Sbjct: 36  YRGEVVIIMGPSGSGKSTLLNIMGMLDKPTSGR------------------VYLDDVDVT 77

Query: 120 DFNDTQL 126
           D ++ +L
Sbjct: 78  DMSENEL 84


>gi|77164694|ref|YP_343219.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           oceani ATCC 19707]
 gi|254434656|ref|ZP_05048164.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           oceani AFC27]
 gi|76883008|gb|ABA57689.1| regulatory inactivation of DnaA Hda protein [Nitrosococcus oceani
           ATCC 19707]
 gi|207090989|gb|EDZ68260.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           oceani AFC27]
          Length = 232

 Score = 38.5 bits (88), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 65  RVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSL---DSIL--IDTRKPVLLED 115
           R + L GPSG GK+ L      I + K     +  + +++     IL  ++    V ++D
Sbjct: 44  RFLCLRGPSGVGKTHLLLAACQIAAQKGERVAYVPLKRAVIMAPEILGGLEVAAFVAIDD 103

Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ID +      +  L H+ N + +    LL+ +   P +    LPDL SRL      ++  
Sbjct: 104 IDHIAGYRHWEESLLHLYNLLQEGRGRLLLASTDKPSTLHWLLPDLRSRLGWGLGYQLQP 163

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            DD      +    A R + +  ++A ++++  ER +     ++ +++  +++    +T 
Sbjct: 164 LDDHQKHAALQFQAAKRGLELPDEVAGFLLRHSERDMHSLSSILAQLERASMAAQRRLTV 223

Query: 233 SLAAEVL 239
               +VL
Sbjct: 224 PFVRQVL 230


>gi|85857846|ref|YP_460048.1| chromosomal replication initiator protein [Syntrophus
           aciditrophicus SB]
 gi|85720937|gb|ABC75880.1| chromosomal replication initiator protein [Syntrophus
           aciditrophicus SB]
          Length = 457

 Score = 38.5 bits (88), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 111 VLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA--- 164
           +L++DI  +   +    + FH  N++H     +++T+  FP      +P+L  RL++   
Sbjct: 219 LLMDDIQFIAGKERTQEEFFHTFNTLHDSGKQIVVTSDKFPKD----IPNLEGRLRSRFE 274

Query: 165 -ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              +  I  P+ +    ++ K   +  I I   +A YI    E ++   E  + ++   +
Sbjct: 275 WGLIADIQPPEIETKIAILEKKAQENNIHIPTNVAYYISSHAESNIRELEGFLVRIAAYS 334

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  I   L  EVLK+
Sbjct: 335 SVTGRNIDLDLVKEVLKD 352


>gi|84621658|ref|YP_449030.1| chromosomal replication initiation protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188574271|ref|YP_001911200.1| chromosomal replication initiation protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|123725613|sp|Q2P9M1|DNAA_XANOM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735864|sp|B2SUW3|DNAA_XANOP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|84365598|dbj|BAE66756.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188518723|gb|ACD56668.1| chromosomal replication initiator protein DnaA [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 442

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R  +             FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRSITVEFAQETLRD 340


>gi|308048975|ref|YP_003912541.1| regulatory inactivation of DnaA Hda protein [Ferrimonas balearica
           DSM 9799]
 gi|307631165|gb|ADN75467.1| regulatory inactivation of DnaA Hda protein [Ferrimonas balearica
           DSM 9799]
          Length = 235

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 27/195 (13%)

Query: 66  VVILVGPSGSGKSCLAN----IWSDKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDLL 119
           V  L G   SG++ L +      S+  RST +    I  S+   ++D      LED+ L+
Sbjct: 47  VTYLWGSGKSGRTHLLHATCVYASELGRSTFYLPLGIHASMSPAILDG-----LEDLSLV 101

Query: 120 DFND-----------TQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             +D             LF++ N + +  +  L+++AR      G  LPDL SRL     
Sbjct: 102 CLDDIDEVCRHPIWEEALFNLYNRVREKGTCRLVVSARAPANQAGFLLPDLVSRLNWGIH 161

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            ++    DD     + +    R + +++++  +++ R+ R L    +++D++D  +    
Sbjct: 162 YQLHPLSDDAKLAALQRRAKMRGLDLEEEVGRFLMTRLARDLRTLFEVLDRLDKAS---- 217

Query: 228 MGITRSLAAEVLKET 242
           M   R L    +KET
Sbjct: 218 MVAQRRLTIPFVKET 232


>gi|332830222|gb|EGK02850.1| chromosomal replication initiator protein DnaA [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 467

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 84  WSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           ++D  R   +  F N  + +D ++ID      + ++  ++     LFHI N +HQ +  L
Sbjct: 209 YADAGRYNTTNDFINFYQGIDVLIIDD-----IHELAGIERTQNTLFHIFNHLHQNNKQL 263

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           ++T+   P         L +R +     KI  PD     K++        + I + +  Y
Sbjct: 264 ILTSDKSPSELQGVEERLLTRFRWGLTTKIDHPDKGLRLKILQNKILHDGLSIPEDVVDY 323

Query: 201 IVQRM 205
           I + +
Sbjct: 324 IAENV 328


>gi|19704424|ref|NP_603986.1| hypothetical protein FN1089 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|30173455|sp|Q8REL1|Y1089_FUSNN RecName: Full=UPF0042 nucleotide-binding protein FN1089
 gi|19714684|gb|AAL95285.1| ATP-binding protein (contains P-loop) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 290

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            ++I+ G SG+GK+   NI  D S  T   N+   L+  L+DT    L   ID+  F +T
Sbjct: 5   HIIIVTGLSGAGKTTALNILEDMSYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63

Query: 125 Q-LFHIINSIHQ 135
           +  F  IN I +
Sbjct: 64  KDFFTFINYIKE 75


>gi|313886600|ref|ZP_07820313.1| chromosomal replication initiator protein DnaA [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923956|gb|EFR34752.1| chromosomal replication initiator protein DnaA [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 475

 Score = 38.5 bits (88), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 36/202 (17%), Positives = 82/202 (40%), Gaps = 33/202 (16%)

Query: 69  LVGPSGSGKSCLAN---------------------------IWSDKSRSTR-FSNIAKSL 100
           + GPSG GK+ L +                           + + ++ +T  F N  + +
Sbjct: 179 IYGPSGVGKTHLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQV 238

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           D +LID  + ++ +    L F     F + N ++     +++T+ T PV+       L S
Sbjct: 239 DVLLIDDIQGLIAKKKTQLTF-----FQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLIS 293

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R+  +  +++  PD D   + +     +    + +++  YI + +  S+   + +   + 
Sbjct: 294 RIAGSLTIEVERPDYDLRREYLRHKSEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLI 353

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             A   G  +T S   +++ +T
Sbjct: 354 TRAAVEGCDVTSSFVKKIVSQT 375


>gi|321464991|gb|EFX75995.1| hypothetical protein DAPPUDRAFT_322816 [Daphnia pulex]
          Length = 617

 Score = 38.5 bits (88), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R ++L GP G+GK+ +    + KSRST FS  A SL S
Sbjct: 375 PPRGILLFGPPGTGKTLIGKCIASKSRSTFFSISASSLTS 414


>gi|13542147|ref|NP_111835.1| 3-dehydroquinate synthase [Thermoplasma volcanium GSS1]
 gi|22256709|sp|Q978S6|AROB_THEVO RecName: Full=3-dehydroquinate synthase
 gi|14325578|dbj|BAB60481.1| 3-dehydroquinate synthase [Thermoplasma volcanium GSS1]
          Length = 360

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 105 IDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           +DT++ V+  + D + F   D  + H+     +YDS ++M ++T    +   +PD+ S  
Sbjct: 1   MDTQRFVITMNGDNISFIVGDNAINHLSEEAGKYDSIVIMISKTVEEMYANHIPDVGSF- 59

Query: 163 KAATVVKISLPDDDFLEKV-----IVKMFADRQI 191
              +VVKISL D + L+ +     IVK+  +R++
Sbjct: 60  -GNSVVKISLNDGESLKSLRNYQKIVKVLLERKV 92


>gi|332299202|ref|YP_004441123.1| Chromosomal replication initiator protein dnaA [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176265|gb|AEE11955.1| Chromosomal replication initiator protein dnaA [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 475

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 36/202 (17%), Positives = 82/202 (40%), Gaps = 33/202 (16%)

Query: 69  LVGPSGSGKSCLAN---------------------------IWSDKSRSTR-FSNIAKSL 100
           + GPSG GK+ L +                           + + ++ +T  F N  + +
Sbjct: 179 IYGPSGVGKTHLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQV 238

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           D +LID  + ++ +    L F     F + N ++     +++T+ T PV+       L S
Sbjct: 239 DVLLIDDIQGLIAKKKTQLTF-----FQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLIS 293

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R+  +  +++  PD D   + +     +    + +++  YI + +  S+   + +   + 
Sbjct: 294 RIAGSLTIEVERPDYDLRREYLRHKSEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLI 353

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             A   G  +T S   +++ +T
Sbjct: 354 TRAAVEGCDVTSSFVKKIVSQT 375


>gi|156331070|ref|XP_001619132.1| hypothetical protein NEMVEDRAFT_v1g224466 [Nematostella vectensis]
 gi|156201713|gb|EDO27032.1| predicted protein [Nematostella vectensis]
          Length = 196

 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 27/87 (31%)

Query: 64  SRVVILVGPSGSGKSCLANIW---------------------SDKSRSTRFSNIAKSLDS 102
           SR ++++G +GSGKSCL + W                     +D   + R+ NIA +L  
Sbjct: 82  SRPIVVLGNAGSGKSCLLSNWITAHQLRHPTDRALYGEDAIQTDAGAAERYVNIANTLAC 141

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHI 129
           + +DT      E  D  D    ++ HI
Sbjct: 142 LYVDT------EQFDKADTMHREVLHI 162


>gi|331005288|ref|ZP_08328678.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC1989]
 gi|330420898|gb|EGG95174.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC1989]
          Length = 226

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 11/138 (7%)

Query: 113 LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
           L+ ID++  +D Q           +FH+ N +      L++ ++  P   G+ L DL SR
Sbjct: 89  LDTIDVVILDDVQCICGVTEWELAVFHLYNRLRDGQKQLVIGSQIAPRELGISLADLHSR 148

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           L+      +    D+   KV++    +  + I   +  +I     R L     L+ K+D+
Sbjct: 149 LQWGMSYSLEALSDEDKRKVLILRSQNLGLRISDDVIQFIFNHYSRDLRQLMTLLHKIDS 208

Query: 222 LALSRGMGITRSLAAEVL 239
            +LS    IT     +VL
Sbjct: 209 ASLSEQRHITIPFVKQVL 226


>gi|76808798|ref|YP_332767.1| lipid A export ATP-binding/permease MsbA [Burkholderia pseudomallei
           1710b]
 gi|126440231|ref|YP_001058247.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 668]
 gi|126451380|ref|YP_001079903.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           NCTC 10247]
 gi|254202192|ref|ZP_04908555.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           FMH]
 gi|76578251|gb|ABA47726.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 1710b]
 gi|126219724|gb|ABN83230.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 668]
 gi|126244250|gb|ABO07343.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           NCTC 10247]
 gi|147746439|gb|EDK53516.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           FMH]
          Length = 575

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           S+   P  +V L GPSGSGK+ L N+    +   S S R   +A    S L D R  + +
Sbjct: 355 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYS-LRDLRNQIAM 413

Query: 114 EDIDLLDFNDT 124
              D++ FNDT
Sbjct: 414 VSQDVVLFNDT 424


>gi|53725482|ref|YP_103507.1| ABC transporter permease/ATP-binding protein [Burkholderia mallei
           ATCC 23344]
 gi|126454551|ref|YP_001065486.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 1106a]
 gi|167718739|ref|ZP_02401975.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei DM98]
 gi|167737757|ref|ZP_02410531.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 14]
 gi|167814914|ref|ZP_02446594.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 91]
 gi|167823356|ref|ZP_02454827.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 9]
 gi|167893448|ref|ZP_02480850.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 7894]
 gi|167910138|ref|ZP_02497229.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 112]
 gi|167918168|ref|ZP_02505259.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei BCC215]
 gi|52428905|gb|AAU49498.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           ATCC 23344]
 gi|126228193|gb|ABN91733.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 1106a]
          Length = 574

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           S+   P  +V L GPSGSGK+ L N+    +   S S R   +A    S L D R  + +
Sbjct: 354 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYS-LRDLRNQIAM 412

Query: 114 EDIDLLDFNDT 124
              D++ FNDT
Sbjct: 413 VSQDVVLFNDT 423


>gi|299533943|ref|ZP_07047304.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni
           S44]
 gi|298718070|gb|EFI59066.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni
           S44]
          Length = 232

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 8/180 (4%)

Query: 69  LVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FND 123
           L G +GSGKS L     +  R       + + +        +    VL++D+D+   F  
Sbjct: 51  LWGEAGSGKSHLLKAVREALREQGAMVGWMDASTPFPPEFDERWAAVLMDDVDIYTPFQQ 110

Query: 124 TQLFHIINSIHQYDSSL---LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
            + F+   +     + L   ++ A   PV+      DL +RL    V ++ L D+     
Sbjct: 111 ARAFNWFVNATSPATGLPRWVLAAGQLPVADLKMREDLRTRLGWGHVYQLHLLDESARRA 170

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           V+ +    R +F+  ++  Y+++R  R L    +L+D +D  AL     IT  L   +L+
Sbjct: 171 VLRQEADARGVFLSDEVMDYMLRRFSRDLGSLMQLLDMLDGFALRNKRAITIPLLKTMLE 230


>gi|167901902|ref|ZP_02489107.1| ABC transporter, permease/ATP-binding protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 570

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           S+   P  +V L GPSGSGK+ L N+    +   S S R   +A    S L D R  + +
Sbjct: 350 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYS-LRDLRNQIAM 408

Query: 114 EDIDLLDFNDT 124
              D++ FNDT
Sbjct: 409 VSQDVVLFNDT 419


>gi|325577775|ref|ZP_08148050.1| ribosomal subunit interface protein [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160520|gb|EGC72646.1| ribosomal subunit interface protein [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 455

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI N++ +    +++T+  +P
Sbjct: 210 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 261

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 262 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHHMELPEEVAFFIAQRLRTN 321

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 322 VRELEGALNRVKAMQDFKGGHIDIDFVRDTLKD 354


>gi|167844906|ref|ZP_02470414.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei B7210]
          Length = 574

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           S+   P  +V L GPSGSGK+ L N+    +   S S R   +A    S L D R  + +
Sbjct: 354 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYS-LRDLRNQIAM 412

Query: 114 EDIDLLDFNDT 124
              D++ FNDT
Sbjct: 413 VSQDVVLFNDT 423


>gi|66766353|ref|YP_241115.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|81307653|sp|Q4V0S8|DNAA_XANC8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|66571685|gb|AAY47095.1| chromosomal replication initiator [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 442

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R                FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALHDKAMDQFKRQFH 202

Query: 110 ---PVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI     +D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGMDRTQEEFFHTFNALFDGRQHIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRSITVEFAQETLRD 340


>gi|221065684|ref|ZP_03541789.1| DnaA regulatory inactivator Hda [Comamonas testosteroni KF-1]
 gi|264679763|ref|YP_003279672.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni
           CNB-2]
 gi|220710707|gb|EED66075.1| DnaA regulatory inactivator Hda [Comamonas testosteroni KF-1]
 gi|262210278|gb|ACY34376.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni
           CNB-2]
          Length = 235

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 8/180 (4%)

Query: 69  LVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FND 123
           L G +GSGKS L     +  R       + + +        +    VL++D+D+   F  
Sbjct: 54  LWGEAGSGKSHLLKAVREALREQGAMVGWMDASTPFPPEFDERWAAVLMDDVDIYTPFQQ 113

Query: 124 TQLFHIINSIHQYDSSL---LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
            + F+   +     + L   ++ A   PV+      DL +RL    V ++ L D+     
Sbjct: 114 ARAFNWFVNATSPATGLPRWVLAAGQLPVADLKMREDLRTRLGWGHVYQLHLLDESARRA 173

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           V+ +    R +F+  ++  Y+++R  R L    +L+D +D  AL     IT  L   +L+
Sbjct: 174 VLRQEADARGVFLSDEVMDYMLRRFSRDLGSLMQLLDMLDGFALRNKRAITIPLLKTMLE 233


>gi|78045557|ref|YP_361732.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|123744129|sp|Q3BZT1|DNAA_XANC5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78033987|emb|CAJ21632.1| chromosomal replication initiator protein DnaA [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 442

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 91/235 (38%), Gaps = 27/235 (11%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
           ++F   +    + L + +AI+ A R  D         ++L G +G GK+ L     +  R
Sbjct: 110 YTFANFVEGRSNQLGLAAAIQAAQRPGDR----AHNPLLLYGSTGLGKTHLMFAAGNALR 165

Query: 90  STR-------------FSNIAKSLDSILIDTRK-------PVLLEDIDLL---DFNDTQL 126
                           FS + ++L    +D  K        +L++DI      D    + 
Sbjct: 166 QANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDRTQEEF 225

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++      +++T   +P       P L SRL     V I  PD +    +++   
Sbjct: 226 FHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKA 285

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++
Sbjct: 286 RERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340


>gi|226952106|ref|ZP_03822570.1| DnaA family chromosomal replication initiator [Acinetobacter sp.
           ATCC 27244]
 gi|294651081|ref|ZP_06728418.1| DnaA-type chromosomal replication initiator [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226837162|gb|EEH69545.1| DnaA family chromosomal replication initiator [Acinetobacter sp.
           ATCC 27244]
 gi|292823030|gb|EFF81896.1| DnaA-type chromosomal replication initiator [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 232

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 21/155 (13%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114
           SR+ I  G +G+GKS L +   D         I  SL ++L         ++    V L+
Sbjct: 40  SRLYI-YGGAGTGKSHLLSAICDSYLELGRPAIKVSLLALLDAPIEAITALEFYDLVALD 98

Query: 115 DIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DID +         +FH++N+   ++  L+ ++R  P+   + LPDL SRL  A  VK  
Sbjct: 99  DIDAISGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKA- 154

Query: 172 LPDD-DFLEK--VIVKMFADRQIFIDKKLAAYIVQ 203
            P+   F+++  ++  +   R I  D+++  Y++ 
Sbjct: 155 -PNGSSFVDRQALLQSVMTRRGIHFDQQIVDYLLH 188


>gi|53718753|ref|YP_107739.1| putative ABC transporter ATP-binding protein [Burkholderia
           pseudomallei K96243]
 gi|121600997|ref|YP_992385.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           SAVP1]
 gi|124383689|ref|YP_001026813.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           NCTC 10229]
 gi|134281193|ref|ZP_01767902.1| lipid A export permease/ATP-binding protein MsbA [Burkholderia
           pseudomallei 305]
 gi|217420284|ref|ZP_03451790.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 576]
 gi|226195328|ref|ZP_03790917.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811496|ref|YP_002895947.1| lipid A export permease/ATP-binding protein MsbA [Burkholderia
           pseudomallei MSHR346]
 gi|238563095|ref|ZP_00439427.2| lipid A export permease/ATP-binding protein MsbA [Burkholderia
           mallei GB8 horse 4]
 gi|242317469|ref|ZP_04816485.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 1106b]
 gi|251767293|ref|ZP_02266692.2| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           PRL-20]
 gi|254175688|ref|ZP_04882348.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           ATCC 10399]
 gi|254181268|ref|ZP_04887865.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 1655]
 gi|254190628|ref|ZP_04897135.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195011|ref|ZP_04901440.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei S13]
 gi|254207519|ref|ZP_04913869.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           JHU]
 gi|254261650|ref|ZP_04952704.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 1710a]
 gi|254298454|ref|ZP_04965906.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 406e]
 gi|254359935|ref|ZP_04976205.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           2002721280]
 gi|67468746|sp|Q62IG3|MSBA_BURMA RecName: Full=Lipid A export ATP-binding/permease protein MsbA
 gi|67468747|sp|Q63VX7|MSBA_BURPS RecName: Full=Lipid A export ATP-binding/permease protein MsbA
 gi|122064493|sp|Q3JUI6|MSBA_BURP1 RecName: Full=Lipid A export ATP-binding/permease protein MsbA
 gi|52209167|emb|CAH35111.1| putative ABC transport system, ATP-binding protein [Burkholderia
           pseudomallei K96243]
 gi|121229807|gb|ABM52325.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           SAVP1]
 gi|124291709|gb|ABN00978.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           NCTC 10229]
 gi|134247499|gb|EBA47584.1| lipid A export permease/ATP-binding protein MsbA [Burkholderia
           pseudomallei 305]
 gi|147751413|gb|EDK58480.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           JHU]
 gi|148029175|gb|EDK87080.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           2002721280]
 gi|157808143|gb|EDO85313.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 406e]
 gi|157938303|gb|EDO93973.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160696732|gb|EDP86702.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           ATCC 10399]
 gi|169651759|gb|EDS84452.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei S13]
 gi|184211806|gb|EDU08849.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 1655]
 gi|217397588|gb|EEC37604.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 576]
 gi|225932530|gb|EEH28528.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506047|gb|ACQ98365.1| lipid A export permease/ATP-binding protein MsbA [Burkholderia
           pseudomallei MSHR346]
 gi|238521385|gb|EEP84837.1| lipid A export permease/ATP-binding protein MsbA [Burkholderia
           mallei GB8 horse 4]
 gi|242140708|gb|EES27110.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 1106b]
 gi|243063198|gb|EES45384.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei
           PRL-20]
 gi|254220339|gb|EET09723.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           pseudomallei 1710a]
          Length = 596

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           S+   P  +V L GPSGSGK+ L N+    +   S S R   +A    S L D R  + +
Sbjct: 376 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYS-LRDLRNQIAM 434

Query: 114 EDIDLLDFNDT 124
              D++ FNDT
Sbjct: 435 VSQDVVLFNDT 445


>gi|330721534|gb|EGG99570.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC2047]
          Length = 91

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
            V LPDL +RL +  V ++    D+   +++     ++ + +  + A YI+ R ERS+  
Sbjct: 2   AVQLPDLLTRLASCAVFQVKTLSDEGKVRLLCDRADEKGVELPVESAQYILNRSERSIGR 61

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             +++D++D  +LS G    R L    +KET +
Sbjct: 62  LLEILDRLDQSSLSAG----RKLTIPFIKETMR 90


>gi|225028838|ref|ZP_03718030.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353]
 gi|224953834|gb|EEG35043.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353]
          Length = 448

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 27/211 (12%)

Query: 60  PSWPSRVVILVGPSGSGKSCL-----ANIWSDKS-------RSTRFSNIAKSLDSILIDT 107
           P      + L G +G GK+ L      +I +++         S +F+N  + +DS+  D 
Sbjct: 141 PGGAYNPLFLYGGAGLGKTHLMHSIAHHIINNRPDLRVLYVTSEKFTN--ELIDSLKHDK 198

Query: 108 RKPVL--LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVC 154
            K       +ID+L  +D Q            FH  N +H+    +++++   P      
Sbjct: 199 NKEFRDKYRNIDVLLIDDIQFIIGKESTQEEFFHTFNELHEAKKQIVISSDKHPREIATL 258

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +      I  PD +    ++ K      + I++++  Y+   +  ++   E 
Sbjct: 259 EERLRSRFEWGITADIQPPDYETKMAILKKRAELEHLDINQEVMQYVATNINSNIRELEG 318

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            ++K+   A      +T  LA   LK+T +C
Sbjct: 319 ALNKIYVFANLEKKPVTLELAENALKDTIEC 349


>gi|254448991|ref|ZP_05062445.1| DnaA regulatory inactivator Hda [gamma proteobacterium HTCC5015]
 gi|198261385|gb|EDY85676.1| DnaA regulatory inactivator Hda [gamma proteobacterium HTCC5015]
          Length = 234

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 105 IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
           ++ ++ V ++DI ++      +  +F +IN   + D+ LLM++     S    L DL SR
Sbjct: 94  LEQQQLVCIDDIHVIAGQAGWEEAVFDLINRCREQDTRLLMSSSIPASSHAFELGDLRSR 153

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           L    V+++     D   + +      R  FI ++   Y+     RS+ F    ++++D 
Sbjct: 154 LAWGPVLQLHELQQDEKWQWLQARAEYRGFFISEESGQYLFAHYPRSMAFLNYALEELDR 213

Query: 222 LALSRGMGIT 231
           + L     +T
Sbjct: 214 ITLQTQRKVT 223


>gi|326435411|gb|EGD80981.1| spastin [Salpingoeca sp. ATCC 50818]
          Length = 492

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 10/76 (13%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWSD 86
           G++ DD++     ++A+R I  WP+           P++ ++L GP G+GK+ LA   + 
Sbjct: 216 GVTMDDVIGLKKAKEALREIVIWPALRPELFQGLRAPAKGLLLFGPPGNGKTMLAKAVAH 275

Query: 87  KSRSTRFSNIAKSLDS 102
            ++ T F+  A SL S
Sbjct: 276 SAQCTFFNISASSLTS 291


>gi|302404251|ref|XP_002999963.1| SAP1 [Verticillium albo-atrum VaMs.102]
 gi|261361145|gb|EEY23573.1| SAP1 [Verticillium albo-atrum VaMs.102]
          Length = 783

 Score = 38.1 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +SRST FS  A SL S
Sbjct: 527 PARGMLLFGPPGTGKTMLARAVATESRSTFFSISASSLTS 566


>gi|325577813|ref|ZP_08148088.1| DnaA regulatory inactivator Hda [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160558|gb|EGC72684.1| DnaA regulatory inactivator Hda [Haemophilus parainfluenzae ATCC
           33392]
          Length = 231

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 15/185 (8%)

Query: 69  LVGPSGSGKS----CLANIWSDKSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLL 119
           L G    GK+     L N +  + RS  +  ++KS     ++   ++ ++ V L+D+  +
Sbjct: 46  LWGSQSVGKTHLLRALCNEYIQQQRSAIYVPLSKSQYFSTAVFENLEQQELVCLDDLQTI 105

Query: 120 DFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
             N   +  LF + N I     +LL+ +A   P S  V LPDL SRLK     ++ +P  
Sbjct: 106 IGNSEWEIALFDLFNRIKTNGKTLLVVSADQSPTSLPVKLPDLASRLKWGESYQL-IPLS 164

Query: 176 DFLEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           D  +  ++K  A  R I +    A +I  R++R +   ++ + ++D  +L     +T   
Sbjct: 165 DEQKFAVLKQNAHQRGIILSDDTANFIFTRLDRDMATLKEALVQLDKASLQAKRNLTIPF 224

Query: 235 AAEVL 239
              +L
Sbjct: 225 VKSIL 229


>gi|307544864|ref|YP_003897343.1| ABC transporter ATP-binding protein [Halomonas elongata DSM 2581]
 gi|307216888|emb|CBV42158.1| ABC-type transport system ATP-binding protein [Halomonas elongata
           DSM 2581]
          Length = 279

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 15/184 (8%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128
           ++GP+G+GK+ + +I + K+R    S    S   +L      +    I    F    +F 
Sbjct: 62  IIGPNGAGKTTMMDIITGKTRPDTGSAWFGSRHDLLTMNEPEIASLGIG-RKFQKPTVFE 120

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA--ATVVKISL----------PDDD 176
            +      + ++    R  P        ++C R++   AT+  I L              
Sbjct: 121 ALTVFENLELAMAADKRILPTLTARLTGEVCERIEEVLATIGLIELRHAPAGILSHGQKQ 180

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGITRSL 234
           +LE  ++ M   R + +D+ +A    Q MER+      L  K     + +   MG  RS+
Sbjct: 181 WLEIGMLLMQRPRLLLVDEPVAGMTEQEMERTAELLTGLAGKGKQSVVVVEHDMGFVRSI 240

Query: 235 AAEV 238
           A  V
Sbjct: 241 ARTV 244


>gi|262089713|gb|ACY24808.1| DnaA family protein [uncultured organism]
          Length = 237

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVK 184
           +FH+ N +      LL+ A   P    + L DL SRL+     ++ SL D+D  + + ++
Sbjct: 122 IFHLYNRLRDAGKCLLVAAEHSPRELALSLEDLRSRLQWGLTYQVHSLTDEDKQQALQMR 181

Query: 185 MFADRQIFIDKKLAAYIVQRMER 207
             A R + +   +A YI+QR+ R
Sbjct: 182 ARA-RGLELSDDVAQYIIQRLPR 203


>gi|148240934|ref|YP_001220435.1| ABC transporter ATP-binding protein [Bradyrhizobium sp. BTAi1]
 gi|146411310|gb|ABQ39763.1| Putative ABC transporter (ATP binding protein) [Bradyrhizobium sp.
           BTAi1]
          Length = 235

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 14/84 (16%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT- 124
           VV+L+GPSGSGK+ L NI     R T      + LD  L D      LED +L  +    
Sbjct: 37  VVVLLGPSGSGKTTLLNIMGGLDRPTSGRLFFRDLD--LTD------LEDRELTKYRRDH 88

Query: 125 -----QLFHIINSIHQYDSSLLMT 143
                Q ++++ S+  Y++  L+T
Sbjct: 89  VGFVFQFYNLVPSLTAYENVALVT 112


>gi|313835170|gb|EFS72884.1| replication initiator protein DnaA [Propionibacterium acnes
           HL037PA2]
 gi|314929146|gb|EFS92977.1| replication initiator protein DnaA [Propionibacterium acnes
           HL044PA1]
 gi|314970905|gb|EFT15003.1| replication initiator protein DnaA [Propionibacterium acnes
           HL037PA3]
 gi|328905785|gb|EGG25561.1| chromosomal replication initiator protein DnaA [Propionibacterium
           sp. P08]
          Length = 500

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144
           +R+  F    + +D +L+D        DI  L+       + FH  N++H     ++MT+
Sbjct: 248 NRTREFRRSYRDVDVLLVD--------DIQFLESKIQTQEEFFHTFNTLHNAQKQIVMTS 299

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P       P L SR +   +  I  PD +    ++ +  A  +I ++  +  +I  R
Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  ++   E  + ++   A      +  SLA  VLK+
Sbjct: 360 IHTNIRELEGALIRVTAFASLNQQPVDTSLAEVVLKD 396


>gi|253699565|ref|YP_003020754.1| Chromosomal replication initiator DnaA [Geobacter sp. M21]
 gi|251774415|gb|ACT16996.1| Chromosomal replication initiator DnaA [Geobacter sp. M21]
          Length = 234

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 102/237 (43%), Gaps = 29/237 (12%)

Query: 27  QLFFSFPRCLGISRDDLLV----HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           Q  F FP       ++ +V     +A + A +L++        ++ + GP GSGK+ L  
Sbjct: 2   QFIFDFPVVPRFGFENFVVCGGNKTAYQFAKKLVEDSTE---NLLYIYGPEGSGKTHLLT 58

Query: 83  IWSDKSRSTRFS-NIAKSLDSILIDTRKP------------VLLEDIDLL-DFNDT--QL 126
             S+      FS   A SL    + +  P            ++L+D+ LL +  +   +L
Sbjct: 59  ALSNSIDGKYFSFRDAGSLYGASVGSEDPSRLAEHFQDAAALVLDDLHLLPNLQEVRVEL 118

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           + + N+ +     + ++    P         L SRL    V ++ + DD+    ++ K+ 
Sbjct: 119 WELFNAFYSSGRKIAISGLMPPKELPHLDGHLTSRLLWGLVARMDVSDDESRRMILKKLA 178

Query: 187 ADRQIFIDKKLAAYIVQRMER---SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            DRQ+ +   +   ++ R+ R   SLV+A   ++ ++  A+S    ++  LA E  +
Sbjct: 179 EDRQMALPDDVIDEMLLRVRRDIPSLVYA---LENINRYAISTKRKVSLRLAKEAFR 232


>gi|254424343|ref|ZP_05038061.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           PCC 7335]
 gi|196191832|gb|EDX86796.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           PCC 7335]
          Length = 460

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           RF    + +D IL+D      ++ I+  ++   + FH  N++H+    +++ +   P   
Sbjct: 212 RFREQYREVDVILVDD-----IQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQI 266

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
                 LCSR     +  I  PD +    ++ K     Q+ I + +  YI 
Sbjct: 267 PRLQDRLCSRFSMGLIADIQSPDFETRMAILQKKAEYEQVSIARDVTEYIA 317


>gi|189239513|ref|XP_975553.2| PREDICTED: similar to spastin CG5977-PA [Tribolium castaneum]
          Length = 690

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 10/77 (12%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWS 85
           L +  +D++   A +QA++ +   PS           P+R ++L GP G+GK+ LA   +
Sbjct: 410 LQVQWEDIIGQDAAKQALQEMVILPSLRPELFTGLRTPARGLLLFGPPGNGKTLLARAVA 469

Query: 86  DKSRSTRFSNIAKSLDS 102
            + R+T FS  A SL S
Sbjct: 470 TECRATFFSISAASLTS 486


>gi|225850462|ref|YP_002730696.1| chromosomal replication initiator protein DnaA [Persephonella
           marina EX-H1]
 gi|225646033|gb|ACO04219.1| chromosomal replication initiator protein DnaA [Persephonella
           marina EX-H1]
          Length = 437

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 115 DIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           D+DLL  +D Q           L+HI N++H     +++++ T P +       L SR  
Sbjct: 196 DVDLLLIDDVQFLEGKERTQIELYHIFNALHLIGKQVILSSDTPPKNLKGLQERLKSRFV 255

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +  VV++  PD      +I K   D  I +   +   I + +  ++   E  + K+   +
Sbjct: 256 SGLVVEVKAPDLQTKISIINKKSRDMNIKLPNDVILLIAKTINTNIRELEGSLSKLKAYS 315

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  +T  +A EVLK+
Sbjct: 316 EILGRPVTFDMAREVLKD 333


>gi|82749778|ref|YP_415519.1| chromosomal replication initiation protein [Staphylococcus aureus
           RF122]
 gi|123727433|sp|Q2YUP1|DNAA_STAAB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|82655309|emb|CAI79689.1| chromosomal replicator initiator protein [Staphylococcus aureus
           RF122]
          Length = 453

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + F+  N +HQ +  +++++   P         L SR +   +V I+ PD +    ++ K
Sbjct: 233 EFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQK 292

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG--ITRSLAAEVLKET 242
              + ++ I  +   YI  +++ ++   E  + ++  LA S+ +G  IT  L AE LK+ 
Sbjct: 293 KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL--LAYSQLLGKPITTELTAEALKDI 350

Query: 243 QQC 245
            Q 
Sbjct: 351 IQA 353


>gi|262089788|gb|ACY24881.1| DnaA family protein [uncultured organism]
          Length = 237

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVK 184
           +FH+ N +      LL+ A   P    + L DL SRL+     ++ SL D+D  + + ++
Sbjct: 122 IFHLYNRLRDAGKCLLVAAEHSPRELALSLEDLRSRLQWGLTYQVHSLTDEDKQQALQMR 181

Query: 185 MFADRQIFIDKKLAAYIVQRMER 207
             A R + +   +A YI+QR+ R
Sbjct: 182 ARA-RGLELSDDVAQYIIQRLPR 203


>gi|126651063|ref|ZP_01723274.1| ABC transporter (ATP-binding protein) [Bacillus sp. B14905]
 gi|126592264|gb|EAZ86313.1| ABC transporter (ATP-binding protein) [Bacillus sp. B14905]
          Length = 253

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 11/71 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+   N  S   R T           I+I+ R P +L D DL  F  ++L
Sbjct: 37  VAVMGPSGSGKTTFLNSVSTIDRPTA--------GDIVINNRNPYVLNDEDLAKFRRSEL 88

Query: 127 ---FHIINSIH 134
              F   N +H
Sbjct: 89  GFVFQDFNLVH 99


>gi|295406865|ref|ZP_06816669.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8819]
 gi|294968330|gb|EFG44355.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8819]
          Length = 453

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + F+  N +HQ +  +++++   P         L SR +   +V I+ PD +    ++ K
Sbjct: 233 EFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQK 292

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG--ITRSLAAEVLKET 242
              + ++ I  +   YI  +++ ++   E  + ++  LA S+ +G  IT  L AE LK+ 
Sbjct: 293 KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL--LAYSQLLGKPITTELTAEALKDI 350

Query: 243 QQC 245
            Q 
Sbjct: 351 IQA 353


>gi|285018887|ref|YP_003376598.1| DNAa-homolog protein hda [Xanthomonas albilineans GPE PC73]
 gi|283474105|emb|CBA16606.1| putative dnaa-homolog protein hda [Xanthomonas albilineans]
          Length = 244

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEK 180
           ++  LF   N       +LL TA   P    +CLPDL SRL  A   +I LP  +D    
Sbjct: 111 DEVALFDFHNRARSAGVTLLYTAHAMPDGLALCLPDLHSRL--AQCTRIVLPPLEDADRA 168

Query: 181 VIVKMFADRQIFIDKKLAA-YIVQRMERSLVFAEKLVDKMDNLALS 225
            +++  A R+  + +  A  +++  + R L     L++++D  +L+
Sbjct: 169 AVLRERAQRRGLVLEDAAIDWLLTHVGRDLTGLIGLLERLDRESLA 214


>gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15925706|ref|NP_373239.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus N315]
 gi|21281730|ref|NP_644816.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49484913|ref|YP_042134.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57651109|ref|YP_184912.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161673|ref|YP_492723.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88193824|ref|YP_498609.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148266448|ref|YP_001245391.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392481|ref|YP_001315156.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151220213|ref|YP_001331036.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156978332|ref|YP_001440591.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161508267|ref|YP_001573926.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253730400|ref|ZP_04864565.1| replication initiation protein DnaA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733838|ref|ZP_04868003.1| replication initiation protein DnaA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|254663935|ref|ZP_05143407.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257793539|ref|ZP_05642518.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9781]
 gi|258411155|ref|ZP_05681434.1| replication initiation protein DnaA [Staphylococcus aureus A9763]
 gi|258420941|ref|ZP_05683875.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9719]
 gi|258438580|ref|ZP_05689803.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A9299]
 gi|258443964|ref|ZP_05692302.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A8115]
 gi|258446220|ref|ZP_05694380.1| replication initiation protein dnaA [Staphylococcus aureus A6300]
 gi|258449121|ref|ZP_05697227.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A6224]
 gi|258451366|ref|ZP_05699397.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A5948]
 gi|258454401|ref|ZP_05702369.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A5937]
 gi|262049433|ref|ZP_06022305.1| chromosomal replicator initiator protein [Staphylococcus aureus
           D30]
 gi|262051894|ref|ZP_06024109.1| chromosomal replicator initiator protein [Staphylococcus aureus
           930918-3]
 gi|269201691|ref|YP_003280960.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282894280|ref|ZP_06302510.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8117]
 gi|282902632|ref|ZP_06310525.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282918069|ref|ZP_06325819.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus D139]
 gi|282920720|ref|ZP_06328439.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9765]
 gi|282921291|ref|ZP_06329009.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus C427]
 gi|282927751|ref|ZP_06335365.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A10102]
 gi|283767791|ref|ZP_06340706.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus H19]
 gi|284023038|ref|ZP_06377436.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus 132]
 gi|294849829|ref|ZP_06790569.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9754]
 gi|296275686|ref|ZP_06858193.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297209451|ref|ZP_06925849.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245900|ref|ZP_06929762.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8796]
 gi|300911475|ref|ZP_07128924.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|56748673|sp|Q6GD89|DNAA_STAAS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56749818|sp|P68865|DNAA_STAAM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56749819|sp|P68866|DNAA_STAAN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56749820|sp|P68867|DNAA_STAAU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56749821|sp|P68868|DNAA_STAAW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|71151805|sp|Q5HJZ5|DNAA_STAAC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123291872|sp|Q2G2H5|DNAA_STAA8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123736033|sp|Q2FKQ5|DNAA_STAA3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166215334|sp|A7WWM4|DNAA_STAA1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|172048750|sp|A6QD41|DNAA_STAAE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189083281|sp|A6TXF1|DNAA_STAA2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189083282|sp|A5INP2|DNAA_STAA9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189083283|sp|A8YYS4|DNAA_STAAT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|1694677|dbj|BAA13755.1| DnaA [Staphylococcus aureus]
 gi|13699918|dbj|BAB41217.1| chromosomal replication initiator protein [Staphylococcus aureus
           subsp. aureus N315]
 gi|14245768|dbj|BAB56163.1| chromosomal replication initiator protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21203165|dbj|BAB93866.1| chromosomal replication initiator protein [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49243356|emb|CAG41773.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57285295|gb|AAW37389.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus COL]
 gi|58578564|dbj|BAD89355.1| DnaA [Staphylococcus aureus]
 gi|87127647|gb|ABD22161.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87201382|gb|ABD29192.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147739517|gb|ABQ47815.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149944933|gb|ABR50869.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150373013|dbj|BAF66273.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156720467|dbj|BAF76884.1| chromosomal replication initiator protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160367076|gb|ABX28047.1| replication initiation protein DnaA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253725880|gb|EES94609.1| replication initiation protein DnaA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728141|gb|EES96870.1| replication initiation protein DnaA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257787511|gb|EEV25851.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9781]
 gi|257840040|gb|EEV64505.1| replication initiation protein DnaA [Staphylococcus aureus A9763]
 gi|257843131|gb|EEV67546.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9719]
 gi|257848139|gb|EEV72131.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A9299]
 gi|257850848|gb|EEV74792.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A8115]
 gi|257855046|gb|EEV77989.1| replication initiation protein dnaA [Staphylococcus aureus A6300]
 gi|257857554|gb|EEV80449.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A6224]
 gi|257860896|gb|EEV83713.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A5948]
 gi|257863495|gb|EEV86255.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A5937]
 gi|259160221|gb|EEW45250.1| chromosomal replicator initiator protein [Staphylococcus aureus
           930918-3]
 gi|259162430|gb|EEW47000.1| chromosomal replicator initiator protein [Staphylococcus aureus
           D30]
 gi|262073981|gb|ACY09954.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282315706|gb|EFB46090.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus C427]
 gi|282318354|gb|EFB48714.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus D139]
 gi|282590511|gb|EFB95589.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A10102]
 gi|282594128|gb|EFB99116.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9765]
 gi|282597091|gb|EFC02050.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282763325|gb|EFC03455.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8117]
 gi|283461670|gb|EFC08754.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus H19]
 gi|285815728|gb|ADC36215.1| Chromosomal replication initiator protein DnaA [Staphylococcus
           aureus 04-02981]
 gi|294823377|gb|EFG39806.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9754]
 gi|296885912|gb|EFH24847.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177265|gb|EFH36518.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8796]
 gi|298693323|gb|ADI96545.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus ED133]
 gi|300887654|gb|EFK82850.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302331773|gb|ADL21966.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|312828564|emb|CBX33406.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315129544|gb|EFT85536.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315197919|gb|EFU28252.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320141418|gb|EFW33261.1| replication initiator protein DnaA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144401|gb|EFW36166.1| replication initiator protein DnaA [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323439698|gb|EGA97416.1| chromosomal replication initiation protein [Staphylococcus aureus
           O11]
 gi|323443271|gb|EGB00888.1| chromosomal replication initiation protein [Staphylococcus aureus
           O46]
 gi|329725589|gb|EGG62068.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus 21172]
 gi|329731888|gb|EGG68248.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus 21189]
 gi|329732572|gb|EGG68922.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 453

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + F+  N +HQ +  +++++   P         L SR +   +V I+ PD +    ++ K
Sbjct: 233 EFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQK 292

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG--ITRSLAAEVLKET 242
              + ++ I  +   YI  +++ ++   E  + ++  LA S+ +G  IT  L AE LK+ 
Sbjct: 293 KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL--LAYSQLLGKPITTELTAEALKDI 350

Query: 243 QQC 245
            Q 
Sbjct: 351 IQA 353


>gi|297537214|ref|YP_003672983.1| IstB domain-containing protein ATP-binding protein [Methylotenera
           sp. 301]
 gi|297538441|ref|YP_003674210.1| IstB domain-containing protein ATP-binding protein [Methylotenera
           sp. 301]
 gi|297539655|ref|YP_003675424.1| IstB domain-containing protein ATP-binding protein [Methylotenera
           sp. 301]
 gi|297539802|ref|YP_003675571.1| IstB domain-containing protein ATP-binding protein [Methylotenera
           sp. 301]
 gi|297256561|gb|ADI28406.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301]
 gi|297257788|gb|ADI29633.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301]
 gi|297259002|gb|ADI30847.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301]
 gi|297259149|gb|ADI30994.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301]
          Length = 241

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 21/113 (18%)

Query: 65  RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKP---------- 110
           R +I VG  G+GK+ LA+      + K    RF N+   ++ + +D  +           
Sbjct: 99  RNIIFVGGPGTGKTHLASAIGVDAATKGARVRFYNVLDLVNQLELDKDQQKHKLAQQLAK 158

Query: 111 ---VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
              V+L+++  L F+      LFH+I+ +H+  S ++ T   F   WG    D
Sbjct: 159 YDLVILDELGYLPFSQKGGALLFHLISQLHEQTSIIITTNLAFS-EWGKLFAD 210


>gi|103485499|ref|YP_615060.1| chromosomal replication initiation protein [Sphingopyxis alaskensis
           RB2256]
 gi|122984662|sp|Q1GN68|DNAA_SPHAL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|98975576|gb|ABF51727.1| chromosomal replication initiator protein DnaA [Sphingopyxis
           alaskensis RB2256]
          Length = 453

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 122 NDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           N TQ  L H I+ +      L++TA   P         L SRL    V  I  P+DD  E
Sbjct: 229 NSTQEELLHTIDDLMTAGKRLVVTADRPPAMLDGVEARLLSRLSGGLVADIEAPEDDLRE 288

Query: 180 KVIVKMFADR-QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           ++I +  A    + +   + A++V+   R++   E  ++K+   A   G  I   LA + 
Sbjct: 289 RIIRQRLAAMPMVEVPDDVIAWLVKHFTRNIRELEGALNKLLAYAALTGARIDLMLAEDR 348

Query: 239 LKE 241
           L E
Sbjct: 349 LAE 351


>gi|49482254|ref|YP_039478.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|221141516|ref|ZP_03566009.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|257424197|ref|ZP_05600626.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257426874|ref|ZP_05603276.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257429510|ref|ZP_05605897.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257432157|ref|ZP_05608520.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257435118|ref|ZP_05611169.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus M876]
 gi|258423237|ref|ZP_05686129.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9635]
 gi|282907048|ref|ZP_06314896.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282910027|ref|ZP_06317835.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282912275|ref|ZP_06320071.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282912915|ref|ZP_06320707.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282922543|ref|ZP_06330233.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus C101]
 gi|283959485|ref|ZP_06376926.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293497968|ref|ZP_06665822.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293511558|ref|ZP_06670252.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus M809]
 gi|293550167|ref|ZP_06672839.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295429298|ref|ZP_06821920.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297589200|ref|ZP_06947841.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus MN8]
 gi|304379949|ref|ZP_07362678.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|56748687|sp|Q6GKU4|DNAA_STAAR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|49240383|emb|CAG39029.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257273215|gb|EEV05317.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257276505|gb|EEV07956.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257279991|gb|EEV10578.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257283036|gb|EEV13168.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257285714|gb|EEV15830.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus M876]
 gi|257846566|gb|EEV70588.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9635]
 gi|269939527|emb|CBA12169.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282314764|gb|EFB45150.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus C101]
 gi|282323015|gb|EFB53334.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282323971|gb|EFB54287.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282326093|gb|EFB56398.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282329947|gb|EFB59468.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|283789077|gb|EFC27904.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290919214|gb|EFD96290.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096899|gb|EFE27157.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291465516|gb|EFF08048.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus M809]
 gi|295127057|gb|EFG56701.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297577711|gb|EFH96424.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus MN8]
 gi|302749912|gb|ADL64089.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304341529|gb|EFM07439.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312436858|gb|ADQ75929.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195227|gb|EFU25615.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus CGS00]
 gi|329312724|gb|AEB87137.1| Chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus T0131]
          Length = 453

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + F+  N +HQ +  +++++   P         L SR +   +V I+ PD +    ++ K
Sbjct: 233 EFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQK 292

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG--ITRSLAAEVLKET 242
              + ++ I  +   YI  +++ ++   E  + ++  LA S+ +G  IT  L AE LK+ 
Sbjct: 293 KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL--LAYSQLLGKPITTELTAEALKDI 350

Query: 243 QQC 245
            Q 
Sbjct: 351 IQA 353


>gi|145294043|ref|YP_001136864.1| chromosomal replication initiation protein [Corynebacterium
           glutamicum R]
 gi|166201881|sp|A4Q9R9|DNAA_CORGB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|140843963|dbj|BAF52962.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 524

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145
           R   F    ++LD +++D        DI  L   +    + FH  N++HQ D  +++++ 
Sbjct: 270 RQETFKRRYRNLDILMVD--------DIQFLAGKEGTQEEFFHTFNALHQADKQIILSSD 321

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L +R +   +  I  PD +    +++K        +D+++   I  R 
Sbjct: 322 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAQTDGTHVDREVLELIASRF 381

Query: 206 ERSL 209
           E S+
Sbjct: 382 ESSI 385


>gi|306834799|ref|ZP_07467863.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726]
 gi|304569327|gb|EFM44828.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726]
          Length = 566

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145
           R   F    ++LD +++D        DI  L+  ++   + FH  N++HQ +  +++++ 
Sbjct: 312 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 363

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L +R +   +  I  PD +    +++K  A     +D+ +   I  R 
Sbjct: 364 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRF 423

Query: 206 ERSL 209
           E S+
Sbjct: 424 ESSI 427


>gi|289667649|ref|ZP_06488724.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 442

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R                FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRSITVEFAQETLRD 340


>gi|289662284|ref|ZP_06483865.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 442

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R                FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRSITVEFAQETLRD 340


>gi|283469230|emb|CAQ48441.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 453

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + F+  N +HQ +  +++++   P         L SR +   +V I+ PD +    ++ K
Sbjct: 233 EFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQK 292

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG--ITRSLAAEVLKET 242
              + ++ I  +   YI  +++ ++   E  + ++  LA S+ +G  IT  L AE LK+ 
Sbjct: 293 KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL--LAYSQLLGKPITTELTAEALKDI 350

Query: 243 QQC 245
            Q 
Sbjct: 351 IQA 353


>gi|21326649|gb|AAL30089.1| chromosomal replication initiator protein DnaA [Xanthomonas
           campestris pv. campestris]
          Length = 442

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R                FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRSITVEFAQETLRD 340


>gi|21229479|ref|NP_635396.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|188989397|ref|YP_001901407.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. campestris str. B100]
 gi|38257667|sp|Q8PEH5|DNAA_XANCP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735863|sp|B0RLI8|DNAA_XANCB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|21110939|gb|AAM39320.1| chromosomal replication initiator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|167731157|emb|CAP49329.1| chromosomal replication initiator protein [Xanthomonas campestris
           pv. campestris]
          Length = 442

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R                FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRSITVEFAQETLRD 340


>gi|19551251|ref|NP_599253.1| chromosomal replication initiation protein [Corynebacterium
           glutamicum ATCC 13032]
 gi|62388893|ref|YP_224295.1| chromosomal replication initiation protein [Corynebacterium
           glutamicum ATCC 13032]
 gi|38257663|sp|Q8NUD8|DNAA_CORGL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|21322765|dbj|BAB97394.1| ATPase involved in DNA replication initiation [Corynebacterium
           glutamicum ATCC 13032]
 gi|41324226|emb|CAF18566.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 524

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145
           R   F    ++LD +++D        DI  L   +    + FH  N++HQ D  +++++ 
Sbjct: 270 RQETFKRRYRNLDILMVD--------DIQFLAGKEGTQEEFFHTFNALHQADKQIILSSD 321

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L +R +   +  I  PD +    +++K        +D+++   I  R 
Sbjct: 322 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAQTDGTHVDREVLELIASRF 381

Query: 206 ERSL 209
           E S+
Sbjct: 382 ESSI 385


>gi|15836606|ref|NP_297294.1| chromosomal replication initiation protein [Xylella fastidiosa
           9a5c]
 gi|14194685|sp|Q9PHE3|DNAA_XYLFA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|9104761|gb|AAF82814.1|AE003855_1 chromosomal replication initiator [Xylella fastidiosa 9a5c]
          Length = 439

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%)

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIH 134
           S +     DKS   +F      +D++LID        DI      D    + FH  N++ 
Sbjct: 180 SAMIRALQDKSMD-QFKRQFHQIDALLID--------DIQFFAGKDRTQEEFFHTFNALF 230

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
                +++T   +P       P L SRL     V I  PD +    +++    +R   I 
Sbjct: 231 DGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGATIP 290

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++A  I ++M  ++   E  ++ +   A   G  +T   + E L++
Sbjct: 291 DEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETLRD 337


>gi|325926219|ref|ZP_08187577.1| chromosomal replication initiator protein DnaA [Xanthomonas
           perforans 91-118]
 gi|325543401|gb|EGD14826.1| chromosomal replication initiator protein DnaA [Xanthomonas
           perforans 91-118]
          Length = 442

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R                FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRSITVEFAQETLRD 340


>gi|299143462|ref|ZP_07036542.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517947|gb|EFI41686.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 447

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 27/186 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--- 119
           P++ ++ V         + +I ++K+    F N  + +D +LID        DI  +   
Sbjct: 173 PNKKILYVTSEQFTNELINSIQTNKNE--HFRNKYRKVDLLLID--------DIQFIADK 222

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           D    + FH  N +H+ +  +++T+   P         L SR     VV I  PD   LE
Sbjct: 223 DRTQEEFFHTFNELHESNKQIVLTSDKPPKDIKSLEERLISRFAWGLVVDIGTPD---LE 279

Query: 180 K--VIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               I++  AD + F +   +  +I Q ++ ++   E         ALSR M  ++    
Sbjct: 280 TRIAILRSKADSEGFNVPDNIINFIAQNVKSNIRELEG--------ALSRIMAYSKLTVG 331

Query: 237 EVLKET 242
           E+ ++T
Sbjct: 332 EMTEQT 337


>gi|319775073|ref|YP_004137561.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Haemophilus influenzae
           F3047]
 gi|317449664|emb|CBY85870.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Haemophilus influenzae
           F3047]
          Length = 454

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI N++ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|213404020|ref|XP_002172782.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
 gi|212000829|gb|EEB06489.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
          Length = 718

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +
Sbjct: 470 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKFL 512


>gi|329123016|ref|ZP_08251587.1| DNA-directed DNA replication initiator protein [Haemophilus
           aegyptius ATCC 11116]
 gi|327471947|gb|EGF17387.1| DNA-directed DNA replication initiator protein [Haemophilus
           aegyptius ATCC 11116]
          Length = 454

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI N++ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|309751341|gb|ADO81325.1| Chromosomal replication initiator protein [Haemophilus influenzae
           R2866]
          Length = 454

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI N++ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|310795052|gb|EFQ30513.1| ATPase [Glomerella graminicola M1.001]
          Length = 809

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +SRST FS  A SL S
Sbjct: 553 PARGMLLFGPPGTGKTMLARAVATESRSTFFSISASSLTS 592


>gi|194334994|ref|YP_002016854.1| type I secretion system ATPase [Prosthecochloris aestuarii DSM 271]
 gi|194312812|gb|ACF47207.1| type I secretion system ATPase [Prosthecochloris aestuarii DSM 271]
          Length = 576

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 63  PSRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNI-AKSLDSILIDTRKPVLLEDID 117
           P  +V L+GPSGSGKS  A     IW + + +    +I   S D  +I      L +D++
Sbjct: 361 PGELVALIGPSGSGKSTFARSLLGIWPETTGTVLIDSIPVSSWDRSMIGPMSGYLPQDVE 420

Query: 118 LLD 120
           L D
Sbjct: 421 LFD 423


>gi|71275534|ref|ZP_00651820.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Dixon]
 gi|71900181|ref|ZP_00682321.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Ann-1]
 gi|170729252|ref|YP_001774685.1| chromosomal replication initiation protein [Xylella fastidiosa M12]
 gi|71163834|gb|EAO13550.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Dixon]
 gi|71730070|gb|EAO32161.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Ann-1]
 gi|167964045|gb|ACA11055.1| chromosomal replication initiator [Xylella fastidiosa M12]
          Length = 443

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%)

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIH 134
           S +     DKS   +F      +D++LID        DI      D    + FH  N++ 
Sbjct: 184 SAMIRALQDKSMD-QFKRQFHQIDALLID--------DIQFFAGKDRTQEEFFHTFNALF 234

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
                +++T   +P       P L SRL     V I  PD +    +++    +R   I 
Sbjct: 235 DGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGATIP 294

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++A  I ++M  ++   E  ++ +   A   G  +T   + E L++
Sbjct: 295 DEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETLRD 341


>gi|294627438|ref|ZP_06706022.1| chromosomal replication initiation protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294665122|ref|ZP_06730425.1| chromosomal replication initiation protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292598259|gb|EFF42412.1| chromosomal replication initiation protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292605123|gb|EFF48471.1| chromosomal replication initiation protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 442

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R                FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRSITVEFAQETLRD 340


>gi|270010589|gb|EFA07037.1| hypothetical protein TcasGA2_TC010011 [Tribolium castaneum]
          Length = 625

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 10/72 (13%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           +D++   A +QA++ +   PS           P+R ++L GP G+GK+ LA   + + R+
Sbjct: 350 EDIIGQDAAKQALQEMVILPSLRPELFTGLRTPARGLLLFGPPGNGKTLLARAVATECRA 409

Query: 91  TRFSNIAKSLDS 102
           T FS  A SL S
Sbjct: 410 TFFSISAASLTS 421


>gi|68249578|ref|YP_248690.1| chromosomal replication initiation protein [Haemophilus influenzae
           86-028NP]
 gi|68057777|gb|AAX88030.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae 86-028NP]
          Length = 454

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI N++ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|145628065|ref|ZP_01783866.1| chromosomal replication initiation protein [Haemophilus influenzae
           22.1-21]
 gi|144979840|gb|EDJ89499.1| chromosomal replication initiation protein [Haemophilus influenzae
           22.1-21]
 gi|301169719|emb|CBW29320.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Haemophilus influenzae
           10810]
          Length = 454

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI N++ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|302670287|ref|YP_003830247.1| phosphoribulokinase/uridine kinase family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302394760|gb|ADL33665.1| phosphoribulokinase/uridine kinase family protein [Butyrivibrio
           proteoclasticus B316]
          Length = 550

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDKSRS 90
           C G   + +LV  A++++ R+ D       R+    V++ GPS SGK+  AN  S + R+
Sbjct: 253 CEGRINEMILVQEALQES-RIADIARKIFKRIDVKFVMIAGPSSSGKTSFANRLSIQLRT 311

Query: 91  TRFSNIAKSLDSILIDTRKPVLLED 115
              +    SLD+  +D  K  L ED
Sbjct: 312 YGLTPHPISLDNYFVDREKTPLNED 336


>gi|83644734|ref|YP_433169.1| DnaA family protein [Hahella chejuensis KCTC 2396]
 gi|83632777|gb|ABC28744.1| DnaA family protein [Hahella chejuensis KCTC 2396]
          Length = 232

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 15/140 (10%)

Query: 113 LEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
           LE  D+L F+D             LFH+ N   +     L+T+   P      LPDL +R
Sbjct: 93  LESFDVLCFDDIDAIAGQPEWEEALFHLFNRCRERGCKWLITSAEAPSQTPFLLPDLKTR 152

Query: 162 LKAATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           L     V+  LP+ D ++++ V     A+    +  ++  YI++R  R L     +++++
Sbjct: 153 LAWGECVR--LPELDEVQRINVLDIKAANIGFRLSDEVKQYIMRRAPRDLSSLSLILERL 210

Query: 220 DNLALSRGMGITRSLAAEVL 239
           D  +L     IT      V+
Sbjct: 211 DKASLVEKRPITVPFVKSVM 230


>gi|229843947|ref|ZP_04464088.1| chromosomal replication initiation protein [Haemophilus influenzae
           6P18H1]
 gi|229812941|gb|EEP48629.1| chromosomal replication initiation protein [Haemophilus influenzae
           6P18H1]
          Length = 454

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI N++ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|21240775|ref|NP_640357.1| chromosomal replication initiation protein [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|38257669|sp|Q8PRG2|DNAA_XANAC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|21106039|gb|AAM34893.1| chromosomal replication initiator [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 442

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R                FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRSITVEFAQETLRD 340


>gi|167580317|ref|ZP_02373191.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           thailandensis TXDOH]
 gi|167618440|ref|ZP_02387071.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           thailandensis Bt4]
          Length = 574

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           S+   P  +V L GPSGSGK+ L N+    +   S + R   +A    S L D R  + +
Sbjct: 354 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGTVRVDGVALPEYS-LHDLRNQIAM 412

Query: 114 EDIDLLDFNDT 124
              D++ FNDT
Sbjct: 413 VSQDVVLFNDT 423


>gi|72381841|ref|YP_291196.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. NATL2A]
 gi|72001691|gb|AAZ57493.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. NATL2A]
          Length = 466

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 61/152 (40%), Gaps = 5/152 (3%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           F N  +  D IL+D      ++ I+  ++   + FH  N++H+    +++T+   P    
Sbjct: 217 FRNRYREADLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQIVLTSDRPPSQIP 271

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR     +  I  PD +    ++ K     ++ + + L  +I  R   ++   
Sbjct: 272 RLQERLISRFSMGLIADIQAPDLETRMAILQKKAEHERMRLPRDLIQFIAGRFTSNIREL 331

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           E    +    A   G+ +T    A +L  T Q
Sbjct: 332 EGAFTRAVAFASITGLPMTVESVAPMLDPTGQ 363


>gi|255691401|ref|ZP_05415076.1| ATPase [Bacteroides finegoldii DSM 17565]
 gi|260623047|gb|EEX45918.1| ATPase [Bacteroides finegoldii DSM 17565]
          Length = 473

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 23/173 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSL------DSILIDTRKPVL--LE 114
           + L G SG GK+ LAN    K +      R   ++  L      DS+  +T    +   +
Sbjct: 169 LFLYGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228

Query: 115 DIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
            ID+L  +D Q            FHI N +HQ    L++T+   PV        L +R K
Sbjct: 229 TIDVLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFK 288

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
              V ++  P  +  + ++        +   +++  YI + +  S+   E +V
Sbjct: 289 WGMVAELEKPTVELRKNILRNKIHRDGLQFPEEVIDYIAENVNESVRDLEGIV 341


>gi|145638185|ref|ZP_01793795.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittII]
 gi|145272514|gb|EDK12421.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittII]
          Length = 454

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F    +SLD++L+D        DI      +    + FHI N++ +    +++T+  +P
Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR        I  PD +    +++K   +  + + +++A +I QR+  +
Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLNLPEEVAFFIAQRLRTN 320

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  ++++  +   +G  I      + LK+
Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|227502242|ref|ZP_03932291.1| chromosomal replication initiation protein [Corynebacterium
           accolens ATCC 49725]
 gi|227077066|gb|EEI15029.1| chromosomal replication initiation protein [Corynebacterium
           accolens ATCC 49725]
          Length = 382

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145
           R   F    ++LD +++D        DI  L+  ++   + FH  N++HQ +  +++++ 
Sbjct: 128 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 179

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L +R +   +  I  PD +    +++K  A     +D+ +   I  R 
Sbjct: 180 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRF 239

Query: 206 ERSL 209
           E S+
Sbjct: 240 ESSI 243


>gi|332087942|gb|EGI93067.1| dnaA regulatory inactivator Hda [Shigella boydii 5216-82]
          Length = 225

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 126 LFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183
           +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ + +
Sbjct: 109 IFDLYNRIQESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 168

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 169 RARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 224


>gi|224477956|ref|YP_002635562.1| chromosomal replication initiation protein [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254777913|sp|B9DPX4|DNAA_STACT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|222422563|emb|CAL29377.1| chromosomal replication initiator protein [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 453

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147
           + + +F    +++D +LID      ++ I   +    + FH  N +HQ    +++++   
Sbjct: 201 NETEQFREKYRNIDVLLIDD-----IQFIQNKEQTQEEFFHTFNDLHQTGKQIVISSDRP 255

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P         L SR +   +V I+ PD +    ++ K   +  + I  +   YI  +++ 
Sbjct: 256 PKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKLEEEDVDIPLESLTYIANQIQS 315

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           ++   E  + ++   +  +   IT  L AE LK+  Q 
Sbjct: 316 NIRELEGALTRVIAYSRLQNEAITTELTAEALKDIIQT 353


>gi|118396729|ref|XP_001030702.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89285014|gb|EAR83039.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 354

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           P R ++L GP G+GK+ +A   + +S +T ++  A  +DSIL
Sbjct: 145 PPRGILLFGPPGNGKTLIAKAVATESNATFYNISANEIDSIL 186


>gi|169806503|ref|XP_001827996.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348]
 gi|161779136|gb|EDQ31161.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348]
          Length = 419

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 10/77 (12%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWS 85
           + IS +D++  + ++QA++ I  WP            P + ++L GP G+GK+ +    +
Sbjct: 140 MSISWNDIIGLNKVKQAIKEIIIWPMLRPDIFVGLRNPPKGLLLFGPPGTGKTMIGKCIA 199

Query: 86  DKSRSTRFSNIAKSLDS 102
            +  +T FS  A SL S
Sbjct: 200 AQVNATFFSISASSLTS 216


>gi|83721115|ref|YP_441539.1| lipid A export ATP-binding/permease MsbA [Burkholderia
           thailandensis E264]
 gi|257139772|ref|ZP_05588034.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           thailandensis E264]
 gi|122064495|sp|Q2SZW0|MSBA_BURTA RecName: Full=Lipid A export ATP-binding/permease protein MsbA
 gi|83654940|gb|ABC39003.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia
           thailandensis E264]
          Length = 596

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           S+   P  +V L GPSGSGK+ L N+    +   S + R   +A    S L D R  + +
Sbjct: 376 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGTVRVDGVALPEYS-LHDLRNQIAM 434

Query: 114 EDIDLLDFNDT 124
              D++ FNDT
Sbjct: 435 VSQDVVLFNDT 445


>gi|167835969|ref|ZP_02462852.1| ABC transporter, permease/ATP-binding protein [Burkholderia
           thailandensis MSMB43]
          Length = 574

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           S+   P  +V L GPSGSGK+ L N+    +   S + R   +A    S L D R  + +
Sbjct: 354 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGAVRVDGVALPEYS-LHDLRNQIAM 412

Query: 114 EDIDLLDFNDT 124
              D++ FNDT
Sbjct: 413 VSQDVVLFNDT 423


>gi|124025331|ref|YP_001014447.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. NATL1A]
 gi|166214689|sp|A2C122|DNAA_PROM1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123960399|gb|ABM75182.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. NATL1A]
          Length = 464

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 61/152 (40%), Gaps = 5/152 (3%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           F N  +  D IL+D      ++ I+  ++   + FH  N++H+    +++T+   P    
Sbjct: 215 FRNRYREADLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQIVLTSDRPPSQIP 269

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR     +  I  PD +    ++ K     ++ + + L  +I  R   ++   
Sbjct: 270 RLQERLISRFSMGLIADIQAPDLETRMAILQKKAEHERMRLPRDLIQFIAGRFTSNIREL 329

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           E    +    A   G+ +T    A +L  T Q
Sbjct: 330 EGAFTRAVAFASITGLPMTVESVAPMLDPTGQ 361


>gi|29347553|ref|NP_811056.1| chromosomal replication initiation protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572014|ref|ZP_04849418.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           1_1_6]
 gi|298383755|ref|ZP_06993316.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           1_1_14]
 gi|38257553|sp|Q8A5U5|DNAA_BACTN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|29339453|gb|AAO77250.1| chromosomal replication initiator protein dnaA [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838194|gb|EES66281.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           1_1_6]
 gi|298263359|gb|EFI06222.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           1_1_14]
          Length = 470

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 33/135 (24%)

Query: 67  VILVGPSGSGKSCLAN--------IWSDK--------------------SRSTRFSNIAK 98
           + L G SG GK+ LAN        +++DK                    + +  F N  +
Sbjct: 169 LFLYGASGVGKTHLANAIGTKIKELYADKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           ++D ++ID      +++   +       FHI N +HQ    L++T+   PV        L
Sbjct: 229 TIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERL 283

Query: 159 CSRLKAATVVKISLP 173
            +R K   V ++  P
Sbjct: 284 LTRFKWGMVAELEKP 298


>gi|120555908|ref|YP_960259.1| ABC transporter related [Marinobacter aquaeolei VT8]
 gi|120325757|gb|ABM20072.1| ABC transporter related protein [Marinobacter aquaeolei VT8]
          Length = 274

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 25/188 (13%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD----FNDT 124
           ++GP+G+GK+ + +I + K+R    S    S  ++L    +P    DI  L     F   
Sbjct: 62  IIGPNGAGKTTMMDIITGKTRPDTGSVWFGSRHNLL-RMNEP----DIATLGIGRKFQKP 116

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL--------------KAATVVKI 170
            +F  +      + ++    R  P    +   +   R+              K A +  +
Sbjct: 117 TVFEALTVFENLELAMAADKRILPTLTAIMTAEYRDRIDEILEMIGLQALRDKPAGI--L 174

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           S     +LE  ++ M   R + +D+ +A    Q MER+      L  K   + +   MG 
Sbjct: 175 SHGQKQWLEIGMLLMQKPRLLLVDEPVAGMTEQEMERTAELLTSLAGKQSVVVVEHDMGF 234

Query: 231 TRSLAAEV 238
            RS+A +V
Sbjct: 235 VRSIARKV 242


>gi|182680573|ref|YP_001828733.1| chromosomal replication initiation protein [Xylella fastidiosa M23]
 gi|182630683|gb|ACB91459.1| chromosomal replication initiator protein DnaA [Xylella fastidiosa
           M23]
          Length = 443

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%)

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIH 134
           S +     DKS   +F      +D++LID        DI      D    + FH  N++ 
Sbjct: 184 SAMIRALQDKSMD-QFKRQFHQIDALLID--------DIQFFAGKDRTQEEFFHTFNALF 234

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
                +++T   +P       P L SRL     V I  PD +    +++    +R   I 
Sbjct: 235 DGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGATIP 294

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++A  I ++M  ++   E  ++ +   A   G  +T   + E L++
Sbjct: 295 DEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETLRD 341


>gi|171741734|ref|ZP_02917541.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC
           27678]
 gi|306823996|ref|ZP_07457370.1| DNA-directed DNA replication initiator protein [Bifidobacterium
           dentium ATCC 27679]
 gi|309801964|ref|ZP_07696078.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           dentium JCVIHMP022]
 gi|171277348|gb|EDT45009.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC
           27678]
 gi|304552994|gb|EFM40907.1| DNA-directed DNA replication initiator protein [Bifidobacterium
           dentium ATCC 27679]
 gi|308221412|gb|EFO77710.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           dentium JCVIHMP022]
          Length = 500

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 11/166 (6%)

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135
            L +   +  +   F+   + +D +LID        DI  L   +    Q FH  N++HQ
Sbjct: 237 ALGDTNQNSGQIKEFNRRYREVDVLLID--------DIQFLSGKEATLEQFFHTFNTLHQ 288

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
            +  +++ +   P         L SR ++   V +  PD +    ++  M       I  
Sbjct: 289 ANKRIVIASDVPPKDLKGFQARLISRFESGLTVDVKPPDLETRIAILRMMATMNGSNIPN 348

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +   I +R   ++   E  ++++  +A      +TR+LA   L++
Sbjct: 349 DVLNLIAERFTENIRELEGALNRVTAMASLSNQPVTRALAEHTLQD 394


>gi|329945795|ref|ZP_08293482.1| ABC transporter, ATP-binding protein [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328528243|gb|EGF55221.1| ABC transporter, ATP-binding protein [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 1264

 Score = 37.4 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 22/117 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P  V  L+GPSGSGKS LA +            IA+  D         V +  +DL D +
Sbjct: 423 PGTVTALLGPSGSGKSTLATL------------IARFADP----DAGAVRIGGVDLRDMD 466

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-----SLPD 174
           +  L+  ++ I Q D+ LL T     +S G    DL     AA V +I     +LPD
Sbjct: 467 EDTLYSTVSFILQ-DAQLLGTTVRENISLGRPDADLEQVRAAARVARIDEEIMALPD 522


>gi|283454960|ref|YP_003359524.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           dentium Bd1]
 gi|283101594|gb|ADB08700.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           dentium Bd1]
          Length = 500

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 11/166 (6%)

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135
            L +   +  +   F+   + +D +LID        DI  L   +    Q FH  N++HQ
Sbjct: 237 ALGDTNQNSGQIKEFNRRYREVDVLLID--------DIQFLSGKEATLEQFFHTFNTLHQ 288

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
            +  +++ +   P         L SR ++   V +  PD +    ++  M       I  
Sbjct: 289 ANKRIVIASDVPPKDLKGFQARLISRFESGLTVDVKPPDLETRIAILRMMATMNGSNIPN 348

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +   I +R   ++   E  ++++  +A      +TR+LA   L++
Sbjct: 349 DVLNLIAERFTENIRELEGALNRVTAMASLSNQPVTRALAEHTLQD 394


>gi|325922759|ref|ZP_08184493.1| chromosomal replication initiator protein DnaA [Xanthomonas
           gardneri ATCC 19865]
 gi|325546755|gb|EGD17875.1| chromosomal replication initiator protein DnaA [Xanthomonas
           gardneri ATCC 19865]
          Length = 442

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R                FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRSITVEFAQETLRD 340


>gi|28197946|ref|NP_778260.1| chromosomal replication initiation protein [Xylella fastidiosa
           Temecula1]
 gi|32129493|sp|Q87FC6|DNAA_XYLFT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|28056006|gb|AAO27909.1| chromosomal replication initiator [Xylella fastidiosa Temecula1]
 gi|307579027|gb|ADN62996.1| chromosomal replication initiation protein [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 439

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%)

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIH 134
           S +     DKS   +F      +D++LID        DI      D    + FH  N++ 
Sbjct: 180 SAMIRALQDKSMD-QFKRQFHQIDALLID--------DIQFFAGKDRTQEEFFHTFNALF 230

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
                +++T   +P       P L SRL     V I  PD +    +++    +R   I 
Sbjct: 231 DGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGATIP 290

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++A  I ++M  ++   E  ++ +   A   G  +T   + E L++
Sbjct: 291 DEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETLRD 337


>gi|34763037|ref|ZP_00144012.1| ATP-binding protein (contains P-loop) [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237742019|ref|ZP_04572500.1| ATP-binding protein [Fusobacterium sp. 4_1_13]
 gi|256845360|ref|ZP_05550818.1| ATP-binding protein [Fusobacterium sp. 3_1_36A2]
 gi|294785343|ref|ZP_06750631.1| ATP-binding protein (contains P-loop) [Fusobacterium sp. 3_1_27]
 gi|27887297|gb|EAA24393.1| ATP-binding protein (contains P-loop) [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229429667|gb|EEO39879.1| ATP-binding protein [Fusobacterium sp. 4_1_13]
 gi|256718919|gb|EEU32474.1| ATP-binding protein [Fusobacterium sp. 3_1_36A2]
 gi|294487057|gb|EFG34419.1| ATP-binding protein (contains P-loop) [Fusobacterium sp. 3_1_27]
          Length = 288

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            ++I+ G SG+GK+   NI  D +  T   N+   L+  L+DT    L   ID+  F +T
Sbjct: 5   HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63

Query: 125 Q-LFHIINSIHQ 135
           +  F  IN I +
Sbjct: 64  KDFFKFINYIKE 75


>gi|71901968|ref|ZP_00684019.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Ann-1]
 gi|71728273|gb|EAO30453.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Ann-1]
          Length = 443

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%)

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIH 134
           S +     DKS   +F      +D++LID        DI      D    + FH  N++ 
Sbjct: 184 SAMIRALQDKSMD-QFKRQFHQIDALLID--------DIQFFAGKDRTQEEFFHTFNALF 234

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
                +++T   +P       P L SRL     V I  PD +    +++    +R   I 
Sbjct: 235 DGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGATIP 294

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++A  I ++M  ++   E  ++ +   A   G  +T   + E L++
Sbjct: 295 DEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETLRD 341


>gi|237744871|ref|ZP_04575352.1| ATP-binding protein [Fusobacterium sp. 7_1]
 gi|229432100|gb|EEO42312.1| ATP-binding protein [Fusobacterium sp. 7_1]
          Length = 290

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            ++I+ G SG+GK+   NI  D +  T   N+   L+  L+DT    L   ID+  F +T
Sbjct: 5   HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63

Query: 125 Q-LFHIINSIHQ 135
           +  F  IN I +
Sbjct: 64  KDFFKFINYIKE 75


>gi|260494652|ref|ZP_05814782.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260197814|gb|EEW95331.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 290

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            ++I+ G SG+GK+   NI  D +  T   N+   L+  L+DT    L   ID+  F +T
Sbjct: 5   HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63

Query: 125 Q-LFHIINSIHQ 135
           +  F  IN I +
Sbjct: 64  KDFFKFINYIKE 75


>gi|325915701|ref|ZP_08178006.1| chromosomal replication initiator protein DnaA [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538118|gb|EGD09809.1| chromosomal replication initiator protein DnaA [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 442

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R                FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRSITVEFAQETLRD 340


>gi|77917619|ref|YP_355434.1| chromosomal replication initiation protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77543702|gb|ABA87264.1| chromosomal replication initiator protein DnaA [Pelobacter
           carbinolicus DSM 2380]
          Length = 452

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           F    +S+D +LID      ++ I   +    + FH  N+++     +++T+  FP    
Sbjct: 207 FRTKFRSMDVLLIDD-----VQFIAGKERTQEEFFHTFNALYDSHKQIVVTSDKFPKEIP 261

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVF 211
                L SR +   +  I  PD +  ++ I+KM A++  I + K++A ++   +  ++  
Sbjct: 262 GLEERLRSRFEWGLIADIQAPDME-TKQAILKMKAEQNGIDLPKEVALFLASAVSSNIRE 320

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            E  + ++   A      IT S+A EVLK+
Sbjct: 321 LEGYLVRIGAYASLTATPITLSMAQEVLKD 350


>gi|330916411|ref|XP_003297409.1| hypothetical protein PTT_07804 [Pyrenophora teres f. teres 0-1]
 gi|311329919|gb|EFQ94491.1| hypothetical protein PTT_07804 [Pyrenophora teres f. teres 0-1]
          Length = 789

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +SRST F+  A SL S
Sbjct: 533 PARGMLLFGPPGTGKTMLARAVATESRSTFFAISASSLTS 572


>gi|315500819|ref|YP_004079706.1| chromosomal replication initiator protein dnaa [Micromonospora sp.
           L5]
 gi|315407438|gb|ADU05555.1| chromosomal replication initiator protein DnaA [Micromonospora sp.
           L5]
          Length = 609

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L+  +    + FH  N++H  +  +++T+   P         L +R +   +
Sbjct: 371 LLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLL 430

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    ++ K  A  ++F    +  +I  R+  S+   E  + ++   A    
Sbjct: 431 ADIQPPDLETRIAILQKKAAQERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTR 490

Query: 228 MGITRSLAAEVLKE 241
             +  SLA EVL++
Sbjct: 491 SSVELSLAEEVLRD 504


>gi|290957939|ref|YP_003489121.1| ATP-binding protein [Streptomyces scabiei 87.22]
 gi|260647465|emb|CBG70570.1| putative ATP-binding protein [Streptomyces scabiei 87.22]
          Length = 209

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 20/26 (76%)

Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLA 81
          + S P  PSRVV+L GPSGSGKS LA
Sbjct: 1  MSSHPPIPSRVVLLTGPSGSGKSLLA 26


>gi|227506187|ref|ZP_03936236.1| chromosomal replication initiation protein [Corynebacterium
           striatum ATCC 6940]
 gi|227197211|gb|EEI77259.1| chromosomal replication initiation protein [Corynebacterium
           striatum ATCC 6940]
          Length = 537

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145
           R   F    ++LD +++D        DI  L+  ++   + FH  N++HQ +  +++++ 
Sbjct: 283 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 334

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L +R +   +  I  PD +    +++K  A     +D+ +   I  R 
Sbjct: 335 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRF 394

Query: 206 ERSL 209
           E S+
Sbjct: 395 ESSI 398


>gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G37]
 gi|1351474|sp|P47311|Y065_MYCGE RecName: Full=Putative ABC transporter ATP-binding protein MG065
 gi|1045740|gb|AAC71283.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G37]
 gi|166078865|gb|ABY79483.1| ABC transporter, ATP-binding protein [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 466

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           ++++GPSGSGK+ L NI S   R++  S I    + I ++ RK
Sbjct: 265 IVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRK 307


>gi|251794037|ref|YP_003008768.1| chromosomal replication initiation protein [Paenibacillus sp.
           JDR-2]
 gi|247541663|gb|ACS98681.1| chromosomal replication initiator protein DnaA [Paenibacillus sp.
           JDR-2]
          Length = 450

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTA 144
           +R   F N  +++D +LID        DI  L   D    + FH  N++H+    +++++
Sbjct: 197 NRGESFRNKYRNIDVLLID--------DIQFLAGKDGTQEEFFHTFNALHEERKQIVISS 248

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P         L SR +   +  I  PD +    ++ K      + I  +   YI  +
Sbjct: 249 DRTPKEIPTLEERLRSRFEWGLITDIQAPDLETRIAILRKKAKAENLDIPNEAMVYIANQ 308

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   +      IT  LAAE LK+
Sbjct: 309 IDTNIRELEGALIRVVAYSSLINQDITSHLAAEALKD 345


>gi|145592567|ref|YP_001156864.1| chromosomal replication initiator protein DnaA [Salinispora tropica
           CNB-440]
 gi|145301904|gb|ABP52486.1| chromosomal replication initiator protein DnaA [Salinispora tropica
           CNB-440]
          Length = 587

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L+  +    + FH  N++H  +  +++T+   P         L +R +   +
Sbjct: 349 LLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLL 408

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    ++ K  A  ++F    +  +I  R+  S+   E  + ++   A    
Sbjct: 409 ADIQPPDLETRIAILQKKAAQERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTR 468

Query: 228 MGITRSLAAEVLKE 241
             +  SLA EVL++
Sbjct: 469 SSVELSLAEEVLRD 482


>gi|145588795|ref|YP_001155392.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047201|gb|ABP33828.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 587

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL---DSILIDTRKPVLLEDIDLL 119
           P  VV  VGPSG GKS L N+     + T        +   D +L D RK +     D++
Sbjct: 370 PGEVVAFVGPSGGGKSTLVNLLPRFFKPTSGHIFLDGIPLEDILLSDVRKQIAFVSQDVI 429

Query: 120 DFNDT 124
            FND+
Sbjct: 430 LFNDS 434


>gi|302864509|ref|YP_003833146.1| chromosomal replication initiator protein DnaA [Micromonospora
           aurantiaca ATCC 27029]
 gi|302567368|gb|ADL43570.1| chromosomal replication initiator protein DnaA [Micromonospora
           aurantiaca ATCC 27029]
          Length = 607

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L+  +    + FH  N++H  +  +++T+   P         L +R +   +
Sbjct: 369 LLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLL 428

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    ++ K  A  ++F    +  +I  R+  S+   E  + ++   A    
Sbjct: 429 ADIQPPDLETRIAILQKKAAQERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTR 488

Query: 228 MGITRSLAAEVLKE 241
             +  SLA EVL++
Sbjct: 489 SSVELSLAEEVLRD 502


>gi|253581087|ref|ZP_04858347.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847623|gb|EES75593.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 451

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/157 (19%), Positives = 71/157 (45%), Gaps = 5/157 (3%)

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
            + S  T+F    +++D +L+D  + ++ ++    +F     FH  NS+H     +++++
Sbjct: 195 GNNSAMTKFREKYRNIDVLLVDDIQFIIGKESTQEEF-----FHTFNSLHSAKKQIIISS 249

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P    +      SR +   +  I+LPD +    ++ K        I++++  YI   
Sbjct: 250 DKPPKDMEILEERFRSRFEWGLIADITLPDYETRMAILHKKEEMDGYDINEEVIKYIANN 309

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  ++K+   A      +T  LA + LK+
Sbjct: 310 IKSNIRELEGAINKVMAFAKLEKKEVTLELAEQALKD 346


>gi|256026594|ref|ZP_05440428.1| hypothetical protein PrD11_01105 [Fusobacterium sp. D11]
 gi|289764597|ref|ZP_06523975.1| ATP-binding protein [Fusobacterium sp. D11]
 gi|289716152|gb|EFD80164.1| ATP-binding protein [Fusobacterium sp. D11]
          Length = 150

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            ++I+ G SG+GK+   NI  D +  T   N+   L+  L+DT    L   ID+  F +T
Sbjct: 5   HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63

Query: 125 Q-LFHIINSIHQ 135
           +  F  IN I +
Sbjct: 64  KDFFKFINYIKE 75


>gi|254303069|ref|ZP_04970427.1| possible ATP-binding protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323261|gb|EDK88511.1| possible ATP-binding protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 290

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            ++I+ G SG+GK+   NI  D +  T   N+   L+  L+DT    L   ID+  F +T
Sbjct: 5   HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63

Query: 125 Q-LFHIINSIHQ 135
           +  F  IN I +
Sbjct: 64  KDFFKFINYIKE 75


>gi|255660193|ref|ZP_05405602.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G37]
          Length = 474

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           ++++GPSGSGK+ L NI S   R++  S I    + I ++ RK
Sbjct: 273 IVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRK 315


>gi|284034944|ref|YP_003384874.1| chromosomal replication initiator protein DnaA [Spirosoma linguale
           DSM 74]
 gi|283814237|gb|ADB36075.1| chromosomal replication initiator protein DnaA [Spirosoma linguale
           DSM 74]
          Length = 469

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FHI N +HQ    ++MT+   P +       L SR K      +  PD +    +I K 
Sbjct: 253 FFHIFNHLHQSGKQIIMTSDRAPRALDGLEDRLLSRFKWGLSADLQTPDLETRIAIIQKK 312

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKET 242
                I+ID  +  Y+   +  ++   E  +V  M   +L+R     R +  E+ K+T
Sbjct: 313 LQAEGIYIDDTVIEYLAHSVNTNVRELEGVIVSLMAQASLNR-----REIDLELAKQT 365


>gi|166709896|ref|ZP_02241103.1| chromosomal replication initiation protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 442

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109
           ++L G +G GK+ L     +  R  +             FS + ++L    +D  K    
Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202

Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N++      +++T   +P       P L SRL 
Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++    +R   I   +A  I ++M  ++   E  ++ +   A
Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322

Query: 224 LSRGMGITRSLAAEVLKE 241
              G  IT   A E L++
Sbjct: 323 NFTGRLITVEFAQETLRD 340


>gi|150951678|ref|XP_001388033.2| member of the AAA ATPase family of proteins [Scheffersomyces
           stipitis CBS 6054]
 gi|149388797|gb|EAZ64010.2| member of the AAA ATPase family of proteins [Pichia stipitis CBS
           6054]
          Length = 810

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 560 PTRGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 599


>gi|254573080|ref|XP_002493649.1| Putative ATPase of the AAA family [Pichia pastoris GS115]
 gi|238033448|emb|CAY71470.1| Putative ATPase of the AAA family [Pichia pastoris GS115]
 gi|328354523|emb|CCA40920.1| Protein SAP1 [Pichia pastoris CBS 7435]
          Length = 719

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 469 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 508


>gi|145224707|ref|YP_001135385.1| ABC transporter related [Mycobacterium gilvum PYR-GCK]
 gi|145217193|gb|ABP46597.1| ABC transporter related protein [Mycobacterium gilvum PYR-GCK]
          Length = 241

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P   V L+GPSGSGKS L NI     R T+ +  IA +  + L +++   L  D     F
Sbjct: 50  PGEFVCLMGPSGSGKSTLLNIIGGLDRPTKGNVRIAGTDTATLTESQYAALRHDTIGFIF 109

Query: 122 NDTQLFHIINSIHQYDSSLL 141
               L   ++++   +  L+
Sbjct: 110 QSYNLIPFLSAVENVELPLM 129


>gi|88798539|ref|ZP_01114123.1| chromosomal replication initiation protein [Reinekea sp. MED297]
 gi|88778639|gb|EAR09830.1| chromosomal replication initiation protein [Reinekea sp. MED297]
          Length = 495

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
           F    +SLD++LID        DI      D +  + FH  N++ + +  +++T   FP 
Sbjct: 250 FKRFYRSLDALLID--------DIQFFAKKDRSQEEFFHTFNALLEGNQQVILTCDRFPK 301

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L SR      V +  PD +    +++K     ++ +  + A +I QR+  ++
Sbjct: 302 EIDGLEDRLKSRFGWGLTVAVEPPDLETRVAILMKKAEQAKVKLPAESAFFIAQRIRSNV 361

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              E  + ++   A   G  I  +L  E LK+
Sbjct: 362 RELEGALKRVIANAQFIGAPIDTALVKEALKD 393


>gi|217968466|ref|YP_002353700.1| chromosomal replication initiation protein [Thauera sp. MZ1T]
 gi|217505793|gb|ACK52804.1| chromosomal replication initiator protein DnaA [Thauera sp. MZ1T]
          Length = 500

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDF-NDTQ--LFHIINSIHQYDSSLLMTARTFPV 149
           F    +SLD ++ID        DI   +  N TQ   FH  N++ +    +++T  T+P 
Sbjct: 255 FKRYYRSLDMLIID--------DIQFFNNKNRTQEEFFHAFNALTEARKQIVITCDTYPK 306

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L SR      V+I  P+ +    ++ K     ++ +D  +A  I + +  ++
Sbjct: 307 DIQGLEDRLISRFDWGLTVQIEPPELEMRVAILKKKAEALRVLVDDDVAFLIAKNLRSNV 366

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              E  ++K+   A   G  I   +A E LK+
Sbjct: 367 RELEGALNKVVAYARFHGRQIGLEVAKEALKD 398


>gi|159035675|ref|YP_001534928.1| chromosomal replication initiator protein DnaA [Salinispora
           arenicola CNS-205]
 gi|157914510|gb|ABV95937.1| chromosomal replication initiator protein DnaA [Salinispora
           arenicola CNS-205]
          Length = 591

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L+  +    + FH  N++H  +  +++T+   P         L +R +   +
Sbjct: 353 LLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLL 412

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    ++ K  A  ++F    +  +I  R+  S+   E  + ++   A    
Sbjct: 413 ADIQPPDLETRIAILQKKAAQERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTR 472

Query: 228 MGITRSLAAEVLKE 241
             +  SLA EVL++
Sbjct: 473 SSVELSLAEEVLRD 486


>gi|49478775|ref|YP_038869.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330331|gb|AAT60977.1| ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 256

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L NI S    +++          ILID +  V + D +L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNILSTIDTASK--------GEILIDGKDIVKMNDDELALFRRNHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA  V
Sbjct: 89  GFIFQDYNLLD--------TLTVRENIALPLALSKVKAKEV 121


>gi|289613840|emb|CBI59323.1| unnamed protein product [Sordaria macrospora]
          Length = 902

 Score = 37.0 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 610 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 649


>gi|332883707|gb|EGK03987.1| chromosomal replication initiator protein DnaA [Dysgonomonas mossii
           DSM 22836]
          Length = 467

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 8/125 (6%)

Query: 84  WSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           ++D  R   +  F N  + +D ++ID      + ++  ++     LFHI N +HQ +  L
Sbjct: 209 YADAGRYNTTNDFINFYQGIDVLIIDD-----IHELAGIEKTQNTLFHIFNHLHQNNKQL 263

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           ++T    P         L +R +     K+  PD     K++        + I + +  Y
Sbjct: 264 ILTCDKSPSELHGVEERLLTRFRWGLTTKVDNPDKQLRLKILQNKILHDGLSIPEDVVDY 323

Query: 201 IVQRM 205
           I + +
Sbjct: 324 IAENV 328


>gi|228994231|ref|ZP_04154129.1| Efflux ABC transporter, ATP-binding protein [Bacillus
           pseudomycoides DSM 12442]
 gi|228765524|gb|EEM14180.1| Efflux ABC transporter, ATP-binding protein [Bacillus
           pseudomycoides DSM 12442]
          Length = 260

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILI+ +  V + D  L  F    L
Sbjct: 41  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIEGKDIVKMNDDKLALFRRNHL 92

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   SR+KA+ +
Sbjct: 93  GFIFQDYNLLD--------TLTVKENIALPLALSRVKASEI 125


>gi|56477034|ref|YP_158623.1| chromosomal replication initiation protein [Aromatoleum aromaticum
           EbN1]
 gi|71151792|sp|Q5P4P0|DNAA_AROAE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56313077|emb|CAI07722.1| Chromosomal replication iniciator protein DnaA [Aromatoleum
           aromaticum EbN1]
          Length = 481

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDF-NDTQ--LFHIINSIHQYDSSLLMTARTFPV 149
           F    +SLD +LID        DI   +  N TQ   FH  N++ +    +++T  T+P 
Sbjct: 236 FKRYYRSLDLLLID--------DIQFFNNKNRTQEEFFHAFNALTEARKQIVITCDTYPK 287

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L SR      V+I  P+ +    ++ K     ++ +   +A  I + +  ++
Sbjct: 288 DIQGLEDRLISRFDWGLTVQIEPPELEMRVAILQKKAEALRVDLHDDVAFLIAKNLRSNV 347

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              E  ++K+   A   G GIT  +A + LK+
Sbjct: 348 RELEGALNKVVAFARFHGRGITLEVAKDALKD 379


>gi|322701880|gb|EFY93628.1| AAA family ATPase [Metarhizium acridum CQMa 102]
          Length = 774

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 518 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 557


>gi|237740768|ref|ZP_04571249.1| ATP-binding protein [Fusobacterium sp. 2_1_31]
 gi|229422785|gb|EEO37832.1| ATP-binding protein [Fusobacterium sp. 2_1_31]
          Length = 290

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            ++I+ G SG+GK+   NI  D +  T   N+   L+  L+DT    L   ID+  F +T
Sbjct: 5   HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63

Query: 125 Q-LFHIINSIHQ 135
           +  F  IN I +
Sbjct: 64  KDFFKFINYIKE 75


>gi|121595308|ref|YP_987204.1| chromosomal replication initiator DnaA [Acidovorax sp. JS42]
 gi|222111592|ref|YP_002553856.1| dnaa regulatory inactivator hda [Acidovorax ebreus TPSY]
 gi|120607388|gb|ABM43128.1| Chromosomal replication initiator, DnaA [Acidovorax sp. JS42]
 gi|221731036|gb|ACM33856.1| DnaA regulatory inactivator Hda [Acidovorax ebreus TPSY]
          Length = 230

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 14/183 (7%)

Query: 69  LVGPSGSGKSCLANIWSDKSR----STRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FND 123
           L G +G+GKS L     +  R    S  + + + +L S   +    VLL+++ L      
Sbjct: 49  LWGETGTGKSHLLRATYEALRGQGASVGWLDASVALPSAFDERWSAVLLDEVHLYTTAQQ 108

Query: 124 TQLFH-IINSIHQYDSS--LLMTARTFPVSWGVCLP---DLCSRLKAATVVKISLPDDDF 177
              F+  +N+I+  + +   ++ A   P +    LP   DL +RL    V ++ L D+  
Sbjct: 109 AAAFNWFVNAINPTEGAPRWVLAAGDLPPA---DLPLRDDLRTRLGWGHVFQLQLLDEQE 165

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
              V+ +    R IF+  ++  Y++ R  R L    +L+D++D+ AL     +T  L   
Sbjct: 166 RRAVLRQQADARGIFLADEVMNYMLGRFSRDLGSLMQLLDRLDSFALRTQRAVTVPLLKT 225

Query: 238 VLK 240
           +L+
Sbjct: 226 MLE 228


>gi|320582077|gb|EFW96295.1| Putative ATPase of the AAA family [Pichia angusta DL-1]
          Length = 715

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 465 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 504


>gi|253566260|ref|ZP_04843714.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           3_2_5]
 gi|251945364|gb|EES85802.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           3_2_5]
          Length = 476

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 80/208 (38%), Gaps = 33/208 (15%)

Query: 67  VILVGPSGSGKSCLAN--------IWSDK--------------------SRSTRFSNIAK 98
           + L G SG GK+ LAN        ++ DK                    + +  F N  +
Sbjct: 169 LFLHGASGVGKTHLANAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           ++D ++ID      +++   +       FHI N +HQ    L++T+   PV        L
Sbjct: 229 TIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERL 283

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            +R K   V ++  P  +  + ++        +    ++  YI + +  S+   E +V  
Sbjct: 284 LTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGIVIS 343

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQCD 246
           +   +      I   LA  ++++   C+
Sbjct: 344 IMAHSTIYNKEIDLDLAQRIVRKVVHCE 371


>gi|255033818|ref|YP_003084439.1| chromosomal replication initiator protein DnaA [Dyadobacter
           fermentans DSM 18053]
 gi|254946574|gb|ACT91274.1| chromosomal replication initiator protein DnaA [Dyadobacter
           fermentans DSM 18053]
          Length = 480

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCL--------ANIWSDK----SRSTRFSNIAKSLDSILIDTRKPV--L 112
           +++ G  G GK+ L         N + +K      S +F+N  + ++SI  +T +     
Sbjct: 182 LMMYGGVGLGKTHLVQAIGNYITNHYENKLVLYVSSEKFTN--QFINSIRNNTLQEFTDF 239

Query: 113 LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
              +D+L  +D Q            FHI N +HQ    ++MT+   P         L SR
Sbjct: 240 YMKVDVLAIDDVQFLSGKEKTQDTFFHIFNHLHQLGKQIIMTSDRPPRELQGLQDRLLSR 299

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMD 220
            K      +  PD +    +I K      I ID  +  YI   +  ++   E  +V  M 
Sbjct: 300 FKWGLTADLQAPDFETRIAIIQKKIQSEGISIDYDVIEYIAHSVNSNVRELEGVIVSLMA 359

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +L+R     R++  E+ K T
Sbjct: 360 QASLTR-----RNIDVELAKNT 376


>gi|229163826|ref|ZP_04291769.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           R309803]
 gi|228619646|gb|EEK76529.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           R309803]
          Length = 256

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +++          ILID +  V + D +L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNVLSTIDTASK--------GEILIDGKDIVKMNDDELALFRRNHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA  V
Sbjct: 89  GFIFQDYNLLD--------TLTVQENIALPLALSKVKAKEV 121


>gi|213962527|ref|ZP_03390789.1| chromosomal replication initiator protein DnaA [Capnocytophaga
           sputigena Capno]
 gi|213954853|gb|EEB66173.1| chromosomal replication initiator protein DnaA [Capnocytophaga
           sputigena Capno]
          Length = 473

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 14/160 (8%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCL-ANIWSDKSRST--RFSNIAKSLDSILIDTRKPVL 112
           +D    +P + V+ V      +  + A+   DK ++T   F +  + +D +++D      
Sbjct: 188 VDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLNDFIHFYQLIDVLIVD------ 241

Query: 113 LEDIDLLDFN-DTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             DI  L     TQ   FHI N +HQ    +++T+   PV        L SR K     +
Sbjct: 242 --DIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQRLLSRFKWGLSAE 299

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           +  PD +   K++   F +    I + + AY+ + +  ++
Sbjct: 300 LQTPDYETRYKILENKFYNDGAEIGEDIIAYLAENIRTNV 339


>gi|19115118|ref|NP_594206.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe 972h-]
 gi|74625010|sp|Q9P3U2|YKX4_SCHPO RecName: Full=Uncharacterized AAA domain-containing protein C328.04
 gi|8894855|emb|CAB95999.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe]
          Length = 741

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +SRS  FS  A SL S
Sbjct: 491 PARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTS 530


>gi|301154665|emb|CBW14127.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus
           parainfluenzae T3T1]
          Length = 231

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 6/140 (4%)

Query: 105 IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCS 160
           ++ ++ V L+D+  +  N   +  LF + N I     +LL+ +A   P +  V LPDL S
Sbjct: 91  LEQQELVCLDDLQAVIGNSEWEIALFDLFNCIKANGKTLLVVSAEQSPTALPVKLPDLAS 150

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           RLK     ++ +P  D  +  ++K  A  R I +    A +I  R++R +   ++ + ++
Sbjct: 151 RLKWGESYQL-IPLSDEQKLAVLKQNAHQRGIMLSDDTANFIFTRLDRDMATLKEALVQL 209

Query: 220 DNLALSRGMGITRSLAAEVL 239
           D  +L     +T      +L
Sbjct: 210 DKASLQAKRNLTIPFVKSIL 229


>gi|256820765|ref|YP_003142044.1| chromosomal replication initiation protein [Capnocytophaga ochracea
           DSM 7271]
 gi|256582348|gb|ACU93483.1| chromosomal replication initiator protein DnaA [Capnocytophaga
           ochracea DSM 7271]
          Length = 473

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 14/160 (8%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCL-ANIWSDKSRST--RFSNIAKSLDSILIDTRKPVL 112
           +D    +P + V+ V      +  + A+   DK ++T   F +  + +D +++D      
Sbjct: 188 VDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLNDFIHFYQLIDVLIVD------ 241

Query: 113 LEDIDLLDFN-DTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             DI  L     TQ   FHI N +HQ    +++T+   PV        L SR K     +
Sbjct: 242 --DIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQRLLSRFKWGLSAE 299

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           +  PD +   K++   F +    I + + AY+ + +  ++
Sbjct: 300 LQTPDYETRYKILENKFYNDGAEIGEDIIAYLAENIRTNV 339


>gi|150019914|ref|YP_001305268.1| chromosomal replication initiator protein DnaA [Thermosipho
           melanesiensis BI429]
 gi|166215366|sp|A6LIY2|DNAA_THEM4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|149792435|gb|ABR29883.1| chromosomal replication initiator protein DnaA [Thermosipho
           melanesiensis BI429]
          Length = 437

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 38/78 (48%)

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
           T+LFH  N+IH+    +++ +   P         + SR +   +VKI  P  + L K+  
Sbjct: 215 TELFHTFNTIHEAGKQIIICSDRTPQELKDFHSRMISRFQMGLLVKIEKPSSEDLFKIGK 274

Query: 184 KMFADRQIFIDKKLAAYI 201
           K+   + + ID ++  YI
Sbjct: 275 KISEMKNVEIDDEIIKYI 292


>gi|153808748|ref|ZP_01961416.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185]
 gi|149128574|gb|EDM19792.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185]
          Length = 470

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 23/130 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSL------DSILIDTRKPVL--LE 114
           + L G SG GK+ LAN    K +      R   ++  L      DS+  +T    +   +
Sbjct: 169 LFLYGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228

Query: 115 DIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
            ID+L  +D Q            FHI N +HQ    L++T+   PV        L +R K
Sbjct: 229 TIDVLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFK 288

Query: 164 AATVVKISLP 173
              V ++  P
Sbjct: 289 WGMVAELEKP 298


>gi|53794027|gb|AAU93604.1| cytoplasmic dynein heavy chain 2.1 [Leishmania mexicana]
          Length = 4241

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 22   KNKEEQLFFSFPRCLGISRDDLLVHSAI-----EQAVRLIDSW--PSWPS--RVVILVGP 72
            + +++ +   F     +S DDL  H  +     ++A+ ++ +W  P+ P   R  ILVGP
Sbjct: 2201 EERQDYVALEFVPAANLSIDDLYRHPMVSTVECQRALEVMRAWTKPTSPGVYRPFILVGP 2260

Query: 73   SGSGKSCLANIWSDKSRSTRFSNI 96
             G GK+ L N     + STR ++I
Sbjct: 2261 EGCGKTMLLNNLFMSTTSTRVASI 2284


>gi|220904598|ref|YP_002479910.1| ABC transporter-like protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868897|gb|ACL49232.1| ABC transporter related [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 571

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 63  PSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNI-AKSLDSILIDTRKPVLLEDID 117
           P  +V LVGPSGSGKS L    A +W  K    R  N+  + +D   +     ++L+D+ 
Sbjct: 357 PGSMVALVGPSGSGKSTLAALIARLWDVKEGVVRIGNVDVRDIDEPTLHRTVSMVLQDVF 416

Query: 118 LL 119
           L 
Sbjct: 417 LF 418


>gi|322495227|emb|CBZ30531.1| putative dynein heavy chain [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 4241

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 22   KNKEEQLFFSFPRCLGISRDDLLVHSAI-----EQAVRLIDSW--PSWPS--RVVILVGP 72
            + +++ +   F     +S DDL  H  +     ++A+ ++ +W  P+ P   R  ILVGP
Sbjct: 2201 EERQDYVALEFVPAANLSIDDLYRHPMVSTVECQRALEVMRAWTKPTSPGVYRPFILVGP 2260

Query: 73   SGSGKSCLANIWSDKSRSTRFSNI 96
             G GK+ L N     + STR ++I
Sbjct: 2261 EGCGKTMLLNNLFMSTTSTRVASI 2284


>gi|260174144|ref|ZP_05760556.1| chromosomal replication initiation protein [Bacteroides sp. D2]
 gi|315922409|ref|ZP_07918649.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696284|gb|EFS33119.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 470

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 23/130 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSL------DSILIDTRKPVL--LE 114
           + L G SG GK+ LAN    K +      R   ++  L      DS+  +T    +   +
Sbjct: 169 LFLYGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228

Query: 115 DIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
            ID+L  +D Q            FHI N +HQ    L++T+   PV        L +R K
Sbjct: 229 TIDVLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFK 288

Query: 164 AATVVKISLP 173
              V ++  P
Sbjct: 289 WGMVAELEKP 298


>gi|53715109|ref|YP_101101.1| chromosomal replication initiation protein [Bacteroides fragilis
           YCH46]
 gi|60683067|ref|YP_213211.1| chromosomal replication initiation protein [Bacteroides fragilis
           NCTC 9343]
 gi|265766960|ref|ZP_06094789.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_16]
 gi|61212532|sp|Q64PL4|DNAA_BACFR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|81313879|sp|Q5L9D0|DNAA_BACFN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|52217974|dbj|BAD50567.1| chromosomal replication initiator protein DnaA [Bacteroides
           fragilis YCH46]
 gi|60494501|emb|CAH09298.1| putative chromosomal replication initiator protein [Bacteroides
           fragilis NCTC 9343]
 gi|263253337|gb|EEZ24813.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_16]
 gi|301164582|emb|CBW24141.1| putative chromosomal replication initiator protein [Bacteroides
           fragilis 638R]
          Length = 476

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 81/208 (38%), Gaps = 33/208 (15%)

Query: 67  VILVGPSGSGKSCLAN--------IWSDK--------------------SRSTRFSNIAK 98
           + L G SG GK+ LAN        ++ DK                    + +  F N  +
Sbjct: 169 LFLHGASGVGKTHLANAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           ++D ++ID      +++   +       FHI N +HQ    L++T+   PV        L
Sbjct: 229 TIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERL 283

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            +R K   V ++  P  +  + ++        +    ++  YI + +  S+   E +V  
Sbjct: 284 LTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGIVIS 343

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQCD 246
           +   +      I   LA  ++++  +C+
Sbjct: 344 IMAHSTIYNKEIDLDLAQRIVRKVVRCE 371


>gi|322707976|gb|EFY99553.1| AAA family ATPase [Metarhizium anisopliae ARSEF 23]
          Length = 809

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 553 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 592


>gi|289811495|ref|ZP_06542124.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 153

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 126 LFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183
           +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ + +
Sbjct: 37  IFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 96

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +    R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 97  RARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 152


>gi|116179646|ref|XP_001219672.1| hypothetical protein CHGG_00451 [Chaetomium globosum CBS 148.51]
 gi|88184748|gb|EAQ92216.1| hypothetical protein CHGG_00451 [Chaetomium globosum CBS 148.51]
          Length = 834

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 582 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 621


>gi|226293403|gb|EEH48823.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 854

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 598 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 637


>gi|18976440|ref|NP_577797.1| cobalt transport ATP-binding protein [Pyrococcus furiosus DSM 3638]
 gi|56748835|sp|Q8U4L3|Y068_PYRFU RecName: Full=Putative ABC transporter ATP-binding protein PF0068
 gi|18891974|gb|AAL80192.1| cobalt transport ATP-binding protein [Pyrococcus furiosus DSM 3638]
          Length = 260

 Score = 37.0 bits (84), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 41/193 (21%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           S+   ++ +VGP+GSGK+ L                 K  + ++   +  VL++ I+  +
Sbjct: 24  SFDEGILAVVGPNGSGKTTL----------------VKMFNGLIKPKKGDVLVDGINTKE 67

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTF------PVSWGVCLPDLCSRLKAATVVKISLPD 174
            +  QL  I+  + Q   ++      F      P + G+   ++  R+K A         
Sbjct: 68  ASTAQLSRIVGYVFQNPDAMFFEETVFDEVAFGPRNLGLSEEEVKERVKWA--------- 118

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK----LVDKMDNLALSRGMGI 230
              LE V +K F D+  F   KL+    QR+  + + A      ++D+       RG+G 
Sbjct: 119 ---LEAVGLKGFEDKNPF---KLSGGEKQRLAIACILAMNPKYLVLDEPTTGLDERGVGA 172

Query: 231 TRSLAAEVLKETQ 243
            +++  E+ KE +
Sbjct: 173 LKNIIEELRKEGK 185


>gi|225684013|gb|EEH22297.1| katanin p60 ATPase-containing subunit [Paracoccidioides
           brasiliensis Pb03]
          Length = 854

 Score = 37.0 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 598 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 637


>gi|33151946|ref|NP_873299.1| DNA replication initiation factor [Haemophilus ducreyi 35000HP]
 gi|33148168|gb|AAP95688.1| conserved probable chromosomal replication initiator protein
           [Haemophilus ducreyi 35000HP]
          Length = 236

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 52/104 (50%)

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           + + LL++A   P    + LPDL SRL    V ++    DD    ++ +    + I + +
Sbjct: 131 HKTLLLISANCSPHQLKIKLPDLKSRLTWGEVYQLYDLTDDQKIVILQRKAYQKGIELSE 190

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           ++A ++++R++R L      +DK+D  +L     +T     E++
Sbjct: 191 EVANFLLKRLDRDLPVLLAELDKLDRASLQAKRKLTMPFVKEII 234


>gi|258568020|ref|XP_002584754.1| spastin [Uncinocarpus reesii 1704]
 gi|237906200|gb|EEP80601.1| spastin [Uncinocarpus reesii 1704]
          Length = 943

 Score = 37.0 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 688 PTRGMLLFGPPGTGKTMLARAVATESKSTFFSISATSLTS 727


>gi|254457518|ref|ZP_05070946.1| chromosomal replication initiator protein DnaA [Campylobacterales
           bacterium GD 1]
 gi|207086310|gb|EDZ63594.1| chromosomal replication initiator protein DnaA [Campylobacterales
           bacterium GD 1]
          Length = 435

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 24/228 (10%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCL----ANIWSDKSRSTRF 93
           D+ +V  + + A   + S    P  V   + + G  G GK+ L     N++ ++ +S  +
Sbjct: 107 DNFMVGGSNQFAYAAVKSVSESPGEVYNPLFIYGGVGLGKTHLMQSAGNVFQNQGKSVIY 166

Query: 94  SNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFHIINSIHQY 136
           +++ + L+  +   R                +L++DI  L   +    + FH   ++   
Sbjct: 167 TSVEQFLNDFIRHVRNKTMPSFQEKYRKCDVLLIDDIQFLSNKEGIQEEFFHTFEALKGS 226

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              +++TA   P   G     L SR +   V  I  P+ +    +I K     ++ +   
Sbjct: 227 GKQIILTADKHPKKIGGLEKRLQSRFEWGLVADIQPPELETKIAIIKKKCEINKVKLSND 286

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +  YI   +E ++   E ++ K+   +    + I  +    VLK+  Q
Sbjct: 287 IINYIATVIESNVREIEGILSKLHAYSQLMHIDIDLAFTKNVLKDQLQ 334


>gi|160885204|ref|ZP_02066207.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483]
 gi|237714833|ref|ZP_04545314.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1]
 gi|237720012|ref|ZP_04550493.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           2_2_4]
 gi|262406895|ref|ZP_06083444.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_22]
 gi|293368855|ref|ZP_06615459.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus
           SD CMC 3f]
 gi|294643068|ref|ZP_06720907.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus
           SD CC 2a]
 gi|294807803|ref|ZP_06766593.1| chromosomal replication initiator protein DnaA [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298479865|ref|ZP_06998065.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22]
 gi|299147890|ref|ZP_07040953.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           3_1_23]
 gi|156109554|gb|EDO11299.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483]
 gi|229445158|gb|EEO50949.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1]
 gi|229450564|gb|EEO56355.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           2_2_4]
 gi|262355598|gb|EEZ04689.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_22]
 gi|292636160|gb|EFF54648.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus
           SD CMC 3f]
 gi|292641587|gb|EFF59766.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus
           SD CC 2a]
 gi|294445000|gb|EFG13677.1| chromosomal replication initiator protein DnaA [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295084766|emb|CBK66289.1| chromosomal replication initiator protein DnaA [Bacteroides
           xylanisolvens XB1A]
 gi|298274255|gb|EFI15816.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22]
 gi|298514073|gb|EFI37959.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           3_1_23]
          Length = 470

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 23/130 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSL------DSILIDTRKPVL--LE 114
           + L G SG GK+ LAN    K +      R   ++  L      DS+  +T    +   +
Sbjct: 169 LFLYGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228

Query: 115 DIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
            ID+L  +D Q            FHI N +HQ    L++T+   PV        L +R K
Sbjct: 229 TIDVLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFK 288

Query: 164 AATVVKISLP 173
              V ++  P
Sbjct: 289 WGMVAELEKP 298


>gi|268610504|ref|ZP_06144231.1| chromosomal replication initiation protein [Ruminococcus
           flavefaciens FD-1]
          Length = 457

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 82/199 (41%), Gaps = 24/199 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------------STRFS-------NIAKSLDSILIDT 107
           + + GPSG GK+ L    +++ R            S  F        N   ++D      
Sbjct: 152 LFIYGPSGMGKTHLITAIANEVRKNHPDFNIVYVTSEAFGGELINALNNTGNIDDFHAKY 211

Query: 108 RKP--VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           R    +L++DI      +    + FH   ++HQ    +++T+   P         L +R 
Sbjct: 212 RNADILLIDDIQFFSGKERMQEEFFHTFYTLHQEGRQIVITSDKPPKELLTLEERLRTRF 271

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   +  IS PD +    +I +     ++ +  ++A ++  R++ ++   E  V ++  L
Sbjct: 272 EGGLIADISAPDYETRLAIINRKSELLELKMPSEVAEFMANRLKSNIRQLEGAVVRLKAL 331

Query: 223 ALSRGMGITRSLAAEVLKE 241
               G  IT S+A  V+++
Sbjct: 332 NHFAGSPITISMAQSVIRD 350


>gi|255722928|ref|XP_002546398.1| hypothetical protein CTRG_05876 [Candida tropicalis MYA-3404]
 gi|240130915|gb|EER30477.1| hypothetical protein CTRG_05876 [Candida tropicalis MYA-3404]
          Length = 754

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL
Sbjct: 508 PTRGMLLFGPPGTGKTMLARAVATESKSTFFSVSAASL 545


>gi|170767200|ref|ZP_02901653.1| DnaA regulatory inactivator Hda [Escherichia albertii TW07627]
 gi|170123534|gb|EDS92465.1| DnaA regulatory inactivator Hda [Escherichia albertii TW07627]
          Length = 225

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 126 LFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183
           +F + N I    ++ LL+T    P    + LPDL SRL    + K+  L D+D L+ + +
Sbjct: 109 IFDLYNRILESGNTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 168

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 169 RARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 224


>gi|126664804|ref|ZP_01735788.1| putative transposase [Marinobacter sp. ELB17]
 gi|126664928|ref|ZP_01735911.1| putative transposase [Marinobacter sp. ELB17]
 gi|126665885|ref|ZP_01736866.1| putative transposase [Marinobacter sp. ELB17]
 gi|126667106|ref|ZP_01738081.1| putative transposase [Marinobacter sp. ELB17]
 gi|126667676|ref|ZP_01738644.1| putative transposase [Marinobacter sp. ELB17]
 gi|126668381|ref|ZP_01739339.1| putative transposase [Marinobacter sp. ELB17]
 gi|126668496|ref|ZP_01739451.1| putative transposase [Marinobacter sp. ELB17]
 gi|126668544|ref|ZP_01739499.1| putative transposase [Marinobacter sp. ELB17]
 gi|126668669|ref|ZP_01739620.1| putative transposase [Marinobacter sp. ELB17]
 gi|126669137|ref|ZP_01740065.1| putative transposase [Marinobacter sp. ELB17]
 gi|126626407|gb|EAZ97076.1| putative transposase [Marinobacter sp. ELB17]
 gi|126626847|gb|EAZ97493.1| putative transposase [Marinobacter sp. ELB17]
 gi|126627007|gb|EAZ97649.1| putative transposase [Marinobacter sp. ELB17]
 gi|126627055|gb|EAZ97697.1| putative transposase [Marinobacter sp. ELB17]
 gi|126627197|gb|EAZ97836.1| putative transposase [Marinobacter sp. ELB17]
 gi|126627779|gb|EAZ98408.1| putative transposase [Marinobacter sp. ELB17]
 gi|126628512|gb|EAZ99134.1| putative transposase [Marinobacter sp. ELB17]
 gi|126629819|gb|EBA00436.1| putative transposase [Marinobacter sp. ELB17]
 gi|126630298|gb|EBA00913.1| putative transposase [Marinobacter sp. ELB17]
 gi|126631130|gb|EBA01744.1| putative transposase [Marinobacter sp. ELB17]
          Length = 251

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 24/113 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDK-----SRSTRFSNIA---------KSLDSILIDTR---- 108
           V+L+GPSG+GK+ +AN    +      R   F  IA         + LD +   TR    
Sbjct: 102 VLLIGPSGTGKTHIANALGHQLTEQGVRCKLFPAIALVQHLQQAKRDLDLMTAMTRLDKY 161

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVS-WGVCLPD 157
           + V+++DI  +   D +   LF  I   H+Y+S  L+     P S W    PD
Sbjct: 162 RVVIIDDIGYVKKTDAETQVLFEFI--AHRYESGSLIVTANQPFSEWDQIFPD 212


>gi|78357910|ref|YP_389359.1| type I restriction-modification system, S subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220315|gb|ABB39664.1| type I restriction-modification system, S subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 448

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
           F   + FH +     Y   +L++    P+     +PDL  R+  +    I  PD  F +K
Sbjct: 294 FISEETFHALGCTEVYGGDVLVSRLNNPIGRACMVPDLGVRVVTSVDNVIFRPDSKFNKK 353

Query: 181 VIVKMFADRQIFID-KKLA-AYIVQRMERSLV 210
            IV +F+  + F     LA    +QR+ R L+
Sbjct: 354 FIVYLFSSEEYFKHTSNLARGATMQRISRGLL 385


>gi|332877991|ref|ZP_08445721.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683953|gb|EGJ56820.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 468

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANI-------------------------WSDKSRSTR---FSNIAK 98
           + + G SG GK+ L N                          ++D  R      F N  +
Sbjct: 168 LFIYGASGVGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFINFYQ 227

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           ++D ++ID      +++   L       FHI N +HQ    L++T+   P +       L
Sbjct: 228 TIDVLIIDD-----VQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERL 282

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            +R K   + ++  P+      ++        + I +++  ++ + +  S+   E +V+ 
Sbjct: 283 LTRFKWGLLAELEKPNQQLRHDILENKIRQDGLKIPEEVIDFVSENVNDSVRELEGIVNS 342

Query: 219 MDNLALSRGMGITRSLAAEVLK 240
           +   ++     I   LA ++LK
Sbjct: 343 LMAYSVVWNRDIDLPLAEQILK 364


>gi|27383099|ref|NP_774628.1| ATP-binding protein [Bradyrhizobium japonicum USDA 110]
 gi|27356273|dbj|BAC53253.1| bll7988 [Bradyrhizobium japonicum USDA 110]
          Length = 235

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 14/84 (16%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT- 124
           VV+L+GPSGSGK+ L NI     R T      + +D  L D      LED +L  +    
Sbjct: 37  VVVLLGPSGSGKTTLLNIMGGLDRPTSGRLFFRDID--LTD------LEDRELTKYRRDH 88

Query: 125 -----QLFHIINSIHQYDSSLLMT 143
                Q ++++ S+  Y++  L+T
Sbjct: 89  VGFVFQFYNLVPSLTAYENVALVT 112


>gi|299537005|ref|ZP_07050310.1| ABC transporter ATP-binding protein [Lysinibacillus fusiformis ZC1]
 gi|298727585|gb|EFI68155.1| ABC transporter ATP-binding protein [Lysinibacillus fusiformis ZC1]
          Length = 253

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 22/106 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+   N  S   R T           I I+   P  L D DL  F  T+L
Sbjct: 37  VAVMGPSGSGKTTFLNSVSTIDRPTA--------GDIFINNHNPYALNDEDLAKFRRTEL 88

Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
              F   N +H           T  V   + LP     L A+ +++
Sbjct: 89  GFVFQDFNLVH-----------TLTVKENILLPLTLDSLPASKMLQ 123


>gi|295664729|ref|XP_002792916.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01]
 gi|226278437|gb|EEH34003.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01]
          Length = 810

 Score = 36.6 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 604 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 643


>gi|119025019|ref|YP_908864.1| chromosomal replication initiation protein [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154486346|ref|ZP_02027753.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis
           L2-32]
 gi|118764603|dbj|BAF38782.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084209|gb|EDN83254.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis
           L2-32]
          Length = 499

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 17/169 (10%)

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135
            LA+      +   F+   + +D +LID        DI  L   D    Q FH  N++HQ
Sbjct: 236 ALADTNQSSGQIKEFNRRYREVDVLLID--------DIQFLSGKDATLEQFFHTFNTLHQ 287

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFAD-RQIF 192
            +  +++ +   P         L SR ++   V +  PD   LE    I++M A      
Sbjct: 288 ANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPD---LETRIAILRMIATMNGSN 344

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           I   +   I +R   ++   E  ++++  +A      +T++LA + L++
Sbjct: 345 IPNDVFNLIAERFTENIRELEGALNRVTAMASLSNQPVTKALAEQTLQD 393


>gi|294782086|ref|ZP_06747412.1| ATP-binding protein (contains P-loop) [Fusobacterium sp. 1_1_41FAA]
 gi|294480727|gb|EFG28502.1| ATP-binding protein (contains P-loop) [Fusobacterium sp. 1_1_41FAA]
          Length = 290

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            ++I+ G SG+GK+   NI  D +  T   N+   L+  L+DT    L   ID+  F +T
Sbjct: 5   HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63

Query: 125 Q-LFHIINSI 133
           +  F  IN I
Sbjct: 64  KDFFKFINYI 73


>gi|295838628|ref|ZP_06825561.1| uridine kinase [Streptomyces sp. SPB74]
 gi|295827104|gb|EFG65242.1| uridine kinase [Streptomyces sp. SPB74]
          Length = 232

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 20/27 (74%)

Query: 55 LIDSWPSWPSRVVILVGPSGSGKSCLA 81
          L+   P+ P RVV+L GPSGSGKS LA
Sbjct: 8  LVSPHPAVPVRVVLLAGPSGSGKSSLA 34


>gi|154290380|ref|XP_001545786.1| AAA family ATPase [Botryotinia fuckeliana B05.10]
 gi|150847766|gb|EDN22959.1| AAA family ATPase [Botryotinia fuckeliana B05.10]
          Length = 820

 Score = 36.6 bits (83), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +
Sbjct: 565 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKFL 607


>gi|46136671|ref|XP_390027.1| hypothetical protein FG09851.1 [Gibberella zeae PH-1]
          Length = 795

 Score = 36.6 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 539 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 578


>gi|330995967|ref|ZP_08319861.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT
           11841]
 gi|329573964|gb|EGG55542.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT
           11841]
          Length = 468

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANI-------------------------WSDKSRSTR---FSNIAK 98
           + + G SG GK+ L N                          ++D  R      F N  +
Sbjct: 168 LFIYGASGVGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFINFYQ 227

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           ++D ++ID      +++   L       FHI N +HQ    L++T+   P +       L
Sbjct: 228 TIDVLIIDD-----VQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERL 282

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            +R K   + ++  P+      ++        + I +++  ++ + +  S+   E +V+ 
Sbjct: 283 LTRFKWGLLAELEKPNQQLRHDILENKIRQDGLKIPEEVIDFVSENVNDSVRELEGIVNS 342

Query: 219 MDNLALSRGMGITRSLAAEVLK 240
           +   ++     I   LA ++LK
Sbjct: 343 LMAYSVVWNRDIDLPLAEQILK 364


>gi|189091796|ref|XP_001929731.1| hypothetical protein [Podospora anserina S mat+]
 gi|188219251|emb|CAP49231.1| unnamed protein product [Podospora anserina S mat+]
          Length = 830

 Score = 36.6 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 582 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 621


>gi|23465223|ref|NP_695826.1| chromosomal replication initiation protein [Bifidobacterium longum
           NCC2705]
 gi|189440298|ref|YP_001955379.1| chromosomal replication initiation protein [Bifidobacterium longum
           DJO10A]
 gi|227547513|ref|ZP_03977562.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239622843|ref|ZP_04665874.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|312133632|ref|YP_004000971.1| dnaa [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482359|ref|ZP_07941379.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322688192|ref|YP_004207926.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis 157F]
 gi|322690194|ref|YP_004219764.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|38257643|sp|Q8G6K0|DNAA_BIFLO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735779|sp|B3DP22|DNAA_BIFLD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|23325851|gb|AAN24462.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum NCC2705]
 gi|189428733|gb|ACD98881.1| ATPase for DNA replication initiation [Bifidobacterium longum
           DJO10A]
 gi|227212028|gb|EEI79924.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239514840|gb|EEQ54707.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|311772890|gb|ADQ02378.1| DnaA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916239|gb|EFV37641.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320455050|dbj|BAJ65672.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320459528|dbj|BAJ70148.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 500

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 17/169 (10%)

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135
            L N    + +   F+   + +D +LID        DI  L   +    Q FH  N++HQ
Sbjct: 238 ALQNPNQSQGQIAEFNRRYRQVDVLLID--------DIQFLGGKEATLDQFFHTFNALHQ 289

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFADRQIF- 192
            +  +++ +   P +       L SR ++   V +  PD   LE    I++M A      
Sbjct: 290 ANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPD---LETRIAILRMIASMNGSK 346

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           I   +   I +R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 347 IPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395


>gi|302916237|ref|XP_003051929.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732868|gb|EEU46216.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 808

 Score = 36.6 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 552 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 591


>gi|305663873|ref|YP_003860161.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378442|gb|ADM28281.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
          Length = 475

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 32/195 (16%)

Query: 62  WPSRVVILVGPSGSGKSCLAN------------IWSDKSRSTRFSNIAKSLDSILIDTRK 109
           +  R ++L+GP G GKS  A             +     RS  +    K+L++I    +K
Sbjct: 241 YAPRGILLIGPPGVGKSVTAEAIAQALTKGIVRLTPSTYRSMWYGMTEKTLNNIFASLKK 300

Query: 110 P----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFP----VSWGVCLPDLCSR 161
                VL++D D L     Q F+ I+  +  + ++ +     P    V     +P++  +
Sbjct: 301 RKDIVVLIDDADFL----VQRFNAIHEAYIAEVNIWLNILQDPLRPLVIMTTNVPEIIDQ 356

Query: 162 L-----KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
                 +   V+ +  PD    +K+I ++     I I+ ++   IVQR      F    +
Sbjct: 357 ALIRPGRLDVVIFMGYPDKYMRKKIIKRICESYNITINDQIIEEIVQRTRW---FNAAEL 413

Query: 217 DKMDNLALSRGMGIT 231
           D +  +A S+G GI 
Sbjct: 414 DSLIRMAASKGHGIV 428


>gi|228942013|ref|ZP_04104556.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228817682|gb|EEM63764.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 139

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 42  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 93

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 94  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 126


>gi|332709094|ref|ZP_08429063.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula
           3L]
 gi|332352145|gb|EGJ31716.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula
           3L]
          Length = 460

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 107 TRKPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           T + +L++DI  ++   +   + FH  N++H+    +++ +   P         LCSR  
Sbjct: 215 TAEVLLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQINSLEERLCSRFS 274

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
              +  I  PD +    ++ K   D  I +   +  YI 
Sbjct: 275 MGLIADIQPPDLETRMAILQKKAEDENIRLPHDVVEYIA 313


>gi|302519442|ref|ZP_07271784.1| ATP-binding protein [Streptomyces sp. SPB78]
 gi|333026726|ref|ZP_08454790.1| putative ATP-binding protein [Streptomyces sp. Tu6071]
 gi|302428337|gb|EFL00153.1| ATP-binding protein [Streptomyces sp. SPB78]
 gi|332746578|gb|EGJ77019.1| putative ATP-binding protein [Streptomyces sp. Tu6071]
          Length = 232

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 20/27 (74%)

Query: 55 LIDSWPSWPSRVVILVGPSGSGKSCLA 81
          L+   P+ P RVV+L GPSGSGKS LA
Sbjct: 8  LVSPHPAVPVRVVLLAGPSGSGKSSLA 34


>gi|27803008|emb|CAD60711.1| unnamed protein product [Podospora anserina]
          Length = 820

 Score = 36.6 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 572 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 611


>gi|127512766|ref|YP_001093963.1| DNA replication initiation factor [Shewanella loihica PV-4]
 gi|126638061|gb|ABO23704.1| regulatory inactivation of DnaA Hda protein [Shewanella loihica
           PV-4]
          Length = 236

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/190 (19%), Positives = 87/190 (45%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS------NIAKSLDSILIDTRKP---VLLE 114
           ++ V L GP  +G++ L +    ++     S       I  S+ + L++  +    V ++
Sbjct: 46  NKAVYLWGPVKAGRTHLMHATCARANELNRSSFYLPLGIHASISTELLEGLEQLDLVCID 105

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+D +  +   +  LF + N + ++   +L+++A       G  LPDL SR++     ++
Sbjct: 106 DVDAIAGHPLWEEALFDLYNRVAEHKRCALVVSASATASDAGFALPDLVSRMQWGLTYQL 165

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+     + +  A R + + + +  +++ R+ R L     ++D++D  +L     +
Sbjct: 166 QPMADEEKLAALQRRAAMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASLVHQRKL 225

Query: 231 TRSLAAEVLK 240
           T     E+L+
Sbjct: 226 TIPFVKEMLR 235


>gi|303311035|ref|XP_003065529.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105191|gb|EER23384.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320039331|gb|EFW21265.1| vacuolar sorting protein 4b [Coccidioides posadasii str. Silveira]
          Length = 772

 Score = 36.6 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 517 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISATSLTS 556


>gi|186477238|ref|YP_001858708.1| DnaA regulatory inactivator Hda [Burkholderia phymatum STM815]
 gi|184193697|gb|ACC71662.1| DnaA regulatory inactivator Hda [Burkholderia phymatum STM815]
          Length = 257

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 8/176 (4%)

Query: 65  RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID----L 118
           R   + G +GSG++ L  A +        R++    SL +   D    V L  +D    L
Sbjct: 47  RTFYVWGETGSGRTHLLEALVHEAPPGHARYAGPQSSLAAFTFD--PAVTLYAVDDCDRL 104

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
                  LF+++N +  + +S L+ A            DL +R+    V  ++   D+  
Sbjct: 105 SGAQQIALFNLVNEVRAHPTSALVVAGNAAPMGLEVREDLRTRMGWGLVFHVAPLADEGK 164

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
             V+ +   +R I +   + AY++    R +     L+D +D  +L +   +T  L
Sbjct: 165 AAVLKRAARERGINLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220


>gi|262068096|ref|ZP_06027708.1| ATP-binding protein [Fusobacterium periodonticum ATCC 33693]
 gi|291378182|gb|EFE85700.1| ATP-binding protein [Fusobacterium periodonticum ATCC 33693]
          Length = 290

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            ++I+ G SG+GK+   NI  D +  T   N+   L+  L+DT    L   ID+  F +T
Sbjct: 5   HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63

Query: 125 Q-LFHIINSIHQ 135
           +  F  IN I +
Sbjct: 64  KDFFKFINFIKE 75


>gi|152971350|ref|YP_001336459.1| DNA replication initiation factor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206580464|ref|YP_002237176.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae 342]
 gi|238895946|ref|YP_002920682.1| DNA replication initiation factor [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042106|ref|ZP_06015281.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934116|ref|YP_003438175.1| DnaA regulatory inactivator Hda [Klebsiella variicola At-22]
 gi|290508321|ref|ZP_06547692.1| DnaA regulatory inactivator Hda [Klebsiella sp. 1_1_55]
 gi|269969359|sp|B5XNQ6|HDA_KLEP3 RecName: Full=DnaA-homolog protein hda
 gi|269969360|sp|A6TCA8|HDA_KLEP7 RecName: Full=DnaA-homolog protein hda
 gi|150956199|gb|ABR78229.1| DNA replication initiation factor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206569522|gb|ACI11298.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae 342]
 gi|238548264|dbj|BAH64615.1| DNA replication initiation factor [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259040536|gb|EEW41632.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288888845|gb|ADC57163.1| DnaA regulatory inactivator Hda [Klebsiella variicola At-22]
 gi|289777715|gb|EFD85712.1| DnaA regulatory inactivator Hda [Klebsiella sp. 1_1_55]
          Length = 225

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F++ N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 106 EMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 165

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 166 LQLRARL-RGFEMPEDVCRFLLKRLDREMRSLFMTLDQLDHASITAQRKLTIPFVKEILK 224


>gi|332141572|ref|YP_004427310.1| Chromosomal replication initiator, DnaA like protein to DnaA
           protein Hda [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551594|gb|AEA98312.1| Chromosomal replication initiator, DnaA like protein to DnaA
           protein Hda [Alteromonas macleodii str. 'Deep ecotype']
          Length = 245

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 13/168 (7%)

Query: 66  VVILVGPSGSGKSCL----ANIWSDKSRSTRFSNI----AKSLDSI-LIDTRKPVLLEDI 116
           +V L+G S  GKS L     +  + KS S  + N+    A SLD    ++    + L++I
Sbjct: 56  LVTLLGNSAIGKSHLLFATCHQLAGKSVSHLYLNLNDYQAWSLDIFEGLENLSLIALDNI 115

Query: 117 DLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
             +  N   +  LF + N + +   +L++ T+   P +    LPDL SRL    +  ++ 
Sbjct: 116 HAIAGNVQWEEALFDLFNRVIETKRALIICTSHLGPSNPAFTLPDLRSRLAWGVIYHVNQ 175

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
            DD   E+ +     +R + +  +   +++   ER L     L+ ++D
Sbjct: 176 LDDGGREEAVRLRAEERGLTLSNQALQFLLHHSERDLKSLMSLLARLD 223


>gi|313902784|ref|ZP_07836181.1| chromosomal replication initiator protein DnaA [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466904|gb|EFR62421.1| chromosomal replication initiator protein DnaA [Thermaerobacter
           subterraneus DSM 13965]
          Length = 460

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 71/157 (45%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTA 144
            ++  F N  +++D +L+D        DI  L   ++   + FH  N++H+ +  +++++
Sbjct: 208 GKTLEFRNRYRNVDVLLVD--------DIQFLAGKESTQEEFFHTFNALHEANRQIVISS 259

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P         L SR +   +  I  PD +    ++ K     ++ +   + A+I +R
Sbjct: 260 DRPPKEIPTLEERLRSRFEWGLISDIQPPDFETRVAILRKKAQLEKLRVPDDVIAFIAER 319

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   A      I   LAAEVLK+
Sbjct: 320 IDTNIRELEGALIRLVAFASLTNHEIDLDLAAEVLKD 356


>gi|283786112|ref|YP_003365977.1| DnaA-homolog protein [Citrobacter rodentium ICC168]
 gi|282949566|emb|CBG89184.1| DnaA-homolog protein [Citrobacter rodentium ICC168]
          Length = 248

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 129 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 188

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 189 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 247


>gi|160872450|ref|ZP_02062582.1| DnaA regulatory inactivator Hda [Rickettsiella grylli]
 gi|159121249|gb|EDP46587.1| DnaA regulatory inactivator Hda [Rickettsiella grylli]
          Length = 231

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFNDTQ--- 125
           G  G+G + L       ++   FS     L ++  +    +L  LE +D++  +D +   
Sbjct: 48  GHPGAGCTHLLQACCHTAQQYGFSVAYLPLSTLKKNNSSEILRGLESVDMVCIDDLESVV 107

Query: 126 --------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
                   LFH  N + +    LL+ A+  P      LPDL SRL +  + ++
Sbjct: 108 NESSWEESLFHFYNRLQEQSRYLLIAAKHNPHQLNFSLPDLISRLSSGILFQV 160


>gi|319940693|ref|ZP_08015035.1| chromosomal replication initiator protein dnaA [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805844|gb|EFW02611.1| chromosomal replication initiator protein dnaA [Sutterella
           wadsworthensis 3_1_45B]
          Length = 454

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 8/153 (5%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           +F    +SLD +LID      ++ +     +  Q F    ++  ++  L++T+ T+    
Sbjct: 205 KFDERYRSLDLLLIDD-----VQSLSGAKGSQGQFFRAFEALVPHNKQLVITSDTYTRGL 259

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RS 208
               P L SRL     V I  P+ +    +++       + +  ++AAYI +R++   R 
Sbjct: 260 KDIEPRLISRLSQGLSVAIEPPEFEMRTAILLNKAKTMGVDLPDEVAAYIAKRLKSNVRE 319

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           L  A + V        +    IT  +A  VL+E
Sbjct: 320 LEGALQQVVAYQQFQATSSREITIDIAKRVLRE 352


>gi|296453188|ref|YP_003660331.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296182619|gb|ADG99500.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 500

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 17/169 (10%)

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135
            L N    + +   F+   + +D +LID        DI  L   +    Q FH  N++HQ
Sbjct: 238 ALQNPNQSQGQIAEFNRRYRQVDVLLID--------DIQFLGGKEATLDQFFHTFNALHQ 289

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFADRQIF- 192
            +  +++ +   P +       L SR ++   V +  PD   LE    I++M A      
Sbjct: 290 ANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPD---LETRIAILRMIASMNGSK 346

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           I   +   I +R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 347 IPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395


>gi|269217240|ref|ZP_06161094.1| macrolide export ATP-binding/permease protein MacB [Slackia exigua
           ATCC 700122]
 gi|269129377|gb|EEZ60462.1| macrolide export ATP-binding/permease protein MacB [Slackia exigua
           ATCC 700122]
          Length = 264

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 15/174 (8%)

Query: 8   YSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV 67
           +S   P  +  D P+N  EQ+         +      + +    A++ + S        +
Sbjct: 4   FSQTAPVARSGDGPRNGREQIVLDVRNVHRVYE----MKAGFTHALKGV-SLTVSKGEFL 58

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
            ++GPSGSGKS L N      R T  S   + LD   +D        D  L +   T+L 
Sbjct: 59  CIMGPSGSGKSTLMNTLGCLDRPTSGSYFLEGLDVSKLD--------DDGLAEIRSTRLG 110

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-ISLPDDDFLEK 180
            +  S +    + ++     P+ +  C P     L+A   +  +SLP++ F  K
Sbjct: 111 FVFQSFNLLPRATVLRNVMLPLIYSDC-PVSERTLRAVKALNAVSLPEEYFDHK 163


>gi|261203737|ref|XP_002629082.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis SLH14081]
 gi|239586867|gb|EEQ69510.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis SLH14081]
          Length = 812

 Score = 36.6 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S
Sbjct: 583 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 622


>gi|213690929|ref|YP_002321515.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|254777888|sp|B7GSF9|DNAA_BIFLS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|213522390|gb|ACJ51137.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|291517733|emb|CBK71349.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. longum F8]
 gi|320456975|dbj|BAJ67596.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 500

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 17/169 (10%)

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135
            L N    + +   F+   + +D +LID        DI  L   +    Q FH  N++HQ
Sbjct: 238 ALQNPNQSQGQIAEFNRRYRQVDVLLID--------DIQFLGGKEATLDQFFHTFNALHQ 289

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFADRQIF- 192
            +  +++ +   P +       L SR ++   V +  PD   LE    I++M A      
Sbjct: 290 ANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPD---LETRIAILRMIASMNGSK 346

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           I   +   I +R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 347 IPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395


>gi|237732473|ref|ZP_04562954.1| DNA replication initiation factor [Citrobacter sp. 30_2]
 gi|283832129|ref|ZP_06351870.1| DnaA regulatory inactivator Hda [Citrobacter youngae ATCC 29220]
 gi|226908012|gb|EEH93930.1| DNA replication initiation factor [Citrobacter sp. 30_2]
 gi|291071759|gb|EFE09868.1| DnaA regulatory inactivator Hda [Citrobacter youngae ATCC 29220]
          Length = 241

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 122 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 181

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 182 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240


>gi|161502351|ref|YP_001569463.1| DNA replication initiation factor [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189042483|sp|A9MHP3|HDA_SALAR RecName: Full=DnaA-homolog protein hda
 gi|160863698|gb|ABX20321.1| hypothetical protein SARI_00384 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 241

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 122 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 181

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 182 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240


>gi|16761414|ref|NP_457031.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765816|ref|NP_461431.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29140889|ref|NP_804231.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181063|ref|YP_217480.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167991801|ref|ZP_02572900.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232045|ref|ZP_02657103.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168243269|ref|ZP_02668201.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261467|ref|ZP_02683440.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168466758|ref|ZP_02700612.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168817751|ref|ZP_02829751.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446139|ref|YP_002041757.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449619|ref|YP_002046559.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472246|ref|ZP_03078230.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735099|ref|YP_002115562.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250088|ref|YP_002147449.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263709|ref|ZP_03163783.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198242062|ref|YP_002216565.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200388824|ref|ZP_03215436.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929434|ref|ZP_03220508.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353601|ref|YP_002227402.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857909|ref|YP_002244560.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213160889|ref|ZP_03346599.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425351|ref|ZP_03358101.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582544|ref|ZP_03364370.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213616332|ref|ZP_03372158.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647175|ref|ZP_03377228.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855522|ref|ZP_03383762.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224582970|ref|YP_002636768.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238913635|ref|ZP_04657472.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289829340|ref|ZP_06546952.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|57012732|sp|Q7CQ21|HDA_SALTY RecName: Full=DnaA-homolog protein hda
 gi|57012734|sp|Q8XEQ0|HDA_SALTI RecName: Full=DnaA-homolog protein hda
 gi|75481740|sp|Q57LL3|HDA_SALCH RecName: Full=DnaA-homolog protein hda
 gi|226740573|sp|B5F171|HDA_SALA4 RecName: Full=DnaA-homolog protein hda
 gi|226740574|sp|B5FQI8|HDA_SALDC RecName: Full=DnaA-homolog protein hda
 gi|226740575|sp|B5R558|HDA_SALEP RecName: Full=DnaA-homolog protein hda
 gi|226740576|sp|B5RCW8|HDA_SALG2 RecName: Full=DnaA-homolog protein hda
 gi|226740577|sp|B4TD71|HDA_SALHS RecName: Full=DnaA-homolog protein hda
 gi|226740578|sp|B4T0M5|HDA_SALNS RecName: Full=DnaA-homolog protein hda
 gi|226740580|sp|B4TR72|HDA_SALSV RecName: Full=DnaA-homolog protein hda
 gi|254800192|sp|C0PYR0|HDA_SALPC RecName: Full=DnaA-homolog protein hda
 gi|269969427|sp|A9N2Y3|HDA_SALPB RecName: Full=DnaA-homolog protein hda
 gi|25356046|pir||AF0818 conserved hypothetical protein STY2737 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421038|gb|AAL21390.1| putative ATPase involved in DNA replication initiation [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16503714|emb|CAD02698.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136514|gb|AAO68080.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62128696|gb|AAX66399.1| putative ATPase involved in DNA replication initiation [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|194404802|gb|ACF65024.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407923|gb|ACF68142.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458610|gb|EDX47449.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710601|gb|ACF89822.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630731|gb|EDX49323.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213791|gb|ACH51188.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241964|gb|EDY24584.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197936578|gb|ACH73911.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605922|gb|EDZ04467.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321153|gb|EDZ06353.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273382|emb|CAR38354.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205329842|gb|EDZ16606.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333601|gb|EDZ20365.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337580|gb|EDZ24344.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344978|gb|EDZ31742.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349619|gb|EDZ36250.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709712|emb|CAR34062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467497|gb|ACN45327.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247694|emb|CBG25521.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994607|gb|ACY89492.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159048|emb|CBW18561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913484|dbj|BAJ37458.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320086990|emb|CBY96760.1| Chromosomal replication initiator protein dnaA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322613765|gb|EFY10704.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619492|gb|EFY16368.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624997|gb|EFY21826.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629560|gb|EFY26336.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634010|gb|EFY30747.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635552|gb|EFY32263.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639900|gb|EFY36576.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644394|gb|EFY40935.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649152|gb|EFY45592.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655242|gb|EFY51551.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658289|gb|EFY54555.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664289|gb|EFY60486.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669457|gb|EFY65606.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673184|gb|EFY69290.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676575|gb|EFY72643.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683326|gb|EFY79340.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685788|gb|EFY81781.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715546|gb|EFZ07117.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130826|gb|ADX18256.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192535|gb|EFZ77764.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199580|gb|EFZ84671.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204644|gb|EFZ89642.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208092|gb|EFZ93037.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210185|gb|EFZ95086.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217051|gb|EGA01773.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220610|gb|EGA05059.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225470|gb|EGA09701.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229260|gb|EGA13384.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235425|gb|EGA19509.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237389|gb|EGA21452.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245144|gb|EGA29145.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248847|gb|EGA32773.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253134|gb|EGA36966.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258704|gb|EGA42365.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260609|gb|EGA44219.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266385|gb|EGA49873.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269784|gb|EGA53234.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624320|gb|EGE30665.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628698|gb|EGE35041.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989424|gb|AEF08407.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 241

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 122 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 181

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 182 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240


>gi|229087367|ref|ZP_04219507.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           Rock3-44]
 gi|228695935|gb|EEL48780.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           Rock3-44]
          Length = 268

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 49  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 100

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 101 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 133


>gi|229544246|ref|ZP_04433305.1| ABC transporter related [Bacillus coagulans 36D1]
 gi|229325385|gb|EEN91061.1| ABC transporter related [Bacillus coagulans 36D1]
          Length = 252

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 16/88 (18%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128
           ++GPSGSGK+ L N+ S   R +R         SI I+ +    ++D  L +F    L  
Sbjct: 37  IMGPSGSGKTTLLNVLSSIDRPSR--------GSIEIEGKALTKMKDKQLAEFRKRHLGF 88

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLP 156
           I    H  D        T  V   + LP
Sbjct: 89  IFQEYHLLD--------TLTVKENILLP 108


>gi|313672132|ref|YP_004050243.1| lipid a abc exporter, fused atpase and inner membrane subunits msba
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938888|gb|ADR18080.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 573

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 15/76 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL---------DSILIDTRKPVLL 113
           P   V LVGPSGSGK+ +AN+        RF ++++           D  L   R  + +
Sbjct: 360 PGETVALVGPSGSGKTTIANLLP------RFYDVSEGAIKIGGIDIRDFTLRSLRGNIAM 413

Query: 114 EDIDLLDFNDTQLFHI 129
              D+  FND+ +++I
Sbjct: 414 VSQDIFLFNDSIIYNI 429


>gi|289769507|ref|ZP_06528885.1| ATP-binding protein [Streptomyces lividans TK24]
 gi|289699706|gb|EFD67135.1| ATP-binding protein [Streptomyces lividans TK24]
          Length = 234

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLA 81
          + S P  P+RVV+L GPSGSGKS LA
Sbjct: 24 VSSHPPIPTRVVLLCGPSGSGKSLLA 49


>gi|169826399|ref|YP_001696557.1| ABC transporter ATP-binding protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990887|gb|ACA38427.1| ABC transporter ATP-binding protein [Lysinibacillus sphaericus
           C3-41]
          Length = 246

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 22/102 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+   N  S   R T           I+I+ R P +L D +L  F  ++L
Sbjct: 30  VAVMGPSGSGKTTFLNSVSTIDRPTA--------GDIVINNRNPYVLNDEELAKFRRSEL 81

Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
              F   N +H           T  V   + LP     L +A
Sbjct: 82  GFVFQDFNLVH-----------TLTVKENILLPLTLDSLPSA 112


>gi|254414409|ref|ZP_05028175.1| chromosomal replication initiator protein DnaA [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178639|gb|EDX73637.1| chromosomal replication initiator protein DnaA [Microcoleus
           chthonoplastes PCC 7420]
          Length = 461

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 28/151 (18%), Positives = 61/151 (40%), Gaps = 7/151 (4%)

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           W + P+  +  V         +A I  D  +S  F    ++ + +LID      ++ I+ 
Sbjct: 178 WENSPNSKIFYVSTEHFTNDLIAAIRKDSMQS--FREHYRAAEVLLIDD-----IQFIEG 230

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            ++   + FH  N++H+    +++ +   P         LCSR     +  I  PD +  
Sbjct: 231 KEYTQEEFFHTFNTLHEAGKQIVLASDRPPHQISRLQERLCSRFSMGLIADIQPPDLETR 290

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
             ++ K      I + + +  YI  + + ++
Sbjct: 291 MAILQKKAEYENIRLPRSVVEYIATQYKSNI 321


>gi|228974944|ref|ZP_04135505.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228784797|gb|EEM32815.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
          Length = 134

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 89  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121


>gi|91774357|ref|YP_544113.1| chromosomal replication initiator protein DnaA [Methylobacillus
           flagellatus KT]
 gi|123380248|sp|Q1GXK1|DNAA_METFK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|91708344|gb|ABE48272.1| chromosomal replication initiator protein DnaA [Methylobacillus
           flagellatus KT]
          Length = 470

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
           F     SLD +LID        DI           + F+  NS+ +    +++T  T+P 
Sbjct: 225 FKRQYHSLDLLLID--------DIQFFAKKSRTQEEFFYAFNSLIEAKKQIIITCDTYPK 276

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L +R      V +  P+ +    +++K     ++ +D+ +A +I +++  S+
Sbjct: 277 EIADVDERLRTRFSWGLTVAVEPPELEMRVAILLKKAEAARVTLDEDVAFFIAKQVRSSV 336

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              E  ++++  +A   G  I  SLA E LK+
Sbjct: 337 RELEGALNRIIAMANFTGHAIDVSLAKEALKD 368


>gi|307746965|gb|ADN90235.1| Chromosomal replication initiator protein dnaA [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 440

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P      +  L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGIIERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|116514954|ref|YP_802583.1| DnaA [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285650|sp|Q058F9|DNAA_BUCCC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|116256808|gb|ABJ90490.1| chromosomal replication initiator protein [Buchnera aphidicola str.
           Cc (Cinara cedri)]
          Length = 437

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 67/147 (45%), Gaps = 11/147 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F N  +S+D +L+D        DI        +  +LF+  N++      +++TA  +P
Sbjct: 192 KFKNYYRSIDVLLLD--------DIQFFSNKKKSQEELFNTFNTLFNKQQKIVLTADCYP 243

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR K    + I+ P+     K+++    + +I +  ++A YI +++  +
Sbjct: 244 EYISGITEQLKSRFKWGLTISINPPELKTRIKILLHKAYENKILLSYEVAKYIAKKIFSN 303

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLA 235
           +   E ++ K+  L++     IT +L 
Sbjct: 304 VRELEGILKKIQILSILNKEKITINLV 330


>gi|319893740|ref|YP_004150615.1| Chromosomal replication initiator protein DnaA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163436|gb|ADV06979.1| Chromosomal replication initiator protein DnaA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 447

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ    +++++   P         L SR +   +
Sbjct: 211 LLIDDIQFIQKKEQTQEEFFHTFNDLHQNKKQIVISSDRPPKEISTLEERLKSRFQWGLI 270

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 271 VDITPPDFETRMAILQKKTEEENLDIPIESLTYIANQIQTNIRELEGALTRVLAYSKLQG 330

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L A+ LK+  Q 
Sbjct: 331 KPITTELTADALKDIIQV 348


>gi|161612751|ref|YP_001586716.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197301043|ref|ZP_02663254.2| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205356906|ref|ZP_02343245.2| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|161362115|gb|ABX65883.1| hypothetical protein SPAB_00450 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197288946|gb|EDY28319.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205325251|gb|EDZ13090.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|321222802|gb|EFX47873.1| Chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 225

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 106 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 165

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 166 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 224


>gi|56412621|ref|YP_149696.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361556|ref|YP_002141192.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|81599733|sp|Q5PL41|HDA_SALPA RecName: Full=DnaA-homolog protein hda
 gi|226740579|sp|B5BB08|HDA_SALPK RecName: Full=DnaA-homolog protein hda
 gi|56126878|gb|AAV76384.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093032|emb|CAR58469.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 241

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 122 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 181

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 182 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240


>gi|332882720|ref|ZP_08450331.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679222|gb|EGJ52208.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 473

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FHI N +HQ    +++T+   PV        L SR K     +++ PD +   K++   
Sbjct: 256 FFHIFNHLHQTGKQVILTSDKAPVDLFDIEQRLLSRFKWGLSAELTTPDYNTRYKILQNK 315

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET--- 242
           F      I + + AY+ + +  ++   E + + +   A       +  LA  +++++   
Sbjct: 316 FYTDGAEISEDIIAYLAENIRTNVRELEGVSNSLIAQAAFNRKEYSIELAQSIIEKSVKN 375

Query: 243 QQCD 246
            QCD
Sbjct: 376 SQCD 379


>gi|296133562|ref|YP_003640809.1| chromosome segregation protein SMC [Thermincola sp. JR]
 gi|296032140|gb|ADG82908.1| chromosome segregation protein SMC [Thermincola potens JR]
          Length = 1189

 Score = 36.2 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 10/165 (6%)

Query: 66  VVILVGPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDF 121
           +  +VGP+GSGKS +++   W    +S +    AK  D I    D RKPV + ++ L   
Sbjct: 26  ITAVVGPNGSGKSNISDAIRWVLGEQSAKILRGAKMEDVIFSGSDKRKPVGMAEVTLTLD 85

Query: 122 NDTQLFHIINSIHQYDSSLLMTART-FPVSWGVC-LPDLCSRLKAATVVK--ISLPDDDF 177
           N T +F +  S       +  +  + F ++   C L D+        + K   S+     
Sbjct: 86  NSTGIFPVEYSEVTVTRRVFRSGESEFFINKTPCRLKDIHELFMDTGIGKEGYSIIGQGK 145

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +++++     DR++ I++  AA IV+   R L  A KL D   N+
Sbjct: 146 IDEILSSKSEDRRLIIEE--AAGIVKYKNRKLQAARKLEDTEQNM 188


>gi|296118604|ref|ZP_06837182.1| DNA-directed DNA replication initiator protein [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968503|gb|EFG81750.1| DNA-directed DNA replication initiator protein [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 381

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145
           R   F    ++LD +++D        DI  L+  ++   + FH  N++HQ +  +++++ 
Sbjct: 127 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 178

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L +R +   +  I  PD +    +++K  +     +D+ +   I  R 
Sbjct: 179 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKASADGTTVDRAVLELIASRF 238

Query: 206 ERSL 209
           E S+
Sbjct: 239 ESSI 242


>gi|15235986|ref|NP_194305.1| ABC transporter family protein [Arabidopsis thaliana]
 gi|75337760|sp|Q9SW08|AB4G_ARATH RecName: Full=ABC transporter G family member 4; Short=ABC
           transporter ABCG.4; Short=AtABCG4; AltName:
           Full=White-brown complex homolog protein 4; Short=AtWBC4
 gi|4539293|emb|CAB39596.1| putative membrane transporter [Arabidopsis thaliana]
 gi|7269425|emb|CAB81385.1| putative membrane transporter [Arabidopsis thaliana]
 gi|332659709|gb|AEE85109.1| ABC transporter G family member 4 [Arabidopsis thaliana]
          Length = 577

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 21/107 (19%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           S PS+++ ++GPSG+GKS L +I + ++  T  S +   L+S+LI               
Sbjct: 38  SHPSQILAIIGPSGAGKSTLLDILAARTSPTSGSIL---LNSVLI--------------- 79

Query: 121 FNDTQLFHIINSIHQYDS--SLLMTARTFPVSWGVCLPDLCSRLKAA 165
            N +    I + + Q+D+   LL  + TF  S  + LP   S++ + 
Sbjct: 80  -NPSSYRKISSYVPQHDTFFPLLTVSETFTFSASLLLPKNLSKVSSV 125


>gi|323463201|gb|ADX75354.1| chromosomal replication initiator protein DnaA [Staphylococcus
           pseudintermedius ED99]
          Length = 447

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 111 VLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   +    + FH  N +HQ    +++++   P         L SR +   +
Sbjct: 211 LLIDDIQFIQKKEQTQEEFFHTFNDLHQNKKQIVISSDRPPKEISTLEERLKSRFQWGLI 270

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G
Sbjct: 271 VDITPPDFETRMAILQKKTEEENLDIPIESLTYIANQIQTNIRELEGALTRVLAYSKLQG 330

Query: 228 MGITRSLAAEVLKETQQC 245
             IT  L A+ LK+  Q 
Sbjct: 331 KPITTELTADALKDIIQV 348


>gi|319942621|ref|ZP_08016929.1| hypothetical protein HMPREF9464_02148 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803800|gb|EFW00732.1| hypothetical protein HMPREF9464_02148 [Sutterella wadsworthensis
           3_1_45B]
          Length = 585

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 63  PSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           P  ++ LVG SG+GKS L N+    W        F  IA+S +  L   RK + L   D+
Sbjct: 369 PGEMIALVGSSGAGKSTLINLIPRFWVPTEGEIYFDGIAQS-ELTLKSLRKQIGLVSQDV 427

Query: 119 LDFNDT 124
             F+DT
Sbjct: 428 TIFDDT 433


>gi|239608100|gb|EEQ85087.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis ER-3]
          Length = 831

 Score = 36.2 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S
Sbjct: 575 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 614


>gi|21223283|ref|NP_629062.1| ATP-binding protein [Streptomyces coelicolor A3(2)]
 gi|20520709|emb|CAD30900.1| putative ATP-binding protein [Streptomyces coelicolor A3(2)]
          Length = 258

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLA 81
          + S P  P+RVV+L GPSGSGKS LA
Sbjct: 48 VSSHPPIPTRVVLLCGPSGSGKSLLA 73


>gi|189200505|ref|XP_001936589.1| hypothetical protein PTRG_06256 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983688|gb|EDU49176.1| hypothetical protein PTRG_06256 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 662

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105
           P+R ++L GP G+GK+ LA   + +S+ST F+  A SL S  +
Sbjct: 406 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTSKFL 448


>gi|327349285|gb|EGE78142.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis ATCC 18188]
          Length = 840

 Score = 36.2 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S
Sbjct: 584 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 623


>gi|118479954|ref|YP_897105.1| ABC transporter ATP-binding protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419179|gb|ABK87598.1| ABC transporter, ATP-binding protein [Bacillus thuringiensis str.
           Al Hakam]
          Length = 261

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 42  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 93

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 94  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 126


>gi|50308283|ref|XP_454142.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643277|emb|CAG99229.1| KLLA0E04379p [Kluyveromyces lactis]
          Length = 729

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 479 PVRGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 518


>gi|330470833|ref|YP_004408576.1| chromosomal replication initiator protein DnaA [Verrucosispora
           maris AB-18-032]
 gi|328813804|gb|AEB47976.1| chromosomal replication initiator protein DnaA [Verrucosispora
           maris AB-18-032]
          Length = 607

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L+  +    + FH  N++H  +  +++T+   P         L +R +   +
Sbjct: 369 LLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLL 428

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    ++ K  A  +++    +  +I  R+  S+   E  + ++   A    
Sbjct: 429 ADIQPPDLETRIAILQKKAAQERLYAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTR 488

Query: 228 MGITRSLAAEVLKE 241
             +  SLA EVL++
Sbjct: 489 SSVELSLAEEVLRD 502


>gi|61212565|sp|Q6ARL8|DNAA_DESPS RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 479

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 3/139 (2%)

Query: 111 VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L+EDI  L        +L  +++++ +    +L+TA   P        +  SR+ A  +
Sbjct: 245 LLVEDIHTLKGKKKTQEELNEVLDTLVKSGKRVLLTANAAPRELAGIDGEFRSRMSAGLI 304

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD     +++ +  A +++  D+ + +Y+ Q +   +   E  +  +   A   G
Sbjct: 305 TSIQAPDIKTRSRIVERKAAGQRLSFDEDMTSYLAQNVRGDVRQIESAITAIGARARLMG 364

Query: 228 MGITRSLAAEVLKETQQCD 246
             I  +L  EV+     C+
Sbjct: 365 GYIDMNLIREVVGSVVGCN 383


>gi|75759280|ref|ZP_00739379.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228910684|ref|ZP_04074495.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           IBL 200]
 gi|74493229|gb|EAO56346.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228848952|gb|EEM93795.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           IBL 200]
          Length = 261

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 42  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 93

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 94  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 126


>gi|281413983|ref|ZP_06245725.1| AAA+ family ATPase [Micrococcus luteus NCTC 2665]
          Length = 332

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 32/176 (18%)

Query: 44  LVHSAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK-----------SRST 91
           L H  +EQ  R  +      P+R ++L GP G+GK+  A + + +           +  T
Sbjct: 101 LTHVLLEQRQRDALARHGLTPARRLLLTGPPGTGKTSTARVIAGELGLPLFSIRLDTVLT 160

Query: 92  RF-SNIAKSLDSI---LIDTRKPVLLEDIDLLDF-----NDT-QLFHIINSIHQY----- 136
           +F    A  L  +   L +TR   L +++D L       ND  ++  ++NS  Q+     
Sbjct: 161 KFMGETAAKLRLVFDALAETRGVYLFDEVDALGGDRAAQNDVGEIRRVLNSFLQFLEEDT 220

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
             S+++ A   P      L D     +  TV+  +LPDD  +E VI    A   I+
Sbjct: 221 SDSVIIAATNHP-----SLLDNALFRRFDTVMDFALPDDAAVESVIKNRLASFHIY 271


>gi|229112296|ref|ZP_04241835.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           Rock1-15]
 gi|228671136|gb|EEL26441.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           Rock1-15]
          Length = 256

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 89  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121


>gi|223993497|ref|XP_002286432.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977747|gb|EED96073.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 791

 Score = 36.2 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           ++ +AAT  K ++ +   LE    ++  +R+  I  ++A    +R+ER  +  ++L D+ 
Sbjct: 598 AKARAATE-KSAMEEKRRLEAEATRLRMEREKRIAAEIATKESERLERERLEDQRLRDEK 656

Query: 220 DNLALSRGMGITRSLAAEVLKETQQCD 246
           +   +SR +   +S A+EV+K+ QQ D
Sbjct: 657 EKRCISRVLEEAKSEASEVMKQAQQMD 683


>gi|325953648|ref|YP_004237308.1| Chromosomal replication initiator protein dnaA [Weeksella virosa
           DSM 16922]
 gi|323436266|gb|ADX66730.1| Chromosomal replication initiator protein dnaA [Weeksella virosa
           DSM 16922]
          Length = 475

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 19/169 (11%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
           LVH AI Q ++ +     +P + V+ V         + N  ++KS++  F +  + +D +
Sbjct: 189 LVH-AIGQEIKEL-----YPDKSVLYVSTEKFTMQFI-NAVANKSQND-FVHFYQMIDVL 240

Query: 104 LIDTRKPVLLEDIDLLDFN-DTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           +ID        DI  L     TQ   FHI N + Q    +++T+   P +     P L S
Sbjct: 241 IID--------DIQFLAGKAKTQEAFFHIFNDLQQKGKQIILTSDKSPATLTEMEPRLIS 292

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           R K     ++ +PD      +I +      I I + +  YI + +E ++
Sbjct: 293 RFKWGLNAELQMPDASTRRNIIQQKVEKDGIEIPETVLDYIAENVETNV 341


>gi|119194717|ref|XP_001247962.1| hypothetical protein CIMG_01733 [Coccidioides immitis RS]
          Length = 734

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 479 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISATSLTS 518


>gi|194335531|ref|YP_002017325.1| type I secretion system ATPase [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308008|gb|ACF42708.1| type I secretion system ATPase [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 570

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 64  SRVVILVGPSGSGKS----CLANIWSD-KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
            +V +++GPSGSGKS    C+  IW D K R        +S D + +      L +DI+L
Sbjct: 358 GKVTVVLGPSGSGKSTLARCIVGIWPDTKGRVLIDGEPIESWDRMELGPHIGYLPQDIEL 417

Query: 119 LD 120
            D
Sbjct: 418 FD 419


>gi|42784031|ref|NP_981278.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987]
 gi|47568005|ref|ZP_00238711.1| ABC transporter, ATP-binding protein [Bacillus cereus G9241]
 gi|49478793|ref|YP_038877.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196043979|ref|ZP_03111216.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus
           03BB108]
 gi|217962321|ref|YP_002340893.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus AH187]
 gi|222098306|ref|YP_002532363.1| ABC transporter , ATP-binding protein [Bacillus cereus Q1]
 gi|225866833|ref|YP_002752211.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus
           03BB102]
 gi|228988094|ref|ZP_04148193.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229093941|ref|ZP_04225032.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           Rock3-42]
 gi|229141572|ref|ZP_04270104.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           BDRD-ST26]
 gi|229158453|ref|ZP_04286514.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus ATCC
           4342]
 gi|229163830|ref|ZP_04291773.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           R309803]
 gi|229187096|ref|ZP_04314245.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BGSC
           6E1]
 gi|229199001|ref|ZP_04325687.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus m1293]
 gi|42739961|gb|AAS43886.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987]
 gi|47555308|gb|EAL13653.1| ABC transporter, ATP-binding protein [Bacillus cereus G9241]
 gi|49330349|gb|AAT60995.1| ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|196025315|gb|EDX63985.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus
           03BB108]
 gi|217066305|gb|ACJ80555.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus AH187]
 gi|221242364|gb|ACM15074.1| ABC transporter, ATP-binding protein [Bacillus cereus Q1]
 gi|225786824|gb|ACO27041.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus
           03BB102]
 gi|228584467|gb|EEK42599.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus m1293]
 gi|228596405|gb|EEK54076.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BGSC
           6E1]
 gi|228619650|gb|EEK76533.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           R309803]
 gi|228624972|gb|EEK81738.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus ATCC
           4342]
 gi|228641852|gb|EEK98151.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           BDRD-ST26]
 gi|228689423|gb|EEL43237.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           Rock3-42]
 gi|228771592|gb|EEM20059.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|324328733|gb|ADY23993.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 256

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 89  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121


>gi|324011194|gb|EGB80413.1| DnaA regulatory inactivator Hda [Escherichia coli MS 60-1]
          Length = 274

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 155 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 214

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 215 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 273


>gi|229014038|ref|ZP_04171162.1| Efflux ABC transporter, ATP-binding protein [Bacillus mycoides DSM
           2048]
 gi|229020085|ref|ZP_04176866.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           AH1273]
 gi|229026314|ref|ZP_04182673.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           AH1272]
 gi|228735030|gb|EEL85666.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           AH1272]
 gi|228741195|gb|EEL91412.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           AH1273]
 gi|228747294|gb|EEL97173.1| Efflux ABC transporter, ATP-binding protein [Bacillus mycoides DSM
           2048]
          Length = 256

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 89  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121


>gi|30022900|ref|NP_834531.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579]
 gi|206969438|ref|ZP_03230392.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus
           AH1134]
 gi|218234562|ref|YP_002369640.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus B4264]
 gi|228955107|ref|ZP_04117122.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228961103|ref|ZP_04122729.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228981537|ref|ZP_04141834.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           Bt407]
 gi|229048538|ref|ZP_04194099.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus AH676]
 gi|229072335|ref|ZP_04205539.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           F65185]
 gi|229082081|ref|ZP_04214564.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           Rock4-2]
 gi|229130114|ref|ZP_04259075.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           BDRD-Cer4]
 gi|229147404|ref|ZP_04275753.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           BDRD-ST24]
 gi|229153036|ref|ZP_04281217.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus m1550]
 gi|229181150|ref|ZP_04308482.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           172560W]
 gi|229193113|ref|ZP_04320068.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus ATCC
           10876]
 gi|296505295|ref|YP_003666995.1| ABC transporter ATP-binding protein [Bacillus thuringiensis BMB171]
 gi|29898459|gb|AAP11732.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579]
 gi|206735126|gb|EDZ52294.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus
           AH1134]
 gi|218162519|gb|ACK62511.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus B4264]
 gi|228590377|gb|EEK48241.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus ATCC
           10876]
 gi|228602341|gb|EEK59830.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           172560W]
 gi|228630456|gb|EEK87104.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus m1550]
 gi|228636086|gb|EEK92567.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           BDRD-ST24]
 gi|228653329|gb|EEL09206.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           BDRD-Cer4]
 gi|228701228|gb|EEL53731.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           Rock4-2]
 gi|228710760|gb|EEL62731.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           F65185]
 gi|228722802|gb|EEL74186.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus AH676]
 gi|228778216|gb|EEM26486.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           Bt407]
 gi|228798546|gb|EEM45533.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804617|gb|EEM51221.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|296326347|gb|ADH09275.1| ABC transporter ATP-binding protein [Bacillus thuringiensis BMB171]
 gi|326942615|gb|AEA18511.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 256

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 89  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121


>gi|269122801|ref|YP_003305378.1| Chromosomal replication initiator DnaA [Streptobacillus
           moniliformis DSM 12112]
 gi|268314127|gb|ACZ00501.1| Chromosomal replication initiator DnaA [Streptobacillus
           moniliformis DSM 12112]
          Length = 441

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 30/180 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDK------------SRSTRFSN-IAKSLDSILIDTRKPVLL 113
           +++ G SG GK+ LA    ++            + ST FSN + KS       + K    
Sbjct: 136 LMIYGDSGLGKTHLAQAIGNEMIEKNPESKVFYTTSTEFSNELIKSFSERTTISFKDKY- 194

Query: 114 EDIDLLDFNDTQLFHII----------------NSIHQYDSSLLMTARTFPVSWGVCLPD 157
            D+D+L  +D Q F  I                N++H  +  +++ +  +P         
Sbjct: 195 ADLDMLIVDDIQFFENIFGKGDDKIQKEFYNAFNTLHMANKPIILISDKYPEELTNVEAR 254

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SRL +  +V++ +PD      +I  +     I +D++L  +I   +E ++   E  V+
Sbjct: 255 LISRLVSGALVELKMPDKTSRISIIKTIITKENIPMDQELMYFIADELETNIRELEGFVN 314


>gi|227539247|ref|ZP_03969296.1| DNA-directed DNA replication initiator protein [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300770720|ref|ZP_07080599.1| DNA-directed DNA replication initiator protein [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227240929|gb|EEI90944.1| DNA-directed DNA replication initiator protein [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300763196|gb|EFK60013.1| DNA-directed DNA replication initiator protein [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 475

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 19/153 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR-FSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P ++VI V      K C   + S K+ +   F N  +++D I++D          D+ +F
Sbjct: 201 PDKLVIYVSCE---KFCQQFVDSLKNNTINDFVNFYQAMDVIIMD----------DVHNF 247

Query: 122 NDTQ-----LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              +      FHI N +HQ    +++T+   P         L SR K      I +PD +
Sbjct: 248 AGKEKTQDIFFHIFNHLHQSGKQIILTSDKAPKDLAGLEERLLSRFKWGLSADIQVPDLE 307

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
               ++ K      I + + +  Y+  +++ S+
Sbjct: 308 TRMAILKKKMYSDGIELPENVVEYVAHQIDNSV 340


>gi|206976956|ref|ZP_03237857.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus
           H3081.97]
 gi|206744761|gb|EDZ56167.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus
           H3081.97]
          Length = 256

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 89  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121


>gi|300958876|ref|ZP_07170982.1| DnaA regulatory inactivator Hda [Escherichia coli MS 175-1]
 gi|300314478|gb|EFJ64262.1| DnaA regulatory inactivator Hda [Escherichia coli MS 175-1]
          Length = 274

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 155 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 214

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 215 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 273


>gi|269215749|ref|ZP_06159603.1| ABC transporter, permease/ATP-binding protein [Slackia exigua ATCC
           700122]
 gi|269130699|gb|EEZ61775.1| ABC transporter, permease/ATP-binding protein [Slackia exigua ATCC
           700122]
          Length = 579

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 8/88 (9%)

Query: 65  RVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNI-AKSLDSILIDTRKPVLLEDIDLL 119
           +V  +VGPSGSGKS L    A  W   + + R   I  +S+DS  +      + +D+ L 
Sbjct: 363 KVTAIVGPSGSGKSTLLRLIARFWDVDAGAVRIGGIDVRSVDSEHLMNYLSFVFQDVVL- 421

Query: 120 DFNDTQLFHI-INSIHQYDSSLLMTART 146
            F+DT + +I I +    D  +++ AR 
Sbjct: 422 -FDDTVMNNIRIGNSQATDEQVMVAARA 448


>gi|255947392|ref|XP_002564463.1| Pc22g04240 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591480|emb|CAP97712.1| Pc22g04240 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 819

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 563 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 602


>gi|218900000|ref|YP_002448411.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus G9842]
 gi|228903347|ref|ZP_04067478.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           IBL 4222]
 gi|228923585|ref|ZP_04086865.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229032492|ref|ZP_04188460.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           AH1271]
 gi|218542170|gb|ACK94564.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus G9842]
 gi|228728861|gb|EEL79869.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           AH1271]
 gi|228836054|gb|EEM81415.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228856308|gb|EEN00837.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           IBL 4222]
          Length = 256

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 89  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121


>gi|196041421|ref|ZP_03108714.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus
           NVH0597-99]
 gi|196027669|gb|EDX66283.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus
           NVH0597-99]
          Length = 256

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 89  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121


>gi|25026557|ref|NP_736611.1| chromosomal replication initiation protein [Corynebacterium
           efficiens YS-314]
 gi|38257617|sp|Q8FUL7|DNAA_COREF RecName: Full=Chromosomal replication initiator protein DnaA
 gi|23491836|dbj|BAC16811.1| putative chromosomal replication initiator protein DnaA
           [Corynebacterium efficiens YS-314]
          Length = 573

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145
           R   F    ++LD +++D        DI  L   +    + FH  N++HQ +  +++++ 
Sbjct: 319 RQESFKRRYRNLDILMVD--------DIQFLAGKEGTQEEFFHTFNALHQAEKQIILSSD 370

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L +R +   +  I  PD +    +++K        +D+++   I  R 
Sbjct: 371 RPPRQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAQADGTHVDREVLELIASRF 430

Query: 206 ERSL 209
           E S+
Sbjct: 431 ESSI 434


>gi|172039893|ref|YP_001799607.1| MshA glycosyltransferase [Corynebacterium urealyticum DSM 7109]
 gi|310947058|sp|B1VEI4|MSHA_CORU7 RecName: Full=D-inositol-3-phosphate glycosyltransferase; AltName:
           Full=N-acetylglucosamine-inositol-phosphate
           N-acetylglucosaminyltransferase; Short=GlcNAc-Ins-P
           N-acetylglucosaminyltransferase
 gi|171851197|emb|CAQ04173.1| MshA glycosyltransferase [Corynebacterium urealyticum DSM 7109]
          Length = 424

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVVILVGPSGSG---KSCLANIWSDK--SRSTRF 93
           H  ++ A  LI+ +P  P RV+I  GPSGSG     CL  +  +   SR+ RF
Sbjct: 239 HVLLQAAATLIERYPDMPIRVLICGGPSGSGLERPKCLEELAEELGISRAVRF 291


>gi|115389874|ref|XP_001212442.1| vacuolar sorting protein 4b [Aspergillus terreus NIH2624]
 gi|114194838|gb|EAU36538.1| vacuolar sorting protein 4b [Aspergillus terreus NIH2624]
          Length = 748

 Score = 36.2 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 489 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 528


>gi|301046372|ref|ZP_07193533.1| DnaA regulatory inactivator Hda [Escherichia coli MS 185-1]
 gi|300301654|gb|EFJ58039.1| DnaA regulatory inactivator Hda [Escherichia coli MS 185-1]
          Length = 269

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 150 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 209

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 210 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 268


>gi|315288098|gb|EFU47498.1| DnaA regulatory inactivator Hda [Escherichia coli MS 110-3]
          Length = 230

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 111 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 170

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 171 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 229


>gi|50547369|ref|XP_501154.1| YALI0B20834p [Yarrowia lipolytica]
 gi|49647020|emb|CAG83407.1| YALI0B20834p [Yarrowia lipolytica]
          Length = 1050

 Score = 36.2 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S
Sbjct: 800 PARGMLLFGPPGTGKTMLARAVATESNSTFFSISASSLTS 839


>gi|315640356|ref|ZP_07895472.1| DNA-directed DNA replication initiator protein [Enterococcus
           italicus DSM 15952]
 gi|315483892|gb|EFU74372.1| DNA-directed DNA replication initiator protein [Enterococcus
           italicus DSM 15952]
          Length = 446

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 11/152 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
            F N  +++D +L+D        DI  L   +    + F+    ++  +  +++T+   P
Sbjct: 199 EFRNEYRTVDLLLVD--------DIQFLVNKEGTQEEFFNTFEELYLNNKQIVLTSDRLP 250

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR      V I+ PD +    ++ K      + I     +YI  +++ +
Sbjct: 251 NEIPTLPERLVSRFAWGLSVDITPPDLETRTAILRKKAEAENLEIPDDTLSYIAGQIDSN 310

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +   E  + ++   A  R + IT SLAAE LK
Sbjct: 311 IRELEGALVRVQAFAAMRNVDITTSLAAEALK 342


>gi|269849587|sp|B7LKE6|HDA_ESCF3 RecName: Full=DnaA-homolog protein hda
          Length = 233

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 126 LFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183
           +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ + +
Sbjct: 117 IFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 176

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 177 RARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 232


>gi|259508311|ref|ZP_05751211.1| chromosomal replication initiator protein DnaA [Corynebacterium
           efficiens YS-314]
 gi|259164129|gb|EEW48683.1| chromosomal replication initiator protein DnaA [Corynebacterium
           efficiens YS-314]
          Length = 566

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145
           R   F    ++LD +++D        DI  L   +    + FH  N++HQ +  +++++ 
Sbjct: 312 RQESFKRRYRNLDILMVD--------DIQFLAGKEGTQEEFFHTFNALHQAEKQIILSSD 363

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L +R +   +  I  PD +    +++K        +D+++   I  R 
Sbjct: 364 RPPRQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAQADGTHVDREVLELIASRF 423

Query: 206 ERSL 209
           E S+
Sbjct: 424 ESSI 427


>gi|229135678|ref|ZP_04264455.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           BDRD-ST196]
 gi|228647776|gb|EEL03834.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus
           BDRD-ST196]
          Length = 256

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 89  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121


>gi|296271546|ref|YP_003654177.1| chromosomal replication initiator protein DnaA [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095721|gb|ADG91671.1| chromosomal replication initiator protein DnaA [Arcobacter
           nitrofigilis DSM 7299]
          Length = 437

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L   +    + FH  N +H  +  ++MT+   P      +  L SR +    
Sbjct: 200 LLIDDIQFLSGKEQTQEEFFHTFNELHNAEKQIVMTSDRLPSQIAGLVDRLKSRFEWGLT 259

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LS 225
             + +P  +    +I K      I +++++  YI   ++ S+   E ++ +++  A  L+
Sbjct: 260 ADVQIPGLETKIAIIEKKSELNGIHLEREIVNYIATNLDNSIREIEGVLIRINASAALLN 319

Query: 226 RGMGI--TRSLAAEVLKETQQ 244
           + + +   ++L  E +KET++
Sbjct: 320 QEINLPMVQNLLKEQIKETKE 340


>gi|300940261|ref|ZP_07154858.1| DnaA regulatory inactivator Hda [Escherichia coli MS 21-1]
 gi|300454902|gb|EFK18395.1| DnaA regulatory inactivator Hda [Escherichia coli MS 21-1]
          Length = 270

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 151 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 210

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 211 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 269


>gi|296814720|ref|XP_002847697.1| vacuolar sorting protein 4b [Arthroderma otae CBS 113480]
 gi|238840722|gb|EEQ30384.1| vacuolar sorting protein 4b [Arthroderma otae CBS 113480]
          Length = 815

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 571 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASSLAS 610


>gi|194288949|ref|YP_002004856.1| lipida exportABC system; composite ATP-binding membrane component
           [Cupriavidus taiwanensis LMG 19424]
 gi|193222784|emb|CAQ68787.1| lipidA exportABC system; composite ATP-binding membrane component
           [Cupriavidus taiwanensis LMG 19424]
          Length = 591

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P  VV LVGPSGSGK+ L N+   + D +      +     +  L D R  +     D++
Sbjct: 374 PGEVVALVGPSGSGKTTLVNLVPRFFDPTSGRILLDGVPLTELALKDLRNQIAFVSQDVV 433

Query: 120 DFNDT 124
            FNDT
Sbjct: 434 LFNDT 438


>gi|78484347|ref|YP_390272.1| chromosomal replication initiator protein DnaA [Thiomicrospira
           crunogena XCL-2]
 gi|123728109|sp|Q31JS5|DNAA_THICR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78362633|gb|ABB40598.1| chromosomal replication initiator protein DnaA [Thiomicrospira
           crunogena XCL-2]
          Length = 467

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
           F    +SLD++LID        DI      + +  + FH  N++ + +  +++T+  FP 
Sbjct: 222 FKRFYRSLDALLID--------DIQFFAKKEQSQEEFFHTFNTLLEGNKQVILTSDRFPK 273

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L SR      + +  P+ +    +++K  A+    +  ++A +I +R+  ++
Sbjct: 274 EVDGLEDRLKSRFGWGLTIAVEPPEFEMRVAILMKKAAEFGFLLPDEVAFFIAKRLRGNV 333

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              E  + ++   A      +T  LA + LK+
Sbjct: 334 RDLEGALKRVGAFAQFTQQLVTVDLAKDALKD 365


>gi|51244130|ref|YP_064014.1| chromosomal replication initiator protein DnaA [Desulfotalea
           psychrophila LSv54]
 gi|50875167|emb|CAG35007.1| related to chromosomal replication initiator protein DnaA
           [Desulfotalea psychrophila LSv54]
          Length = 487

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 3/139 (2%)

Query: 111 VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L+EDI  L        +L  +++++ +    +L+TA   P        +  SR+ A  +
Sbjct: 253 LLVEDIHTLKGKKKTQEELNEVLDTLVKSGKRVLLTANAAPRELAGIDGEFRSRMSAGLI 312

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD     +++ +  A +++  D+ + +Y+ Q +   +   E  +  +   A   G
Sbjct: 313 TSIQAPDIKTRSRIVERKAAGQRLSFDEDMTSYLAQNVRGDVRQIESAITAIGARARLMG 372

Query: 228 MGITRSLAAEVLKETQQCD 246
             I  +L  EV+     C+
Sbjct: 373 GYIDMNLIREVVGSVVGCN 391


>gi|322515535|ref|ZP_08068519.1| DnaA regulatory inactivator Hda [Actinobacillus ureae ATCC 25976]
 gi|322118425|gb|EFX90682.1| DnaA regulatory inactivator Hda [Actinobacillus ureae ATCC 25976]
          Length = 236

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 126 LFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           +F++ N I +        + + LL++A   P    + LPDL SRL    V +++   D+ 
Sbjct: 113 IFNLFNQIREQQGLFGSGHKTLLLISADCPPHQLKINLPDLRSRLTWGEVYQLNDLSDEQ 172

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
              ++ +    + + +  ++A ++++R++R L      +D++D  +L     +T     E
Sbjct: 173 KRIILQRNAYQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKLTVPFVKE 232

Query: 238 VL 239
           +L
Sbjct: 233 IL 234


>gi|300897622|ref|ZP_07116027.1| DnaA regulatory inactivator Hda [Escherichia coli MS 198-1]
 gi|300997976|ref|ZP_07181907.1| DnaA regulatory inactivator Hda [Escherichia coli MS 200-1]
 gi|301329019|ref|ZP_07222046.1| DnaA regulatory inactivator Hda [Escherichia coli MS 78-1]
 gi|301644486|ref|ZP_07244483.1| DnaA regulatory inactivator Hda [Escherichia coli MS 146-1]
 gi|300304077|gb|EFJ58597.1| DnaA regulatory inactivator Hda [Escherichia coli MS 200-1]
 gi|300358622|gb|EFJ74492.1| DnaA regulatory inactivator Hda [Escherichia coli MS 198-1]
 gi|300844653|gb|EFK72413.1| DnaA regulatory inactivator Hda [Escherichia coli MS 78-1]
 gi|301077231|gb|EFK92037.1| DnaA regulatory inactivator Hda [Escherichia coli MS 146-1]
          Length = 257

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 138 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 197

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 198 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256


>gi|291565552|dbj|BAI87834.1| AAA ATPase [Aspergillus oryzae]
          Length = 784

 Score = 35.8 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 528 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 567


>gi|237653423|ref|YP_002889737.1| DnaA regulatory inactivator Hda [Thauera sp. MZ1T]
 gi|237624670|gb|ACR01360.1| DnaA regulatory inactivator Hda [Thauera sp. MZ1T]
          Length = 230

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 87/185 (47%), Gaps = 8/185 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN---IAKSLDSILIDTRKPVL-LEDIDL 118
           P+R + L G  GSG+S L     D +R+         A +++  L +T   +L ++D D 
Sbjct: 44  PARHIYLWGAPGSGRSHLLRAAVDAARAAGRPAHLLAAATVEDHLPETPGALLAIDDADQ 103

Query: 119 LD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLPDDD 176
           L       LF+  N       SLL+     P+  G+ L  DL +R+  + + ++   DDD
Sbjct: 104 LGAAAQIALFNAFNRARANGQSLLLCGPAAPL--GLALREDLRTRIGQSLIYEVKPLDDD 161

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
              +++  + A R + +  ++  ++++   R L    +++D +D  +L     IT  L  
Sbjct: 162 ARAEILTTLAARRGLRLADEVVDFLLRHGRRELSSLREVLDALDRASLEHKRPITLPLLR 221

Query: 237 EVLKE 241
           +++++
Sbjct: 222 DMIQQ 226


>gi|148926820|ref|ZP_01810499.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145844545|gb|EDK21652.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 383

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|324008594|gb|EGB77813.1| DnaA regulatory inactivator Hda [Escherichia coli MS 57-2]
          Length = 257

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 138 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 197

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 198 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256


>gi|317143566|ref|XP_001819556.2| AAA family ATPase [Aspergillus oryzae RIB40]
          Length = 769

 Score = 35.8 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 527 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 566


>gi|119485656|ref|ZP_01619931.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106]
 gi|119456981|gb|EAW38108.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106]
          Length = 452

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 7/165 (4%)

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS 139
           +A I  D  +S  F +  ++ D +L+D      ++ I+  ++   + FH  N++H+    
Sbjct: 193 IAAIRKDSMQS--FRDHYRAADVLLVDD-----IQFIEGKEYTQEEFFHTFNTLHEAGKQ 245

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           +++ +   P         LCSR     V  I  PD +    ++ K      + + + +  
Sbjct: 246 VVLASDRPPNQIPRLQERLCSRFSMGLVADIQPPDLETRMAILQKKAEYENVRLSEGVVE 305

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           YI  R   ++   E  + +        G+ +T    A VL   +Q
Sbjct: 306 YIASRYTSNIRELEGALIRAVAYTSISGLPMTVESIAPVLSPAEQ 350


>gi|226524737|ref|NP_416991.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K-12 substr. MG1655]
 gi|293405931|ref|ZP_06649923.1| DNA replication initiation factor [Escherichia coli FVEC1412]
 gi|293410891|ref|ZP_06654467.1| DnaA regulatory inactivator Hda [Escherichia coli B354]
 gi|293446849|ref|ZP_06663271.1| DnaA regulatory inactivator Hda [Escherichia coli B088]
 gi|298381680|ref|ZP_06991279.1| DNA replication initiation factor [Escherichia coli FVEC1302]
 gi|269849566|sp|A7ZPT9|HDA_ECO24 RecName: Full=DnaA-homolog protein hda
 gi|269849567|sp|B7UGN4|HDA_ECO27 RecName: Full=DnaA-homolog protein hda
 gi|269849568|sp|B7MHX7|HDA_ECO45 RecName: Full=DnaA-homolog protein hda
 gi|269849569|sp|B7LCN6|HDA_ECO55 RecName: Full=DnaA-homolog protein hda
 gi|269849570|sp|P69933|HDA_ECO57 RecName: Full=DnaA-homolog protein hda
 gi|269849571|sp|B5Z033|HDA_ECO5E RecName: Full=DnaA-homolog protein hda
 gi|269849572|sp|B7NQN5|HDA_ECO7I RecName: Full=DnaA-homolog protein hda
 gi|269849573|sp|B7MYC3|HDA_ECO81 RecName: Full=DnaA-homolog protein hda
 gi|269849574|sp|B7M7K0|HDA_ECO8A RecName: Full=DnaA-homolog protein hda
 gi|269849575|sp|C4ZX71|HDA_ECOBW RecName: Full=DnaA-homolog protein hda
 gi|269849576|sp|B1XAX1|HDA_ECODH RecName: Full=DnaA-homolog protein hda
 gi|269849577|sp|A8A2Y8|HDA_ECOHS RecName: Full=DnaA-homolog protein hda
 gi|269849578|sp|A1ADY9|HDA_ECOK1 RecName: Full=DnaA-homolog protein hda
 gi|269849579|sp|Q0TEZ2|HDA_ECOL5 RecName: Full=DnaA-homolog protein hda
 gi|269849580|sp|P69932|HDA_ECOL6 RecName: Full=DnaA-homolog protein hda
 gi|269849581|sp|B1IWG4|HDA_ECOLC RecName: Full=DnaA-homolog protein hda
 gi|269849582|sp|P69931|HDA_ECOLI RecName: Full=DnaA-homolog protein hda
 gi|269849583|sp|B7N678|HDA_ECOLU RecName: Full=DnaA-homolog protein hda
 gi|269849584|sp|B6I568|HDA_ECOSE RecName: Full=DnaA-homolog protein hda
 gi|269849585|sp|B1LNE6|HDA_ECOSM RecName: Full=DnaA-homolog protein hda
 gi|269849586|sp|Q1R8P2|HDA_ECOUT RecName: Full=DnaA-homolog protein hda
 gi|269849588|sp|B2TXS1|HDA_SHIB3 RecName: Full=DnaA-homolog protein hda
 gi|269849589|sp|Q31XZ6|HDA_SHIBS RecName: Full=DnaA-homolog protein hda
 gi|269849590|sp|Q32D72|HDA_SHIDS RecName: Full=DnaA-homolog protein hda
 gi|269849591|sp|Q0T224|HDA_SHIF8 RecName: Full=DnaA-homolog protein hda
 gi|269849592|sp|P69934|HDA_SHIFL RecName: Full=DnaA-homolog protein hda
 gi|269849593|sp|Q3YZ56|HDA_SHISS RecName: Full=DnaA-homolog protein hda
 gi|226510964|gb|AAC75549.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K-12 substr. MG1655]
 gi|291323679|gb|EFE63107.1| DnaA regulatory inactivator Hda [Escherichia coli B088]
 gi|291428139|gb|EFF01166.1| DNA replication initiation factor [Escherichia coli FVEC1412]
 gi|291471359|gb|EFF13843.1| DnaA regulatory inactivator Hda [Escherichia coli B354]
 gi|298279122|gb|EFI20636.1| DNA replication initiation factor [Escherichia coli FVEC1302]
          Length = 233

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 114 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 173

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 174 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 232


>gi|149198967|ref|ZP_01876008.1| chromosomal replication initiation protein [Lentisphaera araneosa
           HTCC2155]
 gi|149137962|gb|EDM26374.1| chromosomal replication initiation protein [Lentisphaera araneosa
           HTCC2155]
          Length = 470

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 29/212 (13%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR-FSNI----AKSLDSILIDTR 108
           + +   P +    + + G SG GKS L +  + ++ S   +  I    A+   +I ID+ 
Sbjct: 157 KAVSESPGFSFNPLFIYGSSGLGKSHLLHAIAQETLSHNPYHRIEYLSAEEFSNIFIDSI 216

Query: 109 KP---------------VLLEDIDLLDFNDT----QLFHIINSIHQYDSSLLMTARTFPV 149
           K                +LL+D+  L  N T    + FH  N+++  +  +++T+   P 
Sbjct: 217 KNQDGHNFRKRFRNVDILLLDDVQFLK-NKTKTQEEFFHTFNALYSLNKQIVLTSDCQPH 275

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADR-QIFIDKKLAAYIVQRMER 207
                   L SR +   +V +  P+  F  +V I+++  D   + I  ++  +I   ++ 
Sbjct: 276 ELDGLEKRLVSRFEHGQIVDVLKPE--FETRVAILRLKRDSMNVHIPNEVLDFIASNIKS 333

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +   E  + ++   A + G  +  SLA EVL
Sbjct: 334 HIRKLEGALVRLVTYASTMGYEVNVSLAREVL 365


>gi|315223902|ref|ZP_07865748.1| DNA-directed DNA replication initiator protein [Capnocytophaga
           ochracea F0287]
 gi|314946131|gb|EFS98134.1| DNA-directed DNA replication initiator protein [Capnocytophaga
           ochracea F0287]
          Length = 473

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 14/160 (8%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCL-ANIWSDKSRST--RFSNIAKSLDSILIDTRKPVL 112
           +D    +P + V+ V      +  + A+   DK ++T   F +  + +D +++D      
Sbjct: 188 VDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLNDFIHFYQLIDVLIVD------ 241

Query: 113 LEDIDLLDFN-DTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             DI  L     TQ   FHI N +HQ    +++T+   PV        L SR K     +
Sbjct: 242 --DIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQRLLSRFKWGLSAE 299

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           +  PD +   K++   F +    I   + AY+ + +  ++
Sbjct: 300 LQTPDYETRYKILENKFYNDGAEIGDDIIAYLAENIRTNV 339


>gi|187775811|ref|ZP_02798598.2| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4196]
 gi|189405751|ref|ZP_02823873.2| DnaA family protein Hda [Escherichia coli O157:H7 str. EC508]
 gi|194432059|ref|ZP_03064348.1| DnaA family protein Hda [Shigella dysenteriae 1012]
 gi|293415759|ref|ZP_06658402.1| DnaA regulatory inactivator Hda [Escherichia coli B185]
 gi|312967773|ref|ZP_07781988.1| dnaA regulatory inactivator Hda [Escherichia coli 2362-75]
 gi|312973265|ref|ZP_07787437.1| dnaA regulatory inactivator Hda [Escherichia coli 1827-70]
 gi|331658634|ref|ZP_08359578.1| DnaA regulatory inactivator Hda [Escherichia coli TA206]
 gi|331664053|ref|ZP_08364963.1| DnaA regulatory inactivator Hda [Escherichia coli TA143]
 gi|331669238|ref|ZP_08370086.1| DnaA regulatory inactivator Hda [Escherichia coli TA271]
 gi|331684138|ref|ZP_08384734.1| DnaA regulatory inactivator Hda [Escherichia coli H299]
 gi|187770564|gb|EDU34408.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4196]
 gi|189378688|gb|EDU97104.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC508]
 gi|194419588|gb|EDX35668.1| DnaA family protein Hda [Shigella dysenteriae 1012]
 gi|291433407|gb|EFF06386.1| DnaA regulatory inactivator Hda [Escherichia coli B185]
 gi|310331860|gb|EFP99095.1| dnaA regulatory inactivator Hda [Escherichia coli 1827-70]
 gi|312287970|gb|EFR15875.1| dnaA regulatory inactivator Hda [Escherichia coli 2362-75]
 gi|313650956|gb|EFS15356.1| dnaA regulatory inactivator Hda [Shigella flexneri 2a str. 2457T]
 gi|315615739|gb|EFU96371.1| dnaA regulatory inactivator Hda [Escherichia coli 3431]
 gi|320185194|gb|EFW59974.1| Chromosomal replication initiator protein DnaA [Shigella flexneri
           CDC 796-83]
 gi|323156100|gb|EFZ42259.1| dnaA regulatory inactivator Hda [Escherichia coli EPECa14]
 gi|323159349|gb|EFZ45334.1| dnaA regulatory inactivator Hda [Escherichia coli E128010]
 gi|323169062|gb|EFZ54739.1| dnaA regulatory inactivator Hda [Shigella sonnei 53G]
 gi|323170235|gb|EFZ55888.1| dnaA regulatory inactivator Hda [Escherichia coli LT-68]
 gi|323177383|gb|EFZ62971.1| dnaA regulatory inactivator Hda [Escherichia coli 1180]
 gi|323184446|gb|EFZ69821.1| dnaA regulatory inactivator Hda [Escherichia coli 1357]
 gi|323188212|gb|EFZ73505.1| dnaA regulatory inactivator Hda [Escherichia coli RN587/1]
 gi|323936388|gb|EGB32678.1| DnaA regulatory inactivator Hda [Escherichia coli E1520]
 gi|323941245|gb|EGB37430.1| DnaA regulatory inactivator Hda [Escherichia coli E482]
 gi|323944717|gb|EGB40784.1| DnaA regulatory inactivator Hda [Escherichia coli H120]
 gi|323949483|gb|EGB45371.1| DnaA regulatory inactivator Hda [Escherichia coli H252]
 gi|323955733|gb|EGB51491.1| DnaA regulatory inactivator Hda [Escherichia coli H263]
 gi|323961290|gb|EGB56902.1| DnaA regulatory inactivator Hda [Escherichia coli H489]
 gi|323967940|gb|EGB63352.1| DnaA regulatory inactivator Hda [Escherichia coli M863]
 gi|323970981|gb|EGB66230.1| DnaA regulatory inactivator Hda [Escherichia coli TA007]
 gi|323977326|gb|EGB72412.1| DnaA regulatory inactivator Hda [Escherichia coli TW10509]
 gi|324118160|gb|EGC12057.1| DnaA regulatory inactivator Hda [Escherichia coli E1167]
 gi|326344976|gb|EGD68720.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. 1044]
 gi|327252146|gb|EGE63818.1| dnaA regulatory inactivator Hda [Escherichia coli STEC_7v]
 gi|331054299|gb|EGI26326.1| DnaA regulatory inactivator Hda [Escherichia coli TA206]
 gi|331059852|gb|EGI31829.1| DnaA regulatory inactivator Hda [Escherichia coli TA143]
 gi|331064432|gb|EGI36343.1| DnaA regulatory inactivator Hda [Escherichia coli TA271]
 gi|331079090|gb|EGI50292.1| DnaA regulatory inactivator Hda [Escherichia coli H299]
 gi|332089745|gb|EGI94846.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 155-74]
 gi|332092792|gb|EGI97861.1| dnaA regulatory inactivator Hda [Shigella boydii 3594-74]
 gi|332344316|gb|AEE57650.1| DNA-A regulatory inactivation protein [Escherichia coli UMNK88]
 gi|332755140|gb|EGJ85505.1| dnaA regulatory inactivator Hda [Shigella flexneri 4343-70]
 gi|332755541|gb|EGJ85905.1| dnaA regulatory inactivator Hda [Shigella flexneri K-671]
 gi|332756537|gb|EGJ86888.1| dnaA regulatory inactivator Hda [Shigella flexneri 2747-71]
 gi|333001633|gb|EGK21201.1| dnaA regulatory inactivator Hda [Shigella flexneri VA-6]
 gi|333001784|gb|EGK21350.1| dnaA regulatory inactivator Hda [Shigella flexneri K-218]
 gi|333002286|gb|EGK21850.1| dnaA regulatory inactivator Hda [Shigella flexneri K-272]
 gi|333016108|gb|EGK35440.1| dnaA regulatory inactivator Hda [Shigella flexneri K-227]
 gi|333016366|gb|EGK35697.1| dnaA regulatory inactivator Hda [Shigella flexneri K-304]
          Length = 225

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 106 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 165

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 166 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 224


>gi|167957122|ref|ZP_02544196.1| chromosomal replication initiation protein [candidate division TM7
           single-cell isolate TM7c]
          Length = 467

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/136 (19%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           FS+  +++D +++D      ++ I   +    + FH  N +HQ +  +++++   P S  
Sbjct: 222 FSSKYRNVDVLIVDD-----MQFIAGKEKTQEEFFHTFNELHQNNKQIIISSDKPPKSIP 276

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR +    + I +PD +    ++    +   + + ++ A Y+ Q ++ ++   
Sbjct: 277 TLTDRLRSRFEWGMTIDIQMPDFETRCAIVEAKASLSGVELSRETAEYLAQNIKTNIREL 336

Query: 213 EKLVDKMDNLALSRGM 228
           E  ++++  LA  RG+
Sbjct: 337 EGSLNQLLALAEMRGI 352


>gi|164427105|ref|XP_959602.2| hypothetical protein NCU02420 [Neurospora crassa OR74A]
 gi|157071610|gb|EAA30366.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 757

 Score = 35.8 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL
Sbjct: 607 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSL 644


>gi|315644300|ref|ZP_07897470.1| chromosomal replication initiation protein [Paenibacillus vortex
           V453]
 gi|315280675|gb|EFU43964.1| chromosomal replication initiation protein [Paenibacillus vortex
           V453]
          Length = 448

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTA 144
           +R+  F N  +S+D +LID        DI  L   ++   + FH  N++H+    +++++
Sbjct: 195 NRAESFRNKYRSVDILLID--------DIQFLAGKESTQEEFFHTFNALHEERKQIIISS 246

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P         L SR +   +  I  PD +    ++ K      + I  +   YI  +
Sbjct: 247 DRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKAKAENLDIPNEAMMYIANQ 306

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   +      +T  LAAE LK+
Sbjct: 307 IDTNIRELEGALIRVVAYSSLTNQDVTTHLAAEALKD 343


>gi|225560859|gb|EEH09140.1| vacuolar sorting-associated protein [Ajellomyces capsulatus G186AR]
          Length = 843

 Score = 35.8 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S
Sbjct: 587 PARGMLLFGPPGTGKTMLARSVATESHSTFFSVSASSLTS 626


>gi|218548071|ref|YP_002381862.1| DNA replication initiation factor [Escherichia fergusonii ATCC
           35469]
 gi|218355612|emb|CAQ88223.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           fergusonii ATCC 35469]
 gi|324112986|gb|EGC06962.1| DnaA regulatory inactivator Hda [Escherichia fergusonii B253]
 gi|325496474|gb|EGC94333.1| DNA replication initiation factor [Escherichia fergusonii ECD227]
          Length = 241

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 122 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 181

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 182 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 240


>gi|212534472|ref|XP_002147392.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
 gi|210069791|gb|EEA23881.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
          Length = 842

 Score = 35.8 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 584 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 623


>gi|83767415|dbj|BAE57554.1| unnamed protein product [Aspergillus oryzae]
          Length = 743

 Score = 35.8 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 527 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 566


>gi|159462584|ref|XP_001689522.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283510|gb|EDP09260.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 326

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWP----------SWPSRVVILVGPSGSGKSCLANIW 84
           C GI+ DD+    A ++ V+ +  WP            P R ++L GP G+GK+ +    
Sbjct: 24  CGGITWDDIAGQDAAKRLVQEMVVWPMLNPQLFTGARAPPRGLLLFGPPGTGKTLIGKAV 83

Query: 85  SDKSRSTRFSNIAKSLDS 102
           +    +T FS  A SL S
Sbjct: 84  AANICATFFSISASSLTS 101


>gi|158297524|ref|XP_317746.4| AGAP007769-PA [Anopheles gambiae str. PEST]
 gi|157015237|gb|EAA12156.5| AGAP007769-PA [Anopheles gambiae str. PEST]
          Length = 341

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R ++L GP G+GK+ +    + +S+ST FS  A SL S
Sbjct: 99  PPRGILLFGPPGTGKTLIGKCIASQSKSTFFSISASSLTS 138


>gi|325089147|gb|EGC42457.1| vacuolar sorting protein [Ajellomyces capsulatus H88]
          Length = 835

 Score = 35.8 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S
Sbjct: 579 PARGMLLFGPPGTGKTMLARSVATESHSTFFSVSASSLTS 618


>gi|154277946|ref|XP_001539803.1| hypothetical protein HCAG_05270 [Ajellomyces capsulatus NAm1]
 gi|150413388|gb|EDN08771.1| hypothetical protein HCAG_05270 [Ajellomyces capsulatus NAm1]
          Length = 843

 Score = 35.8 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S
Sbjct: 587 PARGMLLFGPPGTGKTMLARSVATESHSTFFSVSASSLTS 626


>gi|304405889|ref|ZP_07387547.1| chromosomal replication initiator protein DnaA [Paenibacillus
           curdlanolyticus YK9]
 gi|304345132|gb|EFM10968.1| chromosomal replication initiator protein DnaA [Paenibacillus
           curdlanolyticus YK9]
          Length = 448

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTA 144
           +R   F N  +++D +LID        DI  L   D    + FH  N++H+    +++++
Sbjct: 195 NRGESFRNKYRNIDVLLID--------DIQFLAGKDGTQEEFFHTFNALHEERKQIIISS 246

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P         L SR +   +  I  PD +    ++ K      + I  +   YI  +
Sbjct: 247 DRTPKEIPTLEERLRSRFEWGLITDIQAPDLETRIAILRKKAKAENLEIPNEAMVYIANQ 306

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   +      I+  LAAE LK+
Sbjct: 307 IDTNIRELEGALIRVVAYSSLINEDISSHLAAEALKD 343


>gi|300981824|ref|ZP_07175756.1| DnaA regulatory inactivator Hda [Escherichia coli MS 45-1]
 gi|300408901|gb|EFJ92439.1| DnaA regulatory inactivator Hda [Escherichia coli MS 45-1]
          Length = 256

 Score = 35.8 bits (81), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 137 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 196

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 197 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 255


>gi|319762113|ref|YP_004126050.1| dnaa regulatory inactivator hda [Alicycliphilus denitrificans BC]
 gi|330826056|ref|YP_004389359.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans K601]
 gi|317116674|gb|ADU99162.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans BC]
 gi|329311428|gb|AEB85843.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans K601]
          Length = 235

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
           DL SRL    V ++ L D+     V+ +    R +F+  ++  Y+++R  R L    +L+
Sbjct: 150 DLRSRLGWGHVFQLHLLDEPARRAVLRQEADARGVFLGDEVMDYMLKRFSRDLGSLVQLL 209

Query: 217 DKMDNLALSRGMGITRSLAAEVLK 240
           D++D+ AL     IT  L   +L+
Sbjct: 210 DRLDSFALRTQRAITIPLLKTMLE 233


>gi|240280590|gb|EER44094.1| vacuolar sorting protein [Ajellomyces capsulatus H143]
          Length = 806

 Score = 35.8 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S
Sbjct: 550 PARGMLLFGPPGTGKTMLARSVATESHSTFFSVSASSLTS 589


>gi|224108347|ref|XP_002314815.1| white-brown-complex ABC transporter family [Populus trichocarpa]
 gi|222863855|gb|EEF00986.1| white-brown-complex ABC transporter family [Populus trichocarpa]
          Length = 660

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 3   LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---DSW 59
           LM +D S   PD +KND   +    +   FP  +  S     +     ++VR +    S 
Sbjct: 25  LMPDDES---PDDEKNDAADDDSPDVGKVFPVTIRWSNITCSLSDKSSKSVRFLLNNVSG 81

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDK 87
            + P R++ ++GPSGSGK+ L N+ + +
Sbjct: 82  EAKPGRLLAIMGPSGSGKTTLLNVLAGQ 109


>gi|71424343|ref|XP_812762.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|71650858|ref|XP_814118.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70877582|gb|EAN90911.1| hypothetical protein, conserved [Trypanosoma cruzi]
 gi|70879064|gb|EAN92267.1| hypothetical protein, conserved [Trypanosoma cruzi]
 gi|322829261|gb|EFZ32725.1| hypothetical protein TCSYLVIO_922 [Trypanosoma cruzi]
          Length = 281

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 8/57 (14%)

Query: 67  VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLED 115
           V+++GP+GSGKS L  +    ++ K RST   N   + + +     ID R+ + LED
Sbjct: 6   VVVIGPAGSGKSTLCTVVAEHYATKGRSTHICNFDPAAEDLPYDPSIDIRELISLED 62


>gi|169622581|ref|XP_001804699.1| hypothetical protein SNOG_14515 [Phaeosphaeria nodorum SN15]
 gi|111056935|gb|EAT78055.1| hypothetical protein SNOG_14515 [Phaeosphaeria nodorum SN15]
          Length = 825

 Score = 35.8 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST F+  A SL S
Sbjct: 569 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTS 608


>gi|227831831|ref|YP_002833538.1| chromosomal replication initiator protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183095|ref|ZP_06042516.1| chromosomal replication initiation protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|254777897|sp|C3PE72|DNAA_CORA7 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|227452847|gb|ACP31600.1| chromosomal replication initiator protein [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 546

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145
           R   F    ++LD +++D        DI  L+  ++   + FH  N++HQ +  +++++ 
Sbjct: 292 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 343

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L +R +   +  I  PD +    +++K  +     +D+ +   I  R 
Sbjct: 344 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKASADGTDVDRSVLELIASRF 403

Query: 206 ERSL 209
           E S+
Sbjct: 404 ESSI 407


>gi|320588326|gb|EFX00795.1| aaa family ATPase [Grosmannia clavigera kw1407]
          Length = 846

 Score = 35.8 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+  ++L GP G+GK+ LA   + +SRST FS  A SL S
Sbjct: 591 PATGMLLFGPPGTGKTMLARAVATESRSTFFSISASSLTS 630


>gi|242790258|ref|XP_002481526.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718114|gb|EED17534.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 842

 Score = 35.8 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 584 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 623


>gi|332971204|gb|EGK10167.1| DNA-directed DNA replication initiator protein DnaA [Desmospora sp.
           8437]
          Length = 460

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTA 144
           +R+  F N  +++D +LID        DI  L   +    + FH  N++H     +++++
Sbjct: 206 NRADDFRNRYRNVDILLID--------DIQFLAGKEQTQEEFFHTFNALHGESKQIVISS 257

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV----KMFADRQIFIDKKLAAY 200
              P +       L SR +   +  I  PD   LE  I     K  AD     + ++ A+
Sbjct: 258 DRPPKAIPTLEDRLRSRFEWGLITDIQPPD---LETRIAILRKKAIADNLEINNSEVMAF 314

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           I  R+E ++   E  + ++   +      +T  LAAE LK+
Sbjct: 315 IADRVETNIRELEGALIRVVAYSALTNQPVTVELAAEALKD 355


>gi|300922203|ref|ZP_07138339.1| DnaA regulatory inactivator Hda [Escherichia coli MS 182-1]
 gi|300421442|gb|EFK04753.1| DnaA regulatory inactivator Hda [Escherichia coli MS 182-1]
 gi|324020097|gb|EGB89316.1| DnaA regulatory inactivator Hda [Escherichia coli MS 117-3]
          Length = 257

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 138 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 197

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 198 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256


>gi|116070875|ref|ZP_01468144.1| chromosomal replication initiation protein [Synechococcus sp.
           BL107]
 gi|116066280|gb|EAU72037.1| chromosomal replication initiation protein [Synechococcus sp.
           BL107]
          Length = 474

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 5/152 (3%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           F +  ++ D IL+D      ++ I+  ++   + FH  N++H+    +++ +   P    
Sbjct: 225 FRDRYRAADLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIP 279

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR +   +  I  PD +    ++ K     ++ + + L  YI  R   ++   
Sbjct: 280 RLQQRLISRFQMGLIADIQSPDLETRMAILQKKAEQERMALPRDLIQYIAGRFTSNIREL 339

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           E  + +    A   G+ +T    A +L  T Q
Sbjct: 340 EGALTRAVAFASITGLPMTVESVAPMLDPTGQ 371


>gi|56459113|ref|YP_154394.1| DNA replication initiation ATPase [Idiomarina loihiensis L2TR]
 gi|61212492|sp|Q5QY39|DNAA_IDILO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56178123|gb|AAV80845.1| ATPase involved in DNA replication initiation [Idiomarina
           loihiensis L2TR]
          Length = 454

 Score = 35.8 bits (81), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 13/158 (8%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTA 144
           S +  F    +S+D++LID        DI        +  + FH  N++ + +  ++MT+
Sbjct: 204 SSTNEFKRYYRSVDALLID--------DIHFFANKKGSQEEFFHTFNALLEGNQQIIMTS 255

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
             +P         L SR      + I  P+ +    ++++   +R + +  ++A +I +R
Sbjct: 256 DLYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKADERGLHMPHEVAFFIAKR 315

Query: 205 MERSLVFAEKLVDK-MDNLALSRGMGITRSLAAEVLKE 241
           +  ++   E  +++ + N+ L+ G  IT     E L++
Sbjct: 316 LRSNVRELEGALNRVVANVQLT-GRPITIDFVREALRD 352


>gi|257865352|ref|ZP_05645005.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC30]
 gi|257871682|ref|ZP_05651335.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC10]
 gi|257799286|gb|EEV28338.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC30]
 gi|257805846|gb|EEV34668.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC10]
          Length = 350

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 36/51 (70%)

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           D + AAY+++++++ + + E ++D  D+++++  +GI +    E+L++TQ+
Sbjct: 280 DAQAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIAQRQKGELLQQTQE 330


>gi|255323604|ref|ZP_05364734.1| chromosomal replication initiator protein DnaA [Campylobacter
           showae RM3277]
 gi|255299318|gb|EET78605.1| chromosomal replication initiator protein DnaA [Campylobacter
           showae RM3277]
          Length = 436

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFP 148
           RF    ++ D +LID        D+  L   D    + FH  N +H  +  ++MT+   P
Sbjct: 188 RFREKYRNCDVLLID--------DVQFLGKTDKIQEEFFHTFNELHAKNGQIVMTSDRQP 239

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L +R +   +  I+ P+ D    +I K     +I++DK +  YI   M  +
Sbjct: 240 KLLKGFEDRLRTRFEWGIIADITPPELDTKIAIIKKKCEFDKIYLDKDVINYIATNMGDN 299

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E  +  ++  A      IT   A  +L++
Sbjct: 300 IREIESAIINLNAYARLMRQEITLEFAKNILRD 332


>gi|192359033|ref|YP_001980525.1| chromosomal replication initiation protein [Cellvibrio japonicus
           Ueda107]
 gi|190685198|gb|ACE82876.1| chromosomal replication initiator protein DnaA [Cellvibrio
           japonicus Ueda107]
          Length = 534

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 11/152 (7%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
           F    +S+D++LID        DI      + +  + FH  NS+ +    +++T   FP 
Sbjct: 289 FKRYYRSMDALLID--------DIQFFAGKERSQEEFFHTFNSLLEGGRQIILTCDRFPK 340

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L SR      V +  P+ +    +++K      I +  + A +I QR+  ++
Sbjct: 341 EINGLEERLKSRFGWGLTVAVEPPELETRVAILIKKAEQANIDLPHEAAFFIAQRIRANV 400

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              E  + ++   A   G  I   L  E LK+
Sbjct: 401 RDLEGALKRVIASANFTGRSIDVELVREALKD 432


>gi|159897963|ref|YP_001544210.1| ATPase central domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891002|gb|ABX04082.1| AAA ATPase central domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 416

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 48/182 (26%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAV-----RLIDSWPSWPS------RVVILVGP 72
           K ++L+++       S D+L++   ++Q +     R  +S  ++        R +ILVGP
Sbjct: 152 KSQELYYAIKNA---SLDNLILPGTLKQDIFRDLQRFFESKATYEHYNIAWKRGIILVGP 208

Query: 73  SGSGKS-------------CLANIWSDKSRSTRFSNIA----------------KSLDSI 103
            G+GK+             CL     D   ST  +NI                 + LDS+
Sbjct: 209 PGNGKTHMIKGLLNALDYPCLYVKSFDAQYSTNNANIRAVFDRARRSAPCIVVLEDLDSL 268

Query: 104 LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           + DT +   L ++D   FN  Q   L    N     D +++     F   +   LP+L  
Sbjct: 269 INDTNRAFFLNEVD--GFNANQGVVLLATTNHPEDIDPAIMNRPSRFDRKYYFSLPELAE 326

Query: 161 RL 162
           RL
Sbjct: 327 RL 328


>gi|257874944|ref|ZP_05654597.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC20]
 gi|257809110|gb|EEV37930.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC20]
          Length = 350

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 36/51 (70%)

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           D + AAY+++++++ + + E ++D  D+++++  +GI +    E+L++TQ+
Sbjct: 280 DAQAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIAQRQKGELLQQTQE 330


>gi|225021815|ref|ZP_03711007.1| hypothetical protein CORMATOL_01845 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945511|gb|EEG26720.1| hypothetical protein CORMATOL_01845 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 566

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 16/73 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P  +  LVGPSGSGKS LA + +      RF ++A+   SI            +D+ D  
Sbjct: 351 PGTITALVGPSGSGKSTLAKLLA------RFYDVAEGTISI----------AGVDVRDIA 394

Query: 123 DTQLFHIINSIHQ 135
             +L+  I  + Q
Sbjct: 395 TDELYRTIGMVFQ 407


>gi|329119305|ref|ZP_08247992.1| DnaA regulatory inactivator Hda [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464652|gb|EGF10950.1| DnaA regulatory inactivator Hda [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 222

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 12/168 (7%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            R V + G +G+GKS L   W+   ++ R    A+ +D+  +      L  +   +D  D
Sbjct: 36  ERFVYVWGAAGTGKSHLLRAWA--GQAARQGADARYIDAKTMPLDASALEAEYLAVDQAD 93

Query: 124 -------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                    LF I N         L+ +   P +      DL +R+    V  I    D+
Sbjct: 94  RLKPAEQALLFEIFNRFRNSGRGRLLLSADLPPAQLAVREDLRTRMGYCLVYDIKPLSDE 153

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
                +  M   RQ+ +D+ +  Y++   +R +   + LV  +D L L
Sbjct: 154 EKIAALTGMARARQLDLDEGIFRYLLNYWQRDM---DSLVKMLDTLCL 198


>gi|312218275|emb|CBX98221.1| hypothetical protein [Leptosphaeria maculans]
          Length = 803

 Score = 35.8 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST F+  A SL S
Sbjct: 548 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTS 587


>gi|300903508|ref|ZP_07121433.1| DnaA regulatory inactivator Hda [Escherichia coli MS 84-1]
 gi|300930133|ref|ZP_07145555.1| DnaA regulatory inactivator Hda [Escherichia coli MS 187-1]
 gi|300404540|gb|EFJ88078.1| DnaA regulatory inactivator Hda [Escherichia coli MS 84-1]
 gi|300461977|gb|EFK25470.1| DnaA regulatory inactivator Hda [Escherichia coli MS 187-1]
 gi|315300454|gb|EFU59684.1| DnaA regulatory inactivator Hda [Escherichia coli MS 16-3]
          Length = 255

 Score = 35.8 bits (81), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 136 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 195

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 196 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 254


>gi|300951801|ref|ZP_07165615.1| DnaA regulatory inactivator Hda [Escherichia coli MS 116-1]
 gi|301024719|ref|ZP_07188362.1| DnaA regulatory inactivator Hda [Escherichia coli MS 69-1]
 gi|300396450|gb|EFJ79988.1| DnaA regulatory inactivator Hda [Escherichia coli MS 69-1]
 gi|300448964|gb|EFK12584.1| DnaA regulatory inactivator Hda [Escherichia coli MS 116-1]
          Length = 256

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 137 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 196

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 197 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 255


>gi|156050767|ref|XP_001591345.1| hypothetical protein SS1G_07971 [Sclerotinia sclerotiorum 1980]
 gi|154692371|gb|EDN92109.1| hypothetical protein SS1G_07971 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 750

 Score = 35.8 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL
Sbjct: 639 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSL 676


>gi|313205512|ref|YP_004044689.1| chromosomal replication initiator protein dnaa [Riemerella
           anatipestifer DSM 15868]
 gi|312444828|gb|ADQ81183.1| chromosomal replication initiator protein DnaA [Riemerella
           anatipestifer DSM 15868]
 gi|315023384|gb|EFT36394.1| Chromosomal replication initiator protein dnaA [Riemerella
           anatipestifer RA-YM]
 gi|325335056|gb|ADZ11330.1| DnaA [Riemerella anatipestifer RA-GD]
          Length = 492

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQ--LFHIINSI 133
           K+  +N  +  SR   F+N  K LD +++D        DI  L     TQ   FHI + +
Sbjct: 232 KAANSNRGNANSRED-FANFYKMLDVLIVD--------DIQFLSGKRATQDSFFHIFDYL 282

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
           HQ    +++T+   P         + SR K     +I  PD D   K+IV
Sbjct: 283 HQNGKQIILTSDKAPADIMDIEERVVSRFKWGLTAEIKSPDYDTRRKIIV 332


>gi|47525234|ref|YP_016331.1| chromosomal replication initiation protein [Geobacter
           sulfurreducens PCA]
 gi|61212658|sp|Q74GG6|DNAA_GEOSL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|41152665|gb|AAR99581.1| chromosomal replication initiator protein DnaA [Geobacter
           sulfurreducens PCA]
 gi|298504141|gb|ADI82864.1| chromosomal replication initiator protein DnaA [Geobacter
           sulfurreducens KN400]
          Length = 445

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F N  + +D +LID        DI  +   +    + FH  NS+++    +++T+  FP
Sbjct: 199 QFRNKFRKMDILLID--------DIQFIAGKERTQEEFFHTFNSLYESHKQIVVTSDKFP 250

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR +   +  I  PD +    ++ K      I +   +A ++      +
Sbjct: 251 KDIPGLEERLRSRFEWGLIADIQAPDTETKVAILRKKADADHISLPDDVALFLASSSTTN 310

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E ++ ++  ++   G  IT  +A EVLK+
Sbjct: 311 VRELEGMLIRLGAVSSLTGKNITLDMAREVLKD 343


>gi|315053797|ref|XP_003176273.1| hypothetical protein MGYG_00361 [Arthroderma gypseum CBS 118893]
 gi|311338119|gb|EFQ97321.1| hypothetical protein MGYG_00361 [Arthroderma gypseum CBS 118893]
          Length = 833

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 577 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLAS 616


>gi|33152000|ref|NP_873353.1| chromosomal replication initiator protein [Haemophilus ducreyi
           35000HP]
 gi|61212729|sp|Q7VMW1|DNAA_HAEDU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|33148222|gb|AAP95742.1| chromosomal replication initiator protein [Haemophilus ducreyi
           35000HP]
          Length = 448

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 25/130 (19%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
           F    +SLD ++ID        DI      + +  + FH  NS+ + +  +++ +  FP 
Sbjct: 203 FKKFYRSLDVLMID--------DIQFFAKKEASQEEFFHTFNSLFERNKQIILASDHFPK 254

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           +       + SRL       I  P+ +    +++K   +R + + +++A Y+ Q++  ++
Sbjct: 255 NIENIEERIKSRLNWGVSTAIEPPELETRVAILMKKAEERNVELPEEVAFYLGQKLRTNV 314

Query: 210 VFAEKLVDKM 219
              E  ++++
Sbjct: 315 RELEGAINRV 324


>gi|260434926|ref|ZP_05788896.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           WH 8109]
 gi|260412800|gb|EEX06096.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           WH 8109]
          Length = 465

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 5/152 (3%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           F +  ++ D IL+D      ++ I+  ++   + FH  N++H+    +++ +   P    
Sbjct: 216 FRDRYRAADLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIP 270

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR +   +  I  PD +    ++ K     ++ + + L  YI  R   ++   
Sbjct: 271 RLQQRLISRFQMGLIADIQSPDLETRMAILQKKAEQERMSLPRDLIQYIAGRFTSNIREL 330

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           E  + +    A   G+ +T    A +L  T Q
Sbjct: 331 EGALTRAVAFASITGLPMTVESVAPMLDPTGQ 362


>gi|238021029|ref|ZP_04601455.1| hypothetical protein GCWU000324_00926 [Kingella oralis ATCC 51147]
 gi|237868009|gb|EEP69015.1| hypothetical protein GCWU000324_00926 [Kingella oralis ATCC 51147]
          Length = 223

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 19/189 (10%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS------------RSTRFSNIAKSLDSILIDTRKPVL 112
           + + + G  GSGKS +   W  ++             +T  ++ A   D + ID      
Sbjct: 37  QFLYIWGEQGSGKSHILQAWVGQALQNWQTAVYIDAGTTPLTDSAVQADFVAIDQ----- 91

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +E ++  D     LF+I N         L+ +   P S      DL +R+      ++  
Sbjct: 92  IEKLN--DAEQATLFYIFNHFRNSKHGHLLLSADTPPSKLHLREDLRTRMAYCLAYEVKS 149

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
              +     +  M   RQ+ ID  +  Y++    + L     + + + N ++S+G  IT 
Sbjct: 150 LSREEKITALTNMAKTRQLNIDPGIYQYLLDHWRQDLGSLITMFNDLANYSISQGKPITL 209

Query: 233 SLAAEVLKE 241
            L   +LK+
Sbjct: 210 PLLRRLLKQ 218


>gi|82777875|ref|YP_404224.1| DNA replication initiation factor [Shigella dysenteriae Sd197]
 gi|81242023|gb|ABB62733.1| putative DNA replication factor [Shigella dysenteriae Sd197]
          Length = 248

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 129 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 188

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 189 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 247


>gi|15803019|ref|NP_289049.1| DNA replication initiation factor [Escherichia coli O157:H7 EDL933]
 gi|15832612|ref|NP_311385.1| DNA replication initiation factor [Escherichia coli O157:H7 str.
           Sakai]
 gi|24113824|ref|NP_708334.1| DNA replication initiation factor [Shigella flexneri 2a str. 301]
 gi|26248855|ref|NP_754895.1| DNA replication initiation factor [Escherichia coli CFT073]
 gi|30063870|ref|NP_838041.1| DNA replication initiation factor [Shigella flexneri 2a str. 2457T]
 gi|74313022|ref|YP_311441.1| DNA replication initiation factor [Shigella sonnei Ss046]
 gi|82544943|ref|YP_408890.1| DNA replication initiation factor [Shigella boydii Sb227]
 gi|89109302|ref|AP_003082.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K-12 substr. W3110]
 gi|91211817|ref|YP_541803.1| DNA replication initiation factor [Escherichia coli UTI89]
 gi|110642658|ref|YP_670388.1| DNA replication initiation factor [Escherichia coli 536]
 gi|110806426|ref|YP_689946.1| DNA replication initiation factor [Shigella flexneri 5 str. 8401]
 gi|117624680|ref|YP_853593.1| DNA replication initiation factor [Escherichia coli APEC O1]
 gi|157158460|ref|YP_001463818.1| DNA replication initiation factor [Escherichia coli E24377A]
 gi|157161957|ref|YP_001459275.1| DNA replication initiation factor [Escherichia coli HS]
 gi|168748446|ref|ZP_02773468.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4113]
 gi|168756267|ref|ZP_02781274.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4401]
 gi|168761104|ref|ZP_02786111.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4501]
 gi|168768587|ref|ZP_02793594.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4486]
 gi|168778461|ref|ZP_02803468.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4076]
 gi|168787841|ref|ZP_02812848.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC869]
 gi|170019220|ref|YP_001724174.1| DNA replication initiation factor [Escherichia coli ATCC 8739]
 gi|170082106|ref|YP_001731426.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170684093|ref|YP_001744679.1| DNA replication initiation factor [Escherichia coli SMS-3-5]
 gi|187733723|ref|YP_001881287.1| DNA replication initiation factor [Shigella boydii CDC 3083-94]
 gi|188495904|ref|ZP_03003174.1| DnaA family protein Hda [Escherichia coli 53638]
 gi|191169203|ref|ZP_03030958.1| DnaA family protein Hda [Escherichia coli B7A]
 gi|191172946|ref|ZP_03034481.1| DnaA family protein Hda [Escherichia coli F11]
 gi|193064697|ref|ZP_03045775.1| DnaA family protein Hda [Escherichia coli E22]
 gi|193068417|ref|ZP_03049380.1| DnaA family protein Hda [Escherichia coli E110019]
 gi|194427342|ref|ZP_03059892.1| DnaA family protein Hda [Escherichia coli B171]
 gi|194437674|ref|ZP_03069770.1| DnaA family protein Hda [Escherichia coli 101-1]
 gi|195936639|ref|ZP_03082021.1| DNA replication initiation factor [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808962|ref|ZP_03251299.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4206]
 gi|208813090|ref|ZP_03254419.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4045]
 gi|208820209|ref|ZP_03260529.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4042]
 gi|209400783|ref|YP_002271965.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4115]
 gi|209919973|ref|YP_002294057.1| DNA replication initiation factor [Escherichia coli SE11]
 gi|215487788|ref|YP_002330219.1| DNA replication initiation factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327019|ref|ZP_03443102.1| DnaA family protein Hda [Escherichia coli O157:H7 str. TW14588]
 gi|218555021|ref|YP_002387934.1| DNA replication initiation factor [Escherichia coli IAI1]
 gi|218559420|ref|YP_002392333.1| DNA replication initiation factor [Escherichia coli S88]
 gi|218690611|ref|YP_002398823.1| DNA replication initiation factor [Escherichia coli ED1a]
 gi|218696123|ref|YP_002403790.1| DNA replication initiation factor [Escherichia coli 55989]
 gi|218700953|ref|YP_002408582.1| DNA replication initiation factor [Escherichia coli IAI39]
 gi|218705995|ref|YP_002413514.1| DNA replication initiation factor [Escherichia coli UMN026]
 gi|227887525|ref|ZP_04005330.1| DNA replication initiation protein A [Escherichia coli 83972]
 gi|237705002|ref|ZP_04535483.1| DNA replication initiation factor [Escherichia sp. 3_2_53FAA]
 gi|238901661|ref|YP_002927457.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli BW2952]
 gi|253772612|ref|YP_003035443.1| DNA replication initiation factor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162470|ref|YP_003045578.1| DNA replication initiation factor [Escherichia coli B str. REL606]
 gi|254794441|ref|YP_003079278.1| DNA replication initiation factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017356|ref|ZP_05431221.1| DNA replication initiation factor [Shigella sp. D9]
 gi|256021818|ref|ZP_05435683.1| DNA replication initiation factor [Escherichia sp. 4_1_40B]
 gi|260845126|ref|YP_003222904.1| ATPase regulatory factor Hda [Escherichia coli O103:H2 str. 12009]
 gi|260856590|ref|YP_003230481.1| ATPase regulatory factor Hda [Escherichia coli O26:H11 str. 11368]
 gi|261223071|ref|ZP_05937352.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261259377|ref|ZP_05951910.1| ATPase regulatory factor Hda [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283716|ref|YP_003500534.1| DnaA-like protein hda [Escherichia coli O55:H7 str. CB9615]
 gi|300817738|ref|ZP_07097953.1| DnaA regulatory inactivator Hda [Escherichia coli MS 107-1]
 gi|300820837|ref|ZP_07100987.1| DnaA regulatory inactivator Hda [Escherichia coli MS 119-7]
 gi|300921429|ref|ZP_07137789.1| DnaA regulatory inactivator Hda [Escherichia coli MS 115-1]
 gi|301023882|ref|ZP_07187613.1| DnaA regulatory inactivator Hda [Escherichia coli MS 196-1]
 gi|301302849|ref|ZP_07208977.1| DnaA regulatory inactivator Hda [Escherichia coli MS 124-1]
 gi|306814438|ref|ZP_07448600.1| DNA replication initiation factor [Escherichia coli NC101]
 gi|307139130|ref|ZP_07498486.1| DNA replication initiation factor [Escherichia coli H736]
 gi|307312510|ref|ZP_07592143.1| DnaA regulatory inactivator Hda [Escherichia coli W]
 gi|309794460|ref|ZP_07688883.1| DnaA regulatory inactivator Hda [Escherichia coli MS 145-7]
 gi|331643113|ref|ZP_08344248.1| DnaA regulatory inactivator Hda [Escherichia coli H736]
 gi|331648141|ref|ZP_08349231.1| DnaA regulatory inactivator Hda [Escherichia coli M605]
 gi|331653921|ref|ZP_08354922.1| DnaA regulatory inactivator Hda [Escherichia coli M718]
 gi|331673947|ref|ZP_08374710.1| DnaA regulatory inactivator Hda [Escherichia coli TA280]
 gi|331678483|ref|ZP_08379158.1| DnaA regulatory inactivator Hda [Escherichia coli H591]
 gi|332278353|ref|ZP_08390766.1| DnaA family protein Hda [Shigella sp. D9]
 gi|12516884|gb|AAG57606.1|AE005479_4 putative DNA replication factor [Escherichia coli O157:H7 str.
           EDL933]
 gi|26109261|gb|AAN81463.1|AE016764_145 Hypothetical protein yfgE [Escherichia coli CFT073]
 gi|13362828|dbj|BAB36781.1| putative DNA replication factor [Escherichia coli O157:H7 str.
           Sakai]
 gi|24052912|gb|AAN44041.1| putative DNA replication factor [Shigella flexneri 2a str. 301]
 gi|30042125|gb|AAP17851.1| putative DNA replication factor [Shigella flexneri 2a str. 2457T]
 gi|73856499|gb|AAZ89206.1| putative DNA replication factor [Shigella sonnei Ss046]
 gi|81246354|gb|ABB67062.1| putative DNA replication factor [Shigella boydii Sb227]
 gi|85675427|dbj|BAA16384.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K12 substr. W3110]
 gi|91073391|gb|ABE08272.1| putative DNA replication factor [Escherichia coli UTI89]
 gi|110344250|gb|ABG70487.1| hypothetical protein YfgE [Escherichia coli 536]
 gi|110615974|gb|ABF04641.1| putative DNA replication factor [Shigella flexneri 5 str. 8401]
 gi|115513804|gb|ABJ01879.1| DNA replication initiation factor [Escherichia coli APEC O1]
 gi|157067637|gb|ABV06892.1| DnaA family protein Hda [Escherichia coli HS]
 gi|157080490|gb|ABV20198.1| DnaA family protein Hda [Escherichia coli E24377A]
 gi|169754148|gb|ACA76847.1| DnaA regulatory inactivator Hda [Escherichia coli ATCC 8739]
 gi|169889941|gb|ACB03648.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170521811|gb|ACB19989.1| DnaA family protein Hda [Escherichia coli SMS-3-5]
 gi|187430715|gb|ACD09989.1| DnaA family protein Hda [Shigella boydii CDC 3083-94]
 gi|188017019|gb|EDU55141.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4113]
 gi|188491103|gb|EDU66206.1| DnaA family protein Hda [Escherichia coli 53638]
 gi|189003293|gb|EDU72279.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4076]
 gi|189356555|gb|EDU74974.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4401]
 gi|189362259|gb|EDU80678.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4486]
 gi|189368411|gb|EDU86827.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4501]
 gi|189372386|gb|EDU90802.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC869]
 gi|190900748|gb|EDV60542.1| DnaA family protein Hda [Escherichia coli B7A]
 gi|190906810|gb|EDV66414.1| DnaA family protein Hda [Escherichia coli F11]
 gi|192927580|gb|EDV82196.1| DnaA family protein Hda [Escherichia coli E22]
 gi|192958369|gb|EDV88809.1| DnaA family protein Hda [Escherichia coli E110019]
 gi|194414663|gb|EDX30935.1| DnaA family protein Hda [Escherichia coli B171]
 gi|194423480|gb|EDX39471.1| DnaA family protein Hda [Escherichia coli 101-1]
 gi|208728763|gb|EDZ78364.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4206]
 gi|208734367|gb|EDZ83054.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4045]
 gi|208740332|gb|EDZ88014.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4042]
 gi|209162183|gb|ACI39616.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4115]
 gi|209763558|gb|ACI80091.1| putative DNA replication factor [Escherichia coli]
 gi|209763560|gb|ACI80092.1| putative DNA replication factor [Escherichia coli]
 gi|209763562|gb|ACI80093.1| putative DNA replication factor [Escherichia coli]
 gi|209763564|gb|ACI80094.1| putative DNA replication factor [Escherichia coli]
 gi|209763566|gb|ACI80095.1| putative DNA replication factor [Escherichia coli]
 gi|209913232|dbj|BAG78306.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215265860|emb|CAS10269.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217319386|gb|EEC27811.1| DnaA family protein Hda [Escherichia coli O157:H7 str. TW14588]
 gi|218352855|emb|CAU98654.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli 55989]
 gi|218361789|emb|CAQ99388.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli IAI1]
 gi|218366189|emb|CAR03935.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli S88]
 gi|218370939|emb|CAR18760.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli IAI39]
 gi|218428175|emb|CAR09089.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli ED1a]
 gi|218433092|emb|CAR13987.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli UMN026]
 gi|222034204|emb|CAP76945.1| DnaA-homolog protein hda [Escherichia coli LF82]
 gi|226901368|gb|EEH87627.1| DNA replication initiation factor [Escherichia sp. 3_2_53FAA]
 gi|227835875|gb|EEJ46341.1| DNA replication initiation protein A [Escherichia coli 83972]
 gi|238860037|gb|ACR62035.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli BW2952]
 gi|242378094|emb|CAQ32867.1| regulator of DnaA that prevents premature reinitiation of DNA
           replication [Escherichia coli BL21(DE3)]
 gi|253323656|gb|ACT28258.1| DnaA regulatory inactivator Hda [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974371|gb|ACT40042.1| DNA replication initiation factor [Escherichia coli B str. REL606]
 gi|253978538|gb|ACT44208.1| DNA replication initiation factor [Escherichia coli BL21(DE3)]
 gi|254593841|gb|ACT73202.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli O157:H7 str. TW14359]
 gi|257755239|dbj|BAI26741.1| ATPase regulatory factor Hda [Escherichia coli O26:H11 str. 11368]
 gi|257760273|dbj|BAI31770.1| ATPase regulatory factor Hda [Escherichia coli O103:H2 str. 12009]
 gi|260448425|gb|ACX38847.1| DnaA regulatory inactivator Hda [Escherichia coli DH1]
 gi|281179547|dbj|BAI55877.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|281601897|gb|ADA74881.1| DnaA-like protein hda [Shigella flexneri 2002017]
 gi|284922443|emb|CBG35530.1| DnaA-homolog protein [Escherichia coli 042]
 gi|290763589|gb|ADD57550.1| DnaA-like protein hda [Escherichia coli O55:H7 str. CB9615]
 gi|294493697|gb|ADE92453.1| DnaA family protein Hda [Escherichia coli IHE3034]
 gi|299880636|gb|EFI88847.1| DnaA regulatory inactivator Hda [Escherichia coli MS 196-1]
 gi|300411663|gb|EFJ94973.1| DnaA regulatory inactivator Hda [Escherichia coli MS 115-1]
 gi|300526590|gb|EFK47659.1| DnaA regulatory inactivator Hda [Escherichia coli MS 119-7]
 gi|300529726|gb|EFK50788.1| DnaA regulatory inactivator Hda [Escherichia coli MS 107-1]
 gi|300841784|gb|EFK69544.1| DnaA regulatory inactivator Hda [Escherichia coli MS 124-1]
 gi|305851832|gb|EFM52284.1| DNA replication initiation factor [Escherichia coli NC101]
 gi|306907433|gb|EFN37937.1| DnaA regulatory inactivator Hda [Escherichia coli W]
 gi|307554516|gb|ADN47291.1| DnaA family protein Hda [Escherichia coli ABU 83972]
 gi|307625952|gb|ADN70256.1| DNA replication initiation factor [Escherichia coli UM146]
 gi|308121916|gb|EFO59178.1| DnaA regulatory inactivator Hda [Escherichia coli MS 145-7]
 gi|309702774|emb|CBJ02105.1| DnaA-homolog protein [Escherichia coli ETEC H10407]
 gi|312947069|gb|ADR27896.1| DNA replication initiation factor [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315061814|gb|ADT76141.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli W]
 gi|315137119|dbj|BAJ44278.1| DnaA-like protein hda [Escherichia coli DH1]
 gi|315256513|gb|EFU36481.1| DnaA regulatory inactivator Hda [Escherichia coli MS 85-1]
 gi|320176256|gb|EFW51317.1| Chromosomal replication initiator protein DnaA [Shigella
           dysenteriae CDC 74-1112]
 gi|320180482|gb|EFW55413.1| Chromosomal replication initiator protein DnaA [Shigella boydii
           ATCC 9905]
 gi|320188828|gb|EFW63487.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC1212]
 gi|320196328|gb|EFW70952.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           WV_060327]
 gi|320200057|gb|EFW74646.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           EC4100B]
 gi|320641000|gb|EFX10484.1| DNA replication initiation factor [Escherichia coli O157:H7 str.
           G5101]
 gi|320646282|gb|EFX15209.1| DNA replication initiation factor [Escherichia coli O157:H- str.
           493-89]
 gi|320651787|gb|EFX20167.1| DNA replication initiation factor [Escherichia coli O157:H- str. H
           2687]
 gi|320657173|gb|EFX24982.1| DNA replication initiation factor [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662779|gb|EFX30111.1| DNA replication initiation factor [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667583|gb|EFX34498.1| DNA replication initiation factor [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323377605|gb|ADX49873.1| DnaA regulatory inactivator Hda [Escherichia coli KO11]
 gi|326340291|gb|EGD64095.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. 1125]
 gi|330912266|gb|EGH40776.1| chromosomal replication initiator protein DnaA [Escherichia coli
           AA86]
 gi|331039911|gb|EGI12131.1| DnaA regulatory inactivator Hda [Escherichia coli H736]
 gi|331043001|gb|EGI15141.1| DnaA regulatory inactivator Hda [Escherichia coli M605]
 gi|331048770|gb|EGI20846.1| DnaA regulatory inactivator Hda [Escherichia coli M718]
 gi|331069220|gb|EGI40612.1| DnaA regulatory inactivator Hda [Escherichia coli TA280]
 gi|331074943|gb|EGI46263.1| DnaA regulatory inactivator Hda [Escherichia coli H591]
 gi|332100705|gb|EGJ04051.1| DnaA family protein Hda [Shigella sp. D9]
 gi|332766306|gb|EGJ96516.1| dnaA regulatory inactivator Hda [Shigella flexneri 2930-71]
          Length = 248

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 129 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 188

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 189 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 247


>gi|320449107|ref|YP_004201203.1| chromosomal replication initiator protein DnaA [Thermus scotoductus
           SA-01]
 gi|320149276|gb|ADW20654.1| chromosomal replication initiator protein DnaA [Thermus scotoductus
           SA-01]
          Length = 447

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 17/157 (10%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145
           R T F    +S+D +L+D        DI  +   +    + FH  N++++    +++++ 
Sbjct: 199 RMTEFRERYRSVDLLLVD--------DIQFIAGKERTQEEFFHTFNALYEAHKQIILSSD 250

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFAD-RQIFIDKKLAAYIV 202
             P         L SR +   +  I  PD   LE    I+KM A+ R + I +++  YI 
Sbjct: 251 RPPKDILTLEARLRSRFEWGLITDIQPPD---LETRIAILKMNAEQRGLRISEEVLEYIA 307

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +++  ++   E  + +    A   G+ +TR++AA+ L
Sbjct: 308 RQVTSNIRELEGALMRTIAYASLNGVELTRAVAAKAL 344


>gi|317049103|ref|YP_004116751.1| DnaA regulatory inactivator Hda [Pantoea sp. At-9b]
 gi|316950720|gb|ADU70195.1| DnaA regulatory inactivator Hda [Pantoea sp. At-9b]
          Length = 235

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + ++  L DDD L+ 
Sbjct: 116 EMAIFDLYNRILEIGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYRLQPLSDDDKLQA 175

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + ++    R   + + +  ++++R++R +      +D++D  ++S    +T     E L
Sbjct: 176 MQLRA-GIRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDRASISAQRKLTIPFVKEAL 233


>gi|149378301|ref|ZP_01896010.1| ABC transporter related protein [Marinobacter algicola DG893]
 gi|149357408|gb|EDM45921.1| ABC transporter related protein [Marinobacter algicola DG893]
          Length = 274

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 21/186 (11%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128
           ++GP+G+GK+ + +I + K+     S    S  ++L      +    I    F    +F 
Sbjct: 62  IIGPNGAGKTTMMDIITGKTAPDTGSVWFGSRHNLLTMNEPEIATLGIGR-KFQKPTVFE 120

Query: 129 IINSIHQYDSSLLMTARTFP----------------VSWGVCLPDLCSRLKAATVVKISL 172
            +      + ++    R  P                V   + L DL ++L       +S 
Sbjct: 121 ALTVFENLELAMATDKRVIPTLRAAMKAEFRERIGEVLETIGLQDLRNQLAGI----LSH 176

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
               +LE  ++ M   R + +D+ +A    Q MER+      L  K   + +   MG  R
Sbjct: 177 GQKQWLEIGMLLMQKPRLLLVDEPVAGMTEQEMERTAELLTSLAGKQSVVVVEHDMGFVR 236

Query: 233 SLAAEV 238
           S+A +V
Sbjct: 237 SIARKV 242


>gi|315292418|gb|EFU51770.1| DnaA regulatory inactivator Hda [Escherichia coli MS 153-1]
          Length = 260

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 141 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 200

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 201 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 259


>gi|145236695|ref|XP_001390995.1| AAA family ATPase [Aspergillus niger CBS 513.88]
 gi|134075456|emb|CAK48017.1| unnamed protein product [Aspergillus niger]
          Length = 783

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 529 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 568


>gi|78184461|ref|YP_376896.1| chromosomal replication initiation protein [Synechococcus sp.
           CC9902]
 gi|123729943|sp|Q3AYH5|DNAA_SYNS9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78168755|gb|ABB25852.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           CC9902]
          Length = 462

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 3/137 (2%)

Query: 111 VLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  ++   +   + FH  N++H+    +++ +   P         L SR +   +
Sbjct: 223 ILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLI 282

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    ++ K     ++ + + L  YI  R   ++   E  + +    A   G
Sbjct: 283 ADIQSPDLETRMAILQKKAEQERMALPRDLIQYIAGRFTSNIRELEGALTRAVAFASITG 342

Query: 228 MGITRSLAAEVLKETQQ 244
           + +T    A +L  T Q
Sbjct: 343 LPMTVESVAPMLDPTGQ 359


>gi|284008472|emb|CBA74956.1| DnaA-homolog protein [Arsenophonus nasoniae]
          Length = 236

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 108/235 (45%), Gaps = 35/235 (14%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           +++ F SF     I+ ++ ++ +AI+ A+    S     S +       GSGKS L +  
Sbjct: 17  DDETFASF-----ITGENGILLAAIKSAINQFHS-----SYIYFWSQQEGSGKSHLLH-- 64

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFN--------------DTQLF 127
              +  T  S   +++  + +D R    P +L+ ++ L                 +  LF
Sbjct: 65  ---AACTELSQKGEAVGYVPLDKRSYFVPDVLDGMEHLALVCIDNVHCIADDEEWEIALF 121

Query: 128 HIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKM 185
           ++ N I +   S LL+T    P    + LPDL SRL    + K+  L D+D ++ + ++ 
Sbjct: 122 NLYNRILENGKSCLLITGDKPPRLIDLTLPDLASRLDWGQIYKLHPLSDEDKIQALQLRA 181

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              R   + ++++ ++++R++R       ++D++D+ ++     +T     ++LK
Sbjct: 182 KL-RGFELSEEVSRFVLKRLDRKTRTLFTMLDELDHASIVAQRKLTIPFVKDILK 235


>gi|312379275|gb|EFR25600.1| hypothetical protein AND_08921 [Anopheles darlingi]
          Length = 615

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R ++L GP G+GK+ +    + +S+ST FS  A SL S
Sbjct: 373 PPRGILLFGPPGTGKTLIGKCIASQSKSTFFSISASSLTS 412


>gi|239917531|ref|YP_002957089.1| AAA+ family ATPase [Micrococcus luteus NCTC 2665]
 gi|239838738|gb|ACS30535.1| AAA+ family ATPase [Micrococcus luteus NCTC 2665]
          Length = 336

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 38/179 (21%)

Query: 44  LVHSAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           L H  +EQ  R  +      P+R ++L GP G+GK+  A + + +     FS     LD+
Sbjct: 101 LTHVLLEQRQRDALARHGLTPARRLLLTGPPGTGKTSTARVIAGELGLPLFS---IRLDT 157

Query: 103 ILI------------------DTRKPVLLEDIDLLDF-----NDT-QLFHIINSIHQY-- 136
           +L                   +TR   L +++D L       ND  ++  ++NS  Q+  
Sbjct: 158 VLTKFMGETAAKLRLVFDALAETRGVYLFDEVDALGGDRAAQNDVGEIRRVLNSFLQFLE 217

Query: 137 ---DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
                S+++ A   P      L D     +  TV+  +LPDD  +E VI    A   I+
Sbjct: 218 EDTSDSVIIAATNHP-----SLLDNALFRRFDTVMDFALPDDAAVESVIKNRLASFHIY 271


>gi|255011256|ref|ZP_05283382.1| chromosomal replication initiation protein [Bacteroides fragilis
           3_1_12]
 gi|313149067|ref|ZP_07811260.1| chromosomal replication initiator protein dnaA [Bacteroides
           fragilis 3_1_12]
 gi|313137834|gb|EFR55194.1| chromosomal replication initiator protein dnaA [Bacteroides
           fragilis 3_1_12]
          Length = 475

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 33/178 (18%)

Query: 67  VILVGPSGSGKSCLAN--------IWSDK--------------------SRSTRFSNIAK 98
           + L G SG GK+ LAN        ++ DK                    + +  F N  +
Sbjct: 169 LFLHGASGVGKTHLANAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           ++D ++ID      +++   +       FHI N +HQ    L++T+   PV        L
Sbjct: 229 TIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERL 283

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            +R K   V ++  P  +  + ++        +    ++  YI + +  S+   E +V
Sbjct: 284 LTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGIV 341


>gi|224283952|ref|ZP_03647274.1| ATPase for DNA replication initiation [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313141104|ref|ZP_07803297.1| chromosomal replication initiator protein dnaA [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313133614|gb|EFR51231.1| chromosomal replication initiator protein dnaA [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 529

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 11/158 (6%)

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMT 143
           ++R   F+   + +D +LID        DI  L   +    Q FH  N++HQ +  +++ 
Sbjct: 275 QNRIAEFNRRYREVDVLLID--------DIQFLGGKEATLEQFFHTFNALHQANKRIVIA 326

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +   P +       L SR  +   V +  PD +    ++  M +         +   I +
Sbjct: 327 SDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASMNGTSTPNDVLNLIAE 386

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 387 RFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424


>gi|260584257|ref|ZP_05852004.1| DNA replication initiator protein, ATPase [Granulicatella elegans
           ATCC 700633]
 gi|260157775|gb|EEW92844.1| DNA replication initiator protein, ATPase [Granulicatella elegans
           ATCC 700633]
          Length = 455

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 111 VLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI      +    + FH  N++      +++T+   P         L SR  +   
Sbjct: 220 LLVDDIQFFAEKEATQEEFFHTFNALFNNQKQIVLTSDRQPTEIKALQERLVSRFVSGLP 279

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I+ PD +    ++ K      I I     +YI  +++ ++   E  + ++   +++ G
Sbjct: 280 VDITPPDLETRIAILSKKAEAVGIDIPTDTLSYIAGQIQSNVRELEGALVRVQAYSVTHG 339

Query: 228 MGITRSLAAEVLK 240
             IT +LAAE L+
Sbjct: 340 EDITTNLAAEALQ 352


>gi|86154004|ref|ZP_01072206.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842542|gb|EAQ59755.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 440

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFIYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|259481767|tpe|CBF75598.1| TPA: AAA family ATPase, putative (AFU_orthologue; AFUA_6G12560)
           [Aspergillus nidulans FGSC A4]
          Length = 803

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 550 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 589


>gi|110639382|ref|YP_679591.1| chromosomal replication initiation protein [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110282063|gb|ABG60249.1| chromosomal replication initiator protein DnaA [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 471

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 11/160 (6%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND-TQ--LFHIINSIHQYDSSLLMTA 144
           ++S  F+N    LD +++D        D+  L   + TQ   FHI N +HQ    +++T+
Sbjct: 218 NQSQEFTNQFLGLDVLILD--------DVQFLSGKEKTQEIFFHIFNHLHQSGKQIIITS 269

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P         L SR K      + +PD +    +I K      I I   +  Y+   
Sbjct: 270 DCAPKDIKGLQERLLSRFKWGLSADLQVPDYETRNAIICKKMQFEGIEIAADVIDYLAYS 329

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++ ++   E +V+ +       G  I   LA ++++   Q
Sbjct: 330 VDTNMRDLEGVVNSLIAQHTLSGRQIDLELAKQIIQNIVQ 369


>gi|311063460|ref|YP_003970185.1| Chromosomal replication initiator protein DnaA [Bifidobacterium
           bifidum PRL2010]
 gi|310865779|gb|ADP35148.1| Chromosomal replication initiator protein DnaA [Bifidobacterium
           bifidum PRL2010]
          Length = 529

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 11/158 (6%)

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMT 143
           ++R   F+   + +D +LID        DI  L   +    Q FH  N++HQ +  +++ 
Sbjct: 275 QNRIAEFNRRYREVDVLLID--------DIQFLGGKEATLEQFFHTFNALHQANKRIVIA 326

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +   P +       L SR  +   V +  PD +    ++  M +         +   I +
Sbjct: 327 SDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASMNGTSTPNDVLNLIAE 386

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 387 RFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424


>gi|157414323|ref|YP_001481579.1| chromosomal replication initiation protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|172046981|sp|A8FJG5|DNAA_CAMJ8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157385287|gb|ABV51602.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 81116]
          Length = 440

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFIYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|270284630|ref|ZP_05966430.2| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum
           DSM 20093]
 gi|270276567|gb|EFA22421.1| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum
           DSM 20093]
          Length = 560

 Score = 35.4 bits (80), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLL 141
           SD    + F++  +S+D +LID        DI  L        Q FH  N++ Q +  ++
Sbjct: 305 SDAKPMSEFNHRYRSVDVLLID--------DIQFLSGKSQTMEQFFHTFNTLQQNNKRIV 356

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           + +   P         L SR ++  VV +  P+ +    ++  M    ++ + + +   I
Sbjct: 357 IASDVAPKKLRDFEDRLISRFESGLVVDVKPPELETRIAILRMMAETNKVDVPRDVMDLI 416

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +    ++   E  + ++   A      ITR LA +VLK+
Sbjct: 417 AEHCTENIRQLEGALTRVTAQATLNNQPITRILAEQVLKD 456


>gi|325568972|ref|ZP_08145265.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158010|gb|EGC70166.1| ABC superfamily ATP binding cassette transporter, binding protein
           [Enterococcus casseliflavus ATCC 12755]
          Length = 350

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 36/51 (70%)

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           D + AAY+++++++ + + E ++D  D+++++  +GI +    E+L++TQ+
Sbjct: 280 DAQAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIAQRQRGELLQQTQE 330


>gi|309784767|ref|ZP_07679400.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 1617]
 gi|308927137|gb|EFP72611.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 1617]
          Length = 197

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 78  EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 137

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 138 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 196


>gi|310286521|ref|YP_003937779.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           bifidum S17]
 gi|309250457|gb|ADO52205.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           bifidum S17]
          Length = 529

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 11/158 (6%)

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMT 143
           ++R   F+   + +D +LID        DI  L   +    Q FH  N++HQ +  +++ 
Sbjct: 275 QNRIAEFNRRYREVDVLLID--------DIQFLGGKEATLEQFFHTFNALHQANKRIVIA 326

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +   P +       L SR  +   V +  PD +    ++  M +         +   I +
Sbjct: 327 SDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASMNGTSTPNDVLNLIAE 386

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 387 RFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424


>gi|239996083|ref|ZP_04716607.1| Chromosomal replication initiator, DnaA like protein to DnaA
           protein Hda [Alteromonas macleodii ATCC 27126]
          Length = 245

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 22/103 (21%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 123 DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
           +  LF ++N + +   ++++ ++   P +    LPDL SRL    +  ++  DD+  E+ 
Sbjct: 125 EEALFDLLNRVIETKQTMVLCSSHLGPSNPAFVLPDLRSRLAWGVIYHVNQLDDNGREEA 184

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
           +    A+R + +  +   +++   ER L     L+ ++D  +L
Sbjct: 185 VRLRAAERGLKLSNQALQFLLHHSERDLKSLMSLLARLDTRSL 227


>gi|228967948|ref|ZP_04128958.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791729|gb|EEM39321.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 178

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N+ S    +T           ILID +  V + D  L  F    L
Sbjct: 37  VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
             I    +  D        T  V   + LP   S++KA+ +
Sbjct: 89  GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121


>gi|189233764|ref|XP_001814283.1| PREDICTED: similar to aaa atpase [Tribolium castaneum]
          Length = 535

 Score = 35.4 bits (80), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 34/124 (27%)

Query: 5   KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRD--DLLVHSAIE------------ 50
           K D    V + +KND+ +++EE+ F     C G+ R+  D+L    ++            
Sbjct: 204 KPDKDKDVDNNEKNDKAESEEEKKF----ECHGMERELADVLERDIVQKNPNIRWDDIAD 259

Query: 51  --QAVRLIDS---WPSW----------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95
             +A RL++     P W          P + V++VGP G+GK+ LA   + +  ST F N
Sbjct: 260 LHEAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-STTFFN 318

Query: 96  IAKS 99
           ++ S
Sbjct: 319 VSSS 322


>gi|315057442|gb|ADT71771.1| Chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 440

 Score = 35.4 bits (80), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|57236915|ref|YP_178030.1| chromosomal replication initiation protein [Campylobacter jejuni
           RM1221]
 gi|71151795|sp|Q5HXF5|DNAA_CAMJR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|57165719|gb|AAW34498.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni RM1221]
          Length = 440

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|296104123|ref|YP_003614269.1| ATPase regulatory factor Hda [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058582|gb|ADF63320.1| ATPase regulatory factor Hda [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 197

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 126 LFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183
           +F++ N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ + +
Sbjct: 81  IFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 140

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +    R   + + +  ++++R++R +      +D++D  +++    +T     ++LK
Sbjct: 141 RARL-RGFELPEDVGRFLLKRLDREMRTLFDTLDQLDRASITAQRKLTIPFVKDILK 196


>gi|154491703|ref|ZP_02031329.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC
           43184]
 gi|218264325|ref|ZP_03478182.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii
           DSM 18315]
 gi|154087944|gb|EDN86989.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC
           43184]
 gi|218222093|gb|EEC94743.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii
           DSM 18315]
          Length = 462

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 11/139 (7%)

Query: 111 VLLEDI-DLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++L+DI +L+  + TQ   FHI N +H     L++T+   PV        L +RLK    
Sbjct: 227 LILDDIQELIGKDKTQNTFFHIFNHLHLLGKQLILTSDKAPVDLQGMEERLITRLKWGLT 286

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            ++  PD D  +K++    +   + I   +  +I   +  ++   E +V  +  LA S  
Sbjct: 287 AELDRPDLDLRKKILKNKISHDGVVIPDDVFNFIASNVTENVRDVEGIVASL--LAYSTA 344

Query: 228 MG------ITRSLAAEVLK 240
                   +T+ + + V+K
Sbjct: 345 FNRMIDLPLTKQVVSRVVK 363


>gi|229824635|ref|ZP_04450704.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271]
 gi|229786006|gb|EEP22120.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271]
          Length = 461

 Score = 35.4 bits (80), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDT--QLFHIINSIHQYDSSLLM 142
           +K+    F ++ + +D +LID        DI  L + N T  + FH  N ++ +   ++M
Sbjct: 209 EKNTIEEFRHMYRKIDVLLID--------DIQFLSNKNKTREEFFHTFNELYNHGKQIVM 260

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAAYI 201
           T    P S       L SR      + I+ P  DF  ++ I++  A  +   D     YI
Sbjct: 261 TCDRLPSSLSGLEDRLISRFAWGLQIDITPP--DFETRIAILRKKASNEFSADT--LQYI 316

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              +  ++   E  + ++   A      IT +LAAE L
Sbjct: 317 ASHVNTNIRELEGALTRVTAYATIHNREITTNLAAEAL 354


>gi|153951168|ref|YP_001397274.1| chromosomal replication initiation protein [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|166201873|sp|A7H194|DNAA_CAMJD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|152938614|gb|ABS43355.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 440

 Score = 35.4 bits (80), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|288916710|ref|ZP_06411085.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f]
 gi|288351965|gb|EFC86167.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f]
          Length = 515

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L+  +    + FH  N +H  +  +++++   P         L SR +   +
Sbjct: 274 LLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDRSPKQLAALEDRLRSRFEWGLI 333

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             ++ PD +    ++ K  A  ++ +   +  YI   +ER++   E  + ++   A    
Sbjct: 334 TDVTPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASLNK 393

Query: 228 MGITRSLAAEVLKE 241
             + R+LA  VL++
Sbjct: 394 SHVDRTLAEIVLRD 407


>gi|86152361|ref|ZP_01070571.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|315123617|ref|YP_004065621.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85840658|gb|EAQ57910.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|315017339|gb|ADT65432.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 440

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|293401231|ref|ZP_06645375.1| replicative DNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|317502255|ref|ZP_07960428.1| replicative DNA helicase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|291305357|gb|EFE46602.1| replicative DNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|316896370|gb|EFV18468.1| replicative DNA helicase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 276

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 22/122 (18%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKS----CLANIWSDKSRSTRFSNIAK 98
           ++  IE+A   +  W    S+   ++L G  G+GKS    C+AN   DK      +N AK
Sbjct: 102 INPEIEKAKNYVTHWEEIKSKAMGLLLWGDVGTGKSFFAGCVANALLDKGVPVLMTNFAK 161

Query: 99  SLDSI----------LIDTRKPVLLEDIDLL------DFNDTQLFHIINSIHQYDSSLLM 142
            L+S+           I++     L  ID L      +F   Q+FH+I+S ++    +++
Sbjct: 162 ILNSLTGIYPQDRNEFINSLNQYSLLIIDDLGVERNSEFALEQVFHVIDSRYRSMKPMII 221

Query: 143 TA 144
           T 
Sbjct: 222 TT 223


>gi|78212507|ref|YP_381286.1| chromosomal replication initiation protein [Synechococcus sp.
           CC9605]
 gi|78196966|gb|ABB34731.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           CC9605]
          Length = 450

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 5/152 (3%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           F +  ++ D IL+D      ++ I+  ++   + FH  N++H+    +++ +   P    
Sbjct: 201 FRDRYRAADLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIP 255

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR +   +  I  PD +    ++ K     ++ + + L  YI  R   ++   
Sbjct: 256 RLQQRLISRFQMGLIADIQSPDLETRMAILQKKAEQERMSLPRDLIQYIAGRFTSNIREL 315

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           E  + +    A   G+ +T    A +L  T Q
Sbjct: 316 EGALTRAVAFASITGLPMTVESVAPMLDPTGQ 347


>gi|297799416|ref|XP_002867592.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313428|gb|EFH43851.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 577

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 21/109 (19%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           S PS+++ +VGPSG+GKS L +I + ++  T  S     L+S+ I               
Sbjct: 38  SHPSQILAIVGPSGAGKSTLLDILAARTFPTSGS---MHLNSVPI--------------- 79

Query: 121 FNDTQLFHIINSIHQYDS--SLLMTARTFPVSWGVCLPDLCSRLKAATV 167
            N +    I + + Q+D+   LL  + TF  S  + LP + S++    V
Sbjct: 80  -NPSSYRKISSYVPQHDTFFPLLTVSETFTFSASLLLPKIPSKVSNVVV 127


>gi|113866929|ref|YP_725418.1| ABC transporter ATPase/permease [Ralstonia eutropha H16]
 gi|113525705|emb|CAJ92050.1| ABC-type transporter, ATPase and permease components: LipidE family
           [Ralstonia eutropha H16]
          Length = 580

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P  VV LVGPSGSGK+ L N+   + D +      +     +  L D R  +     D++
Sbjct: 361 PGEVVALVGPSGSGKTTLVNLVPRFFDPTGGRILLDGTPLTELSLKDLRNQIAFVSQDVV 420

Query: 120 DFNDT 124
            FNDT
Sbjct: 421 LFNDT 425


>gi|78221229|ref|YP_382976.1| chromosomal replication initiation protein [Geobacter
           metallireducens GS-15]
 gi|123742956|sp|Q39ZS3|DNAA_GEOMG RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78192484|gb|ABB30251.1| chromosomal replication initiator protein, DnaA [Geobacter
           metallireducens GS-15]
          Length = 450

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 11/153 (7%)

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +F N  + +D +LID        DI  +   +    + FH  N++++    +++T+  FP
Sbjct: 204 QFRNKFRKMDLLLID--------DIQFIAGKERTQEEFFHTFNALYESHKQIVVTSDKFP 255

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR +   +  I  PD +    ++ K      I +   +A ++      +
Sbjct: 256 KDIPGLEERLRSRFEWGLIADIQPPDTETKVAILSKKADSDGIRLPDDVALFLASSASTN 315

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +   E ++ ++  +A   G  IT  +A EVLK+
Sbjct: 316 VRELEGMLIRLGAVASLTGKNITLDMAREVLKD 348


>gi|121612751|ref|YP_999720.1| chromosomal replication initiation protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167004697|ref|ZP_02270455.1| chromosomal replication initiation protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|205355742|ref|ZP_03222512.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|166201874|sp|A1VX79|DNAA_CAMJJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|87248987|gb|EAQ71949.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|205346519|gb|EDZ33152.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 440

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|325068095|ref|ZP_08126768.1| ABC transporter related protein [Actinomyces oris K20]
          Length = 587

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 17/81 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P  V  L+GPSGSGKS LA + +      RF++               V +  +DL D +
Sbjct: 361 PGTVTALLGPSGSGKSTLATLIA------RFAD----------PDAGAVRIGGVDLRDMD 404

Query: 123 DTQLFHIINSIHQYDSSLLMT 143
           ++ L+  ++ + Q D+ LL T
Sbjct: 405 ESTLYSTVSFVLQ-DAQLLAT 424


>gi|308274785|emb|CBX31384.1| Uncharacterized ABC transporter ATP-binding protein yvrO
           [uncultured Desulfobacterium sp.]
          Length = 234

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD-SILIDTR 108
           L+GPSGSGKS L N+ +   ++   S IA+ +D S+LI+T 
Sbjct: 39  LMGPSGSGKSTLLNLIAGLDKADSGSIIAQGIDISLLIETE 79


>gi|121700090|ref|XP_001268310.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119396452|gb|EAW06884.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 805

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 550 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 589


>gi|270014962|gb|EFA11410.1| hypothetical protein TcasGA2_TC013585 [Tribolium castaneum]
          Length = 518

 Score = 35.4 bits (80), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 34/117 (29%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRD--DLLVHSAIE--------------QAVRL 55
           V + +KND+ +++EE+ F     C G+ R+  D+L    ++              +A RL
Sbjct: 194 VDNNEKNDKAESEEEKKF----ECHGMERELADVLERDIVQKNPNIRWDDIADLHEAKRL 249

Query: 56  IDS---WPSW----------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           ++     P W          P + V++VGP G+GK+ LA   + +  ST F N++ S
Sbjct: 250 LEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-STTFFNVSSS 305


>gi|315928462|gb|EFV07774.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni DFVF1099]
          Length = 440

 Score = 35.4 bits (80), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|302035395|ref|YP_003795717.1| chromosomal replication initiator protein DnaA [Candidatus
           Nitrospira defluvii]
 gi|300603459|emb|CBK39789.1| Chromosomal replication initiator protein DnaA [Candidatus
           Nitrospira defluvii]
          Length = 446

 Score = 35.4 bits (80), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 95/210 (45%), Gaps = 34/210 (16%)

Query: 60  PSWPSRVVILVGPSGSGKSCL----ANIWSDKS-------RSTRFSNIAKSLDSI----L 104
           P+     + L G  G GK+ L     N  +++S        + +F+N  + ++SI    +
Sbjct: 140 PAKAYNPLFLYGGVGLGKTHLLNAIGNYLAERSDLRIAYLTTEQFTN--EVINSIRYDKM 197

Query: 105 IDTRKP------VLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           ID RK       ++++DI  L   +    + FH  N++++    +++++  FP      +
Sbjct: 198 IDLRKRYRNVDMLMIDDIQFLAGKERTQEEFFHTFNTLYEAHKQIVLSSDRFPKD----M 253

Query: 156 PDLCSRLKA----ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
           PD+  RL++      +  +  PD +    ++ K   D +I + + +  ++   M+ ++  
Sbjct: 254 PDIEERLRSRFEWGLIADLQPPDVETRIAILRKKSEDERIALPEDVIHFLATTMKNNIRE 313

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            E  + ++   +   G  IT  +A  VL++
Sbjct: 314 LEGSLVRVGAYSSLTGQTITLDMAKNVLRD 343


>gi|254569128|ref|XP_002491674.1| Cytoplasmic heavy chain dynein, microtubule motor protein, required
            for anaphase spindle elongation [Pichia pastoris GS115]
 gi|238031471|emb|CAY69394.1| Cytoplasmic heavy chain dynein, microtubule motor protein, required
            for anaphase spindle elongation [Pichia pastoris GS115]
 gi|328351820|emb|CCA38219.1| Dynein heavy chain, cytoplasmic , cytosolic [Pichia pastoris CBS
            7435]
          Length = 4149

 Score = 35.4 bits (80), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 23/108 (21%)

Query: 40   RDDLLVHS-AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI--WSDKSRSTRFS-- 94
             DDLL H   IE+A+  +          +ILVGPS +GKS L     W ++ +  + S  
Sbjct: 2788 HDDLLDHILRIERALNQVQGH-------LILVGPSATGKSSLTKFVCWMNQYKFVQLSTW 2840

Query: 95   ------NIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQLFHIINSI 133
                  N  + L  IL+DT K    VLL  ID  D +DT     +N++
Sbjct: 2841 KGYTILNFEEQLRKILVDTIKENQIVLL--IDENDISDTSFIERMNNL 2886


>gi|86150555|ref|ZP_01068779.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85839007|gb|EAQ56272.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni CF93-6]
          Length = 440

 Score = 35.4 bits (80), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|326774026|ref|ZP_08233308.1| LOW QUALITY PROTEIN: ABC transporter, ATP-binding protein
           [Actinomyces viscosus C505]
 gi|326636165|gb|EGE37069.1| LOW QUALITY PROTEIN: ABC transporter, ATP-binding protein
           [Actinomyces viscosus C505]
          Length = 619

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 17/81 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P  V  L+GPSGSGKS LA + +      RF++               V +  +DL D +
Sbjct: 410 PGTVTALLGPSGSGKSTLATLIA------RFAD----------PDAGAVRIGGVDLRDMD 453

Query: 123 DTQLFHIINSIHQYDSSLLMT 143
           ++ L+  ++ + Q D+ LL T
Sbjct: 454 ESTLYSTVSFVLQ-DAQLLAT 473


>gi|284925304|gb|ADC27656.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni IA3902]
          Length = 440

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|158319060|ref|YP_001511567.1| chromosomal replication initiation protein [Alkaliphilus oremlandii
           OhILAs]
 gi|167016896|sp|A8MEA0|DNAA_ALKOO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|158139259|gb|ABW17571.1| chromosomal replication initiator protein DnaA [Alkaliphilus
           oremlandii OhILAs]
          Length = 451

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 78/182 (42%), Gaps = 13/182 (7%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+ V         + +I  D  R+  F N  +++D +L+D        DI  +   
Sbjct: 177 PKAKVVYVSSETFTNELINSIRHD--RNVEFRNRFRTIDVLLVD--------DIQFIAGK 226

Query: 123 DT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           ++   + FH  N++H+ +  +++++   P         L SR +   +  I  PD +   
Sbjct: 227 ESTQEEFFHTFNALHESNKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRI 286

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            ++ K      I +  ++  +I ++++ ++   E  + ++   +      IT  LA+E L
Sbjct: 287 AILYKKAQMENIDVPNEVLTHIAKKIQSNIRELEGALIRIVAYSSLTNSEITVELASEAL 346

Query: 240 KE 241
           KE
Sbjct: 347 KE 348


>gi|158311868|ref|YP_001504376.1| chromosomal replication initiator protein DnaA [Frankia sp.
           EAN1pec]
 gi|158107273|gb|ABW09470.1| chromosomal replication initiator protein DnaA [Frankia sp.
           EAN1pec]
          Length = 527

 Score = 35.0 bits (79), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L+  +    + FH  N +H  +  +++++   P         L SR +   +
Sbjct: 286 LLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDRSPKQLSALEDRLRSRFEWGLI 345

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             ++ PD +    ++ K  A  ++ +   +  YI   +ER++   E  + ++   A    
Sbjct: 346 TDVTPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASLNK 405

Query: 228 MGITRSLAAEVLKE 241
             + R+LA  VL++
Sbjct: 406 SHVDRTLAEIVLRD 419


>gi|315931305|gb|EFV10274.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 440

 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|305663892|ref|YP_003860180.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378461|gb|ADM28300.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
          Length = 480

 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 24/183 (13%)

Query: 48  AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----------------ANIWSDKSRST 91
           A  + +  +  WP+   + ++L GP G GK+ L                A+ +  +S   
Sbjct: 28  AKNKVLEWLKKWPNVQRKALLLYGPPGCGKTSLVEAIANEFKYELIEMNASDFRRRSDIE 87

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPV 149
           R +  A S+ SI   TRK +LL+++D +   + +  +  I   + +    ++MTA   P 
Sbjct: 88  RIAIRASSMQSIFGKTRKIILLDEVDGISAKEDEGGIEAIKQLVEKTSVPVIMTANN-PY 146

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                 P L    + A +V+        +  V+ K+     +  D++   YI++R E  L
Sbjct: 147 D-----PSLRVLREIAEMVQFKKLSKSDMRMVLNKICRAENLRCDEEAIDYIIERAEGDL 201

Query: 210 VFA 212
             A
Sbjct: 202 RAA 204


>gi|88597701|ref|ZP_01100934.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|218561694|ref|YP_002343473.1| chromosomal replication initiation protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|14194686|sp|Q9PJB0|DNAA_CAMJE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|88190005|gb|EAQ93981.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112359400|emb|CAL34182.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|315930328|gb|EFV09416.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 440

 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|254495524|ref|ZP_05108448.1| chromosomal replication initiator protein DnaA [Polaribacter sp.
           MED152]
 gi|85819880|gb|EAQ41037.1| chromosomal replication initiator protein DnaA [Polaribacter sp.
           MED152]
          Length = 475

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 27/133 (20%)

Query: 67  VILVGPSGSGKSCLANI--------WSDKS----RSTRFSNIAKSLDSILIDTRKPVL-- 112
           +++ G  G GK+ L++         + DK+     S +F+   + +DS+  +TR   +  
Sbjct: 176 LLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQ--QFIDSVKSNTRNDFIHF 233

Query: 113 LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            + ID+L  +D Q            FHI N +HQ    +++T+   PV        L SR
Sbjct: 234 YQMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSR 293

Query: 162 LKAATVVKISLPD 174
            K     ++  PD
Sbjct: 294 FKWGLSAELQAPD 306


>gi|283956179|ref|ZP_06373664.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792333|gb|EFC31117.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 440

 Score = 35.0 bits (79), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109
           + + GP+G GK+ L     + S           S  F     SN+   SLD      R  
Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198

Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+  L   D    + F I N I   D  ++MT+   P         L SR    
Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I+ P  D    +I K      I +   +  YI   +  ++   E ++  ++  A  
Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318

Query: 226 RGMGITRSLAAEVLKE 241
            G  IT  LA  V+K+
Sbjct: 319 LGQEITLELAKSVMKD 334


>gi|325102758|ref|YP_004272412.1| chromosomal replication initiator protein DnaA [Pedobacter saltans
           DSM 12145]
 gi|324971606|gb|ADY50590.1| chromosomal replication initiator protein DnaA [Pedobacter saltans
           DSM 12145]
          Length = 475

 Score = 35.0 bits (79), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 29/182 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR-FSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P ++VI V      K C   + S K+ +   F N  +++D I++D          D+ +F
Sbjct: 201 PDKLVICVSCE---KFCQQFVDSLKNNTINDFVNFYQAMDVIIMD----------DVHNF 247

Query: 122 ---NDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              + TQ   FHI N +HQ    L++T+   P         L SR K      +++PD +
Sbjct: 248 AGKDKTQDIFFHIFNHLHQSGKQLILTSDKAPKDLAGLEERLLSRFKWGLSADLTVPDIE 307

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYI-------VQRMERSLV--FAEKLVDKMD-NLALSR 226
               ++ K      I + + +  Y+       V+ +E ++V   A+  ++K + +LAL++
Sbjct: 308 TRMAILKKKMYQDGIELPEDVIEYVAHNIDNNVRELEGAMVSLLAQSTLNKKEVDLALAK 367

Query: 227 GM 228
            M
Sbjct: 368 QM 369


>gi|226309588|ref|YP_002769482.1| chromosomal replication initiation protein [Brevibacillus brevis
           NBRC 100599]
 gi|226092536|dbj|BAH40978.1| chromosomal replication initiator protein DnaA [Brevibacillus
           brevis NBRC 100599]
          Length = 453

 Score = 35.0 bits (79), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 11/157 (7%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTA 144
           +++  F N  +S+D +LID        DI  L   ++   + FH  N++H+    +++++
Sbjct: 200 NKAVEFRNKYRSVDVLLID--------DIQFLAGKESTQEEFFHTFNALHEESKQIIISS 251

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P         L SR +   +  I  PD +    ++ K      + I  ++ AYI  +
Sbjct: 252 DRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAKAENLDIPNEVMAYIANQ 311

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 312 IDSNIRELEGALIRVVAYSSLINRDIDTQLAAEALKD 348


>gi|119472663|ref|XP_001258398.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119406550|gb|EAW16501.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 805

 Score = 35.0 bits (79), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 550 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 589


>gi|148241930|ref|YP_001227087.1| chromosomal replication initiation protein [Synechococcus sp.
           RCC307]
 gi|147850240|emb|CAK27734.1| Chromosomal replication initiator protein dnaA [Synechococcus sp.
           RCC307]
          Length = 461

 Score = 35.0 bits (79), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 111 VLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  ++   +   + FH  N++H+    +++ +   P         L SR     +
Sbjct: 223 IMVDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIQRLQERLISRFSMGLI 282

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    ++ K     Q+ + + L  YI  R   ++   E  + +    A   G
Sbjct: 283 ADIQAPDLETRMAILHKKAEQEQMRLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITG 342

Query: 228 MGITRSLAAEVL 239
           + +T    A +L
Sbjct: 343 LPMTVDAVAPLL 354


>gi|33866070|ref|NP_897629.1| chromosomal replication initiation protein [Synechococcus sp. WH
           8102]
 gi|61212711|sp|Q7U605|DNAA_SYNPX RecName: Full=Chromosomal replication initiator protein DnaA
 gi|33639045|emb|CAE08051.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           WH 8102]
          Length = 465

 Score = 35.0 bits (79), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 3/137 (2%)

Query: 111 VLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  ++   +   + FH  N++H+    +++ +   P         L SR +   +
Sbjct: 226 LLVDDIQFIEGKEYTQEEFFHTFNALHEAGKQVVIASDRPPSQISRLQQRLISRFQMGLI 285

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    ++ K     ++ + + L  Y+  R   ++   E  + +    A   G
Sbjct: 286 ADIQAPDLETRMAILQKKAEQERMALPRDLIHYLAGRFTSNIRELEGALTRAVAFASITG 345

Query: 228 MGITRSLAAEVLKETQQ 244
           + +T    A +L  T Q
Sbjct: 346 LPMTVESVAPMLDPTGQ 362


>gi|124022539|ref|YP_001016846.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. MIT 9303]
 gi|166214690|sp|A2C7X1|DNAA_PROM3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123962825|gb|ABM77581.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. MIT 9303]
          Length = 463

 Score = 35.0 bits (79), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 29/152 (19%), Positives = 61/152 (40%), Gaps = 5/152 (3%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           F +  ++ D IL+D      ++ I+  ++   + FH  N++H+    +++ +   P    
Sbjct: 214 FRDRYRATDLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIP 268

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR     +  I  PD +    ++ K     ++ + + L  YI  R   ++   
Sbjct: 269 KLQERLISRFSMGLIADIQSPDLETRMAILQKKAEQERMMLPRDLIQYIAGRFTSNIREL 328

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           E  + +    A   G+ +T    A +L    Q
Sbjct: 329 EGALTRAVAFASITGLPMTVESVAPMLDPNGQ 360


>gi|261340795|ref|ZP_05968653.1| DnaA regulatory inactivator Hda [Enterobacter cancerogenus ATCC
           35316]
 gi|288317219|gb|EFC56157.1| DnaA regulatory inactivator Hda [Enterobacter cancerogenus ATCC
           35316]
          Length = 197

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F++ N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 78  EMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 137

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     ++LK
Sbjct: 138 LQLRSRL-RGFELPEDVGRFLLKRLDREMRTLFDTLDQLDRASITAQRKLTIPFVKDILK 196


>gi|260869185|ref|YP_003235587.1| ATPase regulatory factor Hda [Escherichia coli O111:H- str. 11128]
 gi|257765541|dbj|BAI37036.1| ATPase regulatory factor Hda [Escherichia coli O111:H- str. 11128]
          Length = 248

 Score = 35.0 bits (79), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F + N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ 
Sbjct: 129 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 188

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 189 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFITLDQLDRASITAQRKLTIPFVKEILK 247


>gi|269836397|ref|YP_003318625.1| phosphate ABC transporter, ATPase subunit [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785660|gb|ACZ37803.1| phosphate ABC transporter, ATPase subunit [Sphaerobacter
           thermophilus DSM 20745]
          Length = 272

 Score = 35.0 bits (79), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 27/183 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL--EDIDLLDFN 122
           RV  ++GPSG+GKS L             + + + +    +D R  VLL  EDI  L  +
Sbjct: 47  RVTAIIGPSGAGKSTLLRA---------LNRLHEKVPGAGVDGR--VLLDGEDIYGLGVD 95

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV----KISLPDD--D 176
              L   +  + Q  + LL  +    VS G+ L  +  R +AATV     +++L D+  D
Sbjct: 96  PILLRRRVGMVFQQPNPLLTRSIAENVSIGLELVGMPRRERAATVEWALRRVALWDEVRD 155

Query: 177 FLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            L+     +   +Q  + I + LA      +   ++  ++    +D +A SR   + R L
Sbjct: 156 RLDHPATSLSGGQQQRLCIARTLA------VRPEVILMDEPASALDPIATSRIEDLIREL 209

Query: 235 AAE 237
           A+E
Sbjct: 210 ASE 212


>gi|146312625|ref|YP_001177699.1| DNA replication initiation factor [Enterobacter sp. 638]
 gi|145319501|gb|ABP61648.1| regulatory inactivation of DnaA Hda protein [Enterobacter sp. 638]
          Length = 197

 Score = 35.0 bits (79), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 126 LFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183
           +F++ N I +   + LL+T    P    + LPDL SRL    + K+  L D+D L+ + +
Sbjct: 81  MFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 140

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +    R   + + +  ++++R++R +      +D++D+ +++    +T     + LK
Sbjct: 141 RSRL-RGFELPEDVGRFLLKRLDREMRTLFDTLDQLDHASITAQRKLTIPFVKDTLK 196


>gi|331007619|ref|ZP_08330761.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC1989]
 gi|330418559|gb|EGG93083.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC1989]
          Length = 584

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
           F    +S+D++LID        DI      D +  + FH  N++ + +  +++T   +P 
Sbjct: 339 FKRYYRSVDALLID--------DIQFFAGKDRSQEEFFHTFNALLEGNQQIILTCDRYPK 390

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L SR      +++  P+ +    +++K  A+ +I +    A +I QR+  ++
Sbjct: 391 VINNLEERLKSRFGWGLTIEVEPPELETRAAILLKRAAEIKIDLSYDAAFFIAQRVRSNV 450

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              E  + ++   A      IT  L  E LK+
Sbjct: 451 RELEGALKRVIANATFTQRPITVDLVKEALKD 482


>gi|330752007|emb|CBL80520.1| chromosomal replication initiation protein [uncultured Polaribacter
           sp.]
          Length = 475

 Score = 35.0 bits (79), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 27/133 (20%)

Query: 67  VILVGPSGSGKSCLANI--------WSDKS----RSTRFSNIAKSLDSILIDTRKPVL-- 112
           +++ G  G GK+ L++         + DK+     S +F+   + +DS+  +TR   +  
Sbjct: 176 LLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQ--QFIDSVKSNTRNDFIHF 233

Query: 113 LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            + ID+L  +D Q            FHI N +HQ    +++T+   PV        L SR
Sbjct: 234 YQMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSR 293

Query: 162 LKAATVVKISLPD 174
            K     ++  PD
Sbjct: 294 FKWGLSAELQAPD 306


>gi|322833964|ref|YP_004213991.1| DnaA regulatory inactivator Hda [Rahnella sp. Y9602]
 gi|321169165|gb|ADW74864.1| DnaA regulatory inactivator Hda [Rahnella sp. Y9602]
          Length = 235

 Score = 35.0 bits (79), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +FH+ N I +   + L +T    P    + LPDL SRL    + K+  L D++ L+ 
Sbjct: 116 EAAVFHLYNRILETGRTRLFITGDRPPRQLNLSLPDLASRLDWGQIYKLQPLSDEEKLQA 175

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + ++    R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 176 LQLRA-KLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233


>gi|225575691|ref|ZP_03784301.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037095|gb|EEG47341.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM
           10507]
          Length = 449

 Score = 35.0 bits (79), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 72/157 (45%), Gaps = 5/157 (3%)

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
            + +  T+F +  +++D +L+D  + ++ +D    +F     FH  NS+H     +++++
Sbjct: 193 GNNTAMTQFRDKYRNIDVLLVDDVQFIIGKDATQEEF-----FHTFNSLHSAKKQIIISS 247

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P    +    + SR +   +  IS PD +    ++ K        I++ +  YI   
Sbjct: 248 DKPPKDMEILEDRIRSRFEWGLIADISSPDYETRVAILKKKEEMDGYDINEDVIKYIATN 307

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  ++K+   A      +T  LA +VLK+
Sbjct: 308 IKSNIRELEGSLNKVMAFANLEKREVTVELAEQVLKD 344


>gi|149908827|ref|ZP_01897487.1| DNA replication initiation factor [Moritella sp. PE36]
 gi|149808101|gb|EDM68042.1| DNA replication initiation factor [Moritella sp. PE36]
          Length = 239

 Score = 35.0 bits (79), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 21/193 (10%)

Query: 67  VILVGPSGSGKSCLANIW----SDKSRSTRFSNIAKS---LDSIL--IDTRKPVLLEDID 117
           + L G   SG S L +      SD  RS  +  +  S   + S+L  ++    V +++I+
Sbjct: 48  IYLFGNRSSGTSHLLHATCTECSDADRSAAYLPMEMSSMMIPSVLDGMEHLDLVCIDNIE 107

Query: 118 LLDFN---DTQLFHIINS-IHQYD----SSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           L+  N   +  LF+  N  +  +D     SL++T  +     G+ LPDL SRL      +
Sbjct: 108 LIAGNREWEVALFNFYNRWLDSHDKNTPGSLIVTGNSAARHLGIQLPDLLSRLDWGVSYQ 167

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           + L DDD     +      R + +   +A +++ R  R +      +D++D  ++S    
Sbjct: 168 LQLLDDDGKLAALQLRAEFRGLKLPMDVARFLLNRSSRDMKTLIATLDRLDQASIS---- 223

Query: 230 ITRSLAAEVLKET 242
             R L    +KET
Sbjct: 224 AQRRLTIPFVKET 236


>gi|254519653|ref|ZP_05131709.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913402|gb|EEH98603.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 891

 Score = 35.0 bits (79), Expect = 9.8,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61
           N+ ++DY   + DK+  D     E++ FF     +G +     +   +EQA   + S+P 
Sbjct: 96  NMQEDDYINAIKDKKTEDIKDFHEQKDFFK--EVVGYNGS---LRVQVEQAKAAV-SYPP 149

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRST-RFSNIAK 98
               V+IL GPSG GKS LA+   + ++ST  FS  AK
Sbjct: 150 HGLHVLIL-GPSGVGKSYLADAMYEFAKSTSNFSEDAK 186


>gi|50120196|ref|YP_049363.1| DNA replication initiation factor [Pectobacterium atrosepticum
           SCRI1043]
 gi|57012731|sp|Q6D7R8|HDA_ERWCT RecName: Full=DnaA-homolog protein hda
 gi|49610722|emb|CAG74167.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 238

 Score = 35.0 bits (79), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 123 DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180
           +  +F++ N I +   +LL+ T    P    + LPDL SRL    + K+  L DD+  E 
Sbjct: 119 EMAVFNLYNRIQETGRALLLITGDRPPRQLNIRLPDLASRLDWGQIYKLQPLSDDEKGEA 178

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + ++    R   + + ++ ++++R++R +      +D++D+ +++    +T     E+L
Sbjct: 179 LQLRARL-RGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 236


>gi|28373154|ref|NP_783753.1| ABC transporter ATP-binding protein [Clostridium tetani E88]
 gi|28208738|gb|AAO37420.1|AF528097_24 ABC transporter ATP-binding protein [Clostridium tetani E88]
          Length = 252

 Score = 35.0 bits (79), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 14/73 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V ++GPSGSGK+ L N  S     TR          I+I+ ++P  L+D +L  F   +L
Sbjct: 35  VAIMGPSGSGKTTLLNCVSTIDSPTR--------GEIIINNKRPHELDDDNLAKFRRQEL 86

Query: 127 ------FHIINSI 133
                 F+++N++
Sbjct: 87  GFVFQDFNLVNTL 99


>gi|70992571|ref|XP_751134.1| AAA family ATPase [Aspergillus fumigatus Af293]
 gi|66848767|gb|EAL89096.1| AAA family ATPase, putative [Aspergillus fumigatus Af293]
          Length = 802

 Score = 35.0 bits (79), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 547 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 586


Searching..................................................done


Results from round 2




>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040244|gb|ACT57040.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 246

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60
           MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP
Sbjct: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD
Sbjct: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
           FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK
Sbjct: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK
Sbjct: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240

Query: 241 ETQQCD 246
           ETQQCD
Sbjct: 241 ETQQCD 246


>gi|315121761|ref|YP_004062250.1| hypothetical protein CKC_00055 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495163|gb|ADR51762.1| hypothetical protein CKC_00055 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 247

 Score =  305 bits (781), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 183/247 (74%), Positives = 210/247 (85%), Gaps = 2/247 (0%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRC-LGISRDDLLVHSAIEQAVRLIDSW 59
           MN + + Y+   P K++ D+ K K EQLF SFPRC   I+RDDLLVH +IEQAVR+IDSW
Sbjct: 1   MNFITKGYNLVFPAKERVDRGK-KGEQLFLSFPRCFTKINRDDLLVHDSIEQAVRIIDSW 59

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSW S  +I VGPSGSGKSCLANIWS KS++ R S +A+ LDS LIDTRKP+LLED D  
Sbjct: 60  PSWISPTMIFVGPSGSGKSCLANIWSQKSKAQRLSGLARGLDSSLIDTRKPILLEDADRF 119

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           D NDT+LFHIINSIHQ+DSSLLMTARTFPVSW V LPDL SRLKAAT+VK+SLPDDDFLE
Sbjct: 120 DLNDTELFHIINSIHQHDSSLLMTARTFPVSWSVRLPDLRSRLKAATIVKMSLPDDDFLE 179

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           K IVKMFADRQIFID++LA YIVQRMERSLVFAEKLV++MD+LALSRG GITRSLA+EVL
Sbjct: 180 KAIVKMFADRQIFIDERLAFYIVQRMERSLVFAEKLVNRMDDLALSRGTGITRSLASEVL 239

Query: 240 KETQQCD 246
           +E Q+CD
Sbjct: 240 EEIQKCD 246


>gi|325292517|ref|YP_004278381.1| DNA replication initiation ATPase protein [Agrobacterium sp. H13-3]
 gi|325060370|gb|ADY64061.1| DNA replication initiation ATPase protein [Agrobacterium sp. H13-3]
          Length = 242

 Score =  295 bits (757), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 157/231 (67%), Gaps = 1/231 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D+ KND  ++K EQL  +F       RDDLLV  +++ AV L+D WP+WPS VV+L GP 
Sbjct: 3   DQIKNDNARSKAEQLPLAFSHQSASGRDDLLVSDSLKAAVSLVDEWPNWPSPVVVLAGPP 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LANIW + S +      A  + +  +    PVL ED D   F+DT+LFH+INS+
Sbjct: 63  GSGKSHLANIWKNISSAQDIHPQA-GVGAARLAETGPVLFEDADRRGFDDTELFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            Q+ ++LLMT+R +P +W V LPDL SRLKA TVV+   PD+  L +V+VK+FADRQ+++
Sbjct: 122 RQHGTTLLMTSRQWPAAWPVTLPDLRSRLKAVTVVETGEPDEGLLAQVLVKLFADRQLYM 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           D KL  YIV RMERSL  A+ +VD++D LALSRG  ITR LAAEVL    +
Sbjct: 182 DDKLIGYIVNRMERSLDTAQTIVDRIDRLALSRGTRITRPLAAEVLNAMGE 232


>gi|222085485|ref|YP_002544015.1| DNA replication initiation ATPase protein [Agrobacterium
           radiobacter K84]
 gi|221722933|gb|ACM26089.1| DNA replication initiation ATPase protein [Agrobacterium
           radiobacter K84]
          Length = 237

 Score =  294 bits (754), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 124/232 (53%), Positives = 158/232 (68%), Gaps = 1/232 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D +  D  +   EQL  +F       RDDLLV   +  AVR++DSWP WPS VVIL GP 
Sbjct: 3   DVKNADLRRKPAEQLPLAFTHDAASGRDDLLVADPLSAAVRIVDSWPQWPSPVVILAGPV 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LA+IW ++S +      A S D+ +I    PV+ ED+D L F+DT+LFH+INS+
Sbjct: 63  GSGKSHLASIWCERSGAVPIHPKAGS-DAAVIAANGPVVFEDVDRLGFDDTELFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +  + LLMT+R +P+SW V LPDL SRLKAATVV+I  PD++ L +VIVK+FADRQ++I
Sbjct: 122 RENGTGLLMTSRLWPMSWPVTLPDLRSRLKAATVVEIGEPDEELLSQVIVKLFADRQLYI 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           D KL  YIV RMERSL  A+ +VD++D LAL RG  ITR LAAEVL E    
Sbjct: 182 DDKLVLYIVNRMERSLNAAQLIVDRLDRLALGRGTRITRILAAEVLNELGNS 233


>gi|15888480|ref|NP_354161.1| hypothetical protein Atu1143 [Agrobacterium tumefaciens str. C58]
 gi|15156178|gb|AAK86946.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 242

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 115/232 (49%), Positives = 156/232 (67%), Gaps = 1/232 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D+ K D  ++K EQL  +F       R+DLLV +++  AV L+D WP+WPS VV+L GP 
Sbjct: 3   DQIKTDNARSKAEQLPLAFSHQSASGREDLLVSASLAAAVSLVDEWPNWPSPVVVLAGPP 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LANIW + S +      A +  +   +T  PVL ED D   F+DT+LFH+INS+
Sbjct: 63  GSGKSHLANIWKNISDARDIHPEAGADAARAAET-GPVLFEDADRRGFDDTELFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            Q+ ++LLMT+R +P +W V LPDL SRLKA TVV+   PD+  L +V+VK+FADRQ+++
Sbjct: 122 RQHGTTLLMTSRQWPAAWPVTLPDLRSRLKAVTVVETGEPDEGLLAQVLVKLFADRQLYM 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           D KL  YIV RMERSL  A+ +V+++D+LALSR   ITR L AEVL    + 
Sbjct: 182 DDKLIGYIVNRMERSLDTAQTIVEQIDHLALSRATRITRPLVAEVLNAMDKA 233


>gi|327192210|gb|EGE59179.1| hypothetical protein RHECNPAF_237005 [Rhizobium etli CNPAF512]
          Length = 237

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 119/233 (51%), Positives = 153/233 (65%), Gaps = 1/233 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D +  D  +   EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP 
Sbjct: 3   DVKNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LA IW + S +          D+ +     PVL ED D L F+D  LFH+INS+
Sbjct: 63  GSGKSHLARIWRELSGAVSIHP-ELGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            ++ +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++I
Sbjct: 122 REHGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYI 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           D KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 182 DDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|218675452|ref|ZP_03525121.1| hypothetical protein RetlG_30801 [Rhizobium etli GR56]
          Length = 237

 Score =  288 bits (737), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 119/233 (51%), Positives = 153/233 (65%), Gaps = 1/233 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D +  D  +   EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP 
Sbjct: 3   DVKNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LA IW + S +          D+ +     PVL ED D L F+D  LFH+INS+
Sbjct: 63  GSGKSHLARIWRELSGAVSIHP-ELGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            ++ +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++I
Sbjct: 122 REHGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEGLLSQVIVKLFADRQLYI 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           D KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 182 DDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|237815164|ref|ZP_04594162.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A]
 gi|260883502|ref|ZP_05895116.1| permease [Brucella abortus bv. 9 str. C68]
 gi|297248081|ref|ZP_06931799.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196]
 gi|237790001|gb|EEP64211.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A]
 gi|260873030|gb|EEX80099.1| permease [Brucella abortus bv. 9 str. C68]
 gi|297175250|gb|EFH34597.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196]
          Length = 658

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 430 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 489

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 490 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 549

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 550 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 609

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 610 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 657


>gi|241203978|ref|YP_002975074.1| hypothetical protein Rleg_1243 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857868|gb|ACS55535.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 237

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 119/233 (51%), Positives = 152/233 (65%), Gaps = 1/233 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D +  D  +   EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP 
Sbjct: 3   DVKNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LA IW + S +          D+ +     PVL ED D L F+D  LFH+INS+
Sbjct: 63  GSGKSHLARIWRELSGAVDIHP-ELGSDAAIAAAAGPVLFEDADRLGFDDNALFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +  +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++I
Sbjct: 122 RENGTSLLMTSRLWPMSWPVLLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYI 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           D KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 182 DDKLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|116251364|ref|YP_767202.1| hypothetical protein RL1598 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256012|emb|CAK07093.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 237

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 120/233 (51%), Positives = 153/233 (65%), Gaps = 1/233 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D +  D  +N  EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP 
Sbjct: 3   DVKNADPKRNAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LA IW + S +          D+ +     PVL ED D L F+D  LFH+INS+
Sbjct: 63  GSGKSHLARIWRELSGAVDIHP-ELGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +  +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++I
Sbjct: 122 RENGTSLLMTSRLWPMSWPVLLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYI 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           D KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 182 DDKLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|190891172|ref|YP_001977714.1| hypothetical protein RHECIAT_CH0001558 [Rhizobium etli CIAT 652]
 gi|190696451|gb|ACE90536.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 237

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 119/233 (51%), Positives = 153/233 (65%), Gaps = 1/233 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D +  D  +   EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP 
Sbjct: 3   DVKNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LA IW + S +          D+ +     PVL ED D L F+D  LFH+INS+
Sbjct: 63  GSGKSHLARIWRELSGAVDIRP-DLGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            ++ +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++I
Sbjct: 122 REHGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYI 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           D KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 182 DDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|82699601|ref|YP_414175.1| ATP/GTP-binding protein [Brucella melitensis biovar Abortus 2308]
 gi|189023923|ref|YP_001934691.1| ATP/GTP-binding protein [Brucella abortus S19]
 gi|260545574|ref|ZP_05821315.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038]
 gi|260754474|ref|ZP_05866822.1| permease [Brucella abortus bv. 6 str. 870]
 gi|260761520|ref|ZP_05873863.1| permease [Brucella abortus bv. 2 str. 86/8/59]
 gi|82615702|emb|CAJ10689.1| ATP/GTP-binding site motif A (P-loop):Protein of unknown function
           UPF0118 [Brucella melitensis biovar Abortus 2308]
 gi|189019495|gb|ACD72217.1| ATP/GTP-binding protein [Brucella abortus S19]
 gi|260096981|gb|EEW80856.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038]
 gi|260671952|gb|EEX58773.1| permease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674582|gb|EEX61403.1| permease [Brucella abortus bv. 6 str. 870]
          Length = 627

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 399 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 458

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 459 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 518

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 519 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 578

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 579 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 626


>gi|209548700|ref|YP_002280617.1| hypothetical protein Rleg2_1097 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534456|gb|ACI54391.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 237

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 119/233 (51%), Positives = 153/233 (65%), Gaps = 1/233 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D +  D  +   EQL   F      SRDDLL+   +  AV ++D+WP+WPS VV+L GP 
Sbjct: 3   DVKNADPKRKAGEQLPLVFSHDAASSRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LA IW + S +          D+ +     PVL ED D L F+D  LFH+INS+
Sbjct: 63  GSGKSHLARIWRELSGAVDIHP-ELGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +  +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++I
Sbjct: 122 RENGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYI 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           D KL  YIV RMERSL  A+ +V+++D LALSRG  ITRS+AAEVL E    +
Sbjct: 182 DDKLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSMAAEVLNELGNSE 234


>gi|86357128|ref|YP_469020.1| hypothetical protein RHE_CH01490 [Rhizobium etli CFN 42]
 gi|86281230|gb|ABC90293.1| putative DNA replication initiation ATPase protein [Rhizobium etli
           CFN 42]
          Length = 237

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 117/233 (50%), Positives = 153/233 (65%), Gaps = 1/233 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D +  D  +   EQL  +F       RDDLL+   +  AV ++D+WP+WPS VV+L GP 
Sbjct: 3   DVKNADPKRKAGEQLPLAFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LA IW + S +          D+ +     PVL ED D L F+D  LFH+INS+
Sbjct: 63  GSGKSHLARIWQELSGAVSIHP-GLGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +  +SLL+T+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++I
Sbjct: 122 RENATSLLITSRLWPISWPVLLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYI 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           D KL  YIV RMERSL  A+ +V+++D LALSRG  ITR+LAAEVL E    +
Sbjct: 182 DDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRALAAEVLNELGNSE 234


>gi|218462578|ref|ZP_03502669.1| hypothetical protein RetlK5_25345 [Rhizobium etli Kim 5]
          Length = 237

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/233 (50%), Positives = 150/233 (64%), Gaps = 1/233 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D +     +   EQL   F       RDDLL+   +  AV ++D+WP WPS VV+L GP 
Sbjct: 3   DVKNVALKRKAAEQLSLLFSHDAASGRDDLLISERLAAAVSIVDAWPEWPSPVVVLAGPV 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LA IWS+ S +          D+ +     PVL ED D   F+D  LFH+INS+
Sbjct: 63  GSGKSHLARIWSELSGAVSIHP-ELGSDAAVAAAAGPVLFEDADRQGFDDNALFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +  +SLL+T+R +P+SW V LPDL SRLKAATVV+I  PD+  L +VIVK+FADRQ++I
Sbjct: 122 RENGTSLLITSRLWPMSWPVQLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYI 181

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           D KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL E    +
Sbjct: 182 DDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234


>gi|239831548|ref|ZP_04679877.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|239823815|gb|EEQ95383.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 246

 Score =  282 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 101/235 (42%), Positives = 147/235 (62%), Gaps = 5/235 (2%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG 76
           +    +    Q+  +     G  R+DL+V  +   AV LID WP+W S V IL GP+GSG
Sbjct: 11  QEAAMREAPRQIPLNLEHQPGYHREDLIVTGSNRAAVDLIDRWPNWLSPVTILAGPTGSG 70

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136
           K+ LA IW   + +      + + +++      PVL++DI    F++T LFH+INS+ Q 
Sbjct: 71  KTHLAEIWRAGTGALLVDPSSITEEAVNGAAEYPVLIDDIGATPFDETGLFHLINSVRQN 130

Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+
Sbjct: 131 AAQGIGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDLLLSGVIHKLFADRQV 190

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            ++  + AY+V R+ERSL+ A ++VDK+D  AL +   ITR+LAA+VL +++Q +
Sbjct: 191 SVEPHVVAYLVSRIERSLLSAIRIVDKLDRAALEQKSRITRTLAAQVLADSEQPE 245


>gi|153009901|ref|YP_001371116.1| hypothetical protein Oant_2574 [Ochrobactrum anthropi ATCC 49188]
 gi|151561789|gb|ABS15287.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
          Length = 232

 Score =  281 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 101/230 (43%), Positives = 144/230 (62%), Gaps = 5/230 (2%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +    Q+  +     G  R+D++V  +   AV LID WP+W S V IL GP+GSGK+ LA
Sbjct: 2   REAPRQIPLNLEHQPGYHREDMIVTGSNRAAVDLIDRWPNWLSPVTILAGPTGSGKTHLA 61

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY----- 136
            IW   + +        + +++      PVL++DI    F++T LFH+INS+ Q      
Sbjct: 62  EIWRAGTGALLVDPTNITEEAVNGAAEYPVLIDDIGAAPFDETGLFHLINSVRQNAAQGL 121

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
             SLLMT+R +P +W V LPDL SRLKAATVV+IS PDD  L  VI K+FADRQ+ ++  
Sbjct: 122 GPSLLMTSRLWPANWNVKLPDLASRLKAATVVEISEPDDLLLSGVIHKLFADRQVSVEPH 181

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + AY+V R+ERSL+ A ++VDK+D  AL +   ITR+LAA+VL  ++Q +
Sbjct: 182 VVAYLVSRIERSLLSAIQIVDKLDRAALEQKSRITRTLAAQVLAGSEQPE 231


>gi|227821508|ref|YP_002825478.1| hypothetical protein NGR_c09350 [Sinorhizobium fredii NGR234]
 gi|227340507|gb|ACP24725.1| chromosomal replication initiator, DnaA [Sinorhizobium fredii
           NGR234]
          Length = 229

 Score =  281 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 154/224 (68%), Gaps = 1/224 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +   EQL   F       R+DLLV   +  A+ ++D WP WPS VVI+ GP GSGKS LA
Sbjct: 3   RRPNEQLPLVFGHDPATGREDLLVSDRLSAAIAIVDHWPEWPSPVVIIAGPVGSGKSHLA 62

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
           +IW ++S +     +A S ++  I   KPVL ED+D   F+DT LFH+INS+ Q  ++LL
Sbjct: 63  SIWRERSDAVAIHPVAGS-NAADIAASKPVLFEDVDRQGFDDTALFHVINSVRQNGTALL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT+R +P+SW V LPDL SRLKAATVV+I  PDD+ L +V+ K+FADRQ+ +D++  AYI
Sbjct: 122 MTSRLWPMSWPVALPDLKSRLKAATVVEIGEPDDELLTQVLFKLFADRQLLVDERFVAYI 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           V RMERSL  A+ +V+++D+ AL+RG  +TR+LAAEVL+E    
Sbjct: 182 VNRMERSLEAAQTIVERLDHSALARGTRLTRALAAEVLEELANA 225


>gi|319784359|ref|YP_004143835.1| Chromosomal replication initiator DnaA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170247|gb|ADV13785.1| Chromosomal replication initiator DnaA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 234

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/227 (44%), Positives = 139/227 (61%), Gaps = 1/227 (0%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
             QP +   QL        G SRD+L+V     QAV L+D WP WPS VV+L GP+GSGK
Sbjct: 2   TAQPTDPPRQLPLDLGHGTGYSRDELVVSGTNNQAVALVDRWPDWPSPVVVLAGPAGSGK 61

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137
           + LA+IW  ++ +          DSI     +P L++D+D    ++  LFH+IN++    
Sbjct: 62  THLASIWRARANAAAVDARRIG-DSIANLGARPALIDDVDTGTVDEQGLFHLINAVRGAG 120

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           S LL+TAR FP +WGV LPDL SRLKAA  V+I  PDD  L  VI K+FADRQI ++  +
Sbjct: 121 SQLLLTARRFPSAWGVGLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQIEVEPHV 180

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             Y+V+R+ERSL  A ++V+++D  AL R   ITR+LAAE +    +
Sbjct: 181 VQYLVRRIERSLATAMRVVERLDRTALERKTPITRALAAETVSAMDE 227


>gi|15964939|ref|NP_385292.1| hypothetical protein SMc00617 [Sinorhizobium meliloti 1021]
 gi|307301009|ref|ZP_07580778.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|307317743|ref|ZP_07597181.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|15074118|emb|CAC45765.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306896505|gb|EFN27253.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306903964|gb|EFN34550.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 229

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 153/224 (68%), Gaps = 1/224 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           ++  EQL   F       RDDLLV   +  A+ ++D WP+WPS VVI+ GP GSGKS LA
Sbjct: 3   RHLSEQLPLVFGHAPATGRDDLLVSDRLSAAISIVDHWPAWPSPVVIICGPVGSGKSHLA 62

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
            IW +K+R+      A S ++  I   KPVL ED D   F+D  LFH+INS+ Q  ++LL
Sbjct: 63  GIWREKARAEPIHPFAGS-NAADIAAEKPVLFEDADRQGFDDAALFHVINSVRQNGTALL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT+R +P+SW V LPDL SRLKAATVV+I  PDD+ L +V+ K+FADRQ+ +D++L  Y+
Sbjct: 122 MTSRLWPMSWPVGLPDLKSRLKAATVVEIGEPDDELLVQVLTKLFADRQLLVDERLVGYV 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           V RMERSL  A+ +V+++D+LAL+RG   TR+LAAEVL+E    
Sbjct: 182 VARMERSLEAAQTIVERIDHLALARGTRPTRALAAEVLEELANT 225


>gi|150396018|ref|YP_001326485.1| hypothetical protein Smed_0794 [Sinorhizobium medicae WSM419]
 gi|150027533|gb|ABR59650.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 229

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/221 (50%), Positives = 152/221 (68%), Gaps = 1/221 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +   EQL  +F       RDDLLV   +  A+ ++D WP+WPS VVI+ GP GSGKS LA
Sbjct: 3   RPLSEQLPLAFGHAPATGRDDLLVSDRLSAAISIVDHWPAWPSPVVIICGPVGSGKSHLA 62

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
            IW +K+ +     +A S D+  I   KPVL ED D   F++  LFH+INS+ Q  ++LL
Sbjct: 63  GIWREKAGAEPIHPVAGS-DAADIAAEKPVLFEDADRQGFDEAALFHVINSVRQNGTALL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT+R +P+SW V LPDL SRLKAATVV+I  PDD+ L +V+ K+FADRQ+F+D++L  YI
Sbjct: 122 MTSRLWPMSWPVELPDLKSRLKAATVVEIGEPDDELLMQVLTKLFADRQLFVDERLIGYI 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           V RMERSL  A+ +V+++D+LAL+R    TR+LAAEVL+  
Sbjct: 182 VARMERSLEAAQTIVERIDHLALARATRPTRALAAEVLEAL 222


>gi|163759173|ref|ZP_02166259.1| hypothetical protein HPDFL43_05395 [Hoeflea phototrophica DFL-43]
 gi|162283577|gb|EDQ33862.1| hypothetical protein HPDFL43_05395 [Hoeflea phototrophica DFL-43]
          Length = 235

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/208 (48%), Positives = 143/208 (68%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
             +QL  +F       RDDL+V  ++  AV +ID WP WPS VVIL GP+GSGKS LA+I
Sbjct: 7   PAQQLPLAFEHDPASGRDDLIVSESVGGAVTMIDRWPEWPSPVVILAGPTGSGKSHLASI 66

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
           W+D++ + R +  A++ ++I      PVL+ED+D   +++T LFH+IN++  + ++ LMT
Sbjct: 67  WADRTGAHRVNLGARANEAIAAAASGPVLIEDVDRTAYDETALFHLINAVRSHGATALMT 126

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           AR FP  W V LPDL SRLKAATVV+I  PD++ L +V+VK+FADRQ+ +D ++  ++V 
Sbjct: 127 ARQFPAGWNVALPDLASRLKAATVVEIGEPDEELLAQVMVKLFADRQLNVDDRIVRWLVA 186

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGIT 231
           RMERSL     +VD +D LAL+RG  IT
Sbjct: 187 RMERSLAAVRHIVDGLDQLALARGSKIT 214


>gi|294852073|ref|ZP_06792746.1| hypothetical protein BAZG_00989 [Brucella sp. NVSL 07-0026]
 gi|294820662|gb|EFG37661.1| hypothetical protein BAZG_00989 [Brucella sp. NVSL 07-0026]
          Length = 236

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 8   DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 67

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 68  IWRSGTDALLVDPSNITEEAVNSAAGRPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 127

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 128 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 187

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 188 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 235


>gi|306842022|ref|ZP_07474695.1| ATP/GTP-binding protein [Brucella sp. BO2]
 gi|306287863|gb|EFM59283.1| ATP/GTP-binding protein [Brucella sp. BO2]
          Length = 235

 Score =  274 bits (702), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 7   DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 66

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 67  IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 126

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 127 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 186

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 187 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234


>gi|260463359|ref|ZP_05811560.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030949|gb|EEW32224.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 246

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 99/220 (45%), Positives = 137/220 (62%), Gaps = 1/220 (0%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
             Q  +   QL        G SRD+L+V     QA  L+D WP WPS VV+L GP+GSGK
Sbjct: 14  TAQRTDPPRQLPLDLGHGTGYSRDELVVSGTNSQAAALVDRWPDWPSPVVVLAGPAGSGK 73

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137
           + LA IW   + +       +  DSI     +P L++D+D    ++  LFH+IN++    
Sbjct: 74  THLAAIWRAHANAVAVDA-GRIGDSIANLGARPALIDDVDAGAVDEQGLFHLINAVRGAG 132

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           S+LL+TAR FP +WGV LPDL SRLKAA  V+I  PDD  L  VI K+FADRQ+ ++  +
Sbjct: 133 STLLLTARRFPAAWGVSLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQVEVEPHV 192

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             Y+V+R+ERSL  A ++V+++D +AL R M ITR+LAAE
Sbjct: 193 VQYLVRRIERSLATAMRVVERLDRIALERKMPITRALAAE 232


>gi|110634313|ref|YP_674521.1| hypothetical protein Meso_1963 [Mesorhizobium sp. BNC1]
 gi|110285297|gb|ABG63356.1| regulatory inactivation of DnaA Hda protein [Chelativorans sp.
           BNC1]
          Length = 233

 Score =  274 bits (701), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 95/220 (43%), Positives = 143/220 (65%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL        G SR+DL+V  A E AV L++SWP WP+ +V+L GP+GSGK+ LA+IW
Sbjct: 7   PRQLPLDLAHTEGRSREDLVVTPANELAVALVESWPDWPAPIVVLAGPAGSGKTHLADIW 66

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
            D+S +   S  A   +++      P+L++D D    ++T LFH+IN +    + LL+TA
Sbjct: 67  CDQSGAFPVSATAIETEAMAAAEHGPILIDDADSPLLDETGLFHLINMVRGSHTHLLLTA 126

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R  P +WGV LPDL SRLKAA  V+I  PDD  L  V +K+FADRQ+ ++  +  ++++R
Sbjct: 127 RHLPSAWGVKLPDLLSRLKAAAAVEIREPDDMLLTGVFIKLFADRQVAVEPHVVQFMLRR 186

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           MERSL  A ++V+++D +AL R + I+R+LAAE+L+   +
Sbjct: 187 MERSLSAARRIVERLDRVALERKIRISRTLAAEILEGMDE 226


>gi|13476596|ref|NP_108166.1| hypothetical protein mlr7968 [Mesorhizobium loti MAFF303099]
 gi|14027358|dbj|BAB53627.1| mlr7968 [Mesorhizobium loti MAFF303099]
          Length = 234

 Score =  274 bits (701), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 99/227 (43%), Positives = 138/227 (60%), Gaps = 1/227 (0%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
             Q  +   QL        G SRD+L+V     QA  L+D WP WPS VV+L GP+GSGK
Sbjct: 2   TAQRTDPPRQLPLDLGHGTGYSRDELVVSGTNNQAAALVDRWPDWPSPVVVLAGPAGSGK 61

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137
           + LA IW  ++ +          DSI     +P L++D+D    ++  LFH+IN++    
Sbjct: 62  THLAAIWRARANAVAVDARRIG-DSIAGLGARPALIDDVDAGAVDEQGLFHLINAVRGAG 120

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           S+LL+TAR FP +WGV LPDL SRLKAA  V+I  PDD  L  VI K+FADRQ+ ++  +
Sbjct: 121 STLLLTARRFPSAWGVSLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQVEVEPHV 180

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             Y+V+R+ERSL  A ++V+++D  AL R M ITR+LAAE +    +
Sbjct: 181 VQYLVRRIERSLATAMRVVERLDRTALERKMPITRALAAETVSAMDE 227


>gi|225627210|ref|ZP_03785248.1| ATP/GTP-binding protein [Brucella ceti str. Cudo]
 gi|261757927|ref|ZP_06001636.1| ATP/GTP-binding protein [Brucella sp. F5/99]
 gi|225618045|gb|EEH15089.1| ATP/GTP-binding protein [Brucella ceti str. Cudo]
 gi|261737911|gb|EEY25907.1| ATP/GTP-binding protein [Brucella sp. F5/99]
          Length = 236

 Score =  274 bits (701), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 8   DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 67

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 68  IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 127

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 128 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 187

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 188 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 235


>gi|23501601|ref|NP_697728.1| hypothetical protein BR0714 [Brucella suis 1330]
 gi|23347516|gb|AAN29643.1| conserved hypothetical protein [Brucella suis 1330]
          Length = 231

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 3   DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 63  IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAQAFDETGLFHLINSVRQHAAQGPG 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|260563758|ref|ZP_05834244.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M]
 gi|260566710|ref|ZP_05837180.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40]
 gi|261213721|ref|ZP_05928002.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|261218919|ref|ZP_05933200.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261221913|ref|ZP_05936194.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314524|ref|ZP_05953721.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317373|ref|ZP_05956570.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321582|ref|ZP_05960779.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261754699|ref|ZP_05998408.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|265983834|ref|ZP_06096569.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|265988410|ref|ZP_06100967.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265990825|ref|ZP_06103382.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265997876|ref|ZP_06110433.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|265999530|ref|ZP_05466791.2| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260153774|gb|EEW88866.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156228|gb|EEW91308.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40]
 gi|260915328|gb|EEX82189.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|260920497|gb|EEX87150.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260924008|gb|EEX90576.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294272|gb|EEX97768.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296596|gb|EEY00093.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261303550|gb|EEY07047.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261744452|gb|EEY32378.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262552344|gb|EEZ08334.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|263001609|gb|EEZ14184.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094519|gb|EEZ18328.1| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660607|gb|EEZ30868.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|264662426|gb|EEZ32687.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|326538455|gb|ADZ86670.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 235

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 7   DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 66

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 67  IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 126

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 127 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 186

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 187 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234


>gi|17987521|ref|NP_540155.1| hypothetical protein BMEI1238 [Brucella melitensis bv. 1 str. 16M]
 gi|148559701|ref|YP_001258694.1| hypothetical protein BOV_0704 [Brucella ovis ATCC 25840]
 gi|161618684|ref|YP_001592571.1| hypothetical protein BCAN_A0727 [Brucella canis ATCC 23365]
 gi|225852234|ref|YP_002732467.1| hypothetical protein BMEA_A0751 [Brucella melitensis ATCC 23457]
 gi|254688983|ref|ZP_05152237.1| ATP/GTP-binding protein [Brucella abortus bv. 6 str. 870]
 gi|254693465|ref|ZP_05155293.1| ATP/GTP-binding protein [Brucella abortus bv. 3 str. Tulya]
 gi|254697117|ref|ZP_05158945.1| ATP/GTP-binding protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704042|ref|ZP_05165870.1| ATP/GTP-binding protein [Brucella suis bv. 3 str. 686]
 gi|254707056|ref|ZP_05168884.1| ATP/GTP-binding protein [Brucella pinnipedialis M163/99/10]
 gi|254709834|ref|ZP_05171645.1| ATP/GTP-binding protein [Brucella pinnipedialis B2/94]
 gi|254713836|ref|ZP_05175647.1| ATP/GTP-binding protein [Brucella ceti M644/93/1]
 gi|254717106|ref|ZP_05178917.1| ATP/GTP-binding protein [Brucella ceti M13/05/1]
 gi|254718849|ref|ZP_05180660.1| ATP/GTP-binding protein [Brucella sp. 83/13]
 gi|254730013|ref|ZP_05188591.1| ATP/GTP-binding protein [Brucella abortus bv. 4 str. 292]
 gi|256031324|ref|ZP_05444938.1| ATP/GTP-binding protein [Brucella pinnipedialis M292/94/1]
 gi|256044405|ref|ZP_05447309.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256159444|ref|ZP_05457216.1| ATP/GTP-binding protein [Brucella ceti M490/95/1]
 gi|256254733|ref|ZP_05460269.1| ATP/GTP-binding protein [Brucella ceti B1/94]
 gi|256257231|ref|ZP_05462767.1| ATP/GTP-binding protein [Brucella abortus bv. 9 str. C68]
 gi|256369148|ref|YP_003106656.1| hypothetical protein BMI_I709 [Brucella microti CCM 4915]
 gi|260168462|ref|ZP_05755273.1| ATP/GTP-binding protein [Brucella sp. F5/99]
 gi|260757694|ref|ZP_05870042.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|306838771|ref|ZP_07471605.1| ATP/GTP-binding protein [Brucella sp. NF 2653]
 gi|306843674|ref|ZP_07476274.1| ATP/GTP-binding protein [Brucella sp. BO1]
 gi|17983222|gb|AAL52419.1| insertion sequence is21 putative ATP-binding protein [Brucella
           melitensis bv. 1 str. 16M]
 gi|148370958|gb|ABQ60937.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
 gi|161335495|gb|ABX61800.1| Hypothetical protein BCAN_A0727 [Brucella canis ATCC 23365]
 gi|225640599|gb|ACO00513.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|255999308|gb|ACU47707.1| hypothetical protein BMI_I709 [Brucella microti CCM 4915]
 gi|260668012|gb|EEX54952.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|306275984|gb|EFM57693.1| ATP/GTP-binding protein [Brucella sp. BO1]
 gi|306406173|gb|EFM62418.1| ATP/GTP-binding protein [Brucella sp. NF 2653]
 gi|326408735|gb|ADZ65800.1| ATP/GTP-binding protein [Brucella melitensis M28]
          Length = 231

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 3   DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 63  IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|163842986|ref|YP_001627390.1| hypothetical protein BSUIS_A0745 [Brucella suis ATCC 23445]
 gi|163673709|gb|ABY37820.1| Hypothetical protein BSUIS_A0745 [Brucella suis ATCC 23445]
          Length = 231

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 3   DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 63  IWRSGTDALLLDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|265994659|ref|ZP_06107216.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262765772|gb|EEZ11561.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 235

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 7   DAPRQIPLNLEYQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 66

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 67  IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 126

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 127 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 186

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 187 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234


>gi|256113248|ref|ZP_05454116.1| ATP/GTP-binding protein [Brucella melitensis bv. 3 str. Ether]
          Length = 231

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 3   DAPRQIPLNLEYQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 63  IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|92117644|ref|YP_577373.1| hypothetical protein Nham_2116 [Nitrobacter hamburgensis X14]
 gi|91800538|gb|ABE62913.1| regulatory inactivation of DnaA Hda protein [Nitrobacter
           hamburgensis X14]
          Length = 226

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 129/223 (57%), Gaps = 1/223 (0%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
             + +  QL F  P    +SRDD L   A   A+ LI+SWP WP+RV++L GP G GKS 
Sbjct: 2   AGRPRPRQLAFVLPHAESLSRDDFLEGPANAAALSLIESWPEWPNRVMLLAGPEGCGKSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138
           LA IW++++ +   S    +  ++        +++EDI+   F++  LFH++N   +  +
Sbjct: 62  LATIWAEQAGARSISAHGLTAAAVPGALATGALVVEDINPHAFDELALFHLMNLAREDGA 121

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            +LMTAR  P +  + L DL SRL+A  VV +  PDD  L  +I+K  ADRQ+ ID+ + 
Sbjct: 122 FVLMTARVPPAAIEIGLRDLQSRLRAVPVVTLMPPDDQLLRALIIKFCADRQMSIDETVV 181

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +I  R ERS   A   ++++D  +L  G  +TR+LAAE+L+ 
Sbjct: 182 HFIATRTERSFAAARHAIERLDAESLRLGRPVTRALAAELLRN 224


>gi|254464534|ref|ZP_05077945.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium
           Y4I]
 gi|206685442|gb|EDZ45924.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium
           Y4I]
          Length = 235

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL F  P    + R+D  V  +   AV L+D   +WPS  ++L GP G+GKS LA++W
Sbjct: 2   AQQLSFDLPAKPALGREDFFVAPSNAMAVALLDPQFAWPSGKLVLTGPKGAGKSHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           + ++ +        +  ++      P+ +ED+  +  +      LFH+ N +     +L+
Sbjct: 62  ASQTGARIVPAAKLTAGAVPELAHGPIAVEDVPQIAADPERQNALFHLHNLVLAQGHALV 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT +  P  WG+ LPDL SR++AAT  ++  PDD  L  V+ K+F DRQI     +  Y+
Sbjct: 122 MTGQPAPNLWGLSLPDLQSRVQAATHAELQPPDDQLLAVVLAKLFNDRQITPKPDVIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           V  M+RS   A ++V ++D+L+L+    +TR LA  VL E++
Sbjct: 182 VAHMDRSFAAAAQMVRRLDHLSLAEKRSLTRPLAVRVLSESR 223


>gi|261752040|ref|ZP_05995749.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261741793|gb|EEY29719.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
          Length = 235

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/228 (42%), Positives = 145/228 (63%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W   V IL GP+G+GK+ LA 
Sbjct: 7   DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLLPVTILAGPTGAGKTHLAE 66

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 67  IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 126

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 127 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 186

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 187 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234


>gi|254701495|ref|ZP_05163323.1| ATP/GTP-binding protein [Brucella suis bv. 5 str. 513]
          Length = 231

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/228 (42%), Positives = 145/228 (63%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W   V IL GP+G+GK+ LA 
Sbjct: 3   DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLLPVTILAGPTGAGKTHLAE 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        + +++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 63  IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|261324830|ref|ZP_05964027.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261300810|gb|EEY04307.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 235

 Score =  272 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 145/228 (63%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 7   DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 66

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        +  ++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 67  IWRSGTDALLVDPSNITEAAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 126

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 127 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDILLSGVIHKLFADRQVSVEPHV 186

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 187 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234


>gi|126728914|ref|ZP_01744729.1| hypothetical protein SSE37_08803 [Sagittula stellata E-37]
 gi|126710844|gb|EBA09895.1| hypothetical protein SSE37_08803 [Sagittula stellata E-37]
          Length = 233

 Score =  272 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
              +QL    P    + R+D  V  A   AV LID W  WP   +++ GP GSGK+ LA+
Sbjct: 2   KGPKQLPLPLPAREALGREDFFVSEANAMAVALIDRWSEWPGAKMVICGPRGSGKTHLAH 61

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSS 139
           +W+  S +   +    +   I      P+ +ED++ +  +   +  LFH+ N        
Sbjct: 62  VWAKLSGARILNADTLAGADIPDLAAAPLCVEDVERIAGDRPAEEALFHLHNLALAQGHQ 121

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LLMTA   P  W + LPDL SR+  A V ++  PDD  L  ++ K FADRQI    ++ +
Sbjct: 122 LLMTAEREPSLWPLVLPDLKSRIMGAQVARLGAPDDALLTALLAKQFADRQITPGPEVLS 181

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           Y+ + M RS   A  +V  +D  +L+    +TRS+AA VL      
Sbjct: 182 YLTRHMPRSHAAARDVVAALDESSLADKKRVTRSMAAAVLARMASA 227


>gi|256060837|ref|ZP_05450997.1| ATP/GTP-binding protein [Brucella neotomae 5K33]
          Length = 231

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 145/228 (63%), Gaps = 5/228 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   Q+  +     G +R+DL+V ++   AV LID WP+W S V IL GP+G+GK+ LA 
Sbjct: 3   DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW   + +        +  ++     +PVL+++I    F++T LFH+INS+ Q+      
Sbjct: 63  IWRSGTDALLVDPSNITEAAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD  L  VI K+FADRQ+ ++  +
Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDILLSGVIHKLFADRQVSVEPHV 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +Y+V RMERSL+ A ++VD++D  AL +   ITR+LAA++L +  Q 
Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230


>gi|126739191|ref|ZP_01754885.1| hypothetical protein RSK20926_22364 [Roseobacter sp. SK209-2-6]
 gi|126719808|gb|EBA16516.1| hypothetical protein RSK20926_22364 [Roseobacter sp. SK209-2-6]
          Length = 235

 Score =  270 bits (692), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 119/218 (54%), Gaps = 3/218 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL F  P    + RDD  V  +   AV L+D   +WPS  ++L GP+GSGKS LA++W
Sbjct: 2   AKQLSFDLPAKPALGRDDFFVAPSNAMAVALLDPSFAWPSGKLVLTGPAGSGKSHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLL 141
           + +S +          + +    +  V++ED+  +  +      LFH+ N +     +L+
Sbjct: 62  ASQSGANILQAADIHEELVPDFAQGSVVIEDVPRIAGDQVAQNALFHLHNLVLANGHALM 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T R  P  W + LPDL SR++AAT  ++  PDD  L  V+ K+F DRQ+     +  Y+
Sbjct: 122 LTGRAAPNLWQLTLPDLQSRVQAATHAELQPPDDALLSVVLAKLFNDRQVTPKPDVIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           V  M+RS   A  +VD++D LALS G  ++R LA  ++
Sbjct: 182 VAHMDRSFAAAADIVDQLDRLALSEGRTLSRPLAIRLM 219


>gi|222148179|ref|YP_002549136.1| hypothetical protein Avi_1578 [Agrobacterium vitis S4]
 gi|221735167|gb|ACM36130.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 240

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 111/221 (50%), Positives = 153/221 (69%), Gaps = 1/221 (0%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL  +        RDDLLV   +  AV ++D+WP+WPS VVIL GP GSGKS LA IW 
Sbjct: 20  EQLPLALGHRPASGRDDLLVSGRLAAAVSVVDAWPNWPSPVVILSGPQGSGKSHLAEIWR 79

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
            +S +     ++ + D+ +  +R  VL ED D  DF++ +LFH+INS+ Q+ +SLL+T+R
Sbjct: 80  TQSGAVDILPLSGA-DASMTASRGAVLFEDADRADFDEVELFHVINSVKQHGTSLLITSR 138

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
           T+P+SW V L DL SRLKAAT+V+I  PD+  L +VIVK+FADRQ+ ID+++  YIVQRM
Sbjct: 139 TWPLSWPVKLADLRSRLKAATLVEIGEPDEALLSQVIVKLFADRQLAIDERVVDYIVQRM 198

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           ERSL  A+ +V+++D LAL+R   I+R+LAAEVL      D
Sbjct: 199 ERSLAAAQAVVEQLDRLALARRAKISRALAAEVLDAVVAHD 239


>gi|49475708|ref|YP_033749.1| hypothetical protein BH09540 [Bartonella henselae str. Houston-1]
 gi|49238515|emb|CAF27747.1| hypothetical protein BH09540 [Bartonella henselae str. Houston-1]
          Length = 229

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/227 (38%), Positives = 131/227 (57%), Gaps = 5/227 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +E QL  +F        DDL+V  +   A +LID WP+W   + +LVG  GSGK+  ++
Sbjct: 3   KRETQLPLNFSYNPIFQFDDLVVTESNRMAFQLIDHWPNWILPIAVLVGKEGSGKTHFSS 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           +W++K+ + RF          +  + +  L+EDIDL + ++T LFH+INS+ Q       
Sbjct: 63  VWAEKADALRFHRNEIDQAIAVASSGRSFLIEDIDLGEISETGLFHLINSVKQANLDMCQ 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           ++LLMTART P +W + L DL SRL +  +V I+ PDD  L  V  K+F+DRQI +    
Sbjct: 123 ATLLMTARTVPSTWNLKLNDLKSRLNSIMLVAINQPDDALLTAVAFKLFSDRQITVHPDT 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             Y+V R ERSL   ++++D +D LAL R   ITR++  EVL    Q
Sbjct: 183 VYYLVNRCERSLFSLKRVIDSVDRLALQRKSKITRAVIGEVLNMQVQ 229


>gi|163868487|ref|YP_001609696.1| hypothetical protein Btr_1339 [Bartonella tribocorum CIP 105476]
 gi|161018143|emb|CAK01701.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 127/224 (56%), Gaps = 5/224 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +E QL  +FP       DDL+V  +   A +LID WP+W   + +LVG  GSGK+  ++
Sbjct: 3   GRETQLSLNFPYKPIFQFDDLVVTDSNRMAFQLIDHWPNWSLPIAVLVGKEGSGKTHFSS 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW  K+ + R           +     P L+EDID  + N+T+LFH+INS+ Q       
Sbjct: 63  IWLQKANAFRIQRNKIDQAVAMASLGSPFLIEDIDAGEINETELFHLINSVKQANIDARQ 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           ++LLMTA+T P +W + L DL SRL +   V+I+ PDD  L  V  K+F+DRQ+ +    
Sbjct: 123 ATLLMTAQTLPSAWNLKLNDLKSRLNSVMFVEINQPDDALLTAVAFKLFSDRQLIVHPDT 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             Y++ R ERSL   + ++D +D LAL R   ITR++ AEVL  
Sbjct: 183 VYYLISRCERSLFSLKHVIDSVDQLALQRKRKITRAVIAEVLNR 226


>gi|49474323|ref|YP_032365.1| hypothetical protein BQ07360 [Bartonella quintana str. Toulouse]
 gi|49239827|emb|CAF26220.1| hypothetical protein BQ07360 [Bartonella quintana str. Toulouse]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/227 (38%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +E QL   F        DDL+V  +   A +LID WP+W   + +LVG  GSGK+  ++
Sbjct: 3   ERETQLPLDFSYNPVFQFDDLVVTESNRMAFQLIDHWPNWILPIAVLVGKEGSGKTHFSS 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW+ K+ + R           +  + K  L+EDID  + ++T LFH+IN++ Q       
Sbjct: 63  IWAQKTDALRLHRNEIDQAIAIGSSGKSFLIEDIDAGEISETGLFHLINNVKQANLDTRQ 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           ++LL+TART P +W + L DL SRL +  +VKI+ PDD  L  V  K+F+DRQI +    
Sbjct: 123 ATLLITARTVPSAWNLKLNDLKSRLNSVMLVKINQPDDALLTAVAFKLFSDRQIIVHPDT 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             Y+V R ERSL   + ++D +D LAL R   ITR++  EVL    Q
Sbjct: 183 VYYLVSRCERSLFSLKHVIDSVDRLALQRKSKITRAVIGEVLNMQIQ 229


>gi|85703787|ref|ZP_01034891.1| hypothetical protein ROS217_23637 [Roseovarius sp. 217]
 gi|85672715|gb|EAQ27572.1| hypothetical protein ROS217_23637 [Roseovarius sp. 217]
          Length = 224

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL F  P    + R+D  V  A  +AV +IDSW +WPSR +IL GP+GSGK+ LA++W
Sbjct: 3   PHQLSFDLPVRPALGREDFFVSPANAEAVAMIDSWETWPSRKLILAGPTGSGKTHLAHVW 62

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           +  S +   +    +   I      P+ +ED +    N   +  LFH+ N       ++L
Sbjct: 63  AALSGARIIAAADLADADIPALALSPLAIEDAEQTAGNRAAEEALFHLHNLSLAEGHTIL 122

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +TA   P  W + LPDL SR++   V ++  PDD  L  V+ K+FADRQI        Y+
Sbjct: 123 LTAERPPHLWPLRLPDLMSRMQGTLVTQLRAPDDALLAAVLTKLFADRQIAPSPDTVPYL 182

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +R++RS     ++V+ +D  AL+    ITR+ AA+VL + 
Sbjct: 183 SRRIDRSFAAVREVVETLDAAALAERRAITRAFAAQVLDKM 223


>gi|328543999|ref|YP_004304108.1| ATP/GTP-binding protein [polymorphum gilvum SL003B-26A1]
 gi|326413743|gb|ADZ70806.1| ATP/GTP-binding protein [Polymorphum gilvum SL003B-26A1]
          Length = 227

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/225 (40%), Positives = 137/225 (60%), Gaps = 2/225 (0%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +  QL    P    + RDD LV ++   A  LIDSWP WPS VV+L GP GSGKS L  
Sbjct: 3   ERPRQLPLILPHEQALGRDDYLVGASNRAAFELIDSWPDWPSAVVVLAGPVGSGKSHLVQ 62

Query: 83  IWSDKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
           IW ++S +        +   +  + +   V +E+      ++  LFH++N+  Q  +S+L
Sbjct: 63  IWHERSGAAVIEAGDLTEGRVEELVSAGAVAVENAHR-GVDERALFHLLNAARQAGASML 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T+RT+P +W + L DL SRL+AAT V+I  PDDD L +V+VK+FADRQ+ ++  +  Y+
Sbjct: 122 ITSRTWPAAWPLALADLVSRLRAATPVEILEPDDDLLRRVLVKLFADRQLAVEPAVVDYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           V RMERSL  A ++V+ +D  AL+ G  ITR LA +VL++ Q  +
Sbjct: 182 VVRMERSLGVAGRVVEAIDREALANGSRITRPLAGKVLEQIQAGE 226


>gi|149914374|ref|ZP_01902905.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149811893|gb|EDM71726.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 222

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            EQL F  P    + RDD  V  A  +AV LI+ W  WPSR ++LVGP GSGK+ LA++W
Sbjct: 3   PEQLSFDLPVREALGRDDFFVSPANAEAVALIEGWRGWPSRKLLLVGPPGSGKTHLAHVW 62

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           +  + +   +  A +   I       + +ED D +  +   +  LFH+ N       ++L
Sbjct: 63  ATLADARIIAAHALTRADIPALATGHIAVEDCDDIARDAAAEEALFHLHNLALAEGHTVL 122

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
            TA   P  WG+ LPDL SR++      +  PDD  L  V++K+  DRQ+    +   Y+
Sbjct: 123 FTAARAPQHWGLSLPDLASRMQGTPATILHEPDDTLLAAVLMKLMTDRQLSPSPETIPYL 182

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +R++RS   A  +VD +D LAL+ G  I R+LAA+VL +
Sbjct: 183 TRRIDRSFEAARDVVDALDALALATGRPINRALAAKVLDK 222


>gi|114769541|ref|ZP_01447167.1| hypothetical protein OM2255_07405 [alpha proteobacterium HTCC2255]
 gi|114550458|gb|EAU53339.1| hypothetical protein OM2255_07405 [alpha proteobacterium HTCC2255]
          Length = 231

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/219 (35%), Positives = 123/219 (56%), Gaps = 3/219 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL F  P      R+D  V S+   AV+++++W +WP   +IL+GPSGSGKS LANIW
Sbjct: 2   PDQLTFDLPIKTAFGREDFFVTSSNSTAVKILENWKNWPLSKLILIGPSGSGKSHLANIW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           ++ +   R          + + ++  + LE  +++  N   +   FH+ N   +  + LL
Sbjct: 62  TEMTNGVRIEAKYLMDIDLQVASQSALCLEGFEVIAGNQELEAHAFHLHNLAQESGAPLL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T  + P +W + LPDL SR++  +V ++  PDD  L  V++K F DRQI ID K+  Y+
Sbjct: 122 ITGCSTPSTWNLLLPDLLSRIQGTSVAQLQSPDDVLLNAVLIKQFNDRQIAIDPKVVTYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++RMERS      LV+++D  AL  G  I+  LA  VL 
Sbjct: 182 LKRMERSFASISYLVNELDKGALKVGKPISIKLARNVLD 220


>gi|260426335|ref|ZP_05780314.1| chromosomal replication initiator, DnaA [Citreicella sp. SE45]
 gi|260420827|gb|EEX14078.1| chromosomal replication initiator, DnaA [Citreicella sp. SE45]
          Length = 233

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 3/222 (1%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
              +QL    P    + R+D  V  +   AV L+D W +WP+R ++LVGP G+GK+ LA+
Sbjct: 2   TGPDQLPLPLPVRPALGREDYFVSRSNGLAVALMDDWRNWPNRKLVLVGPHGAGKTHLAH 61

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSS 139
           +W+ ++ +            I      P+ +ED+  +  +   +  LFH+ N        
Sbjct: 62  VWAAETGAVIVPAKGLETADIPALANGPLCVEDVPAIAGDRPAEEALFHLHNLTLAQGQP 121

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           L++TA+T P  W + +PDL SR++      +  PDD  L  V+ K+ ADRQ      +  
Sbjct: 122 LMVTAQTPPALWPLVIPDLKSRMEGTQTATLPNPDDTLLSAVLAKLLADRQCVPAPDVIP 181

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           Y+V+ M RS   A +LV  +D  A++R  GITR+LA EVL  
Sbjct: 182 YLVRHMPRSFAMARELVSALDAHAMTRPKGITRALAREVLSR 223


>gi|40063570|gb|AAR38359.1| conserved hypothetical protein [uncultured marine bacterium 582]
          Length = 227

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 129/221 (58%), Gaps = 3/221 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    + RDD  +  +   AV +ID+W  W S+ ++L GP G+GK+ L+++W+ 
Sbjct: 4   QLSFDLPARAALGRDDFFISPSNRIAVSMIDNWTDWSSQKLLLTGPEGAGKTHLSHVWAR 63

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMT 143
           +S +T         D++   +  PV +E++  +       T LF++ N   +   S+L T
Sbjct: 64  QSGATIIDATELQDDAVPKLSSGPVAVENVHTIAGLDAQQTALFYLHNLCLETGQSILFT 123

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
            R  P  W + LPDL SRL+ A +V+++ PDD  L+ V++K+F DRQ+    +L  Y+V+
Sbjct: 124 GRGEPQHWLLTLPDLESRLRGAPLVQLNPPDDALLKAVLIKLFGDRQLSPSPELITYVVR 183

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           R++RS   A+KLV  +D L+L+    ++R LAA +L+ +Q+
Sbjct: 184 RIDRSFDAAQKLVVALDTLSLAEKRPLSRRLAARLLEPSQE 224


>gi|118590150|ref|ZP_01547553.1| hypothetical protein SIAM614_11568 [Stappia aggregata IAM 12614]
 gi|118437122|gb|EAV43760.1| hypothetical protein SIAM614_11568 [Stappia aggregata IAM 12614]
          Length = 226

 Score =  267 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/222 (39%), Positives = 130/222 (58%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
               QL    P    +SRDD LV  +   A  L++ WP WPS VV+L GP G+GK+ L  
Sbjct: 3   ETPRQLPLELPHEAALSRDDYLVGGSNRAAFELLERWPDWPSPVVVLAGPVGAGKTHLVR 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            + D++ +        +  S+      P  + +   L  ++T LFH++N+  Q   ++L+
Sbjct: 63  AFQDETGAVVLPAAELTPHSVQTLVAAPACVIEDAHLGIDNTALFHLLNAARQAGKTVLI 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T+RT+P SW + L DL SRL+AAT V+I  PDDD L +V+VK+FADRQI +D+ +  Y+V
Sbjct: 123 TSRTWPASWKISLADLQSRLRAATPVEILEPDDDLLRRVLVKLFADRQIAVDQGVVDYLV 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            RMERSL  A + V+ +D  AL+  + IT+ LA  VL+   +
Sbjct: 183 VRMERSLEVAMRAVEAIDQEALAGRVKITKPLAGRVLENVHK 224


>gi|319408623|emb|CBI82278.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 231

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL   F       RDDL+V  +   A +L+D WP+W   + +LVG  GSGK+  +++W
Sbjct: 5   ETQLPLDFSYESVFRRDDLVVTDSNRMAFQLVDHWPNWVLPIAVLVGKEGSGKTHFSSVW 64

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-------D 137
             K+ +                + + +L+EDID    N+T LFH+INSI Q         
Sbjct: 65  VQKANALIVHRDEIDQVITAASSGRSLLIEDIDTGKINETGLFHLINSIKQANLNVRQGQ 124

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           ++LLMTART P +W + L DL SRL +  +V+I  PDD  L  +  K+F+DRQI +   +
Sbjct: 125 ATLLMTARTLPSTWDLKLNDLKSRLNSVMLVEIDQPDDALLTAIAFKLFSDRQITVHSDI 184

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             Y+V R ERSL     ++D +D LAL R   ITR++  EV+    Q
Sbjct: 185 IHYLVSRCERSLFALRCVIDSVDKLALQRKRKITRAVICEVINTQMQ 231


>gi|319407203|emb|CBI80842.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 229

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL   F        DDL++  +   A +LI+ WP+W   V IL+G  GSGK+  +++W
Sbjct: 5   ETQLPLDFSHKSVFQFDDLVMTDSNRMAFQLINHWPNWVPPVAILIGDKGSGKTHFSSVW 64

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-----YDSS 139
           + K+ +    +        +  + K  L+ED+D  + ++T LFH+INS+ Q       ++
Sbjct: 65  AQKANALNVCHDEIDQVISMASSGKSFLIEDVDSGEISETGLFHLINSVKQANLGINQAT 124

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LLMTART P +W + L DL SRL +  +V I  PDD  L  +  K+F+DRQI +   +  
Sbjct: 125 LLMTARTLPSTWNLQLNDLKSRLNSVMLVVIKQPDDALLTAIAFKLFSDRQITVHPSVIH 184

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           Y++   ERSL   + ++D +D LAL R   +TRS+ +EV+    Q
Sbjct: 185 YLINHCERSLFSLKCVIDSVDRLALQRKSKVTRSIISEVINMQIQ 229


>gi|254459628|ref|ZP_05073044.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium
           HTCC2083]
 gi|206676217|gb|EDZ40704.1| chromosomal replication initiator, DnaA [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 234

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 126/220 (57%), Gaps = 3/220 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL F  P    + RDD  +  +   AV LID+  SW +  ++L+GP G+GK+ LA++W
Sbjct: 2   STQLSFDLPSRAALGRDDFFISPSNALAVVLIDTPESWNNGKLLLIGPKGAGKTHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           + +S +   +    + + +    + P+++ED+D +  +   +T LFH+ N       +LL
Sbjct: 62  AAQSGARIIAANTLTEEDVPNLVQTPLVIEDVDHIAGDRTFETALFHLHNLAQAEGRALL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +TA++ P  WG+CLPDL SRL+A     +  PDD  L  +++K+FADRQ+     +  ++
Sbjct: 122 LTAKSQPHLWGLCLPDLASRLQAVQSATLEAPDDTLLTALLMKLFADRQLNPAPDVIPFL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             R++RS   A+++V+ +D  AL  G  ITR+ A+  L +
Sbjct: 182 ALRIDRSFAAAQQIVEALDKAALDAGRAITRAFASAALDK 221


>gi|240850719|ref|YP_002972119.1| hypothetical protein Bgr_11870 [Bartonella grahamii as4aup]
 gi|240267842|gb|ACS51430.1| hypothetical protein Bgr_11870 [Bartonella grahamii as4aup]
          Length = 229

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +E QL  +FP       +DL+V  +   A +LID WP+W   + +LVG  GSGK+  +N
Sbjct: 3   GRETQLSLNFPYDPIFQFEDLVVTESNRMAFQLIDHWPNWSLPIAVLVGKEGSGKTHFSN 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           IW  K+ + R  +        +    +  L+EDI   + N+T+LFH+INSI Q       
Sbjct: 63  IWLQKADAFRIQHNEIDQAVTMASLGRSFLIEDIGAGEINETELFHLINSIKQANLDARQ 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           ++LLMTART P +W + L DL SRL +   V+I+ PDD  L  V  K+F+DRQ+ +    
Sbjct: 123 ATLLMTARTLPSAWNLKLNDLKSRLNSVMFVEINQPDDALLTAVAFKLFSDRQLIVHPDT 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             Y+V R ERSL   ++++D +D LAL R   ITR++ AEVL  
Sbjct: 183 VYYLVSRCERSLFSLKRVIDSVDQLALQRKRKITRAIIAEVLNR 226


>gi|259416785|ref|ZP_05740705.1| chromosomal replication initiator, DnaA [Silicibacter sp.
           TrichCH4B]
 gi|259348224|gb|EEW60001.1| chromosomal replication initiator, DnaA [Silicibacter sp.
           TrichCH4B]
          Length = 225

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            EQL F  P    + RDD  V  +   AV LID   +WPS  ++L GP GSGK+ LA++W
Sbjct: 2   SEQLSFDLPAKPALGRDDFFVAPSNAMAVALIDPAFAWPSGKLVLTGPKGSGKTHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           + +S +      A +   +      PV +ED+  +  +      LFH+ N +  +   L+
Sbjct: 62  AKESGARVVPARALTEADVPDLASGPVAIEDVPAIAEDARAQKALFHLHNMVLTHGHRLM 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T R  P  WG+ L DL SR++AAT   +  PDD  L  V+ K+F DRQI     +  Y+
Sbjct: 122 LTGRPAPNLWGLGLADLQSRVQAATHAALEAPDDALLAVVLAKLFNDRQITPKPDVIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           V RM+RS   A  +VD++D LAL+    ++R+LA  ++   Q+
Sbjct: 182 VGRMDRSFAAAAAVVDQLDRLALAEQRTLSRALAIRMMSSDQE 224


>gi|319404186|emb|CBI77779.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 229

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL   F        DDL++  +   A +LI+ WP+W   + +L+G  GSGK+  +++W
Sbjct: 5   ETQLPLDFSHKSVFQFDDLVMTDSNRMAFQLINHWPNWVPPIAVLIGDKGSGKTHFSSVW 64

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-----YDSS 139
           + K+ +    +        +  + K  L+ED+D  + ++T LFH+INSI Q       ++
Sbjct: 65  AQKANALNVCHDEIDQVIAMASSGKSFLIEDVDSGEISETGLFHLINSIKQANLGINQAT 124

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LLMTART P +W + L DL SRL +  +V +  PDD  L  +  K+F+DRQI +   +  
Sbjct: 125 LLMTARTLPSTWNLQLDDLKSRLNSVMLVVLKQPDDALLTAIAFKLFSDRQITVHPSVIH 184

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           Y++   ERSL   ++++D +D LAL R   +TRS+ +EV+    Q
Sbjct: 185 YLINHCERSLFSLKRVIDSVDRLALQRKSKVTRSIISEVINMQIQ 229


>gi|99081697|ref|YP_613851.1| chromosomal replication initiator, DnaA [Ruegeria sp. TM1040]
 gi|99037977|gb|ABF64589.1| Chromosomal replication initiator DnaA [Ruegeria sp. TM1040]
          Length = 225

 Score =  264 bits (676), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            EQL F  P    + RDD  V  +   AV LID   +WPS  ++L GP GSGK+ LA++W
Sbjct: 2   SEQLSFDLPAKPALGRDDFFVAPSNAMAVALIDPAFAWPSGKLVLTGPKGSGKTHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           + +S +      A +   +      PV +ED+  +  +      LFH+ N +  +   L+
Sbjct: 62  AKESGARVVPAHALTEADVPELASGPVAIEDVPDIAEDALAQKALFHLHNMVLTHGHRLM 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T R  P  WG+ L DL SR++AAT   +  PDD  L  V+ K+F DRQI     +  Y+
Sbjct: 122 LTGRPAPNLWGLGLADLQSRVQAATHAALEAPDDALLAVVLAKLFNDRQITPKPDVIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           V RM+RS   A  +V+++D LAL+    ++R+LA  ++   Q+
Sbjct: 182 VGRMDRSFAAAAAVVEQLDRLALAEQRTLSRALAIRLMSSDQK 224


>gi|115525284|ref|YP_782195.1| hypothetical protein RPE_3282 [Rhodopseudomonas palustris BisA53]
 gi|115519231|gb|ABJ07215.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas
           palustris BisA53]
          Length = 224

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 135/222 (60%), Gaps = 1/222 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           + +  QL  + P    +SRDD L   A   A+ L+D WP WP+RV++L GP GSGKS LA
Sbjct: 3   QGQPRQLALALPHAESLSRDDFLEGPANRVALSLVDHWPDWPNRVMLLSGPEGSGKSHLA 62

Query: 82  NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
            IW++++ +   S  A +  ++    T   +++ED+    F++  LFH++N   +  + +
Sbjct: 63  AIWAEQAGARSISAQALTSAAVPAALTTGALVVEDLTPGGFDERALFHLMNLAREDQAYV 122

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TAR  PV++ + L DL SRL+A  V+++  PDD     +IVK  ADRQ+ +D+ L ++
Sbjct: 123 LITARIPPVAFEIDLRDLRSRLRAVPVLELLPPDDQLFRALIVKFCADRQMSVDEALVSF 182

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  R++RS   A + V+K+D  AL  G  +TR+LAAE+ ++ 
Sbjct: 183 LANRIDRSFAAARRAVEKLDTEALRLGRPVTRALAAELFRDA 224


>gi|254505101|ref|ZP_05117252.1| hypothetical protein SADFL11_5141 [Labrenzia alexandrii DFL-11]
 gi|222441172|gb|EEE47851.1| hypothetical protein SADFL11_5141 [Labrenzia alexandrii DFL-11]
          Length = 226

 Score =  264 bits (675), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 128/224 (57%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
               QL    P    + R+D LV  + + A  L++ WP WPS V+IL GP GSGK+ L  
Sbjct: 3   ETPRQLPLDLPHDAALGREDYLVGKSNQAAFELLERWPDWPSPVIILAGPVGSGKTHLVE 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            + D++ +        +   +      P  + +      N+T LFH++N+  Q   ++L+
Sbjct: 63  AFRDETGAEVIQARDLTEAGVSALVAAPACVVEDAHRGVNNTALFHLLNAARQAGKTVLI 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T+RT+P SW + LPDL SRL+AAT V++  PDDD L +V+VK+FADRQI +D  +  Y+V
Sbjct: 123 TSRTWPASWKISLPDLLSRLRAATPVEVLEPDDDLLRRVLVKLFADRQIGVDIGVVDYLV 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            RMERSL  A + VD +D  AL+  + I++ LA  VL+     D
Sbjct: 183 VRMERSLEVALRAVDAIDREALAGRVKISKPLAGRVLETVTGTD 226


>gi|316933720|ref|YP_004108702.1| hypothetical protein Rpdx1_2378 [Rhodopseudomonas palustris DX-1]
 gi|315601434|gb|ADU43969.1| hypothetical protein Rpdx1_2378 [Rhodopseudomonas palustris DX-1]
          Length = 225

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 134/221 (60%), Gaps = 1/221 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           + +  QL    P    +SR+D L  SA   A+ LI+SWP WP+R+++LVGP GSGKS LA
Sbjct: 4   RVEPRQLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGSGKSHLA 63

Query: 82  NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
            IW++ + +   +  A +  ++        V++ED+    F++  LFH+IN   + ++ +
Sbjct: 64  AIWAELAGARSTAAQALNAAAVPGALATGAVVVEDLAPGSFDERALFHLINMAREDEAYV 123

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L T R  P ++ V L DL SRL+A  VV +  PDD     +IVK  ADRQ+ ID  L  Y
Sbjct: 124 LFTGRLAPSAFPVELRDLKSRLRAVPVVSLLPPDDALFRALIVKFCADRQMCIDAGLVGY 183

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  R++RS V A ++V+K+D +AL  G  +TR+LA+E+L++
Sbjct: 184 LANRIDRSFVAARRVVEKLDTMALRLGRPVTRALASEILRD 224


>gi|86749611|ref|YP_486107.1| hypothetical protein RPB_2491 [Rhodopseudomonas palustris HaA2]
 gi|86572639|gb|ABD07196.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas
           palustris HaA2]
          Length = 225

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 135/221 (61%), Gaps = 1/221 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           + +  QL    P    +SR+D L  +A   A+RLI+SWP WP+R+++LVGP GSGKS LA
Sbjct: 4   RVQPRQLALDLPHAESLSREDFLEGTANSSALRLIESWPDWPNRIMLLVGPEGSGKSHLA 63

Query: 82  NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           +IW++++ +   S  A +  ++  +     +++ED+    F++  LFH+IN   + ++ +
Sbjct: 64  SIWAEQAGARSTSAQALTAANVPGELATGALVVEDLTPGSFDERALFHLINLAREDEAYV 123

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TAR  P ++   L DL SRL+A  VV +  PDD     +IVK  ADRQ+ ID  L  Y
Sbjct: 124 LITARLAPAAFPADLRDLRSRLRAVPVVTLLPPDDALFRALIVKFCADRQMSIDANLVGY 183

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  R++RS   A + V+++D  AL  G  +TR+LAA+VL+ 
Sbjct: 184 LANRIDRSFAAARQTVERLDTEALRLGRPVTRALAADVLRN 224


>gi|319405633|emb|CBI79256.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL            DDL++  +   A +LI+ WP+W   + +L+G  GSGK+  +++W
Sbjct: 5   ETQLPLDLSHKSVFQFDDLIMTDSNRMAFQLINHWPNWIPPIAVLIGDKGSGKTHFSSVW 64

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-----YDSS 139
           + K+ +    +        +  + K  L+EDID  + ++  LFH+INS+ Q       ++
Sbjct: 65  AQKANALNICHEEIDQVIAIASSGKSFLIEDIDSAEISEIGLFHLINSVKQANLHMNQAT 124

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LLMTART P +W + L DL SRL +  +V +  PDD  L  +  K+F+DRQI +   +  
Sbjct: 125 LLMTARTLPSTWNLQLNDLKSRLNSVMLVVLKQPDDALLTAIAFKLFSDRQITVHPSVIH 184

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           Y++ R ERSL   + ++D +D LAL R   +TR++ +EV+    Q
Sbjct: 185 YLINRCERSLFSLKSIIDSVDQLALQRKSKVTRAIISEVINMQIQ 229


>gi|163737419|ref|ZP_02144836.1| Chromosomal replication initiator, DnaA [Phaeobacter gallaeciensis
           BS107]
 gi|161388945|gb|EDQ13297.1| Chromosomal replication initiator, DnaA [Phaeobacter gallaeciensis
           BS107]
          Length = 256

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 3/220 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL F  P    + RDD  V  +   AV ++D   +WP   ++L GP  SGK+ L ++W
Sbjct: 2   AQQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           +  S +        + + +      P+ +ED+  +  +      LFH+ N +     +L+
Sbjct: 62  ASNSGAQIIPAWQLTKEDVPHLADGPIAVEDVPDIADSAPAQDALFHLHNLVLANGHALM 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T R  P  WG+ LPDL SR++ A   ++  PDD  L  V+ K+F DRQI     +  Y+
Sbjct: 122 LTGRAAPHLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           V  M+RS   A ++V+++D L+L+ G  ++R LA E++ +
Sbjct: 182 VAHMDRSFAAASQIVEELDRLSLTEGRMVSRVLAVELMSD 221


>gi|86138527|ref|ZP_01057100.1| hypothetical protein MED193_21806 [Roseobacter sp. MED193]
 gi|85824587|gb|EAQ44789.1| hypothetical protein MED193_21806 [Roseobacter sp. MED193]
          Length = 225

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL F  P    + RDD  V  +   AV L+D    WPS  ++L GP+GSGK+ LA++W
Sbjct: 2   AQQLSFDLPAKTALGRDDFFVAPSNAMAVALLDPSFHWPSGKLVLTGPTGSGKTHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           + ++ +          D +    + PV++ED+  +  N      LFH+ N +     +L+
Sbjct: 62  ASQTGAKILQACDLKEDRVPELAQAPVVVEDVPAIAGNPEAQNALFHLHNLVLSNGHALM 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T R  P  W + L DL SR++AAT  ++  PDD  L  V+ K+F DRQ+     +  Y+
Sbjct: 122 LTGRAAPNLWQLSLADLQSRMQAATHAELQAPDDALLAVVLAKLFNDRQVTPKADVIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           V  M+RS   A  +V ++DNLALS G  ++R LA  ++ +
Sbjct: 182 VAHMDRSFAAAAVIVKQLDNLALSEGRTLSRPLAVRLMSQ 221


>gi|319898870|ref|YP_004158963.1| hypothetical protein BARCL_0704 [Bartonella clarridgeiae 73]
 gi|319402834|emb|CBI76385.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 229

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 5/223 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +E QL   F        DDL+V  +   A +LI+ WP+W   + IL+G  GSGK+  ++
Sbjct: 3   KREMQLPLDFSYKSIFQFDDLVVTDSNRMAFQLINHWPNWVPPIAILIGDKGSGKTHFSS 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD----- 137
           +W+ K+ +            +   + KP L+E+ID  + ++  LFH+IN I Q +     
Sbjct: 63  VWAQKANALNIFYDEIDQFIVEASSGKPFLIENIDSGEIDEIGLFHLINIIKQANLHVNH 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           ++LLMTART P +W + L DL SRL +  +V +  PDD+ L  +  K+F+DRQI +   +
Sbjct: 123 ATLLMTARTLPSAWNLKLNDLKSRLNSVMLVALEQPDDELLTAIAFKLFSDRQITVHSDI 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             Y++ R ERSL   + ++D +D LAL R   +TR++  EV+ 
Sbjct: 183 IYYLINRCERSLFSLKCIIDSVDRLALQRKSKVTRAIITEVIN 225


>gi|91977422|ref|YP_570081.1| hypothetical protein RPD_2953 [Rhodopseudomonas palustris BisB5]
 gi|91683878|gb|ABE40180.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas
           palustris BisB5]
          Length = 225

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 136/221 (61%), Gaps = 1/221 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           + +  QL    P    +SR+D L  +A   A++LI+SWP WP+R+++LVGP GSGKS LA
Sbjct: 4   RVQPRQLALDLPHAESLSREDFLEGTANTAALKLIESWPDWPNRIMLLVGPEGSGKSHLA 63

Query: 82  NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           +IW++++ +   S  A +  ++  +     +++ED+    F++  LFH++N   + ++ +
Sbjct: 64  SIWAEQAGARSTSAQALTPANVPGELATGALVVEDLTPGSFDERALFHLMNLAREDEAYV 123

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TAR  P ++   L DL SRL+A  VV +  PDD     +IVK  ADRQ+ ID  L  Y
Sbjct: 124 LITARLAPSAFPAELRDLRSRLRAVPVVSLLAPDDALFRALIVKFCADRQMSIDANLVGY 183

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  R++RS   A + V+++D  AL  G  +TR+LAAE+L+E
Sbjct: 184 LANRIDRSFAAARQAVERLDTEALRLGRPVTRALAAELLRE 224


>gi|149202229|ref|ZP_01879202.1| Chromosomal replication initiator, DnaA [Roseovarius sp. TM1035]
 gi|149144327|gb|EDM32358.1| Chromosomal replication initiator, DnaA [Roseovarius sp. TM1035]
          Length = 225

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL F  P    + R+   V  A  +AV +I+ W  WP R +IL GPSG+GK+ LA++W
Sbjct: 3   PRQLSFDLPVRAALGREVFFVSPANAEAVAMIEGWQGWPGRKLILAGPSGAGKTHLAHVW 62

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           +  S +   +    +   I     +P+++ED D +  +   +  LFH+ N +     SLL
Sbjct: 63  AALSGAQMIAAKHIAQADIPNFASRPIVVEDADQIARDRPSEEALFHLHNLVLAEGHSLL 122

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +TAR  P  W + LPDL SR++   + ++  PDD  L  V+ K+FADRQI        Y+
Sbjct: 123 LTARQPPNLWPLVLPDLQSRMQGTMLTQLRAPDDTLLAAVLTKLFADRQIAPSPDTIPYL 182

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            +RM+RS   A ++V  +D  AL+ G  ITR LA++VL +   
Sbjct: 183 ARRMDRSFDAAREVVAALDAAALAEGRAITRVLASQVLDKLAH 225


>gi|260430971|ref|ZP_05784942.1| chromosomal replication initiator, DnaA [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414799|gb|EEX08058.1| chromosomal replication initiator, DnaA [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 229

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL F  P    + R+D  V  +   AV +I +  SWP   ++L GP+GSGK+ LA++W
Sbjct: 2   ARQLSFDLPAKTALGREDFFVSPSNALAVAMISA-NSWPGNKLVLSGPAGSGKTHLAHVW 60

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLL 141
           + ++            D + +  R P+ +ED+ ++  +  Q   LFH+ N +     +LL
Sbjct: 61  AAETGGQIIQATNLRHDDVPLLARAPIAVEDVPMIAGDIEQQKVLFHLHNLVLAEGHALL 120

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T R  P  W + L DL SR++ A  V +  PDD  L  V+ K+F DRQ+     + AY+
Sbjct: 121 LTGRLAPKYWELPLADLQSRVEGAHHVALDPPDDALLCAVLAKLFVDRQLNPGPDVIAYL 180

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           V+ M+R    A  +V ++D++AL     ITR+LA  VL +
Sbjct: 181 VKHMDRRFETAADVVAQLDHVALMEKREITRTLAIRVLNK 220


>gi|254476295|ref|ZP_05089681.1| chromosomal replication initiator, DnaA [Ruegeria sp. R11]
 gi|214030538|gb|EEB71373.1| chromosomal replication initiator, DnaA [Ruegeria sp. R11]
          Length = 271

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL F  P    + RDD  V  +   AV ++D   +WP   ++L GP  SGK+ L ++W
Sbjct: 2   AQQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           +  S +        +  ++      P+ +ED+  +  N      LFH+ N +     +L+
Sbjct: 62  ASNSGAQILPAWQLTKAAVPQLAEGPIAIEDVPDIADNTEAQDALFHLHNLVLANGHALM 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T R  P  WG+ LPDL SR++ A   ++  PDD  L  V+ K+F DRQI     +  Y+
Sbjct: 122 LTGRAAPRLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           V  M+RS   A ++V+++D L+L+ G  ++R+LA +++ +  Q
Sbjct: 182 VAHMDRSFAAASQIVEELDQLSLAEGRMVSRALAVQLMSDRPQ 224


>gi|39936112|ref|NP_948388.1| hypothetical protein RPA3049 [Rhodopseudomonas palustris CGA009]
 gi|39649966|emb|CAE28490.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 229

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 132/226 (58%), Gaps = 1/226 (0%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           ++    + +  QL    P    +SR+D L  SA   A+ LI+SWP WP+R+++LVGP GS
Sbjct: 2   ERPVPVRVEPRQLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGS 61

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIH 134
           GKS LA IW++ + +   +  A +  ++        V++ED+    F++  LFH++N   
Sbjct: 62  GKSHLAAIWAELAGARSTAAQALNAAAVPGALATGAVVVEDLVPGSFDERALFHLMNMAR 121

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           + ++ +L T R  P +  + L DL SRL+   VV +  PDD     +IVK  ADRQ+ ID
Sbjct: 122 EDEAYVLFTGRVEPSALSIELRDLKSRLRTVPVVSLLPPDDALFRALIVKFCADRQMCID 181

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             L  Y+  R++RS V A ++V+K+D  AL  G  +TR+LA+EVL+
Sbjct: 182 AALVGYLANRIDRSFVAARQVVEKLDTTALRLGRPVTRALASEVLR 227


>gi|163740900|ref|ZP_02148293.1| hypothetical protein RG210_13706 [Phaeobacter gallaeciensis 2.10]
 gi|161385891|gb|EDQ10267.1| hypothetical protein RG210_13706 [Phaeobacter gallaeciensis 2.10]
          Length = 256

 Score =  262 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 3/220 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL F  P    + RDD  V  +   AV ++D   +WP   ++L GP  SGK+ L ++W
Sbjct: 2   AQQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           +  S +        + + +      P+ +ED+  +  +      LFH+ N +     +L+
Sbjct: 62  ASNSGAQIIPAWQLTKEDVPHLADGPIAVEDVPDIADSAPAQDALFHLHNLVLANGHALM 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T R  P  WG+ LPDL SR++ A   ++  PDD  L  V+ K+F DRQI     +  Y+
Sbjct: 122 LTGRAAPHLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           V  M+RS   A ++V+++D L+L+ G  ++R LA E++ +
Sbjct: 182 VAHMDRSFAAASQIVEELDRLSLTEGRMVSRVLAVELMSD 221


>gi|254473332|ref|ZP_05086729.1| ATP/GTP-binding protein [Pseudovibrio sp. JE062]
 gi|211957448|gb|EEA92651.1| ATP/GTP-binding protein [Pseudovibrio sp. JE062]
          Length = 226

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
              +QL    P    +  DD LV ++ + A  L+ +WP WPS +V L GP GSGK+ L N
Sbjct: 5   TGPQQLPLVLPHEEALGVDDYLVSTSNQAAFNLVTNWPEWPSPIVTLQGPIGSGKTHLVN 64

Query: 83  IWSDKSRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
            W + S +        + LD   +    PV +ED+    F++  LFH+ N++     ++L
Sbjct: 65  AWQELSGAQIVGGDELEYLDLTALAEAGPVAVEDLHA-GFDEASLFHLFNAVRLTGGNML 123

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT R +P ++ +   DL SR +AAT V++  PDD  L  V+ K F+DRQ+ +D  +  Y+
Sbjct: 124 MTTREWPHTFDLKTKDLASRFRAATPVQVEEPDDMLLAMVMTKHFSDRQVTVDSSVIDYL 183

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           V R+ERSL  A  +VD +D  AL+ G  I+R +A+++L+   +
Sbjct: 184 VIRIERSLDAARNVVDMLDRHALATGRKISRVMASKILESMGE 226


>gi|192291830|ref|YP_001992435.1| hypothetical protein Rpal_3459 [Rhodopseudomonas palustris TIE-1]
 gi|192285579|gb|ACF01960.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 225

 Score =  261 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 130/220 (59%), Gaps = 1/220 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           + +  QL    P    +SR+D L  SA   A+ LI+SWP WP+R+++LVGP GSGKS LA
Sbjct: 4   RVEPRQLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGSGKSHLA 63

Query: 82  NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
            IW++ + +   +  A +  S+        V++ED+    F++  LFH++N   + ++ +
Sbjct: 64  AIWAELAGARSTAAQALNAASVPGALATGAVVVEDLVPGSFDERALFHLMNMAREDEAYV 123

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L T R  P +  + L DL SRL+   VV +  PDD     +IVK  ADRQ+ ID  L  Y
Sbjct: 124 LFTGRVEPSALSIDLRDLKSRLRTVPVVSLLPPDDALFRALIVKFCADRQMCIDAALVGY 183

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +  R++RS V A ++V+K+D  AL  G  +TR+LA+EVL+
Sbjct: 184 LANRIDRSFVAARQVVEKLDTTALRLGRPVTRALASEVLR 223


>gi|83954040|ref|ZP_00962760.1| hypothetical protein NAS141_17079 [Sulfitobacter sp. NAS-14.1]
 gi|83841077|gb|EAP80247.1| hypothetical protein NAS141_17079 [Sulfitobacter sp. NAS-14.1]
          Length = 227

 Score =  261 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL    P    + RDD  V  +   AV +I+ W +W  R ++L GP GSGK+ LA++W
Sbjct: 2   AQQLGLDLPSRPALGRDDFFVAPSNAIAVAMIEGWQAWAGRKMVLTGPPGSGKTHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           ++ S +        +   I    + P+ +E++  +  +   +T LFH+ N +     SLL
Sbjct: 62  ANLSGAGIIDARDIATGDIPALAQGPLAVENVPDIAGDNAAETHLFHLHNLVLAEGHSLL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T       WG+ LPDL SR++AAT   +  PDD  L  V+ K+ ADRQ+     +  Y+
Sbjct: 122 LTGTPAVPQWGLHLPDLTSRMRAATAAALEAPDDSLLTAVMAKLLADRQLTPKPDVIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + RM+RS   A +LV  +D  +L++   +TR+LAA+VL  
Sbjct: 182 LLRMDRSFAAAGELVAALDAASLAQQKPVTRALAAQVLDN 221


>gi|121602210|ref|YP_989063.1| hypothetical protein BARBAKC583_0767 [Bartonella bacilliformis
           KC583]
 gi|120614387|gb|ABM44988.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
          Length = 229

 Score =  261 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +E QL    P       D+L+V  +   A +LID+WP+W   + ILVG  GSGK+  ++
Sbjct: 3   EREVQLPLDLPYESVFCFDNLVVTDSNRMAFQLIDNWPNWILPIAILVGKEGSGKTHFSS 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137
           +W+ K+ +             L+ + K +L+E+ID    ++T LFH+INSI Q       
Sbjct: 63  VWAQKANALTVDREDIDRVISLVSSGKSLLIENIDAGQISETGLFHLINSIQQANLDARQ 122

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           ++LL+TART P +W + L DL SRL +  +V I+ PDD  L  V  K+F+DRQI +   +
Sbjct: 123 TNLLITARTVPSTWNLKLNDLKSRLNSVMLVAINQPDDALLTAVAFKLFSDRQIAVHSDI 182

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             Y+V R ERSL   +++VD +D LAL R   ITR++  E +    Q
Sbjct: 183 IHYLVTRCERSLFALQRVVDSVDRLALQRKSKITRTVIGEAINMQMQ 229


>gi|163733468|ref|ZP_02140911.1| hypothetical protein RLO149_17493 [Roseobacter litoralis Och 149]
 gi|161393256|gb|EDQ17582.1| hypothetical protein RLO149_17493 [Roseobacter litoralis Och 149]
          Length = 227

 Score =  261 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            EQL F  P    + R D LV  +   AV LI+ W  WP R ++L GP+GSGK+ LA++W
Sbjct: 2   PEQLGFDLPGITALGRADFLVAPSNAVAVALIEGWQDWPGRKLVLSGPAGSGKTHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           +  S +        +   I    R+ V +ED+  +  N   +T LFH+ N      ++LL
Sbjct: 62  AALSGAEICEAQTLAAQDIPELARRSVAIEDVPAIAGNTEAETALFHLHNLALAEGNALL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
            T    P +W + LPDL SR++      + LPDD  L  V+ K+FADRQ+     L AY+
Sbjct: 122 FTGEAAPGAWHLELPDLKSRIEGTQAASLHLPDDALLSAVLAKLFADRQLMPKPDLIAYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + R++RS   A ++V  +D  +L++   ++R LAA VL +  Q
Sbjct: 182 ILRIDRSFAAARRIVAALDAASLAQKRPLSRQLAAAVLDKEDQ 224


>gi|299133727|ref|ZP_07026921.1| chromosomal replication initiator, DnaA [Afipia sp. 1NLS2]
 gi|298591563|gb|EFI51764.1| chromosomal replication initiator, DnaA [Afipia sp. 1NLS2]
          Length = 229

 Score =  261 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +    QL    P    +SRDD L   +  QA+ L++ WP W +RV++LVGP G GKS LA
Sbjct: 3   RTPPRQLALELPHAESLSRDDYLEGPSNVQALGLVERWPDWSNRVMMLVGPEGCGKSHLA 62

Query: 82  NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
            IW+  S +      A +   +        +++E ++   F++  +FH++N   + ++ +
Sbjct: 63  AIWAAISGARIVGAHALTSADVPASLATGALVVEHLEPGHFDERAIFHLLNLARETNAFV 122

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           LMTAR  P S+ + L D  SRL+A  VV +  PDD  L  ++VK  ADRQ+ +D+ +  Y
Sbjct: 123 LMTARMAPASFEIELRDAGSRLRAIPVVTVEPPDDQLLRALLVKFCADRQMAVDEGVVGY 182

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +   +ERS   A + V+ +D  AL +   ITR+LAA + +  
Sbjct: 183 LATHIERSFAAARQAVELLDAEALRQRRPITRALAATLFRGQ 224


>gi|83942870|ref|ZP_00955330.1| hypothetical protein EE36_11853 [Sulfitobacter sp. EE-36]
 gi|83845878|gb|EAP83755.1| hypothetical protein EE36_11853 [Sulfitobacter sp. EE-36]
          Length = 227

 Score =  260 bits (666), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL    P    + RDD  V  +   AV +I+ W +W  R ++L GP GSGK+ LA++W
Sbjct: 2   AQQLGLDLPSRPALGRDDFFVAPSNAIAVAMIEGWQAWAGRKMVLTGPPGSGKTHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           ++ S +        +   I    + P+ +E++  +  +   +T LFH+ N +     SLL
Sbjct: 62  ANLSGAGIIDARDIATGDIPALAQGPLAVENVPDIAGDNAAETHLFHLHNLVLAEGHSLL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T       WG+ LPDL SR++AAT   +  PDD  L  V+ K+ ADRQ+     +  Y+
Sbjct: 122 LTGTPAVPQWGLHLPDLTSRMRAATAAALEAPDDSLLTAVMAKLLADRQLTPKPDVIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + RM+RS   A  LV  +D  +L++   +TR+LAA+VL  
Sbjct: 182 LLRMDRSFAAAGDLVAALDAASLAQQKPVTRALAAQVLDN 221


>gi|90423831|ref|YP_532201.1| hypothetical protein RPC_2328 [Rhodopseudomonas palustris BisB18]
 gi|90105845|gb|ABD87882.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas
           palustris BisB18]
          Length = 225

 Score =  260 bits (666), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 133/222 (59%), Gaps = 1/222 (0%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           + +  QL  + P    +SRDD L   +  +A++LID WP WP+RV++L GP GSGKS L+
Sbjct: 4   RVQPRQLALALPHAESLSRDDFLEGPSNSEALKLIDHWPDWPNRVMLLTGPEGSGKSHLS 63

Query: 82  NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           +IW++++ +   +  A +  ++        +++ED+     ++  LFH++N   +  + +
Sbjct: 64  SIWAEQAGARAITAHALTSSAVPGALATGALVVEDLCPPCIDERALFHLLNLAREDQAYV 123

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+R  P +  V L DL SRL+A   V +  PDD     +IVK  ADRQ+ +D+ L ++
Sbjct: 124 LITSRLPPSALEVDLRDLRSRLRAVPAVTLLPPDDQLFRALIVKFCADRQMSVDESLVSF 183

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  R++RS + A + V+++D  AL  G  +TR+LAAE+ ++ 
Sbjct: 184 VANRIDRSFIAARQAVERLDTEALRLGRPVTRALAAELFRDL 225


>gi|75675787|ref|YP_318208.1| hypothetical protein Nwi_1595 [Nitrobacter winogradskyi Nb-255]
 gi|74420657|gb|ABA04856.1| regulatory inactivation of DnaA Hda protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 226

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 132/223 (59%), Gaps = 1/223 (0%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
             +    QL F+ P     SRDD L   A   A+ LI+SWP WP+R+++L GP G GKS 
Sbjct: 2   AGRPPSRQLAFTLPHAESFSRDDFLEGPANAAALSLIESWPEWPNRIMLLAGPEGCGKSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138
           LA IW++++ +   S    +  ++ +  T   +++ED++   F++  LFH++N   +  +
Sbjct: 62  LAAIWAERAGARSISAQGLTAATVPMALTTGALVVEDLNPKTFDELALFHLMNLAREEAA 121

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            +LMTAR  P +  + L DL SRL+A  VV +  PDD  L  +IVK  ADRQ+ ID+ + 
Sbjct: 122 FVLMTARVTPAAIEIGLRDLRSRLRAVPVVTLMPPDDHLLRALIVKFSADRQMNIDEAIV 181

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++I  R ERS+  A   V+++D  +L  G  +TR+LAAE+L+ 
Sbjct: 182 SFIATRTERSVAAARLAVEQLDAESLRLGRPVTRALAAELLRN 224


>gi|114764028|ref|ZP_01443269.1| hypothetical protein 1100011001340_R2601_19280 [Pelagibaca
           bermudensis HTCC2601]
 gi|114543620|gb|EAU46634.1| hypothetical protein R2601_19280 [Roseovarius sp. HTCC2601]
          Length = 233

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 3/222 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL    P    + R+D  V  +   AV L+D+W SWP+  ++LVGPSG+GK+ LA++W
Sbjct: 4   PDQLPLPLPVRAALGREDYFVGQSNGLAVALLDNWQSWPNGKMVLVGPSGAGKTHLAHVW 63

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           + ++ +      +     I      P+ +ED D +  +   +  LFH+ N        LL
Sbjct: 64  AAETGAAIVPAASLPQADIPAHATAPICVEDGDRIAGDRPAEEALFHLHNLALAQRQPLL 123

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +TAR+ P  W + +PDL SR++      +  PDD  L  VI KM ADRQ      +  Y+
Sbjct: 124 VTARSAPSLWPLVIPDLKSRMEGTQTATLPDPDDTLLAAVIAKMLADRQCVPAADVIPYL 183

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           V+ M RS   A  LV  +D  A+ R  GITRSLA ++L    
Sbjct: 184 VRHMPRSFAMARALVTALDANAMGRPKGITRSLARDILARLD 225


>gi|288958155|ref|YP_003448496.1| chromosomal replication initiator [Azospirillum sp. B510]
 gi|288910463|dbj|BAI71952.1| chromosomal replication initiator [Azospirillum sp. B510]
          Length = 235

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             Q+         +  +D LV  +   AV  +D WPSWP+  + L GP+G GK+ LA +W
Sbjct: 4   PAQIPLDLGHRTAMGCEDFLVAPSNADAVAWLDRWPSWPAPALTLFGPAGCGKTHLAQVW 63

Query: 85  SDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSS 139
              S +  TR   +   +   L+     V++ED DL+      +  LFH+ N   +    
Sbjct: 64  RAHSHALVTRGDALESGVVPSLLAPANAVVVEDADLVAGKPEREEALFHLYNLAREQRGH 123

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LL+ +R  P  W   L DL SRLK A  V++  PDD  L  V+VK+FADRQ+    ++  
Sbjct: 124 LLLLSRKAPSRWRTKLADLRSRLKGAPAVEVRPPDDALLAAVLVKLFADRQLRPGMEVIT 183

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           Y++ RMERSL FA +LV  +D+ +L+   G+T  LA EVL + Q+ 
Sbjct: 184 YLLARMERSLDFARRLVAALDHASLAAHRGVTVPLAREVLSDLQRS 229


>gi|27379234|ref|NP_770763.1| hypothetical protein bll4123 [Bradyrhizobium japonicum USDA 110]
 gi|27352385|dbj|BAC49388.1| bll4123 [Bradyrhizobium japonicum USDA 110]
          Length = 225

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
             +    QL FS P    +SRD+ L   A    + LID WP WP+R++ L GP GSGKS 
Sbjct: 2   AGRVHPRQLAFSLPHAESLSRDNFLEGPANAAGLALIDGWPEWPNRIMWLAGPEGSGKSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138
           LA IW++++ +   +  A S   +        +++ED+   DF++  LFH++N   +  +
Sbjct: 62  LAAIWAEEAGARSTTANALSAAGVPGALATGALVVEDLKAKDFDERALFHLMNLAREDGA 121

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            +L T R  P +  + L DL SRL+A  VV +  PDD     +IVK  ADRQ+ +D+ + 
Sbjct: 122 YVLFTGRDVPAALDIELNDLRSRLRAVPVVMLLPPDDQLFRGLIVKFCADRQLTVDESVV 181

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +Y+  R+ERS   A + V+ +D+ AL  G  +TR+LAAE+L++ 
Sbjct: 182 SYLATRLERSSAAARQAVELLDSEALRLGRPVTRALAAELLRDA 225


>gi|148255247|ref|YP_001239832.1| regulatory inactivation of DnaA Hda protein [Bradyrhizobium sp.
           BTAi1]
 gi|146407420|gb|ABQ35926.1| regulatory inactivation of DnaA Hda protein [Bradyrhizobium sp.
           BTAi1]
          Length = 228

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 1/222 (0%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
              QL F+ P    ++RD+ L  +     + L+D+WP WP+R + LVGP GSGKS LA I
Sbjct: 6   PPRQLAFALPHAESLTRDNFLEGAGNAAGLALVDAWPEWPARTMFLVGPDGSGKSHLAAI 65

Query: 84  WSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
           W+++S +   S  A  + ++        ++LED+    F++  LFH++N   Q ++ +L+
Sbjct: 66  WAEQSGARSLSAQALDIAAVPRALATGALVLEDLSPTAFDERALFHLLNLARQDEAYILI 125

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TAR  P +  V L DL SRL+A  VV +  PDD     +IVK+ ADRQ+ ID+ + +Y+ 
Sbjct: 126 TAREAPATMPVALSDLRSRLRACPVVTLLPPDDQLFRALIVKLAADRQLTIDEAVVSYLA 185

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            R+ERS   A + V  +DN +L  G  +TR+LAAE+L+ ++ 
Sbjct: 186 TRIERSYAAARQTVALLDNESLRLGRPVTRALAAELLRPSEG 227


>gi|126735140|ref|ZP_01750886.1| hypothetical protein RCCS2_14724 [Roseobacter sp. CCS2]
 gi|126715695|gb|EBA12560.1| hypothetical protein RCCS2_14724 [Roseobacter sp. CCS2]
          Length = 219

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 78/216 (36%), Positives = 123/216 (56%), Gaps = 3/216 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F +P  + +  DD  V  A  QA  ++ +  +WP + + L+GPSG GKS L+ ++  
Sbjct: 4   QLAFDWPTGVALGPDDFFVSDANAQAFAMLSTPEAWPEQKLALIGPSGCGKSHLSRVFQA 63

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSSLLMTAR 145
           +S +     +A  + +        V++ED++ L    +  +FH+ N++     SLL+T+ 
Sbjct: 64  QSDAFLI--VASEISATFQTDASTVIIEDMETLPSAAEEAVFHLHNNLRNAGGSLLLTSD 121

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P  W + LPDL SR++A TVV+I  PDD  L  +I+K+FADRQI     L  Y+  R+
Sbjct: 122 HPPSRWPITLPDLASRMQATTVVQIDNPDDALLSALIMKLFADRQINPQPALVQYLSTRI 181

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ERS   A  +V ++D  AL++G  I +SLAAE+L  
Sbjct: 182 ERSFAAAADIVARLDAAALAQGRKINKSLAAELLDN 217


>gi|218530297|ref|YP_002421113.1| chromosomal replication initiator DnaA [Methylobacterium
           chloromethanicum CM4]
 gi|218522600|gb|ACK83185.1| chromosomal replication initiator DnaA [Methylobacterium
           chloromethanicum CM4]
          Length = 252

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 128/229 (55%), Gaps = 2/229 (0%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           +     +QL F  P       +D LV  + E+A  LI++WP WP  V +L GP GSGKS 
Sbjct: 2   RDTEPPKQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF-NDTQLFHIINSIHQYD 137
           LA+IW+ ++++   S    ++D +  + +   +++ED+D     +++ LFH++N   +  
Sbjct: 62  LASIWATRAQAWTVSAADVAMDRVSHLISNGALVVEDVDRAAGRDESALFHLLNLARERR 121

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             +L+TA      +G+ + DL SRL+ A   +I  PDD  L+ VIVK+FADRQ+ ID  +
Sbjct: 122 FPVLLTACGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSV 181

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              +  R++RSL    ++V ++D  AL R   ITR LA  VL   +  D
Sbjct: 182 VDALALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230


>gi|254561253|ref|YP_003068348.1| hypothetical protein METDI2832 [Methylobacterium extorquens DM4]
 gi|254268531|emb|CAX24488.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 252

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 2/229 (0%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           +     +QL F  P       +D LV  + E+A  LI++WP WP  V +L GP GSGKS 
Sbjct: 2   RDTEPPKQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF-NDTQLFHIINSIHQYD 137
           LA+IW+ ++++   S    ++D +  + +   +++ED+D     ++  LFH++N   +  
Sbjct: 62  LASIWATRAQAWTVSAADVAMDRVSHLISNGALVVEDVDRAAGRDEAALFHLLNLARERR 121

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             +L+TA      +G+ + DL SRL+ A   +I  PDD  L+ VIVK+FADRQ+ ID  +
Sbjct: 122 FPVLLTACGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSV 181

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              +  R++RSL    ++V ++D  AL R   ITR LA  VL   +  D
Sbjct: 182 VDALALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230


>gi|163851490|ref|YP_001639533.1| chromosomal replication initiator DnaA [Methylobacterium extorquens
           PA1]
 gi|240138655|ref|YP_002963127.1| hypothetical protein MexAM1_META1p2048 [Methylobacterium extorquens
           AM1]
 gi|163663095|gb|ABY30462.1| chromosomal replication initiator DnaA [Methylobacterium extorquens
           PA1]
 gi|240008624|gb|ACS39850.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 252

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 2/229 (0%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           +     +QL F  P       +D LV  + E+A  LI++WP WP  V +L GP GSGKS 
Sbjct: 2   RDTEPPKQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF-NDTQLFHIINSIHQYD 137
           LA+IW+ ++++   S    ++D +  + +   +++ED+D     ++  LFH++N   +  
Sbjct: 62  LASIWATRAQAWTVSAADVAMDRVSHLISNGALVVEDVDRAAGRDEAALFHLLNLARERR 121

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             +L+TA      +G+ + DL SRL+ A   +I  PDD  L+ VIVK+FADRQ+ ID  +
Sbjct: 122 FPVLLTACGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSV 181

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              +  R++RSL    ++V ++D  AL R   ITR LA  VL   +  D
Sbjct: 182 VDALALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230


>gi|84501589|ref|ZP_00999761.1| hypothetical protein OB2597_15345 [Oceanicola batsensis HTCC2597]
 gi|84390210|gb|EAQ02769.1| hypothetical protein OB2597_15345 [Oceanicola batsensis HTCC2597]
          Length = 226

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
           L  + PR  G++R D +V  +   A+ +ID W  WP   ++L GP GSGK+ LA+IW+ +
Sbjct: 5   LPLTHPRLPGLTRSDFVVAPSNAVALAMIDQWRDWPGGKLVLTGPPGSGKTHLAHIWAAE 64

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTAR 145
           + +   +       ++       +++ED D +        LFH+ N + +    LL+T  
Sbjct: 65  ANARILAARDLERAAVPELASTALVVEDADAIPDAAPQDALFHLHNLMREAQRPLLLTGS 124

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
               SW + LPDL SRL+ A    +  PDD  L  V+VK+F +RQ+ +  ++  Y+++RM
Sbjct: 125 RAVASWPLTLPDLKSRLQGAQSAVLDRPDDTLLNAVLVKLFIERQLQVSPQVVHYLLRRM 184

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           +RS   A ++V+ +D  +L++   IT  LAAEVL + +  +
Sbjct: 185 DRSFDAARRVVEALDFASLAQRRAITTRLAAEVLDKIEGAE 225


>gi|85717202|ref|ZP_01048159.1| hypothetical protein NB311A_18728 [Nitrobacter sp. Nb-311A]
 gi|85695982|gb|EAQ33883.1| hypothetical protein NB311A_18728 [Nitrobacter sp. Nb-311A]
          Length = 226

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 1/225 (0%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
             +    QL F+ P     SRDD L   A   A+ LI+SWP WP+R+++L GP G GKS 
Sbjct: 2   AGRPPSRQLAFALPHAESFSRDDFLEGHANAAALSLIESWPEWPNRIMLLAGPEGCGKSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138
           LA IW++ + +   S    +  ++ +      +++ED++   F++  LFH++N   +  +
Sbjct: 62  LAAIWAELAGARSISAQGLTAATVPMALATGALVVEDLNPQTFDELALFHLMNLAREETA 121

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            +L+TAR  PV+  + L DL SRL+A  VV +  PDD     +IVK  ADRQ+ ID+ + 
Sbjct: 122 FVLITARVTPVAIEIGLRDLRSRLRAVPVVTLMPPDDQLFRALIVKFSADRQMNIDEAVV 181

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             I  R ERS   A   V ++D  +L  G  +TR+LAAE+L+   
Sbjct: 182 NLIATRTERSFAAARLAVQRLDTESLRLGRPVTRALAAELLRNYD 226


>gi|110679324|ref|YP_682331.1| hypothetical protein RD1_2043 [Roseobacter denitrificans OCh 114]
 gi|109455440|gb|ABG31645.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 227

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            EQL    P    + R D LV  +   AV LI+ W  WP R ++L GP+GSGK+ LA++W
Sbjct: 2   PEQLGLDLPGITALGRADFLVAPSNALAVALIEGWQDWPGRKLVLSGPAGSGKTHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           +  S +            I    R+ V +ED+  +  N   +T LFH+ N      ++LL
Sbjct: 62  AALSGAEICPARDLVGQDIPDLARRSVAIEDVPDIAGNAQAETALFHLHNLALAEGNALL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
            T    P +W + LPDL SR++    V + LPDD  L  V+ K+FADRQ+    +L AY+
Sbjct: 122 FTGEAAPRAWHLNLPDLKSRIEGTQAVSLDLPDDALLSAVLAKLFADRQLTPKPELIAYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + R++RS   A ++V  +D  +L++   ++R LAA VL +  Q
Sbjct: 182 ILRIDRSFAAARRIVAALDAASLAQKRPLSRQLAAAVLDKEDQ 224


>gi|126725675|ref|ZP_01741517.1| hypothetical protein RB2150_05703 [Rhodobacterales bacterium
           HTCC2150]
 gi|126704879|gb|EBA03970.1| hypothetical protein RB2150_05703 [Rhodobacterales bacterium
           HTCC2150]
          Length = 226

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 2/220 (0%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            EQL F  P    + R D  +  + + AV +++ W  WP R VIL G +GSGKS LA IW
Sbjct: 2   AEQLIFDLPVKQALGRADFFISPSNQHAVAMLEGWRDWPERKVILTGAAGSGKSHLAQIW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDTQLFHIINSIHQYDSSLLM 142
           +D+  +         L  +       +++ED D  L    +T LFH+ N +      L++
Sbjct: 62  ADEVGARIVPATEVPLLMMEELDGSSIIVEDADQPLEMAAETGLFHLHNLVLASGGYLMV 121

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TA+T P  WG+ L DL SR+ A     +  PD+  L+ V++K F D Q+    KL  Y++
Sbjct: 122 TAKTPPSQWGLKLADLNSRMLATPQAALLAPDEGLLQAVLMKHFDDHQLSATPKLLTYML 181

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +RM RSL  A ++VD+MD LALS+   ++  LA+EVL + 
Sbjct: 182 KRMTRSLSAAREIVDEMDRLALSQKRKLSIELASEVLDKL 221


>gi|307946765|ref|ZP_07662100.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4]
 gi|307770429|gb|EFO29655.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4]
          Length = 225

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 89/223 (39%), Positives = 129/223 (57%), Gaps = 2/223 (0%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
               QL    P    + RDD LV  + + A  L++SWP+WPS VVIL GP G+GK+ L  
Sbjct: 3   EPPRQLPLDLPYEAALGRDDYLVGRSNQAAYELLESWPNWPSPVVILAGPVGAGKTHLVE 62

Query: 83  IWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
                S +   +       S+  +     V++ED      N+T LFH++N+  Q    +L
Sbjct: 63  ALRADSGAAVVAAPKLEEASVPDLVAAGSVVVEDAHQ-GVNETALFHLLNAARQAGVLVL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T+RT+P +W + LPDL SRL+AAT V+I  PDDD L +V++K+F+DRQ+ +D  +  Y+
Sbjct: 122 ITSRTWPATWSIQLPDLLSRLRAATPVEILEPDDDLLRQVLLKLFSDRQLAVDFAVIDYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           V RMERSL  A   VD +D  AL+  + IT+ LA +VL   Q 
Sbjct: 182 VVRMERSLEVAINAVDAIDREALAGRVKITKQLAGKVLDRVQG 224


>gi|188581279|ref|YP_001924724.1| chromosomal replication initiator DnaA [Methylobacterium populi
           BJ001]
 gi|179344777|gb|ACB80189.1| chromosomal replication initiator DnaA [Methylobacterium populi
           BJ001]
          Length = 252

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 2/225 (0%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
             +QL F  P       +D LV  + E+A  LI++WP WP  V +L GP GSGKS LA+I
Sbjct: 6   PPQQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSHLASI 65

Query: 84  WSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF-NDTQLFHIINSIHQYDSSLL 141
           W+ ++++   S    +  ++  + +   +++ED+D     ++  LFH++N   +    +L
Sbjct: 66  WATRAQAWTVSAADVAGTNVSHLISNGALVVEDVDREAGRDEAALFHLLNLARERRFPVL 125

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +TA      +G+ + DL SRL+ A   +I  PDD  L+ VIVK+FADRQ+ ID  +   +
Sbjct: 126 LTACGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSVVDAL 185

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             R++RSL    ++V ++D  AL R   ITR LA  VL      D
Sbjct: 186 ALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMAAAD 230


>gi|56696015|ref|YP_166369.1| hypothetical protein SPO1118 [Ruegeria pomeroyi DSS-3]
 gi|56677752|gb|AAV94418.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 225

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL F  P    + R+D  V  A   AV +I +   WP   ++L GP+G+GK+ LA++W
Sbjct: 2   ARQLSFDLPAMTALGREDFFVSPANALAVAMISA-RIWPGGKLVLTGPAGAGKTHLAHVW 60

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLL 141
           + ++ +      A     I      PV +ED+ LL  +D +   LFH+ N        LL
Sbjct: 61  ASETGARIIEATALVEADIPELAAGPVAVEDVPLLAGDDARQALLFHLHNLTLANGHPLL 120

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T R  P  W + LPDL SR+ AA  V +  PDD  L  V+ K+F DRQ+    ++ +Y+
Sbjct: 121 LTGRAAPGFWDLSLPDLQSRVDAAQHVALDPPDDALLGAVLAKLFVDRQLSPGPEVISYL 180

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           V+ M+RS   A + V  +D +AL     ITR+LA  +L      
Sbjct: 181 VKHMDRSFEAAARTVAALDRIALDEKRDITRALAVRLLSTQAGA 224


>gi|220925387|ref|YP_002500689.1| Chromosomal replication initiator DnaA [Methylobacterium nodulans
           ORS 2060]
 gi|219949994|gb|ACL60386.1| Chromosomal replication initiator DnaA [Methylobacterium nodulans
           ORS 2060]
          Length = 233

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 2/223 (0%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   QL    P       +D LV  + E A   I+SWP WP  V++L GPSGSGKS LA 
Sbjct: 3   DLPRQLTLDLPLDPRFGPEDFLVGPSNEAAYARIESWPHWPDPVLVLTGPSGSGKSHLAA 62

Query: 83  IWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF-NDTQLFHIINSIHQYDSSL 140
           +W+ +S +        +  ++  +     +++ED D     ++  LFH++N   +  +SL
Sbjct: 63  VWAAQSGARTVGIAEVTGAAVPQLAEHPALVIEDADRRSGRDEAALFHLLNLARERGTSL 122

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           ++T       WG+  PDL SRL+ A  V I+ PD+  L  V+VK+F DRQ+ +D  +   
Sbjct: 123 VITGAGAVEGWGIATPDLRSRLRLAPTVAIAPPDEALLRAVLVKLFVDRQLVVDTSVVDA 182

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +  R++RSL  A  +V  +D   L+RG  ITR LA   L    
Sbjct: 183 LALRIDRSLGRARDVVAALDREGLARGRRITRPLALATLASLD 225


>gi|254487899|ref|ZP_05101104.1| chromosomal replication initiator, DnaA [Roseobacter sp. GAI101]
 gi|214044768|gb|EEB85406.1| chromosomal replication initiator, DnaA [Roseobacter sp. GAI101]
          Length = 223

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 114/220 (51%), Gaps = 3/220 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL  + P    + RDD  V  +   A  +ID W +W  R + L GP GSGK+ L ++W
Sbjct: 2   AQQLGLALPSRAALGRDDFFVAPSNAIAAAMIDGWRTWAGRKLALTGPPGSGKTHLTHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           + +S +            I    R  V +ED+ L+  +    T LFH+ N +     SLL
Sbjct: 62  ATQSGARIIQARDLLRADIPDLARSCVAVEDVPLIARHPEAQTALFHLHNLVLAEGHSLL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T       W + LPDL SR++AA  V +  PDD  L  V+ K+ ADRQ+     L  Y+
Sbjct: 122 LTGAPAVAQWRLTLPDLASRMQAAGAVALEAPDDMLLTAVLAKLLADRQLTPRPDLIPYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + RM+RS   A  LV ++D  +L++   +TRSLAA+VL  
Sbjct: 182 LPRMDRSFAAAGDLVARLDAASLAQKKPVTRSLAAQVLDN 221


>gi|158422563|ref|YP_001523855.1| hypothetical protein AZC_0939 [Azorhizobium caulinodans ORS 571]
 gi|158329452|dbj|BAF86937.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 238

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKS 78
                +  QL    P    + R+D L       A+RLIDS+P W +RVV LVGP G+GKS
Sbjct: 2   SPRDTRPRQLPLDLPATSAMQREDFLEAPGNAAALRLIDSFPDWTARVVCLVGPPGTGKS 61

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137
            LA ++++++ +   S +  +  ++        +++ED++   F +  LFH++N   +  
Sbjct: 62  HLAAVFAERAGAATVSAVDLTRANVPEALAGGALVVEDLEPGHFEEAALFHLLNLAREQQ 121

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           + +LMTART P  W +   DL SRL+A     I   DD  L  V+VK+F+DRQI +D   
Sbjct: 122 AHVLMTARTAPAHWKLHTADLSSRLRALPTFFIEEADDALLAAVLVKLFSDRQIPVDDAT 181

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Y++ RM+R+   A  +V  +D  AL+    +TR+LAA+VL++ 
Sbjct: 182 VQYLLLRMDRTFEGARSVVQAIDRAALAAQRPVTRALAAQVLRDL 226


>gi|209964848|ref|YP_002297763.1| hypothetical protein RC1_1547 [Rhodospirillum centenum SW]
 gi|209958314|gb|ACI98950.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 238

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL         +   D LV      AV  +D+WP WP+  ++L GP GSGKS LA IW 
Sbjct: 6   KQLSLDLGHRSAMGEADFLVAPGNADAVAWLDAWPDWPAPALVLFGPPGSGKSHLAQIWR 65

Query: 86  DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSL 140
            +SR+         LDS+   +   + V+L+    +  +   +  LFH+ N+  +   SL
Sbjct: 66  ARSRAVLVEPDDLHLDSVPDLLRPMRTVVLDRAHEVAGDPARERVLFHLYNAAKEIGGSL 125

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+ A   PV+W + LPDL SRL AA  V ++ PDD  L  V+VK+FADRQI + + +  +
Sbjct: 126 LLLADNAPVNWVLRLPDLRSRLLAAPAVGMAAPDDALLMAVLVKLFADRQIRVGEDVIRW 185

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++ R ERS   A ++V+ +D  AL     IT      VL++  +
Sbjct: 186 LMTRTERSFANARRVVEALDRAALEAKKPITVPFCKAVLEQDAE 229


>gi|170743265|ref|YP_001771920.1| chromosomal replication initiator DnaA [Methylobacterium sp. 4-46]
 gi|168197539|gb|ACA19486.1| Chromosomal replication initiator DnaA [Methylobacterium sp. 4-46]
          Length = 233

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 113/213 (53%), Gaps = 2/213 (0%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
               QL    P       +D LV  + E A   I++WP WP  V++L GP GSGKS LA 
Sbjct: 3   EAPRQLALDLPLDPRFGPEDFLVGPSNEDAYARIEAWPDWPDPVLVLTGPPGSGKSHLAA 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKP-VLLEDIDLLDF-NDTQLFHIINSIHQYDSSL 140
           IW++++ +   +  A +  ++     +P +++ED D     ++  LFH++N   +    L
Sbjct: 63  IWAERAGARIVAAGAVTRAALPDLAGEPALVVEDADRPSGRDEPALFHLLNLARERGRGL 122

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           ++T       WG   PDL SRL+ A  + ++ PD+  L  V+VK+F DRQ+ +D  +   
Sbjct: 123 VVTGSGPVEGWGFATPDLRSRLRLAPTLGLAPPDEALLRAVLVKLFVDRQLVVDTSVVDA 182

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           +  R++RSL  A  +V  +D+  LSRG  ITR 
Sbjct: 183 LALRIDRSLGRARDVVAALDHEGLSRGRRITRP 215


>gi|163745973|ref|ZP_02153332.1| hypothetical protein OIHEL45_10313 [Oceanibulbus indolifex HEL-45]
 gi|161380718|gb|EDQ05128.1| hypothetical protein OIHEL45_10313 [Oceanibulbus indolifex HEL-45]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 3/219 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL  + P    + RD   V  +   A+ +ID W  W    + L GP GSGK+ L ++W
Sbjct: 2   AHQLGLNLPSRTALGRDAFFVAPSNAMAMAMIDGWRGWAGGKLALTGPQGSGKTHLTHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLL 141
           +D S +   S  A     I    R PV +ED+  +  +D     LFH+ N +     +LL
Sbjct: 62  ADLSGAQIISASALQTADIPALARGPVAVEDVHQIAQDDAAQTELFHLHNLVLAEGQALL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T       WG+ LPDL SR++ AT V++  PDD  L  ++VK+ ADRQ+    +L  Y+
Sbjct: 122 LTGTGVVAHWGLTLPDLVSRMRGATAVEMDAPDDALLSALLVKLLADRQLTPKPELINYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + RM+RS   A  LVD++D  +L++   +TR+LAA+VL 
Sbjct: 182 MTRMDRSFAAAIALVDRLDAASLAQKRPLTRALAAQVLD 220


>gi|182678282|ref|YP_001832428.1| chromosomal replication initiator DnaA [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634165|gb|ACB94939.1| Chromosomal replication initiator DnaA [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 232

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 2/229 (0%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           +PK    QL F          +D  V  + E A  +++ WP WP  V++L GP+G+GKS 
Sbjct: 2   RPKEPARQLTFDLAGDPCFGIEDFFVSESNENAYAMLELWPDWPDSVLLLRGPAGAGKSH 61

Query: 80  LANIWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137
           L  IW+ ++ +   +    A   D   +    P+L+ED D +   +  LFH++N +  + 
Sbjct: 62  LGAIWAARAGARILTARDFAAERDLESLARSGPLLIEDADAIGEAEASLFHLLNLVRHHH 121

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            +L++TAR  P  WG+ + DL SRL+ A V  I  PD+D +  ++VK+F DRQ+ +D  L
Sbjct: 122 HALVLTARRAPDFWGLRIADLLSRLRLAPVAAIEPPDEDLMRAILVKLFLDRQLVVDTGL 181

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             +    ++RS   A   V+++D  AL+RG  IT+SLA  VL+     +
Sbjct: 182 IEHAALHLDRSFEAARDFVERLDREALARGARITKSLAGTVLQSLIPPE 230


>gi|146340319|ref|YP_001205367.1| hypothetical protein BRADO3342 [Bradyrhizobium sp. ORS278]
 gi|146193125|emb|CAL77136.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 225

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 127/220 (57%), Gaps = 1/220 (0%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
              QL  + P    ++RD+ L        + L+D+WP WP+  + LVGP GSGKS LA I
Sbjct: 6   PPRQLALALPHAESLTRDNFLEGPGNAAGLALVDAWPEWPANTMFLVGPDGSGKSHLAAI 65

Query: 84  WSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
           W+++S +   S  A    ++        ++LED+   D ++  LFH++N   Q ++ +L+
Sbjct: 66  WAERSGARSLSAHALDAGAVPGALATGALVLEDLTAADLDERALFHLLNLARQDEAYILI 125

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TAR  PV+  + L DL SRL+A  V+ +  PDD     +IVK+ ADRQ+ ID+ + +Y+ 
Sbjct: 126 TAREAPVALPIALADLRSRLRAVPVITLLPPDDQLFRALIVKLAADRQLAIDETVVSYLA 185

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            R+ERS   A + +  +D+ +L  G  +TR+LAAE+L+  
Sbjct: 186 SRIERSYAAARQTIALLDDESLRLGRPVTRALAAELLRSA 225


>gi|304391981|ref|ZP_07373923.1| ATP/GTP-binding protein [Ahrensia sp. R2A130]
 gi|303296210|gb|EFL90568.1| ATP/GTP-binding protein [Ahrensia sp. R2A130]
          Length = 223

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 88/222 (39%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +  +QL    P     +R DL+V S+   A   +D+WP W + V +L GP+GSGKS LA+
Sbjct: 4   SPVDQLPLDLPTTAQAARADLVVASSNSHAAACVDAWPDWAAPVAVLAGPTGSGKSHLAS 63

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
           IWS  S +   S          +   + +LLED+    F+D  LFH +N+  Q   SLL+
Sbjct: 64  IWSSMSHAVVLSPGD------AVLAGRAMLLEDVTAGGFSDEWLFHAMNAAMQPGGSLLI 117

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T+R +P  WGV LPDL SRL+   +V++  P+D+ L  V+ K+FADRQ+ +D  +  Y +
Sbjct: 118 TSRQWPGEWGVSLPDLQSRLRLVHLVELHEPNDELLRGVLFKLFADRQLIVDAAVIDYCI 177

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            RMERSL  A  +V ++D L+L+R   IT+ L AE L+ T++
Sbjct: 178 TRMERSLASALAVVRQLDVLSLARKQAITKPLVAEALRMTEE 219


>gi|146276451|ref|YP_001166610.1| chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554692|gb|ABP69305.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 226

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 80/217 (36%), Positives = 122/217 (56%), Gaps = 4/217 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    +SR+D  V  A   A+  +D W  WP   ++LVGP GSGK+ LA++W+ 
Sbjct: 4   QLAFDLPMRPALSREDFFVSPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHVWAA 63

Query: 87  KSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142
           ++ +      A +   +  +     V +ED + L      +  LFH+ N + +   +LL+
Sbjct: 64  QAEARLIPAEALARADLPALAADGAVAVEDAERLGGERAAEEALFHLHNLMLERSGALLI 123

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TA T P  WG+ LPDL SR++AA V ++  PDD  L  ++VK+FADRQI +   L  ++V
Sbjct: 124 TADTPPRDWGLVLPDLKSRMQAAAVTRLEAPDDALLSAMLVKLFADRQIAVPGMLVPWLV 183

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            RM+RS   A  LV  +D  +L+    I+R +AAE+L
Sbjct: 184 ARMDRSCEAARALVAALDARSLAERRPISRQMAAELL 220


>gi|312112993|ref|YP_004010589.1| hypothetical protein Rvan_0200 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218122|gb|ADP69490.1| hypothetical protein Rvan_0200 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 232

 Score =  248 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 78/218 (35%), Positives = 124/218 (56%), Gaps = 2/218 (0%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    PR       D  V +  ++A  L+  WP W +   ++ GP  SGK+ LA+IW  
Sbjct: 4   QLVLDLPRRFAYDEADFFVTARNDRAFGLVCQWPDWHAPAAVIWGPPQSGKTYLAHIW-- 61

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
           ++R+        +L+  +   R+P++LED+D     +T LFH +N   ++ S +L+TART
Sbjct: 62  QARANAAFADPAALEGHVWAARQPLVLEDVDASALPETALFHHLNLAREHGSFILLTART 121

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P SW + LPDL SR+++    +I  PD++ L  +++K F+DR I I   + AY+VQR+E
Sbjct: 122 PPGSWRIALPDLRSRIRSYPTAEIQPPDEEHLAALLLKHFSDRGIEIAPDVIAYLVQRIE 181

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           RS+  A+ +   +D  AL+    ITR+ AA+VLK    
Sbjct: 182 RSMAAADAVASLLDKAALAERRRITRAFAAKVLKTVSG 219


>gi|84686213|ref|ZP_01014108.1| hypothetical protein 1099457000256_RB2654_08417 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665740|gb|EAQ12215.1| hypothetical protein RB2654_08417 [Rhodobacterales bacterium
           HTCC2654]
          Length = 227

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 3/224 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL F  P      R D  +  +   A+  ++ W  WPS  ++L GP GSGKS L  +W
Sbjct: 2   AHQLTFDLPVRTSRDRGDFFIADSNAVALAAVERWKDWPSAKMVLTGPDGSGKSHLVEVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           +  + +        +         + V +ED D +      +  LFH+ N +     SLL
Sbjct: 62  ATLTGAEIVPAGTLATLDTAALAGRSVAVEDADRVAGQPEAEAALFHLHNLVLAEGGSLL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T+R  P  WG+ LPDL SR++  ++V +  PD+  +  V+VK+F DRQI +   L AY+
Sbjct: 122 LTSRAAPTRWGLDLPDLASRMEGTSMVALETPDEALISAVLVKLFDDRQIAVSPNLVAYL 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             R+ RSL  A   V ++D++AL+    +TR+LAA +L +    
Sbjct: 182 APRLPRSLAAARDFVARLDDVALAEKRDVTRALAARLLDKDAGA 225


>gi|126463196|ref|YP_001044310.1| chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104860|gb|ABN77538.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/217 (35%), Positives = 122/217 (56%), Gaps = 4/217 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    +SR+D  +  A   A+  +D W  WP   ++LVGP GSGK+ LA+IW+ 
Sbjct: 4   QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63

Query: 87  KSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142
           ++ +      A +   +  +     V +ED + L  +   +  LFH+ N + +   +LL+
Sbjct: 64  QAEARLIPAEALARADLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALLI 123

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TA   P  WG+ LPDL SR++AA+V ++  PDD  L  ++VK+F DRQI +   L  ++V
Sbjct: 124 TAAGPPRDWGLGLPDLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWLV 183

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            RM+RS   A  LV  +D  +L+    I+R +AAE+L
Sbjct: 184 ARMDRSCEAARALVAALDARSLAERRPISRQMAAELL 220


>gi|170746927|ref|YP_001753187.1| chromosomal replication initiator DnaA [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653449|gb|ACB22504.1| Chromosomal replication initiator DnaA [Methylobacterium
           radiotolerans JCM 2831]
          Length = 236

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 2/225 (0%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           +      QL F  P      R+D LV  A E A  LI++WP WP  V++L GPSGSGKS 
Sbjct: 2   RENAPPRQLAFDLPLDPRFGREDFLVGPANEAAYALIEAWPDWPDSVLVLTGPSGSGKSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYD 137
           LA IW++++ +          D++  + +   +++EDID  +  ++  LFH++N   +  
Sbjct: 62  LAAIWAERAHAWTLPAAELGADAVQHLVSNGALVVEDIDRAERLDEAALFHLLNRARERR 121

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             +L+T+ T   + G+  PDL SRL+ A    I  PDD  L  V+VK+F DRQ+ +D  +
Sbjct: 122 CPVLLTSATGIDALGLGTPDLRSRLRLAPRSAIEAPDDALLRAVLVKLFVDRQLVVDLGV 181

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              +  R++RSL  A  +V ++D  AL RG  I+R LA  VL+  
Sbjct: 182 IDALALRIDRSLGRARDVVAELDRDALGRGRRISRPLALAVLRRM 226


>gi|154253765|ref|YP_001414589.1| chromosomal replication initiator DnaA [Parvibaculum
           lavamentivorans DS-1]
 gi|154157715|gb|ABS64932.1| Chromosomal replication initiator DnaA [Parvibaculum
           lavamentivorans DS-1]
          Length = 226

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL F         R+D LV    E AV LID+WP WP RVV L GP GSGK+ LA +W
Sbjct: 2   PRQLAFELGHRPAFGREDFLVAPPNEAAVALIDAWPDWPDRVVALSGPEGSGKTHLAEVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLM 142
            + + +   +  A +   +      + ++LED+   D    + LFH++N + +  + LL+
Sbjct: 62  RNAAGAVSLAPSALAGADVPALVAARTIILEDLAAPDAAAERALFHLVNLVREEGAFLLI 121

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TAR       + LPDL SRLKA    ++  PDD  L  ++VK+F DRQ+ +   + A++ 
Sbjct: 122 TARVPLSRLPLALPDLASRLKAVPQAELGPPDDALLAGILVKLFDDRQLRVAPAVIAWLA 181

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            R+ERS+  A   V ++D  +LS    IT  LAAE+L    +
Sbjct: 182 ARIERSVRAARDAVAELDRASLSGKRPITVPLAAEILGTQDE 223


>gi|300024349|ref|YP_003756960.1| chromosomal replication initiator, DnaA [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526170|gb|ADJ24639.1| chromosomal replication initiator, DnaA [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 224

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/219 (37%), Positives = 124/219 (56%), Gaps = 2/219 (0%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            EQL F  P    +  +D LV  +   AV LID WP WP    ILVGP GSGK+ LAN+W
Sbjct: 5   PEQLVFEMPHRAAMGLEDFLVSDSNAAAVALIDRWPDWPIGAAILVGPRGSGKTHLANVW 64

Query: 85  SDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
             +S +      + + +++  + +   V++E+I+ L  ++  LFH++N + +    +L+T
Sbjct: 65  QLRSEAALHPAASLTRENVPAVASAGAVIIENIETLT-DEAALFHLLNLVREQRLQVLLT 123

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
             T P    + LPDL SRLKA  +  I  PDD  L  V+VK+FADRQ+ ++  +  Y++ 
Sbjct: 124 TDTAPGDLKIALPDLLSRLKALPLASIEAPDDALLRAVLVKLFADRQLSVEPHIVDYVLV 183

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           RMERS+  AE+ V + D  AL     +TR++AA  L   
Sbjct: 184 RMERSMSAAERFVAEADRQALVLQRRVTRAIAAAALDSL 222


>gi|209885461|ref|YP_002289318.1| chromosomal replication initiator, DnaA [Oligotropha
           carboxidovorans OM5]
 gi|209873657|gb|ACI93453.1| chromosomal replication initiator, DnaA [Oligotropha
           carboxidovorans OM5]
          Length = 230

 Score =  245 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
               QL    P    +SRDD L   +  QA+ LID WP W +RV++LVGP G GKS LA 
Sbjct: 5   TPPRQLALDLPHAESLSRDDYLEGPSNAQALALIDRWPDWTNRVMMLVGPEGCGKSHLAA 64

Query: 83  IWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
           IW+ ++ +      A +   +        +++E ++   F++  +FH++N   + ++ +L
Sbjct: 65  IWAAEAGARIVGAHALTPQDVPGALATGALVVEHLEPGYFDERAVFHLLNLARETNAFVL 124

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MTAR  P S+ V L D  SRL+A  VV +  PDD  L  ++VK  ADRQ+ +D+ + +Y+
Sbjct: 125 MTARAAPASFEVELRDAGSRLRAIPVVSVEPPDDQLLRALLVKFCADRQMAVDESVVSYL 184

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             R+ERS   A   V+++D  AL     +TR+LAA + +  
Sbjct: 185 ATRIERSFAAARDAVEQLDAEALRLRRPVTRALAAALFRGQ 225


>gi|323137708|ref|ZP_08072784.1| Chromosomal replication initiator DnaA [Methylocystis sp. ATCC
           49242]
 gi|322397005|gb|EFX99530.1| Chromosomal replication initiator DnaA [Methylocystis sp. ATCC
           49242]
          Length = 234

 Score =  245 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 128/220 (58%), Gaps = 2/220 (0%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
               QL    P      RDD L  +    A+ +++ WP WP R++ L+GP GSGKS L  
Sbjct: 6   RGPAQLPLELPVEPRFGRDDFLPAACNRAALAMVERWPDWPDRILSLIGPPGSGKSHLLA 65

Query: 83  IWSDKSRSTRFSNIAK-SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
           IW++ + + R   +   +L+++       ++++D+D +  ++T LFH++N   ++   LL
Sbjct: 66  IWAESAGALRVDPVTLPTLEALNAAAPAAIVIDDVDRVR-DETALFHLLNFAVEHRVFLL 124

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           M+A   P    V LPDL SRL+ A VV+I  PDD+ +  V+ K+F DRQ+ +D+   AY+
Sbjct: 125 MSASRRPRPEDVRLPDLLSRLRRAPVVEIGAPDDELMRAVLEKLFRDRQLIVDEPALAYV 184

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             R+ERSL  A  LV  +D  AL+R   ITR+LAAEV++ 
Sbjct: 185 SLRLERSLDAARALVAALDREALARRRPITRALAAEVMER 224


>gi|77464354|ref|YP_353858.1| hypothetical protein RSP_0780 [Rhodobacter sphaeroides 2.4.1]
 gi|332559245|ref|ZP_08413567.1| hypothetical protein RSWS8N_09320 [Rhodobacter sphaeroides WS8N]
 gi|77388772|gb|ABA79957.1| hypothetical protein with ATP/GTP-binding site [Rhodobacter
           sphaeroides 2.4.1]
 gi|332276957|gb|EGJ22272.1| hypothetical protein RSWS8N_09320 [Rhodobacter sphaeroides WS8N]
          Length = 226

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 77/217 (35%), Positives = 121/217 (55%), Gaps = 4/217 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    +SR+D  +  A   A+  +D W  WP   ++LVGP GSGK+ LA+IW+ 
Sbjct: 4   QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63

Query: 87  KSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142
           ++ +      A +   +  +     V +ED + L  +   +  LFH+ N + +   +LL+
Sbjct: 64  QAEARLIPAEALARADLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALLI 123

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TA   P  WG+ L DL SR++AA+V ++  PDD  L  ++VK+F DRQI +   L  ++V
Sbjct: 124 TAAGPPRDWGLGLADLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWLV 183

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            RM+RS   A  LV  +D  +L+    I+R +AAE+L
Sbjct: 184 ARMDRSCEAARALVAALDARSLAERRPISRQMAAELL 220


>gi|254451021|ref|ZP_05064458.1| chromosomal replication initiator, DnaA [Octadecabacter antarcticus
           238]
 gi|198265427|gb|EDY89697.1| chromosomal replication initiator, DnaA [Octadecabacter antarcticus
           238]
          Length = 230

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             Q+ F  P  + +   D  V  A   A  L+ +  +W +  + ++GP+GSGK+ LA ++
Sbjct: 9   ARQMAFDLPTNVRLGAADFFVSDANTLAYVLMQTPQTWSNNNLAIIGPAGSGKTHLARVF 68

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMT 143
           + +S +T  +      D+ L ++   V+LED D L  + +  LFH+ N++ +    LL+T
Sbjct: 69  AAQSGATIINAKDVRADTDLPNSN--VVLEDGDALRTDGEEWLFHVYNALSRAGFFLLLT 126

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +R  P  W + LPDL SRL   T V I  PDD  L  V++K FADRQ+       A++++
Sbjct: 127 SRLPPARWDIALPDLASRLSTITSVTIDDPDDPLLTAVLLKHFADRQLAPTPNAVAFLMK 186

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + RS     ++VD +D  AL++   +TR     VL      +
Sbjct: 187 HLPRSFNAVRRIVDTLDREALAQSKPLTRPFVRAVLDSMPHDE 229


>gi|254440942|ref|ZP_05054435.1| chromosomal replication initiator protein DnaA [Octadecabacter
           antarcticus 307]
 gi|198251020|gb|EDY75335.1| chromosomal replication initiator protein DnaA [Octadecabacter
           antarcticus 307]
          Length = 223

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 114/219 (52%), Gaps = 3/219 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL F  P  + +   D  V  A   A  +I +  +WP   + L+GP+GSGK+ LA ++
Sbjct: 2   ARQLAFDLPTNVRLGAVDFFVSDANALAYAMIQTSQTWPGNKLALIGPAGSGKTHLARVF 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMT 143
           S +S +   +      D+ L      V+LED D L    +  LFH  N++ +    LL+T
Sbjct: 62  SAQSGAMIINAKDIRADTGLPSGN--VVLEDGDALPPEGEEWLFHAYNALARDGFMLLLT 119

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +R     W + LPDL SRL A T +KI  PDD  L  V++K FADRQ+    +  A++++
Sbjct: 120 SRLPAARWDIALPDLASRLSAITSIKIENPDDPLLTAVLLKHFADRQLAPTPEAVAFLIK 179

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           R+ RSL    ++VD +D  AL++   +TR     VL   
Sbjct: 180 RLPRSLDAVRRIVDTLDRKALAQSKPLTRPFVRAVLDSM 218


>gi|89070130|ref|ZP_01157459.1| hypothetical protein OG2516_02718 [Oceanicola granulosus HTCC2516]
 gi|89044247|gb|EAR50393.1| hypothetical protein OG2516_02718 [Oceanicola granulosus HTCC2516]
          Length = 223

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/216 (37%), Positives = 114/216 (52%), Gaps = 2/216 (0%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL F +P  +    D   V  A   A  ++     WP   ++L GP GSGK+ LA +++
Sbjct: 3   RQLSFEWPHEVTFGEDSYYVSEANGTAYAMVTRPGDWPEGKLVLAGPQGSGKTHLARLFA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTA 144
            ++ +      A +    L +T   V+LED D L    +  +FH+ NS+     +LL TA
Sbjct: 63  ARTGALILDAPALAGTEPLPETGD-VVLEDADRLPRQAEEWVFHLHNSLAAAGGALLFTA 121

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P  W V LPDL SRL+AATVVKI  PDD  L  V+ K+  DRQ+     L  ++V R
Sbjct: 122 AAPPTRWAVALPDLVSRLQAATVVKIGDPDDALLAAVLRKILRDRQLAYADGLIPWLVPR 181

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           M RS   A + +D ++  AL RG  +T +LA EVL+
Sbjct: 182 MTRSFAAARRTIDVLEAAALGRGKRLTINLAREVLQ 217


>gi|119384046|ref|YP_915102.1| hypothetical protein Pden_1301 [Paracoccus denitrificans PD1222]
 gi|119373813|gb|ABL69406.1| conserved hypothetical protein [Paracoccus denitrificans PD1222]
          Length = 229

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 119/227 (52%), Gaps = 5/227 (2%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL          SRDD L+ +A   A+ ++D+   WP   ++L+G  GSGKS L   W
Sbjct: 2   ARQLTLDLTMPPASSRDDFLITAANRDALAMLDAPGCWPQGRLLLIGGPGSGKSHLVGFW 61

Query: 85  SDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSS 139
           + +  +        + + +  L+     +++ED   +  N   +  LFH+ N      + 
Sbjct: 62  AAEHGAQICHGWTLAPEGVDELVQPGAALVVEDAHEIGGNPTAEQGLFHLWNLAGARGAL 121

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LL+TAR+ P  WGV LPDL SRL+ A    +  PDD  L  V+VK+FADRQI +  ++  
Sbjct: 122 LLITARSAPRDWGVALPDLRSRLETAAQAILGPPDDAMLTAVLVKLFADRQIQVAPEVVD 181

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           ++V RMER L  A +LV  +D  +L+    ITR LAAE+L +    D
Sbjct: 182 WLVLRMERDLDMARRLVAAIDRESLADRRAITRRLAAELLDKLAPVD 228


>gi|83593498|ref|YP_427250.1| regulatory inactivation of DnaA Hda protein [Rhodospirillum rubrum
           ATCC 11170]
 gi|83576412|gb|ABC22963.1| regulatory inactivation of DnaA Hda protein [Rhodospirillum rubrum
           ATCC 11170]
          Length = 228

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 2/222 (0%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P    + R+  LV +    AV L+++WP WP+    + GP+G+GK+ LA +++ 
Sbjct: 6   QLPLDLPWRPALGREHFLVAACNASAVALVEAWPHWPAPAACIHGPTGAGKTHLAQVFAT 65

Query: 87  KSRSTRFSN--IAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
           ++ +       I  +    L +  +  ++ED D     +  LFH++N+  Q   SLL+TA
Sbjct: 66  RAAAVVLDPAVILGTDPLTLFEGGRAAVIEDADRAGLPEATLFHLLNAARQRGGSLLLTA 125

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
            + P  WGV L DL SRL A     +  PDD+ +  V++K+F+DR + +      Y++ R
Sbjct: 126 LSPPARWGVHLADLRSRLAALPAEGLCEPDDELMAAVLLKLFSDRGLDVAPGAIGYLLPR 185

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           MERS   A  LV   D LAL  G  +T  L  ++L    + D
Sbjct: 186 MERSFAAARDLVVHADALALREGRAVTVPLLRQLLATPDRAD 227


>gi|83949532|ref|ZP_00958265.1| hypothetical protein ISM_00520 [Roseovarius nubinhibens ISM]
 gi|83837431|gb|EAP76727.1| hypothetical protein ISM_00520 [Roseovarius nubinhibens ISM]
          Length = 224

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL F  P    + RDD  V ++   AV +I++W SWP+R ++L GPSG+GK+ LA++W
Sbjct: 2   SQQLSFDLPAVPAMGRDDFFVSASNAAAVAMIETWQSWPARKLMLRGPSGAGKTHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLL 141
           +  S +   +    +   I      PV +ED+  +      +  LFH+ N +    +SLL
Sbjct: 62  ASLSGARIIAASDLAEADIPTLASGPVAVEDLWQITGERAQERALFHLHNLVLAEGNSLL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +T+        + LPDL SR++    V+I  PDD  L  V++K+FADRQ+    +   YI
Sbjct: 122 ITSSDDSALSDIHLPDLASRMEGTPGVRIEPPDDALLAAVLMKLFADRQLRPTPETLPYI 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           V RM R+   A  LV+ +D LAL  G  I R LAA  L   Q
Sbjct: 182 VPRMPRAFAAARNLVETLDQLALDTGKPINRRLAATALDNLQ 223


>gi|46202132|ref|ZP_00208394.1| COG0593: ATPase involved in DNA replication initiation
           [Magnetospirillum magnetotacticum MS-1]
          Length = 231

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 2/222 (0%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL  +F     ++ +D LV     +A   + +   WP    IL GP+GSGK+ LA+++
Sbjct: 3   EAQLPLAFGHVPSLAAEDFLVAPCNAEAHAWVGAPQRWPGPASILCGPAGSGKTHLAHLF 62

Query: 85  SDKSRSTRFSNIAKSLDS--ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
           +             + DS   L+++   +++ED D    ++  LFH+IN   +    LL+
Sbjct: 63  ARDGGGILVPAAQVTEDSSRPLLESVPVLVVEDCDRASLDEVALFHLINQSRELGRFLLL 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TAR+ P  W V LPDL SRL A  V  I  PDD  L  ++VK+F DRQ+ I + +  ++V
Sbjct: 123 TARSAPAHWAVRLPDLRSRLLAMPVASILAPDDALLAALLVKLFDDRQLRIGEDVVHFLV 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            RMERS   A  LVD++D  A +    +T  LA  +L+    
Sbjct: 183 GRMERSFAAAASLVDRLDRAAWAGRRAVTVPLARRILEGEDH 224


>gi|294676368|ref|YP_003576983.1| DnaA-like protein Hda [Rhodobacter capsulatus SB 1003]
 gi|294475188|gb|ADE84576.1| DnaA-like protein Hda [Rhodobacter capsulatus SB 1003]
          Length = 225

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL    P  +   R+D  V  A   A+ L+D+  +W    ++L+GP G+GKS LA IW+
Sbjct: 3   RQLPLPLPVRVAEGREDFFVAPANALALSLLDAPETWAQGRMLLLGPEGAGKSHLAAIWA 62

Query: 86  DKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLL 141
            +  +          +++  +     V++ED   L     ++  LFH++N         L
Sbjct: 63  SERGAVIRPAADLRPETVADLAATGAVVIEDAQHLAGRAASEQALFHLLNLTAAEGGRCL 122

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +TA T P  WGV LPDL SRL A   V+I+ PD+  L  V+VK+FADRQ+ + + L  ++
Sbjct: 123 ITAPTPPRDWGVALPDLKSRLDATQSVRIAPPDEALLAAVLVKLFADRQLTVPQSLIDWL 182

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           V RMER+L  A  +V+ +D  AL+ G  ITR++AAEVL   Q 
Sbjct: 183 VLRMERALGTARAVVEALDARALAEGRAITRAMAAEVLDRLQG 225


>gi|310815333|ref|YP_003963297.1| DnaA-like protein [Ketogulonicigenium vulgare Y25]
 gi|308754068|gb|ADO41997.1| DnaA-like protein [Ketogulonicigenium vulgare Y25]
          Length = 223

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 2/218 (0%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +QL F  P    ++  D +V  A E A  ++   P WP   + L+G  G+GK+ LA +W
Sbjct: 2   AQQLSFDLPIRPSLAAGDYVVSEANEAAYVMLCEEP-WPINKLALIGAPGAGKTHLARVW 60

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMT 143
             +     +          L      +++EDI+ L    +  +FH+ N +      LL+T
Sbjct: 61  QAQEGGHVWQAGGLDPQGGLPPDGANLVIEDIEHLPRRAEEYVFHVHNHLMNTGGHLLVT 120

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +   P  W + LPDL SR++A  VV I  PD+  +  V+ K+FADRQ+     +  Y+V 
Sbjct: 121 SDRGPGDWAIRLPDLASRMQAMAVVPIGDPDEWLMTAVLAKLFADRQLVPTPDVLPYLVS 180

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           R+ RSL  A ++V +MD  AL++   + R +A +VL  
Sbjct: 181 RLPRSLAVAAEVVAQMDAAALAQRRPLNRPMARQVLDN 218


>gi|89053548|ref|YP_508999.1| chromosomal replication initiator, DnaA [Jannaschia sp. CCS1]
 gi|88863097|gb|ABD53974.1| Chromosomal replication initiator DnaA [Jannaschia sp. CCS1]
          Length = 233

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 3/211 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL F  P    + RDD  V +A   AV  ID+W  WP+  ++L GP  SGK+ LA++W
Sbjct: 2   SRQLTFDLPLRPAMGRDDFFVSAANAGAVAQIDAWEGWPTAKLVLCGPPASGKTHLAHVW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141
           +  + +              + T   +++ED + +  +   +  +FHI N++    + LL
Sbjct: 62  AATTGAQIVQATDIVSQIERLSTAPALVIEDAEDISEDALAEEGMFHIHNALSHRGAPLL 121

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +TAR  P  WG  LPDL SR+  A + ++  PDD  L  V++K   DR++ +  K+  + 
Sbjct: 122 ITARLPPSRWGTQLPDLASRMAQAGLARLEAPDDALLMAVMMKRAFDRKLPLSPKILTFA 181

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
             R+ERS   A+  + ++D LALS     + 
Sbjct: 182 APRLERSFAAADAFIARVDALALSEKRKPSL 212


>gi|296446895|ref|ZP_06888831.1| Chromosomal replication initiator DnaA [Methylosinus trichosporium
           OB3b]
 gi|296255570|gb|EFH02661.1| Chromosomal replication initiator DnaA [Methylosinus trichosporium
           OB3b]
          Length = 232

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 113/222 (50%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           + +  QL            +  LV      A  +I  WP WP   ++L+GP+G+GKS L 
Sbjct: 9   RRRAGQLPLDLAGAPRFEAEAFLVSPCNRAAFEMISRWPDWPDPALLLLGPAGAGKSHLC 68

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
            I++ +S +             L  +     + D      ++T LFH++N + +  +SLL
Sbjct: 69  AIFAQRSDALFVDPSDLMTPQRLAASPPRAAIVDGLDAVEDETALFHLMNFLRESGASLL 128

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +  R  P    V LPDL SRL+ A VV+I  PDDD +  V+ K+  DRQ+ +D  L  Y+
Sbjct: 129 LCGRRPPSGETVALPDLLSRLRRAPVVEIGAPDDDLIRAVLEKLLRDRQLLVDPGLVDYL 188

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             R+ERSL  A   V  +D  AL+RG  +TR+LA E+L+  +
Sbjct: 189 ALRLERSLDAARAFVRLLDEEALARGRRVTRALAGELLEALR 230


>gi|298291115|ref|YP_003693054.1| chromosomal replication initiator, DnaA [Starkeya novella DSM 506]
 gi|296927626|gb|ADH88435.1| chromosomal replication initiator, DnaA [Starkeya novella DSM 506]
          Length = 241

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/219 (37%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL    P     +RDD L   A E A+ LID+WP WPSR+V LVGP GSGKS LA I+
Sbjct: 3   ARQLPLDLPHADSRTRDDFLPGPANEGALALIDAWPDWPSRLVALVGPEGSGKSHLAAIF 62

Query: 85  SDKSRSTRFSNIAKSLDSILIDT-RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
           + ++ +      A    ++        +++ED+      +  LFH++N   +  + +L+T
Sbjct: 63  AAETGAQVVPAAALDAAAVPALLASGALVVEDLGEGPVPEAALFHLMNLAGEQRAHVLVT 122

Query: 144 ARTFPVSWGVC--LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           AR  P +        DL SRL+A  VV +  PD++ L  V VK+FADRQI  D+ L  Y+
Sbjct: 123 ARRAPAALAEAIATRDLASRLRAMPVVSLGAPDEELLAAVAVKLFADRQIVPDEALLNYL 182

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + R+ERS+     +V ++D  AL+R   +TR+LA+E+L+
Sbjct: 183 LPRVERSIAGLRDIVGELDREALARKRPLTRALASELLR 221


>gi|163792847|ref|ZP_02186823.1| hypothetical protein BAL199_23699 [alpha proteobacterium BAL199]
 gi|159181493|gb|EDP66005.1| hypothetical protein BAL199_23699 [alpha proteobacterium BAL199]
          Length = 229

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 5/223 (2%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN 82
             QL         + R D LV +    A   ID WP WP+ +  + +VGP+  GK+ L  
Sbjct: 3   PSQLILDLGYRRALGRSDYLVTACNADAAAWIDRWPDWPAPLRGLAIVGPAECGKTHLGA 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           +W   S +   +    ++D +           ++D+  +      L H+ N++ +   S+
Sbjct: 63  VWRRASGAVAVNAADLTVDGLPDALGDATHAAVDDLTGIRAPQ-ALLHLYNTVAERGGSV 121

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+ +RT P      LPDL SRL    +  +  PD+  L  V+ K FADRQ+ + + + AY
Sbjct: 122 LILSRTAPARCDFGLPDLASRLATLPIAMVGPPDEALLAGVLGKHFADRQVAVREDVVAY 181

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +V RMERS   A +LVD++D LAL+ G  + R+LA   L + +
Sbjct: 182 LVARMERSFSAAYRLVDRLDRLALAEGRKVDRALAKRALADDE 224


>gi|90419524|ref|ZP_01227434.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336461|gb|EAS50202.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 230

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 82/217 (37%), Positives = 121/217 (55%), Gaps = 2/217 (0%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             Q+    P    ++R+DL++  +   AV  IDSWP W   V+++VGP GSGK+ LAN W
Sbjct: 2   PTQIPLELPHAASLAREDLIMSPSNRLAVEAIDSWPQWRHSVLLIVGPPGSGKTHLANAW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
           S+++ +T     A        D R  V+++D D    ++ +LF ++N+      SLL+T+
Sbjct: 62  SERAGATVARPDATEASLAADDFR--VVVDDADRTALSERELFGLVNAARLGGGSLLLTS 119

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R  P +  V   DL SRL AAT+ ++  PDD  L  V++K+FADRQI +  +   Y+VQR
Sbjct: 120 RVMPQAMNVATADLRSRLAAATIAELGAPDDPLLTGVLIKLFADRQIAVSPRAVNYLVQR 179

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           MERSL  A  LV ++D  AL+    I   L   VL  
Sbjct: 180 MERSLDAAGFLVAEIDREALATRERIGTRLLKRVLDR 216


>gi|159043293|ref|YP_001532087.1| chromosomal replication initiator [Dinoroseobacter shibae DFL 12]
 gi|157911053|gb|ABV92486.1| chromosomal replication initiator [Dinoroseobacter shibae DFL 12]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 5/227 (2%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +  +QL F  P    + R D +      +A+  ID+WP WP+  ++L GP  SGK+ LA 
Sbjct: 2   SAPQQLAFPLPAWPALGRADFIAAPCNAEALARIDAWPDWPAPRLVLCGPPASGKTHLAQ 61

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINS-IHQYDS 138
           IW+ K+R+        +LD +     + V +ED D L         LFH+ N    + + 
Sbjct: 62  IWAAKARAEILPARLLTLDMVAELPAQ-VAIEDADQLFGMGEAQEALFHLHNRLAAEAEG 120

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           +LL+T    P  W + LPDL SRL+A  + ++S PDD  L  ++ K+F DRQI     L 
Sbjct: 121 ALLITGAAPPARWSIALPDLASRLQAMPLAQLSAPDDALLGALLAKLFEDRQIAPPPNLI 180

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +++ RMERS   A  +V ++D+ ALS    I  +LAAE+L    + 
Sbjct: 181 PFLLIRMERSFAAARAVVAELDHRALSERRAIGTALAAEILTSLDRA 227


>gi|294084193|ref|YP_003550951.1| hypothetical protein SAR116_0624 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663766|gb|ADE38867.1| hypothetical protein SAR116_0624 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 228

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR--VVILVGPSGSGKSCLANI 83
           +Q+           RD+  + ++ + A   ID WP WP +   + +VG  GSGKS LA +
Sbjct: 2   QQIPMDLSFRSAQDRDNFFISASNQLAADWIDRWPDWPGQMQALNIVGEPGSGKSHLAAV 61

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           W +++ S   S     +   L++        +L+++   + ++  LFH +N+I     SL
Sbjct: 62  WQEQTGSVSLSKADADMVHRLMEKNAEAPCFILDNLSAENSDEEALFHFLNAIKSVQGSL 121

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+ +          L DL SRLKA  V +I LPDD  L  ++ K FA+RQ+     +  Y
Sbjct: 122 LILSSMPIALMNWKLADLMSRLKAINVAQIELPDDMLLFALLEKYFAERQLVAPHNMLHY 181

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           IV RM+RS     ++   +D  AL+    ++ +LA +VL +  + D
Sbjct: 182 IVSRMDRSFSAVHQIGAALDREALASKKSLSVNLARDVLHKQLEID 227


>gi|260575896|ref|ZP_05843891.1| conserved hypothetical protein [Rhodobacter sp. SW2]
 gi|259021822|gb|EEW25123.1| conserved hypothetical protein [Rhodobacter sp. SW2]
          Length = 230

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 3/217 (1%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
           + F  P    + R D  V  A   A+  +D W  WP   ++LVGP+G+GK+ LA+IW+  
Sbjct: 1   MAFDLPTSEALGRADFCVSPANALALAALDGWRDWPGGKMLLVGPAGAGKTHLAHIWASD 60

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTA 144
           + +   +  A +   +    +  + +ED + +  N   +  LFH+ N   +    LL+TA
Sbjct: 61  AGAGLIAGSALAGADLPALAQTALCVEDAESVAGNPAAEAALFHLHNLAAERGMPLLLTA 120

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
            T P  WG+ LPDL SR++A  + ++  PDD  L  ++VK+FADRQI +   L  Y+V R
Sbjct: 121 ATPPRDWGLGLPDLASRMQATPLTRLDAPDDALLSALLVKLFADRQISVPPNLIPYLVSR 180

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           M+RS   A  LV  +D  AL+ G  ITR LAA+V+  
Sbjct: 181 MDRSFAAARALVAALDARALALGRPITRQLAADVIDR 217


>gi|114704852|ref|ZP_01437760.1| hypothetical protein FP2506_07946 [Fulvimarina pelagi HTCC2506]
 gi|114539637|gb|EAU42757.1| hypothetical protein FP2506_07946 [Fulvimarina pelagi HTCC2506]
          Length = 223

 Score =  225 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 107/221 (48%), Gaps = 4/221 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL    P    + RDDL+V  +   A   ID+WP W   V+++VGP GSGK+ LA IW
Sbjct: 2   ARQLPLELPSIEQLGRDDLIVSHSNTLAAEAIDAWPDWQHNVLLIVGPEGSGKTHLARIW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
           ++ + +T             +     ++++DID  D  D+ LF  IN+       +L T+
Sbjct: 62  AEAADATILGLGEIG----PLSGGFRLVIDDIDRPDVADSDLFAPINAARLGQGWVLATS 117

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R  P      LPDL SRL AA    +  PDD   E ++ K F+D Q+ +D     Y+  R
Sbjct: 118 RVSPKMMAGRLPDLVSRLSAAARADLDPPDDVLFEGILAKRFSDHQLVVDPPTLTYLATR 177

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +ER+   A  +V+ ++  AL+    IT+     VL+     
Sbjct: 178 IERTGSAARAIVEDINRQALAEKSRITKPFVRRVLERHSGA 218


>gi|217977144|ref|YP_002361291.1| chromosomal replication initiator DnaA [Methylocella silvestris
           BL2]
 gi|217502520|gb|ACK49929.1| chromosomal replication initiator DnaA [Methylocella silvestris
           BL2]
          Length = 240

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL        G + +D  +  + E A ++I+ WP W +  +IL+GP+GSGKS L  IW
Sbjct: 3   ARQLPLDLALEPGFAAEDFFISGSNESAYQMIERWPDWSNSALILIGPAGSGKSHLGAIW 62

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
           + K+ +T  +    +            L +ED++ +     QLFH++N        L+MT
Sbjct: 63  AAKAGATTIAAATLAGREPAALVAAGALLIEDLEAIGPGQAQLFHLVNLALPRRLPLVMT 122

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           AR  P      LPDL SRL+ A  V I  PDD  +  V+VK+  DRQ+ +D +L  Y   
Sbjct: 123 ARRPPGPDNFDLPDLLSRLRLAPSVSIGAPDDALMRMVLVKLLMDRQLVVDVRLVDYAAL 182

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           R++ SL  A   V+K+D  AL+R   +TR +AAEVL   
Sbjct: 183 RLDYSLEAARSFVEKLDREALARKSRVTRQIAAEVLSAM 221


>gi|83311942|ref|YP_422206.1| DNA replication initiation ATPase [Magnetospirillum magneticum
           AMB-1]
 gi|82946783|dbj|BAE51647.1| ATPase involved in DNA replication initiation [Magnetospirillum
           magneticum AMB-1]
          Length = 231

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 2/222 (0%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL  +F     ++ DD LV     +A   + +   WP    +L GP+ SGK+ LA+++
Sbjct: 3   EAQLPLAFGHVPSLAADDFLVAPCNAEAHAWVGAPGRWPGPASVLCGPAQSGKTHLAHLF 62

Query: 85  SDKSRSTRFSNIAKSLDS--ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
           +        S    +  S   L+++   +++ED D    ++  LFH+IN   +    LL+
Sbjct: 63  ARDGGGRLVSAAEVTEGSSRPLLESVPVLVVEDCDRGPLDEVGLFHLINQGRELGRLLLL 122

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TAR  P +W V LPDL SRL A  V  I  PDD  L  ++VK+F DRQ+ I + +  +++
Sbjct: 123 TARLPPATWAVRLPDLRSRLLAMPVAAIGAPDDALLAALLVKLFDDRQLRIGEDVVHFLI 182

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            RMERS     ++V+++DN AL+    +T  LA  +L+    
Sbjct: 183 GRMERSFAACARMVERLDNAALASRRAVTVPLARRILEGEDH 224


>gi|221640240|ref|YP_002526502.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           KD131]
 gi|221161021|gb|ACM02001.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides
           KD131]
          Length = 231

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 4/194 (2%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F  P    +SR+D  +  A   A+  +D W  WP   ++LVGP GSGK+ LA+IW+ 
Sbjct: 4   QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63

Query: 87  KSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142
           ++ +      A +   +  +     V +ED + L  +   +  LFH+ N + +   +LL+
Sbjct: 64  QAEARLIPAEALARADLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALLI 123

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TA   P  WG+ L DL SR++AA+V ++  PDD  L  ++VK+F DRQI +   L  ++V
Sbjct: 124 TAAGPPRDWGLGLADLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWLV 183

Query: 203 QRMERSLVFAEKLV 216
            RM+RS   A  LV
Sbjct: 184 ARMDRSCEAARALV 197


>gi|148284485|ref|YP_001248575.1| hypothetical protein OTBS_0856 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739924|emb|CAM79922.1| conserved hypothetical protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 216

 Score =  221 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 9/220 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS-WP----SRVVILVGPSGSGKSCL 80
            Q   +FP       +D +V S+   A +LI +WPS W     SR +++ GP+ SGK+ L
Sbjct: 1   MQHTINFPNNSKFLEEDYIVASSNFDAYQLIKNWPSMWGITPYSRSLLVCGPASSGKTYL 60

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           ANIW   + +   S+           T+   ++EDID   ++D +L HI N +H+ +  L
Sbjct: 61  ANIWQRYANAVFMSSSDNI--DQFYQTKPSFIIEDIDKTHWSDKKLLHIFNILHENNKFL 118

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           ++T    P      LPDL SRL A   +K+  PDD+ ++ V++K F++R + +  ++  Y
Sbjct: 119 MLTCSMHPT--NFILPDLTSRLSAVLTIKLHRPDDEMMKIVLMKAFSERSLKVSNEIINY 176

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +  R+ R      + V  +D  +L     IT  L  E+LK
Sbjct: 177 LSSRLTREFSIIHETVKLIDKYSLEHKRNITIPLLKELLK 216


>gi|239948341|ref|ZP_04700094.1| chromosomal replication initiator protein DnaA [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922617|gb|EER22641.1| chromosomal replication initiator protein DnaA [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 222

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 112/224 (50%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSNKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I       +++     ++EDI+  ++ + +L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FSEEILEKYNAFIIEDIE--NWQEPELLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+     S    LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I +++  +
Sbjct: 118 LLTSSD--KSRNFTLPDLSSRIKSVLSIVLNSPDDELIKILIFKHFSISSVTISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      ++++ +++ AL     IT SL  EVL     
Sbjct: 176 LLVNLPREYSKIIEILENINHFALISKRKITTSLVKEVLNNYNH 219


>gi|197105152|ref|YP_002130529.1| DnaA-related protein [Phenylobacterium zucineum HLK1]
 gi|196478572|gb|ACG78100.1| DnaA-related protein [Phenylobacterium zucineum HLK1]
          Length = 273

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           + +    QL     R    SRD+  V  +  QAV L+D+WP+W  R + LVGP GSGK+ 
Sbjct: 47  RTRRMARQLRLRLGRPAAYSRDEFAVGPSNAQAVALLDAWPAWHGRALALVGPEGSGKTH 106

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS 139
           LA  W+  + +         L        +P LLED+D        LFH+IN   +    
Sbjct: 107 LARAWAQAAGAVVLDREDPDLRQ---ADGRPALLEDVDQ-GVPGEALFHLINLAAREGGG 162

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LL+TART P +W   LPDL SRL A  V +I  PDD  LE V+ K F DR I   +++  
Sbjct: 163 LLLTARTRPAAWPAALPDLRSRLNALAVAEIEPPDDAVLEGVLRKFFRDRNIRPPEEVYP 222

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           Y+++RM RS+  A ++V K+D         +TR LA ++L+   Q
Sbjct: 223 YLLRRMGRSIPDAREIVRKLDEAGDGELKPVTRVLARQILEGDSQ 267


>gi|67458792|ref|YP_246416.1| hypothetical protein RF_0400 [Rickettsia felis URRWXCal2]
 gi|67004325|gb|AAY61251.1| DnaA-like protein [Rickettsia felis URRWXCal2]
          Length = 222

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ EQA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFITSNKYHPDEFIVSSSNEQAYNIIKNWQCNFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  +++     ++E+I+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEILEKYNAFIIENIE--NWQEPALLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+     S    LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I  ++  +
Sbjct: 118 LLTSSN--KSRNFTLPDLSSRIKSVLSIALNSPDDELIKILIFKHFSISSVTISGQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      ++++ ++  AL     IT SL  EVL +   
Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITTSLVKEVLNKYNH 219


>gi|238651086|ref|YP_002916944.1| hypothetical protein RPR_07330 [Rickettsia peacockii str. Rustic]
 gi|238625184|gb|ACR47890.1| hypothetical protein RPR_07330 [Rickettsia peacockii str. Rustic]
          Length = 222

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  + +     ++EDI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TA     S    LPDL SR+K+   + ++ PDD+ ++ +I K FA   + I +++  +
Sbjct: 118 LLTASD--KSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      +++D ++  AL     IT SL  EVL +   
Sbjct: 176 LLVNLPREYSKIIEILDNINYFALIAKRKITTSLVKEVLNKYNH 219


>gi|34581398|ref|ZP_00142878.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262783|gb|EAA26287.1| unknown [Rickettsia sibirica 246]
          Length = 222

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+  QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSSKYHPDEFIVSSSNNQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  + +     ++EDI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TA     S    LPDL SR+K+   + ++ PDD+ ++ +I K FA   + I +++  +
Sbjct: 118 LLTASD--KSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      +++D ++  AL     IT SL  EVL +   
Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219


>gi|15892902|ref|NP_360616.1| hypothetical protein RC0979 [Rickettsia conorii str. Malish 7]
 gi|229586980|ref|YP_002845481.1| hypothetical protein RAF_ORF0880 [Rickettsia africae ESF-5]
 gi|15620092|gb|AAL03517.1| unknown [Rickettsia conorii str. Malish 7]
 gi|228022030|gb|ACP53738.1| DnaA-like protein [Rickettsia africae ESF-5]
          Length = 222

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  + +     ++EDI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TA     S    LPDL SR+K+   + ++ PDD+ ++ +I K FA   + I +++  +
Sbjct: 118 LLTASD--KSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      +++D ++  AL     IT SL  EVL +   
Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219


>gi|189184534|ref|YP_001938319.1| hypothetical protein OTT_1627 [Orientia tsutsugamushi str. Ikeda]
 gi|189181305|dbj|BAG41085.1| DnaA homologue Had protein [Orientia tsutsugamushi str. Ikeda]
          Length = 216

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 9/220 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS-W---PSRV-VILVGPSGSGKSCL 80
            Q   +FP       +D +V S+   A +LI +WPS W   P    +++ GP  SGK+ L
Sbjct: 1   MQHTINFPNNSKYLEEDYIVTSSNFDAYQLIKNWPSMWGITPYSKSLLVCGPPSSGKTYL 60

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           ANIW   + +   S+           T+   ++EDID   + D +L HI N +H+ +  L
Sbjct: 61  ANIWQRYANAVFMSSSDNI--DQFYQTKPSFIIEDIDKTHWTDKKLLHIFNILHENNKFL 118

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           ++T    P      LPDL SRL A   +K+  PDD+ ++ V++K F++R + +  ++  Y
Sbjct: 119 MLTCSMHPT--NFILPDLASRLSAVLTIKLHRPDDEMMKIVLMKAFSERSLKVSTEIINY 176

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +  R+ R        V  +D  +L     IT  L  E+LK
Sbjct: 177 LSSRLTREFSIIHDTVKLIDKYSLEHKRNITIPLLKELLK 216


>gi|157826035|ref|YP_001493755.1| hypothetical protein A1C_04965 [Rickettsia akari str. Hartford]
 gi|157799993|gb|ABV75247.1| hypothetical protein A1C_04965 [Rickettsia akari str. Hartford]
          Length = 222

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS----WPSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ EQA  ++ +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSNKYHHDEFIVSSSNEQAYNIVKNWQYSFGVNPYKFTVLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +     ++ +++     ++EDI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDSF--FNAEILEKYNACIIEDIE--NWQEPALLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+     +    LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I  ++  +
Sbjct: 118 LLTSSD--KTRNFTLPDLSSRIKSVLSIALNSPDDELIKILIFKHFSISSVTISGQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      ++++ +++ AL     IT SL  EVL     
Sbjct: 176 LLVNLPREYSKIIEILENINHSALISKRKITTSLVKEVLNNYHH 219


>gi|157964779|ref|YP_001499603.1| hypothetical protein RMA_1009 [Rickettsia massiliae MTU5]
 gi|157844555|gb|ABV85056.1| DnaA-like protein [Rickettsia massiliae MTU5]
          Length = 227

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 7   QQYIFRFTTSNKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 66

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  +++     ++EDI+  ++ +  L HI N I++    L
Sbjct: 67  TKIWQNLSNAYIIKDIF--FNEEILEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 122

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TA     S    LPDL SR+K+   + ++ PDD+ ++ +I K FA   + I  ++  +
Sbjct: 123 LLTASD--KSRNFTLPDLSSRIKSVLSMLLNSPDDELIKILIFKHFAISSVTISGQIIDF 180

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      +++D ++  AL     IT SL  EVL +   
Sbjct: 181 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 224


>gi|114569799|ref|YP_756479.1| regulatory inactivation of DnaA Hda protein [Maricaulis maris
           MCS10]
 gi|114340261|gb|ABI65541.1| regulatory inactivation of DnaA Hda protein [Maricaulis maris
           MCS10]
          Length = 230

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 2/215 (0%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           Q+    P     S    +   +   A  ++     WP  V+ L+GP G+GKS LA IW+ 
Sbjct: 8   QMALDLPARQDFSAAAFIAGPSNAAARDVLGRPDDWPRNVMALIGPEGAGKSHLAAIWAG 67

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-LLMTAR 145
           + ++              ++    +++ED+D    +D  LFH+ N   +     LL+TAR
Sbjct: 68  RQQALVLPASTLGDRLAALEPDCAMVVEDVDQ-GVDDDALFHLFNRAAEGAIPALLLTAR 126

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
           T P  W V +PDL SRL+A   V +   DD  L +V+ K  ADR   +   +  Y++ RM
Sbjct: 127 TRPAHWTVSVPDLVSRLRALVHVDLHEADDVLLTRVLEKQLADRGAPVRPGVIDYLLPRM 186

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ERS+     L ++MD LAL +   ITR++A E+L 
Sbjct: 187 ERSVAAVRILAERMDKLALVKKTPITRAIAREILD 221


>gi|157828827|ref|YP_001495069.1| hypothetical protein A1G_05380 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933553|ref|YP_001650342.1| hypothetical protein RrIowa_1158 [Rickettsia rickettsii str. Iowa]
 gi|157801308|gb|ABV76561.1| hypothetical protein A1G_05380 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908640|gb|ABY72936.1| DnaA-related protein [Rickettsia rickettsii str. Iowa]
          Length = 222

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGINPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  + +     +++DI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIDDIE--NWQEPTLLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+TA     S    LPDL SR+K+   + ++ PDD+ ++ +I K FA   + I +++  +
Sbjct: 118 LLTASD--KSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAIASVTISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      +++D ++  AL     IT SL  EVL +   
Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219


>gi|255261822|ref|ZP_05341164.1| chromosomal replication initiator, DnaA [Thalassiobium sp. R2A62]
 gi|255104157|gb|EET46831.1| chromosomal replication initiator, DnaA [Thalassiobium sp. R2A62]
          Length = 224

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 113/223 (50%), Gaps = 3/223 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            EQL F  P  + +  DD  V SA +   R I   P+WP   + L+GP  SGKS LA ++
Sbjct: 2   AEQLSFDLPERIAMGADDFYVSSANDVPYRAITGSPNWPDGKLALIGPKSSGKSHLARMF 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DTQLFHIINSIHQYDSSLLM 142
           +  + +   +       + L D    + +ED++ L        LFH+ N +      LL+
Sbjct: 62  AHDTGALILAARDLEAATNLPDA-AHIAIEDVEHLGNPAAQEYLFHLHNHLKNTGGRLLL 120

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T+      W + LPDL SR++A T V I  PDD  L  VI K+FADRQ+     + AY+ 
Sbjct: 121 TSDRRAQDWPITLPDLASRMQATTSVYIEDPDDALLFAVISKLFADRQLSPAPTVTAYLA 180

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            R++RS   A+++V  MD  AL++   + R LA +VL +    
Sbjct: 181 ARIDRSYNAAQQIVAAMDAAALAQARELNRGLAGDVLAQMDAA 223


>gi|83945464|ref|ZP_00957811.1| hypothetical protein OA2633_01079 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851040|gb|EAP88898.1| hypothetical protein OA2633_01079 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 222

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/217 (34%), Positives = 115/217 (52%), Gaps = 2/217 (0%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           K  QL            +   V  A   A+ L++ WP W    ++LVGP+GSGK+ L+++
Sbjct: 2   KPGQLALDLVLEPDYRAEAFAVSEANAAALALVNRWPRWRQGHLLLVGPAGSGKTHLSHM 61

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH-QYDSSLLM 142
           W+ ++R+TR    + S     +     VL+ED D    ++  LFH++N        ++LM
Sbjct: 62  WTARTRATRLDPASLSNGLKTVGRGAAVLVEDCDR-GVDEDALFHLLNRAAGDAGVTVLM 120

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TA   P  W V LPDL SRL A     +  PDD  L +V+ K+F D++  +   +  Y++
Sbjct: 121 TAGKAPAEWPVRLPDLASRLIATETAVLHEPDDALLRQVMEKLFRDKRTPLSPGVLEYLL 180

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            RMERS+ +A +L   +D  AL+R   +TR+LA E L
Sbjct: 181 DRMERSVDYARRLTAWLDREALARKGPVTRTLAREAL 217


>gi|51473811|ref|YP_067568.1| hypothetical protein RT0622 [Rickettsia typhi str. Wilmington]
 gi|51460123|gb|AAU04086.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 221

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS----WPSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+  QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTSNKYHPDEFIVSSSNAQAYNIIKNWQCCFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I   L+  +++     ++EDI+   + +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--LNEEILEKNNTFIIEDIE--SWQEPALLHIFNIINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+     +    LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I +++   
Sbjct: 118 LLTSSD--KNDNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDL 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      ++++ ++  AL     IT SL  EVL   + 
Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLNNYKN 219


>gi|15604478|ref|NP_220996.1| hypothetical protein RP631 [Rickettsia prowazekii str. Madrid E]
 gi|3861172|emb|CAA15072.1| unknown [Rickettsia prowazekii]
 gi|292572260|gb|ADE30175.1| DnaA-like protein [Rickettsia prowazekii Rp22]
          Length = 221

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 112/224 (50%), Gaps = 11/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP----SWPSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+  QA  +I +W     + P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFHFTPSNKYHPDEFIVSSSNAQAYNIIKNWQYCFGANPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  +++     ++EDI+  ++ +  L HI N I++    L
Sbjct: 62  TKIWQNLSNAYLIKDIF--FNEEILEKYNTFIIEDIE--NWQEPTLLHIFNVINEKQKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+     +    LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I +++  +
Sbjct: 118 LLTSSD--KNNNFTLPDLSSRIKSVLSILLNAPDDELIKILIFKHFSISSVTISQQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  + R      ++++ ++  AL     IT SL  EVL   + 
Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLNNYKN 219


>gi|91205351|ref|YP_537706.1| hypothetical protein RBE_0536 [Rickettsia bellii RML369-C]
 gi|157826952|ref|YP_001496016.1| hypothetical protein A1I_03070 [Rickettsia bellii OSU 85-389]
 gi|91068895|gb|ABE04617.1| Chromosomal replication initiator protein DnaA-like protein
           [Rickettsia bellii RML369-C]
 gi|157802256|gb|ABV78979.1| hypothetical protein A1I_03070 [Rickettsia bellii OSU 85-389]
          Length = 220

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 11/219 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS----WPSRVVILV-GPSGSGKSCL 80
            Q  F F        ++ +V  +       + +W +     P ++ +L+ GP+ SGK+ L
Sbjct: 1   MQYIFPFNNSSKYHPEEFIVSESNALVYNALQNWQNSFGVNPYKLTLLIKGPASSGKTYL 60

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    D  ++      ++EDI+  ++ +T L H+ N I++    L
Sbjct: 61  TKIWQNLSNAYIIKDIF--FDDKILANHTAFIIEDIE--NWQETALLHLFNLINEKQKYL 116

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+          LPDL SR+ +   V +  PDD+ ++ +I K FA   + I + +  +
Sbjct: 117 LLTSNN--KGKNFTLPDLSSRINSILNVLLYPPDDELIKILIFKHFATSSVTISQIVIDF 174

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           ++  + R      ++++ ++N AL+    IT  L  E L
Sbjct: 175 LLVNLPREYNRILEILEYINNFALTSKRKITIPLVKEAL 213


>gi|157803499|ref|YP_001492048.1| hypothetical protein A1E_01590 [Rickettsia canadensis str. McKiel]
 gi|157784762|gb|ABV73263.1| hypothetical protein A1E_01590 [Rickettsia canadensis str. McKiel]
          Length = 222

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 11/225 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS----WPSRVVILV-GPSGSGKSCL 80
           +Q  F F        D+ +V S+ +QA  +I +W       P +  +L+ GPS SGK+ L
Sbjct: 2   QQYIFRFTTPNKYHPDEFIVSSSNDQAYNIIQNWQHRFGVNPYKFTLLIKGPSSSGKTYL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             IW + S +    +I    +  +++     ++EDI+  ++ +  L +I N I++    L
Sbjct: 62  TKIWQNLSNAYIIKDIF--FNEEILEQYNAFIIEDIE--NWQEPALLYIFNIINEKRKYL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T+  F  S    LPDL SR+K+   + ++ PDD+ ++ +I K F+   + I +++  +
Sbjct: 118 LLTS--FDKSKNFALPDLSSRIKSVLSIVLNSPDDELIKVLIFKHFSISSVIISRQIIDF 175

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           ++  + R      ++++ ++ +AL+    IT SL  EVL +    
Sbjct: 176 LLVNLPREHSKIIEILENINQIALTSKRKITTSLVKEVLNKYSHT 220


>gi|302383321|ref|YP_003819144.1| DnaA-related protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302193949|gb|ADL01521.1| DnaA-related protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 232

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 6/224 (2%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKS 78
              +   +QL       +       +   +   AV  + +WP+   RV+ L GP+G GKS
Sbjct: 2   TARRPLRDQLRLPLTTDIIGGAATFVRSGSNAYAVDALAAWPNAAGRVMALCGPAGCGKS 61

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138
            LA+ W+++  +   +    +L   L    +PVLL+     D +D  LFH+IN       
Sbjct: 62  HLASAWAERVGAIPLNGAEAALTDPLELEGRPVLLDIAQ--DADDETLFHLINLAQHDGG 119

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           +LLM +R  P  W V +PDL SRL A  VV +  PDD  +  ++   FA+R I     + 
Sbjct: 120 ALLMVSRPSPRRWAVQVPDLRSRLDAVRVVAMEAPDDAVMSAILAARFAERSITPGDGVI 179

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            Y+V R++RS   A  +V ++D+        ITR+LA +VL+ +
Sbjct: 180 DYLVLRIDRSAEAAAGIVARLDDE----HRPITRALARQVLEAS 219


>gi|154247057|ref|YP_001418015.1| chromosomal replication initiator, DnaA [Xanthobacter autotrophicus
           Py2]
 gi|154161142|gb|ABS68358.1| chromosomal replication initiator, DnaA [Xanthobacter autotrophicus
           Py2]
          Length = 244

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 134/223 (60%), Gaps = 1/223 (0%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +  QL    P    + R+D L       A+ LID++P WP+RVV +VGP G+GKS L+ 
Sbjct: 6   GRPRQLPLDLPAYPALRREDFLAAPGNAAALALIDAFPEWPARVVCIVGPEGAGKSHLSA 65

Query: 83  IWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
           I++++S +      A + + +        ++LED+    F++  LFH++N   +  + LL
Sbjct: 66  IFAERSGARTLDARALTREGVPEALASGALVLEDLSAGTFSEAALFHLLNLAREQQAYLL 125

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MTART P S+ +   DL SRL+A  V +I+  DD  L  V+VK+FADRQ+ +D+    Y+
Sbjct: 126 MTARTPPSSFSLATADLASRLRAVPVFEIAPADDALLAAVLVKLFADRQLSVDEATVQYL 185

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + RM+R++  A+++VD +D  AL+    +TR+LAA+VLKE  +
Sbjct: 186 LMRMQRTVAGAKRIVDALDTAALAARRPVTRALAAQVLKELGE 228


>gi|330993500|ref|ZP_08317435.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter
           sp. SXCC-1]
 gi|329759530|gb|EGG76039.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter
           sp. SXCC-1]
          Length = 255

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 112/224 (50%), Gaps = 9/224 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL   F      +  D +  ++   A   +     WP R + L GP+G+GK+ + +IW+ 
Sbjct: 20  QLVLPFAHTPRFAASDFVFSASNAAARSWLLGPTPWPERRLALWGPAGTGKTHMLDIWAR 79

Query: 87  KSRSTRFSNIAKSLDSILIDTRK--------PVLLEDIDLLDFNDTQLFHIINSIHQYDS 138
           +  +      + +   +               + L+  D+   ++  L H++NS  +   
Sbjct: 80  RHEALLLHGGSLTHAHVAALFAARGGRRPPMAMALDGADM-CGDEHALLHLLNSAREQGM 138

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           ++L+ ART P  W V LPDL SRL+A   V +  P D  L  +++++ A+RQI + + + 
Sbjct: 139 AVLLGARTPPARWPVILPDLASRLRATMAVAVGQPGDGLLRVLLLRLLAERQIVVAQPVV 198

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++++R+ R+    +  V ++D+ AL+ G  +TR+LAA VL + 
Sbjct: 199 EWLLRRLPRTARAMQAAVRRLDHAALATGRPVTRALAASVLSDM 242


>gi|84515333|ref|ZP_01002695.1| hypothetical protein SKA53_01706 [Loktanella vestfoldensis SKA53]
 gi|84510616|gb|EAQ07071.1| hypothetical protein SKA53_01706 [Loktanella vestfoldensis SKA53]
          Length = 220

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 3/218 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL F +P  + +  DD  V +A   A  ++     WP   +++ GP+G GKS LA I+
Sbjct: 3   ARQLSFDWPNGVALGPDDFFVSTANATAFGMVTDPARWPLCKLVITGPAGCGKSHLARIF 62

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSSLLMT 143
           +    +   +    + D         +++ED+D L       +FH+ N +H     LL+T
Sbjct: 63  AAGQPTQIIAAADLTADFRPKAA--ALVVEDMDTLPSAAQEAMFHLHNHLHNNGGLLLLT 120

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           AR  P  W + LPDL SR++ + VV+++ PDD  L+ V++K+FADRQ+     LAAY+  
Sbjct: 121 ARQTPRHWPITLPDLASRMQGSAVVQVADPDDALLQAVMMKLFADRQLLPPPDLAAYLAP 180

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           R+ERS   A  +V ++D++AL+ G  I++ LAA +L +
Sbjct: 181 RIERSFAAAAAIVAELDSMALATGHKISQRLAARLLDK 218


>gi|162147795|ref|YP_001602256.1| DNA replication [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542417|ref|YP_002274646.1| Chromosomal replication initiator DnaA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786372|emb|CAP55954.1| putative DNA replication [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530094|gb|ACI50031.1| Chromosomal replication initiator DnaA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 255

 Score =  204 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 119/238 (50%), Gaps = 7/238 (2%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74
            Q    P++   QL   F      +R D +   +   A   +   P+WP   + L G +G
Sbjct: 8   NQDETAPRDSFGQLVLPFAHRTRHARADFVAAPSNGMARAWLLGAPAWPEHRLALWGAAG 67

Query: 75  SGKSCLANIWSDKSRSTRFSNIAKSLDSI------LIDTRKPVLLEDIDLLDFNDTQLFH 128
           +GK+ L +IW+ +  +   +    +  ++        D  + V ++D D ++ +   L H
Sbjct: 68  AGKTHLLDIWAQERGAVLLTGADLTQATLGRLFDDAPDMLRAVAVDDADRVE-DQRALLH 126

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           ++N+  ++  ++++ AR  P  W V LPDL SRL+A   +++  P+D  L  ++++  AD
Sbjct: 127 LLNAAREHRVAVVLAARLSPARWPVVLPDLASRLRATMAIELRQPEDTLLRILLLRHLAD 186

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           RQI + + +  ++++R+ R+     +   ++D+  L+ G  +TR+LA  VL +    D
Sbjct: 187 RQIVVSQPVTEWLLRRLPRTASAIREAAIRLDHAGLAAGRRVTRALALSVLHDMLAHD 244


>gi|315500000|ref|YP_004088803.1| chromosomal replication initiator dnaa [Asticcacaulis excentricus
           CB 48]
 gi|315418012|gb|ADU14652.1| Chromosomal replication initiator DnaA [Asticcacaulis excentricus
           CB 48]
          Length = 221

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 10/220 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             Q           +  + +V  A      L+     W +  ++L GP+GSGK+  ++++
Sbjct: 2   AHQYPLDLSLPAPYAAANFVVSDANRALFDLLRQPADWLNPHLVLTGPAGSGKTHASHVF 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
           ++   +   +  A      + DT    ++++ D   F+   LFH+ N        LL+ +
Sbjct: 62  AETHGAHWLNPGA-----PVPDTATLFVVDEAD--TFDQEVLFHLYNRTASDGR-LLLLS 113

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R  P  W + +PD  SRLKA  V+ +  PDD  L+ V+ K+F  R I     +  Y+ +R
Sbjct: 114 RQHPAQWRIRVPDFESRLKAMRVIDMPEPDDSLLKSVLKKLFEARVITPSDDVLEYLSRR 173

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           MERS+  A+K+V  +   A + G   TRSLA + ++ ++ 
Sbjct: 174 MERSVAHAQKIVTGL--EAYANGRAFTRSLARQFIETSEN 211


>gi|218512961|ref|ZP_03509801.1| hypothetical protein Retl8_04315 [Rhizobium etli 8C-3]
          Length = 166

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/165 (46%), Positives = 101/165 (61%), Gaps = 1/165 (0%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           D +  D  +   EQL   F       RDDLL+   +  AV ++D+WP+WPS VV+L GP 
Sbjct: 3   DVKNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
           GSGKS LA IW + S +          D+ +     PVL ED D L F+D  LFH+INS+
Sbjct: 63  GSGKSHLARIWRELSGAVDIRP-DLGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            ++ +SLLMT+R +P+SW V LPDL SRLKAATVV+I  PD+  L
Sbjct: 122 REHGTSLLMTSRLWPISWPVLLPDLRSRLKAATVVEIGEPDEALL 166


>gi|296115157|ref|ZP_06833798.1| Chromosomal replication initiator DnaA [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978258|gb|EFG84995.1| Chromosomal replication initiator DnaA [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 252

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 106/228 (46%), Gaps = 8/228 (3%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           ++   QL   F      +R D +   +   A   +    +WP R + L G  G GK+ L 
Sbjct: 4   RDTIGQLVLPFAHMQHFTRADFVAARSNAVARAWLLGRTAWPDRRLALWGARGCGKTHLL 63

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRK-------PVLLEDIDLLDFNDTQLFHIINSIH 134
            IW+ +  +   S    +   +              + ++D +    ++  + H++N   
Sbjct: 64  EIWAAEHDAVLLSGADLTCGDVARLFGAGRGSGVVAIAVDDAECCA-DERAVLHLLNGAR 122

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           ++  +L ++ R  P  W V LPDL SRL+A   V++  P+D  L  V++++ A+RQI + 
Sbjct: 123 EHGMALALSGRRPPARWPVTLPDLASRLRATMAVEVRQPEDMLLRVVLLRLLAERQIVVA 182

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +  +++ R+ R+     ++  ++D+  L+ G  +TR++A   L + 
Sbjct: 183 PAIVDWLLPRLPRTAATMLEVARRLDHATLATGRAVTRAMAVGELHDL 230


>gi|254419375|ref|ZP_05033099.1| chromosomal replication initiator protein DnaA [Brevundimonas sp.
           BAL3]
 gi|196185552|gb|EDX80528.1| chromosomal replication initiator protein DnaA [Brevundimonas sp.
           BAL3]
          Length = 224

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 8/224 (3%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +   EQL     R   ++ +  +   +  +AVR++  WP     V+ L GP+GSGKS LA
Sbjct: 3   RPNAEQLRLPLERP--LAGEAFVSSDSNAEAVRVLSRWPDGAGSVLALYGPAGSGKSRLA 60

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
             W+++  +   + +  +L   L    +PVLL+     D +D  LFH+IN  H    +LL
Sbjct: 61  ADWAERVGAVPLNGVEAALVDPLELEGRPVLLDRA--RDADDESLFHLINLAHTGGGALL 118

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           + +R  P +W V LPDL SRL A   V +  PDD  L  ++   FA+R I    ++ AY+
Sbjct: 119 LVSRAAPRNWSVALPDLRSRLDAVRTVAVEAPDDRVLSAILRARFAERSIAPTDEVIAYL 178

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           V+R++RS   A   V+++D    +    +TR+LA +VL E    
Sbjct: 179 VRRLDRSADTAATAVERLD----ALHRPVTRALARQVLDEMSAA 218


>gi|56416571|ref|YP_153645.1| hypothetical protein AM296 [Anaplasma marginale str. St. Maries]
 gi|222474938|ref|YP_002563353.1| hypothetical protein AMF_220 [Anaplasma marginale str. Florida]
 gi|255002912|ref|ZP_05277876.1| hypothetical protein AmarPR_01147 [Anaplasma marginale str. Puerto
           Rico]
 gi|255004040|ref|ZP_05278841.1| hypothetical protein AmarV_01241 [Anaplasma marginale str.
           Virginia]
 gi|56387803|gb|AAV86390.1| hypothetical protein AM296 [Anaplasma marginale str. St. Maries]
 gi|222419074|gb|ACM49097.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
          Length = 221

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 5/218 (2%)

Query: 26  EQL-FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            QL  F           D ++         L+ +  SW     +L G SGSGK+ LA++W
Sbjct: 3   RQLKLFDTQEVHSYQCSDYILLDHNRHTYNLLMNTYSW--GCFVLYGKSGSGKTHLAHMW 60

Query: 85  SDKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
               +++   +     ++I  I     V++EDID L  +++ + H  N   +    LLMT
Sbjct: 61  QKLRKASFICHGQVIGEAIGTIRESSAVIIEDIDNLR-DESWVLHCYNFAREAGKPLLMT 119

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +   P      L DL SR+ +A    ++ PD++ L  ++VK+F DRQ+ ID +   YI+ 
Sbjct: 120 SSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKLFTDRQMHIDVRTVNYILN 179

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +ERS      +V+ +D    +   G+T      V++ 
Sbjct: 180 NVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIRR 217


>gi|254994786|ref|ZP_05276976.1| hypothetical protein AmarM_01237 [Anaplasma marginale str.
           Mississippi]
          Length = 221

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 5/218 (2%)

Query: 26  EQL-FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            QL  F           D ++         L+ +  SW     +L G SGSGK+ LA++W
Sbjct: 3   RQLKLFDTQEVHSYQCSDYILLDHNRHTYNLLMNTYSW--GCFVLYGKSGSGKTHLAHMW 60

Query: 85  SDKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
               +++   +     ++I  I     V++EDID L  +++ + H  N   +    LLMT
Sbjct: 61  QKLRKASFICHGQVIGEAIGTIRESSAVIIEDIDNLR-DESWVLHCYNFAREAGKPLLMT 119

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +   P      L DL SR+ +A    ++ PD++ L  ++VK+F DRQ+ ID +   YI+ 
Sbjct: 120 SSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKLFTDRQMHIDIRTVNYILN 179

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +ERS      +V+ +D    +   G+T      V++ 
Sbjct: 180 NVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIRR 217


>gi|297717796|gb|ADI50041.1| chromosomal replication initiator protein DnaA [Candidatus
           Odyssella thessalonicensis L13]
          Length = 217

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 3/213 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL    P  L      L++ +A       + +WPSWP   V++VG  GSGK+ +A   S
Sbjct: 2   QQLAIPLPDQLVTDSSTLIIEAANRDVWAWLSAWPSWPLPQVVIVGAKGSGKTHMAKALS 61

Query: 86  DKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
            + R++  S  A     + LI +   +L+++ +     +  LFH+ N   ++   ++   
Sbjct: 62  AQQRASLISPSAVIHPPLALIQSADLILIDNYEQYG--EDWLFHLYNLAKEHHRQVVYFG 119

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
            T P S+   + DL SRL++   ++I  PDD    K+  K   +R +     +  YI +R
Sbjct: 120 HTTPASYSFKIHDLASRLRSLPCLEIQEPDDSLFRKLFRKELLNRGMVCGDDILEYIYRR 179

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
            +RS      LV  +D L L +   +T  L  E
Sbjct: 180 FDRSYATIHHLVKLIDTLTLVQQRSLTLPLLKE 212


>gi|269959014|ref|YP_003328803.1| hypothetical protein ACIS_01000 [Anaplasma centrale str. Israel]
 gi|269848845|gb|ACZ49489.1| hypothetical protein ACIS_01000 [Anaplasma centrale str. Israel]
          Length = 221

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 26  EQL-FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            QL  F           D ++         L+ +   W     +L G SGSGK+ LA++W
Sbjct: 3   RQLKLFDTQEVHSYQCSDYILLDHNRHTYNLLMNSDDW--GCFVLYGKSGSGKTHLAHMW 60

Query: 85  SDKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
               ++          ++I  I     V++EDID L  +++ + H  N   +    LLMT
Sbjct: 61  KKLRKANFICYDQVIGEAIGAIRESSAVIIEDIDNLS-DESWVLHCYNFAREAGKPLLMT 119

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +   P      L DL SR+ +A    ++ PD++ L  ++VK+F DRQ+ ID +   YI+ 
Sbjct: 120 SSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKLFTDRQMHIDIRTVNYILN 179

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            +ERS      +V+ +D    +   G+T      V++ + 
Sbjct: 180 NVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIRRSS 219


>gi|94497909|ref|ZP_01304474.1| ATPase [Sphingomonas sp. SKA58]
 gi|94422637|gb|EAT07673.1| ATPase [Sphingomonas sp. SKA58]
          Length = 216

 Score =  198 bits (503), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 18/216 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           Q+   F    G    D LV  A   AV  ++ W  WP  + +L GP  SG+S LA  ++ 
Sbjct: 3   QISLPFEGHEGRGEGDFLVSDANRVAVAYLERWRDWPLSIAVLTGPPRSGRSTLARQFAR 62

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
            S      +  +    +                  +D +LFH  N+       LL+  + 
Sbjct: 63  MSGGDVIDDAHEGDRPL------------------DDHRLFHAWNAAQTEHRPLLLVGQA 104

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P +W V LPDL SRL A   V I  PD+     +I + F          L  ++ +R++
Sbjct: 105 PPATWPVTLPDLRSRLAAVPHVGIDAPDEMLTRALIQRSFDAAGAAYSADLPDWLARRID 164

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           RS    E +   +D  ALS G  I+ ++A E L+  
Sbjct: 165 RSYAAIETITRLLDRAALSSGRKISVAMAKEALQSA 200


>gi|329850486|ref|ZP_08265331.1| bacterial dnaA family protein [Asticcacaulis biprosthecum C19]
 gi|328840801|gb|EGF90372.1| bacterial dnaA family protein [Asticcacaulis biprosthecum C19]
          Length = 223

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 5/219 (2%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL          SRD    ++A++  + ++    +W S  +IL GPSG+GKS LA+I+
Sbjct: 2   ARQLPLDLELPDRFSRDSFATNAALQAVLDVLLVPQAWISPHLILQGPSGTGKSHLAHIF 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
           + ++ +   +        +   T   V+    D    ++  LFH+ N + +    L++T 
Sbjct: 62  AAETGAHLLTADDTYQLDLAALTGSYVV---DDAETASEEALFHLSNYVQKSGQHLVLTT 118

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           +  P+ W   LPDL SRL+A  ++ +  PD+D L  V+ K+FA R I       AY+  R
Sbjct: 119 KIQPIIWQTALPDLGSRLRAMRLMVLPEPDEDLLAAVLKKLFAQRFIQPSDDTLAYLSTR 178

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +ERS+  A+K+V ++++ A   G    ++L  + L++++
Sbjct: 179 VERSVPAAQKIVTELEHHA--NGRAFNKTLIRDFLEQSE 215


>gi|258541973|ref|YP_003187406.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256633051|dbj|BAH99026.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636108|dbj|BAI02077.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639163|dbj|BAI05125.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642217|dbj|BAI08172.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645272|dbj|BAI11220.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648327|dbj|BAI14268.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651380|dbj|BAI17314.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654371|dbj|BAI20298.1| chromosomal replication initiator protein DnaA-related protein
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 255

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 8/236 (3%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---DSWPSWPSRVVILV 70
             QK     N+ EQ+   F       R D +   +   A   +   ++   WP   + L 
Sbjct: 16  GGQKRQNEANEAEQIALPFAHRPRFGRSDFVAAPSNAAARAWVLDAEAAARWPEGRMALW 75

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFNDTQL 126
           G SG+GK+ L +IW+ +  +        +     +       +   L++ D +  N+  L
Sbjct: 76  GESGTGKTHLLSIWAGRYGAPIMEGSRLNTHEAAMLFEDGGFRAAALDNADKVP-NERDL 134

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            H+IN   +   +LLM AR  P  W V LPDL SRL+A   V +   ++  L ++++++ 
Sbjct: 135 LHLINLARERRVALLMAARRPPARWPVVLPDLASRLRATASVPLGPAEEGLLHRLLLRLL 194

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           A+RQI +  ++  ++++R+ R        V  +D  AL  G  ITR+LAA VL+  
Sbjct: 195 AERQIVVGAQVTEWLLRRLPRRASAVRDCVAMLDQAALESGGRITRALAANVLESL 250


>gi|148552965|ref|YP_001260547.1| DNA replication initiation ATPase [Sphingomonas wittichii RW1]
 gi|148498155|gb|ABQ66409.1| ATPase involved in DNA replication initiation [Sphingomonas
           wittichii RW1]
          Length = 207

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 22/215 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +Q+   F         D +V  A   AVR ++ W  WP    +L GP  SG+S L  I++
Sbjct: 3   DQIALPFVWPAEEDERDFIVSEANSTAVRHLEHWSLWPVMATVLTGPRKSGRSLLGRIFA 62

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
            K+                        +++ D    ++ +LFH  N+       LL+ A 
Sbjct: 63  AKTGGR--------------------FVDNAD--AQDEEKLFHAWNAAQADRKPLLLAAD 100

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
                W + LPDL SRL A+  V I  PD   +  ++ K+   R + +  ++  Y+  R+
Sbjct: 101 LPSARWRIKLPDLRSRLLASPHVAIEEPDFPLMLGLVEKLLHVRGLAVRPEVVRYVASRI 160

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ERS V   ++VD +D  AL+R   IT ++A E L 
Sbjct: 161 ERSYVGIGRIVDALDEAALARRRPITMAVAREALA 195


>gi|329114266|ref|ZP_08243028.1| Hypothetical protein APO_1054 [Acetobacter pomorum DM001]
 gi|326696342|gb|EGE48021.1| Hypothetical protein APO_1054 [Acetobacter pomorum DM001]
          Length = 255

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 8/236 (3%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---DSWPSWPSRVVILV 70
             QK      + EQ+   F       R D +   +   A   +   ++   WP   + L 
Sbjct: 16  GGQKRQNEATEAEQIALPFAHRPRFGRSDFVAAPSNAAARAWVLDAEAAARWPEGRMALW 75

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFNDTQL 126
           G SG+GK+ L +IW+ +  +        +     +       +   L++ D +  N+  L
Sbjct: 76  GESGTGKTHLLSIWAGRYGAPIMEGSRLNTHEAAMLFEDGGFRAAALDNADKVP-NERDL 134

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            H+IN   +   +LLM AR  P  W V LPDL SRL+A   V +   ++  L ++++++ 
Sbjct: 135 LHLINLARERRVALLMAARRPPARWPVVLPDLASRLRATASVPLGPAEEGLLHRLLLRLL 194

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           A+RQI +  ++  ++++R+ R        V  +D  AL  G  ITR LAA VL+  
Sbjct: 195 AERQIVVGAQVTEWLLRRLPRRASAMRDCVAMLDQAALESGGRITRDLAANVLESL 250


>gi|58584988|ref|YP_198561.1| DNA replication initiation ATPase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419304|gb|AAW71319.1| Possible ATPase involved in DNA replication initiation, DnaA
           paralog [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 211

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 8/216 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       +  SR + ++    +     + +  SW  + + L GP GSGK+ LA+IW 
Sbjct: 1   MQLNLFNNNQVDYSRQNYIILDENKHIYNAVINDLSW--KYLFLFGPKGSGKTHLAHIWQ 58

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
             + +  F N+   +  I        +LED+  +  ++  L H  N + + +  LL+T+ 
Sbjct: 59  SINNA-IFINVNNFISEIRY--SNAFILEDVQDIQ-DEATLLHCYNYMKENNKRLLITSS 114

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
           T P      L DL SR+ +    KI    ++ L  +++K F+D+Q+ +D K+  YI+ R+
Sbjct: 115 TSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARI 174

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ERS     ++++K+DN ++  G  +T    + +LK 
Sbjct: 175 ERSFCSINRIIEKIDNGSM--GSNVTIPFVSTLLKR 208


>gi|88607408|ref|YP_505556.1| hypothetical protein APH_0994 [Anaplasma phagocytophilum HZ]
 gi|88598471|gb|ABD43941.1| conserved hypothetical protein [Anaplasma phagocytophilum HZ]
          Length = 220

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 4/218 (1%)

Query: 27  QL-FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           QL  F           D +V  +      L+ +   W S   +L G  GSGK+ LA++W 
Sbjct: 4   QLKLFDVKEMHSYQCSDYVVLDSNRHTYNLLMNSDLWSS--FVLYGVKGSGKTHLAHLWG 61

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
              +++  +    S    +I     V+ EDID +  ++  L H  N   +     LMTA 
Sbjct: 62  KLKQASFLTYGKISDAIQVIKESNAVIAEDIDSIP-DEEWLLHCYNYSKENRKPFLMTAS 120

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P      L DL SR+ +    K+  P+++ L  ++VK+F +RQ+ ID K   YI+  +
Sbjct: 121 VPPNLLNHSLKDLRSRIISTMSAKLVEPNEELLRIMLVKLFTERQLHIDIKTINYILNNV 180

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           ERS      +V  +D    S   G+T      +++  +
Sbjct: 181 ERSFKKLSDIVRLIDIELTSSAGGVTVPFVRSIIRRVE 218


>gi|58040365|ref|YP_192329.1| DnaA-related protein [Gluconobacter oxydans 621H]
 gi|58002779|gb|AAW61673.1| DnaA-related protein [Gluconobacter oxydans 621H]
          Length = 253

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 4/222 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           Q+ F   R   ++ +  +   +   A   +     WP   + L G SG+GK+ L   W+ 
Sbjct: 33  QMAFPLRRVTAMTSERFINGPSNAAARAWLARNQ-WPDGRLWLWGSSGTGKTHLLTAWAH 91

Query: 87  KSRSTRFSN--IAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
           +  +T       + S     I  +  + +++ D    ++  + H++N        +LM  
Sbjct: 92  EHDATVLDARLFSTSSAGGRIRVQGNLAIDNADS-PGDEATMLHLLNDAFSQGDRVLMAG 150

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           R  P      LPDL SRL+A        P+DD    +++ + ADRQ+ + + +  ++ + 
Sbjct: 151 RLPPSRSHFMLPDLASRLRATATTATGEPEDDLRATLLLSLLADRQLVVSQTVTEWLWRH 210

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + R+       V+++D  AL+R   ITR+LA E+L +    +
Sbjct: 211 LPRTGNALVSAVERLDEAALARKRPITRALAMEMLPDLLTPE 252


>gi|39996180|ref|NP_952131.1| chromosomal replication initiator protein DnaA, truncation
           [Geobacter sulfurreducens PCA]
 gi|39982945|gb|AAR34404.1| chromosomal replication initiator protein DnaA, truncation
           [Geobacter sulfurreducens PCA]
          Length = 258

 Score =  191 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 26/253 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILV 70
           P K ++ +P     QL F FP     S D+ ++ +  E A R        S    ++ L 
Sbjct: 5   PGKARSSRP-FPAMQLVFDFPVTPKYSFDNFVICAGNETACRFARRLTDESGSENLLYLH 63

Query: 71  GPSGSGKSCLA----NIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           GPSGSGK+ L       ++ +                     +     S  +        
Sbjct: 64  GPSGSGKTHLLMAMGACFAGRVGLRAVPCISFKDVDEIYHGEYPAEEVSRLAERFRGAPA 123

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++D+ L+    +   +L+ + N  +Q    + +T    P         L SRL    V
Sbjct: 124 LLVDDLHLIPDQQSVRVELWQLFNDFYQAGRPIAITGLNPPNELPTLDGHLTSRLLWGLV 183

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            K  + DDD   +++ K+  DRQI +      Y++  + R +      +D +   A S  
Sbjct: 184 AKTDISDDDSRRRIMQKLADDRQIILPADAVDYLLVHVRRDVPSLVAALDAITRYAFSAK 243

Query: 228 MGITRSLAAEVLK 240
             IT  LA E L 
Sbjct: 244 RKITMRLAREALA 256


>gi|42520947|ref|NP_966862.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58696878|ref|ZP_00372391.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698753|ref|ZP_00373637.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|99034226|ref|ZP_01314294.1| hypothetical protein Wendoof_01000909 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|225630699|ref|YP_002727490.1| chromosomal DNA replication initiator-related protein [Wolbachia
           sp. wRi]
 gi|42410688|gb|AAS14796.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58534726|gb|EAL58841.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536904|gb|EAL60088.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592680|gb|ACN95699.1| chromosomal DNA replication initiator-related protein [Wolbachia
           sp. wRi]
          Length = 211

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 8/216 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL          SR + ++    +     + +  SW  + +IL GP  SGK+ LA+IW 
Sbjct: 1   MQLNLFNNNQADYSRQNYIILDENKHVYNSVVNDLSW--KCLILFGPKSSGKTHLAHIWQ 58

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
             + +   +      +   I      +LED+  +  ++  L H  N + + D  LL+T+ 
Sbjct: 59  SINDAIFINVNNFVSE---IRYSDAFILEDVQNI-KDEAMLLHCYNYMKENDKRLLITSS 114

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P      L DL SR+ +   VKI    ++ L  +++K F+D+Q+ ID K+  YI+ R+
Sbjct: 115 ISPKKLNFKLRDLSSRILSTISVKILPASEELLRIMLIKRFSDKQLKIDLKVINYILARI 174

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ERS    +K+++K+DN ++  G  +T    + +LK+
Sbjct: 175 ERSFYSIDKIIEKIDNESI--GSNVTVPFISTLLKK 208


>gi|167646514|ref|YP_001684177.1| DnaA-like protein [Caulobacter sp. K31]
 gi|167348944|gb|ABZ71679.1| DnaA-related protein [Caulobacter sp. K31]
          Length = 233

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             Q            R+         QA+  +D+WP+WP   + LVGP+G+GK+ LA  W
Sbjct: 2   PRQFRLPLTTPPCWDRESFASSPTNAQALAGLDAWPAWPDGRLALVGPAGTGKTHLARDW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDT--RKPVLLEDIDLLD----FNDTQLFHIINSIHQYDS 138
           + ++ +        +   + + +   +P+L+ED D        +D  LFH+IN       
Sbjct: 62  ARRAGAVVIEAATLNHAPLDLASLRGRPLLVEDADRRADGDLVDDETLFHLINMAGVDGG 121

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           SLL+T R  PV+W   +PDL SRL A TV +I  PDD  LE V+ + F    I     L 
Sbjct: 122 SLLLTGRLAPVAWEAAVPDLRSRLNALTVARIVEPDDIVLEAVLRRGFEAAGIRPTADLY 181

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            Y++ R+ RS   A   V  +D  A ++G  + ++LA  VL 
Sbjct: 182 PYLMARLPRSAPAALAAVAALDEAAAAQGREVNKALALAVLD 223


>gi|103487240|ref|YP_616801.1| ATPase involved in DNA replication initiation [Sphingopyxis
           alaskensis RB2256]
 gi|98977317|gb|ABF53468.1| ATPase involved in DNA replication initiation [Sphingopyxis
           alaskensis RB2256]
          Length = 220

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 23/219 (10%)

Query: 22  KNKEEQLFFSFPRCLGISRD-DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           +    Q+        G + D  L++ ++   AVR +    +WP R  +L GP GSG+S +
Sbjct: 4   RAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGRSLM 63

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
             +++  +                                  + +LFH  N+     S L
Sbjct: 64  GRLFARDTGGRVIDG----------------------HTSVGEEELFHAWNAAQASGSPL 101

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+ A   P  W V LPDL SRL A  V+ I  PDD     +I  +FA R + +   +A+Y
Sbjct: 102 LVIADAPPAEWNVALPDLRSRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVASY 161

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           IV RMERS     ++V  +D  +L +G  +   LA E L
Sbjct: 162 IVPRMERSYAMIHRIVAALDAASLEQGRRLGVRLARETL 200


>gi|78221967|ref|YP_383714.1| regulatory inactivation of DnaA Hda protein [Geobacter
           metallireducens GS-15]
 gi|78193222|gb|ABB30989.1| regulatory inactivation of DnaA Hda protein [Geobacter
           metallireducens GS-15]
          Length = 243

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 94/240 (39%), Gaps = 25/240 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS--WPSRVVILVGPSGSGKSCLA-- 81
            QL F FP     S D+ ++ S  E A R +           ++ L GPSGSGK+ L   
Sbjct: 1   MQLVFDFPVNPKYSLDNFVICSGNETAYRFVRRLTDDEGAENLLYLHGPSGSGKTHLLMA 60

Query: 82  --NIWSDKSR----------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
               +S ++                    +   A S  +        +L++D+ L+    
Sbjct: 61  IGAHFSARAGLSSVPCISFKDVDEVYGGEYPAEAVSKLAERFRNAPALLVDDLHLIPDQQ 120

Query: 124 T---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               +L+ + N  +Q    + +T    P         L SRL    V ++ + DDD    
Sbjct: 121 AVRVELWQLFNDFYQAGRPIAITGLYPPKELPTIDDHLISRLLWGLVARVDISDDDSRRL 180

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++ K+  DRQI +   +  Y++  + R +    + +D +   AL+    ++  LA E L 
Sbjct: 181 IMKKLADDRQIVLPADVIDYLLLHVRRDVPSLIEALDAISRYALAAKRKVSVRLAREALA 240


>gi|190571370|ref|YP_001975728.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018769|ref|ZP_03334577.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357642|emb|CAQ55086.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995720|gb|EEB56360.1| chromosomal DNA replication initiator-related protein [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 211

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 8/219 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       +     + +     +     I +  SW  + +IL GP+ SGK+ LA+IW 
Sbjct: 1   MQLNLFNNNQVDYCWQNYITLDENKHVYNSIVNDLSW--KCLILFGPNSSGKTHLAHIWQ 58

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
            K+ +          +    D     +LED+  +  ++  L H  N + + D  LL+T+ 
Sbjct: 59  SKNDAIFIDVNNFVSEMRYSD---AFILEDVQNI-KDEEMLLHCYNYMKENDKRLLITSS 114

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P      L DL SR+ +   VKI    ++ L  +++K F+D+Q+ ID K+  YI+ R+
Sbjct: 115 ILPKKLNFKLKDLSSRILSTISVKILPASEELLRIMLIKQFSDKQLKIDLKVIDYILARI 174

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ERS     K+++K+DN ++  G  +T      +LK++  
Sbjct: 175 ERSFHSINKVIEKIDNESI--GSNVTIPFINTLLKKSAN 211


>gi|66046915|ref|YP_236756.1| DNA replication initiation factor [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257622|gb|AAY38718.1| DnaA family protein [Pseudomonas syringae pv. syringae B728a]
          Length = 261

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 17/232 (7%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSC 79
           K  QL  S       +  +     A   A+    RL ++   W   ++ L G  G G++ 
Sbjct: 29  KPIQLPLSVRLRDDATFVNYYPG-ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTH 87

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127
           L      +        +   L  ++         ++  + V L+D+  +      +  LF
Sbjct: 88  LLQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALF 147

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H+ N +      LL+ A   P    V LPDL SRL  A V ++    D+   + +    +
Sbjct: 148 HLFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRAS 207

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R + +   +  +I+ R  RS+    +L++++D  +L     +T     E L
Sbjct: 208 RRGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 259


>gi|121997504|ref|YP_001002291.1| chromosomal replication initiator, DnaA [Halorhodospira halophila
           SL1]
 gi|121588909|gb|ABM61489.1| regulatory inactivation of DnaA Hda protein [Halorhodospira
           halophila SL1]
          Length = 241

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 15/235 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANI 83
            QL  +         D  +     + A+RL+         +  + L GP G GKS L   
Sbjct: 1   MQLPLNIRWNAAAELDRFVPGE-NDTALRLVTDLADGLLEAPALYLHGPHGVGKSHLLQG 59

Query: 84  WSDKSRSTRFSNIAKSLDSILI---------DTRKPVLLEDIDLLDFNDT---QLFHIIN 131
              +  +     +   LD +L          +  + + L+D+D LD  D     +FH+ N
Sbjct: 60  ACRRVTTAGGVAVYLPLDQLLGHGAAVLDGWEQAQLIALDDLDALDGRDEWQGAVFHLYN 119

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
            + +    LL   R  P    + LPDL SRL    VV +  PD+     ++ +  A R +
Sbjct: 120 RVVERGGRLLFAGRQPPAELPLDLPDLRSRLGWGPVVAVREPDETTCLAILRQRAAQRGL 179

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            +    A Y+++R+ R L       + +D  +L+ G  +T     E+L E  + D
Sbjct: 180 ELPDATARYLIRRLPRELPGLLAFFETLDRASLAAGRRLTVPFVREILAERSRPD 234


>gi|146308015|ref|YP_001188480.1| DNA replication initiation factor [Pseudomonas mendocina ymp]
 gi|145576216|gb|ABP85748.1| regulatory inactivation of DnaA Hda protein [Pseudomonas mendocina
           ymp]
          Length = 234

 Score =  188 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL          +  +       +A+    RL ++   W   ++ L G  G G+S L
Sbjct: 2   KPIQLPLGVRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGAEGVGRSHL 61

Query: 81  ANIWS----DKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFH 128
                     +  +  +  + + +         ++  + V L+D+D +      +  LFH
Sbjct: 62  LQAACLRFEQRGDAVVYLPLTEVVQHGPELLDNLELCELVCLDDLDAVAGRSDWEEGLFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+     P    + LPDL SRL  A V ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLLAGTMSPRELPIQLPDLKSRLTLALVFQLHELSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R ERS+    +L++++D  +L     +T     E L
Sbjct: 182 RGLQMSDEVGRFILTRGERSMSALFELLERLDQASLQAQRKLTIPFLKETL 232


>gi|226945733|ref|YP_002800806.1| DNA replication initiation factor [Azotobacter vinelandii DJ]
 gi|226720660|gb|ACO79831.1| DnaA family protein, probable Hda [Azotobacter vinelandii DJ]
          Length = 234

 Score =  188 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL          +  +       +A+  A RL +    W   ++ L G  G G+S L
Sbjct: 2   KPIQLPLGVRLRDDATFANFYPGANAAALGYAERLCEPDAGWTESLIYLWGAEGVGRSHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +    R   I   L  +          ++  + V L+D++ +      +  LFH
Sbjct: 62  LQAACIRFEQRRELAIYLPLAEVADYGPVLLDNLEQSELVCLDDLEAIAGRADWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL++A   P    + LPDL SRL  A V ++    D+   + +    + 
Sbjct: 122 LFNRLRDCGRRLLLSASVPPRELSIELPDLKSRLTLALVFQLQGLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R  RS+     L+DK+D  +L     +T     E L
Sbjct: 182 RGLHLTDEVGRFILTRGSRSMAALFDLLDKLDQASLQAQRRLTIPFLKETL 232


>gi|330504184|ref|YP_004381053.1| DNA replication initiation factor [Pseudomonas mendocina NK-01]
 gi|328918469|gb|AEB59300.1| DNA replication initiation factor [Pseudomonas mendocina NK-01]
          Length = 234

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL          +  +       +A+    RL ++   W   ++ L G  G G+S L
Sbjct: 2   KPIQLPLGVRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGAEGVGRSHL 61

Query: 81  ANIWS----DKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFH 128
                     +  +  +  + + +         ++  + V L+D+D +      +  LFH
Sbjct: 62  LQAACLRFEQRGEAVVYLPLGEVVQHGPELLDNLELCELVCLDDLDAVAGRSDWEEGLFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+     P    + LPDL SRL  A V ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLLAGTMSPRELPIQLPDLKSRLTLALVFQLHELSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R ERS+     L++++D  +L     +T     E L
Sbjct: 182 RGLQMGDEVGRFILTRGERSMSALFDLLERLDQASLQAQRKLTIPFLKETL 232


>gi|330941426|gb|EGH44239.1| DNA replication initiation factor [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 234

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL  S       +  +       +A+    RL ++   W   V+ L G  G G++ L
Sbjct: 2   KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTQSVIYLWGKDGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  ++         ++  + V L+D+  +      +  LFH
Sbjct: 62  LQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    V LPDL SRL  A V ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAASKSPPQLPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +   +  +I+ R  RS+    +L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232


>gi|331013495|gb|EGH93551.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 234

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL  S       +  +       +A+    RL ++   W   ++ L G  G G++ L
Sbjct: 2   KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  ++         ++  + V L+D+  +      +  LFH
Sbjct: 62  LQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    V LPDL SRL  A V ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAASKSPPELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R  RS+    +L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232


>gi|28868909|ref|NP_791528.1| DnaA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971898|ref|ZP_03399998.1| DnaA family protein [Pseudomonas syringae pv. tomato T1]
 gi|301384468|ref|ZP_07232886.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062183|ref|ZP_07253724.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato
           K40]
 gi|302131786|ref|ZP_07257776.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|302187852|ref|ZP_07264525.1| DNA replication initiation factor [Pseudomonas syringae pv.
           syringae 642]
 gi|28852148|gb|AAO55223.1| DnaA family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213923323|gb|EEB56918.1| DnaA family protein [Pseudomonas syringae pv. tomato T1]
 gi|330877082|gb|EGH11231.1| DNA replication initiation factor [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330966590|gb|EGH66850.1| DNA replication initiation factor [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016800|gb|EGH96856.1| DNA replication initiation factor [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 234

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL  S       +  +       +A+    RL ++   W   ++ L G  G G++ L
Sbjct: 2   KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  ++         ++  + V L+D+  +      +  LFH
Sbjct: 62  LQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    V LPDL SRL  A V ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +   +  +I+ R  RS+    +L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232


>gi|237798977|ref|ZP_04587438.1| DNA replication initiation factor [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021831|gb|EGI01888.1| DNA replication initiation factor [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 234

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL  S       +  +       +A+    RL ++   W   ++ L G  G G++ L
Sbjct: 2   KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   +  ++         ++  + V L+D+  +      +  LFH
Sbjct: 62  LQAACLRFEQMGEPAVYLPMAEVIDEGIELFDHLEQYELVCLDDLQAVVGKPDWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    V LPDL SRL  A V ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +   +  +I+ R  RS+    +L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232


>gi|71734306|ref|YP_275849.1| DNA replication initiation factor [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485896|ref|ZP_05639937.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289628380|ref|ZP_06461334.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648134|ref|ZP_06479477.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487973|ref|ZP_07006012.1| Chromosomal replication initiator protein dnaA [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|71554859|gb|AAZ34070.1| DnaA family protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298157524|gb|EFH98605.1| Chromosomal replication initiator protein dnaA [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320323391|gb|EFW79479.1| DNA replication initiation factor [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327588|gb|EFW83600.1| DNA replication initiation factor [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866057|gb|EGH00766.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330876426|gb|EGH10575.1| DNA replication initiation factor [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330889389|gb|EGH22050.1| DNA replication initiation factor [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986707|gb|EGH84810.1| DNA replication initiation factor [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 234

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL  S       +  +       +A+    RL ++   W   ++ L G  G G++ L
Sbjct: 2   KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  ++         ++  + V L+D+  +      +  LFH
Sbjct: 62  LQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    V LPDL SRL  A V ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R  RS+    +L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232


>gi|330960588|gb|EGH60848.1| DNA replication initiation factor [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 234

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL  S       +  +       +A+    RL ++   W   ++ L G  G G++ L
Sbjct: 2   KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  ++         ++  + V L+D+  +      +  LFH
Sbjct: 62  LQAACLRFEQMGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAVVGKPDWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    V LPDL SRL  A V ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +   +  +I+ R  RS+    +L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232


>gi|330953483|gb|EGH53743.1| DNA replication initiation factor [Pseudomonas syringae Cit 7]
 gi|330972385|gb|EGH72451.1| DNA replication initiation factor [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330980218|gb|EGH78371.1| DNA replication initiation factor [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 234

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL  S       +  +       +A+    RL ++   W   ++ L G  G G++ L
Sbjct: 2   KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  ++         ++  + V L+D+  +      +  LFH
Sbjct: 62  LQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    V LPDL SRL  A V ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +   +  +I+ R  RS+    +L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232


>gi|73666826|ref|YP_302842.1| chromosomal DNA replication initiator-related protein [Ehrlichia
           canis str. Jake]
 gi|72393967|gb|AAZ68244.1| chromosomal DNA replication initiator-related protein [Ehrlichia
           canis str. Jake]
          Length = 218

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 26  EQLF-FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            QL  F           D ++    +    ++ +   W     IL G SGSGK+ LA+IW
Sbjct: 1   MQLTLFDLEDSYSYHYHDYILLEQNKATYNMLMN-QEW--NSFILYGKSGSGKTHLAHIW 57

Query: 85  SDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
                +        +    + D        ++E+ID +D N+  + H  N I +    LL
Sbjct: 58  QKLKNAIFIDQYLINTKEDIGDIISNNNAFIIENIDNID-NELSILHYYNYIKENKKLLL 116

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT+   P      + DL SR+      K++ PD++ L+ +++K+FAD+QI I+ K+  YI
Sbjct: 117 MTSSIAPRLLNYHIKDLKSRILHTMSAKLANPDEELLKIMLIKLFADKQIHIELKVINYI 176

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +   ERS      +V  +D        G+T      ++++  
Sbjct: 177 LNNTERSFQNLSNIVKCIDRNLPYYNNGVTIPFVKSIIEKND 218


>gi|68171570|ref|ZP_00544945.1| chromosomal DNA replication initiator-related protein [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658126|ref|YP_507704.1| hypothetical protein ECH_0913 [Ehrlichia chaffeensis str. Arkansas]
 gi|67999011|gb|EAM85687.1| chromosomal DNA replication initiator-related protein [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599583|gb|ABD45052.1| conserved hypothetical protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 218

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 8/222 (3%)

Query: 26  EQLF-FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            QL  F           D ++         ++ +   W     IL G SGSGK+ LA+IW
Sbjct: 1   MQLTLFDLEDSYSYHYHDYILLEQNRTTYNMLMN-QEW--NSFILYGKSGSGKTHLAHIW 57

Query: 85  SDKSRSTRFSNIAKSLDSILIDT---RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
                +        +    + DT       ++E+ID +D N+  + H  N I +    LL
Sbjct: 58  QKLKNAIFIDQHLINTKKDIGDTISNGNAFIIENIDNID-NELSMLHHYNYIKENKKLLL 116

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT+   P        DL SR+      K++ PD++ L+ +++K+FAD+QI I+ K+  YI
Sbjct: 117 MTSSIAPTLLNYHTKDLKSRILHTMSAKLANPDEELLKIMLIKLFADKQIHIELKVINYI 176

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +   ERS      +V  +D        G+T      ++++  
Sbjct: 177 LNNTERSFQNLSNIVKCIDRNLPYYNNGVTIPFVKSIIEKND 218


>gi|16125955|ref|NP_420519.1| DnaA-like protein [Caulobacter crescentus CB15]
 gi|221234720|ref|YP_002517156.1| DnaA-like protein [Caulobacter crescentus NA1000]
 gi|13423125|gb|AAK23687.1| DnaA-related protein [Caulobacter crescentus CB15]
 gi|220963892|gb|ACL95248.1| chromosome replication regulator protein HdaA [Caulobacter
           crescentus NA1000]
          Length = 230

 Score =  184 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 6/228 (2%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             Q        L   R+D  V  +  +AV  +D+WP W    ++LVGP+G GKS LA  W
Sbjct: 2   STQFKLPLASPLTHGREDFAVSPSNGEAVARLDAWPDWAEGRLVLVGPAGCGKSHLARAW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDT--RKPVLLEDIDL----LDFNDTQLFHIINSIHQYDS 138
           +  + +           S+ +     + VL+ED D        +D  LFHI+N       
Sbjct: 62  AAAAGAVVVEAANPDAASVDLSALRGRAVLVEDADRRAQGAAVSDEALFHILNMAGVDGG 121

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           ++L+T RT P++W   + DL SRL A +V +I+ PDD  LE V+ + FA      +  L 
Sbjct: 122 TVLLTGRTAPLTWSAEVADLRSRLNALSVAEIAEPDDAVLEAVLRRAFAAAWWKPEPDLY 181

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            Y++ R+ RS   A+     +   A      +T++LA EVL+  +  +
Sbjct: 182 PYLLARLPRSAAEAQAAAALLAEAAADGRRELTKALAREVLEGFEGDE 229


>gi|294012891|ref|YP_003546351.1| putative ATPase [Sphingobium japonicum UT26S]
 gi|292676221|dbj|BAI97739.1| putative ATPase [Sphingobium japonicum UT26S]
          Length = 204

 Score =  184 bits (468), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 22/217 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            Q+   F R    + D+ LV  A   AVR +++W +WP  V +L GP  SG+S L   ++
Sbjct: 2   RQISLPFDRPDHATADEFLVSDANRIAVRHLENWRNWPLAVSVLSGPPLSGRSTLGRHFA 61

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
            +S  T                         D    ++  LF+  N        LL+ A 
Sbjct: 62  AQSGGTVID----------------------DAQRQDERTLFNAWNDAQTAQRPLLLMAD 99

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P  W V LPDL SRL AA  V +  PD+     +I +  +         L  ++++R+
Sbjct: 100 APPAIWQVALPDLRSRLAAAPHVALEEPDEALARALIERSLSSAGASYAADLPEWLLRRI 159

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ERS          +D  ALS G  I+ ++A  VL+  
Sbjct: 160 ERSYAAITAATRLLDEAALSSGRKISTAMAKHVLQGA 196


>gi|327481530|gb|AEA84840.1| DNA replication initiation factor [Pseudomonas stutzeri DSM 4166]
          Length = 234

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 88/231 (38%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL          +  +       +A+    RL      W   ++ L G  G G+S L
Sbjct: 2   KPIQLPLGVRLRDDATFANFYPGANAAALGYVERLCSPAAGWSDELIYLWGQPGVGRSHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  +          ++  + V L+D+D +  +   +  LFH
Sbjct: 62  LQAACLRVEERGELAVYLPLAEVAEYGPALLDNLEQSELVCLDDLDAVAGDAIWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    + LPDL SRL  A V ++    D+   + +    + 
Sbjct: 122 LFNRLRDAGRRLLLAADASPRELAIKLPDLQSRLSLALVFQLQQLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +   +  +I+ R  RS+    +L+D++D  +L     +T     E L
Sbjct: 182 RGLNLPDDVGRFILTRGSRSMNALFELLDQLDQASLQAQRKLTIPFLKETL 232


>gi|71083424|ref|YP_266143.1| DNA replication initiation ATPase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062537|gb|AAZ21540.1| probable ATPase involved in DNA replication initiation [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 220

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 2/191 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL   F        DD  V  +   A  +I+ WP W    + + G   SGKS L NI+  
Sbjct: 6   QLLLDFNYEQNFKDDDFYVGKSNFYAFEMINKWPKWEKNFLNINGEKFSGKSHLVNIFLK 65

Query: 87  KSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
           K    R    + + ++I  I   + ++LED++ L+ N+  ++ + N I Q +  L++T+ 
Sbjct: 66  KFNGIRIDVNSLNDENIKSIKPYQNIVLEDLN-LNINEKLIYSLFNIIDQDNKFLIVTSM 124

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
                    L DL SR K      I  PDD+ +  +I+K  +DRQI +DKKL  +I++R+
Sbjct: 125 KPISEINFKLEDLRSRTKNCLFANIQNPDDELMFALILKNLSDRQITLDKKLINFIIKRI 184

Query: 206 ERSLVFAEKLV 216
           ERS     + +
Sbjct: 185 ERSYGKIFEFI 195


>gi|91762153|ref|ZP_01264118.1| probable ATPase involved in DNA replication initiation [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717955|gb|EAS84605.1| probable ATPase involved in DNA replication initiation [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 224

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 2/191 (1%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL   F        DD  V  +   A  +I+ WP W    + + G   SGKS L NI+  
Sbjct: 10  QLLLDFNYEQNFKDDDFYVGKSNFYAFEMINKWPKWEKNFLNINGEKFSGKSHLVNIFLK 69

Query: 87  KSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
           K    R    + + ++I  I   + ++LED++ L+ N+  ++ + N I Q +  L++T+ 
Sbjct: 70  KFNGIRIDVNSLNDENIKSIKPYQNIVLEDLN-LNINEKLIYSLFNIIDQDNKFLIVTSM 128

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
                    L DL SR K      I  PDD+ +  +I+K  +DRQI +DKKL  +I++R+
Sbjct: 129 KPISEINFELEDLRSRTKNCLFANIQNPDDELMFALILKNLSDRQITLDKKLINFIIKRI 188

Query: 206 ERSLVFAEKLV 216
           ERS     + +
Sbjct: 189 ERSYGKIFEFI 199


>gi|170720412|ref|YP_001748100.1| DNA replication initiation factor [Pseudomonas putida W619]
 gi|169758415|gb|ACA71731.1| DnaA regulatory inactivator Hda [Pseudomonas putida W619]
          Length = 235

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
               QL          +  +       +A+    RL ++   W   ++ L G  G G+S 
Sbjct: 2   KPPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVGRSH 61

Query: 80  LANI----WSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLF 127
           L       +  +  +  +  +A+ L+  +     +   + V ++D+ ++      +  +F
Sbjct: 62  LLQAATHRFQQRGEAAVYLPLAQLLERGIGLLDYLAQYELVCIDDLHVIAGKAEWEEAMF 121

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H+ N +      LL+ A   P    + LPDL SRL  A V ++    D+   + +    +
Sbjct: 122 HLFNRLRDSGRRLLLAASASPRELPIRLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R + +  ++  +I+ R  RS+     L++++D  +L     +T     E L
Sbjct: 182 RRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETL 233


>gi|87198923|ref|YP_496180.1| ATPase [Novosphingobium aromaticivorans DSM 12444]
 gi|87134604|gb|ABD25346.1| ATPase [Novosphingobium aromaticivorans DSM 12444]
          Length = 204

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 22/216 (10%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
            + P       + +++  ++  A+  + S  SWP R  IL GP  SGKS LA  +++   
Sbjct: 5   IALPLVTARGSETVIMGPSLVPAINALQSADSWPFRTAILAGPPRSGKSLLARWFAE--- 61

Query: 90  STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                            +    +++  D L  ++  +FH  N        LL+     P 
Sbjct: 62  -----------------SGAGDVVDGADSLPEDE--VFHRWNRAQAEGRPLLLVCDRAPG 102

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
            W + LPDL SRL AA +++I  PDD+ +  +I++    R + I   + AY++ R+ERS 
Sbjct: 103 QWKIALPDLASRLGAALLIEIGPPDDELIAGLIMEHSMRRGLVIGDAVLAYLLPRVERSH 162

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
              E L++ +D L+L R   +T SL  + + E    
Sbjct: 163 AGIELLIETLDRLSLERKSPVTISLVRDAIAERTGA 198


>gi|114328698|ref|YP_745855.1| dnaA-like protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316872|gb|ABI62932.1| dnaA-related protein [Granulibacter bethesdensis CGDNIH1]
          Length = 246

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 3/224 (1%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +   QL   F         + L   +   A   +     WP   + L G  G+GK+ L +
Sbjct: 2   SAALQLGLPFAYEPAYRPSNFLEAPSNRAARAWLARTSEWPQGRLGLFGDEGTGKTHLLS 61

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
           IW+D   + R      SL  +      PV ++D D    ++  L H+IN+  +    +L+
Sbjct: 62  IWADLQEAER--RPGPSLRGLPRAPLAPVAVDDADATP-DEAALLHLINAAAEAGVPILL 118

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
            +R  P  W V LPDL SRL+A + V I  PDD  L  ++ ++  +RQ+ +   L ++++
Sbjct: 119 ASRLPPARWRVTLPDLASRLRATSSVGILPPDDALLRALLERLLTERQLSVPPSLQSWLL 178

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            R+ R+     ++  ++D  AL+ G  +T+ LAA +L    + D
Sbjct: 179 LRLPRTAWAVREVAARLDRAALAEGGRVTKILAARILNGLCESD 222


>gi|307293975|ref|ZP_07573819.1| putative ATPase [Sphingobium chlorophenolicum L-1]
 gi|306880126|gb|EFN11343.1| putative ATPase [Sphingobium chlorophenolicum L-1]
          Length = 204

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 22/217 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            Q+   F R      D+ LV  A   AVR +++W +WP  V +L GP  SG+S L   ++
Sbjct: 2   RQISLPFDRPDQAKADEFLVSEANRIAVRHLENWRNWPLAVSLLSGPPLSGRSTLGRHFA 61

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
            +S  T                         D    ++  LF+  N        LL+ A 
Sbjct: 62  AQSGGTVID----------------------DAQRQDERTLFNAWNDAQTAQRPLLLIAD 99

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P  W V LPDL SRL AA  V +  PD+     +I +  +         L  ++++R+
Sbjct: 100 APPAIWHVALPDLRSRLAAAPHVALHQPDEALARALIERSLSSTGASYAADLPEWLLRRI 159

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ERS          +D  +LS G  I+ ++A  VL++ 
Sbjct: 160 ERSYAAIAAATRLLDEASLSSGRKISTAMAKHVLQDA 196


>gi|298505194|gb|ADI83917.1| DnaA regulatory inactivator Hda [Geobacter sulfurreducens KN400]
          Length = 242

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 25/240 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLA-- 81
            QL F FP     S D+ ++ +  E A R        S    ++ L GPSGSGK+ L   
Sbjct: 1   MQLVFDFPVTPKYSFDNFVICAGNETACRFARRLTDESGSENLLYLHGPSGSGKTHLLMA 60

Query: 82  --NIWSDKSR----------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
               ++ +                     +     S  +        +L++D+ L+    
Sbjct: 61  MGACFAGRVGLRAVPCISFKDVDEIYHGEYPAEEVSRLAERFRGAPALLVDDLHLIPDQQ 120

Query: 124 T---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
           +   +L+ + N  +Q    + +T    P         L SRL    V K  + DDD   +
Sbjct: 121 SVRVELWQLFNDFYQAGRPIAITGLNPPNELPTLDGHLTSRLLWGLVAKTDISDDDSRRR 180

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++ K+  DRQI +      Y++  + R +      +D +   A S    IT  LA E L 
Sbjct: 181 IMQKLADDRQIILPADAVDYLLVHVRRDVPSLVAALDAITRYAFSAKRKITMRLAREALA 240


>gi|104780562|ref|YP_607060.1| DNA replication initiation factor [Pseudomonas entomophila L48]
 gi|95109549|emb|CAK14250.1| conserved hypothetical protein; DnaA family protein [Pseudomonas
           entomophila L48]
          Length = 261

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 92/235 (39%), Gaps = 15/235 (6%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG 76
               K  QL          +  +       +A+    RL ++   W   ++ L G  G G
Sbjct: 25  PASMKPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVG 84

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DT 124
           ++ L    + + +      +   L  +L         ++  + V ++D+ ++      + 
Sbjct: 85  RTHLLQAATHRFQQLGEPAVYLPLAQLLERGVELLDHLEQYELVCIDDLHVIAGKADWEE 144

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
            +FH+ N +      LL+ A + P    + L DL SRL  A + ++    D+   + +  
Sbjct: 145 AMFHLFNRLRDSGRRLLLAASSSPRELPIKLADLKSRLTLALIFQMRGMSDEDKLRALQL 204

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             + R + +  ++  +I+ R  RS+     L++++D  +L     +T     E L
Sbjct: 205 RASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETL 259


>gi|229591907|ref|YP_002874026.1| DNA replication initiation factor [Pseudomonas fluorescens SBW25]
 gi|229363773|emb|CAY51191.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 234

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL          +  +       +A+    RL ++   W   ++ L G  G G++ L
Sbjct: 2   KPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKHGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  ++         ++  + V L+D+  +      +  LFH
Sbjct: 62  LQAACLRFEQMGEPAVYLPLAELMDRGIGIFDHLEQYELVCLDDLQAIAGKADWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A + P    + L DL SRL  A + ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAASSSPRELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R  RS+     L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFDLLEQLDQASLQAQRKLTIPFLKETL 232


>gi|330811200|ref|YP_004355662.1| DNA replication initiation factor [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379308|gb|AEA70658.1| Putative DNA replication initiation factor [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 234

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL          +  +       +A+    RL ++   W   ++ L G  G G++ L
Sbjct: 2   KPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  +L         ++  + V L+D+  +      +  LFH
Sbjct: 62  LQAACLRFEQLGEPAVYLPLAELLDRGVEILDNLEQYELVCLDDLQAVAGKADWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A T P    V L DL SRL  A + ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAASTSPRELPVKLADLKSRLTLALIFQMRPLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R  RS+    +L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFELLERLDQASLQAQRKLTIPFLKETL 232


>gi|70731783|ref|YP_261525.1| DNA replication initiation factor [Pseudomonas fluorescens Pf-5]
 gi|68346082|gb|AAY93688.1| DnaA family protein [Pseudomonas fluorescens Pf-5]
          Length = 234

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL          +  +       +A+    RL ++   W   ++ L G  G G++ L
Sbjct: 2   KPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  +L         ++  + V L+D+  +      +  LFH
Sbjct: 62  LQAACLRFEQLGEPAVYLPLAELLDRGIEILDNLEQYELVCLDDLQAVAGKADWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A T P    V L DL SRL  A + ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAASTSPRELPVKLADLKSRLTLALIFQMRPLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R  RS+    +L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFELLERLDQASLQAQRKLTIPFLKETL 232


>gi|325274455|ref|ZP_08140535.1| DNA replication initiation factor [Pseudomonas sp. TJI-51]
 gi|324100409|gb|EGB98175.1| DNA replication initiation factor [Pseudomonas sp. TJI-51]
          Length = 235

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
               QL          +  +       +A+    RL ++   W   ++ L G  G G+S 
Sbjct: 2   KPPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVGRSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127
           L    + + +      +   L  +L         +   + V ++D+ ++      +  +F
Sbjct: 62  LLQAATHRFQQRGEPAVYLPLAQLLERGVGLLDYLAQYELVCIDDLHVIAGKPDWEEAMF 121

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H+ N +      LL+ A   P    V LPDL SRL  A V ++    D+   + +    +
Sbjct: 122 HLFNRLRDSGRRLLLAASASPRELPVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R + +  ++  +I+ R  RS+     L++++D  +L     +T     E L
Sbjct: 182 RRGLHLTDEVGHFILTRGARSMSALFDLLERLDQASLQAQRKLTIPFLKETL 233


>gi|312962335|ref|ZP_07776826.1| DnaA family protein [Pseudomonas fluorescens WH6]
 gi|311283262|gb|EFQ61852.1| DnaA family protein [Pseudomonas fluorescens WH6]
          Length = 234

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL          +  +       +A+    RL ++   W   ++ L G  G G++ L
Sbjct: 2   KPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  ++         ++  + V L+D+  +      +  LFH
Sbjct: 62  LQAACLRFEQMGEPAVYLPLAELMDRGIGIFDHLEQYELVCLDDLQAIAGKADWEEALFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A T P    + L DL SRL  A + ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAAATSPRELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R  RS+     L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFDLLEQLDQASLQAQRKLTIPFLKETL 232


>gi|167032278|ref|YP_001667509.1| DNA replication initiation factor [Pseudomonas putida GB-1]
 gi|166858766|gb|ABY97173.1| DnaA regulatory inactivator Hda [Pseudomonas putida GB-1]
          Length = 235

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
               QL          +  +       +A+    RL ++   W   ++ L G  G G+S 
Sbjct: 2   KPPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVGRSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127
           L    + + +      +   L  +L         +   + V ++D+ ++      +  +F
Sbjct: 62  LLQAATHRFQQRGEPAVYLPLAQLLDRGVGLLDYLAQYELVCIDDLHVIAGKADWEEAMF 121

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H+ N +      LL+ A   P    V LPDL SRL  A V ++    D+   + +    +
Sbjct: 122 HLFNRLRDSGRRLLLAASASPRELPVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R + +  ++  +I+ R  RS+     L++++D  +L     +T     E L
Sbjct: 182 RRGLHLTDEVGHFILTRGARSMSALFDLLERLDQASLQAQRKLTIPFLKETL 233


>gi|49081928|gb|AAT50364.1| PA0947 [synthetic construct]
          Length = 235

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL  S       +  +       +A+    RL ++   W   ++ L G  G G+S L
Sbjct: 2   KPIQLPLSVRLRDDATFANYYPGANAAALGYVERLCEAEAGWAESLIYLWGHDGVGRSHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        I   +   +         ++  + V ++D+D+L      +  LFH
Sbjct: 62  LQAACLRFEQFEERTIYLPMADPVQYGPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    V LPDL SRL  A + ++    D+   + +    + 
Sbjct: 122 LFNRLRDTGRRLLLAASKSPRELQVKLPDLKSRLTMALIFQLHGLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R  RS+     L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDEVGRFILNRGSRSMNSLFDLLEQLDRASLQAQRKLTIPFLKETL 232


>gi|58616915|ref|YP_196114.1| hypothetical protein ERGA_CDS_01880 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416527|emb|CAI27640.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 230

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 8/222 (3%)

Query: 26  EQLF-FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            QL  F        +  D ++     +   ++ +   W S   IL G SGSGK+ LA+IW
Sbjct: 1   MQLTLFDLEESYSYNYHDYILLEKNHETYNMLMN-QQWSS--FILYGKSGSGKTHLAHIW 57

Query: 85  SDKSRSTRFSNIAKSLD---SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
                +   ++   +       +I +    ++E+I+ +  N++   H  N I +    LL
Sbjct: 58  QKLKNAIFINHDLINTGKGIENVISSSNAFIIENIENIS-NESSTLHYYNYIKENKKILL 116

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT+   P      + DL SR+      K++ PD++ L+ +++K+F DRQI I+ K+  YI
Sbjct: 117 MTSSIAPRFLNYKIKDLKSRMLYTMNAKLANPDEELLKIMLIKLFVDRQIHIELKVINYI 176

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +   ERS      +V  +         G+T      ++ + +
Sbjct: 177 LNNTERSFQSLSNIVKCIYRELPYYNNGVTIPFVKSIIGKNE 218


>gi|57238925|ref|YP_180061.1| hypothetical protein Erum1920 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578857|ref|YP_197069.1| hypothetical protein ERWE_CDS_01930 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161004|emb|CAH57910.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417483|emb|CAI26687.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 230

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 8/222 (3%)

Query: 26  EQLF-FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            QL  F        +  D ++     +   ++ +   W S   IL G SGSGK+ LA+IW
Sbjct: 1   MQLTLFDLEESYSYNYHDYILLEKNHETYNMLMN-QQWSS--FILYGKSGSGKTHLAHIW 57

Query: 85  SDKSRSTRFSNIAKSLD---SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
                +   ++   +       +I +    ++E+I+ +  N++   H  N I +    LL
Sbjct: 58  QKLKNAIFINHDLINTGKGIENVISSSNAFIIENIENIS-NESSTLHYYNYIKENKKILL 116

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT+   P      + DL SR+      K++ PD++ L+ +++K+F DRQI I+ K+  YI
Sbjct: 117 MTSSIAPRFLNYKIKDLKSRMLYTMNAKLANPDEELLKIMLIKLFVDRQIHIELKVINYI 176

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +   ERS      +V  +         G+T      ++ + +
Sbjct: 177 LNNTERSFQSLSNIVKCIYRELPYYNNGVTIPFVKSIIGKNE 218


>gi|26988400|ref|NP_743825.1| DNA replication initiation factor [Pseudomonas putida KT2440]
 gi|148549256|ref|YP_001269358.1| DNA replication initiation factor [Pseudomonas putida F1]
 gi|24983155|gb|AAN67289.1|AE016355_7 DnaA family protein [Pseudomonas putida KT2440]
 gi|148513314|gb|ABQ80174.1| regulatory inactivation of DnaA Hda protein [Pseudomonas putida F1]
 gi|313500166|gb|ADR61532.1| DNA replication initiation factor [Pseudomonas putida BIRD-1]
          Length = 235

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 90/232 (38%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
               QL          +  +       +A+    RL ++   W   ++ L G  G G+S 
Sbjct: 2   KPPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVGRSH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127
           L    + + +      +   L  +L         +   + V ++D+ ++      +  +F
Sbjct: 62  LLQAATHRFQQRGEPAVYLPLAQLLDRGVELLDYLAQYELVCIDDLHVIAGKADWEEAMF 121

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H+ N +      LL+ A   P    + LPDL SRL  A V ++    D+   + +    +
Sbjct: 122 HLFNRLRDSGRRLLLAASASPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R + +  ++  +I+ R  RS+     L++++D  +L     +T     E L
Sbjct: 182 RRGLHLTDEVGHFILTRGARSMSALFDLLERLDQASLQAQRKLTIPFLKETL 233


>gi|77457863|ref|YP_347368.1| DNA replication initiation factor [Pseudomonas fluorescens Pf0-1]
 gi|77381866|gb|ABA73379.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 234

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL          +  +       +A+    RL ++   W   ++ L G  G G++ L
Sbjct: 2   KPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKHGVGRTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        +   L  ++         ++  + V L+D+ ++      +  +FH
Sbjct: 62  LQAACLRFEQMGEPAVYLPLAELMDRGIEILDNLEQYELVCLDDLQVIAGKADWEEAMFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A T P    + L DL SRL  A + ++    D+   + +    + 
Sbjct: 122 LFNRLRDSGRRLLIAASTSPRELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R  RS+     L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFDLLEQLDQASLQAQRKLTIPFLKETL 232


>gi|300114434|ref|YP_003761009.1| DnaA regulatory inactivator Hda [Nitrosococcus watsonii C-113]
 gi|299540371|gb|ADJ28688.1| DnaA regulatory inactivator Hda [Nitrosococcus watsonii C-113]
          Length = 232

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 13/227 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA--- 81
           +QL          S ++  + +A  + +  ++        R + L GPSG GK+ L    
Sbjct: 4   QQLPLPIGESGAPSFENYYLAAANREPIAAVERCGQGKGERFLCLWGPSGVGKTHLLLAA 63

Query: 82  -NIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDF---NDTQLFHIINS 132
             I + +S    +  + +           ++    V ++DID +      +  L H+ N 
Sbjct: 64  CQIAAQESERVAYVPLKRVGIMAPEILGGLEAAAFVAIDDIDHVAGYRHWEESLLHLYNL 123

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    LL+ +   P +    LPDL SRL      ++   DD      +    A R + 
Sbjct: 124 LQEEQGRLLLASTDKPSTLHWLLPDLRSRLGWGVGYQLQPLDDHQKHAALQFQAAKRGLE 183

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +  ++A ++++  ER +     ++ +++  +++    +T     +VL
Sbjct: 184 LPDEVAGFLLRHSERDMHSLSSILAQLERASMAAQRRLTVPFVRQVL 230


>gi|152987343|ref|YP_001349911.1| DNA replication initiation factor [Pseudomonas aeruginosa PA7]
 gi|150962501|gb|ABR84526.1| DnaA regulatory inactivator Hda [Pseudomonas aeruginosa PA7]
          Length = 234

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL  S       +  +       +A+    RL ++   W   ++ L G  G G+S L
Sbjct: 2   KPIQLPLSVRLRDDATFANYYPGANAAALGYVERLCEAEAGWAESLIYLWGHDGVGRSHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        I   +  ++         ++  + V ++D+D+L      +  LFH
Sbjct: 62  LQAACLRFEQFEERTIYLPMADLVQYGPEIFDDLEQCELVCIDDLDVLVGKRNWEEGLFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    V LPDL SRL  A + ++    D+   + +    + 
Sbjct: 122 LFNRLRDTGRRLLLAASKSPRELQVKLPDLKSRLTMALIFQLHGLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R  RS+     L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDEVGRFILNRGSRSMNSLFDLLEQLDRASLQAQRKLTIPFLKETL 232


>gi|15596144|ref|NP_249638.1| DNA replication initiation factor [Pseudomonas aeruginosa PAO1]
 gi|116048871|ref|YP_792328.1| DNA replication initiation factor [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893083|ref|YP_002441952.1| DNA replication initiation factor [Pseudomonas aeruginosa LESB58]
 gi|254239298|ref|ZP_04932621.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254245231|ref|ZP_04938553.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296390698|ref|ZP_06880173.1| DNA replication initiation factor [Pseudomonas aeruginosa PAb1]
 gi|9946853|gb|AAG04336.1|AE004529_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115584092|gb|ABJ10107.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171229|gb|EAZ56740.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126198609|gb|EAZ62672.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218773311|emb|CAW29123.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 234

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           K  QL  S       +  +       +A+    RL ++   W   ++ L G  G G+S L
Sbjct: 2   KPIQLPLSVRLRDDATFANYYPGANAAALGYVERLCEAEAGWAESLIYLWGHDGVGRSHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                 +        I   +  ++         ++  + V ++D+D+L      +  LFH
Sbjct: 62  LQAACLRFEQFEERTIYLPMADLVQYGPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFH 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    V LPDL SRL  A + ++    D+   + +    + 
Sbjct: 122 LFNRLRDTGRRLLLAASKSPRELQVKLPDLKSRLTMALIFQLHGLSDEDKLRALQLRASR 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++  +I+ R  RS+     L++++D  +L     +T     E L
Sbjct: 182 RGLHLTDEVGRFILNRGSRSMNSLFDLLEQLDRASLQAQRKLTIPFLKETL 232


>gi|330902626|gb|EGH33641.1| DNA replication initiation factor [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 207

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 12/205 (5%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-- 104
           +A+    RL ++   W   ++ L G  G G++ L      +        +   L  ++  
Sbjct: 1   AAVGYVERLCEADAGWAESLIYLWGKDGVGRTHLLQAACLRFEQLGEPAVYLPLAEVIDE 60

Query: 105 -------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                  ++  + V L+D+  +      +  LFH+ N +      LL+ A   P    V 
Sbjct: 61  GIELFDHLEQYELVCLDDLQAIVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPRELPVK 120

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           LPDL SRL  A V ++    D+   + +    + R + +   +  +I+ R  RS+    +
Sbjct: 121 LPDLKSRLTMALVFQMRGLSDEDKLRALQLRASRRGLHLTDDVGHFILTRGTRSMSALFE 180

Query: 215 LVDKMDNLALSRGMGITRSLAAEVL 239
           L++++D  +L     +T     E L
Sbjct: 181 LLERLDQASLQEKRKLTIPFLKETL 205


>gi|56551607|ref|YP_162446.1| DNA replication initiation ATPase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761267|ref|ZP_04759355.1| ATPase involved in DNA replication initiation [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752800|ref|YP_003225693.1| chromosomal replication initiator, DnaA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543181|gb|AAV89335.1| ATPase involved in DNA replication initiation [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241374174|gb|EER63671.1| ATPase involved in DNA replication initiation [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258552163|gb|ACV75109.1| chromosomal replication initiator, DnaA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 214

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 22/223 (9%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
              Q+          +  D +V  A   AV  +  W  WP +  +L G   SG+S L  +
Sbjct: 6   PVTQMALPLIWPEPENDGDFIVSDANNIAVEQLRLWQKWPVKSALLTGMRKSGRSLLGRL 65

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
           +  ++      N  +                       ++  +FH  N   +    LL+ 
Sbjct: 66  FVARTGGELIDNAERR----------------------SEEFIFHAWNRAERLKRPLLVI 103

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           A   P  W + LPDL SR+ A+  + I  PDD  +  +I +    R + +  ++  ++  
Sbjct: 104 ADQPPPLWKIRLPDLRSRMIASPHLVIKAPDDSLIAALIERRLGRRGLPVSTEILEWVTP 163

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           R+E + +     +DK+D  AL R   IT ++   ++   +  D
Sbjct: 164 RIEHNYIAVLDWIDKLDQAALKRRGPITLNMVRAIMAGEEIPD 206


>gi|332184913|ref|ZP_08386662.1| hypothetical protein SUS17_294 [Sphingomonas sp. S17]
 gi|332014637|gb|EGI56693.1| hypothetical protein SUS17_294 [Sphingomonas sp. S17]
          Length = 202

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 24/212 (11%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
           L   +P       D  L+  +   A R+++ W SWP+   IL GP  SG+S LA I++ +
Sbjct: 6   LPLQWPADPR--SDAFLLTDSNRLAARMLEQWESWPTMAAILTGPRKSGRSLLARIFAAR 63

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147
           S  T                    +++D + +   + Q+FH  N+       LL+ A   
Sbjct: 64  SNGT--------------------IIDDAERV--PEVQIFHAWNTAQAERRPLLIVADAP 101

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P  W V LPDL SRL  +++ +I  PDD+ +  +   +F  R +     L  ++  R+ER
Sbjct: 102 PPRWSVKLPDLRSRLANSSLAEIGAPDDELVAALFEHLFERRGLDARPDLIEWLTARVER 161

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           S +   + VD +D  A+ R   ++ +LA   L
Sbjct: 162 SHLSVIRAVDMLDQGAMERRARLSIALARSTL 193


>gi|254786961|ref|YP_003074390.1| DnaA regulatory inactivator Hda [Teredinibacter turnerae T7901]
 gi|237687481|gb|ACR14745.1| DnaA regulatory inactivator Hda [Teredinibacter turnerae T7901]
          Length = 236

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 15/232 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLL-VHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLA 81
           + +QL          +  + L V S   QAV  ++   S  S     + G  G+G S L 
Sbjct: 4   QPQQLSLGIALHEEATFANYLAVGSGNRQAVDALEKVASGASLENTFVWGAHGTGLSHLL 63

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFN-----------DTQLFH 128
                ++     S     +  +       +   LED+DL+  +           +  LFH
Sbjct: 64  QAVCHQASDCGRSLQYFPMADVRGYAPAALCEGLEDLDLVCLDGIEHICGSREWEQSLFH 123

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +     +L+ ++   P +  + LPDL SRL +  +  +    DD  +  + +   +
Sbjct: 124 LFNRMRDAGKTLVFSSHVSPAALPIVLPDLKSRLMSCIIYHLESLTDDAKKAALQQRAHE 183

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R   + +++A++I+ R  R      +L+DK+D+ +L     +T      VL+
Sbjct: 184 RGFDMPEEVASFILNRASRDTAELFELLDKLDDASLQAQRKLTIPFVKSVLE 235


>gi|146283163|ref|YP_001173316.1| DNA replication initiation factor [Pseudomonas stutzeri A1501]
 gi|145571368|gb|ABP80474.1| DnaA family protein [Pseudomonas stutzeri A1501]
          Length = 223

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 12/206 (5%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL- 104
            +A+    RL      W   ++ L G  G G+S L      +        +   L  +  
Sbjct: 16  AAALGYVERLCSPAAGWSDELIYLWGQRGVGRSHLLQAACLRVEERGELAVYLPLAEVAE 75

Query: 105 --------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                   ++  + V L+D+D +  +   +  LFH+ N +      LL+ A   P    +
Sbjct: 76  YGPALLDNLEQSELVCLDDLDAVAGDAIWEEALFHLFNRLRDAGRRLLLAADASPRELAI 135

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            LPDL SRL  A V ++    D+   + +    + R + +   +  +I+ R  RS+    
Sbjct: 136 KLPDLQSRLSLALVFQLQQLSDEDKLRALQLRASRRGLNLPDDVGRFILTRGSRSMNALF 195

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVL 239
           +L+D++D  +L     +T     E L
Sbjct: 196 ELLDQLDQASLQAQRKLTIPFLKETL 221


>gi|88608364|ref|YP_506085.1| hypothetical protein NSE_0190 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600533|gb|ABD46001.1| conserved hypothetical protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 223

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 10/213 (4%)

Query: 26  EQLFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
            QL    +  R    S  D  V  +     + +   P +  + ++L G S SGK+ +  +
Sbjct: 2   RQLILIDNQIRQNTYSAADYFVSESNLSIYKSLVETP-FSQKPIVLKGHSKSGKTHIGRV 60

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLL 141
           W+ K  +   SN+ +     +        ++DID L   +    L HI N   +    LL
Sbjct: 61  WASKHGADILSNLTEQTHFAI---HNHCFIDDIDKLTTQEEIEALLHIYNGAIESGKILL 117

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           MT R+    +   LPDL SRL+++    I  PDD+ L  VI K F   Q  + +K+   +
Sbjct: 118 MTTRSL--DFSDVLPDLSSRLRSSITYSIPPPDDELLRVVIRKQFYLYQTRVSEKIVDLV 175

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           +QR++RSL      V  ++  AL +G  I+  L
Sbjct: 176 LQRVDRSLEAVVDFVALLNREALHKGKPISARL 208


>gi|77164694|ref|YP_343219.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           oceani ATCC 19707]
 gi|254434656|ref|ZP_05048164.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           oceani AFC27]
 gi|76883008|gb|ABA57689.1| regulatory inactivation of DnaA Hda protein [Nitrosococcus oceani
           ATCC 19707]
 gi|207090989|gb|EDZ68260.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           oceani AFC27]
          Length = 232

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 94/228 (41%), Gaps = 13/228 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLA--- 81
           +QL          S ++  + +A  ++V  ++        R + L GPSG GK+ L    
Sbjct: 4   QQLPLPIGDSGAPSFENYYLAAANRESVAAVERCGQGKGDRFLCLRGPSGVGKTHLLLAA 63

Query: 82  -NIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDF---NDTQLFHIINS 132
             I + K     +  + +++         ++    V ++DID +      +  L H+ N 
Sbjct: 64  CQIAAQKGERVAYVPLKRAVIMAPEILGGLEVAAFVAIDDIDHIAGYRHWEESLLHLYNL 123

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    LL+ +   P +    LPDL SRL      ++   DD      +    A R + 
Sbjct: 124 LQEGRGRLLLASTDKPSTLHWLLPDLRSRLGWGLGYQLQPLDDHQKHAALQFQAAKRGLE 183

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +  ++A ++++  ER +     ++ +++  +++    +T     +VL 
Sbjct: 184 LPDEVAGFLLRHSERDMHSLSSILAQLERASMAAQRRLTVPFVRQVLD 231


>gi|107100403|ref|ZP_01364321.1| hypothetical protein PaerPA_01001428 [Pseudomonas aeruginosa PACS2]
 gi|313105833|ref|ZP_07792096.1| hypothetical protein PA39016_000110130 [Pseudomonas aeruginosa
           39016]
 gi|310878598|gb|EFQ37192.1| hypothetical protein PA39016_000110130 [Pseudomonas aeruginosa
           39016]
          Length = 225

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 12/206 (5%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL- 104
            +A+    RL ++   W   ++ L G  G G+S L      +        I   +  ++ 
Sbjct: 18  AAALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLLQAACLRFEQFEERTIYLPMADLVQ 77

Query: 105 --------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                   ++  + V ++D+D+L      +  LFH+ N +      LL+ A   P    V
Sbjct: 78  YGPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFHLFNRLRDTGRRLLLAASKSPRELQV 137

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            LPDL SRL  A + ++    D+   + +    + R + +  ++  +I+ R  RS+    
Sbjct: 138 KLPDLKSRLTMALIFQLHGLSDEDKLRALQLRASRRGLHLTDEVGRFILNRGSRSMNSLF 197

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVL 239
            L++++D  +L     +T     E L
Sbjct: 198 DLLEQLDRASLQAQRKLTIPFLKETL 223


>gi|295689652|ref|YP_003593345.1| chromosomal replication initiator DnaA [Caulobacter segnis ATCC
           21756]
 gi|295431555|gb|ADG10727.1| Chromosomal replication initiator DnaA [Caulobacter segnis ATCC
           21756]
          Length = 229

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 4/226 (1%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             Q           +R+D  V  +   AV  +++WP+WP   + L+GP+G GK+ LA  W
Sbjct: 2   STQFRLPLTAAPTYAREDFAVSPSNADAVARVEAWPAWPEGRLALIGPAGVGKTHLARAW 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL----LDFNDTQLFHIINSIHQYDSSL 140
           +    +            +     K +L+ED D        +D  LFHI+N       ++
Sbjct: 62  AAAHDAVVVEATGDDAPDLPALRGKAILVEDADRRAEGTALSDEALFHILNMAGVDGGTV 121

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+T R  PV W   +PDL SRL A  V  I  PDD  LE V+ + F  R +  D  L  Y
Sbjct: 122 LLTGRAAPVGWAANVPDLRSRLNALCVASIEAPDDVVLEAVLRRAFEHRLLKPDPDLYPY 181

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           ++ R+ RS   A    D +D  A      + ++LA EVL + +  +
Sbjct: 182 LLLRLPRSAAEAIAAADLLDEAAAQMRRELNKALAREVLGDFEGDE 227


>gi|330813923|ref|YP_004358162.1| chromosomal replication initiator protein DnaA [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487018|gb|AEA81423.1| chromosomal replication initiator protein DnaA [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 208

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 97/207 (46%), Gaps = 2/207 (0%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQ  F+         +D  +  + +     +  WP+W   ++ + GP  SGK+ L  ++ 
Sbjct: 3   EQQIFNLSTEEYFFEEDFCISQSNQDVCNYLRKWPNWDDNIINIFGPKKSGKTFLLTVFE 62

Query: 86  DKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144
            K+   R S    + +++    ++  +++ED++  + ++  LF + N     +  L+ ++
Sbjct: 63  RKNSFFRISANTLNKETVSSALSQDRLIIEDVEE-NTDEELLFLLFNEFKNNNKYLIFSS 121

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
                     L DL SR K+   ++IS P D  L  V++K  +++QI I K+L  + ++R
Sbjct: 122 TQDSSRISFQLQDLSSRFKSMLNLEISNPSDTLLCSVLMKQLSEKQITIKKELITHTIKR 181

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGIT 231
           +ERS     K    +D  +L     +T
Sbjct: 182 IERSYDSVNKFSVMIDEESLKNKKKLT 208


>gi|270158123|ref|ZP_06186780.1| DnaA regulatory inactivator Hda [Legionella longbeachae D-4968]
 gi|289163612|ref|YP_003453750.1| ATPase regulatory factor involved in DnaA inactivation [Legionella
           longbeachae NSW150]
 gi|269990148|gb|EEZ96402.1| DnaA regulatory inactivator Hda [Legionella longbeachae D-4968]
 gi|288856785|emb|CBJ10596.1| ATPase regulatory factor involved in DnaA inactivation [Legionella
           longbeachae NSW150]
          Length = 230

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 99/228 (43%), Gaps = 14/228 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLANIW 84
           +QL  +       S +D    +      + +++      +R++ L G SGSGKS L    
Sbjct: 3   KQLALAIKLNEQASLEDFNWGN-NRLLQQQLENMLHYRENRLLYLWGVSGSGKSHLLQAC 61

Query: 85  SDK---SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFHIINSI 133
             +   ++S  +  +A   +        I+ +  + ++DI ++  +   +  LFH+ N +
Sbjct: 62  CQEVNLTQSAIYLPLALLKEWGPQTIEGIEDQTLICIDDIHIIATDSIWEEALFHLYNKV 121

Query: 134 HQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
              + ++L+ +    P +  + LPDL SRL    V+++   DD      +      R   
Sbjct: 122 KDSERNILIISGNQSPATIPIKLPDLRSRLSWGLVIQLMELDDQDKINTLKHHALKRGFD 181

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +   +  +++ R  R++     +++++D+ +L+    IT     ++L 
Sbjct: 182 LPDSVGQFLLNRCSRNMHDLHHILNRLDDASLAAQRKITIPFVKDILN 229


>gi|292491000|ref|YP_003526439.1| DnaA regulatory inactivator Hda [Nitrosococcus halophilus Nc4]
 gi|291579595|gb|ADE14052.1| DnaA regulatory inactivator Hda [Nitrosococcus halophilus Nc4]
          Length = 235

 Score =  174 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 13/227 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLANIW 84
           +QL          S ++  +  +  + V  ++        R + L GPSG GK+ L    
Sbjct: 4   QQLPLPIGEYGAPSFENYYLADSNRELVAAVERCGQGEGERFLYLWGPSGVGKTHLLLAA 63

Query: 85  S-------DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIINS 132
                   ++         A     IL  ++    V ++DID +      +  L H+ N 
Sbjct: 64  CQAAAQRGERVAYVPLKRAAIMAPEILRGLEAAALVAIDDIDRIAGCRYWEESLLHLYNL 123

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
             +  S LL+ +   P +  + LPDL SRL    V ++   DD      +    A R + 
Sbjct: 124 SREGPSQLLLASSKKPGALPLLLPDLRSRLGWGLVYQLQPLDDHQKHAALKLQAAKRGME 183

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +  ++AA++++  +R +     L+ +++  +++    +T   A +VL
Sbjct: 184 LPDEVAAFLLRHSDRDMHSLSDLLAQLERASMAAQRRLTIPFARQVL 230


>gi|89095234|ref|ZP_01168156.1| DnaA family protein [Oceanospirillum sp. MED92]
 gi|89080488|gb|EAR59738.1| DnaA family protein [Oceanospirillum sp. MED92]
          Length = 234

 Score =  174 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 14/229 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81
           N   Q+  S         ++       E     + +       +   + G  G G + L 
Sbjct: 4   NHPFQIPLSVSLRDDARFENFY-AQGNELVCATLKAAAQGTGEQFTFIWGNEGVGCTHLL 62

Query: 82  NIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFN---DTQLFHI 129
                ++     S     LD +          ++    V L+ +  +  +   +  LFH 
Sbjct: 63  QAICHEAEPLGRSAAYLPLDELKHMGSGILEGMEFLDLVCLDAVQSVAGDRDWEVALFHF 122

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N I +  ++L++ + + P   G+ LPDL SRL    V ++    DD   K I    + R
Sbjct: 123 FNRIREQGNTLVIASTSAPRYLGISLPDLASRLSWGMVFQVQPLSDDTKLKAIQMRASAR 182

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
            +    ++A +++    R++     L+D +D  +LS    +T     EV
Sbjct: 183 GLEFSDEVARFLLHHASRNMNDLTSLLDTLDQASLSAKRKVTIPFIKEV 231


>gi|254492445|ref|ZP_05105617.1| chromosomal replication initiator protein DnaA [Methylophaga
           thiooxidans DMS010]
 gi|224462337|gb|EEF78614.1| chromosomal replication initiator protein DnaA [Methylophaga
           thiooxydans DMS010]
          Length = 234

 Score =  174 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 16/228 (7%)

Query: 27  QLFFSFPRCLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           QL            D+ L      E+A+       +     + L G +G+GK+ L    +
Sbjct: 7   QLTLRLSPQEIYHFDNYLFAKTETERALESFCRLDN--LDFLYLYGETGTGKTHLLIACA 64

Query: 86  DKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132
           +K +   F  I  SL  ++          ++    + L+D++ +  N   +  LFH  N 
Sbjct: 65  EKVQKLGFRVIYLSLAELIQTSEPAVLQSLEQADLLCLDDLEAVAGNKEWEVALFHCFNR 124

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           +H    SLL++A   P +  + LPDLCSRL    V +++   D+  ++ ++     R + 
Sbjct: 125 LHDAKGSLLVSAEHNPANSQIQLPDLCSRLATGLVYQLTTMSDEQKQQALILQSQKRGLT 184

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++  +A Y+++   R +     ++ ++D  +L     +T     +VL 
Sbjct: 185 MNDDVAQYLLRHYGRDMPALMSVLQQLDKASLQAKRKLTIPFIRQVLA 232


>gi|34499069|ref|NP_903284.1| DnaA regulatory inactivator Hda [Chromobacterium violaceum ATCC
           12472]
 gi|34104919|gb|AAQ61276.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 224

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 10/223 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL          + D+ L      + +  + +      R + L G  G GK+ L   W 
Sbjct: 2   DQLVLDLTPTPLPAFDNFL-AERNREVITALTATEG--ERFIYLWGEPGCGKTHLLQAWI 58

Query: 86  DKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYD-SS 139
             +    R+  + +               + ++ +D L  +D   LF   NS+ +     
Sbjct: 59  AHAERLGRAAIYLDGKGDHLPDFAREASFIAVDHVDDLAPDDQIMLFSFYNSLKEGGEGR 118

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LLM  R  PV+  V   DL +RL    V+++    DD     +    A+RQ+ I   +  
Sbjct: 119 LLMAGRKPPVALSVR-DDLRTRLGWGLVLEVKALSDDDKLAALRSHAANRQLSIPDDVYR 177

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           Y++    R L     ++D +D  +L+    IT  L   VL+  
Sbjct: 178 YLLTHWRRDLTSLISMIDMLDRYSLALRRPITVPLVKNVLQTA 220


>gi|91792999|ref|YP_562650.1| DNA replication initiation factor [Shewanella denitrificans OS217]
 gi|91715001|gb|ABE54927.1| regulatory inactivation of DnaA Hda protein [Shewanella
           denitrificans OS217]
          Length = 236

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 95/235 (40%), Gaps = 18/235 (7%)

Query: 22  KNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKS 78
           +N   QL      P             S  ++ ++ + +      S  + + GP  SG++
Sbjct: 3   QNSPRQLSLPVYLPDDETFQS--YYPASGNDELIQKLQASAQGGLSSSLYIYGPVKSGRT 60

Query: 79  CLANIWSDKSRS---------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQL 126
            L +     +                         +++ + + ++DID +  +   +  +
Sbjct: 61  HLMHAACALANDKDRRTLYIPLGIHASISPALFEGLESLELICIDDIDAIAGHPIWEEAI 120

Query: 127 FHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           FH+ N I ++ D  L+++ +  P   G  LPDL SR++   + ++    DD     + + 
Sbjct: 121 FHLYNRIAEHKDCHLIVSGKASPTEAGFLLPDLVSRMQWGLIYQLQPMADDEKLLALQRR 180

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            A R + +  ++  +++ RM R L     ++DK+D  ++     +T     E+L+
Sbjct: 181 AAMRGLQLSDEVGRFLLTRMARDLRTLFDVLDKLDKASMVHQRKLTIPFIKEMLR 235


>gi|52842998|ref|YP_096797.1| DnaA-like family protein [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52630109|gb|AAU28850.1| DnaA-like family protein [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 245

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL  +       + DD    +      +LI+       R++ L GP GSGKS L     
Sbjct: 18  KQLALAIKLNDEATLDDFNWGNNTLLQQQLIEMLSFKADRLLYLWGPKGSGKSHLLQACC 77

Query: 86  DK---SRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134
                ++S  +  +A            ++ +  + ++DI+ +  +   +  LFH+ N I 
Sbjct: 78  QAINLTQSAIYLPLAFLKEWGPQSIEGLEDQTLICIDDINTIANDSAWEEALFHLYNKIK 137

Query: 135 QYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
             + SLL+ +    P+   + L DL SRL    V++++  +DD     +    A R   +
Sbjct: 138 DSERSLLIISGNQPPIKCDIKLADLRSRLSWGLVIQLNELNDDEKINTLKMRAAKRGFEL 197

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            + +  +++ R  R++    ++++++D+ +      IT      +LK
Sbjct: 198 PESVGHFLLNRCSRNMHDLYEILNQLDDASWEAHRKITIPFVKNILK 244


>gi|119472478|ref|ZP_01614577.1| putative regulatory factor involved in inactivation of DnaA
           [Alteromonadales bacterium TW-7]
 gi|119444915|gb|EAW26214.1| putative regulatory factor involved in inactivation of DnaA
           [Alteromonadales bacterium TW-7]
          Length = 241

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 98/236 (41%), Gaps = 22/236 (9%)

Query: 23  NKEEQLFFS--FPRCLGI----SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG 76
           ++  Q+      P           +D L  + ++ +   + +      +   L G   SG
Sbjct: 9   HEPMQMALPVTLPDDETFASYFGGEDSLEVNHLKASFSELAN----SFQYTYLCGLGDSG 64

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DT 124
           KS L      K++    SN+  S+  ++         ++    + ++D+ L+  N   + 
Sbjct: 65  KSHLLYATCIKAQERGLSNMLLSMREVINFGPMVLDGLEALDVLCIDDVHLVAGNDAWEK 124

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
            LF+  N  ++    L++TA   P    + LPDL SRL   T  +I    DD   + +VK
Sbjct: 125 ALFNFFNRFNEPGKMLVVTADLLPNMLNISLPDLESRLTWGTTFQIRSMSDDDKAQALVK 184

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
               R + +  + A +++ R+ R +     ++DK+D+ +++    +T       LK
Sbjct: 185 RAHMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHASMAAQRKLTIPFIKSTLK 240


>gi|54295630|ref|YP_128045.1| hypothetical protein lpl2717 [Legionella pneumophila str. Lens]
 gi|53755462|emb|CAH16958.1| hypothetical protein lpl2717 [Legionella pneumophila str. Lens]
 gi|307611672|emb|CBX01364.1| hypothetical protein LPW_30571 [Legionella pneumophila 130b]
          Length = 230

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL  +       + DD    +      +LI+       R++ L GP GSGKS L     
Sbjct: 3   KQLALAIKLNDEATLDDFNWGNNTLLQQQLIEMLSFKADRLLYLWGPKGSGKSHLLQACC 62

Query: 86  DK---SRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134
                ++S  +  +A            ++ +  + ++DI+ +  +   +  LFH+ N I 
Sbjct: 63  QAINLTQSAIYLPLAFLKEWGPQSIEGLEDQTLICIDDINTIANDSTWEEALFHLYNKIK 122

Query: 135 QYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
             + SLL+ +    P+   + L DL SRL    V++++  +DD     +    A R   +
Sbjct: 123 DSERSLLIISGNQPPIKCDIKLADLRSRLSWGLVIQLNELNDDEKINTLKMRAAKRGFEL 182

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            + +  +++ R  R++    +L++++D+ +      IT      +LK
Sbjct: 183 PESVGHFLLNRCSRNMHDLYELLNRLDDASWEAHRKITIPFVKNILK 229


>gi|332534259|ref|ZP_08410104.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036339|gb|EGI72810.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 236

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 12/188 (6%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLED 115
           +   L G   SGKS L      K++    SN+  S+  ++         ++    + ++D
Sbjct: 48  QYTYLCGLGDSGKSHLLYATCIKAQERGLSNMLLSMREVIDFGPMVLDGLEALDVLCIDD 107

Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           + L+  N   +  LF+  N  ++    L++TA   P    + LPDL SRL   T  +I  
Sbjct: 108 VHLVAGNDAWEKALFNFFNRFNEPGKMLVVTADLLPSMLNISLPDLESRLTWGTTFQIRS 167

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
             DD   + +VK    R + +  + A +++ R+ R +     ++DK+D+ +++    +T 
Sbjct: 168 MSDDDKAQALVKRAHMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHASMAAQRKLTI 227

Query: 233 SLAAEVLK 240
                 LK
Sbjct: 228 PFIKSTLK 235


>gi|88812592|ref|ZP_01127840.1| hypothetical protein NB231_08610 [Nitrococcus mobilis Nb-231]
 gi|88790186|gb|EAR21305.1| hypothetical protein NB231_08610 [Nitrococcus mobilis Nb-231]
          Length = 244

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 14/232 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIW 84
            QL   F           +      +AV  ++       R V+ L G  G GKS L    
Sbjct: 13  RQLALDFQWDERFDFAGFVAGP-NAEAVAALELIGKGDRRRVIYLYGEPGVGKSHLLQAA 71

Query: 85  SDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132
             ++ +   + +   L  ++         ++    V L+D+D L          FH+ N 
Sbjct: 72  CGEASAWGRAVVYLPLRQLVNRSPRLLQELEGVDVVALDDLDCLTKAIEWQQAAFHLFNR 131

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           +      LLM     P   G+ LPDL SRL+   V+++    D+     + +    R + 
Sbjct: 132 LQDAGRELLMAGPRRPAKLGLALPDLVSRLQGVLVLRLEKLGDEDNVLALSRRAQRRGLE 191

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + K  A Y++    R   +  +L+DK D  +L     +T     +VL E   
Sbjct: 192 LPKATARYLLNHCRRDTGYFFQLLDKFDAASLQAQRRLTVPFVKKVLAEANN 243


>gi|209363740|ref|YP_001423690.2| DnaA-related protein [Coxiella burnetii Dugway 5J108-111]
 gi|207081673|gb|ABS77135.2| DnaA-related protein [Coxiella burnetii Dugway 5J108-111]
          Length = 260

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 80/239 (33%), Gaps = 11/239 (4%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP 72
           PD   +       +QL          +  +    + I     L +         + L G 
Sbjct: 13  PDNVNSSHSLTMIDQLPLRVQLREETTFANFYGGNNITLLKALNELLEGKGESFIYLWGE 72

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------DTRKPVLLEDIDLLDFN-- 122
              G++ L         +     +   L +  +        +++  + ++DID +     
Sbjct: 73  PSVGRTHLLQACCHTMNNRSLEAMYLPLKTPQLAPSILQGLESKPLICIDDIDAVLSQPD 132

Query: 123 -DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
            +  L H  N + +    L++     P      L DL SRL    V ++    D    K 
Sbjct: 133 WEEALLHFYNRVRESQVKLVIAGNYVPPQLNCQLADLRSRLSWGLVFQVIGLTDAEKIKA 192

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +     DR   +  ++  ++++   R +     L+DK+D  +L     +T     EVL 
Sbjct: 193 LQMRAHDRGFELSDEVGQFLLRHYPRDMSALFNLLDKLDQASLIAQRKLTVPFVKEVLN 251


>gi|148361114|ref|YP_001252321.1| DnaA-like family transporter protein [Legionella pneumophila str.
           Corby]
 gi|296108445|ref|YP_003620146.1| DnaA-like family protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148282887|gb|ABQ56975.1| DnaA-like family protein [Legionella pneumophila str. Corby]
 gi|295650347|gb|ADG26194.1| DnaA-like family protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 230

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL  +       + DD    +      +LI+       R++ L GP GSGKS L     
Sbjct: 3   KQLALAIKLNDEATLDDFNWGNNTLLQQQLIEMLSFKADRLLYLWGPKGSGKSHLLQACC 62

Query: 86  DK---SRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134
                ++S  +  +A            ++ +  + ++DI+ +  +   +  LFH+ N I 
Sbjct: 63  QAINLTQSAIYLPLAFLKEWGPQSIEGLEDQTLICIDDINTIANDSAWEEALFHLYNKIK 122

Query: 135 QYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
             + SLL+ +    P+   + L DL SRL    V++++  +DD     +    A R   +
Sbjct: 123 DSERSLLIISGNQPPIKCDIKLADLRSRLSWGLVIQLNELNDDEKINTLKMRAAKRGFEL 182

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            + +  +++ R  R++    +L++++D+ +      IT      +LK
Sbjct: 183 PESVGHFLLNRCSRNMHDLYELLNQLDDASWEAHRKITIPFVKNILK 229


>gi|148261518|ref|YP_001235645.1| ATPase involved in DNA replication initiation-like protein
           [Acidiphilium cryptum JF-5]
 gi|146403199|gb|ABQ31726.1| ATPase involved in DNA replication initiation-like protein
           [Acidiphilium cryptum JF-5]
          Length = 247

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 3/223 (1%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           +  Q+   F      +  D +  ++   A   + +   W +R ++L G +GSGKS LA I
Sbjct: 7   EPRQMALPFDEPERFALADFIEAASNAAARAALAAPGDWVNRRLVLWGEAGSGKSHLAWI 66

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
           W+ ++ +TR    A  L +       P+L+EDID           +     Q    +LMT
Sbjct: 67  WAARTCATRLD--AARLRTPASPGGAPLLIEDIDAAAAPLALFATLE-RATQAAVPVLMT 123

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
            RT P    V  PDL SRL+A+  ++I   + + L+ ++ ++ A RQ+ +   L  +++ 
Sbjct: 124 CRTPPARLPVEPPDLASRLRASLTIRIEPAEPELLDALLHRLAAARQMSLPPALHQFLLT 183

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           R+ R      + + ++D  AL+ G   +R LA  +L E    +
Sbjct: 184 RLPRRPAVLREAIARLDRYALALGTAPSRRLAERLLDELADPE 226


>gi|254496112|ref|ZP_05109011.1| DnaA-like family protein [Legionella drancourtii LLAP12]
 gi|254354653|gb|EET13289.1| DnaA-like family protein [Legionella drancourtii LLAP12]
          Length = 226

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 14/190 (7%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114
            R++ L G SGSGKS L          T+ S I   L+ +          ++ +  V ++
Sbjct: 37  DRLLYLWGASGSGKSHLLQASCQAVNLTQ-SAIYLPLNLLKEWGPQTIEGLEEQALVCID 95

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           DID +  +   +  LFH+ N I   D  LL+ +    P +  + LPDL SRL    V+++
Sbjct: 96  DIDAIAEDSAWEEALFHLYNKIKDLDKGLLIISGNQSPTTLAIKLPDLRSRLSWGLVIQL 155

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+     +      R   + + +  +++ R  R++   ++L++++D+ +L+    I
Sbjct: 156 MELSDEDKINTLKLHALRRGFDLPESVGQFLLNRCSRNMHDLQQLLNRLDDASLAAQRKI 215

Query: 231 TRSLAAEVLK 240
           T     E LK
Sbjct: 216 TIPFVKETLK 225


>gi|254294273|ref|YP_003060296.1| DNA replication ATPase [Hirschia baltica ATCC 49814]
 gi|254042804|gb|ACT59599.1| ATPase-like protein involved in DNA replication initiation
           [Hirschia baltica ATCC 49814]
          Length = 240

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 7/225 (3%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           K +QL   FP+      + L+   A E A   +  W  WP R + L+G +GSGK+ +   
Sbjct: 16  KSKQLVLDFPKLDA-DLEPLIATPASEDARLALSRWEYWPERQMCLIGSAGSGKTRMLRN 74

Query: 84  WSDKSRSTRFSNI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
           W+  + +   + +   A  +D I   + K +++++ D    N   L   +N      + L
Sbjct: 75  WAQDTGAAYVTGVDLSAAEIDEISGLSVKALVVDNADSCS-NGGSLLAAMNLCKSRGAFL 133

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L++  T P SW +   DL SRL A  VVK    D++ L+  +V     + + +  + A Y
Sbjct: 134 LLSGSTDPSSWNMKPLDLQSRLSALPVVKFGAIDEETLKIRLVSACKSKFMKLPDETADY 193

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +VQR+ R+ +  +++V+K+    ++ G  + R+ A + +   +Q 
Sbjct: 194 LVQRLARTYLVIDEIVEKL--ELVAAGKALNRTTARKAIAALEQS 236


>gi|88706615|ref|ZP_01104318.1| DnaA-like protein hda [Congregibacter litoralis KT71]
 gi|88699111|gb|EAQ96227.1| DnaA-like protein hda [Congregibacter litoralis KT71]
          Length = 234

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 97/229 (42%), Gaps = 11/229 (4%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
             + +  QL          + ++     ++   +  +    + P +   L G +G GKS 
Sbjct: 6   AAEEQSPQLALKIGLRDEATFENFCPRPSLAAVLDSMTRPAAEPLQF--LHGAAGEGKSH 63

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN---DTQLFHII 130
           L       +    +  +A+   +        ++T   + L++++ +  +   +  LFH++
Sbjct: 64  LLQALCHATAGALYLPLAELRGAHPGALLENLETAALLALDNLEHIAGDGEWEEALFHLM 123

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N        L + AR+  +  G+ LPDL SRL       ++  +D+ + +++      R 
Sbjct: 124 NRARAAQCPLWVAARSPAMDLGIELPDLRSRLGGGVTWAMTPANDEEMRRILQFRAERRG 183

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + +   +A+Y+  R  R+L      ++++DN +L R   +T  L  EV+
Sbjct: 184 LAMPDAVASYLCARETRALGDLMDTLNRLDNASLQRQRPLTVPLVREVM 232


>gi|226939439|ref|YP_002794512.1| DnaA regulatory inactivator Hda [Laribacter hongkongensis HLHK9]
 gi|226714365|gb|ACO73503.1| DnaA-related protein [Laribacter hongkongensis HLHK9]
          Length = 223

 Score =  171 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 9/224 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL          + D  +      Q +  +        R + L G +G GK+ L   W 
Sbjct: 2   DQLVLDLTPPPAPAFDHFI-AEHNRQIIAALTDAQG--ERFIYLWGAAGVGKTHLLQQWV 58

Query: 86  DKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSL 140
           + + +   + I     +  +       + V ++ +D L+ +D   LF I NS+   D  L
Sbjct: 59  EHANAVGRAAIYLDARAEKLPDFAREARCVAVDHVDELEPDDQITLFSIFNSLRDSDGQL 118

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L   R  P    +   DL +RL    V ++    D      + +    R + + + +  +
Sbjct: 119 LTAGREPPQRLKLR-DDLRTRLGWGLVFQVQAMSDADKLAALRRHAQMRLVNVPEDVLRW 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++    R +     +VD +D+ +L+    IT  L   +L+ ++Q
Sbjct: 178 LITHWRRDMASLVSMVDALDHYSLALQKPITVPLVKHILQTSRQ 221


>gi|54298784|ref|YP_125153.1| hypothetical protein lpp2848 [Legionella pneumophila str. Paris]
 gi|53752569|emb|CAH14001.1| hypothetical protein lpp2848 [Legionella pneumophila str. Paris]
          Length = 230

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL  +       + D+    + I    +LI+       R++ L GP GSGKS L     
Sbjct: 3   KQLALAIKLNDEATLDNFNWGNNILLQQQLIEMLSFKADRLLYLWGPKGSGKSHLLQACC 62

Query: 86  DK---SRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134
                ++S  +  +A            ++ +  + ++DI+ +  +   +  LFH+ N I 
Sbjct: 63  QAINLTQSAIYLPLAFLKEWGPQSIEGLEDQTLICIDDINTIANDSAWEEALFHLYNKIK 122

Query: 135 QYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
             + SLL+ +    P+   + L DL SRL    V++++  +DD     +    A R   +
Sbjct: 123 DSERSLLIISGNQPPIKCDIKLADLRSRLSWGLVIQLNELNDDEKINTLKMRAAKRGFEL 182

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            + +  +++ R  R++    +L++++D+ +      IT      +LK
Sbjct: 183 PESVGHFLLNRCSRNMHDLYELLNRLDDASWEAHRKITIPFVKNILK 229


>gi|189425233|ref|YP_001952410.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ]
 gi|189421492|gb|ACD95890.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ]
          Length = 229

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 7/221 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLANI 83
           +Q     P       ++ +  +    A+        P+ P +++ L GP+GSGK+ L + 
Sbjct: 2   QQQALDLPVTPRYGFENFISCAGNSTALEFSRRITDPAEPEKLLYLYGPAGSGKTHLLHA 61

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-----DTQLFHIINSIHQYDS 138
              +    ++  ++    ++ + T    LL   DL            L+   N  +    
Sbjct: 62  IGRQLAGEQYQVLSCRNLTVPVATNPGSLLLVDDLDQLPDRPELRNALWEAFNQQYSSGH 121

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           +L +  R  P         L SRL    V ++ + DD   + +I K+  DRQI +  ++A
Sbjct: 122 TLALAGRFAPKELPTIDDHLISRLLWGLVARLDVSDDRSRQMLIAKLAQDRQIILPDEVA 181

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++  + R +       D +   AL R   IT  LA E++
Sbjct: 182 GWLLTVLPRDVGSLVSACDALYRAALQRKCRITLRLARELV 222


>gi|120599138|ref|YP_963712.1| DNA replication initiation factor [Shewanella sp. W3-18-1]
 gi|120559231|gb|ABM25158.1| regulatory inactivation of DnaA Hda protein [Shewanella sp.
           W3-18-1]
          Length = 236

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 93/236 (39%), Gaps = 18/236 (7%)

Query: 21  PKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGK 77
           P N   QL      P     +       +  ++ ++ + +         + L GP  SG+
Sbjct: 2   PLNSPLQLSLPVYLPDDETFNS--YYPAAGNDELIQKLRANAEGSGEAAIYLWGPVKSGR 59

Query: 78  SCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQ 125
           + L +     +                   +     ++    V ++D+D +  +   +  
Sbjct: 60  THLMHAACAHANELDRRSFYIPLGIHASISTALLEGLEQLDLVCIDDVDAIAGHPIWEEA 119

Query: 126 LFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +F + N + ++ + +L+++  + P   G  LPDL SR++     ++    DD     + +
Sbjct: 120 IFDLYNRVAEHKNCALVVSGSSSPAEAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQR 179

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             A R + + + +  +++ RM R L     ++DK+D  +L     +T   A E+L 
Sbjct: 180 RAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235


>gi|170726517|ref|YP_001760543.1| DNA replication initiation factor [Shewanella woodyi ATCC 51908]
 gi|169811864|gb|ACA86448.1| DnaA regulatory inactivator Hda [Shewanella woodyi ATCC 51908]
          Length = 236

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 98/234 (41%), Gaps = 18/234 (7%)

Query: 23  NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSC 79
           N   QL      P     +       +  ++ ++ + +     S R V L GP  SG++ 
Sbjct: 4   NSPIQLSLPVHLPDDETFNS--YYPAAGNDELIQSLQACAEGSSERSVYLWGPVKSGRTH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127
           L +     +   + S+    L             +++   + ++D+D +  +   +  +F
Sbjct: 62  LMHAACAHANDLQRSSFYLPLGIHASISTALLEGLESLDLICIDDVDAIAGHPLWEEAIF 121

Query: 128 HIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            + N + ++ + SL+++A   P   G  LPDL SR++     ++    D+     + +  
Sbjct: 122 DLYNRVSEHKNCSLIVSASVSPNDSGFTLPDLISRMQWGLNYQLQPMADEEKLAALQRRA 181

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           A R + + + +  +++ R+ R L     ++D++D  +L     +T     E+L+
Sbjct: 182 AMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASLVHQRKLTIPFVKEMLR 235


>gi|315126230|ref|YP_004068233.1| regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas sp. SM9913]
 gi|315014744|gb|ADT68082.1| regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas sp. SM9913]
          Length = 228

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 12/188 (6%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLED 115
           +   L G   SGKS L      +++    SN+  S+  ++         ++    + ++D
Sbjct: 40  QYTYLCGLGDSGKSHLLYATCIQAQERGLSNMLLSMREVIHFGPMVLDGLEALDVLCIDD 99

Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           + L+  N   +  LF+  N  ++ +  L++TA   P    + LPDL SRLK  T  +I  
Sbjct: 100 VHLVAGNDAWEKALFNFFNRFNEPNKMLVVTADLLPNMLNISLPDLESRLKWGTTFQIRS 159

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
             DD   + +VK    R + +  + A +++ R+ R +     ++DK+D+ +++    +T 
Sbjct: 160 MSDDDKAQALVKRANMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHASMAAQRKLTI 219

Query: 233 SLAAEVLK 240
                 LK
Sbjct: 220 PFIKSTLK 227


>gi|114562926|ref|YP_750439.1| DNA replication initiation factor [Shewanella frigidimarina NCIMB
           400]
 gi|114334219|gb|ABI71601.1| regulatory inactivation of DnaA Hda protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 236

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 92/235 (39%), Gaps = 18/235 (7%)

Query: 22  KNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKS 78
           +N   QL      P             S  ++ ++ + +      +  + + GP  SG++
Sbjct: 3   QNSPRQLSLPVYLPDDETFQS--YYPASGNDELIQKLQASAEGNLASSLYVYGPEKSGRT 60

Query: 79  CLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQL 126
            L +     +                         +++ + + ++DI+ +  +   +  +
Sbjct: 61  HLMHAACALANDLERRTLYIPLGIHASISPALFEGLESLELICIDDIEAIAGHPVWEEAI 120

Query: 127 FHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           FH+ N I +     L++  +  P   G  LPDL SR++   + ++    DD     + + 
Sbjct: 121 FHLYNRIAEQQDCRLIVNGKASPSETGFLLPDLVSRMQWGLIYQLQPMADDEKLVALQRR 180

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            A R + +  ++  +++ RM R L     ++DK+D  ++     +T     E+L+
Sbjct: 181 AAMRGLQLSDEVGRFLLTRMARDLRTLFDVLDKLDKASMVHQRKLTIPFIKEMLR 235


>gi|126174013|ref|YP_001050162.1| DNA replication initiation factor [Shewanella baltica OS155]
 gi|153000304|ref|YP_001365985.1| DNA replication initiation factor [Shewanella baltica OS185]
 gi|160874938|ref|YP_001554254.1| DNA replication initiation factor [Shewanella baltica OS195]
 gi|217973665|ref|YP_002358416.1| DNA replication initiation factor [Shewanella baltica OS223]
 gi|304411437|ref|ZP_07393051.1| DnaA regulatory inactivator Hda [Shewanella baltica OS183]
 gi|307305241|ref|ZP_07584989.1| DnaA regulatory inactivator Hda [Shewanella baltica BA175]
 gi|125997218|gb|ABN61293.1| regulatory inactivation of DnaA Hda protein [Shewanella baltica
           OS155]
 gi|151364922|gb|ABS07922.1| Chromosomal replication initiator DnaA [Shewanella baltica OS185]
 gi|160860460|gb|ABX48994.1| DnaA regulatory inactivator Hda [Shewanella baltica OS195]
 gi|217498800|gb|ACK46993.1| DnaA regulatory inactivator Hda [Shewanella baltica OS223]
 gi|304350292|gb|EFM14696.1| DnaA regulatory inactivator Hda [Shewanella baltica OS183]
 gi|306911544|gb|EFN41969.1| DnaA regulatory inactivator Hda [Shewanella baltica BA175]
 gi|315267174|gb|ADT94027.1| DnaA regulatory inactivator Hda [Shewanella baltica OS678]
          Length = 236

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 93/236 (39%), Gaps = 18/236 (7%)

Query: 21  PKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGK 77
           P N   QL      P     +       +  ++ ++ + +         + L GP  SG+
Sbjct: 2   PLNSPLQLSLPVHLPDDETFNS--YYPAAGNDELIQKLRANAEGQGEAAIYLWGPVKSGR 59

Query: 78  SCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQ 125
           + L +     +                   +     ++    V ++D+D +  +   +  
Sbjct: 60  THLMHAACAHANEVERRSFYIPLGIHASISTALLEGLEQLDLVCIDDVDAIAGHPVWEEA 119

Query: 126 LFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +F + N + ++ + +L+++  + P   G  LPDL SR++     ++    DD     + +
Sbjct: 120 IFDLYNRVAEHKNCALVVSGSSSPADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQR 179

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             A R + + + +  +++ RM R L     ++DK+D  +L     +T   A E+L 
Sbjct: 180 RAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235


>gi|149186108|ref|ZP_01864422.1| ATPase [Erythrobacter sp. SD-21]
 gi|148830139|gb|EDL48576.1| ATPase [Erythrobacter sp. SD-21]
          Length = 203

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 24/220 (10%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           Q+              +++          + +   WP    IL GP+ SGKS  +  ++ 
Sbjct: 3   QIALPLSHSGPQEPSSIVLGEGNAHIAEALAASADWPFGTAILAGPARSGKSLFSRWFAS 62

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
            +                        ++D D    ++T++FH  N   +    LL+T   
Sbjct: 63  HTGGG--------------------AIDDADQ--KDETEIFHAWNRAREDGYPLLLTVDA 100

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
               W + LPDL SR+ AA  ++I  PDDD   ++++   A R + + +   AY++ RME
Sbjct: 101 --GGWEIALPDLRSRMGAALQLEIGAPDDDLAAELMLSHAAQRGLALGEGAPAYLIPRME 158

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           RS    E++V ++D L+L R    T S+  + L   Q  +
Sbjct: 159 RSHAAIERIVAEIDRLSLERKAPATMSIWRDALDAVQGPE 198


>gi|146292791|ref|YP_001183215.1| DNA replication initiation factor [Shewanella putrefaciens CN-32]
 gi|145564481|gb|ABP75416.1| regulatory inactivation of DnaA Hda protein [Shewanella
           putrefaciens CN-32]
 gi|319426095|gb|ADV54169.1| DnaA regulatory inactivator Hda [Shewanella putrefaciens 200]
          Length = 236

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 93/236 (39%), Gaps = 18/236 (7%)

Query: 21  PKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGK 77
           P N   QL      P     +       +  ++ ++ + +         + L GP  SG+
Sbjct: 2   PLNSPLQLSLPVYLPDDETFNS--YYPAAGNDELIQKLRANAEGNGEAAIYLWGPVKSGR 59

Query: 78  SCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQ 125
           + L +     +                   +     ++    V ++D+D +  +   +  
Sbjct: 60  THLMHAACAHANELDRRSFYIPLGIHASISTALLEGLEQLDLVCIDDVDAIAGHPLWEEA 119

Query: 126 LFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +F + N + ++ + +L+++  + P   G  LPDL SR++     ++    DD     + +
Sbjct: 120 IFDLYNRVAEHKNCALVVSGSSSPAEAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQR 179

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             A R + + + +  +++ RM R L     ++DK+D  +L     +T   A E+L 
Sbjct: 180 RAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235


>gi|326386755|ref|ZP_08208376.1| ATPase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208808|gb|EGD59604.1| ATPase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 212

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 26/219 (11%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
            + P  L    + ++   ++      + +  +WP R  +L GP  SGKS LA  +    +
Sbjct: 4   IALPLELAGGGEIIVGGPSLHAVFAALQAPETWPYRTAVLSGPPRSGKSLLARWFVSSGQ 63

Query: 90  STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                                  L+D D L   + ++FH  N        LL+ +R   V
Sbjct: 64  GD--------------------ALDDADRL--PEVEVFHRWNRAQADGRPLLLVSRQPVV 101

Query: 150 S----WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
           +    W + LPDL SRL AA  + I  PDD  L  ++ +    R + I + +  +++ R+
Sbjct: 102 AGGDGWRITLPDLASRLGAALPLAIGAPDDILLRALVEEHARRRGLMIGESVLDWLLPRI 161

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ERS   AE LV  +D L+L R   +T +L  + L     
Sbjct: 162 ERSHAAAEALVATIDRLSLERKAPVTLALVRDALAGRVH 200


>gi|222055415|ref|YP_002537777.1| Chromosomal replication initiator DnaA [Geobacter sp. FRC-32]
 gi|221564704|gb|ACM20676.1| Chromosomal replication initiator DnaA [Geobacter sp. FRC-32]
          Length = 241

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 25/241 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKSCLANI 83
            QL F FP       D+ +V +  + A               ++ L G  GSGK+ L   
Sbjct: 1   MQLIFDFPVNSKYGFDNFVVCAGNKTAYHFARQLAEGDGTENLLYLYGAKGSGKTHLLTA 60

Query: 84  WSDKSRST--------------------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            ++   S                      +     S  +    +   +L++DI L+  ND
Sbjct: 61  IANSIGSQSGLAALPSISFKDIDKIYDGHYPAEELSKLAEQFKSSPALLIDDIHLIPDND 120

Query: 124 T---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
           +   +L+ + N  +     + ++    P         L SRL    V K+ +  DD L  
Sbjct: 121 SIRVELWQLFNDFYTAGKKIAISGLYPPKELPNLDGHLTSRLLWGLVSKLDISGDDSLRM 180

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++ K+  DRQI + +++ AY++  + R +      +  + + AL     I+   A E L 
Sbjct: 181 ILQKLAEDRQIVVPEEVIAYLLVHLHRDIPTLLDALQLIHHHALMTKKKISLRQAKEALS 240

Query: 241 E 241
            
Sbjct: 241 R 241


>gi|117925602|ref|YP_866219.1| regulatory inactivation of DnaA Hda protein [Magnetococcus sp.
           MC-1]
 gi|117609358|gb|ABK44813.1| regulatory inactivation of DnaA Hda protein [Magnetococcus sp.
           MC-1]
          Length = 247

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 26/243 (10%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
               QL  +FP    +S ++L+V +    A+  +    +     +IL G +G+GK+ L  
Sbjct: 3   TGSAQLLIAFPLDPVLSWENLVVGAHNTIAIHGVRQLEAAKVPGLILTGAAGAGKTHLLQ 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTR-----------------------KPVLLEDIDLL 119
                 R+    + A  LD   +                          +   +++++LL
Sbjct: 63  AAVASVRAQYGEHAAVYLDLATLSKHLENQPKAHSEALLSRFIDRYGSCRLAAIDELELL 122

Query: 120 D---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           +        + ++ N +      LL   R  P +      DL SRL    V+ I  PD+ 
Sbjct: 123 EHAVGLQEGVLYLYNRLRVAGGHLLGAGREDPSTMSGLRDDLRSRLLWGPVLHIDEPDEV 182

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
            L +++ KM ADRQ+ + + +  +++ R+ RS+    + + ++D  AL +   +T  LA 
Sbjct: 183 ALGQIMDKMAADRQLRLSEAVRHFLLLRLPRSVPVFAQTIQRLDEEALRQQRALTVPLAK 242

Query: 237 EVL 239
           EVL
Sbjct: 243 EVL 245


>gi|298368961|ref|ZP_06980279.1| DnaA regulatory inactivator Hda [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282964|gb|EFI24451.1| DnaA regulatory inactivator Hda [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 225

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F        D  L  ++  + V ++    +   + + + G  G+GKS L   W  
Sbjct: 6   QLIFDFATRDYPGFDKFL-GTSNAELVYVL---QNRHGQFIYVWGEQGAGKSHLLQAWVA 61

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +         L   +++    + ++ I+ L   +  L F + N         
Sbjct: 62  QALGMGKNAVYIDAATSPLTESVLEA-DYLAIDQIEKLGNEEQALLFAVFNRFRNSGKGF 120

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+ +        V   DL +R+    V ++    D      +V M A RQ+ ID ++  Y
Sbjct: 121 LLLSSEHTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALVSMAAARQVTIDLEIFEY 180

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           ++    R +    +++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 181 LLNHWRRDMDSLMQMLDTLDNYAVTMGKRITLPLLRQLLKQQE 223


>gi|77360843|ref|YP_340418.1| regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875754|emb|CAI86975.1| putative regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 228

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 16/225 (7%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
           L            +D L  S ++ +   +        +   L G   SGKS L      +
Sbjct: 7   LPDDETFTSYFGGEDSLEVSHLKDSFSKLSQ----SFQYTYLCGLGDSGKSHLLYATCIQ 62

Query: 88  SRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQ 135
           ++    SN+  S+  ++         ++    + ++D+ L+  +   +  LF+  N  ++
Sbjct: 63  AQERGLSNMLLSMREVIDFGPMVLEGLEALDVLCIDDVHLVAGDDAWEKALFNFFNRFNE 122

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
               L++TA   P    + LPDL SRLK  T ++I    DD   + +VK    R + +  
Sbjct: 123 PKKMLVVTADLLPDMLNISLPDLESRLKWGTTLQIRSMSDDDKAQALVKRTKMRGLELSD 182

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + A +++ R+ R +     ++DK+D+ +++    +T       LK
Sbjct: 183 ECARFLLTRLSRDMRTLLDVLDKLDHASMAAQRKLTIPFIKSTLK 227


>gi|119775051|ref|YP_927791.1| DNA replication initiation factor [Shewanella amazonensis SB2B]
 gi|119767551|gb|ABM00122.1| regulatory inactivation of DnaA Hda protein [Shewanella amazonensis
           SB2B]
          Length = 241

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 93/235 (39%), Gaps = 18/235 (7%)

Query: 22  KNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKS 78
           ++   QL      P     +       +  ++ +  + S  S    + + L GP  SG++
Sbjct: 8   QHPPLQLSLPVHLPDDETFTS--YYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRT 65

Query: 79  CLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQL 126
            L +    ++                   +     ++    + ++D+D +  +   +  +
Sbjct: 66  HLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAI 125

Query: 127 FHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           F + N + +    SL+++A   P+  G  LPDL SR+      ++    DD     + + 
Sbjct: 126 FDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRR 185

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            A R + + + +  +++ RM R L     ++D++D  ++     +T     E+L+
Sbjct: 186 AAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR 240


>gi|253699565|ref|YP_003020754.1| Chromosomal replication initiator DnaA [Geobacter sp. M21]
 gi|251774415|gb|ACT16996.1| Chromosomal replication initiator DnaA [Geobacter sp. M21]
          Length = 234

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 19/233 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLANI- 83
            Q  F FP       ++ +V    + A +            ++ + GP GSGK+ L    
Sbjct: 1   MQFIFDFPVVPRFGFENFVVCGGNKTAYQFAKKLVEDSTENLLYIYGPEGSGKTHLLTAL 60

Query: 84  -------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLF 127
                              ++  S     L     D    ++L+D+ LL        +L+
Sbjct: 61  SNSIDGKYFSFRDAGSLYGASVGSEDPSRLAEHFQDA-AALVLDDLHLLPNLQEVRVELW 119

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            + N+ +     + ++    P         L SRL    V ++ + DD+    ++ K+  
Sbjct: 120 ELFNAFYSSGRKIAISGLMPPKELPHLDGHLTSRLLWGLVARMDVSDDESRRMILKKLAE 179

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           DRQ+ +   +   ++ R+ R +      ++ ++  A+S    ++  LA E  +
Sbjct: 180 DRQMALPDDVIDEMLLRVRRDIPSLVYALENINRYAISTKRKVSLRLAKEAFR 232


>gi|251791830|ref|YP_003006550.1| DnaA regulatory inactivator Hda [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533217|gb|ACS96463.1| DnaA regulatory inactivator Hda [Aggregatibacter aphrophilus
           NJ8700]
          Length = 234

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114
            +   L G  GSGKS L         + +   +   L+            ++ +  V L+
Sbjct: 44  QQFFYLWGNKGSGKSHLLKGVCQHYLAQQRPALYVPLNKAQYFSPAVLENLEQQALVCLD 103

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  N   +  +F +IN + +   +LL M+A   P +  V LPDL SRL    V ++
Sbjct: 104 DLQAVIGNAEWEVAIFDLINRVRETGRTLLIMSADQSPANLPVQLPDLASRLTWGEVYQL 163

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +  +D     V+ K    R I +  + A ++ +R+ER +      ++K+D  +L     +
Sbjct: 164 APLNDKQKIDVLQKAAYQRGIELPDETANFLFKRLERDMKTLFNALEKLDQASLQAQRKL 223

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 224 TIPFVKEILA 233


>gi|197119682|ref|YP_002140109.1| DnaA regulatory inactivator Hda [Geobacter bemidjiensis Bem]
 gi|197089042|gb|ACH40313.1| DnaA regulatory inactivator Hda [Geobacter bemidjiensis Bem]
          Length = 234

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 92/232 (39%), Gaps = 17/232 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLANIW 84
            QL F FP       ++ +V    + A +            ++ + GP GSGK+ L    
Sbjct: 1   MQLIFDFPVVPRFGFENFVVCGGNKTAYQFAKKLVEDPTENLLYIYGPEGSGKTHLLTAL 60

Query: 85  SDKSRSTRFS-------------NIAKSLDSILIDTRKPVLLEDIDLL-DFNDT--QLFH 128
           S+      FS             +   S  +        ++L+D+ LL + ++   +L+ 
Sbjct: 61  SNSIDGRYFSFRDAGSLYGSSVGSEGPSRLAEHFQGAAALVLDDLHLLPNLHEVRVELWE 120

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N+ +     + ++    P         L SRL    V ++ + DD+    ++ K+  D
Sbjct: 121 LFNAFYSSGRKIAISGLMPPKELPHLDGHLTSRLLWGLVARMDVSDDESRRMILKKLAED 180

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           RQ+ +   +   ++ R+ R +      ++ ++  A+S    ++  LA E  +
Sbjct: 181 RQMALPDDVIDEMLLRVRRDIPSLVYALENINRYAISTKRKVSLRLAKEAFR 232


>gi|119477092|ref|ZP_01617328.1| hypothetical protein GP2143_02179 [marine gamma proteobacterium
           HTCC2143]
 gi|119449455|gb|EAW30693.1| hypothetical protein GP2143_02179 [marine gamma proteobacterium
           HTCC2143]
          Length = 252

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 86/228 (37%), Gaps = 14/228 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           EQL  +       + D+          +  +    S   R V L G  GSG+S L     
Sbjct: 25  EQLPLAVQLRDDATFDNFYSGD-NALLLDTLRKQLSDGERYVYLFGREGSGRSHLLQAAC 83

Query: 86  DKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDIDLL---DFNDTQLFHIINS 132
             +     + I   L  +           ++ +  V L+D+D +        QLFH+ N 
Sbjct: 84  HHADKNGSNAIYLPLSELGEYPPEELFDGLEYQSLVCLDDVDAVIDKGLWQRQLFHLFNR 143

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           +      LL++AR       + L DL SRL   TV ++   +DD     I      R + 
Sbjct: 144 LSDAQIPLLISARCAVRDLNIELQDLASRLSWGTVFQLHNLNDDQRTATIKLRAERRGLL 203

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +  ++A YI  R  R       ++D +D+ +L+    +T     + + 
Sbjct: 204 MGDEVAQYIYNRCRRDTQALLSVLDTLDSASLTYQRRLTVPFVKKTMN 251


>gi|148263480|ref|YP_001230186.1| chromosomal replication initiator, DnaA [Geobacter uraniireducens
           Rf4]
 gi|146396980|gb|ABQ25613.1| regulatory inactivation of DnaA Hda protein [Geobacter
           uraniireducens Rf4]
          Length = 241

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 92/241 (38%), Gaps = 25/241 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKSCL--- 80
            QL F FP       D+ +V +  + A               ++ L G +GSGK+ L   
Sbjct: 1   MQLIFDFPVNPKFGFDNFVVCAGNKTAYHFARQLAEGDGTENLLYLYGSTGSGKTHLLTA 60

Query: 81  -ANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            AN    ++                          S  +   +    +L++DI L+  ND
Sbjct: 61  MANSICREAGLDAIPSISFKNIDELYRGNYPAEEPSKLAERFNNAPALLVDDIHLIPDND 120

Query: 124 T---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               +L+ + N  +     + +T    P         L SRL    V K+ +  DD L  
Sbjct: 121 NIRVELWQLFNDFYTAGKKIAITGLNPPKELPHLDGHLTSRLLWGLVTKLDISGDDSLRM 180

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++ K+  DRQ+ + + + A+++  + R +      ++++   A++    I+   A E L+
Sbjct: 181 ILQKLAEDRQVALPEDVIAHLLVHIRRDIPSLLNALEQIRRHAIATKRKISLRQAKEALQ 240

Query: 241 E 241
            
Sbjct: 241 R 241


>gi|152979518|ref|YP_001345147.1| chromosomal replication initiator DnaA [Actinobacillus succinogenes
           130Z]
 gi|150841241|gb|ABR75212.1| Chromosomal replication initiator DnaA [Actinobacillus succinogenes
           130Z]
          Length = 230

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 90/189 (47%), Gaps = 13/189 (6%)

Query: 64  SRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
            +   + G  G GKS L     + +  ++R+  +  +AKS+         ++ ++ V L+
Sbjct: 40  QQFFYIWGEEGCGKSHLLKAATHQFFGENRTALYVPLAKSVYFSPAVLDNLEQQELVCLD 99

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  N+     +F + N I ++  +LL+ +A   P S  V LPDL SRL    + ++
Sbjct: 100 DLQCVIGNEEWEVAVFDLFNRIKEHGKTLLIVSANQSPNSLPVQLPDLASRLSWGEIYQL 159

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
              DD      + +    R I +  + A+++++R++R++     ++D++D  +L     +
Sbjct: 160 HALDDQQKITALQQNARQRGIELPDETASFLIKRLDRNMHNLFAVLDQLDKASLQAQRKL 219

Query: 231 TRSLAAEVL 239
           T     E L
Sbjct: 220 TIPFVKETL 228


>gi|212211775|ref|YP_002302711.1| DnaA-related protein [Coxiella burnetii CbuG_Q212]
 gi|212010185|gb|ACJ17566.1| DnaA-related protein [Coxiella burnetii CbuG_Q212]
          Length = 237

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 11/226 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL          +  +    + I     L +         + L G    G++ L     
Sbjct: 3   DQLPLRVQLREETTFANFYGGNNITLLKALNELLEGKGESFIYLWGEPSVGRTHLLQACC 62

Query: 86  DKSRSTRFSNIAKSLDSILI--------DTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134
               +     +  +L +  +        +++  + ++DID +      +  L H  N + 
Sbjct: 63  HTMNNRSLEAMYLALKTPQLAPSILQGLESKPLICIDDIDAVLSQPDWEEALLHFYNRVR 122

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           +    L++     P      L DL SRL    V ++    D    K +     DR   + 
Sbjct: 123 ESQVKLVIAGNYVPPQLNCQLADLRSRLSWGLVFQVIGLTDAEKIKALQMRAHDRGFELS 182

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            ++  ++++   R +     L+DK+D  +L     +T     EVL 
Sbjct: 183 DEVGQFLLRHYPRDMSALFNLLDKLDQASLIAQRKLTVPFVKEVLN 228


>gi|157961790|ref|YP_001501824.1| DNA replication initiation factor [Shewanella pealeana ATCC 700345]
 gi|157846790|gb|ABV87289.1| Chromosomal replication initiator DnaA [Shewanella pealeana ATCC
           700345]
          Length = 236

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 90/234 (38%), Gaps = 18/234 (7%)

Query: 23  NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSC 79
           N   QL      P     +       +  ++ ++ +        +  V L GP  SG++ 
Sbjct: 4   NSPLQLSLPVHLPDDETFNS--YYPATGNDELIQSLQECAEGKSNGAVFLWGPEKSGRTH 61

Query: 80  LANIWSDKSRSTR---------FSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127
           L +     +                   +     ++    V ++D+D +  +   +  +F
Sbjct: 62  LMHAACAHANDLGRSSFYIPLGIHASISTALLEGLEKLDLVCIDDVDAIAGHPLWEEAIF 121

Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            + N I +    SL+++A   P   G  LPDL SR++     ++    D+     + +  
Sbjct: 122 DLYNRISEQKTCSLVVSASVSPSDSGFSLPDLVSRMQWGLNYQLQPMADEEKLAALQRRA 181

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           A R + + + +  +++ R+ R L     ++D++D  ++     +T     E+L+
Sbjct: 182 AMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQRKLTIPFIKEMLR 235


>gi|262089713|gb|ACY24808.1| DnaA family protein [uncultured organism]
          Length = 237

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 86/231 (37%), Gaps = 16/231 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLV--HSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81
            +QL  S       + ++     H+     V+ +           + L G  G G + L 
Sbjct: 5   PQQLSLSVNLNDDATFENFYAPAHTHNAMVVQGLRDQLDGSGESFIYLWGAPGCGLTHLL 64

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFN-----------DTQLFH 128
                +++    S     L  ++      +   LE +DL+  +           +  +FH
Sbjct: 65  QAACHQAQEMGSSVQYLPLRDLVGYAPDDLFTGLEMVDLVCLDCLPTIAGRADWELAIFH 124

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    + L DL SRL+     ++    D+  ++ +      
Sbjct: 125 LYNRLRDAGKCLLVAAEHSPRELALSLEDLRSRLQWGLTYQVHSLTDEDKQQALQMRARA 184

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +   +A YI+QR+ R        + ++D+ +L+    +T     +VL
Sbjct: 185 RGLELSDDVAQYIIQRLPRDTNELFWQLARLDHASLAEQRKLTIPFVKKVL 235


>gi|254283923|ref|ZP_04958891.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR51-B]
 gi|219680126|gb|EED36475.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR51-B]
          Length = 237

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 12/231 (5%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
            D+P +   QL  +       + D+    +  E AV  +            L G +GSGK
Sbjct: 2   TDRPFSTAGQLPLAIALDAEATFDNFAADTTSELAVDWLKDNHESAGG--YLFGGAGSGK 59

Query: 78  SCLANIWSDKSRS-TRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN---DTQLF 127
           S L       + +   +  +A+  D         ID    V L+DID +  +   +  LF
Sbjct: 60  SHLLQASCAATTAPALYIPLAEFADYPAAQVLDGIDALSLVALDDIDRIAGDSSWEEALF 119

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N      + LL++A +        L DL SRL +    ++  PDDD LE+++     
Sbjct: 120 HAFNLCVGSGTRLLVSASSTASQIDFTLADLQSRLGSLAAFRLPRPDDDSLERMLDLRAG 179

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
            R I +  ++  YIV R  R       L++K+D  AL+R   +T  L  E+
Sbjct: 180 HRGITLSAEVKRYIVTRAPRDSHAVMALLEKLDTAALARHRLVTIPLIKEL 230


>gi|29655022|ref|NP_820714.1| DnaA-related protein [Coxiella burnetii RSA 493]
 gi|161830954|ref|YP_001597555.1| DnaA-homolog protein Hda [Coxiella burnetii RSA 331]
 gi|29542291|gb|AAO91228.1| DnaA-related protein [Coxiella burnetii RSA 493]
 gi|161762821|gb|ABX78463.1| DnaA-homolog protein Hda [Coxiella burnetii RSA 331]
          Length = 237

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 11/226 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL          +  +    + I     L +         + L G    G++ L     
Sbjct: 3   DQLPLRVQLREETTFANFYGGNNITLLKALNELLEGKGESFIYLWGEPSVGRTHLLQACC 62

Query: 86  DKSRSTRFSNIAKSLDSILI--------DTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134
               +     +   L +  +        +++  + ++DID +      +  L H  N + 
Sbjct: 63  HTMNNRSLEAMYLPLKTPQLAPSILQGLESKPLICIDDIDAVLSQPDWEEALLHFYNRVR 122

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           +    L++     P      L DL SRL    V ++    D    K +     DR   + 
Sbjct: 123 ESQVKLVIAGNYVPPQLNCQLADLRSRLSWGLVFQVIGLTDAEKIKALQMRAHDRGFELS 182

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            ++  ++++   R +     L+DK+D  +L     +T     EVL 
Sbjct: 183 DEVGQFLLRHYPRDMSALFNLLDKLDQASLIAQRKLTVPFVKEVLN 228


>gi|262089788|gb|ACY24881.1| DnaA family protein [uncultured organism]
          Length = 237

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 86/231 (37%), Gaps = 16/231 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLV--HSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81
            +QL  S       + ++     H+     V+ +           + L G  G G + L 
Sbjct: 5   PQQLSLSVNLNDDATFENFYAPAHTHNAMVVQGLRDQLDGSGESFIYLWGAPGCGLTHLC 64

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFN-----------DTQLFH 128
                +++    S     L  ++      +   LE +DL+  +           +  +FH
Sbjct: 65  RAACHQAQEMGSSVQYLPLRDLVGYAPDDLFTGLEMVDLVCLDCLPTIAGRADWELAIFH 124

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      LL+ A   P    + L DL SRL+     ++    D+  ++ +      
Sbjct: 125 LYNRLRDAGKCLLVAAEHSPRELALSLEDLRSRLQWGLTYQVHSLTDEDKQQALQMRARA 184

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +   +A YI+QR+ R        + ++D+ +L+    +T     +VL
Sbjct: 185 RGLELSDDVAQYIIQRLPRDTNELFWQLARLDHASLAEQRKLTIPFVKKVL 235


>gi|110834432|ref|YP_693291.1| hypothetical protein ABO_1571 [Alcanivorax borkumensis SK2]
 gi|110647543|emb|CAL17019.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 245

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 13/227 (5%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL  +     G + D+         AV  +        R        G GKS L    
Sbjct: 18  SAQLPLALQLREGNALDNFQSGP-NGAAVAGLYEAVQGADRQAFFWAGDGQGKSHLLEGA 76

Query: 85  SDKSRSTRFSNIAKSLDSILI---------DTRKPVLLEDIDLLDF---NDTQLFHIINS 132
              ++             I+          +    + ++D  L       +  LFH+ N 
Sbjct: 77  VRLAQHNGLDACLLPAREIIPLVPEVLESMEQFGLLAIDDCQLFAGLPAWEEALFHLYNR 136

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           +      LL+TA   P + G+ LPDL +RL A  V ++   +DD L+ ++ +    R + 
Sbjct: 137 LMSLGGRLLVTANASPAAMGLMLPDLATRLAAGPVYRLMSLEDDDLQALLQERAKARGLR 196

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           ++ ++A YIV R ERS      L+ K+D LAL++   +T       L
Sbjct: 197 LEPEVAHYIVLRSERSAGALMALLAKLDRLALAQQRPVTIPFVKYAL 243


>gi|24374406|ref|NP_718449.1| DNA replication initiation factor [Shewanella oneidensis MR-1]
 gi|24348974|gb|AAN55893.1|AE015726_1 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 236

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 92/236 (38%), Gaps = 18/236 (7%)

Query: 21  PKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGK 77
           P N   QL      P     +       +  ++ ++ + +         + + GP  SG+
Sbjct: 2   PLNSPLQLSLPVYLPDDETFNS--YYPAAGNDELIQKLRANAEGHGEAAIYVWGPVKSGR 59

Query: 78  SCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQ 125
           + L +     +                   +     ++    + ++D+D +  +   +  
Sbjct: 60  THLMHAACAHANELDRRSFYLPLGIHASISTALLEGLEQLDLICIDDVDDIAGHPVWEEA 119

Query: 126 LFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +F + N + +    +L+++ R+ P   G  LPDL SR++     ++    DD     + +
Sbjct: 120 IFDLYNRVAENKRCALVVSGRSAPADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQR 179

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             A R + + + +  +++ RM R L     ++DK+D  +L     +T   A E+L 
Sbjct: 180 RAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235


>gi|113969917|ref|YP_733710.1| DNA replication initiation factor [Shewanella sp. MR-4]
 gi|114047153|ref|YP_737703.1| DNA replication initiation factor [Shewanella sp. MR-7]
 gi|117920090|ref|YP_869282.1| DNA replication initiation factor [Shewanella sp. ANA-3]
 gi|113884601|gb|ABI38653.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. MR-4]
 gi|113888595|gb|ABI42646.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. MR-7]
 gi|117612422|gb|ABK47876.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. ANA-3]
          Length = 236

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 92/236 (38%), Gaps = 18/236 (7%)

Query: 21  PKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGK 77
           P N   QL      P     +       +  ++ ++ + +         + + GP  SG+
Sbjct: 2   PLNSPLQLSLPVYLPDDETFNS--YYPAAGNDELIQKLRANAEGQGEAAIYVWGPVKSGR 59

Query: 78  SCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQ 125
           + L +     +                   +     ++    + ++D+D +  +   +  
Sbjct: 60  THLMHAACAHANELDRRSFYLPLGIHASISTALLEGLEQLDLICIDDVDDIAGHPIWEEA 119

Query: 126 LFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +F + N + +    +L+++ R+ P   G  LPDL SR++     ++    DD     + +
Sbjct: 120 IFDLYNRVAENKRCALVVSGRSAPADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQR 179

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             A R + + + +  +++ RM R L     ++DK+D  +L     +T   A E+L 
Sbjct: 180 RAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235


>gi|224824666|ref|ZP_03697773.1| DnaA regulatory inactivator Hda [Lutiella nitroferrum 2002]
 gi|224603159|gb|EEG09335.1| DnaA regulatory inactivator Hda [Lutiella nitroferrum 2002]
          Length = 224

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 10/223 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL          + D+  V     + +  +        R + L G  GSGK+ L   W 
Sbjct: 2   DQLILDLTPTPLPAFDNF-VAERNREVITALTHPGD--ERFIYLWGEPGSGKTHLLQAWI 58

Query: 86  DKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYD-SS 139
             +    R++ + +  +            + ++ +D L  +D   LF   NS+ +   S 
Sbjct: 59  AHAETLGRASIYLDGQREHLPDFAREASFIAVDHVDDLAPDDQITLFSFYNSLKEGGESR 118

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LLM  R  P++  V   DL +RL    V ++    D      +    A+RQ+ I   +  
Sbjct: 119 LLMAGRLPPMAL-VVRDDLRTRLGWGLVFEVKPLSDADKLAALHAHAAERQLAIPDDVFR 177

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           Y++    R L     ++D +D  +L+    IT  L   +L   
Sbjct: 178 YLLTHWRRDLSSLIGMLDLLDRYSLALRRPITVPLVKNILHTA 220


>gi|153208226|ref|ZP_01946636.1| DnaA-homolog protein Hda [Coxiella burnetii 'MSU Goat Q177']
 gi|165923943|ref|ZP_02219775.1| DnaA-homolog protein Hda [Coxiella burnetii RSA 334]
 gi|212217942|ref|YP_002304729.1| DnaA-related protein [Coxiella burnetii CbuK_Q154]
 gi|120576131|gb|EAX32755.1| DnaA-homolog protein Hda [Coxiella burnetii 'MSU Goat Q177']
 gi|165916599|gb|EDR35203.1| DnaA-homolog protein Hda [Coxiella burnetii RSA 334]
 gi|212012204|gb|ACJ19584.1| DnaA-related protein [Coxiella burnetii CbuK_Q154]
          Length = 237

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 11/226 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL          +  +    + I     L +         + L G    G++ L     
Sbjct: 3   DQLPLRVQLREETTFANFYGGNNITLLKALNELLEGKGESFIYLWGEPSVGRTHLLQACC 62

Query: 86  DKSRSTRFSNIAKSLDSILI--------DTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134
               +     +  SL +  +        +++  + ++DID +      +  L H  N + 
Sbjct: 63  HTMNNRSLEAMYLSLKTPQLAPSILQGLESKPLICIDDIDAVLSQPDWEEALLHFYNRVR 122

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           +    L++     P      L DL SRL    V ++    D    K +     DR   + 
Sbjct: 123 ESQVKLVIAGNYVPPQLNCQLTDLRSRLSWGLVFQVIGLTDAEKIKALQMRAHDRGFELS 182

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             +  ++++   R +     L+DK+D  +L     +T     EVL 
Sbjct: 183 DGVGQFLLRHYPRDMSALFNLLDKLDQASLIAQRKLTVPFVKEVLN 228


>gi|261365987|ref|ZP_05978870.1| DnaA regulatory inactivator Hda [Neisseria mucosa ATCC 25996]
 gi|288565417|gb|EFC86977.1| DnaA regulatory inactivator Hda [Neisseria mucosa ATCC 25996]
          Length = 222

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F        D  L  +   + V ++          + + G  G+GKS L   W  
Sbjct: 3   QLIFDFAERGYPGFDKFL-GTENAELVYVLQHKHD---PFIYVWGEEGAGKSHLLRAWVA 58

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++     ++      A  L     +  + + ++ I+ L   +  L F + N         
Sbjct: 59  QALDAGKKAVYIDASATPLTEAAFEA-EYLAIDQIEKLGNEEQALLFAVFNRFRNSGKGF 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+ +        V   DL +R+    V ++    D      +V M A RQ+ ID ++  Y
Sbjct: 118 LLLSSEHTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALVSMAAARQVTIDPEIFEY 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           ++    R +    +++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 178 LLNHWRRDMDSLMQMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220


>gi|300940261|ref|ZP_07154858.1| DnaA regulatory inactivator Hda [Escherichia coli MS 21-1]
 gi|300454902|gb|EFK18395.1| DnaA regulatory inactivator Hda [Escherichia coli MS 21-1]
          Length = 270

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 39  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 98

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 99  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 158

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 159 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 218

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 219 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 269


>gi|194290639|ref|YP_002006546.1| dnaa regulatory inactivator hda [Cupriavidus taiwanensis LMG 19424]
 gi|193224474|emb|CAQ70485.1| regulatory factor involved in inactivation of DnaA; putative ATPase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 235

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP------SWPSRVVILVGPSGSGK 77
           + +QL          + ++ +V ++  +AV+ +   P          R++ L G  G G+
Sbjct: 4   RPKQLSLELGSPPPSTFENFVV-ASNREAVQRLRELPPALAQEHASDRLIYLWGEVGCGR 62

Query: 78  SCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIIN 131
           + L +   +       R    S      D +     +   ++D++LLD      +F + N
Sbjct: 63  THLLHAVCEAGPQHGIRCRYLSPHHPLSDFLFDPWCQLYTVDDVELLDEARQIAVFSLYN 122

Query: 132 SIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
            +  +  + L++     P +  V   DL +RL    V +++   DD  +  ++    +R 
Sbjct: 123 EVRAHGRTALVVAGGLAPRAMPVR-EDLRTRLGWGLVYQVAPLSDDDKKAAVLHAARERG 181

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +  ++  ++V R  R +     L+D +D  +L R   +T  L  E+  E
Sbjct: 182 LQLSPEITHWLVTRHYRDMPSLMALLDALDTYSLERKRPVTLPLLREMFAE 232


>gi|307823566|ref|ZP_07653795.1| DnaA regulatory inactivator Hda [Methylobacter tundripaludum SV96]
 gi|307735551|gb|EFO06399.1| DnaA regulatory inactivator Hda [Methylobacter tundripaludum SV96]
          Length = 234

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 12/232 (5%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            EQL   F      + DD    +  E    L         + + L G SG GK+ L    
Sbjct: 2   AEQLPLHFEFRANQTFDDFFPGANHEIITHLQQCIAGLGEQQIFLWGKSGQGKTHLLQAC 61

Query: 85  SDKSRSTRFSNIAKSLDSILI---------DTRKPVLLEDIDLLDFN---DTQLFHIINS 132
             ++++   S+    L    +         D    V  ++I+ +  N   +   F+  N 
Sbjct: 62  CHRAQNQNLSSFYFDLSQAELPDPSLLNGLDEYDVVCFDNIERIAGNATWELAFFNFFNQ 121

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
                  L+++A + P    + LPDL +RL     +KI    D      ++         
Sbjct: 122 HRDRGHKLIVSASSAPNEIAIQLPDLKTRLNWGLSLKIQPLTDSDRIAALIFKADQMGFE 181

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           I  +   +++   +R L     L++K+D  +L+    +T     ++L E   
Sbjct: 182 IAPQAGRFLLTHYDRDLASLWALLEKLDRASLAAKRKLTLPFLKQILNEDSH 233


>gi|238898965|ref|YP_002924647.1| regulatory factor involved in inactivation of DnaA [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466725|gb|ACQ68499.1| regulatory factor involved in inactivation of DnaA [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 246

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               +  +      R +      GSG+S L +
Sbjct: 15  NNPTQLPLPLFLPDDATFSGFYPGDNSALLAAIESALCDSHGRYIYFWSKQGSGRSHLLH 74

Query: 83  IWSD----KSRSTRFSNIAKSL-----DSILIDTRKPVLLEDIDLLDFN---DTQLFHII 130
                   + ++  +  + K           ++    + +++I+ +  +   +  +FH+ 
Sbjct: 75  AACSTLSKQGKAVGYVPLDKRAYFTVEVLEGMEQLALICIDNIEHIVGDIEWEMGIFHLY 134

Query: 131 NSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I + D + LLMT    P    + LPDL SRL    + K+    DD     +      R
Sbjct: 135 NRILEKDHTCLLMTGDRPPRQLHLHLPDLASRLDWGQIYKLQPLSDDDKVLSLQLRAKLR 194

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + +++  ++++R++R +      +D++D  ++     +T     E+L+
Sbjct: 195 GFELPEEVGRFMLKRLDREMPSLFMALDRLDKASIRAQRKLTIPFVKEILR 245


>gi|254513812|ref|ZP_05125873.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR5-3]
 gi|219676055|gb|EED32420.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR5-3]
          Length = 235

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 11/233 (4%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG 76
            +    N+  QL          + D+ L   A+   +  +      P +   L G +G G
Sbjct: 4   DSATASNQSPQLPLQIGLQDETTFDNFLAREALAPLLDSMSRPHCEPLQF--LHGAAGEG 61

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN---DTQLF 127
           KS L       +    +  +A  L+S        +++   + L+D+D++      +  LF
Sbjct: 62  KSHLLQALCHATDGAVYLPLAVLLESPPSDLFQDLESSSLLALDDLDVIAGRREWEEALF 121

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H+IN        L M AR      G+ L DL SRL       +S  DD   + ++     
Sbjct: 122 HLINRARAAQCPLWMAARRPANDLGLQLADLSSRLAGGVTWALSAADDSDKQAILQFRAR 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            + + + + +A Y+  R  R+L    + +D++D  +L     +T  L  EV+ 
Sbjct: 182 RKGLVLSESVAHYVCSRESRALADLMETLDRLDRASLQLQRPLTVPLIREVMA 234


>gi|114319679|ref|YP_741362.1| regulatory inactivation of DnaA Hda protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226073|gb|ABI55872.1| regulatory inactivation of DnaA Hda protein [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 245

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 17/248 (6%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP-SWPSRVVIL 69
            V D      P    +QL          S D   V  A +QA+  +      +  R++ L
Sbjct: 1   MVADSDNTSAP--PVQQLALDIRWTDIASLDSF-VAGANQQALDAVRRAAMGFGDRLLFL 57

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------ILIDTRKPVLLEDIDLL 119
            G    GKS L      ++    F      L+             +++   + L+D+ +L
Sbjct: 58  YGQGPVGKSHLLQAACREAGERGFKAAYLPLNEFQGMPPGSVLAGMESMDLLALDDLQVL 117

Query: 120 DFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                 +   F++ N        ++++A   PV   + LPDL SRL+    +++   DD 
Sbjct: 118 AGEADWEEHFFYLFNRTRASGGHMILSADRRPVDLSLVLPDLASRLQWGLTLRLEPLDDV 177

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
              + +    A R + +      +++ R  R L    +L+D++D  +L+    +T     
Sbjct: 178 GKLQGLQARAAARGLELPDDTGRFLLSRYARDLGGLFQLLDRLDGASLAAQRRLTIPFVR 237

Query: 237 EVLKETQQ 244
           +VL   + 
Sbjct: 238 QVLGGDEG 245


>gi|326405005|ref|YP_004285087.1| hypothetical protein ACMV_28580 [Acidiphilium multivorum AIU301]
 gi|325051867|dbj|BAJ82205.1| hypothetical protein ACMV_28580 [Acidiphilium multivorum AIU301]
          Length = 237

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
           +   F      +  D +  ++   A   + +   W +R ++L G +GSGKS LA IW+ +
Sbjct: 1   MALPFDEPERFALADFIEAASNAAARAALAAPGDWVNRRLVLWGEAGSGKSHLAWIWAAR 60

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147
           + +TR    A  L +       P+L+EDID           +     Q    +LMT RT 
Sbjct: 61  TCATRLD--AARLRTPASPGGAPLLIEDIDAAAAPLALFATLE-RATQAAVPVLMTCRTP 117

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P    V  PDL SRL+A+  ++I   + + L+ ++ ++ A RQ+ +   L  +++ R+ R
Sbjct: 118 PARLPVEPPDLASRLRASLTIRIEPAEPELLDALLHRLAAARQMSLPPALHQFLLTRLPR 177

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
                 + + ++D  AL+ G   +R LA  +L E    +
Sbjct: 178 RPAVLREAIARLDRYALALGTAPSRRLAERLLDELADPE 216


>gi|255065691|ref|ZP_05317546.1| DnaA regulatory inactivator Hda [Neisseria sicca ATCC 29256]
 gi|255050009|gb|EET45473.1| DnaA regulatory inactivator Hda [Neisseria sicca ATCC 29256]
          Length = 222

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F        D  L  +   + V ++          + + G  G+GKS L   W  
Sbjct: 3   QLIFDFAERGYPGFDKFL-GTENAELVYVLQHKHD---PFIYVWGEEGAGKSHLLRAWVA 58

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++     ++      A  L     +  + + ++ I+ L   +  L F + N         
Sbjct: 59  QALDAGKKAVYIDAAATPLTEAAFEA-EYLAIDQIEKLGNEEQALLFAVFNRFRNSGKGF 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+ +        V   DL +R+    V ++    D      +V M A RQ+ ID ++  Y
Sbjct: 118 LLLSSEHTPQQLVIREDLRTRMAYCLVYEVKPLTDREKIDALVSMAAARQVTIDPEIFEY 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           ++    R +    +++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 178 LLNHWRRDMDSLMQMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220


>gi|296282392|ref|ZP_06860390.1| ATPase [Citromicrobium bathyomarinum JL354]
          Length = 196

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 85/203 (41%), Gaps = 24/203 (11%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
           ++ SA    V  +     WP R  IL G S SGKS L   ++                  
Sbjct: 13  VIGSANLAVVEALREPERWPFRTAILRGESRSGKSLLGRWFAHAGLGETIDPAD------ 66

Query: 104 LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
                              +T LFH  N   +  ++LL+     P  W + LPDL SRL 
Sbjct: 67  ----------------AMEETALFHRWNRAQEEGTALLLIPEKAP--WEIALPDLRSRLG 108

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           AA  ++I  PDDD +  +IV   A R + + +    Y+V RM RS   AE+ V  +D LA
Sbjct: 109 AALALEIGQPDDDMMRDLIVSHAARRGLMLGEDALTYVVPRMTRSFAAAERFVAVLDRLA 168

Query: 224 LSRGMGITRSLAAEVLKETQQCD 246
           L R    TR+L  + L+     D
Sbjct: 169 LERQARPTRNLCRDALETLYGPD 191


>gi|73542460|ref|YP_296980.1| hypothetical protein Reut_A2775 [Ralstonia eutropha JMP134]
 gi|72119873|gb|AAZ62136.1| regulatory inactivation of DnaA Hda protein [Ralstonia eutropha
           JMP134]
          Length = 235

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 99/234 (42%), Gaps = 15/234 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGK 77
           + +QL          + D+ +V ++  +AV+ +   PS         R+  L G +G G+
Sbjct: 4   RPKQLSLELGSPPPSTFDNFVV-ASNREAVQRLHDLPSAVAQERAIDRLFYLWGENGCGR 62

Query: 78  SCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIIN 131
           + L +   + +          S      D +   + +   ++D++LLD      +F + N
Sbjct: 63  THLLHAVCEATPQTGINCRYLSPHHPLSDFLFDPSCQLYTVDDVELLDEARQIAVFSLYN 122

Query: 132 SIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
            +  +  ++L++     P +  V   DL +RL    V ++    D+     +++   +R 
Sbjct: 123 EVRAHVRTALVVAGGMAPRAMPVR-EDLRTRLGWGLVYQVQPLSDEDKMSAVLQAARERG 181

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + +  ++  ++V R  R +     L+D +D  +L R   +T  L  E+  E ++
Sbjct: 182 LQLSPEITHWLVTRHYRDMPSLMALLDALDTYSLERKRPVTLPLLREMFAEFRE 235


>gi|53803270|ref|YP_114933.1| DnaA domain-containing protein [Methylococcus capsulatus str. Bath]
 gi|53757031|gb|AAU91322.1| DnaA domain protein [Methylococcus capsulatus str. Bath]
          Length = 232

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +Q+   F      + +        E A     S       ++ L G +G GK+ L N  
Sbjct: 2   AQQIPLHFAVDPLQTFEAYWAGPNAEAAEAARRSARGEGDTLLYLWGDTGLGKTHLVNAA 61

Query: 85  SDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132
             ++     S     L  I          ++ +  V L+DID +      + QLF + N+
Sbjct: 62  CREAFHNGRSAACLPLALIGECGPAVLEGMENQNLVCLDDIDTIAGRDDWERQLFGLFNA 121

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           +    ++LL+TA   P    V LPDL +RL    V+++    D+     + +      + 
Sbjct: 122 MRDAGNTLLITATAPPAELPVALPDLKTRLAWGLVLRLHPLTDEHKLAALERRAGMLGLD 181

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  ++  +++    R +   + L++++D+ +L+    +T       L++
Sbjct: 182 LSPRVGRFLLSHCRRDMASLQALLEELDHASLAAKRRLTVPFIKGYLED 230


>gi|315292418|gb|EFU51770.1| DnaA regulatory inactivator Hda [Escherichia coli MS 153-1]
          Length = 260

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 29  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 88

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 89  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 148

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 149 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 208

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 209 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 259


>gi|167624256|ref|YP_001674550.1| DNA replication initiation factor [Shewanella halifaxensis HAW-EB4]
 gi|167354278|gb|ABZ76891.1| Chromosomal replication initiator DnaA [Shewanella halifaxensis
           HAW-EB4]
          Length = 236

 Score =  164 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 90/234 (38%), Gaps = 18/234 (7%)

Query: 23  NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSC 79
           N   QL      P     +       +  ++ ++ + +         V L GP  SG++ 
Sbjct: 4   NSPLQLSLPVHLPDDETFNS--YYPAAGNDELIQSLQACAEGRAEGAVFLWGPEKSGRTH 61

Query: 80  LANIWSDKSRSTR---------FSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127
           L +     +                   +     ++    V ++D++ +  +   +  +F
Sbjct: 62  LMHAACAHANDLGRSSFYIPLGIHASISTALLEGLEKLDLVCIDDVNAIAGHPLWEEAIF 121

Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            + N I +    SL+++A   P   G  LPDL SR++     ++    D+     + +  
Sbjct: 122 DLYNRISEQKTCSLIVSASVSPSDSGFSLPDLVSRMQWGLNYQLQPMADEEKLAALQRRA 181

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           A R + + + +  +++ R+ R L     ++D++D  ++     +T     E+L+
Sbjct: 182 AMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQRKLTIPFIKEMLR 235


>gi|118580735|ref|YP_901985.1| chromosomal replication initiator, DnaA [Pelobacter propionicus DSM
           2379]
 gi|118503445|gb|ABK99927.1| Chromosomal replication initiator, DnaA [Pelobacter propionicus DSM
           2379]
          Length = 236

 Score =  164 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 14/227 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLANI 83
            Q    FP     + D  +V      AVR        S P R++ L GP GSGK+ L   
Sbjct: 1   MQQILEFPVSSSCTFDSFVVCDGNAAAVRFARRITDESEPERLLYLHGPPGSGKTHLLRA 60

Query: 84  WS-DKSRSTRFSNIAKSLDSILID--------TRKPVLLEDIDLLDFND---TQLFHIIN 131
            + + +          S   +             + ++++D+ LL  +      L+ + N
Sbjct: 61  IALELAGGNPDQAPYLSCRDVRSARSLVDRFHGAQGLVVDDLQLLPDSQDLRAALWQLFN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
             H+   ++++     P         L SRL    V ++   DD     ++ K+  DRQ+
Sbjct: 121 DFHEAGRAVVLAGLHPPRMLPHLDDHLVSRLLWGLVARVDASDDLSRRMILKKIADDRQV 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
            +   +  YI+    R +       + +   +L+    IT +LA E 
Sbjct: 181 RVPDDVVEYIMVTTSREVGELIGFFETIYRFSLAHKRRITLALAREA 227


>gi|225077364|ref|ZP_03720563.1| hypothetical protein NEIFLAOT_02424 [Neisseria flavescens
           NRL30031/H210]
 gi|319638485|ref|ZP_07993247.1| DnaA-like protein [Neisseria mucosa C102]
 gi|224951292|gb|EEG32501.1| hypothetical protein NEIFLAOT_02424 [Neisseria flavescens
           NRL30031/H210]
 gi|317400234|gb|EFV80893.1| DnaA-like protein [Neisseria mucosa C102]
          Length = 222

 Score =  164 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F        D  L  +   + V ++        + + + G  G+GKS L   W  
Sbjct: 3   QLIFDFASHDYPGFDKFL-GTENAELVYVLQHK---HGQFIYVWGEEGAGKSHLLQAWVA 58

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      A  L    +D  + + ++ I+ L+  +  L F I N         
Sbjct: 59  QALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEKLNNEEQALLFAIFNRFRNSGKGF 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+ +  +     V   DL +R+    V ++    D      +V M A RQ+ ID ++  Y
Sbjct: 118 LLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDREKIDALVSMAAARQVTIDPEIFEY 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           ++    R +    +++D +DN A+  G  IT  L  ++LK+ +
Sbjct: 178 LLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLRQLLKQQE 220


>gi|261855342|ref|YP_003262625.1| DnaA regulatory inactivator Hda [Halothiobacillus neapolitanus c2]
 gi|261835811|gb|ACX95578.1| DnaA regulatory inactivator Hda [Halothiobacillus neapolitanus c2]
          Length = 233

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81
            K +Q+          S D  +          LI           + + G    GK+ LA
Sbjct: 5   GKMQQIPLDLALNAPHSLDGFI-GVENLLLRALITQLALGRGEAQLFIHGAQNCGKTHLA 63

Query: 82  NIWSDKSRSTRFSNIAKS-------LDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIIN 131
                 +     S            LD + +     ++L+D+D L  +D     LF +IN
Sbjct: 64  QAACFYAGQQGRSAAYIDVKKNPSQLDHMNLSHIDLLVLDDVDALAGDDQGEFLLFDLIN 123

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
            + + +  LLMTA   P + G  LPDL SRL     + I  P++    +++ +   +R  
Sbjct: 124 RLREQEIPLLMTASLPPAACGFQLPDLLSRLGWGITMLIHAPNEAEKIELLRRKAQERGF 183

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +  + A Y++QR  R L    K++  +D+ +LS    +T      VL
Sbjct: 184 DLPFESAVYLLQRSPRDLGSLLKIIQDLDHASLSAQRKLTIPFVRSVL 231


>gi|261380274|ref|ZP_05984847.1| DnaA regulatory inactivator Hda [Neisseria subflava NJ9703]
 gi|284797135|gb|EFC52482.1| DnaA regulatory inactivator Hda [Neisseria subflava NJ9703]
          Length = 222

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F        D  L  +   + V ++        + + + G  G+GKS L   W  
Sbjct: 3   QLIFDFASHDYPGFDKFL-GTENAELVYVLQHK---HGQCIYVWGEEGAGKSHLLQAWVA 58

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      A  L    +D  + + ++ I+ L+  +  L F I N         
Sbjct: 59  QALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEKLNNEEQALLFAIFNRFRNSGKGF 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+ +  +     V   DL +R+    V ++    D      +V M A RQ+ ID ++  Y
Sbjct: 118 LLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDREKIDALVSMAAARQVTIDPEIFEY 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           ++    R +    +++D +DN A+  G  IT  L  ++LK+ +
Sbjct: 178 LLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLRQLLKQQE 220


>gi|241759926|ref|ZP_04758026.1| DnaA regulatory inactivator Hda [Neisseria flavescens SK114]
 gi|241319934|gb|EER56330.1| DnaA regulatory inactivator Hda [Neisseria flavescens SK114]
          Length = 222

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F        D  L  +   + V ++        + + + G  G+GKS L   W  
Sbjct: 3   QLIFDFASHDYPGFDKFL-GTENAELVYVLQHK---HGQFIYVWGEEGAGKSHLLRAWVA 58

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      A  L    +D  + + ++ I+ L+  +  L F I N         
Sbjct: 59  QALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEKLNNEEQALLFAIFNRFRNSGKGF 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+ +  +     V   DL +R+    V ++    D      +V M A RQ+ ID ++  Y
Sbjct: 118 LLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDREKIDALVSMAAARQVTIDPEIFEY 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           ++    R +    +++D +DN A+  G  IT  L  ++LK+ +
Sbjct: 178 LLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLRQLLKQQE 220


>gi|325577813|ref|ZP_08148088.1| DnaA regulatory inactivator Hda [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160558|gb|EGC72684.1| DnaA regulatory inactivator Hda [Haemophilus parainfluenzae ATCC
           33392]
          Length = 231

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 15/228 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIW 84
           +QL     +    + ++          +  +  +      +   L G    GK+ L    
Sbjct: 3   QQLSLPIHQIDDETLENFY-SDNNALLLNSLRQNMTDLQQQFFYLWGSQSVGKTHLLRAL 61

Query: 85  SDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLEDIDLLDFN---DTQLFHIINS 132
            ++    + S I   L             ++ ++ V L+D+  +  N   +  LF + N 
Sbjct: 62  CNEYIQQQRSAIYVPLSKSQYFSTAVFENLEQQELVCLDDLQTIIGNSEWEIALFDLFNR 121

Query: 133 IHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           I     +LL+ +A   P S  V LPDL SRLK     ++    D+    V+ +    R I
Sbjct: 122 IKTNGKTLLVVSADQSPTSLPVKLPDLASRLKWGESYQLIPLSDEQKFAVLKQNAHQRGI 181

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +    A +I  R++R +   ++ + ++D  +L     +T      +L
Sbjct: 182 ILSDDTANFIFTRLDRDMATLKEALVQLDKASLQAKRNLTIPFVKSIL 229


>gi|301046372|ref|ZP_07193533.1| DnaA regulatory inactivator Hda [Escherichia coli MS 185-1]
 gi|300301654|gb|EFJ58039.1| DnaA regulatory inactivator Hda [Escherichia coli MS 185-1]
          Length = 269

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 38  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 97

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 98  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 157

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 158 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 217

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 218 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 268


>gi|261377806|ref|ZP_05982379.1| DnaA regulatory inactivator Hda [Neisseria cinerea ATCC 14685]
 gi|269146107|gb|EEZ72525.1| DnaA regulatory inactivator Hda [Neisseria cinerea ATCC 14685]
          Length = 222

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 11/224 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F      S D  L  +   + V ++        + + + G  G+GKS L   W  
Sbjct: 3   QLIFDFAAHDYPSFDKFL-GTENAELVYVLQHK---HGQFIYVWGEEGAGKSHLLQAWVA 58

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      A+ L    +D    + ++ ++ L   +  L F I N         
Sbjct: 59  QALEAGKNAVYVDAAAEPLTDSALDA-DYLAIDQVEKLGNEEQALLFSIFNRFRNSGKGF 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+          V   DL +R+    V ++    D      +V M A RQ+ ID ++  Y
Sbjct: 118 LLLGSESTPQQLVIREDLRTRMAYCLVYEVKSLTDREKIDALVSMAAARQVTIDPEIFEY 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++    R +     ++D +DN A++ G  IT  L  ++LK+ + 
Sbjct: 178 LLNHWRRDMDSLMDMLDTLDNYAVTMGKRITLPLLRQLLKQQEN 221


>gi|212635540|ref|YP_002312065.1| DNA replication initiation factor [Shewanella piezotolerans WP3]
 gi|212557024|gb|ACJ29478.1| DNA replication factor, putative [Shewanella piezotolerans WP3]
          Length = 236

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 89/234 (38%), Gaps = 18/234 (7%)

Query: 23  NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSC 79
           N   QL      P     +       +  ++ ++ + +         V + GP  SG++ 
Sbjct: 4   NSPLQLSLPVHLPDDETFNS--YYPAAGNDELIQSLQACAEGRAEGAVFIWGPEKSGRTH 61

Query: 80  LANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127
           L +     +                         ++    V ++D++ +  +   +  +F
Sbjct: 62  LMHAACAHANDLNRSSFYIPLGIHASISPALLEGLEKIDLVCIDDVNAIAGHPLWEEAIF 121

Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            + N I +    SL+++A   P   G  LPDL SR++     ++    DD     + +  
Sbjct: 122 DLYNRISEQKTCSLVLSASVSPSETGFALPDLISRMQWGLNYQLQPMADDEKLAALQRRA 181

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           A R + + + +  +++ R+ R L     ++D++D  ++     +T     E+L+
Sbjct: 182 AMRGLQLSEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQRKLTIPFIKEMLR 235


>gi|157375578|ref|YP_001474178.1| DNA replication initiation factor [Shewanella sediminis HAW-EB3]
 gi|157317952|gb|ABV37050.1| chromosomal replication initiator, DnaA [Shewanella sediminis
           HAW-EB3]
          Length = 236

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 93/234 (39%), Gaps = 18/234 (7%)

Query: 23  NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSC 79
           N   QL      P     +       +  ++ ++ + +       R V L GP  SG++ 
Sbjct: 4   NSPLQLSLPVHLPDDETFNS--YYPAAGNDELIQSLQACAEGRADRSVFLWGPVKSGRTH 61

Query: 80  LANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127
           L +     +                    +    ++    + ++D+D +  +   +  +F
Sbjct: 62  LMHAACAHANDLERSSFYLPLGIHASISPMLLEGLEQLDLICIDDVDAIAGHPLWEEAIF 121

Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            + N + ++D  SL+++A   P   G  LPDL SR++     ++    DD     + +  
Sbjct: 122 DLYNRVSEHDNCSLIVSASVSPNDSGFALPDLVSRMQWGLNYQLQPMADDEKLAALQRRA 181

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           A R + + + +  +++ R+ R L     ++D++D  +L     +T     E+L+
Sbjct: 182 AMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKDSLVHQRKLTIPFVKEMLR 235


>gi|300951801|ref|ZP_07165615.1| DnaA regulatory inactivator Hda [Escherichia coli MS 116-1]
 gi|301024719|ref|ZP_07188362.1| DnaA regulatory inactivator Hda [Escherichia coli MS 69-1]
 gi|300396450|gb|EFJ79988.1| DnaA regulatory inactivator Hda [Escherichia coli MS 69-1]
 gi|300448964|gb|EFK12584.1| DnaA regulatory inactivator Hda [Escherichia coli MS 116-1]
          Length = 256

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 25  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 84

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 85  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 144

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 145 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 204

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 205 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 255


>gi|324008594|gb|EGB77813.1| DnaA regulatory inactivator Hda [Escherichia coli MS 57-2]
          Length = 257

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 26  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 85

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 86  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 145

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 146 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 205

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 206 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256


>gi|325916438|ref|ZP_08178710.1| regulatory inactivation of DnaA Hda protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537358|gb|EGD09082.1| regulatory inactivation of DnaA Hda protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 233

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 90/230 (39%), Gaps = 19/230 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82
           QL  +         D  +        +           W    + L GP+G+GK+ LA  
Sbjct: 5   QLPLALRAPSDQRFDSYIAAPEGLLAQLQALAAGQVSDW----LYLAGPAGTGKTHLALA 60

Query: 83  IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
           + +   ++ R          A  L   L  ++ R  V L+ +D +     ++  LF   N
Sbjct: 61  VCAAAEQAGRATAYLPLQAAAGRLRDALEALEGRSLVALDGVDSIAGQRDDEVALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                 +SLL TAR  P    + LPDL SRL     + + +PDD     V+      R +
Sbjct: 121 RARAAGTSLLYTARQMPDGLALILPDLRSRLSQCIRIGLPVPDDAARAAVLRDRAQRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +D     +++   ER L     L++++D  +L+    IT      VL++
Sbjct: 181 ALDDAAIDWLLTHSERELATLVALLERLDRESLAAKRRITVPFLRRVLED 230


>gi|307544884|ref|YP_003897363.1| K10763 DnaA-homolog protein [Halomonas elongata DSM 2581]
 gi|307216908|emb|CBV42178.1| K10763 DnaA-homolog protein [Halomonas elongata DSM 2581]
          Length = 233

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 16/231 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
               QL          +  +     +      L           + L G  G G+S L  
Sbjct: 3   RAPAQLPLGVGLRDDATFANFYPGPSATLVACLKHQLEESGEPFLYLWGADGVGRSHLLQ 62

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--------------DTQLFH 128
                +       +   L+   +    P++LE+++ LD                +  LFH
Sbjct: 63  AACHAASDQDRRALYLPLEE--LGHFPPLMLEEVERLDLLAIDDLDRVVGRKRWEEALFH 120

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N +      L++ A   P    V LPDL SRL      ++   DD    + +      
Sbjct: 121 AFNRLRDDGRRLIVAASAPPRQLAVTLPDLASRLTWGMTFQVPGLDDQGRLEALRLRAGG 180

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R + +  ++A YI+ R  R L    ++++ +D  +LS    +T     + L
Sbjct: 181 RGMELPDEVARYILHRGPRRLEALFEVLETLDRASLSAQRKLTIPFVKQAL 231


>gi|300903508|ref|ZP_07121433.1| DnaA regulatory inactivator Hda [Escherichia coli MS 84-1]
 gi|300930133|ref|ZP_07145555.1| DnaA regulatory inactivator Hda [Escherichia coli MS 187-1]
 gi|300404540|gb|EFJ88078.1| DnaA regulatory inactivator Hda [Escherichia coli MS 84-1]
 gi|300461977|gb|EFK25470.1| DnaA regulatory inactivator Hda [Escherichia coli MS 187-1]
 gi|315300454|gb|EFU59684.1| DnaA regulatory inactivator Hda [Escherichia coli MS 16-3]
          Length = 255

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 24  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 83

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 84  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 143

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 144 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 203

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 204 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 254


>gi|324011194|gb|EGB80413.1| DnaA regulatory inactivator Hda [Escherichia coli MS 60-1]
          Length = 274

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 43  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 102

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 103 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 162

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 163 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 222

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 223 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 273


>gi|218768138|ref|YP_002342650.1| DnaA regulatory inactivator Hda [Neisseria meningitidis Z2491]
 gi|121052146|emb|CAM08463.1| hypothetical protein NMA1279 [Neisseria meningitidis Z2491]
 gi|254671090|emb|CBA08030.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|319410380|emb|CBY90734.1| DnaA-homolog protein Hda [Neisseria meningitidis WUE 2594]
          Length = 243

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F      S D  L  +   + V ++        + + + G  G+GKS L   W  
Sbjct: 24  QLIFDFAAHDYPSFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 79

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      +  L     +  + + ++ ++ L   +  L F I N         
Sbjct: 80  QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 138

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+    +     V   DL +R+    V ++    D      +  M A RQ+ +D ++  Y
Sbjct: 139 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 198

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +++   R +     ++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 199 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 241


>gi|149378135|ref|ZP_01895854.1| DNA replication initiation factor [Marinobacter algicola DG893]
 gi|149357580|gb|EDM46083.1| DNA replication initiation factor [Marinobacter algicola DG893]
          Length = 238

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 96/236 (40%), Gaps = 15/236 (6%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGS 75
            D+      QL            D+         A   + S    +    V+ + G + +
Sbjct: 2   EDKKAVSASQLVLGVKLRDDARFDNFH-GGRNADAAARLKSACEQAGAVPVIAVCGDADT 60

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFND--- 123
           GKS L       +   + S+I  S++ +L         ++ +  + L+D+DL+   +   
Sbjct: 61  GKSHLLQAACHLAEQNQQSSICVSMEELLPLGPDSLSGLEGQSVICLDDLDLIAGQENWE 120

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
             +FH+ N ++ +   ++++    P S    L DL SRL     +++ +  DD   ++++
Sbjct: 121 EAIFHLYNRVNDHGHLMVVSLSELPASLPFGLQDLVSRLSHGLTIQLGIHRDDDRLRILM 180

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                R + +   +A +I++R  R L     ++D++D  +L     +T      VL
Sbjct: 181 ARAEQRGLVLSDDVAVFILRRAPRKLADLLAILDRLDENSLRAQRRLTIPFVKSVL 236


>gi|78048657|ref|YP_364832.1| hypothetical protein XCV3101 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037087|emb|CAJ24832.1| replication related protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 235

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 19/235 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82
           QL  +         D  +        +           W    + L GP+G+GK+ LA +
Sbjct: 5   QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGHVSDW----LYLSGPAGTGKTHLALS 60

Query: 83  IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
           + +   ++ R          A  L   L  ++ R  V L+ ++ +     ++  LF   N
Sbjct: 61  LCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRGLVALDGVESIAGRRDDEVALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  +LL TAR  P    + LPDL SRL     + + + DD     V+      R +
Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDAARGAVLRDRAQRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            +D+    +++   ER L     L+D++D  +L+    IT      V+      +
Sbjct: 181 ALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAKRRITVPFLRRVVAGMPGPE 235


>gi|85374595|ref|YP_458657.1| ATPase [Erythrobacter litoralis HTCC2594]
 gi|84787678|gb|ABC63860.1| ATPase [Erythrobacter litoralis HTCC2594]
          Length = 209

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 24/223 (10%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           +  Q+          +   ++V +A  + +  +    +WP    IL+GP  SGKS L   
Sbjct: 6   RFSQIALPLAHGHSSNPAAIVVGNANARIIEALAEPSAWPFGTAILMGPPRSGKSLLGRW 65

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
             ++ ++T                    +++  D     +T LFH  N   Q    LL+ 
Sbjct: 66  VEEQGKAT--------------------VIDGADSES--ETTLFHRWNRAQQNGEKLLLI 103

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           A     SW + LPDL SRL AA  V+I  PDD  L  +++     R + + +    Y++ 
Sbjct: 104 ADG--ESWHITLPDLKSRLGAALHVEIGTPDDAMLGDLVLSHATRRGLALGEDALTYLIP 161

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           R  RS    EKLV  +D L+L R +  T  +  + L+  Q  +
Sbjct: 162 RATRSFADIEKLVGHIDRLSLERKVAPTLGIWRDALEAVQGPE 204


>gi|300981824|ref|ZP_07175756.1| DnaA regulatory inactivator Hda [Escherichia coli MS 45-1]
 gi|300408901|gb|EFJ92439.1| DnaA regulatory inactivator Hda [Escherichia coli MS 45-1]
          Length = 256

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 25  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 84

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 85  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 144

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 145 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 204

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 205 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 255


>gi|90020543|ref|YP_526370.1| regulatory inactivation of DnaA Hda protein [Saccharophagus
           degradans 2-40]
 gi|89950143|gb|ABD80158.1| regulatory inactivation of DnaA Hda protein [Saccharophagus
           degradans 2-40]
          Length = 239

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLVH-SAIEQAVRLIDSWPSWPSRVVIL-VGPSGSGKSCLAN 82
             QL          +  + L    +  Q V  +  + +      +L  G  GSG + L  
Sbjct: 8   PVQLSLGVSLREETTFANFLGAVGSNAQPVAALQQFAANEGEQNVLVWGAPGSGLTHLLQ 67

Query: 83  IWSDKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDIDLLDF---NDTQLFHI 129
               ++     +     L  ++          ++  + V L+ ID +      +  +FH+
Sbjct: 68  AVCHRAYEHGLAVQYLPLQDMVGYDAQSICDGLEQMQVVCLDGIDHICGIKSWEQGVFHL 127

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++      LL+ + T P +  + LPDL SR+  +    +   +D   +  ++     R
Sbjct: 128 YNNLRDAGHRLLIASHTSPPALPLTLPDLKSRVLGSVRYHVESLNDLQKQDALIARAVAR 187

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            + +  ++A +I+ R  R       L+D++D+ +L +   +T   A EVL 
Sbjct: 188 GMDMPVEVARFILNRASRDTNELFYLLDQLDDASLQKQRKLTVPFAKEVLN 238


>gi|300897622|ref|ZP_07116027.1| DnaA regulatory inactivator Hda [Escherichia coli MS 198-1]
 gi|300997976|ref|ZP_07181907.1| DnaA regulatory inactivator Hda [Escherichia coli MS 200-1]
 gi|301329019|ref|ZP_07222046.1| DnaA regulatory inactivator Hda [Escherichia coli MS 78-1]
 gi|301644486|ref|ZP_07244483.1| DnaA regulatory inactivator Hda [Escherichia coli MS 146-1]
 gi|300304077|gb|EFJ58597.1| DnaA regulatory inactivator Hda [Escherichia coli MS 200-1]
 gi|300358622|gb|EFJ74492.1| DnaA regulatory inactivator Hda [Escherichia coli MS 198-1]
 gi|300844653|gb|EFK72413.1| DnaA regulatory inactivator Hda [Escherichia coli MS 78-1]
 gi|301077231|gb|EFK92037.1| DnaA regulatory inactivator Hda [Escherichia coli MS 146-1]
          Length = 257

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 26  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 85

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 86  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 145

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 146 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 205

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 206 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256


>gi|15803019|ref|NP_289049.1| DNA replication initiation factor [Escherichia coli O157:H7 EDL933]
 gi|15832612|ref|NP_311385.1| DNA replication initiation factor [Escherichia coli O157:H7 str.
           Sakai]
 gi|24113824|ref|NP_708334.1| DNA replication initiation factor [Shigella flexneri 2a str. 301]
 gi|26248855|ref|NP_754895.1| DNA replication initiation factor [Escherichia coli CFT073]
 gi|30063870|ref|NP_838041.1| DNA replication initiation factor [Shigella flexneri 2a str. 2457T]
 gi|74313022|ref|YP_311441.1| DNA replication initiation factor [Shigella sonnei Ss046]
 gi|82544943|ref|YP_408890.1| DNA replication initiation factor [Shigella boydii Sb227]
 gi|89109302|ref|AP_003082.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K-12 substr. W3110]
 gi|91211817|ref|YP_541803.1| DNA replication initiation factor [Escherichia coli UTI89]
 gi|110642658|ref|YP_670388.1| DNA replication initiation factor [Escherichia coli 536]
 gi|110806426|ref|YP_689946.1| DNA replication initiation factor [Shigella flexneri 5 str. 8401]
 gi|117624680|ref|YP_853593.1| DNA replication initiation factor [Escherichia coli APEC O1]
 gi|157158460|ref|YP_001463818.1| DNA replication initiation factor [Escherichia coli E24377A]
 gi|157161957|ref|YP_001459275.1| DNA replication initiation factor [Escherichia coli HS]
 gi|168748446|ref|ZP_02773468.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4113]
 gi|168756267|ref|ZP_02781274.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4401]
 gi|168761104|ref|ZP_02786111.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4501]
 gi|168768587|ref|ZP_02793594.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4486]
 gi|168778461|ref|ZP_02803468.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4076]
 gi|168787841|ref|ZP_02812848.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC869]
 gi|170019220|ref|YP_001724174.1| DNA replication initiation factor [Escherichia coli ATCC 8739]
 gi|170082106|ref|YP_001731426.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170684093|ref|YP_001744679.1| DNA replication initiation factor [Escherichia coli SMS-3-5]
 gi|187733723|ref|YP_001881287.1| DNA replication initiation factor [Shigella boydii CDC 3083-94]
 gi|188495904|ref|ZP_03003174.1| DnaA family protein Hda [Escherichia coli 53638]
 gi|191169203|ref|ZP_03030958.1| DnaA family protein Hda [Escherichia coli B7A]
 gi|191172946|ref|ZP_03034481.1| DnaA family protein Hda [Escherichia coli F11]
 gi|193064697|ref|ZP_03045775.1| DnaA family protein Hda [Escherichia coli E22]
 gi|193068417|ref|ZP_03049380.1| DnaA family protein Hda [Escherichia coli E110019]
 gi|194427342|ref|ZP_03059892.1| DnaA family protein Hda [Escherichia coli B171]
 gi|194437674|ref|ZP_03069770.1| DnaA family protein Hda [Escherichia coli 101-1]
 gi|195936639|ref|ZP_03082021.1| DNA replication initiation factor [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808962|ref|ZP_03251299.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4206]
 gi|208813090|ref|ZP_03254419.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4045]
 gi|208820209|ref|ZP_03260529.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4042]
 gi|209400783|ref|YP_002271965.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4115]
 gi|209919973|ref|YP_002294057.1| DNA replication initiation factor [Escherichia coli SE11]
 gi|215487788|ref|YP_002330219.1| DNA replication initiation factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327019|ref|ZP_03443102.1| DnaA family protein Hda [Escherichia coli O157:H7 str. TW14588]
 gi|218555021|ref|YP_002387934.1| DNA replication initiation factor [Escherichia coli IAI1]
 gi|218559420|ref|YP_002392333.1| DNA replication initiation factor [Escherichia coli S88]
 gi|218690611|ref|YP_002398823.1| DNA replication initiation factor [Escherichia coli ED1a]
 gi|218696123|ref|YP_002403790.1| DNA replication initiation factor [Escherichia coli 55989]
 gi|218700953|ref|YP_002408582.1| DNA replication initiation factor [Escherichia coli IAI39]
 gi|218705995|ref|YP_002413514.1| DNA replication initiation factor [Escherichia coli UMN026]
 gi|227887525|ref|ZP_04005330.1| DNA replication initiation protein A [Escherichia coli 83972]
 gi|237705002|ref|ZP_04535483.1| DNA replication initiation factor [Escherichia sp. 3_2_53FAA]
 gi|238901661|ref|YP_002927457.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli BW2952]
 gi|253772612|ref|YP_003035443.1| DNA replication initiation factor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162470|ref|YP_003045578.1| DNA replication initiation factor [Escherichia coli B str. REL606]
 gi|254794441|ref|YP_003079278.1| DNA replication initiation factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017356|ref|ZP_05431221.1| DNA replication initiation factor [Shigella sp. D9]
 gi|256021818|ref|ZP_05435683.1| DNA replication initiation factor [Escherichia sp. 4_1_40B]
 gi|260845126|ref|YP_003222904.1| ATPase regulatory factor Hda [Escherichia coli O103:H2 str. 12009]
 gi|260856590|ref|YP_003230481.1| ATPase regulatory factor Hda [Escherichia coli O26:H11 str. 11368]
 gi|261223071|ref|ZP_05937352.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261259377|ref|ZP_05951910.1| ATPase regulatory factor Hda [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283716|ref|YP_003500534.1| DnaA-like protein hda [Escherichia coli O55:H7 str. CB9615]
 gi|300817738|ref|ZP_07097953.1| DnaA regulatory inactivator Hda [Escherichia coli MS 107-1]
 gi|300820837|ref|ZP_07100987.1| DnaA regulatory inactivator Hda [Escherichia coli MS 119-7]
 gi|300921429|ref|ZP_07137789.1| DnaA regulatory inactivator Hda [Escherichia coli MS 115-1]
 gi|301023882|ref|ZP_07187613.1| DnaA regulatory inactivator Hda [Escherichia coli MS 196-1]
 gi|301302849|ref|ZP_07208977.1| DnaA regulatory inactivator Hda [Escherichia coli MS 124-1]
 gi|306814438|ref|ZP_07448600.1| DNA replication initiation factor [Escherichia coli NC101]
 gi|307139130|ref|ZP_07498486.1| DNA replication initiation factor [Escherichia coli H736]
 gi|307312510|ref|ZP_07592143.1| DnaA regulatory inactivator Hda [Escherichia coli W]
 gi|309794460|ref|ZP_07688883.1| DnaA regulatory inactivator Hda [Escherichia coli MS 145-7]
 gi|331643113|ref|ZP_08344248.1| DnaA regulatory inactivator Hda [Escherichia coli H736]
 gi|331648141|ref|ZP_08349231.1| DnaA regulatory inactivator Hda [Escherichia coli M605]
 gi|331653921|ref|ZP_08354922.1| DnaA regulatory inactivator Hda [Escherichia coli M718]
 gi|331673947|ref|ZP_08374710.1| DnaA regulatory inactivator Hda [Escherichia coli TA280]
 gi|331678483|ref|ZP_08379158.1| DnaA regulatory inactivator Hda [Escherichia coli H591]
 gi|332278353|ref|ZP_08390766.1| DnaA family protein Hda [Shigella sp. D9]
 gi|12516884|gb|AAG57606.1|AE005479_4 putative DNA replication factor [Escherichia coli O157:H7 str.
           EDL933]
 gi|26109261|gb|AAN81463.1|AE016764_145 Hypothetical protein yfgE [Escherichia coli CFT073]
 gi|13362828|dbj|BAB36781.1| putative DNA replication factor [Escherichia coli O157:H7 str.
           Sakai]
 gi|24052912|gb|AAN44041.1| putative DNA replication factor [Shigella flexneri 2a str. 301]
 gi|30042125|gb|AAP17851.1| putative DNA replication factor [Shigella flexneri 2a str. 2457T]
 gi|73856499|gb|AAZ89206.1| putative DNA replication factor [Shigella sonnei Ss046]
 gi|81246354|gb|ABB67062.1| putative DNA replication factor [Shigella boydii Sb227]
 gi|85675427|dbj|BAA16384.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K12 substr. W3110]
 gi|91073391|gb|ABE08272.1| putative DNA replication factor [Escherichia coli UTI89]
 gi|110344250|gb|ABG70487.1| hypothetical protein YfgE [Escherichia coli 536]
 gi|110615974|gb|ABF04641.1| putative DNA replication factor [Shigella flexneri 5 str. 8401]
 gi|115513804|gb|ABJ01879.1| DNA replication initiation factor [Escherichia coli APEC O1]
 gi|157067637|gb|ABV06892.1| DnaA family protein Hda [Escherichia coli HS]
 gi|157080490|gb|ABV20198.1| DnaA family protein Hda [Escherichia coli E24377A]
 gi|169754148|gb|ACA76847.1| DnaA regulatory inactivator Hda [Escherichia coli ATCC 8739]
 gi|169889941|gb|ACB03648.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170521811|gb|ACB19989.1| DnaA family protein Hda [Escherichia coli SMS-3-5]
 gi|187430715|gb|ACD09989.1| DnaA family protein Hda [Shigella boydii CDC 3083-94]
 gi|188017019|gb|EDU55141.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4113]
 gi|188491103|gb|EDU66206.1| DnaA family protein Hda [Escherichia coli 53638]
 gi|189003293|gb|EDU72279.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4076]
 gi|189356555|gb|EDU74974.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4401]
 gi|189362259|gb|EDU80678.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4486]
 gi|189368411|gb|EDU86827.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4501]
 gi|189372386|gb|EDU90802.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC869]
 gi|190900748|gb|EDV60542.1| DnaA family protein Hda [Escherichia coli B7A]
 gi|190906810|gb|EDV66414.1| DnaA family protein Hda [Escherichia coli F11]
 gi|192927580|gb|EDV82196.1| DnaA family protein Hda [Escherichia coli E22]
 gi|192958369|gb|EDV88809.1| DnaA family protein Hda [Escherichia coli E110019]
 gi|194414663|gb|EDX30935.1| DnaA family protein Hda [Escherichia coli B171]
 gi|194423480|gb|EDX39471.1| DnaA family protein Hda [Escherichia coli 101-1]
 gi|208728763|gb|EDZ78364.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4206]
 gi|208734367|gb|EDZ83054.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4045]
 gi|208740332|gb|EDZ88014.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4042]
 gi|209162183|gb|ACI39616.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4115]
 gi|209763558|gb|ACI80091.1| putative DNA replication factor [Escherichia coli]
 gi|209763560|gb|ACI80092.1| putative DNA replication factor [Escherichia coli]
 gi|209763562|gb|ACI80093.1| putative DNA replication factor [Escherichia coli]
 gi|209763564|gb|ACI80094.1| putative DNA replication factor [Escherichia coli]
 gi|209763566|gb|ACI80095.1| putative DNA replication factor [Escherichia coli]
 gi|209913232|dbj|BAG78306.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215265860|emb|CAS10269.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217319386|gb|EEC27811.1| DnaA family protein Hda [Escherichia coli O157:H7 str. TW14588]
 gi|218352855|emb|CAU98654.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli 55989]
 gi|218361789|emb|CAQ99388.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli IAI1]
 gi|218366189|emb|CAR03935.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli S88]
 gi|218370939|emb|CAR18760.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli IAI39]
 gi|218428175|emb|CAR09089.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli ED1a]
 gi|218433092|emb|CAR13987.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli UMN026]
 gi|222034204|emb|CAP76945.1| DnaA-homolog protein hda [Escherichia coli LF82]
 gi|226901368|gb|EEH87627.1| DNA replication initiation factor [Escherichia sp. 3_2_53FAA]
 gi|227835875|gb|EEJ46341.1| DNA replication initiation protein A [Escherichia coli 83972]
 gi|238860037|gb|ACR62035.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli BW2952]
 gi|242378094|emb|CAQ32867.1| regulator of DnaA that prevents premature reinitiation of DNA
           replication [Escherichia coli BL21(DE3)]
 gi|253323656|gb|ACT28258.1| DnaA regulatory inactivator Hda [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974371|gb|ACT40042.1| DNA replication initiation factor [Escherichia coli B str. REL606]
 gi|253978538|gb|ACT44208.1| DNA replication initiation factor [Escherichia coli BL21(DE3)]
 gi|254593841|gb|ACT73202.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli O157:H7 str. TW14359]
 gi|257755239|dbj|BAI26741.1| ATPase regulatory factor Hda [Escherichia coli O26:H11 str. 11368]
 gi|257760273|dbj|BAI31770.1| ATPase regulatory factor Hda [Escherichia coli O103:H2 str. 12009]
 gi|260448425|gb|ACX38847.1| DnaA regulatory inactivator Hda [Escherichia coli DH1]
 gi|281179547|dbj|BAI55877.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|281601897|gb|ADA74881.1| DnaA-like protein hda [Shigella flexneri 2002017]
 gi|284922443|emb|CBG35530.1| DnaA-homolog protein [Escherichia coli 042]
 gi|290763589|gb|ADD57550.1| DnaA-like protein hda [Escherichia coli O55:H7 str. CB9615]
 gi|294493697|gb|ADE92453.1| DnaA family protein Hda [Escherichia coli IHE3034]
 gi|299880636|gb|EFI88847.1| DnaA regulatory inactivator Hda [Escherichia coli MS 196-1]
 gi|300411663|gb|EFJ94973.1| DnaA regulatory inactivator Hda [Escherichia coli MS 115-1]
 gi|300526590|gb|EFK47659.1| DnaA regulatory inactivator Hda [Escherichia coli MS 119-7]
 gi|300529726|gb|EFK50788.1| DnaA regulatory inactivator Hda [Escherichia coli MS 107-1]
 gi|300841784|gb|EFK69544.1| DnaA regulatory inactivator Hda [Escherichia coli MS 124-1]
 gi|305851832|gb|EFM52284.1| DNA replication initiation factor [Escherichia coli NC101]
 gi|306907433|gb|EFN37937.1| DnaA regulatory inactivator Hda [Escherichia coli W]
 gi|307554516|gb|ADN47291.1| DnaA family protein Hda [Escherichia coli ABU 83972]
 gi|307625952|gb|ADN70256.1| DNA replication initiation factor [Escherichia coli UM146]
 gi|308121916|gb|EFO59178.1| DnaA regulatory inactivator Hda [Escherichia coli MS 145-7]
 gi|309702774|emb|CBJ02105.1| DnaA-homolog protein [Escherichia coli ETEC H10407]
 gi|312947069|gb|ADR27896.1| DNA replication initiation factor [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315061814|gb|ADT76141.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli W]
 gi|315137119|dbj|BAJ44278.1| DnaA-like protein hda [Escherichia coli DH1]
 gi|315256513|gb|EFU36481.1| DnaA regulatory inactivator Hda [Escherichia coli MS 85-1]
 gi|320176256|gb|EFW51317.1| Chromosomal replication initiator protein DnaA [Shigella
           dysenteriae CDC 74-1112]
 gi|320180482|gb|EFW55413.1| Chromosomal replication initiator protein DnaA [Shigella boydii
           ATCC 9905]
 gi|320188828|gb|EFW63487.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC1212]
 gi|320196328|gb|EFW70952.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           WV_060327]
 gi|320200057|gb|EFW74646.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           EC4100B]
 gi|320641000|gb|EFX10484.1| DNA replication initiation factor [Escherichia coli O157:H7 str.
           G5101]
 gi|320646282|gb|EFX15209.1| DNA replication initiation factor [Escherichia coli O157:H- str.
           493-89]
 gi|320651787|gb|EFX20167.1| DNA replication initiation factor [Escherichia coli O157:H- str. H
           2687]
 gi|320657173|gb|EFX24982.1| DNA replication initiation factor [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662779|gb|EFX30111.1| DNA replication initiation factor [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667583|gb|EFX34498.1| DNA replication initiation factor [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323377605|gb|ADX49873.1| DnaA regulatory inactivator Hda [Escherichia coli KO11]
 gi|326340291|gb|EGD64095.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. 1125]
 gi|330912266|gb|EGH40776.1| chromosomal replication initiator protein DnaA [Escherichia coli
           AA86]
 gi|331039911|gb|EGI12131.1| DnaA regulatory inactivator Hda [Escherichia coli H736]
 gi|331043001|gb|EGI15141.1| DnaA regulatory inactivator Hda [Escherichia coli M605]
 gi|331048770|gb|EGI20846.1| DnaA regulatory inactivator Hda [Escherichia coli M718]
 gi|331069220|gb|EGI40612.1| DnaA regulatory inactivator Hda [Escherichia coli TA280]
 gi|331074943|gb|EGI46263.1| DnaA regulatory inactivator Hda [Escherichia coli H591]
 gi|332100705|gb|EGJ04051.1| DnaA family protein Hda [Shigella sp. D9]
 gi|332766306|gb|EGJ96516.1| dnaA regulatory inactivator Hda [Shigella flexneri 2930-71]
          Length = 248

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 17  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 76

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 77  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 136

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 137 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 196

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 197 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 247


>gi|300922203|ref|ZP_07138339.1| DnaA regulatory inactivator Hda [Escherichia coli MS 182-1]
 gi|300421442|gb|EFK04753.1| DnaA regulatory inactivator Hda [Escherichia coli MS 182-1]
 gi|324020097|gb|EGB89316.1| DnaA regulatory inactivator Hda [Escherichia coli MS 117-3]
          Length = 257

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 26  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 85

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 86  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 145

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 146 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 205

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 206 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256


>gi|300958876|ref|ZP_07170982.1| DnaA regulatory inactivator Hda [Escherichia coli MS 175-1]
 gi|300314478|gb|EFJ64262.1| DnaA regulatory inactivator Hda [Escherichia coli MS 175-1]
          Length = 274

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 43  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 102

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 103 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 162

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 163 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 222

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 223 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 273


>gi|82777875|ref|YP_404224.1| DNA replication initiation factor [Shigella dysenteriae Sd197]
 gi|81242023|gb|ABB62733.1| putative DNA replication factor [Shigella dysenteriae Sd197]
          Length = 248

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 17  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 76

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 77  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 136

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 137 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 196

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 197 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 247


>gi|71281837|ref|YP_269890.1| hypothetical protein CPS_3194 [Colwellia psychrerythraea 34H]
 gi|71147577|gb|AAZ28050.1| conserved hypothetical protein [Colwellia psychrerythraea 34H]
          Length = 235

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 22/231 (9%)

Query: 27  QLFF--SFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCL 80
           QL      P        D       +  V      I+S  S P     L G S  GKS L
Sbjct: 6   QLTLMVQLPDDETF---DSFKSDINQGVVTQLKSYIESQQSTPHSF-YLFGLSSVGKSHL 61

Query: 81  ANI---WSDKSRSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN---DTQLFH 128
            +    ++ +   +        L  +       ++    + L+DI L+  +      +F 
Sbjct: 62  MHASSTYAAQIGKSSVCLSCAELKQLPVEVLDGLEQIDLICLDDIHLIAGDTRWQQAIFD 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N + + ++ LL++        G+ LPDL SRL      ++   DD+     +      
Sbjct: 122 LFNRVLEQNNYLLISGDESAQQLGISLPDLVSRLTWGLTEQVKPVDDEEKVIALQYRATQ 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R +F+  ++  +++ R+ R +      +D +D  ++     IT     EVL
Sbjct: 182 RGLFLSDEVVKFLLNRLSRDMGSLINSLDVLDKASIQEQRKITIPFIKEVL 232


>gi|260869185|ref|YP_003235587.1| ATPase regulatory factor Hda [Escherichia coli O111:H- str. 11128]
 gi|257765541|dbj|BAI37036.1| ATPase regulatory factor Hda [Escherichia coli O111:H- str. 11128]
          Length = 248

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 17  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 76

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 77  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 136

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 137 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 196

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 197 GFELPEDVGRFLLKRLDREMRTLFITLDQLDRASITAQRKLTIPFVKEILK 247


>gi|322420884|ref|YP_004200107.1| Chromosomal replication initiator DnaA [Geobacter sp. M18]
 gi|320127271|gb|ADW14831.1| Chromosomal replication initiator DnaA [Geobacter sp. M18]
          Length = 235

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 91/233 (39%), Gaps = 18/233 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANI 83
            QL F FP       ++ +V    + A +      S      ++ + GP GSGK+ L   
Sbjct: 1   MQLIFDFPVVPRFCFENFVVCGGNKTAYQFAQRLASGGDTENLLYVYGPEGSGKTHLLTA 60

Query: 84  WSDKSRSTRFS--------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLF 127
            S +     FS                   L  +    +  +L +   L D+ +   +L+
Sbjct: 61  LSSECDGRYFSFRDAASLYCGNYRIEGPSRLAELFAGAKALILDDLDLLPDYQEVRVELW 120

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            + N+ +     + ++    P         L SRL    V ++ + DD+    ++ K+  
Sbjct: 121 ELFNAFYSAGKKIAISGLAPPKELPHLDGHLTSRLLWGLVARMDVSDDESRRMILKKLAE 180

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           DRQ+ +  ++   ++ ++ R +      ++ ++  A++    ++  LA E+ K
Sbjct: 181 DRQMTLPDEVIDEMLLKVRRDIPSLVYALETINRTAIATKRKVSLRLAKEIFK 233


>gi|127512766|ref|YP_001093963.1| DNA replication initiation factor [Shewanella loihica PV-4]
 gi|126638061|gb|ABO23704.1| regulatory inactivation of DnaA Hda protein [Shewanella loihica
           PV-4]
          Length = 236

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 94/234 (40%), Gaps = 18/234 (7%)

Query: 23  NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSC 79
           +   QL      P     +       +  ++ +  + +      ++ V L GP  +G++ 
Sbjct: 4   HSPVQLSLPVYLPDDETFNS--YYPAAGNDELILSLQASAEGRANKAVYLWGPVKAGRTH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127
           L +    ++     S+    L             ++    V ++D+D +  +   +  LF
Sbjct: 62  LMHATCARANELNRSSFYLPLGIHASISTELLEGLEQLDLVCIDDVDAIAGHPLWEEALF 121

Query: 128 HIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            + N + ++   +L+++A       G  LPDL SR++     ++    D+     + +  
Sbjct: 122 DLYNRVAEHKRCALVVSASATASDAGFALPDLVSRMQWGLTYQLQPMADEEKLAALQRRA 181

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           A R + + + +  +++ R+ R L     ++D++D  +L     +T     E+L+
Sbjct: 182 AMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASLVHQRKLTIPFVKEMLR 235


>gi|121634846|ref|YP_975091.1| hypothetical protein NMC1040 [Neisseria meningitidis FAM18]
 gi|161869962|ref|YP_001599131.1| DnaA regulatory inactivator Hda [Neisseria meningitidis 053442]
 gi|120866552|emb|CAM10302.1| hypothetical protein NMC1040 [Neisseria meningitidis FAM18]
 gi|161595515|gb|ABX73175.1| DnaA-related protein [Neisseria meningitidis 053442]
          Length = 243

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F      S D  L  +   + V ++        + + + G  G+GKS L   W  
Sbjct: 24  QLIFDFAAHDYPSFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 79

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      +  L     +  + + ++ ++ L   +  L F I N         
Sbjct: 80  QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 138

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+    +     V   DL +R+    V ++    D      +  M A RQ+ +D ++  Y
Sbjct: 139 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 198

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +++   R +     ++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 199 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 241


>gi|325926061|ref|ZP_08187424.1| regulatory inactivation of DnaA Hda protein [Xanthomonas perforans
           91-118]
 gi|325543519|gb|EGD14939.1| regulatory inactivation of DnaA Hda protein [Xanthomonas perforans
           91-118]
          Length = 235

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 19/234 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82
           QL  +         D  +        +           W    + L GP+G+GK+ LA +
Sbjct: 5   QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGHVSDW----LYLSGPAGTGKTHLALS 60

Query: 83  IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
           + +   ++ R          A  L   L  ++ R  V L+ ++ +     ++  LF   N
Sbjct: 61  LCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRGLVALDGVESIAGRRDDEVALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  +LL TAR  P    + LPDL SRL     + + + DD     V+      R +
Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDAARGAVLRDRAQRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +D+    +++   ER L     L+D++D  +L+    IT      V+      
Sbjct: 181 ALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAKRRITVPFLRRVVAGMPGP 234


>gi|254673821|emb|CBA09561.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 249

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F      S D  L  +   + V ++        + + + G  G+GKS L   W  
Sbjct: 30  QLIFDFAAHDYPSFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 85

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      +  L     +  + + ++ ++ L   +  L F I N         
Sbjct: 86  QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 144

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+    +     V   DL +R+    V ++    D      +  M A RQ+ +D ++  Y
Sbjct: 145 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 204

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +++   R +     ++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 205 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 247


>gi|254796578|ref|YP_003081414.1| hypothetical protein NRI_0184 [Neorickettsia risticii str.
           Illinois]
 gi|254589811|gb|ACT69173.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 179

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 7/169 (4%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT--Q 125
           +L G S SGK+ +  +W+ K  +   SN+ +     +        ++DID L   +    
Sbjct: 1   MLKGHSKSGKTHIGRVWASKHGADILSNLTEQAHFAI---HNHCFIDDIDKLTTQEEIEA 57

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           L HI NS  +    LLMT R+    +   LPDL SRL+A+    I  PDD+ L  V  K 
Sbjct: 58  LLHIYNSAIESGKILLMTTRSL--DFSDVLPDLSSRLRASITYSIPPPDDELLRVVTRKQ 115

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           F   Q  + +K+   ++QR++RSL      V  ++  AL +G  I+  L
Sbjct: 116 FYLYQTRVSEKVVNLVLQRVDRSLEAVVDFVALLNREALHKGKPISARL 164


>gi|190150693|ref|YP_001969218.1| hypothetical protein APP7_1424 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189915824|gb|ACE62076.1| hypothetical protein APP7_1424 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 246

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 98/233 (42%), Gaps = 20/233 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS- 85
           QL     +    + D+    +++     L  ++         + G   SGKS L    S 
Sbjct: 12  QLPLPIHQVDDETFDNFYAENSLVLLDSLRQNFIDVQQPFFYIWGGKSSGKSHLLKAVSN 71

Query: 86  -----DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDT---QLFHIINSIH 134
                 ++ S      ++    +++D  +    + L+DI ++  N+     +F++ N I 
Sbjct: 72  HYLLNQQTSSYIPLEKSQYFSPMVLDNAEQLDVICLDDIQIVAGNEEWELAIFNLFNLIR 131

Query: 135 Q--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           +        + + LL++A   P    + LPDL SRL    V +++   DD    ++ +  
Sbjct: 132 EQQSLFGNGHKTLLLISADCPPHQLQINLPDLRSRLTWGEVYQLNDLSDDQKRIILQRNA 191

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             + + +  ++A ++++R++R L      +D++D  +L     +T     E+L
Sbjct: 192 YQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKLTVPFVKEIL 244


>gi|254427815|ref|ZP_05041522.1| chromosomal replication initiator protein DnaA [Alcanivorax sp.
           DG881]
 gi|196193984|gb|EDX88943.1| chromosomal replication initiator protein DnaA [Alcanivorax sp.
           DG881]
          Length = 229

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 13/225 (5%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL  +     G + D+         AV  +        R        G GKS L      
Sbjct: 4   QLPLALQLREGNALDNFHAGP-NGAAVAGLHEAVEGVDRQAFFWAGDGQGKSHLLEGAVR 62

Query: 87  KSRSTRFSNIAKSLDSILI---------DTRKPVLLEDIDLLDF---NDTQLFHIINSIH 134
            ++             I+          +    + ++D  L       +  LFH+ N + 
Sbjct: 63  LAQHNGLDACLLPASEIIPLVPDVLESMEQFGLLAIDDCQLFAGLPAWEEALFHLYNRLM 122

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
                LL+TA   P + G+ LPDL +RL A  V ++   +D+ L+ ++ +    R + ++
Sbjct: 123 SLGGRLLVTANASPGAMGLMLPDLATRLAAGPVYRLMSLEDEDLQALLQERARARGLRLE 182

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            ++A YIV R ERS     +L+  +D LAL++   +T     + L
Sbjct: 183 PEVAHYIVLRSERSAGALMELLSDLDRLALAQQRSVTIPFVKDAL 227


>gi|145633314|ref|ZP_01789045.1| DNA replication initiation factor [Haemophilus influenzae 3655]
 gi|144986160|gb|EDJ92750.1| DNA replication initiation factor [Haemophilus influenzae 3655]
          Length = 231

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL     +    + ++    + +     L  +          + G  GSGK+ L   +S
Sbjct: 3   KQLPLPIHQIDDATLENFYGDNNLLLLDSLCKNSSELKQPFFYIWGDKGSGKTHLLRAFS 62

Query: 86  DKS----RSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSI 133
           ++     R+  +  ++KS          ++ ++ V L+D+  +  ND     +F + N I
Sbjct: 63  NEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIGNDEWELAIFDLFNRI 122

Query: 134 HQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
                +LL+ +A   P +  V LPDL SRL    + +++   D+   +V+      R   
Sbjct: 123 KASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQKVEVLQHTAYQRGFQ 182

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +  + A +++ R+ R +    + +D +D  +L     +T     E+L 
Sbjct: 183 LSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKEILN 230


>gi|218548071|ref|YP_002381862.1| DNA replication initiation factor [Escherichia fergusonii ATCC
           35469]
 gi|218355612|emb|CAQ88223.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           fergusonii ATCC 35469]
 gi|324112986|gb|EGC06962.1| DnaA regulatory inactivator Hda [Escherichia fergusonii B253]
 gi|325496474|gb|EGC94333.1| DNA replication initiation factor [Escherichia fergusonii ECD227]
          Length = 241

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 10  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 69

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 70  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEQLSLVCIDNIECIAGDELWEMAIFDLY 129

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 130 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 189

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 190 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 240


>gi|58580923|ref|YP_199939.1| hypothetical protein XOO1300 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622858|ref|YP_450230.1| hypothetical protein XOO_1201 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188578097|ref|YP_001915026.1| hypothetical protein PXO_02244 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58425517|gb|AAW74554.1| replication related protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366798|dbj|BAE67956.1| replication related protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188522549|gb|ACD60494.1| replication related protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 233

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 19/232 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82
           QL  +         D  +        +           W    + L GP+GSGK+ LA +
Sbjct: 5   QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGQVSDW----LYLSGPAGSGKTHLALS 60

Query: 83  IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
           + +   ++ R          A  L   L  ++ R  V L+ ++ +     ++  LF   N
Sbjct: 61  LCAAAEQAGRMSAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  +LL TAR  P    + LPDL SRL     + + + DD     V+      R +
Sbjct: 121 RARAAGITLLYTARQMPNGLALVLPDLRSRLSQCIRIGLPVLDDAARAAVLRDRAQRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            +D+    +++   ER L     L+D++D  +L+    IT      VL++ +
Sbjct: 181 AMDEAAIDWLLTHGERELARLVALLDRLDRESLAAKRRITVPFLRRVLEDRR 232


>gi|113869033|ref|YP_727522.1| DnaA regulatory inactivator Hda [Ralstonia eutropha H16]
 gi|113527809|emb|CAJ94154.1| ATPase involved in DNA replication initiation [Ralstonia eutropha
           H16]
          Length = 235

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 98/231 (42%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGK 77
           + +QL          + ++ +V ++  +AV+ +   P+         R+V L G  G G+
Sbjct: 4   RPKQLSLELGSPPPSTFENFVV-ASNREAVQRLRELPAALAQEHASDRLVYLWGEVGCGR 62

Query: 78  SCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIIN 131
           + L +   +       RS   S      D +     +   ++D++LLD      +F + N
Sbjct: 63  THLLHALCEAGPQHGIRSRYLSPHHPLSDFLFDPWCQLYTVDDVELLDEARQIAVFSLYN 122

Query: 132 SIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
            +  +  ++L++     P +  V   DL +RL    V +++   DD  +  ++    +R 
Sbjct: 123 EVRAHVRTALVVAGGLAPRAMPVR-EDLRTRLGWGLVYQVAPLSDDDKKAAVLHAARERG 181

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +  ++  ++V R  R +     L+D +D  +L R   +T  L  E+  E
Sbjct: 182 LQLSPEITHWLVTRHYRDMPSLMALLDALDTYSLERKRPVTLPLLREMFAE 232


>gi|261868685|ref|YP_003256607.1| DnaA regulatory inactivator Hda [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391763|ref|ZP_06636097.1| DnaA regulatory inactivator Hda [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|261414017|gb|ACX83388.1| DnaA regulatory inactivator Hda [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|290952297|gb|EFE02416.1| DnaA regulatory inactivator Hda [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 234

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 13/189 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114
            +   + G  GSGKS L         + +   +   L+            ++ +  V L+
Sbjct: 44  QQFFYIWGNRGSGKSHLLKAICHHYLTQQRPALYVPLNKAQYFSPAVLENLERQDVVCLD 103

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  N   +  +F +IN I +   +LL M A   P +    LPDL SRL    V ++
Sbjct: 104 DVQEVIGNAEWELAIFDLINRIRETGKTLLLMGADQSPANLAARLPDLHSRLTWGEVYQL 163

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
              DD     V+ +    R I +  + A ++ +R+ER +    + ++K+D  +L     +
Sbjct: 164 MPLDDAQKIAVLQENAHQRGIELPDETANFLFKRLERDMKTLFEALEKLDQASLQAQRKL 223

Query: 231 TRSLAAEVL 239
           T     E+L
Sbjct: 224 TIPFVKEIL 232


>gi|166711228|ref|ZP_02242435.1| hypothetical protein Xoryp_07090 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 233

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 19/232 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82
           QL  +         D  +        +           W    + L GP+GSGK+ LA +
Sbjct: 5   QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGQVSDW----LYLSGPAGSGKTHLALS 60

Query: 83  IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
           + +   ++ R          A  L   L  ++ R  V L+ ++ +     ++  LF   N
Sbjct: 61  LCAAAEQAGRMSAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  +LL TAR  P    + LPDL SRL     + + + DD     V+      R +
Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDAARAAVLRDRAQRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            +D+    +++   ER L     L+D++D  +L+    IT      VL++ +
Sbjct: 181 ALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRITVPFLRRVLEDRR 232


>gi|83644734|ref|YP_433169.1| DnaA family protein [Hahella chejuensis KCTC 2396]
 gi|83632777|gb|ABC28744.1| DnaA family protein [Hahella chejuensis KCTC 2396]
          Length = 232

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 87/230 (37%), Gaps = 12/230 (5%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVI-LVGPSGSGKSCL 80
           K++  Q+          + ++     +    V+ I  + +     V  + G S  GK+ L
Sbjct: 3   KSENTQMALRLSNGESATLENFFEPPS-GVVVQSIQRFFTASEDTVFSICGASAQGKTHL 61

Query: 81  ANIWSDKSRSTRFSNIAKS-------LDSILIDTRKPVLLEDIDLLDFN---DTQLFHII 130
                +  RS +   ++              +++   +  +DID +      +  LFH+ 
Sbjct: 62  LMAACNGFRSEKCFYLSLREYADFGVHVLAGLESFDVLCFDDIDAIAGQPEWEEALFHLF 121

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N   +     L+T+   P      LPDL +RL     V++   D+     V+    A+  
Sbjct: 122 NRCRERGCKWLITSAEAPSQTPFLLPDLKTRLAWGECVRLPELDEVQRINVLDIKAANIG 181

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             +  ++  YI++R  R L     +++++D  +L     IT      V+ 
Sbjct: 182 FRLSDEVKQYIMRRAPRDLSSLSLILERLDKASLVEKRPITVPFVKSVMN 231


>gi|283786112|ref|YP_003365977.1| DnaA-homolog protein [Citrobacter rodentium ICC168]
 gi|282949566|emb|CBG89184.1| DnaA-homolog protein [Citrobacter rodentium ICC168]
          Length = 248

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA 81
           N   QL          +             +  + +      S  + L    G+G+S L 
Sbjct: 17  NTPAQLSLPLYLPDDETFASFWPGD-NASLLAALQNVLRQEHSGYIYLWSREGAGRSHLL 75

Query: 82  NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129
           +        +  +  +  + K    +      ++    V +++I+ +  ++     +F +
Sbjct: 76  HAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEQLSLVCIDNIECVAGDELWEMAIFDL 135

Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      
Sbjct: 136 YNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARL 195

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 196 RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 247


>gi|226326465|ref|ZP_03801983.1| hypothetical protein PROPEN_00313 [Proteus penneri ATCC 35198]
 gi|225205064|gb|EEG87418.1| hypothetical protein PROPEN_00313 [Proteus penneri ATCC 35198]
          Length = 235

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 90/233 (38%), Gaps = 17/233 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCL 80
           N   QL          + D           V  I +    S     +      G GKS L
Sbjct: 4   NTPSQLSLPLSLPDDETFDSFYAGE-NASLVAAIRTAIHQS-HGSYIYFWSRDGGGKSHL 61

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        K  +  +  + K    +      ++    V ++++  +  ++     LF+
Sbjct: 62  LHAACAELSLKGDAVGYVPLDKRAYFVPDVLEGMEHLSLVCIDNVQCIAGDEEWELALFN 121

Query: 129 IINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N + ++  + LL+T    P    + LPDL SRL    + ++    D+   + +     
Sbjct: 122 LYNRVLEHGRTCLLITGDRPPRQIELQLPDLASRLDWGQIYRLQPLSDEEKIQALQLRAK 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            R   + + +  ++++R++R +    +++D++D+ ++     +T     ++LK
Sbjct: 182 LRGFELPEDVGRFVLKRLDRKMRTLFEMLDELDHASIVAQRKLTIPFVKDILK 234


>gi|237732473|ref|ZP_04562954.1| DNA replication initiation factor [Citrobacter sp. 30_2]
 gi|283832129|ref|ZP_06351870.1| DnaA regulatory inactivator Hda [Citrobacter youngae ATCC 29220]
 gi|226908012|gb|EEH93930.1| DNA replication initiation factor [Citrobacter sp. 30_2]
 gi|291071759|gb|EFE09868.1| DnaA regulatory inactivator Hda [Citrobacter youngae ATCC 29220]
          Length = 241

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 10  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWSREGAGRSHLLH 69

Query: 83  IWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHII 130
               +  +   +     LD            ++    V +++I+ +  +   +  +F + 
Sbjct: 70  AACAELSARGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECVAGDSLWEMAIFDLY 129

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 130 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 189

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 190 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240


>gi|269849587|sp|B7LKE6|HDA_ESCF3 RecName: Full=DnaA-homolog protein hda
          Length = 233

 Score =  161 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 2   NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 61

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 62  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEQLSLVCIDNIECIAGDELWEMAIFDLY 121

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 122 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 181

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 182 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 232


>gi|192361067|ref|YP_001982112.1| DnaA family protein [Cellvibrio japonicus Ueda107]
 gi|190687232|gb|ACE84910.1| DnaA family protein [Cellvibrio japonicus Ueda107]
          Length = 239

 Score =  161 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 84/232 (36%), Gaps = 17/232 (7%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSA---IEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCL 80
             QL          + D+    ++       V  +           V L G  G+G + L
Sbjct: 6   PRQLSLGVSLNDDATFDNFYAPASQHHNALVVDGLRRQVEGKAEAFVYLWGAPGAGLTHL 65

Query: 81  ANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-----------DTQLF 127
                   ++       +     +        V LE +DL+  +           +  +F
Sbjct: 66  LQASCHYAQTLGQSIQYLPLRDMAGYAPAELFVGLEALDLVCLDCLTSIAGRGDWELAIF 125

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           ++ N++      LL+ A   P    + L DL SRL+     ++    D+  ++ + K   
Sbjct: 126 NLYNALRDGGKKLLVAAEQSPRELPLQLEDLRSRLQWGVTYQVHSLSDEDKQQALQKRAR 185

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R + ++ ++A +I+QR+ R        + ++D  +L+    +T     +VL
Sbjct: 186 ARGLELNDEVAQFIIQRLPRDTNELFCQLQRLDQASLAEQRKLTIPFVKKVL 237


>gi|53728974|ref|ZP_00134440.2| COG0593: ATPase involved in DNA replication initiation
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208837|ref|YP_001054062.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           L20]
 gi|165976798|ref|YP_001652391.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303250541|ref|ZP_07336738.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253536|ref|ZP_07339675.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307246294|ref|ZP_07528375.1| hypothetical protein appser1_14980 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307248407|ref|ZP_07530430.1| hypothetical protein appser2_13830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250635|ref|ZP_07532575.1| hypothetical protein appser4_14110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307253015|ref|ZP_07534902.1| hypothetical protein appser6_15250 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255278|ref|ZP_07537093.1| hypothetical protein appser9_15130 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307257441|ref|ZP_07539210.1| hypothetical protein appser10_14380 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259713|ref|ZP_07541436.1| hypothetical protein appser11_15100 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261861|ref|ZP_07543525.1| hypothetical protein appser12_14200 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307264043|ref|ZP_07545643.1| hypothetical protein appser13_14480 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097629|gb|ABN74457.1| hypothetical protein APL_1373 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165876899|gb|ABY69947.1| ATPase involved in DNA replication initiation [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302647646|gb|EFL77863.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302650529|gb|EFL80688.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306852903|gb|EFM85127.1| hypothetical protein appser1_14980 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855145|gb|EFM87325.1| hypothetical protein appser2_13830 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857338|gb|EFM89454.1| hypothetical protein appser4_14110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306859544|gb|EFM91570.1| hypothetical protein appser6_15250 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861827|gb|EFM93806.1| hypothetical protein appser9_15130 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306864093|gb|EFM96007.1| hypothetical protein appser10_14380 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866253|gb|EFM98118.1| hypothetical protein appser11_15100 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868478|gb|EFN00291.1| hypothetical protein appser12_14200 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870654|gb|EFN02398.1| hypothetical protein appser13_14480 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 236

 Score =  161 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 20/234 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL     +    + D+    +++     L  ++         + G   SGKS L    S
Sbjct: 1   MQLPLPIHQVDDETFDNFYAENSLVLLDSLRQNFIDVQQPFFYIWGGKSSGKSHLLKAVS 60

Query: 86  ------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDT---QLFHIINSI 133
                  ++ S      ++    +++D  +    + L+DI ++  N+     +F++ N I
Sbjct: 61  NHYLLNQQTSSYIPLEKSQYFSPMVLDNAEQLDVICLDDIQIVAGNEEWELAIFNLFNLI 120

Query: 134 HQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            +        + + LL++A   P    + LPDL SRL    V +++   DD    ++ + 
Sbjct: 121 REQQSLFGNGHKTLLLISADCPPHQLQINLPDLRSRLTWGEVYQLNDLSDDQKRIILQRN 180

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + +  ++A ++++R++R L      +D++D  +L     +T     E+L
Sbjct: 181 AYQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKLTVPFVKEIL 234


>gi|226524737|ref|NP_416991.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K-12 substr. MG1655]
 gi|293405931|ref|ZP_06649923.1| DNA replication initiation factor [Escherichia coli FVEC1412]
 gi|293410891|ref|ZP_06654467.1| DnaA regulatory inactivator Hda [Escherichia coli B354]
 gi|293446849|ref|ZP_06663271.1| DnaA regulatory inactivator Hda [Escherichia coli B088]
 gi|298381680|ref|ZP_06991279.1| DNA replication initiation factor [Escherichia coli FVEC1302]
 gi|269849566|sp|A7ZPT9|HDA_ECO24 RecName: Full=DnaA-homolog protein hda
 gi|269849567|sp|B7UGN4|HDA_ECO27 RecName: Full=DnaA-homolog protein hda
 gi|269849568|sp|B7MHX7|HDA_ECO45 RecName: Full=DnaA-homolog protein hda
 gi|269849569|sp|B7LCN6|HDA_ECO55 RecName: Full=DnaA-homolog protein hda
 gi|269849570|sp|P69933|HDA_ECO57 RecName: Full=DnaA-homolog protein hda
 gi|269849571|sp|B5Z033|HDA_ECO5E RecName: Full=DnaA-homolog protein hda
 gi|269849572|sp|B7NQN5|HDA_ECO7I RecName: Full=DnaA-homolog protein hda
 gi|269849573|sp|B7MYC3|HDA_ECO81 RecName: Full=DnaA-homolog protein hda
 gi|269849574|sp|B7M7K0|HDA_ECO8A RecName: Full=DnaA-homolog protein hda
 gi|269849575|sp|C4ZX71|HDA_ECOBW RecName: Full=DnaA-homolog protein hda
 gi|269849576|sp|B1XAX1|HDA_ECODH RecName: Full=DnaA-homolog protein hda
 gi|269849577|sp|A8A2Y8|HDA_ECOHS RecName: Full=DnaA-homolog protein hda
 gi|269849578|sp|A1ADY9|HDA_ECOK1 RecName: Full=DnaA-homolog protein hda
 gi|269849579|sp|Q0TEZ2|HDA_ECOL5 RecName: Full=DnaA-homolog protein hda
 gi|269849580|sp|P69932|HDA_ECOL6 RecName: Full=DnaA-homolog protein hda
 gi|269849581|sp|B1IWG4|HDA_ECOLC RecName: Full=DnaA-homolog protein hda
 gi|269849582|sp|P69931|HDA_ECOLI RecName: Full=DnaA-homolog protein hda
 gi|269849583|sp|B7N678|HDA_ECOLU RecName: Full=DnaA-homolog protein hda
 gi|269849584|sp|B6I568|HDA_ECOSE RecName: Full=DnaA-homolog protein hda
 gi|269849585|sp|B1LNE6|HDA_ECOSM RecName: Full=DnaA-homolog protein hda
 gi|269849586|sp|Q1R8P2|HDA_ECOUT RecName: Full=DnaA-homolog protein hda
 gi|269849588|sp|B2TXS1|HDA_SHIB3 RecName: Full=DnaA-homolog protein hda
 gi|269849589|sp|Q31XZ6|HDA_SHIBS RecName: Full=DnaA-homolog protein hda
 gi|269849590|sp|Q32D72|HDA_SHIDS RecName: Full=DnaA-homolog protein hda
 gi|269849591|sp|Q0T224|HDA_SHIF8 RecName: Full=DnaA-homolog protein hda
 gi|269849592|sp|P69934|HDA_SHIFL RecName: Full=DnaA-homolog protein hda
 gi|269849593|sp|Q3YZ56|HDA_SHISS RecName: Full=DnaA-homolog protein hda
 gi|226510964|gb|AAC75549.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia
           coli str. K-12 substr. MG1655]
 gi|291323679|gb|EFE63107.1| DnaA regulatory inactivator Hda [Escherichia coli B088]
 gi|291428139|gb|EFF01166.1| DNA replication initiation factor [Escherichia coli FVEC1412]
 gi|291471359|gb|EFF13843.1| DnaA regulatory inactivator Hda [Escherichia coli B354]
 gi|298279122|gb|EFI20636.1| DNA replication initiation factor [Escherichia coli FVEC1302]
          Length = 233

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 2   NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 61

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 62  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 121

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 122 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 181

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 182 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 232


>gi|52425933|ref|YP_089070.1| DNA replication initiation factor [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307985|gb|AAU38485.1| DnaA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 232

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI- 83
           E QL     +    + D+  V         L  +      +   + G  GSGKS L    
Sbjct: 3   EHQLPLPIHQIDDETLDNFFVGHNDLLVDSLSKNIACLKQQFFYVWGAEGSGKSHLLKAV 62

Query: 84  ---WSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINS 132
              +  ++R   +  ++KS          ++ +  V L+D+ L+  N+     +F + N 
Sbjct: 63  SNQFLLQNRPAIYVPLSKSQYFSPAVLENLEYQDAVCLDDLQLVVGNEEWEIAIFDLFNR 122

Query: 133 IHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           I + +++LL+ +A   P +  + LPDL SRL    +  +++  D+    V+ +   +R I
Sbjct: 123 IKEKENTLLLISANQSPNALPIKLPDLASRLTWGEIYHLNVFTDEEKILVLQRNAHERGI 182

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +  + A ++++R++R +      + K+D  +L     +T     E L
Sbjct: 183 ELPDETANFLLKRLDRDMHTLFDALLKLDKASLQAQRKLTIPFVKETL 230


>gi|152981564|ref|YP_001354562.1| hypothetical protein mma_2872 [Janthinobacterium sp. Marseille]
 gi|151281641|gb|ABR90051.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 223

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 8/224 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----PSRVVILVGPSGSGKSCL 80
            QL    P     + D  +V +   +  +L+    +        R V L G +G+GK+ L
Sbjct: 2   RQLLLDLPAEKPQTLDSFVVGT-NAELAQLLQRLAAGQPNGLDERFVYLWGEAGAGKTHL 60

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSS 139
               ++   +    + A + D +        LL+D   L  +     F + N + +    
Sbjct: 61  LRAMAETPHARYLDSDAGTDDFLYDSATTLYLLDDSHKLTPDAQIAAFALFNQVREQGGC 120

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LL      P S  V   DL +R     + ++    DD     +      R + +   +  
Sbjct: 121 LLAAGNAAPASLTVR-EDLRTRFGWGLIYQVHGLSDDEKIAALTHAAGARGLTLSPGVLP 179

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           Y++    R +     ++D +D  +L     IT  L  E+L+   
Sbjct: 180 YLITHFARDMRSLSAMLDALDQYSLETKRPITLPLLRELLQRQD 223


>gi|94311844|ref|YP_585054.1| DnaA regulatory inactivator Hda [Cupriavidus metallidurans CH34]
 gi|93355696|gb|ABF09785.1| ATPase regulatory factor involved in DnaA inactivation [Cupriavidus
           metallidurans CH34]
          Length = 235

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 15/234 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS------WPSRVVILVGPSGSGK 77
           +++QL          + ++  V +A  ++V+ +   P          R++ L G  GSG+
Sbjct: 4   RQKQLSLELGSPPPSTFENFFV-AANRESVQRLRELPGLVAREQATDRLIYLWGEIGSGR 62

Query: 78  SCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIIN 131
           + L +   D +          S      D +   + +   ++D++LLD      +F + N
Sbjct: 63  THLLHAVCDAALHTGLNCRYLSPHHALSDFMFDPSCQIYTVDDVELLDEARQIAVFSLYN 122

Query: 132 SIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
            +  +   +L++     P +  V   DL +RL    V ++    D+     +++   +R 
Sbjct: 123 EVRAHVRCALVVAGGLAPRAMPVR-EDLRTRLGWGLVYQVESLSDEDKMAALLQAARERG 181

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + +  ++  ++V R  R +     L+D +D  +L R   +T  L  E+  E ++
Sbjct: 182 LQLSPEIPHWLVTRHYRDMPSLMALLDALDTYSLERKRAVTLPLLREMFAEFRE 235


>gi|322515535|ref|ZP_08068519.1| DnaA regulatory inactivator Hda [Actinobacillus ureae ATCC 25976]
 gi|322118425|gb|EFX90682.1| DnaA regulatory inactivator Hda [Actinobacillus ureae ATCC 25976]
          Length = 236

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 96/234 (41%), Gaps = 20/234 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL     +    + D+    +++     L  ++         + G   SGKS L    S
Sbjct: 1   MQLPLPIHQVDDETFDNFYAENSLVLLDSLRQNFVDVQQPFFYIWGGKSSGKSHLLKAVS 60

Query: 86  ------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDT---QLFHIINSI 133
                  ++ S      ++    +++D  +    + L+D+ ++  ++     +F++ N I
Sbjct: 61  NHYLLNQQTSSYIPLEKSQYFSPMVLDNAEQLDVICLDDLQVVAGDEAWELAIFNLFNQI 120

Query: 134 HQYDSS--------LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            +            LL++A   P    + LPDL SRL    V +++   D+    ++ + 
Sbjct: 121 REQQGLFGSGHKTLLLISADCPPHQLKINLPDLRSRLTWGEVYQLNDLSDEQKRIILQRN 180

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + +  ++A ++++R++R L      +D++D  +L     +T     E+L
Sbjct: 181 AYQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKLTVPFVKEIL 234


>gi|294664601|ref|ZP_06729941.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605629|gb|EFF48940.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 233

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 19/231 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82
           QL  +         D  +        +           W    + L GP+G+GK+ LA +
Sbjct: 5   QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGQVSDW----LYLSGPAGTGKTHLALS 60

Query: 83  IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
           + +   ++ R          A  L   L  ++ R  V L+ ++ +     ++  LF   N
Sbjct: 61  LCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  +LL TAR  P    + LPDL SRL     + + + DD     V+      R +
Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDAARAAVLRDRAQRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +D+    +++   ER L     L+D++D  +L+    IT      VL++ 
Sbjct: 181 ALDEAAIDWLLTHSERELAALVALLDRLDRESLAAKRRITVPFLRRVLEDL 231


>gi|325924382|ref|ZP_08185921.1| regulatory inactivation of DnaA Hda protein [Xanthomonas gardneri
           ATCC 19865]
 gi|325545143|gb|EGD16458.1| regulatory inactivation of DnaA Hda protein [Xanthomonas gardneri
           ATCC 19865]
          Length = 233

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 19/229 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82
           QL  +         D  +        +           W    + L GP+G+GK+ LA +
Sbjct: 5   QLPLALRAPPDQRFDSYIAAPEGLLAQLQALAAGQVSDW----LYLAGPAGTGKTHLALS 60

Query: 83  IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
           + +   ++ R          A  L   L  ++ R  V+L+ +D +     ++  LF   N
Sbjct: 61  LCAAAEQAGRASAYLPLHAAAGRLRDALEALEGRSLVVLDGLDTIAGQRDDEVALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                 ++LL TAR  P    + LPDL SRL     + + + DD     V+      R +
Sbjct: 121 RARAAGTTLLYTARQMPDGLALVLPDLRSRLSQCIRISLPVLDDAGRAAVLRDRAQRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +D+    +++   ER L     L+D++D  +L+    IT      VL+
Sbjct: 181 ALDEAAIDWLLIHSERELAGLVALLDRLDRESLAAKRRITVPFLRRVLE 229


>gi|260913124|ref|ZP_05919606.1| DnaA regulatory inactivator Hda [Pasteurella dagmatis ATCC 43325]
 gi|260632711|gb|EEX50880.1| DnaA regulatory inactivator Hda [Pasteurella dagmatis ATCC 43325]
          Length = 232

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKS-----LDSILIDTRKPVLLE 114
            +   + G   SGKS L    S+    + R   +  + KS          ++ ++ V L+
Sbjct: 42  QQFFYIWGEQSSGKSHLLKAISNHFFLQQRPAIYVPLEKSCYFSPAVLENLEYQQLVCLD 101

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I +   +LL+ +A   P +  V LPDL SRL+   + ++
Sbjct: 102 DLHTVIGNDEWELAIFDLFNRIKEIGKTLLLISANQSPTALPVKLPDLASRLRWGEIYQL 161

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D    +V+ +   +R I +  + + ++++R+ER +      + ++D  +L     +
Sbjct: 162 TPLTDIQKIQVLQQHAKERGIELPDETSNFLLKRLERDMQTLLDALTQLDQASLQAQRKL 221

Query: 231 TRSLAAEVLK 240
           T     E+LK
Sbjct: 222 TIPFVKEILK 231


>gi|261400250|ref|ZP_05986375.1| DnaA regulatory inactivator Hda [Neisseria lactamica ATCC 23970]
 gi|313668273|ref|YP_004048557.1| hypothetical protein NLA_9620 [Neisseria lactamica ST-640]
 gi|269210054|gb|EEZ76509.1| DnaA regulatory inactivator Hda [Neisseria lactamica ATCC 23970]
 gi|313005735|emb|CBN87189.1| hypothetical protein NLA_9620 [Neisseria lactamica 020-06]
          Length = 222

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F        D  L  +   + V ++        + + + G  G+GKS L   W  
Sbjct: 3   QLIFDFAAHDYPGFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 58

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      +  L     +  + + ++ ++ L   +  L F I N         
Sbjct: 59  QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+    +     V   DL +R+    V ++    D      +  M A RQ+ +D ++  Y
Sbjct: 118 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +++   R +     ++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 178 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220


>gi|21243683|ref|NP_643265.1| hypothetical protein XAC2956 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109263|gb|AAM37801.1| replication related protein [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 233

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 19/230 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82
           QL  +         D  +        +           W    + L GP+G+GK+ LA +
Sbjct: 5   QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGQVSDW----LYLSGPAGTGKTHLALS 60

Query: 83  IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
           + +   ++ R          A  L   L  ++ R  V L+ ++ +     ++  LF   N
Sbjct: 61  LCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  +LL TAR  P    + LPDL SRL     + + + DD     V+      R +
Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDAARAAVLRDRAQRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +D+    +++   ER L     L+D++D  +L+    IT      VL++
Sbjct: 181 ALDEAAIDWLLTHSERELAALVALLDRLDRESLAAKRRITVPFLRRVLED 230


>gi|301154665|emb|CBW14127.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus
           parainfluenzae T3T1]
          Length = 231

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLE 114
            +   L G    GK+ L      K    + S I   L             ++ ++ V L+
Sbjct: 41  QQFFYLWGNQSVGKTHLLRALCHKYIQQQRSAIYVPLSKSQYFSTAVFENLEQQELVCLD 100

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  N   +  LF + N I     +LL+ +A   P +  V LPDL SRLK     ++
Sbjct: 101 DLQAVIGNSEWEIALFDLFNCIKANGKTLLVVSAEQSPTALPVKLPDLASRLKWGESYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+    V+ +    R I +    A +I  R++R +   ++ + ++D  +L     +
Sbjct: 161 IPLSDEQKLAVLKQNAHQRGIMLSDDTANFIFTRLDRDMATLKEALVQLDKASLQAKRNL 220

Query: 231 TRSLAAEVL 239
           T      +L
Sbjct: 221 TIPFVKSIL 229


>gi|68250242|ref|YP_249354.1| DNA replication initiation factor [Haemophilus influenzae 86-028NP]
 gi|68058441|gb|AAX88694.1| predicted ATPase involved in DNA replication initiation
           [Haemophilus influenzae 86-028NP]
          Length = 231

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 41  QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   +V+      R   +  + A +++ R+ R +    + +D +D  +L     +
Sbjct: 161 NSLTDEQKVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 221 TIPFVKEILN 230


>gi|311278596|ref|YP_003940827.1| DnaA regulatory inactivator Hda [Enterobacter cloacae SCF1]
 gi|308747791|gb|ADO47543.1| DnaA regulatory inactivator Hda [Enterobacter cloacae SCF1]
          Length = 248

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 90/231 (38%), Gaps = 17/231 (7%)

Query: 25  EEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
             QL          +          ++  A++ +       S  + L    G+G+S L +
Sbjct: 19  PAQLSLPLYLPDDETFTSFWPGDNPSLLAALQTMLRQEH--SGYIYLWSREGAGRSHLLH 76

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDTQ---LFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F++ 
Sbjct: 77  AACAELSQRGDAVGYVPLDKRTWFVPEVLEGMEHLALVCIDNIECIAGDEPWEMGIFNLY 136

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + L DL SRL    + K+    D+   + +      R
Sbjct: 137 NRILESGKTRLLITGDRPPRQLKLGLADLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 196

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +    + +D++D  +++    +T     E+LK
Sbjct: 197 GFEMPEDVCRFLLKRLDREMRSLFQTLDQLDRASITAQRKLTIPFVKEILK 247


>gi|59801246|ref|YP_207958.1| hypothetical protein NGO0841 [Neisseria gonorrhoeae FA 1090]
 gi|194098531|ref|YP_002001593.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae NCCP11945]
 gi|239998920|ref|ZP_04718844.1| hypothetical protein Ngon3_05471 [Neisseria gonorrhoeae 35/02]
 gi|240014169|ref|ZP_04721082.1| hypothetical protein NgonD_05917 [Neisseria gonorrhoeae DGI18]
 gi|240016604|ref|ZP_04723144.1| hypothetical protein NgonFA_05473 [Neisseria gonorrhoeae FA6140]
 gi|240112839|ref|ZP_04727329.1| hypothetical protein NgonM_04542 [Neisseria gonorrhoeae MS11]
 gi|240115595|ref|ZP_04729657.1| hypothetical protein NgonPID1_04995 [Neisseria gonorrhoeae PID18]
 gi|240121732|ref|ZP_04734694.1| hypothetical protein NgonPI_08222 [Neisseria gonorrhoeae PID24-1]
 gi|240123447|ref|ZP_04736403.1| hypothetical protein NgonP_05800 [Neisseria gonorrhoeae PID332]
 gi|240125692|ref|ZP_04738578.1| hypothetical protein NgonSK_05633 [Neisseria gonorrhoeae SK-92-679]
 gi|240128149|ref|ZP_04740810.1| hypothetical protein NgonS_05807 [Neisseria gonorrhoeae SK-93-1035]
 gi|254493704|ref|ZP_05106875.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260440595|ref|ZP_05794411.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae DGI2]
 gi|268594762|ref|ZP_06128929.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268598915|ref|ZP_06133082.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601269|ref|ZP_06135436.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268682070|ref|ZP_06148932.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684280|ref|ZP_06151142.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686538|ref|ZP_06153400.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291043900|ref|ZP_06569616.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399108|ref|ZP_06643273.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae F62]
 gi|59718141|gb|AAW89546.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193933821|gb|ACF29645.1| DnaA-related protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512744|gb|EEH62089.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548151|gb|EEZ43569.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583046|gb|EEZ47722.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268585400|gb|EEZ50076.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268622354|gb|EEZ54754.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624564|gb|EEZ56964.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268626822|gb|EEZ59222.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291012363|gb|EFE04352.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610522|gb|EFF39632.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae F62]
 gi|317164209|gb|ADV07750.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 222

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F      S D  L  +   + V ++          + + G  G+GKS L   W  
Sbjct: 3   QLIFDFAAHDYPSFDKFL-GTENAELVYVLQHKHD---PFIYVWGEEGAGKSHLLQAWVA 58

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      +  L     +  + + ++ ++ L   +  L F I N         
Sbjct: 59  QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+    +     V   DL +R+    V ++    D      +  M A RQ+ +D ++  Y
Sbjct: 118 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALANMAAARQVTVDSEIFEY 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +++   R +     ++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 178 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220


>gi|294626251|ref|ZP_06704854.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599397|gb|EFF43531.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 233

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 19/230 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82
           QL  +         D  +        +           W    + L GP+G+GK+ LA +
Sbjct: 5   QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGQVSDW----LYLSGPAGTGKTHLALS 60

Query: 83  IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
           + +   ++ R          A  L   L  ++ R  V L+ ++ +     ++  LF   N
Sbjct: 61  LCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  +LL TAR  P    + LPDL SRL     + + + DD     V+      R +
Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDAARAAVLRDRAQRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +D+    +++   ER L     L+D++D  +L+    IT      VL++
Sbjct: 181 ALDEAAIDWLLTHRERELAALVDLLDRLDRESLAAKRRITVPFLRRVLED 230


>gi|296314280|ref|ZP_06864221.1| DnaA regulatory inactivator Hda [Neisseria polysaccharea ATCC
           43768]
 gi|296839079|gb|EFH23017.1| DnaA regulatory inactivator Hda [Neisseria polysaccharea ATCC
           43768]
          Length = 222

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F      S D  L  +   + V ++        + + + G  G+GKS L   W  
Sbjct: 3   QLIFDFAAHDYPSFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 58

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      +  L     +T + + ++ ++ L   +  L F I N         
Sbjct: 59  QALEAGKNAAYIDAASMPLTDAAFET-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+    +     V   DL +R+    V ++    D      +  M A RQ+ +D ++  Y
Sbjct: 118 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +++   R +     ++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 178 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220


>gi|319776111|ref|YP_004138599.1| ATPase involved in DNA replication initiation [Haemophilus
           influenzae F3047]
 gi|317450702|emb|CBY86922.1| predicted ATPase involved in DNA replication initiation
           [Haemophilus influenzae F3047]
          Length = 231

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 41  QPFFYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQNVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   KV+      R   +  + A +++ R+ R +    + +D +D  +L     +
Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 221 TIPFVKEILN 230


>gi|315288098|gb|EFU47498.1| DnaA regulatory inactivator Hda [Escherichia coli MS 110-3]
          Length = 230

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
             QL          +               L +      S  + L    G+G+S L +  
Sbjct: 1   PAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAA 60

Query: 85  SD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHIINS 132
                 +  +  +  + K    +      ++    V +++I+ +  ++     +F + N 
Sbjct: 61  CAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNR 120

Query: 133 IHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R  
Sbjct: 121 ILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGF 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            + + +  ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 181 ELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 229


>gi|145634445|ref|ZP_01790155.1| DNA replication initiation factor [Haemophilus influenzae PittAA]
 gi|145268425|gb|EDK08419.1| DNA replication initiation factor [Haemophilus influenzae PittAA]
          Length = 231

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 41  QPFFYIWGDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   +V+      R   +  + A +++ R+ R +    + +D +D  +L     +
Sbjct: 161 NSLTDEQKVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 221 TIPFVKEILN 230


>gi|15676960|ref|NP_274109.1| hypothetical protein NMB1076 [Neisseria meningitidis MC58]
 gi|254804954|ref|YP_003083175.1| DnaA related protein, truncated [Neisseria meningitidis alpha14]
 gi|304387630|ref|ZP_07369817.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ATCC 13091]
 gi|7226316|gb|AAF41471.1| DnaA-related protein [Neisseria meningitidis MC58]
 gi|254668496|emb|CBA05833.1| DnaA related protein, truncated [Neisseria meningitidis alpha14]
 gi|261392600|emb|CAX50162.1| DnaA-homolog protein Hda [Neisseria meningitidis 8013]
 gi|304338355|gb|EFM04478.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ATCC 13091]
 gi|308389233|gb|ADO31553.1| hypothetical protein NMBB_1213 [Neisseria meningitidis alpha710]
 gi|316984795|gb|EFV63753.1| dnaA regulatory inactivator Hda [Neisseria meningitidis H44/76]
 gi|325128199|gb|EGC51087.1| DnaA regulatory inactivator Hda [Neisseria meningitidis N1568]
 gi|325132068|gb|EGC54764.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M6190]
 gi|325134243|gb|EGC56891.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M13399]
 gi|325136375|gb|EGC58983.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M0579]
 gi|325138001|gb|EGC60574.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ES14902]
 gi|325140287|gb|EGC62811.1| DnaA regulatory inactivator Hda [Neisseria meningitidis CU385]
 gi|325142331|gb|EGC64743.1| DnaA regulatory inactivator Hda [Neisseria meningitidis 961-5945]
 gi|325144711|gb|EGC67008.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240013]
 gi|325198284|gb|ADY93740.1| DnaA regulatory inactivator Hda [Neisseria meningitidis G2136]
 gi|325200243|gb|ADY95698.1| DnaA regulatory inactivator Hda [Neisseria meningitidis H44/76]
 gi|325202167|gb|ADY97621.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240149]
 gi|325204119|gb|ADY99572.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240355]
 gi|325206100|gb|ADZ01553.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M04-240196]
 gi|325208079|gb|ADZ03531.1| DnaA regulatory inactivator Hda [Neisseria meningitidis NZ-05/33]
          Length = 222

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F      S D  L  +   + V ++        + + + G  G+GKS L   W  
Sbjct: 3   QLIFDFAAHDYPSFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 58

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      +  L     +  + + ++ ++ L   +  L F I N         
Sbjct: 59  QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+    +     V   DL +R+    V ++    D      +  M A RQ+ +D ++  Y
Sbjct: 118 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +++   R +     ++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 178 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220


>gi|21232217|ref|NP_638134.1| hypothetical protein XCC2786 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767654|ref|YP_242416.1| hypothetical protein XC_1327 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113975|gb|AAM42058.1| replication related protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572986|gb|AAY48396.1| replication related protein [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 233

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 21/231 (9%)

Query: 27  QLFFSFPRCLGISRDDLLVHS----AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA- 81
           QL  +         D  +       A  QA         W    + L GPSG+GK+ LA 
Sbjct: 5   QLPLALRAPSDQRLDSYIAAPDGLIAQLQAFAA-GQLSDW----LYLAGPSGTGKTHLAL 59

Query: 82  NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHII 130
           ++ +   ++ R          A  L   L  ++ R  V L+ +D +     ++  LF   
Sbjct: 60  SVCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGVDSIAGQCEDEVALFDFH 119

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N       +LL TAR  P    + LPDL SRL     + + + DD     V+      R 
Sbjct: 120 NRARAAGITLLYTARQMPDGLALVLPDLRSRLSQCVRISLPVLDDVARAAVLRDRAQRRG 179

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +D+    +++   ER L     L+D++D  +L+    +T      VL +
Sbjct: 180 LALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAQRRVTVPFLRRVLGD 230


>gi|56412621|ref|YP_149696.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361556|ref|YP_002141192.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|81599733|sp|Q5PL41|HDA_SALPA RecName: Full=DnaA-homolog protein hda
 gi|226740579|sp|B5BB08|HDA_SALPK RecName: Full=DnaA-homolog protein hda
 gi|56126878|gb|AAV76384.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093032|emb|CAR58469.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 241

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA 81
           N   QL          +             +  + +      S  + L    G+G+S L 
Sbjct: 10  NTPAQLSLPLYLPDDETFASFWPGD-NASLLAALQNVLRQEHSGYIYLWAREGAGRSHLL 68

Query: 82  NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129
           +        +  +  +  + K    +      ++    V +++I+ +  ++     +F +
Sbjct: 69  HAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECVAGDELWEMAIFDL 128

Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      
Sbjct: 129 YNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARL 188

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 189 RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240


>gi|82703729|ref|YP_413295.1| hypothetical protein Nmul_A2616 [Nitrosospira multiformis ATCC
           25196]
 gi|82411794|gb|ABB75903.1| regulatory inactivation of DnaA Hda protein [Nitrosospira
           multiformis ATCC 25196]
          Length = 224

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 7/186 (3%)

Query: 64  SRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            R V + G +G GKS L    A+       +T +    +            V+++D+D L
Sbjct: 40  ERFVYIWGGTGCGKSHLLQGVASACKRNDMNTLYFACGERTSFANGSEADCVMVDDVDRL 99

Query: 120 DFN-DTQLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
             +    LFH+ N I     + LL++    P    +   DL +RL    V ++    D+ 
Sbjct: 100 GADAQIGLFHLYNRIRDEGQAFLLVSGSVAPTQLKLR-ADLLTRLAWGLVYEVHELTDEE 158

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             + +    + R + + +++  Y+++   R L      ++ +D  +L+    IT  L  E
Sbjct: 159 KMEAMKSHASSRGLALPQEVCDYLLRHERRDLTSLMAKLNALDKYSLASHRKITVPLVRE 218

Query: 238 VLKETQ 243
           +L+   
Sbjct: 219 LLQAAS 224


>gi|229845047|ref|ZP_04465183.1| DNA replication initiation factor [Haemophilus influenzae 6P18H1]
 gi|229812019|gb|EEP47712.1| DNA replication initiation factor [Haemophilus influenzae 6P18H1]
          Length = 231

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 41  QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   +V+      R   +  + A +++ R+ R +    + +D +D  +L     +
Sbjct: 161 NSLTDEQKVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 221 TIPFVKEILN 230


>gi|22125308|ref|NP_668731.1| DNA replication initiation factor [Yersinia pestis KIM 10]
 gi|45442467|ref|NP_994006.1| DNA replication initiation factor [Yersinia pestis biovar Microtus
           str. 91001]
 gi|149365068|ref|ZP_01887103.1| hypothetical protein YPE_0204 [Yersinia pestis CA88-4125]
 gi|153949198|ref|YP_001400218.1| DNA replication initiation factor [Yersinia pseudotuberculosis IP
           31758]
 gi|161760564|ref|YP_071299.2| DNA replication initiation factor [Yersinia pseudotuberculosis IP
           32953]
 gi|162100168|ref|YP_652172.2| DNA replication initiation factor [Yersinia pestis Antiqua]
 gi|162139443|ref|YP_647243.2| DNA replication initiation factor [Yersinia pestis Nepal516]
 gi|162420351|ref|YP_001607487.1| DNA replication initiation factor [Yersinia pestis Angola]
 gi|165926912|ref|ZP_02222744.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165935965|ref|ZP_02224535.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011241|ref|ZP_02232139.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212401|ref|ZP_02238436.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398390|ref|ZP_02303914.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422726|ref|ZP_02314479.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424770|ref|ZP_02316523.1| DnaA homolog protein Hda [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218930116|ref|YP_002347991.1| DNA replication initiation factor [Yersinia pestis CO92]
 gi|270489930|ref|ZP_06207004.1| DnaA regulatory inactivator Hda [Yersinia pestis KIM D27]
 gi|294504815|ref|YP_003568877.1| DNA replication initiation factor [Yersinia pestis Z176003]
 gi|57012735|sp|Q8ZCC1|HDA_YERPE RecName: Full=DnaA-homolog protein hda
 gi|167008789|sp|A7FG40|HDA_YERP3 RecName: Full=DnaA-homolog protein hda
 gi|226740583|sp|A9QZX0|HDA_YERPG RecName: Full=DnaA-homolog protein hda
 gi|21958185|gb|AAM84982.1|AE013744_5 putative DNA replication factor [Yersinia pestis KIM 10]
 gi|45437332|gb|AAS62883.1| ATPase involved in DNA replication initiation [Yersinia pestis
           biovar Microtus str. 91001]
 gi|115348727|emb|CAL21673.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149291481|gb|EDM41555.1| hypothetical protein YPE_0204 [Yersinia pestis CA88-4125]
 gi|152960693|gb|ABS48154.1| DnaA-like protein [Yersinia pseudotuberculosis IP 31758]
 gi|162353166|gb|ABX87114.1| DnaA homolog protein Hda [Yersinia pestis Angola]
 gi|165916110|gb|EDR34717.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921263|gb|EDR38487.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989919|gb|EDR42220.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206332|gb|EDR50812.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958317|gb|EDR55338.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050894|gb|EDR62302.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056652|gb|EDR66421.1| DnaA homolog protein Hda [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|262362878|gb|ACY59599.1| DNA replication initiation factor [Yersinia pestis D106004]
 gi|262366801|gb|ACY63358.1| DNA replication initiation factor [Yersinia pestis D182038]
 gi|270338434|gb|EFA49211.1| DnaA regulatory inactivator Hda [Yersinia pestis KIM D27]
 gi|294355274|gb|ADE65615.1| DNA replication initiation factor [Yersinia pestis Z176003]
          Length = 239

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 87/232 (37%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++     P      +      G G+S L
Sbjct: 8   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQPH--GSYIYFWSREGGGRSHL 65

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        +  +  +  + K    I      ++    V +++I+ +  ++     +F+
Sbjct: 66  LHAACAELSQQGEAVGYVPLDKRAYFIPEVLEGMEQLALVCIDNIECIAGDEQWEMAMFN 125

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 237


>gi|240080794|ref|ZP_04725337.1| hypothetical protein NgonF_05711 [Neisseria gonorrhoeae FA19]
 gi|240117888|ref|ZP_04731950.1| hypothetical protein NgonPID_05407 [Neisseria gonorrhoeae PID1]
 gi|268596912|ref|ZP_06131079.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268603592|ref|ZP_06137759.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268550700|gb|EEZ45719.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268587723|gb|EEZ52399.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
          Length = 222

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 11/223 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F      S D  L  +   + V ++          + + G  G+GKS L   W  
Sbjct: 3   QLIFDFAAHDYPSFDKFL-GTENAELVYVLQHKHD---PFIYVWGEEGAGKSHLLQAWVA 58

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140
           ++      +      +  L     +  + + ++ ++ L   +  L F I N         
Sbjct: 59  QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNNGKGF 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+    +     V   DL +R+    V ++    D      +  M A RQ+ +D ++  Y
Sbjct: 118 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDPEKIDALANMAAARQVTVDSEIFEY 177

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +++   R +     ++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 178 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220


>gi|161502351|ref|YP_001569463.1| DNA replication initiation factor [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189042483|sp|A9MHP3|HDA_SALAR RecName: Full=DnaA-homolog protein hda
 gi|160863698|gb|ABX20321.1| hypothetical protein SARI_00384 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 241

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA 81
           N   QL          +             +  + +      S  + L    G+G+S L 
Sbjct: 10  NTPAQLSLPLYLPDDETFASFWPGD-NASLLAALQNVLRQEHSGYIYLWAREGAGRSHLL 68

Query: 82  NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129
           +        +  +  +  + K    +      ++    V +++I+ +  ++     +F +
Sbjct: 69  HAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECVAGDELWEMAIFDL 128

Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      
Sbjct: 129 YNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARL 188

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 189 RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240


>gi|163752404|ref|ZP_02159597.1| DNA replication initiation factor [Shewanella benthica KT99]
 gi|161327701|gb|EDP98890.1| DNA replication initiation factor [Shewanella benthica KT99]
          Length = 236

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 93/234 (39%), Gaps = 18/234 (7%)

Query: 23  NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSC 79
           N   QL      P     +       +  ++ ++ + +       + V L GP  SG++ 
Sbjct: 4   NSPLQLSLPVHLPDDETFNS--YYPAAGNDELIQSLQACAEGAAHQAVFLWGPVKSGRTH 61

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127
           L +     +   + S+    L             ++    + ++D+D +  +   +  +F
Sbjct: 62  LMHAACAHANDLQRSSFYIPLGIHASISPALLEGLEQLDLICIDDVDAIAGHPLWEEAIF 121

Query: 128 HIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            + N + +    SL+++A   P   G  L DL SR++     ++    D+     + +  
Sbjct: 122 DLYNRVSENNQCSLIVSASVSPSDSGFVLADLVSRMQWGLNYQLQPMADEEKLVALQRRA 181

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           A R + ++  +  +++ R+ R L     ++DK+D  +L     +T     E+LK
Sbjct: 182 AMRGLQLEDDVGRFLLNRLARDLRTLFDVLDKLDKDSLVHQRKLTIPFVKEMLK 235


>gi|16761414|ref|NP_457031.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765816|ref|NP_461431.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29140889|ref|NP_804231.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181063|ref|YP_217480.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167991801|ref|ZP_02572900.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232045|ref|ZP_02657103.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168243269|ref|ZP_02668201.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261467|ref|ZP_02683440.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168466758|ref|ZP_02700612.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168817751|ref|ZP_02829751.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446139|ref|YP_002041757.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449619|ref|YP_002046559.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472246|ref|ZP_03078230.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735099|ref|YP_002115562.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250088|ref|YP_002147449.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263709|ref|ZP_03163783.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198242062|ref|YP_002216565.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200388824|ref|ZP_03215436.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929434|ref|ZP_03220508.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353601|ref|YP_002227402.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857909|ref|YP_002244560.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213160889|ref|ZP_03346599.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425351|ref|ZP_03358101.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582544|ref|ZP_03364370.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213616332|ref|ZP_03372158.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647175|ref|ZP_03377228.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855522|ref|ZP_03383762.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224582970|ref|YP_002636768.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238913635|ref|ZP_04657472.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289829340|ref|ZP_06546952.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|57012732|sp|Q7CQ21|HDA_SALTY RecName: Full=DnaA-homolog protein hda
 gi|57012734|sp|Q8XEQ0|HDA_SALTI RecName: Full=DnaA-homolog protein hda
 gi|75481740|sp|Q57LL3|HDA_SALCH RecName: Full=DnaA-homolog protein hda
 gi|226740573|sp|B5F171|HDA_SALA4 RecName: Full=DnaA-homolog protein hda
 gi|226740574|sp|B5FQI8|HDA_SALDC RecName: Full=DnaA-homolog protein hda
 gi|226740575|sp|B5R558|HDA_SALEP RecName: Full=DnaA-homolog protein hda
 gi|226740576|sp|B5RCW8|HDA_SALG2 RecName: Full=DnaA-homolog protein hda
 gi|226740577|sp|B4TD71|HDA_SALHS RecName: Full=DnaA-homolog protein hda
 gi|226740578|sp|B4T0M5|HDA_SALNS RecName: Full=DnaA-homolog protein hda
 gi|226740580|sp|B4TR72|HDA_SALSV RecName: Full=DnaA-homolog protein hda
 gi|254800192|sp|C0PYR0|HDA_SALPC RecName: Full=DnaA-homolog protein hda
 gi|269969427|sp|A9N2Y3|HDA_SALPB RecName: Full=DnaA-homolog protein hda
 gi|25356046|pir||AF0818 conserved hypothetical protein STY2737 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421038|gb|AAL21390.1| putative ATPase involved in DNA replication initiation [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16503714|emb|CAD02698.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136514|gb|AAO68080.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62128696|gb|AAX66399.1| putative ATPase involved in DNA replication initiation [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|194404802|gb|ACF65024.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407923|gb|ACF68142.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458610|gb|EDX47449.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710601|gb|ACF89822.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630731|gb|EDX49323.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213791|gb|ACH51188.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241964|gb|EDY24584.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197936578|gb|ACH73911.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605922|gb|EDZ04467.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321153|gb|EDZ06353.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273382|emb|CAR38354.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205329842|gb|EDZ16606.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333601|gb|EDZ20365.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337580|gb|EDZ24344.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344978|gb|EDZ31742.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349619|gb|EDZ36250.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709712|emb|CAR34062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467497|gb|ACN45327.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247694|emb|CBG25521.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994607|gb|ACY89492.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159048|emb|CBW18561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913484|dbj|BAJ37458.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320086990|emb|CBY96760.1| Chromosomal replication initiator protein dnaA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322613765|gb|EFY10704.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619492|gb|EFY16368.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624997|gb|EFY21826.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629560|gb|EFY26336.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634010|gb|EFY30747.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635552|gb|EFY32263.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639900|gb|EFY36576.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644394|gb|EFY40935.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649152|gb|EFY45592.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655242|gb|EFY51551.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658289|gb|EFY54555.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664289|gb|EFY60486.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669457|gb|EFY65606.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673184|gb|EFY69290.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676575|gb|EFY72643.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683326|gb|EFY79340.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685788|gb|EFY81781.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715546|gb|EFZ07117.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130826|gb|ADX18256.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192535|gb|EFZ77764.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199580|gb|EFZ84671.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204644|gb|EFZ89642.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208092|gb|EFZ93037.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210185|gb|EFZ95086.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217051|gb|EGA01773.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220610|gb|EGA05059.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225470|gb|EGA09701.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229260|gb|EGA13384.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235425|gb|EGA19509.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237389|gb|EGA21452.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245144|gb|EGA29145.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248847|gb|EGA32773.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253134|gb|EGA36966.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258704|gb|EGA42365.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260609|gb|EGA44219.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266385|gb|EGA49873.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269784|gb|EGA53234.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624320|gb|EGE30665.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628698|gb|EGE35041.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989424|gb|AEF08407.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 241

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA 81
           N   QL          +             +  + +      S  + L    G+G+S L 
Sbjct: 10  NTPAQLSLPLYLPDDETFASFWPGD-NASLLAALQNVLRQEHSGYIYLWAREGAGRSHLL 68

Query: 82  NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129
           +        +  +  +  + K    +      ++    V +++I+ +  ++     +F +
Sbjct: 69  HAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECVAGDELWEMAIFDL 128

Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      
Sbjct: 129 YNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARL 188

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R   + + +  ++++R++R +      +D++D+ +++    +T     E+LK
Sbjct: 189 RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240


>gi|229846871|ref|ZP_04466978.1| DNA replication initiation factor [Haemophilus influenzae 7P49H1]
 gi|229810360|gb|EEP46079.1| DNA replication initiation factor [Haemophilus influenzae 7P49H1]
          Length = 231

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 41  QPFFYIWGDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   KV+      R   +  + A +++ R+ R +    K +D +D  +L     +
Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 221 TIPFVKEILN 230


>gi|145599449|ref|YP_001163525.1| DNA replication initiation factor [Yersinia pestis Pestoides F]
 gi|170023596|ref|YP_001720101.1| DNA replication initiation factor [Yersinia pseudotuberculosis
           YPIII]
 gi|186896199|ref|YP_001873311.1| DNA replication initiation factor [Yersinia pseudotuberculosis
           PB1/+]
 gi|229838671|ref|ZP_04458830.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229895735|ref|ZP_04510906.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia
           pestis Pestoides A]
 gi|229899237|ref|ZP_04514380.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901737|ref|ZP_04516859.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia
           pestis Nepal516]
 gi|57012730|sp|Q668E8|HDA_YERPS RecName: Full=DnaA-homolog protein hda
 gi|122980224|sp|Q1CK37|HDA_YERPN RecName: Full=DnaA-homolog protein hda
 gi|123245695|sp|Q1C5P5|HDA_YERPA RecName: Full=DnaA-homolog protein hda
 gi|167008790|sp|A4TMP0|HDA_YERPP RecName: Full=DnaA-homolog protein hda
 gi|226740582|sp|B2K9J7|HDA_YERPB RecName: Full=DnaA-homolog protein hda
 gi|226740584|sp|B1JSF7|HDA_YERPY RecName: Full=DnaA-homolog protein hda
 gi|51590390|emb|CAH22030.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108775124|gb|ABG17643.1| regulatory inactivation of DnaA Hda protein [Yersinia pestis
           Nepal516]
 gi|108780169|gb|ABG14227.1| regulatory inactivation of DnaA Hda protein [Yersinia pestis
           Antiqua]
 gi|145211145|gb|ABP40552.1| regulatory inactivation of DnaA Hda protein [Yersinia pestis
           Pestoides F]
 gi|169750130|gb|ACA67648.1| DnaA regulatory inactivator Hda [Yersinia pseudotuberculosis YPIII]
 gi|186699225|gb|ACC89854.1| DnaA regulatory inactivator Hda [Yersinia pseudotuberculosis PB1/+]
 gi|229681666|gb|EEO77760.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia
           pestis Nepal516]
 gi|229687639|gb|EEO79712.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229695037|gb|EEO85084.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229701541|gb|EEO89569.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia
           pestis Pestoides A]
 gi|320014366|gb|ADV97937.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 235

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 87/232 (37%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++     P      +      G G+S L
Sbjct: 4   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQPH--GSYIYFWSREGGGRSHL 61

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        +  +  +  + K    I      ++    V +++I+ +  ++     +F+
Sbjct: 62  LHAACAELSQQGEAVGYVPLDKRAYFIPEVLEGMEQLALVCIDNIECIAGDEQWEMAMFN 121

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 122 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 182 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233


>gi|260582654|ref|ZP_05850443.1| DnaA regulatory inactivator Hda [Haemophilus influenzae NT127]
 gi|260094326|gb|EEW78225.1| DnaA regulatory inactivator Hda [Haemophilus influenzae NT127]
          Length = 231

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 41  QPFFYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   KV+      R   +  + A +++ R+ R +    + +D +D  +L     +
Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 221 TIPFVKEILN 230


>gi|145629279|ref|ZP_01785078.1| hypothetical protein CGSHi22121_10765 [Haemophilus influenzae
           22.1-21]
 gi|145639207|ref|ZP_01794814.1| hypothetical protein CGSHiII_04194 [Haemophilus influenzae PittII]
 gi|144978782|gb|EDJ88505.1| hypothetical protein CGSHi22121_10765 [Haemophilus influenzae
           22.1-21]
 gi|145271769|gb|EDK11679.1| hypothetical protein CGSHiII_04194 [Haemophilus influenzae PittII]
 gi|309750783|gb|ADO80767.1| DNA replication initiation factor Had [Haemophilus influenzae
           R2866]
          Length = 231

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 41  QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   KV+      R   +  + A +++ R+ R +    + +D +D  +L     +
Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 221 TIPFVKEILN 230


>gi|329123275|ref|ZP_08251843.1| DnaA regulatory inactivator Hda [Haemophilus aegyptius ATCC 11116]
 gi|327471484|gb|EGF16932.1| DnaA regulatory inactivator Hda [Haemophilus aegyptius ATCC 11116]
          Length = 236

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 46  QPFFYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 105

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 106 DLQNVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 165

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   KV+      R   +  + A +++ R+ R +    + +D +D  +L     +
Sbjct: 166 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 225

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 226 TIPFVKEILN 235


>gi|319896920|ref|YP_004135115.1| atpase regulatory factor involved in dnaa inactivation [Haemophilus
           influenzae F3031]
 gi|317432424|emb|CBY80779.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus
           influenzae F3031]
          Length = 231

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ +  V L+
Sbjct: 41  QPFFYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQALVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   KV+      R   +  + A +++ R+ R +    + +D +D  +L     +
Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 221 TIPFVKEILN 230


>gi|152971350|ref|YP_001336459.1| DNA replication initiation factor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206580464|ref|YP_002237176.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae 342]
 gi|238895946|ref|YP_002920682.1| DNA replication initiation factor [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042106|ref|ZP_06015281.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934116|ref|YP_003438175.1| DnaA regulatory inactivator Hda [Klebsiella variicola At-22]
 gi|290508321|ref|ZP_06547692.1| DnaA regulatory inactivator Hda [Klebsiella sp. 1_1_55]
 gi|269969359|sp|B5XNQ6|HDA_KLEP3 RecName: Full=DnaA-homolog protein hda
 gi|269969360|sp|A6TCA8|HDA_KLEP7 RecName: Full=DnaA-homolog protein hda
 gi|150956199|gb|ABR78229.1| DNA replication initiation factor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206569522|gb|ACI11298.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae 342]
 gi|238548264|dbj|BAH64615.1| DNA replication initiation factor [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259040536|gb|EEW41632.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288888845|gb|ADC57163.1| DnaA regulatory inactivator Hda [Klebsiella variicola At-22]
 gi|289777715|gb|EFD85712.1| DnaA regulatory inactivator Hda [Klebsiella sp. 1_1_55]
          Length = 225

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 82/190 (43%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
           S  + +    G+G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 35  SGYIYIWSREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLEGMEQLALVCID 94

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F++ N I +     LL+T    P    + LPDL SRL    + K+
Sbjct: 95  NIECVAGDEPWEMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D+ +++    +
Sbjct: 155 QPLSDEDKLQALQLRARLRGFEMPEDVCRFLLKRLDREMRSLFMTLDQLDHASITAQRKL 214

Query: 231 TRSLAAEVLK 240
           T     E+LK
Sbjct: 215 TIPFVKEILK 224


>gi|88859787|ref|ZP_01134427.1| putative regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas tunicata D2]
 gi|88818804|gb|EAR28619.1| putative regulatory factor involved in inactivation of DnaA
           [Pseudoalteromonas tunicata D2]
          Length = 236

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 100/236 (42%), Gaps = 22/236 (9%)

Query: 23  NKEEQLFFS--FPRCLGI----SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG 76
           ++  Q+  +   P           ++ LV S ++ +   + +      +   L G + SG
Sbjct: 4   HEPMQMALAVTLPDDETFTSYFGGENSLVVSHLKNSFEQMKTD----FQFTYLCGLADSG 59

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DT 124
           KS L       ++    S I  S+  I+         +++   V ++D+ L+  +   + 
Sbjct: 60  KSHLLYATCVYAQERGLSTILLSMKEIIGLEPSMLDGLESLSVVCIDDLHLIAGHPNWER 119

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
            +F+  N  ++ D  LL+ +   P    + LPDL SRLK  T  +I    DD   + +VK
Sbjct: 120 AMFNFYNRFNEPDKLLLVASDLLPDMITIQLPDLESRLKWGTTFQIRSMSDDDKAEALVK 179

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
               R + +  + A +++ R+ R +     ++DK+D+ ++ +   +T       L 
Sbjct: 180 RAKMRGLELSIECARFLLTRLSRDMRALLDVLDKLDHASMVQQRKLTIPFIKVTLN 235


>gi|330830282|ref|YP_004393234.1| DnaA-like protein hda [Aeromonas veronii B565]
 gi|328805418|gb|AEB50617.1| DnaA-like protein hda [Aeromonas veronii B565]
          Length = 233

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 25/237 (10%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWP----SRVVILVGPSGSG 76
            +  QL  +    + +  D+  V           LI +  +      S  +   G  GSG
Sbjct: 2   KQPAQLSLA----VQLPDDETFVSFYPGNNA--HLITALKNAAIGQGSPFLYFWGAKGSG 55

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFN---DT 124
           +S L +    +  +   +    SLD            +++   V L+ ++ +  N   + 
Sbjct: 56  RSHLLHATCAEVNARDAAAAYLSLDQFEQLDPSMLDALESLPLVCLDSLEAIAGNAVWER 115

Query: 125 QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            LF   N   +    +L++T  + P   G+ LPDL SRL       +   DD+     + 
Sbjct: 116 ALFDFYNRWQEKGEGTLVVTGCSAPRKLGLQLPDLASRLDWGVSFHLEELDDEGKLSALQ 175

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                R   +   +  +++ R+ R +      ++++DN +      +T     E+L+
Sbjct: 176 LRAELRGFKLPIDVGRFLLNRLSRDMRTLLTTLNQLDNASFRAKRKLTIPFVKEILE 232


>gi|284008472|emb|CBA74956.1| DnaA-homolog protein [Arsenophonus nasoniae]
          Length = 236

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 92/233 (39%), Gaps = 16/233 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS-WPSRVVILVGP-SGSGKSCL 80
           N   QL          +    +        +  I S  + + S  +       GSGKS L
Sbjct: 4   NTPSQLSLPLSTPDDETFASFITGE-NGILLAAIKSAINQFHSSYIYFWSQQEGSGKSHL 62

Query: 81  ANIWS----DKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        K  +  +  + K    +      ++    V ++++  +  ++     LF+
Sbjct: 63  LHAACTELSQKGEAVGYVPLDKRSYFVPDVLDGMEHLALVCIDNVHCIADDEEWEIALFN 122

Query: 129 IINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +   S LL+T    P    + LPDL SRL    + K+    D+   + +     
Sbjct: 123 LYNRILENGKSCLLITGDKPPRLIDLTLPDLASRLDWGQIYKLHPLSDEDKIQALQLRAK 182

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            R   + ++++ ++++R++R       ++D++D+ ++     +T     ++LK
Sbjct: 183 LRGFELSEEVSRFVLKRLDRKTRTLFTMLDELDHASIVAQRKLTIPFVKDILK 235


>gi|301169967|emb|CBW29571.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus
           influenzae 10810]
          Length = 231

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 41  QPFFYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   KV+      R   +  + A +++ R+ R +    + +D +D  +L     +
Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     ++L 
Sbjct: 221 TIPFVKKILN 230


>gi|332288487|ref|YP_004419339.1| DNA replication initiation factor [Gallibacterium anatis UMN179]
 gi|330431383|gb|AEC16442.1| DNA replication initiation factor [Gallibacterium anatis UMN179]
          Length = 253

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 17/230 (7%)

Query: 27  QLFFSFPRCLGISRDDL--LVHSAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           Q  +  P       +        + +     L  ++         + G   SGK+ +   
Sbjct: 24  QYQYILPIYE-FDPETFDNFDSDSNQLLCNSLFKNFAHLQQNFFYIWGAKSSGKTHVLKA 82

Query: 84  ----WSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDFNDT---QLFHIIN 131
               +  + RS  +  + K+          ++    V L+D+  +  ND     +F + N
Sbjct: 83  ANNLFLQQERSAIYIPLTKTHYFSPEILEELEELDLVCLDDLGAIAGNDEWEVAIFDLFN 142

Query: 132 SIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
            I +   +LL M+A   P    + LPDL SRL      +++   DD    V+ +    + 
Sbjct: 143 RIKETGKTLLLMSADQPPQQLPIKLPDLRSRLSWGETYQLAELSDDKKAAVLQQAARKQG 202

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + +  ++A +++ R++R L +   +++K+D  +L     +T     E L 
Sbjct: 203 LELPDEVAKFLLNRLDRDLTYLFSVLEKLDKASLQAQRKLTIPFVKEQLH 252


>gi|315634909|ref|ZP_07890191.1| DnaA regulatory inactivator Hda [Aggregatibacter segnis ATCC 33393]
 gi|315476461|gb|EFU67211.1| DnaA regulatory inactivator Hda [Aggregatibacter segnis ATCC 33393]
          Length = 234

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 13/189 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114
                L G    GKS L         + +   +   L+            ++ ++ V L+
Sbjct: 44  QPFFYLWGQRSCGKSHLLKAICHHYLTHQRPALYVPLNKAQYFSPAVLENLEQQELVCLD 103

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  N   +  +F +IN I +   +LL ++A   P +    LPDL SRL    V ++
Sbjct: 104 DLQEVIGNPDWELAIFDLINRIRETGKTLLVISADQSPTNLSAHLPDLASRLTWGEVYQL 163

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
              +D     V+      R I +  + A ++ +R+ER +      ++K+D  +L     +
Sbjct: 164 MPLNDQQKITVLQLAAHQRGIELPDETANFLFKRLERDMKTLFNALEKLDQASLQAQRKL 223

Query: 231 TRSLAAEVL 239
           T     E+L
Sbjct: 224 TIPFVKEIL 232


>gi|15601882|ref|NP_244954.1| DNA replication initiation factor [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720218|gb|AAK02101.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 254

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 86/190 (45%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLE 114
            +   + G   SGKS L     + +    R   +  + KS          ++ ++ V L+
Sbjct: 64  QQFFYIWGEQSSGKSHLLKGITHHFFLLQRPAIYVPLEKSQYFSPAVLENLEQQQLVCLD 123

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           ++  +  N   +  +F + N I   +++LL ++A   P +  V LPDL SRL+     ++
Sbjct: 124 NLQAIIGNTEWELAIFDLFNRIKSVENTLLVISANQSPTALPVSLPDLASRLRWGESYQL 183

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
              +D     V+ K    R I +  ++A ++++R+ER +    + + K+D  +L     +
Sbjct: 184 VPLNDQQKIHVLQKNAHQRGIELPDEVANFLLKRLERDMKTLFEALSKLDKASLQAQRKL 243

Query: 231 TRSLAAEVLK 240
           T     E+LK
Sbjct: 244 TIPFVKEILK 253


>gi|188990770|ref|YP_001902780.1| hypothetical protein xccb100_1374 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732530|emb|CAP50724.1| replication related protein [Xanthomonas campestris pv. campestris]
          Length = 233

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 21/231 (9%)

Query: 27  QLFFSFPRCLGISRDDLLVHS----AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA- 81
           QL  +         D  +       A  QA         W    + L GPSG+GK+ LA 
Sbjct: 5   QLPLALRAPSDQRLDSYIAAPDGLIAQLQAFAA-GQLSDW----LYLAGPSGTGKTHLAL 59

Query: 82  NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHII 130
           ++ +   ++ R          A  L   L  ++ R  V L+ +D +     ++  LF   
Sbjct: 60  SVCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSVVALDGVDSIAGQREDEVALFDFH 119

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N       +LL TAR  P    + LPDL SRL     + + + DD     V+      R 
Sbjct: 120 NRARAAGITLLYTARQMPDGLALVLPDLRSRLSQCVRISLPVLDDVARAAVLRDRAQRRG 179

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +D+    +++   ER L     L+D++D  +L+    +T      VL +
Sbjct: 180 LALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAQRRVTVPFLRRVLGD 230


>gi|294140661|ref|YP_003556639.1| hypothetical protein SVI_1890 [Shewanella violacea DSS12]
 gi|293327130|dbj|BAJ01861.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 236

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 91/237 (38%), Gaps = 24/237 (10%)

Query: 23  NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR----VVILVGPSGSG 76
           N   QL      P     +       +  +    LI S  +         V L GP  SG
Sbjct: 4   NSPLQLSLPVHLPDDETFNS--YYPAAGND---ELIQSLQACAEGQVHQAVFLWGPVKSG 58

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DT 124
           ++ L +     +   + S+    L             ++    + ++D+D +  +   + 
Sbjct: 59  RTHLMHAACAHANDYQRSSFYLPLGIHASISPALLEGLEQLDLICIDDVDAIAGHPLWEE 118

Query: 125 QLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +F + N + +  D SL+++    P   G  L DL SR++     ++    D+     + 
Sbjct: 119 AIFDLYNRVSENNDCSLIVSGSVSPTDSGFGLADLVSRMQWGLNYQLQPMADEEKLAALQ 178

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +  A R + ++  +  +++ R+ R L     ++DK+D  +L     +T     ++LK
Sbjct: 179 RRAAMRGLQLEDDVGRFLLSRLARDLRTLFDVLDKLDKDSLVHQRKLTIPFVKKMLK 235


>gi|331005288|ref|ZP_08328678.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC1989]
 gi|330420898|gb|EGG95174.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC1989]
          Length = 226

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 12/225 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL    P     + ++L +  +    +  + S+     R   L G  GSG S +     
Sbjct: 3   KQLPLPMPLSAEATFENLYISESSALTISALKSFIQQDERFFYLWG-EGSGVSHVLQAIQ 61

Query: 86  DKSRSTRF--------SNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIH 134
             +                  +     +DT   V+L+D+  +      +  +FH+ N + 
Sbjct: 62  HDNPQLNIVYFPLRDMIQYPAADVLAGLDTIDVVILDDVQCICGVTEWELAVFHLYNRLR 121

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
                L++ ++  P   G+ L DL SRL+      +    D+   KV++    +  + I 
Sbjct: 122 DGQKQLVIGSQIAPRELGISLADLHSRLQWGMSYSLEALSDEDKRKVLILRSQNLGLRIS 181

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             +  +I     R L     L+ K+D+ +LS    IT     +VL
Sbjct: 182 DDVIQFIFNHYSRDLRQLMTLLHKIDSASLSEQRHITIPFVKQVL 226


>gi|187922752|ref|YP_001894394.1| DnaA regulatory inactivator Hda [Burkholderia phytofirmans PsJN]
 gi|187713946|gb|ACD15170.1| DnaA regulatory inactivator Hda [Burkholderia phytofirmans PsJN]
          Length = 256

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 11/231 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKSC 79
            QL          + D+     A  + V  +    +         R   L G SGSG++ 
Sbjct: 3   RQLTLDLGTPPPSTFDNFFAG-ANAELVTRLRELENALAAGPVADRTFYLWGESGSGRTH 61

Query: 80  LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135
           L      ++     RF+    SL +   D R  +  ++D D L       +F++ N +  
Sbjct: 62  LLQALVHEASPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRA 121

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           + +S L+ A   P        DL +RL    V  ++   D+    V+     +R I +  
Sbjct: 122 HPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEGKAAVLKHAARERGIMLAD 181

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + AY++    R +     L+D +D  +L +   +T  L   +L      +
Sbjct: 182 DVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDAEE 232


>gi|145298510|ref|YP_001141351.1| DnaA-like protein Hda [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851282|gb|ABO89603.1| DnaA-like protein hda [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 233

 Score =  158 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 25/237 (10%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWP----SRVVILVGPSGSG 76
            +  QL  +    + +  D+  V           LI +  +      S  +   G  GSG
Sbjct: 2   KQPAQLSLA----VQLPDDETFVSFYPGNNA--HLITALKNAAIGQGSPFLYFWGAKGSG 55

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFN---DT 124
           +S L +    +  +   +    SLD            +++   V L+ ++ +  N   + 
Sbjct: 56  RSHLLHATCAEVNARDAAAAYLSLDQFEQLDPSMLDALESLPLVCLDSLEAIAGNAQWER 115

Query: 125 QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            LF   N   +    +L++T  + P   G+ LPDL SRL       +   DD+     + 
Sbjct: 116 ALFDFYNRWQEKGEGTLVVTGCSAPRKLGLQLPDLASRLDWGVSFHLDELDDEGKLSALQ 175

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                R   +   +  +++ R+ R +      ++++DN +      +T     E+L+
Sbjct: 176 LRAELRGFKLPIDVGRFLLNRLSRDMRTLLTTLNQLDNASFRAKRKLTIPFVKEILE 232


>gi|117619407|ref|YP_857322.1| chromosomal replication initiator protein DnaA [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560814|gb|ABK37762.1| chromosomal replication initiator protein DnaA [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 265

 Score =  158 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 89/241 (36%), Gaps = 25/241 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWP----SRVVILVGP 72
            Q   +  QL  +    + +  D+  V           LI +  +      S  +   G 
Sbjct: 30  AQRVKQPAQLSLA----VQLPDDETFVSFYPGNNA--HLITALKNAAIGQGSPFLYFWGA 83

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFN- 122
            GSG+S L +    +  +   +    SLD            +++   V L+ ++ +  N 
Sbjct: 84  KGSGRSHLLHATCAEVNARDAAAAYLSLDQFEQLDPSMLDALESLPLVCLDSLEAIAGNA 143

Query: 123 --DTQLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
             +  LF   N   +    +L++T  + P   G+ LPDL SRL       +   DD+   
Sbjct: 144 LWERALFDFYNRWQEKGEGTLVVTGCSAPRKLGLQLPDLASRLDWGVSFHLDELDDEGKL 203

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             +      R   +   +  +++ R+ R +      ++++DN +      +T     E+L
Sbjct: 204 SALQLRAELRGFKLPIDVGRFLLNRLSRDMRTLLTTLNQLDNASFRAKRKLTIPFVKEIL 263

Query: 240 K 240
           +
Sbjct: 264 E 264


>gi|16273145|ref|NP_439382.1| DNA replication initiation factor [Haemophilus influenzae Rd KW20]
 gi|260581145|ref|ZP_05848965.1| DnaA regulatory inactivator Hda [Haemophilus influenzae RdAW]
 gi|6136705|sp|O86235|Y122B_HAEIN RecName: Full=Uncharacterized protein HI_1225.1
 gi|3212215|gb|AAC22879.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092173|gb|EEW76116.1| DnaA regulatory inactivator Hda [Haemophilus influenzae RdAW]
 gi|309972964|gb|ADO96165.1| DNA replication initiation factor Had [Haemophilus influenzae
           R2846]
          Length = 231

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 41  QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   KV+      R   +  + A +++ R+ R +    + +D +D  +L     +
Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     ++L 
Sbjct: 221 TIPFVKKILN 230


>gi|145636912|ref|ZP_01792577.1| DNA replication initiation factor [Haemophilus influenzae PittHH]
 gi|145269993|gb|EDK09931.1| DNA replication initiation factor [Haemophilus influenzae PittHH]
          Length = 231

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 41  QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   KV+      R   +  + A +++ R+ R +    K +D +D  +L     +
Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     ++L 
Sbjct: 221 TIPFVKKILN 230


>gi|296104123|ref|YP_003614269.1| ATPase regulatory factor Hda [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058582|gb|ADF63320.1| ATPase regulatory factor Hda [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 197

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 80/190 (42%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114
           S  + +    G+G+S L +    +  +   +     LD            ++    V ++
Sbjct: 7   SGYIYIWSREGAGRSHLLHAACAELSARGDAVGYVPLDKRTWFVPDVLEGMEHLSLVCID 66

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F++ N I +     LL+T    P    + LPDL SRL    + K+
Sbjct: 67  NIECVAGDEPWEMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 126

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D  +++    +
Sbjct: 127 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFDTLDQLDRASITAQRKL 186

Query: 231 TRSLAAEVLK 240
           T     ++LK
Sbjct: 187 TIPFVKDILK 196


>gi|238788119|ref|ZP_04631914.1| DnaA-homolog protein hda [Yersinia frederiksenii ATCC 33641]
 gi|238723706|gb|EEQ15351.1| DnaA-homolog protein hda [Yersinia frederiksenii ATCC 33641]
          Length = 239

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 86/232 (37%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++            +      G G+S L
Sbjct: 8   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQSH--GSYIYFWSREGGGRSHL 65

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        K  +  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 66  LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEQWEMAIFN 125

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFTTLDQLDRASITAQRKLTIPFVKEIL 237


>gi|332087942|gb|EGI93067.1| dnaA regulatory inactivator Hda [Shigella boydii 5216-82]
          Length = 225

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 80/190 (42%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
           S  + L    G+G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 35  SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 94

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F + N I +     LL+T    P    + LPDL SRL    + K+
Sbjct: 95  NIECIAGDELWEMAIFDLYNRIQESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D  +++    +
Sbjct: 155 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKL 214

Query: 231 TRSLAAEVLK 240
           T     E+LK
Sbjct: 215 TIPFVKEILK 224


>gi|261822427|ref|YP_003260533.1| DNA replication initiation factor [Pectobacterium wasabiae WPP163]
 gi|261606440|gb|ACX88926.1| DnaA regulatory inactivator Hda [Pectobacterium wasabiae WPP163]
          Length = 235

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 91/232 (39%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +         +++  AV   ++        +      G G+S L
Sbjct: 4   NTPAQLSLPLYLPDDETFASFYPGENASLLAAVN--NALYQEHGSYIYFWSREGGGRSHL 61

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        + R+  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 62  LHAACAELSRQERAVGYVPLDKRAYFVPGVLEGMEQLALVCIDNIESIAGDEEWEMAVFN 121

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 122 LYNRIQETGRARLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLSDDEKGEALQLRAR 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + ++ ++++R++R +      +D++D+ +++    +T     E+L
Sbjct: 182 LRGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 233


>gi|157144575|ref|YP_001451894.1| DNA replication initiation factor [Citrobacter koseri ATCC BAA-895]
 gi|167008785|sp|A8AD95|HDA_CITK8 RecName: Full=DnaA-homolog protein hda
 gi|157081780|gb|ABV11458.1| hypothetical protein CKO_00295 [Citrobacter koseri ATCC BAA-895]
          Length = 241

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 87/231 (37%), Gaps = 15/231 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA 81
           N   QL          +             +  + +      S  + L    G+G+S L 
Sbjct: 10  NTPAQLSLPLYLPDDETFASFWPGD-NASLLAALQNVLRQEHSGYIYLWSREGAGRSHLL 68

Query: 82  NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129
           +        +  +  +  + K    +      ++    V +++I+ +  ++     +F +
Sbjct: 69  HAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECVAGDELWEMAIFDL 128

Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      
Sbjct: 129 YNRILESGKTRLLITGDRPPRQLKLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARL 188

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R   + + +  ++++R++R +      +D++D+ +++    +T     E+L
Sbjct: 189 RGFELPEDVGRFLLKRLDREMRTLFITLDQLDHASITAQRKLTIPFVKEIL 239


>gi|237807692|ref|YP_002892132.1| DnaA regulatory inactivator Hda [Tolumonas auensis DSM 9187]
 gi|237499953|gb|ACQ92546.1| DnaA regulatory inactivator Hda [Tolumonas auensis DSM 9187]
          Length = 234

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLAN 82
           +  QL  +       +        +  Q +  + +        ++   G  GSG+S L +
Sbjct: 4   QSTQLSLAVQLPDDETFASFYPG-SNAQLITTLKNAAIGEGVPLIYFWGCRGSGRSHLLH 62

Query: 83  IWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLEDIDLLDFN---DTQLFHII 130
               +      S +   LD            ++    + L+++D +  +   +  LF++ 
Sbjct: 63  ATCAEINGNGESAVYIPLDRHDQYSPDILEGMERMPLLCLDNLDAVAGSRVWEESLFNLF 122

Query: 131 NSIHQ-YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N   +    SL+M+A T P   G+CLPDL SRL      ++   DD+     +    A R
Sbjct: 123 NRWKETSRGSLIMSASTAPRKLGLCLPDLASRLDWGVSFQLHELDDEGKLGALQLRAALR 182

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              +   +  +++ R+ R +    + +D +D+ +L     +T     EVL+
Sbjct: 183 GFKLPVDVGRFLLNRLSRDMRMLLQTLDTLDSASLHAQRKLTIPFIKEVLE 233


>gi|197285430|ref|YP_002151302.1| DNA replication initiation factor [Proteus mirabilis HI4320]
 gi|227355914|ref|ZP_03840306.1| DNA replication initiation protein A [Proteus mirabilis ATCC 29906]
 gi|269969361|sp|B4EY85|HDA_PROMH RecName: Full=DnaA-homolog protein hda
 gi|194682917|emb|CAR43293.1| DnaA-homolog protein [Proteus mirabilis HI4320]
 gi|227163902|gb|EEI48804.1| DNA replication initiation protein A [Proteus mirabilis ATCC 29906]
          Length = 248

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCL 80
           N   QL          + D           V  I +    S     +      G GKS L
Sbjct: 17  NTPSQLSLPLSLPDDETFDSFYAGE-NASLVAAIQTAIHQS-HGSYIYFWSRDGGGKSHL 74

Query: 81  ANIWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +    +      +  +  + K    +      ++    V ++++  +  ++     LF+
Sbjct: 75  LHAACAELSLAGDAVGYVPLDKRAYFVPDVLEGMEHLSLVCIDNVQCIAGDEEWELALFN 134

Query: 129 IINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N + +   + LL+T    P    + LPDL SRL    + ++    D+   + +     
Sbjct: 135 LYNRVLELGRTCLLITGDRPPRQIDLQLPDLASRLDWGQIYRLQPLSDEEKIQALQLRAK 194

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            R   + + +  ++++R++R +    +++D++D+ ++     +T     ++LK
Sbjct: 195 LRGFELPEDVGRFVLKRLDRKMRTLFEMLDELDHASIVAQRKLTIPFVKDILK 247


>gi|318606683|emb|CBY28181.1| chromosomal replication initiator protein dnaA [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|330863268|emb|CBX73393.1| DnaA-homolog protein hda [Yersinia enterocolitica W22703]
          Length = 239

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 87/232 (37%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++   +        +      G G+S L
Sbjct: 8   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQ--SAVRQSHGSYIYFWSREGGGRSHL 65

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        K  +  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 66  LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEQWEMAMFN 125

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 237


>gi|269138446|ref|YP_003295146.1| DNA replication initiation factor [Edwardsiella tarda EIB202]
 gi|267984106|gb|ACY83935.1| DNA replication initiation factor [Edwardsiella tarda EIB202]
 gi|304558472|gb|ADM41136.1| DNA replication initiation factor [Edwardsiella tarda FL6-60]
          Length = 238

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 83/230 (36%), Gaps = 13/230 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L ++        +      G G+S L +
Sbjct: 7   NTPTQLSLPLYLPDDETFASFYAGENAALLAALQNALRQEHGSYIYFWSREGGGRSHLLH 66

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  F  + K    +      ++    V +++I+ +  ++     +F++ 
Sbjct: 67  AACAELSQRGEAVGFVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEAWEMAIFNLY 126

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 127 NRIQESGRTRLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLGDEEKLQALQLRARLR 186

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + +  ++++R++R +      +D++D  +++    +T     E L
Sbjct: 187 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASIAAQRKLTIPFVKETL 236


>gi|294671139|ref|ZP_06735994.1| hypothetical protein NEIELOOT_02847 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307247|gb|EFE48490.1| hypothetical protein NEIELOOT_02847 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 260

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 11/230 (4%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +N   QL F F R      D  L  +A  + + ++        + V + G  GSGKS L 
Sbjct: 36  QNAVNQLIFDFARSDYPGFDKFL-GTANRELIYVLQQAQD---QFVYVWGQRGSGKSHLL 91

Query: 82  NIWSDKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFNDTQL-FHIINSIHQ- 135
             W  ++R      +    ++  +D    + + + ++  D L  ++  L F I N     
Sbjct: 92  KAWVAQAREQGHHAVYIDAETAPLDETALSAEYLAVDGADRLQADEQALLFEIFNRFRNG 151

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
               LL++A   P    V   DL +R+    V  I    D+     +V M   RQ+ ++ 
Sbjct: 152 ARGRLLLSADVPPQQLTVR-EDLRTRMGNCLVYDIKPLGDEEKIDALVGMAGARQLALEP 210

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           ++  Y++    R +    +++D + + A +    IT  L  ++LK+    
Sbjct: 211 EIFRYLLTYWRRDMDSLVQMLDTLCHYAATTRRRITLPLLRQLLKQQDTP 260


>gi|253687526|ref|YP_003016716.1| DnaA regulatory inactivator Hda [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754104|gb|ACT12180.1| DnaA regulatory inactivator Hda [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 235

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 88/231 (38%), Gaps = 15/231 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLA 81
           N   QL          +             +  I++         +      G G+S L 
Sbjct: 4   NTPAQLSLPLYLPDDETFASFYPGE-NASLLAAINNALHQEHGSYIYFWSREGGGRSHLL 62

Query: 82  NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129
           +        + R+  +  + K    +      ++    V +++I+ +  ++     +F++
Sbjct: 63  HAACAELSRQERAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEEWEMAVFNL 122

Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +     LL+T    P    + LPDL SRL    + K+    DD   + +      
Sbjct: 123 YNRIQETGRARLLITGDRPPRQLNLHLPDLASRLDWGQIYKLQPLSDDEKGEALQLRARL 182

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R   + + ++ ++++R++R +      +D++D+ +++    +T     E+L
Sbjct: 183 RGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 233


>gi|332162583|ref|YP_004299160.1| DNA replication initiation factor [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666813|gb|ADZ43457.1| DNA replication initiation factor [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 235

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 87/232 (37%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++   +        +      G G+S L
Sbjct: 4   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQ--SAVRQSHGSYIYFWSREGGGRSHL 61

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        K  +  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 62  LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEQWEMAMFN 121

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 122 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 182 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233


>gi|309784767|ref|ZP_07679400.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 1617]
 gi|308927137|gb|EFP72611.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 1617]
          Length = 197

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 80/190 (42%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
           S  + L    G+G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 7   SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 66

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F + N I +     LL+T    P    + LPDL SRL    + K+
Sbjct: 67  NIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 126

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D  +++    +
Sbjct: 127 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKL 186

Query: 231 TRSLAAEVLK 240
           T     E+LK
Sbjct: 187 TIPFVKEILK 196


>gi|261340795|ref|ZP_05968653.1| DnaA regulatory inactivator Hda [Enterobacter cancerogenus ATCC
           35316]
 gi|288317219|gb|EFC56157.1| DnaA regulatory inactivator Hda [Enterobacter cancerogenus ATCC
           35316]
          Length = 197

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 80/190 (42%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114
           S  + +    G+G+S L +    +  +   +     LD            ++    V ++
Sbjct: 7   SGYIYIWSREGAGRSHLLHAACAELSARGDAVGYVPLDKRTWFVPEVLEGMEHLSLVCID 66

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F++ N I +     LL+T    P    + LPDL SRL    + K+
Sbjct: 67  NIECVAGDEPWEMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 126

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D  +++    +
Sbjct: 127 QPLSDEDKLQALQLRSRLRGFELPEDVGRFLLKRLDREMRTLFDTLDQLDRASITAQRKL 186

Query: 231 TRSLAAEVLK 240
           T     ++LK
Sbjct: 187 TIPFVKDILK 196


>gi|167854501|ref|ZP_02477282.1| hypothetical protein HPS_01939 [Haemophilus parasuis 29755]
 gi|167854256|gb|EDS25489.1| hypothetical protein HPS_01939 [Haemophilus parasuis 29755]
          Length = 236

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 91/234 (38%), Gaps = 20/234 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL     +    + D+    +++     L  ++         + G   SGKS L    S
Sbjct: 1   MQLTLPIHQIDDDTFDNFYAENSLLLLGSLRQNFVDVQQPFFYIWGGKSSGKSHLLKAVS 60

Query: 86  DKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFNDT---QLFHIINSI 133
           +     + S     LD             D    V L+DI  +  ++     +F + N I
Sbjct: 61  NHYLLNQQSATYIPLDKSHYFAPTVLDNGDQLDVVCLDDIQAVAGDEEWELAIFDLFNQI 120

Query: 134 HQYDSS--------LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            +            LL++A   P    + LPDL SRL    V +++  DD+    ++ + 
Sbjct: 121 REQQGLFNQGKKTLLLISADCPPHQLAIHLPDLRSRLTWGEVYRLADLDDEQKRIILQRN 180

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             ++ + +  ++A ++++R++R L      +  +D+ +L     +T     E+L
Sbjct: 181 ARNKGLELSDEVANFLLKRLDRDLQALMHKLMLLDHASLQAQRKLTLPFVKEIL 234


>gi|311694193|gb|ADP97066.1| DNA replication initiation factor [marine bacterium HP15]
          Length = 232

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 15/229 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLAN 82
             QL            D+         A + ++S    P    VV+L G + +GKS L  
Sbjct: 3   ASQLVLGVKLRDDARFDNFH-GDRNTGAAQRLESVCQQPHDMPVVVLCGDADTGKSHLLQ 61

Query: 83  IWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHII 130
                      + +  S+  +          ++T + V L+D+D +      +  +FH+ 
Sbjct: 62  AVCHLGEKQGRAAVCISIAELEPFGPDALSGLETHEIVCLDDVDRIAGQRVWEEAIFHLY 121

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N I      LL++    P S    LPDL SR     V+++ +  D+    ++      R 
Sbjct: 122 NRILDRGGLLLVSLADLPASLPFELPDLISRFSHGLVIQLGIYRDEDRLTILRARAEKRG 181

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + +   +A+YI++R  R L     ++D +D  +L     +T      V+
Sbjct: 182 LVMADDVASYIMRRAPRRLGDLLGILDILDENSLQAQRRLTIPFVKTVM 230


>gi|227328295|ref|ZP_03832319.1| DNA replication initiation factor [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 248

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 91/232 (39%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +         +++  AV   ++        +      G G+S L
Sbjct: 17  NTPAQLSLPLYLPDDETFASFYPGENASLLAAVN--NALYQEHGSYIYFWSREGGGRSHL 74

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        + R+  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 75  LHAACAELSRQERAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEEWEMAVFN 134

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 135 LYNRIQETGRARLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLSDDEKGEALQLRAR 194

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + ++ ++++R++R +      +D++D+ +++    +T     E+L
Sbjct: 195 LRGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 246


>gi|219872144|ref|YP_002476519.1| DNA replication initiation factor [Haemophilus parasuis SH0165]
 gi|219692348|gb|ACL33571.1| DNA replication initiation factor/chromosomal replication initiator
           DnaA [Haemophilus parasuis SH0165]
          Length = 246

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 91/233 (39%), Gaps = 20/233 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL     +    + D+    +++     L  ++         + G   SGKS L    S+
Sbjct: 12  QLTLPIHQIDDDTFDNFYAENSLLLLGSLRQNFVDVQQPFFYIWGGKSSGKSHLLKAVSN 71

Query: 87  KSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFNDT---QLFHIINSIH 134
                + S     LD             D    V L+DI  +  ++     +F + N I 
Sbjct: 72  HYLLNQQSATYIPLDKSHYFAPTVLDNGDQLDVVCLDDIQAVAGDEEWELAIFDLFNQIR 131

Query: 135 QYDSS--------LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           +            LL++A   P    + LPDL SRL    V +++  DD+    ++ +  
Sbjct: 132 EQQGLFNQGKKTLLLISADCPPHQLAIHLPDLRSRLTWGEVYRLADLDDEQKRIILQRNA 191

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            ++ + +  ++A ++++R++R L      +  +D+ +L     +T     E+L
Sbjct: 192 RNKGLELSDEVANFLLKRLDRDLQALMHKLMLLDHASLQAQRKLTLPFVKEIL 244


>gi|296161794|ref|ZP_06844596.1| DnaA regulatory inactivator Hda [Burkholderia sp. Ch1-1]
 gi|295887958|gb|EFG67774.1| DnaA regulatory inactivator Hda [Burkholderia sp. Ch1-1]
          Length = 256

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 9/230 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G SGSG++ L
Sbjct: 3   RQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDNALAAGPVADRTFYIWGESGSGRTHL 62

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                 ++     RF+    SL +   D R  +  ++D D L       +F++ N +  +
Sbjct: 63  LQALVHEAPPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRAH 122

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            +S L+ A   P        DL +RL    V  ++   D+    V+     +R I +   
Sbjct: 123 PTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLTPLPDEDKAAVLKHAARERGIMLADD 182

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + AY++    R +     L+D +D  +L +   +T  L   +L      +
Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDAEE 232


>gi|114798512|ref|YP_760956.1| hypothetical protein HNE_2261 [Hyphomonas neptunium ATCC 15444]
 gi|114738686|gb|ABI76811.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 243

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 5/227 (2%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           ++   Q   SFP       D L+     E AV L     +W +  + + GP+  G + LA
Sbjct: 9   QDGPAQPLLSFPV-PVAHWDGLISGGPNEAAVGLASRPEAWATHALCVTGPARCGLTYLA 67

Query: 82  NIWSDKSRSTRFSNI---AKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYD 137
             W+ +      +     A  L ++       V L+D+D++    D  L    N I    
Sbjct: 68  RAWAGRFGGQYMTAAEFGALKLGALDGLAGGYVALDDVDMIAARRDEPLLLFYNMIAAKG 127

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             +L+ A T P  W   + DL SRL +  V +IS PD+  +   +    A R + +  + 
Sbjct: 128 GRVLLVAHTGPAGWRTGIADLRSRLNSMPVAEISQPDEAHVRARLRAAAAQRFMKLSPET 187

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             Y+V R++ S    E L+D++       G     +LA  VL+   +
Sbjct: 188 INYLVPRIDLSYEAIETLMDRLSGEVSIAGKAPGLALARLVLEGLDE 234


>gi|238919123|ref|YP_002932637.1| DNA replication initiation factor [Edwardsiella ictaluri 93-146]
 gi|238868691|gb|ACR68402.1| DnaA regulatory inactivator Hda, putative [Edwardsiella ictaluri
           93-146]
          Length = 238

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 83/230 (36%), Gaps = 13/230 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L ++        +      G G+S L +
Sbjct: 7   NTPTQLSLPLYLPDDETFSSFYAGENAALLAALQNALRQEHGSYIYFWSREGGGRSHLLH 66

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFHII 130
                   +  +  F  + K    +      ++    V +++I+ +  +   +  +F++ 
Sbjct: 67  AACAELSQRGEAVGFVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDGAWEMAIFNLY 126

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 127 NRIQESGRTRLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLGDEEKLQALQLRARLR 186

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + +  ++++R++R +      +D++D  +++    +T     E L
Sbjct: 187 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASIAAQRKLTIPFVKETL 236


>gi|148825820|ref|YP_001290573.1| DNA replication initiation factor [Haemophilus influenzae PittEE]
 gi|148715980|gb|ABQ98190.1| hypothetical protein CGSHiEE_03865 [Haemophilus influenzae PittEE]
          Length = 231

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114
                + G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+
Sbjct: 41  QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + ++
Sbjct: 101 DLQSVIGNDEWELAIFDLFNQIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   D+   KV+      R   +  + A +++ R+ R +    K +D +D  +L     +
Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNL 220

Query: 231 TRSLAAEVLK 240
           T     ++L 
Sbjct: 221 TIPFVKKILN 230


>gi|330007332|ref|ZP_08305940.1| DnaA regulatory inactivator Hda [Klebsiella sp. MS 92-3]
 gi|328535477|gb|EGF61942.1| DnaA regulatory inactivator Hda [Klebsiella sp. MS 92-3]
          Length = 225

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 81/190 (42%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
           S  + +    G+G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 35  SGYIYIWSREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLEGMEQLALVCID 94

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F++ N I +     LL+T    P    + LPDL SRL    + K+
Sbjct: 95  NIECVAGDEPWEMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D+ +++    +
Sbjct: 155 QPLSDEDKLQALQLRARLRGFEMPEDVCRFLLKRLDREMRSLFMTLDQLDHASITAQRKL 214

Query: 231 TRSLAAEVLK 240
           T      +LK
Sbjct: 215 TIPFVKAILK 224


>gi|146312625|ref|YP_001177699.1| DNA replication initiation factor [Enterobacter sp. 638]
 gi|145319501|gb|ABP61648.1| regulatory inactivation of DnaA Hda protein [Enterobacter sp. 638]
          Length = 197

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 81/190 (42%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
           S  + +    G+G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 7   SGYIYIWSREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 66

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F++ N I +     LL+T    P    + LPDL SRL    + K+
Sbjct: 67  NIECIAGDEQWEMAMFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 126

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D+ +++    +
Sbjct: 127 QPLSDEDKLQALQLRSRLRGFELPEDVGRFLLKRLDREMRTLFDTLDQLDHASITAQRKL 186

Query: 231 TRSLAAEVLK 240
           T     + LK
Sbjct: 187 TIPFVKDTLK 196


>gi|289664537|ref|ZP_06486118.1| hypothetical protein XcampvN_16063 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289667896|ref|ZP_06488971.1| hypothetical protein XcampmN_05173 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 233

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 25/233 (10%)

Query: 27  QLFFSFPRCLGISRDDLLVHSA------IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           QL  +         D  +             A   +  W       + L G +G+GK+ L
Sbjct: 5   QLPLALRAPPDQRFDSYIAAPDGLLTQLQALAAGQVSDW-------LYLSGSAGTGKTHL 57

Query: 81  A---NIWSDKSRSTR----FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFH 128
           A      ++++  T         A  L   L  ++ R  V L+ ++ +     ++  LF 
Sbjct: 58  ALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFD 117

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N       +LL TAR  P    + LPDL SRL     + + + DD     V+      
Sbjct: 118 FHNRARAAGITLLYTARQMPDGLALVLPDLHSRLSQCIRIGLPVLDDAARAAVLRDRAQR 177

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           R + +D+    +++   ER L     L+D++D  +L+    IT      VL++
Sbjct: 178 RGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAKRRITVPFLRRVLED 230


>gi|323524829|ref|YP_004226982.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1001]
 gi|323381831|gb|ADX53922.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1001]
          Length = 247

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + ++    +  E   RL +   +  + P   R   + G +GSG++ L
Sbjct: 3   RQLTLDLGTPPPSTFENFFAGTNAELVTRLRELDSALAAGPVADRTFYIWGEAGSGRTHL 62

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                 ++     RF+    SL +   D R  +  ++D D L       +F++ N +  +
Sbjct: 63  LQALVHEAPPGHARFAGPQSSLAAFGFDPRIALYAIDDCDGLSAAQQIAVFNLFNEVRAH 122

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            +S L+ A   P        DL +RL    V  ++   D+    V+ +   +R I +   
Sbjct: 123 PTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEAKAAVLKRAARERGIMLADD 182

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + AY++    R +     L+D +D  +L +   +T  L   +L    Q
Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPGQ 230


>gi|237749033|ref|ZP_04579513.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380395|gb|EEO30486.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 224

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 5/223 (2%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR--VVILVGPSGSGKSCLANI 83
           +QL  +       S D  L      + V L+       SR   V L G + +GK+ L   
Sbjct: 2   QQLLLNLDTGNAPSLDTYLTGQ-NGEVVHLLREIAYRTSREHFVYLWGDNATGKTHLLKA 60

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLM 142
            S  S +    + A   D          LL+D + LD       F++ N + + +  ++ 
Sbjct: 61  LSQFSPARYIPSDAPETDFSYSPQCNLYLLDDCERLDSQKQIAAFNLFNQVRENNGYMIT 120

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           +    P++  +   DL SRL    V +I    D+     + +    R   I   +  Y++
Sbjct: 121 SGPCTPLALDLR-DDLKSRLCWGLVYQIKSLSDEEKMAALNEQARQRGFTISPGVLPYLI 179

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
              +R +     ++D +D  +L     IT  L  ++L++ Q+ 
Sbjct: 180 THYQRDMHSLSMILDALDRYSLQTKRTITLPLLHDLLQQKQEP 222


>gi|187775811|ref|ZP_02798598.2| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4196]
 gi|189405751|ref|ZP_02823873.2| DnaA family protein Hda [Escherichia coli O157:H7 str. EC508]
 gi|194432059|ref|ZP_03064348.1| DnaA family protein Hda [Shigella dysenteriae 1012]
 gi|293415759|ref|ZP_06658402.1| DnaA regulatory inactivator Hda [Escherichia coli B185]
 gi|312967773|ref|ZP_07781988.1| dnaA regulatory inactivator Hda [Escherichia coli 2362-75]
 gi|312973265|ref|ZP_07787437.1| dnaA regulatory inactivator Hda [Escherichia coli 1827-70]
 gi|331658634|ref|ZP_08359578.1| DnaA regulatory inactivator Hda [Escherichia coli TA206]
 gi|331664053|ref|ZP_08364963.1| DnaA regulatory inactivator Hda [Escherichia coli TA143]
 gi|331669238|ref|ZP_08370086.1| DnaA regulatory inactivator Hda [Escherichia coli TA271]
 gi|331684138|ref|ZP_08384734.1| DnaA regulatory inactivator Hda [Escherichia coli H299]
 gi|187770564|gb|EDU34408.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4196]
 gi|189378688|gb|EDU97104.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC508]
 gi|194419588|gb|EDX35668.1| DnaA family protein Hda [Shigella dysenteriae 1012]
 gi|291433407|gb|EFF06386.1| DnaA regulatory inactivator Hda [Escherichia coli B185]
 gi|310331860|gb|EFP99095.1| dnaA regulatory inactivator Hda [Escherichia coli 1827-70]
 gi|312287970|gb|EFR15875.1| dnaA regulatory inactivator Hda [Escherichia coli 2362-75]
 gi|313650956|gb|EFS15356.1| dnaA regulatory inactivator Hda [Shigella flexneri 2a str. 2457T]
 gi|315615739|gb|EFU96371.1| dnaA regulatory inactivator Hda [Escherichia coli 3431]
 gi|320185194|gb|EFW59974.1| Chromosomal replication initiator protein DnaA [Shigella flexneri
           CDC 796-83]
 gi|323156100|gb|EFZ42259.1| dnaA regulatory inactivator Hda [Escherichia coli EPECa14]
 gi|323159349|gb|EFZ45334.1| dnaA regulatory inactivator Hda [Escherichia coli E128010]
 gi|323169062|gb|EFZ54739.1| dnaA regulatory inactivator Hda [Shigella sonnei 53G]
 gi|323170235|gb|EFZ55888.1| dnaA regulatory inactivator Hda [Escherichia coli LT-68]
 gi|323177383|gb|EFZ62971.1| dnaA regulatory inactivator Hda [Escherichia coli 1180]
 gi|323184446|gb|EFZ69821.1| dnaA regulatory inactivator Hda [Escherichia coli 1357]
 gi|323188212|gb|EFZ73505.1| dnaA regulatory inactivator Hda [Escherichia coli RN587/1]
 gi|323936388|gb|EGB32678.1| DnaA regulatory inactivator Hda [Escherichia coli E1520]
 gi|323941245|gb|EGB37430.1| DnaA regulatory inactivator Hda [Escherichia coli E482]
 gi|323944717|gb|EGB40784.1| DnaA regulatory inactivator Hda [Escherichia coli H120]
 gi|323949483|gb|EGB45371.1| DnaA regulatory inactivator Hda [Escherichia coli H252]
 gi|323955733|gb|EGB51491.1| DnaA regulatory inactivator Hda [Escherichia coli H263]
 gi|323961290|gb|EGB56902.1| DnaA regulatory inactivator Hda [Escherichia coli H489]
 gi|323967940|gb|EGB63352.1| DnaA regulatory inactivator Hda [Escherichia coli M863]
 gi|323970981|gb|EGB66230.1| DnaA regulatory inactivator Hda [Escherichia coli TA007]
 gi|323977326|gb|EGB72412.1| DnaA regulatory inactivator Hda [Escherichia coli TW10509]
 gi|324118160|gb|EGC12057.1| DnaA regulatory inactivator Hda [Escherichia coli E1167]
 gi|326344976|gb|EGD68720.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. 1044]
 gi|327252146|gb|EGE63818.1| dnaA regulatory inactivator Hda [Escherichia coli STEC_7v]
 gi|331054299|gb|EGI26326.1| DnaA regulatory inactivator Hda [Escherichia coli TA206]
 gi|331059852|gb|EGI31829.1| DnaA regulatory inactivator Hda [Escherichia coli TA143]
 gi|331064432|gb|EGI36343.1| DnaA regulatory inactivator Hda [Escherichia coli TA271]
 gi|331079090|gb|EGI50292.1| DnaA regulatory inactivator Hda [Escherichia coli H299]
 gi|332089745|gb|EGI94846.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 155-74]
 gi|332092792|gb|EGI97861.1| dnaA regulatory inactivator Hda [Shigella boydii 3594-74]
 gi|332344316|gb|AEE57650.1| DNA-A regulatory inactivation protein [Escherichia coli UMNK88]
 gi|332755140|gb|EGJ85505.1| dnaA regulatory inactivator Hda [Shigella flexneri 4343-70]
 gi|332755541|gb|EGJ85905.1| dnaA regulatory inactivator Hda [Shigella flexneri K-671]
 gi|332756537|gb|EGJ86888.1| dnaA regulatory inactivator Hda [Shigella flexneri 2747-71]
 gi|333001633|gb|EGK21201.1| dnaA regulatory inactivator Hda [Shigella flexneri VA-6]
 gi|333001784|gb|EGK21350.1| dnaA regulatory inactivator Hda [Shigella flexneri K-218]
 gi|333002286|gb|EGK21850.1| dnaA regulatory inactivator Hda [Shigella flexneri K-272]
 gi|333016108|gb|EGK35440.1| dnaA regulatory inactivator Hda [Shigella flexneri K-227]
 gi|333016366|gb|EGK35697.1| dnaA regulatory inactivator Hda [Shigella flexneri K-304]
          Length = 225

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 80/190 (42%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
           S  + L    G+G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 35  SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 94

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F + N I +     LL+T    P    + LPDL SRL    + K+
Sbjct: 95  NIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D  +++    +
Sbjct: 155 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKL 214

Query: 231 TRSLAAEVLK 240
           T     E+LK
Sbjct: 215 TIPFVKEILK 224


>gi|91774560|ref|YP_544316.1| regulatory inactivation of DnaA Hda protein [Methylobacillus
           flagellatus KT]
 gi|91708547|gb|ABE48475.1| regulatory inactivation of DnaA Hda protein [Methylobacillus
           flagellatus KT]
          Length = 205

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 20/220 (9%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANI 83
           +QL          S D+  V     +A+  +         +R + L G +G GK+ L   
Sbjct: 2   KQLLLDIQPPAAPSLDNF-VTGRNAEALFQLRRTVLEHDDARFIYLWGETGCGKTHLIQA 60

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLM 142
            +  + ++                   + ++D+ LL  +D   LF + N + +    L++
Sbjct: 61  CNALASASGLD---------------MICVDDVHLLSNDDQVALFDLYNQLRESGGRLIV 105

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           +    P   G+   DL +RL      ++    D+   + +      R + +  ++  Y +
Sbjct: 106 SGLAAPSQMGLR-DDLATRLAWGLSYQLHPLSDEEKTQALKNHAEARGMKLPDEVLDYCL 164

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + + R +      +D +D  +L     +T  L  ++L+ +
Sbjct: 165 RHLRRDMPSLIATIDALDEWSLISKRAVTLPLLKQLLQTS 204


>gi|50120196|ref|YP_049363.1| DNA replication initiation factor [Pectobacterium atrosepticum
           SCRI1043]
 gi|57012731|sp|Q6D7R8|HDA_ERWCT RecName: Full=DnaA-homolog protein hda
 gi|49610722|emb|CAG74167.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 238

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 92/232 (39%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +         +++  AV   ++        +      G G+S L
Sbjct: 7   NTPAQLSLPLYLPDDETFASFYPGENASLLAAVN--NALYQEHGSYIYFWSREGGGRSHL 64

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        + R+  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 65  LHAACAELSRQERAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEAWEMAVFN 124

Query: 129 IINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +   +LL+ T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 125 LYNRIQETGRALLLITGDRPPRQLNIRLPDLASRLDWGQIYKLQPLSDDEKGEALQLRAR 184

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + ++ ++++R++R +      +D++D+ +++    +T     E+L
Sbjct: 185 LRGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 236


>gi|123441472|ref|YP_001005458.1| DNA replication initiation factor [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|254800193|sp|A1JL00|HDA_YERE8 RecName: Full=DnaA-homolog protein hda
 gi|122088433|emb|CAL11225.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 239

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 86/232 (37%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++            +      G G+S L
Sbjct: 8   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQSH--GSYIYFWSREGGGRSHL 65

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        K  +  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 66  LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEQWEMAMFN 125

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 237


>gi|238763600|ref|ZP_04624561.1| DnaA-homolog protein hda [Yersinia kristensenii ATCC 33638]
 gi|238698232|gb|EEP90988.1| DnaA-homolog protein hda [Yersinia kristensenii ATCC 33638]
          Length = 239

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 86/232 (37%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++            +      G G+S L
Sbjct: 8   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQSH--GSYIYFWSREGGGRSHL 65

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        K  +  +  + K    +      ++    + +++I+ +  ++     +F+
Sbjct: 66  LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALICIDNIECIAGDEQWEMAIFN 125

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 237


>gi|294635428|ref|ZP_06713917.1| DnaA regulatory inactivator Hda [Edwardsiella tarda ATCC 23685]
 gi|291091197|gb|EFE23758.1| DnaA regulatory inactivator Hda [Edwardsiella tarda ATCC 23685]
          Length = 238

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 84/230 (36%), Gaps = 13/230 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L ++     +  +      G G+S L +
Sbjct: 7   NTPTQLSLPLYLPDDETFASFYAGENAALLAALQNALRQEHASYIYFWSREGGGRSHLLH 66

Query: 83  IWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
               +      +  F  + K    +      ++    V +++I+ +  ++     +F++ 
Sbjct: 67  AACAEMSQHGEAVGFVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEAWEMAIFNLY 126

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+   + +      R
Sbjct: 127 NRIQESGRSRLLITGDRPPRQLNLHLPDLASRLDWGQIYKLQPLGDEEKLQALQLRARLR 186

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + +  ++++R++R +      +D++D  +++    +T     E L
Sbjct: 187 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKETL 236


>gi|238792097|ref|ZP_04635733.1| DnaA-homolog protein hda [Yersinia intermedia ATCC 29909]
 gi|238728728|gb|EEQ20246.1| DnaA-homolog protein hda [Yersinia intermedia ATCC 29909]
          Length = 239

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 85/232 (36%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++            +      G G+S L
Sbjct: 8   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSTVHQSH--GSYIYFWSREGGGRSHL 65

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        K  +  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 66  LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEQWEMAIFN 125

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     E L
Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKETL 237


>gi|170767200|ref|ZP_02901653.1| DnaA regulatory inactivator Hda [Escherichia albertii TW07627]
 gi|170123534|gb|EDS92465.1| DnaA regulatory inactivator Hda [Escherichia albertii TW07627]
          Length = 225

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 81/190 (42%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
           S  + L    G+G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 35  SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEQLSLVCID 94

Query: 115 DIDLLDFNDT---QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F + N I +   + LL+T    P    + LPDL SRL    + K+
Sbjct: 95  NIECIAGDELWEMAIFDLYNRILESGNTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D  +++    +
Sbjct: 155 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKL 214

Query: 231 TRSLAAEVLK 240
           T     E+LK
Sbjct: 215 TIPFVKEILK 224


>gi|220935417|ref|YP_002514316.1| regulatory inactivation of DnaA Hda protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996727|gb|ACL73329.1| regulatory inactivation of DnaA Hda protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 233

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 18/233 (7%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLAN 82
           +  QL        G   D      A   A+  + +       R + L G  GSGK+ L  
Sbjct: 2   QARQLTLDVTLPDGSDFDAFHAG-ANGLALDSLRALARGEGERQLYLYGEPGSGKTHLLQ 60

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--------------NDTQLFH 128
               +  ++ +   A  L + L+       LE +D LD                +T LF+
Sbjct: 61  AACHE--ASLWGRRAAYLPAFLLRQGGAHALEGLDQLDLVCLDGISALVGCVETETGLFN 118

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           +IN+    D+ L++     P +    LPDL SRL    V ++   DD     V+V+    
Sbjct: 119 LINASRCRDTRLVLADTHAPRALSAALPDLGSRLVWGPVFQLQPLDDAGKRAVLVERARR 178

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           R   +  ++  ++++   R L      +++++  +L     +T   A  VL E
Sbjct: 179 RGFDLPGEVGEFLLRTCARDLATLMVQLERLEQASLRDQRRVTLPFARAVLGE 231


>gi|227115371|ref|ZP_03829027.1| DNA replication initiation factor [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 248

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 91/232 (39%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +         +++  AV   ++        +      G G+S L
Sbjct: 17  NTPAQLSLPLYLPDDETFASFYPGENASLLAAVN--NALYQEHGSYIYFWSREGGGRSHL 74

Query: 81  ANIWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +    +     R+  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 75  LHAACAELSRLERAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEEWEMAVFN 134

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 135 LYNRIQETGRARLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLSDDEKGEALQLRAR 194

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + ++ ++++R++R +      +D++D+ +++    +T     E+L
Sbjct: 195 LRGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 246


>gi|238756100|ref|ZP_04617422.1| DnaA-homolog protein hda [Yersinia ruckeri ATCC 29473]
 gi|238705706|gb|EEP98101.1| DnaA-homolog protein hda [Yersinia ruckeri ATCC 29473]
          Length = 235

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++            +      G G+S L
Sbjct: 4   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQAAVHQSH--GSYIYFWSREGGGRSHL 61

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        +  +  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 62  LHAACAELSQQGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEEWEMAIFN 121

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 122 LYNRIVETGRTRLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     ++L
Sbjct: 182 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKDIL 233


>gi|261345966|ref|ZP_05973610.1| DnaA regulatory inactivator Hda [Providencia rustigianii DSM 4541]
 gi|282566054|gb|EFB71589.1| DnaA regulatory inactivator Hda [Providencia rustigianii DSM 4541]
          Length = 204

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 77/190 (40%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114
              +      G GKS L +    +      +     LD            ++    V ++
Sbjct: 14  GSYIYYWSREGGGKSHLLHAACAELSEQGIAVGYVPLDKRAYFVPEVLEGMEHLSLVCID 73

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I  +  ++     +F++ N I +   + LL+T    P    + LPDL SRL    + K+
Sbjct: 74  NIQCIAGDEEWEMAIFNLYNRILEIGRTCLLITGDRPPRQIDLKLPDLASRLDWGQIYKL 133

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+     +    + R   + + +  ++++R++R +     +++K+D+ ++     +
Sbjct: 134 HPLSDEDKIHALQLRASIRGFELPEDVCRFVLKRLDRKMGTLFDILNKLDHASIVAQRKM 193

Query: 231 TRSLAAEVLK 240
           T     ++LK
Sbjct: 194 TIPFVKDILK 203


>gi|91781892|ref|YP_557098.1| hypothetical protein Bxe_A3953 [Burkholderia xenovorans LB400]
 gi|91685846|gb|ABE29046.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 256

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 9/230 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G SGSG++ L
Sbjct: 3   RQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDNALAAGPVADRTFYIWGESGSGRTHL 62

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                 ++     RF+    SL +   D R  +  ++D D L       +F++ N +  +
Sbjct: 63  LQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRAH 122

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            +S L+ A   P        DL +RL    V  ++   D+    V+     +R I +   
Sbjct: 123 PTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEDKAAVLKHAARERGIMLADD 182

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + AY++    R +     L+D +D  +L +   +T  L   +L      +
Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDAEE 232


>gi|238760496|ref|ZP_04621632.1| DnaA-homolog protein hda [Yersinia aldovae ATCC 35236]
 gi|238701293|gb|EEP93874.1| DnaA-homolog protein hda [Yersinia aldovae ATCC 35236]
          Length = 239

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 86/232 (37%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++            +      G G+S L
Sbjct: 8   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQSH--GSYIYFWSREGGGRSHL 65

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        +  +  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 66  LHAACAELSQQGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEMWEMAMFN 125

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 237


>gi|161612751|ref|YP_001586716.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197301043|ref|ZP_02663254.2| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205356906|ref|ZP_02343245.2| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|161362115|gb|ABX65883.1| hypothetical protein SPAB_00450 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197288946|gb|EDY28319.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205325251|gb|EDZ13090.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|321222802|gb|EFX47873.1| Chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 225

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 81/190 (42%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
           S  + L    G+G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 35  SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 94

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F + N I +     LL+T    P    + LPDL SRL    + K+
Sbjct: 95  NIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D+ +++    +
Sbjct: 155 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKL 214

Query: 231 TRSLAAEVLK 240
           T     E+LK
Sbjct: 215 TIPFVKEILK 224


>gi|254355934|ref|ZP_04972212.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           2002721280]
 gi|148024909|gb|EDK83087.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           2002721280]
          Length = 341

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S L
Sbjct: 105 RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 164

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +     R+ +    LD++  D R  +  ++D D L D     LF++ N +  +
Sbjct: 165 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 224

Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             ++L++     P++  V   DL +RL    V  ++   D+    V+     +R I +  
Sbjct: 225 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 283

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 284 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 334


>gi|237813670|ref|YP_002898121.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei MSHR346]
 gi|254191604|ref|ZP_04898107.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254194910|ref|ZP_04901340.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei S13]
 gi|254299142|ref|ZP_04966592.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 406e]
 gi|157808753|gb|EDO85923.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 406e]
 gi|157939275|gb|EDO94945.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169651659|gb|EDS84352.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei S13]
 gi|237505318|gb|ACQ97636.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei MSHR346]
          Length = 341

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S L
Sbjct: 105 RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 164

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +     R+ +    LD++  D R  +  ++D D L D     LF++ N +  +
Sbjct: 165 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 224

Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             ++L++     P++  V   DL +RL    V  ++   D+    V+     +R I +  
Sbjct: 225 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 283

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 284 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 334


>gi|322833964|ref|YP_004213991.1| DnaA regulatory inactivator Hda [Rahnella sp. Y9602]
 gi|321169165|gb|ADW74864.1| DnaA regulatory inactivator Hda [Rahnella sp. Y9602]
          Length = 235

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++            +      G G+S L
Sbjct: 4   NTPAQLSLPLYLPDDETFASFYPGENPSLLSAIQSALHQEHGTY--IYFWSREGGGRSHL 61

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFH 128
            +        +  +  +  + K    +      ++    V +++I+ +  +   +  +FH
Sbjct: 62  LHAACAELSQRGEAVGYVPLDKRAYFVPEVLDGMEHLALVCIDNIEGIAGDDEWEAAVFH 121

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     L +T    P    + LPDL SRL    + K+    D+   + +     
Sbjct: 122 LYNRILETGRTRLFITGDRPPRQLNLSLPDLASRLDWGQIYKLQPLSDEEKLQALQLRAK 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 182 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233


>gi|119944829|ref|YP_942509.1| chromosomal replication initiator, DnaA [Psychromonas ingrahamii
           37]
 gi|119863433|gb|ABM02910.1| regulatory inactivation of DnaA Hda protein [Psychromonas
           ingrahamii 37]
          Length = 242

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 18/194 (9%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLE 114
             V+ + G SGSG+S L +    +      S     L             ++    V ++
Sbjct: 47  EPVLYMWGESGSGRSHLLHALCSEVDERGDSVAYIPLRHYQSMTLDIFENMEQVTLVCID 106

Query: 115 DIDLLDFNDT---QLFHIINS------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           DI+ +  ++     LF   N            +SL+  A   P   G+ L DL SRL+  
Sbjct: 107 DIEEIAGDEKWEKALFDFYNRWSDNKENRSSGASLVFCANHLPKQLGLKLNDLVSRLEWG 166

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
               ++  +++     +      + + +   +  +++ R+ R +      +D++DN +L 
Sbjct: 167 ACYHLTPLNEEDKLGALQLRAQLKGMKLPVDVGRFLLNRLSRDMNTLLDTLDQLDNASLE 226

Query: 226 RGMGITRSLAAEVL 239
               +T     EVL
Sbjct: 227 AKRKLTIPFVKEVL 240


>gi|317492835|ref|ZP_07951259.1| DnaA regulatory inactivator Hda [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918957|gb|EFV40292.1| DnaA regulatory inactivator Hda [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 235

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 81/230 (35%), Gaps = 13/230 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L  +        +      G G+S L +
Sbjct: 4   NTPAQLSLPLYLPDDETFASFYSGENSSLLAALQGALQQEHGTYIYFWSREGGGRSHLLH 63

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +   +     +F++ 
Sbjct: 64  AACAELSQRGEAVGYVPLDKRAYFVPEVLDGMEQLSLVCIDNIECIAGEEEWEMAIFNLY 123

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + LPDL SRL    + K+    D+     +      R
Sbjct: 124 NRILETGRTRLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLGDEDKLLALQLRSKLR 183

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 184 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233


>gi|303256718|ref|ZP_07342732.1| DnaA regulatory inactivator Hda [Burkholderiales bacterium 1_1_47]
 gi|302860209|gb|EFL83286.1| DnaA regulatory inactivator Hda [Burkholderiales bacterium 1_1_47]
          Length = 231

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 16/222 (7%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIWS 85
           QL   F      +  + +V  +  +AV +I             L G  G GK+ L     
Sbjct: 15  QLPLDFFPEKQPTLSNFIVG-SNSEAVAVISELKEGRGPQFTYLWGYEGVGKTHLVRALG 73

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFNDTQLFHIINSIHQY-DSSLLMT 143
            +S                 + R    ++++ DL      +LF + N++ ++  + L++T
Sbjct: 74  KQSEGV----------PAFDENRTIYAVDNVQDLTPEQQQELFVLYNTVREHPGTHLVVT 123

Query: 144 ARTFPVSWGVC--LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           A   P  +       DL SR     V ++S   D+   +VI++  +   + +  ++  +I
Sbjct: 124 ADRSPKDFERQGFRKDLTSRFSWGVVFELSPLSDEQKRQVILEAASQTGLKVAPEVLNWI 183

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                R +     L+  +D  A+S    +T  L  E L+  Q
Sbjct: 184 ENNFPRDMHTMSNLLHSLDRYAMSAKRAVTIPLIKEWLERNQ 225


>gi|268589312|ref|ZP_06123533.1| DnaA regulatory inactivator Hda [Providencia rettgeri DSM 1131]
 gi|291315335|gb|EFE55788.1| DnaA regulatory inactivator Hda [Providencia rettgeri DSM 1131]
          Length = 204

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 76/190 (40%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114
              +      G GKS L +    +      +     LD            ++    V ++
Sbjct: 14  GSYIYYWSREGGGKSHLLHAACAELSEQGIAVGYVPLDKRAYFVPEVLDGMEHLSLVCID 73

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I  +  ++     +F++ N I +   + LL+T    P    + LPDL SRL    + K+
Sbjct: 74  NIQCIAGDEEWEMAIFNLYNRILEIGRTCLLITGDRPPRQIELKLPDLASRLDWGQIYKL 133

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+     +      R   + + +  ++++R++R +     +++K+D+ ++     +
Sbjct: 134 HPLSDEDKIWALQLRARIRGFELPEDVCRFVLKRLDRKMGTLFDILNKLDHASIVAQRKL 193

Query: 231 TRSLAAEVLK 240
           T     ++LK
Sbjct: 194 TIPFVKDILK 203


>gi|319944441|ref|ZP_08018715.1| DNA replication initiation protein A [Lautropia mirabilis ATCC
           51599]
 gi|319742402|gb|EFV94815.1| DNA replication initiation protein A [Lautropia mirabilis ATCC
           51599]
          Length = 219

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 27/227 (11%)

Query: 27  QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCL 80
           QL   F        D+ +  +    +     L+ S         R   + GP GSGKS L
Sbjct: 4   QLTLDFGPPPPPCFDNFVPGANLECLATLRHLVQSLKHGETPAQRFFYIWGPEGSGKSHL 63

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIIN-SIHQYDS 138
           A   +                         ++++D+D         LFH  N  I Q D 
Sbjct: 64  AGALTASQC------------------PNLMVVDDVDRYSKGRQRTLFHRFNALIDQPDH 105

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           +L++     P    + LP+L SRL    V  +   DD+ L   + +   +R + + + L+
Sbjct: 106 ALVVFGNQPPARLKL-LPELVSRLSWGMVFSLQPLDDNALADALEQSARERGLNLGQDLS 164

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            Y+++   R +   + ++D +D LA +R   +T  L  + L+  +Q 
Sbjct: 165 TYLLRHTRRDMASLKTILDGLDRLAWARKKPLTLPLLKDYLQSQRQA 211


>gi|134280524|ref|ZP_01767235.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 305]
 gi|134248531|gb|EBA48614.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 305]
          Length = 341

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S L
Sbjct: 105 RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 164

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +     R+ +    LD++  D R  +  ++D D L D     LF++ N +  +
Sbjct: 165 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 224

Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             ++L++     P++  V   DL +RL    V  ++   D+    V+     +R I +  
Sbjct: 225 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 283

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 284 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 334


>gi|304413859|ref|ZP_07395276.1| ATPase involved in DNA replication initiation [Candidatus Regiella
           insecticola LSR1]
 gi|304283579|gb|EFL91974.1| ATPase involved in DNA replication initiation [Candidatus Regiella
           insecticola LSR1]
          Length = 254

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 86/231 (37%), Gaps = 15/231 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLA 81
           N   QL          +             +  I S         +      G G+S L 
Sbjct: 23  NSPAQLSLPLYLPDDETFASFYPGE-NASVLAAIQSVIHHSHGSYIYFWSGEGGGRSHLL 81

Query: 82  NI----WSDKSRSTRFSNIAKS--LDSILIDTRK---PVLLEDIDLLDF---NDTQLFHI 129
           +     +S +  +  +  + K       ++D  +    V +++I+ +      +  +F++
Sbjct: 82  HAACTEFSQRGEAVGYVPLEKRAYFVEEVLDGMEQLALVCIDNIECVAGIPQWEMAIFNL 141

Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +     LL+T    P    + LPDL SRL    + K+    DD   + +      
Sbjct: 142 YNRIQETGHTRLLITGDRPPRQLNLHLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAKL 201

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 202 RAFELPEDVGRFMLKRLDRKMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 252


>gi|85711719|ref|ZP_01042776.1| ATPase involved in DNA replication initiation [Idiomarina baltica
           OS145]
 gi|85694579|gb|EAQ32520.1| ATPase involved in DNA replication initiation [Idiomarina baltica
           OS145]
          Length = 242

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 24/243 (9%)

Query: 19  DQPKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILV 70
              K + +QL  +   P     +     +    +  VR +    + P       R+ +L 
Sbjct: 2   TAGKQQPQQLTLAVQLPDDENFTT---YLEQQNDNVVRWLKQIATKPLSETQGERLTLLS 58

Query: 71  GPSGSGKSCLANIWSDKSRST------RFSNIAKSLDSILIDTRKP---VLLEDIDLLDF 121
           GPSGSGKS L +     +           +++ +S    ++        + L+DID +  
Sbjct: 59  GPSGSGKSHLLHSIVSLAGQHTQVMYLPLADLKESNAEQVLAGLDAFNIICLDDIDTVLK 118

Query: 122 NDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           + T   +LF +IN+I   +   L+MTA        V L DL SRL+ AT  ++S  +DD 
Sbjct: 119 DPTWCYELFKLINTITDAEHCRLMMTAHASASQLSVELADLRSRLQWATAFQLSPLNDDG 178

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
               +      R + +   +A +++ R+ R +      +D++D  +++    +T     +
Sbjct: 179 KASALTLRAQWRGLQLPHDVAIFMLHRLGRDMAGLLAHLDQLDKASIAHQRKLTIPFVKQ 238

Query: 238 VLK 240
           VL 
Sbjct: 239 VLA 241


>gi|113461486|ref|YP_719555.1| DNA replication initiation factor [Haemophilus somnus 129PT]
 gi|112823529|gb|ABI25618.1| regulatory inactivation of DnaA Hda protein [Haemophilus somnus
           129PT]
          Length = 231

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114
                + G   +GK+ L    S+   +++ + I   L             ++ ++ V L+
Sbjct: 41  QPFFYIFGGKSTGKTHLLKACSNYFLASQRNAIYIPLSKAQYFSPEVLENLEQQELVCLD 100

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D   +  N   +  +F ++N I +  S+LL+ +A   PV+  + LPDL SRL    + ++
Sbjct: 101 DFHAIIGNHEWELAIFDLMNRIKESGSTLLLISANQSPVNLNISLPDLASRLSWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +  ++    +VI +    R I +    A ++++R++R +      +  +D  +L     +
Sbjct: 161 NPLNEQQKVEVIKRNAHQRGIELPDDTANFLLKRLDRDIKSLFDTLTLLDKASLQAQRKL 220

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 221 TIPFVKEILN 230


>gi|160872450|ref|ZP_02062582.1| DnaA regulatory inactivator Hda [Rickettsiella grylli]
 gi|159121249|gb|EDP46587.1| DnaA regulatory inactivator Hda [Rickettsiella grylli]
          Length = 231

 Score =  155 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 86/233 (36%), Gaps = 21/233 (9%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCL 80
             QL          S ++       E    L+D    +  R     + + G  G+G + L
Sbjct: 2   STQLILPIQPPDAHSFENFYRGQ-NEV---LLDCLQQFSLRRGESYIYIWGHPGAGCTHL 57

Query: 81  ANIWSDKSRSTRFSNIAKSLDSI----------LIDTRKPVLLEDIDLL---DFNDTQLF 127
                  ++   FS     L ++           +++   V ++D++ +      +  LF
Sbjct: 58  LQACCHTAQQYGFSVAYLPLSTLKKNNSSEILRGLESVDMVCIDDLESVVNESSWEESLF 117

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N + +    LL+ A+  P      LPDL SRL +  + ++   ++      +     
Sbjct: 118 HFYNRLQEQSRYLLIAAKHNPHQLNFSLPDLISRLSSGILFQVHALNEAERLIALQARAR 177

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            R + + +++  +++ R+ R        + ++D   L     +T  L   +LK
Sbjct: 178 LRGLELSEEVGQFLLFRLPRDSQALFSALMQLDKATLRLKRKLTIPLVKTILK 230


>gi|238752069|ref|ZP_04613553.1| DnaA-homolog protein hda [Yersinia rohdei ATCC 43380]
 gi|238709769|gb|EEQ02003.1| DnaA-homolog protein hda [Yersinia rohdei ATCC 43380]
          Length = 239

 Score =  155 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 85/232 (36%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++            +      G G+S L
Sbjct: 8   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQSH--GSYIYFWSREGGGRSHL 65

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        K  +  +  + K    +      ++    V +++I+ +   +     +F+
Sbjct: 66  LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGEEQWEMAMFN 125

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + LPDL SRL    + K+    DD   + +     
Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     ++L
Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFTTLDQLDRASITAQRKLTIPFVKDIL 237


>gi|242238513|ref|YP_002986694.1| DNA replication initiation factor [Dickeya dadantii Ech703]
 gi|242130570|gb|ACS84872.1| DnaA regulatory inactivator Hda [Dickeya dadantii Ech703]
          Length = 235

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 15/231 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81
           N   QL          + D           +  I    +      +      G G+S L 
Sbjct: 4   NTPAQLSLPLYLPDDETFDSFYPGE-NTSLLAAIHHALNQTHGSYLYFWSRQGGGRSHLL 62

Query: 82  NIWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDTQ---LFHI 129
           +    +      +  +  + K    +      ++    V +++I+ +  ++     +F++
Sbjct: 63  HAACAECSRTGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIESIAGDEQWELSMFNL 122

Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +     LL+T    P    + L DL SRL    + ++    D+   + +      
Sbjct: 123 YNRIQESGRTRLLITGDRPPRQLNLHLADLASRLDWGQIYRLQPLSDEEKGEALQLRARL 182

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R   + + ++ ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 183 RGFELPEDVSRFLLKRLDREMRTLFTTLDQLDRASITAQRKLTIPFVKEIL 233


>gi|300717926|ref|YP_003742729.1| DnaA-homolog protein [Erwinia billingiae Eb661]
 gi|299063762|emb|CAX60882.1| DnaA-homolog protein [Erwinia billingiae Eb661]
          Length = 235

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 80/230 (34%), Gaps = 13/230 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L  +               G G+S L +
Sbjct: 4   NTPAQLSLPLYLPDDETFASFWPGENPSLIAALQSALQQEHGSYFYFWSREGGGRSHLLH 63

Query: 83  IWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT---QLFHII 130
               +  +   +     LD            ++    + +++I+ +  ++     +F + 
Sbjct: 64  AACAELSARGEAVGYVPLDKRTWFVPEVLDGMEQLPLICIDNIECIAGDEPWEMAIFDLY 123

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+TA   P    + L DL SRL    + ++    D+   + +      R
Sbjct: 124 NRILETGRTRLLITADRPPRQLNLKLADLASRLDWGQIYRLQPLSDEDKLQALQLRARLR 183

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + +  ++++R++R +    + +DK+D  ++S    +T     E L
Sbjct: 184 GFELPEDVGRFLLKRLDREMRTLFETLDKLDRASISAQRKLTIPFVKEAL 233


>gi|271499675|ref|YP_003332700.1| DnaA regulatory inactivator Hda [Dickeya dadantii Ech586]
 gi|270343230|gb|ACZ75995.1| DnaA regulatory inactivator Hda [Dickeya dadantii Ech586]
          Length = 235

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 85/230 (36%), Gaps = 13/230 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               +  +        +      G G+S L +
Sbjct: 4   NTPAQLSLPLYLPDDETFASFYPGENTSLLAAIHTTLEQEHGSYIYFWSREGGGRSHLLH 63

Query: 83  IWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
               +     R+  +  + K    +      ++    V +++I+ +  ++     LF++ 
Sbjct: 64  AACAELSRLGRAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIEAIAGDEAWEMALFNLY 123

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + L DL SRL    + ++    D+   + +      R
Sbjct: 124 NRIQEGGRTRLLITGDRPPRQINLQLADLASRLDWGQIYRLQPLSDEEKGEALQLRARLR 183

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + ++ ++++R++R +      +D++D+ +++    +T     E+L
Sbjct: 184 GFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 233


>gi|170691341|ref|ZP_02882506.1| DnaA regulatory inactivator Hda [Burkholderia graminis C4D1M]
 gi|170143546|gb|EDT11709.1| DnaA regulatory inactivator Hda [Burkholderia graminis C4D1M]
          Length = 247

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 9/228 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G +GSG++ L
Sbjct: 3   RQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDSALAAGPVADRTFYIWGEAGSGRTHL 62

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                 ++     RF+    SL +   D R  +  ++D D L       +F++ N +  +
Sbjct: 63  LQALVHEAPRGHARFAGPQSSLAAFSFDPRVALYAIDDCDGLSAAQQVAVFNLFNEVRAH 122

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            +S L+     P        DL +RL    V  ++   D+    V+     +R I +   
Sbjct: 123 PTSALVATGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEGKAAVLKHAARERGIMLADD 182

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + AY++    R +     L+D +D  +L +   +T  L   +L    Q
Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPGQ 230


>gi|256822898|ref|YP_003146861.1| DnaA regulatory inactivator Hda [Kangiella koreensis DSM 16069]
 gi|256796437|gb|ACV27093.1| DnaA regulatory inactivator Hda [Kangiella koreensis DSM 16069]
          Length = 229

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 95/227 (41%), Gaps = 14/227 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA---- 81
           +QL          +  + +V    +  ++ +++     S  + +    G G+S L     
Sbjct: 2   QQLPLDIELHSDATFANFMVGE-NQLLLQKLEAICQGESDFIYIYSEQGHGRSHLLQALT 60

Query: 82  NIWSDKSRSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132
           + +S+++     + +      ++      +     V L+ I+ +  +    T +F++ N 
Sbjct: 61  HAYSEQNPDKLIAYLPLENSMLVPQMLDGLVAFDCVSLDGIEKVIADKEWQTAIFNLYNQ 120

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +   S L+T    P    + L DL SRL A  +  I   +D+    ++ +   ++ + 
Sbjct: 121 LKEQGKSFLITGLNAPSQLALELKDLKSRLSAMFIYNIKPLNDEEKLILLQRKAEEKGLE 180

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +  ++A Y++ R +R L     ++DK+D  +L     +T     EVL
Sbjct: 181 LSNEVAHYLLARQQRDLPTLLGILDKLDQASLQAKRKLTIPFIKEVL 227


>gi|295675601|ref|YP_003604125.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1002]
 gi|295435444|gb|ADG14614.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1002]
          Length = 250

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 88/230 (38%), Gaps = 11/230 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLI----DSWPSWP--SRVVILVGPSGSGKSC 79
            QL          + D+     A  + V  +    D+  S P   R   + G +GSG++ 
Sbjct: 3   RQLTLDLGTPPPSTFDNFFAG-ANAELVTRLRELDDALASGPVADRTFYIWGEAGSGRTH 61

Query: 80  LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135
           L      ++     RF+    SL +   D R  +  ++D D L       +F++ N +  
Sbjct: 62  LLQALVHEAPPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRA 121

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           + +S L+ A            DL +RL    V  ++   DD    V+ +   +R I +  
Sbjct: 122 HPTSALVAAGNAAPIGMTVREDLRTRLGWGLVFHLAPLPDDAKAAVLKRAARERGIMLAD 181

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            + AY++    R +     L+D +D  +L +   +T  L   +L      
Sbjct: 182 DVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDPA 231


>gi|183599403|ref|ZP_02960896.1| hypothetical protein PROSTU_02876 [Providencia stuartii ATCC 25827]
 gi|188021645|gb|EDU59685.1| hypothetical protein PROSTU_02876 [Providencia stuartii ATCC 25827]
          Length = 253

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 84/232 (36%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81
           N   QL          +          E  +  I    +      +      G GKS L 
Sbjct: 22  NTPSQLSLPLYLPDDETFASFYAGE-NEALLSAIKLAINQSHGSYIYYWSREGGGKSHLL 80

Query: 82  NIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHI 129
           +    +      +     LD            ++    V +++I  +  +   +  +F++
Sbjct: 81  HAACAELSEQDMAVGYVPLDKRAYFVPEVLDGMEHLSLVCIDNIQCIAGDPEWEMAVFNL 140

Query: 130 INSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +   + LL+T    P    + LPDL SRL    + K+    D+     +      
Sbjct: 141 YNRILEIGRTCLLITGDRPPRQIDLSLPDLASRLDWGQIYKLHPLSDEDKICALQLRARM 200

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R   + + +  ++++R++R +     +++K+D+ ++     +T     ++L+
Sbjct: 201 RGFELPEDVCRFVLKRLDRKMGTLFDILNKLDHASIVAQRKLTIPFVKDILQ 252


>gi|134095803|ref|YP_001100878.1| putative regulator protein [Herminiimonas arsenicoxydans]
 gi|133739706|emb|CAL62757.1| Conserved hypothetical protein, putative DNA replication
           initiation-like ATPase [Herminiimonas arsenicoxydans]
          Length = 227

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 8/225 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----PSRVVILVGPSGSGKSCL 80
            QL    P     +    +V  A  + + L+             R V L G +G+GK+ L
Sbjct: 2   RQLLLDLPAEKPQTLTSFVVG-ANAELIHLLQRLAQGQPGGLDERFVYLWGGAGAGKTHL 60

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSS 139
               +    +      A +            LL+D   L        F + N + +    
Sbjct: 61  LRALASADTTLYIPGDAGADAFAYQPATTLYLLDDSHKLSPEAQIAAFALFNQVREQGGC 120

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LL      P +  V   DL +R     + ++    D+     +      R + +   +  
Sbjct: 121 LLAAGNAAPATLTVR-EDLRTRFGWGLIYQVHGLSDEEKIAALTHAAEARGLMLSPGVLP 179

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           Y++    R +     ++D +D  +L     IT  L  E+L+   +
Sbjct: 180 YLLSHFARDMRSLSAMLDALDEYSLETKRPITLPLLRELLQRENE 224


>gi|170718408|ref|YP_001783630.1| DNA replication initiation factor [Haemophilus somnus 2336]
 gi|168826537|gb|ACA31908.1| Chromosomal replication initiator DnaA [Haemophilus somnus 2336]
          Length = 231

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114
                + G   +GK+ L    S+   +++ + I   L             ++ ++ V L+
Sbjct: 41  QPFFYIFGGKSTGKTHLLKACSNYFLASQRNAIYIPLSKAQYFSPEVLENLEQQELVCLD 100

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           D   +  N   +  +F ++N I +  S+LL+ +A   PV+  + LPDL SRL    + ++
Sbjct: 101 DFHAIIGNHEWELAIFDLMNRIKESGSTLLLISANQSPVNLNISLPDLASRLSWGEIYQL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +  ++    +VI +    R I +    A ++++R++R +      +  +D  +L     +
Sbjct: 161 NPLNEQQKVEVIKRNAHQRGIELPDDTANFLLKRLDRDIKSLFDTLTLLDKASLQAQRKL 220

Query: 231 TRSLAAEVLK 240
           T     E+L 
Sbjct: 221 TIPFVKEILN 230


>gi|319786687|ref|YP_004146162.1| DnaA regulatory inactivator Hda [Pseudoxanthomonas suwonensis 11-1]
 gi|317465199|gb|ADV26931.1| DnaA regulatory inactivator Hda [Pseudoxanthomonas suwonensis 11-1]
          Length = 237

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 14/226 (6%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLANIWS 85
           QL  +         +  +     E A+  +      P    + L GP+GSGK+ L     
Sbjct: 12  QLPLALRYPPEQRLESYIGAP--EGALGQLRGLALNPGVDWIYLEGPAGSGKTHLGLGVC 69

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDIDLLDFN---DTQLFHIINSIH 134
            ++           L +     R+         V L+ ++ +  +   +  LF   N + 
Sbjct: 70  AEADGAGRRAAYLPLRAARGRLREALEAQEADVVALDGLEAIAGDRDDEVALFDFHNRMR 129

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
              +S+L  A   P +  + LPDL SRL   T + +   DD+    V+      R + ++
Sbjct: 130 AAGASVLYLATAAPQALPLVLPDLRSRLGQCTRIALHPLDDEGRRAVLRDRARRRGLVLE 189

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +    +++ R  R +     L++++D  +L+    +T      +L 
Sbjct: 190 EAAIDWLLTRTGRDMGRLLGLLERIDRASLAAQRRVTVPFLRGLLD 235


>gi|92114232|ref|YP_574160.1| regulatory inactivation of DnaA Hda protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91797322|gb|ABE59461.1| regulatory inactivation of DnaA Hda protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 232

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 12/188 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114
              + L G  GSG+S L      ++       +   L  +          ++    V ++
Sbjct: 43  EPFLFLWGALGSGRSHLLQAACHEAGDRGDRALYLPLHDLGHFPPHMLEDLERLDLVAID 102

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           D+  +      +  LFH  N +   D  L++ A   P      LPDL SRL       ++
Sbjct: 103 DLSAVLGRKRWEEGLFHFFNRMRDADKRLVIAADAAPRQLSTVLPDLASRLTWGVTFHVA 162

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
             DD    + +      R + +  ++A YI+ R  R L      + ++D  +LS    +T
Sbjct: 163 PLDDAGRFEALQLRARVRGMQLPDEVARYILHRGPRQLPALFDALARLDRASLSAQRKLT 222

Query: 232 RSLAAEVL 239
                + L
Sbjct: 223 IPFVKQAL 230


>gi|308048975|ref|YP_003912541.1| regulatory inactivation of DnaA Hda protein [Ferrimonas balearica
           DSM 9799]
 gi|307631165|gb|ADN75467.1| regulatory inactivation of DnaA Hda protein [Ferrimonas balearica
           DSM 9799]
          Length = 235

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 89/234 (38%), Gaps = 19/234 (8%)

Query: 23  NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSC 79
               QL      P             +  +Q +  +    +     V  L G   SG++ 
Sbjct: 4   RAPTQLSLPVHLPDDETFRS---YYPAGNQQLIDSLRQAAAGEGETVTYLWGSGKSGRTH 60

Query: 80  LANIWS------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLD---FNDTQLF 127
           L +          +S       I  S+   ++D  +    V L+DID +      +  LF
Sbjct: 61  LLHATCVYASELGRSTFYLPLGIHASMSPAILDGLEDLSLVCLDDIDEVCRHPIWEEALF 120

Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           ++ N + +     L+++AR      G  LPDL SRL      ++    DD     + +  
Sbjct: 121 NLYNRVREKGTCRLVVSARAPANQAGFLLPDLVSRLNWGIHYQLHPLSDDAKLAALQRRA 180

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             R + +++++  +++ R+ R L    +++D++D  ++     +T     E L 
Sbjct: 181 KMRGLDLEEEVGRFLMTRLARDLRTLFEVLDRLDKASMVAQRRLTIPFVKETLH 234


>gi|269468308|gb|EEZ79987.1| DnaA family protein [uncultured SUP05 cluster bacterium]
          Length = 224

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 13/223 (5%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLID--SWPSWPSRVVILVGPSGSGKSCLAN-- 82
           QL   F     +  D+  V    +Q +  I   S    PS VV + G   SG++ L    
Sbjct: 3   QLGLPFSLDSKMLLDNF-VGKKNQQILDFISQLSTQKAPS-VVYVYGGKSSGRTHLLQGC 60

Query: 83  IWSDKSR--STRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQ-LFHIINSIHQY 136
            ++         + +  + L   ++D  +    V L++++ L+ N  Q LF + N   Q 
Sbjct: 61  AFAALKEKLEVTYIDFNQDLPDGVMDNLESLDWVCLDNVNCLNENQQQELFDLYNRSVQT 120

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L+M+    P    + L DL +RL  AT+  +   DDD  ++VI     +R I I+ K
Sbjct: 121 QVKLIMSGDDLPTELNL-LKDLKTRLSLATIFHLESLDDDSKKEVIQSKMKNRNIAIENK 179

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +  Y+ +   R+L    K +D +D  +L +   IT  L  +VL
Sbjct: 180 VYDYLFKYYSRNLTDLLKAIDCLDEASLQQKNNITIPLIKQVL 222


>gi|307728542|ref|YP_003905766.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1003]
 gi|307583077|gb|ADN56475.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1003]
          Length = 247

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 9/228 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G +GSG++ L
Sbjct: 3   RQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDSALAAGPLADRTFYVWGEAGSGRTHL 62

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                 ++     RF+    SL +   D R  +  ++D D L       +F++ N +  +
Sbjct: 63  LQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRAH 122

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            +S L+     P        DL +RL    V  ++   D+    V+ +   +R I +   
Sbjct: 123 PTSALVATGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEAKAAVLKRAARERGIMLADD 182

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + AY++    R +     L+D +D  +L +   +T  L   +L    Q
Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPAQ 230


>gi|289207741|ref|YP_003459807.1| DnaA regulatory inactivator Hda [Thioalkalivibrio sp. K90mix]
 gi|288943372|gb|ADC71071.1| DnaA regulatory inactivator Hda [Thioalkalivibrio sp. K90mix]
          Length = 243

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 17/234 (7%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLA 81
           E QL                       A   + +           ++L GPSGSGK+ L 
Sbjct: 10  ERQLPLDLRLRDASRFSGFY-ARGNALARDAVQALSVGTGIQEPQILLHGPSGSGKTHLL 68

Query: 82  NIWSDKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                +            L  +           ++    V L+D++ +      D  LF 
Sbjct: 69  QAACYQGHERGDPVSYLPLGEVAEAPPMAVLDGLERSCLVALDDLEAVVGRGDWDEALFG 128

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           ++N +      +L+ A   P    V LPDL SRL    V ++  PDD   ++++ +  A 
Sbjct: 129 LVNRLRDAGCRVLLAAAAPPEGLPVRLPDLASRLAWGPVFRMQRPDDVACKEILAQRAAL 188

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           R + + + +A Y+++R  R L     L+D++D  AL++   +T     E L   
Sbjct: 189 RGLELPEPVADYLLRRCSRDLSTLLALLDRLDLAALAQQRRLTIPFVREQLARM 242


>gi|260598871|ref|YP_003211442.1| DNA replication initiation factor [Cronobacter turicensis z3032]
 gi|260218048|emb|CBA32767.1| DnaA-homolog protein hda [Cronobacter turicensis z3032]
          Length = 233

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 89/233 (38%), Gaps = 19/233 (8%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSC 79
           N   QL          +          ++  A++ ++       S  +      G G+S 
Sbjct: 2   NTPAQLSLPLWLPDDETFASFWPGDNPSLLAALQTMLRHDR---SGYIYFWSREGGGRSH 58

Query: 80  LANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLF 127
           L +        +  +  +  + K    +      ++    V +++I+ +  ++     +F
Sbjct: 59  LLHAACAELSQRGDAVGYVPLDKRTWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIF 118

Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           ++ N I +   + LL+T    P    + LPDL SRL    + ++    DD   + +    
Sbjct: 119 NLYNRILESGNTRLLITGDRPPRQLNLKLPDLASRLDWGQIYRLQPLSDDDKLQALQLRA 178

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             R   + + +  ++++R++R +      +D++D  ++S    +T     + L
Sbjct: 179 RMRGFELPEDVGRFLLKRLDREMRTLFLTLDQLDRASISAQRKLTIPFVKDTL 231


>gi|194364750|ref|YP_002027360.1| hypothetical protein Smal_0972 [Stenotrophomonas maltophilia
           R551-3]
 gi|194347554|gb|ACF50677.1| DnaA regulatory inactivator Hda [Stenotrophomonas maltophilia
           R551-3]
          Length = 235

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 89/230 (38%), Gaps = 19/230 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS--AIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANI 83
           QL  +         +  +     A+ Q   + + +   W    V L G +G+GK+  A  
Sbjct: 5   QLPLALHYPRDQRLETFIGAPDGALAQLRAIAVGASHDW----VYLEGAAGTGKTHQALA 60

Query: 84  WSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
               +           L S           ++ R+ V L+ +D +     ++  LF   N
Sbjct: 61  MCSSAEQAGRLPTYVPLASAAGRVRAALDGLEARELVALDGLDEIAGNREDEIALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  ++L TA+  P   G+ LPDL SRL     V +   D++    V+ +    R +
Sbjct: 121 RARAAGVTVLYTAQKAPGELGLVLPDLRSRLGQCVRVLLQPLDEEGRAAVLRERALRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ID+    +++    R L     L+D +D  +L+    IT     +VL+E
Sbjct: 181 AIDEASIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITVPFLRQVLEE 230


>gi|254180769|ref|ZP_04887367.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 1655]
 gi|184211308|gb|EDU08351.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 1655]
          Length = 332

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S L
Sbjct: 96  RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 155

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +     R+ +    LD++  D R  +  ++D D L D     LF++ N +  +
Sbjct: 156 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 215

Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             ++L++     P++  V   DL +RL    V  ++   D+    V+     +R I +  
Sbjct: 216 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 274

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 275 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 325


>gi|254178931|ref|ZP_04885585.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           ATCC 10399]
 gi|254202586|ref|ZP_04908949.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           FMH]
 gi|254207924|ref|ZP_04914274.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           JHU]
 gi|147746833|gb|EDK53910.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           FMH]
 gi|147751818|gb|EDK58885.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           JHU]
 gi|160694845|gb|EDP84853.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           ATCC 10399]
          Length = 332

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S L
Sbjct: 96  RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 155

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +     R+ +    LD++  D R  +  ++D D L D     LF++ N +  +
Sbjct: 156 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 215

Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             ++L++     P++  V   DL +RL    V  ++   D+    V+     +R I +  
Sbjct: 216 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 274

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 275 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 325


>gi|330999360|ref|ZP_08323077.1| DnaA regulatory inactivator Hda [Parasutterella excrementihominis
           YIT 11859]
 gi|329575218|gb|EGG56769.1| DnaA regulatory inactivator Hda [Parasutterella excrementihominis
           YIT 11859]
          Length = 236

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 16/222 (7%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIWS 85
           QL   F      +  + +V  +  +AV +I             L G  G GK+ L     
Sbjct: 20  QLPLDFFPEKQPTLSNFIVG-SNSEAVAVISELKEGRGPQFTYLWGYEGVGKTHLVRALG 78

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFNDTQLFHIINSIHQY-DSSLLMT 143
            +S                 + R    ++++ DL      +LF + N++ ++  + L++T
Sbjct: 79  KQSEGV----------PAFDENRTIYAVDNVQDLTPEQQQELFVLYNTVREHPGTHLVVT 128

Query: 144 ARTFPVSWGVC--LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           A   P  +       DL SR     V ++S   D+   +VI++  +   + +  ++  +I
Sbjct: 129 ADRSPKDFERQGFRKDLTSRFSWGVVFELSPLSDEQKRQVILEAASQTGLKVAPEVLNWI 188

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                R +     L+  +D  A+S    +T  L  E  +  Q
Sbjct: 189 ENNFPRDMHTMSNLLHSLDRYAMSAKRAVTIPLIKEWFERNQ 230


>gi|304398365|ref|ZP_07380239.1| DnaA regulatory inactivator Hda [Pantoea sp. aB]
 gi|304354231|gb|EFM18604.1| DnaA regulatory inactivator Hda [Pantoea sp. aB]
          Length = 270

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++   +        +      G G+S L
Sbjct: 39  NTPAQLSLPLYLPDDETFSSFWPGENPSLIAALKGALNQQH--GSYLYFWSREGGGRSHL 96

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
            +    +  +   +     LD            ++    V +++I+ +      +  +F 
Sbjct: 97  LHAACAEMSARSEAVGYVPLDKRTWFVPDVLEGMEQLSLVCIDNIECIAGEPEWEMAIFD 156

Query: 129 IINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +   + L +T    P    + LPDL SRL    + ++    D+   + +     
Sbjct: 157 LYNRILETGNTRLFITGDRPPRQLNLQLPDLASRLDWGQIYRLQPLSDEDKLQALQLRAG 216

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  ++S    +T     E L
Sbjct: 217 LRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDRASISAQRKLTIPFVKETL 268


>gi|270264635|ref|ZP_06192900.1| DnaA family protein Hda [Serratia odorifera 4Rx13]
 gi|270041318|gb|EFA14417.1| DnaA family protein Hda [Serratia odorifera 4Rx13]
          Length = 203

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
              +      G G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 13  GSYIYFWSREGGGRSHLLHAACAELSQRGEAVGYVPLDKRAYFVPEVLDGMEQLALVCID 72

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F++ N I +     L +T    P    + LPDL SRL    + K+
Sbjct: 73  NIECIAGDEEWEMAIFNLYNRILETGRTRLFITGDRPPRQLNLHLPDLASRLDWGQIYKL 132

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D  +++    +
Sbjct: 133 QPLSDEEKLQALQLRGKLRGFELPEDVGRFLLKRLDREMRTLFTTLDQLDRASITAQRKL 192

Query: 231 TRSLAAEVL 239
           T     E+L
Sbjct: 193 TIPFVKEIL 201


>gi|76811961|ref|YP_334683.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 1710b]
 gi|76581414|gb|ABA50889.1| conserved hypothetical protein [Burkholderia pseudomallei 1710b]
          Length = 332

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S L
Sbjct: 96  RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 155

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +     R+ +    LD++  D R  +  ++D D L D     LF++ N +  +
Sbjct: 156 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 215

Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             ++L++     P++  V   DL +RL    V  ++   D+    V+     +R I +  
Sbjct: 216 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 274

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 275 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 325


>gi|254522116|ref|ZP_05134171.1| DnaA regulatory inactivator Hda [Stenotrophomonas sp. SKA14]
 gi|219719707|gb|EED38232.1| DnaA regulatory inactivator Hda [Stenotrophomonas sp. SKA14]
          Length = 235

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 19/230 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS--AIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANI 83
           QL  +         +  +     A+ Q   + + +   W    V L G +G+GK+  A  
Sbjct: 5   QLPLALHYPRDQRLETFIGAPDGALAQLRAIAVGASHDW----VYLEGAAGTGKTHQALA 60

Query: 84  WSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
               +           L S           +++R+ V L+ +D +     ++  LF   N
Sbjct: 61  MCSSAEQAGRLPTYVPLASAAGRVRAALDGLESRELVALDGLDEVAGSREDEIALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  ++L TA+  P   G+ LPDL SRL     V +   D++    V+ +    R +
Sbjct: 121 RARAAGVTVLYTAQKAPGELGLLLPDLRSRLGQCVRVLLQPLDEEGRAAVLRERALRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ID+    +++    R L     L+D +D  +L+    IT     +VL+E
Sbjct: 181 AIDEAAIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITVPFLRQVLEE 230


>gi|171057364|ref|YP_001789713.1| DnaA regulatory inactivator Hda [Leptothrix cholodnii SP-6]
 gi|170774809|gb|ACB32948.1| DnaA regulatory inactivator Hda [Leptothrix cholodnii SP-6]
          Length = 225

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 12/226 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            Q+  +         D  L   A  Q       +      P+  + L GP GSGK+ L  
Sbjct: 2   RQVPLALGPEPNWRLDTFLPG-ANAQWQQVCAALAQPQ--PATPLYLWGPPGSGKTHLLR 58

Query: 83  IW----SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYD 137
                  ++S+     + +        D    +LL+D D  D       F +        
Sbjct: 59  AAAALAQERSQLVVALDCSGVPPWEFDDHTGLLLLDDCDRYDTRRQQAAFALFVQATTLG 118

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             +L   R  PV   +   DL +RL    V ++  P +D +  ++ +    R I +   +
Sbjct: 119 VPVLAAGRLPPVDLPIR-DDLRTRLGWGLVYQLVPPGEDHVRALMRREADRRGIVLSDDV 177

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             Y+++R  R L    +L+D++D  AL+    +T  L  +VL E++
Sbjct: 178 IDYLLKRCARDLSHLMRLLDRLDQQALATKRAVTLPLVRKVLAESE 223


>gi|71898099|ref|ZP_00680285.1| ATPas [Xylella fastidiosa Ann-1]
 gi|71732073|gb|EAO34129.1| ATPas [Xylella fastidiosa Ann-1]
          Length = 233

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 88/232 (37%), Gaps = 23/232 (9%)

Query: 27  QLFFSFPRCLGISRDDLLVHSA-----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           QL  +         +  L   +     +   V        W    + LVG SGSGK+ LA
Sbjct: 5   QLPLALRYSSDQRFETYLHAPSGLIAQLRAVVDQCSR--DW----IYLVGASGSGKTHLA 58

Query: 82  NIWS------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF------NDTQLFHI 129
                      +S +     +A       ++  +  +L  +D L        ++  LF  
Sbjct: 59  LALCAAAEQVGQSVAYLPLQVAVGRLRDALEALEGCVLVVLDGLQAIVGMREDEIALFDF 118

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N       +LL TAR  P   G+ LPDL SR+     + +   DD     V+ +    R
Sbjct: 119 HNRARAAGITLLYTARAIPDGLGLTLPDLRSRVAQCIRIALPTLDDVGRASVLRERAQRR 178

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            + +D+    +++ R +R L     L++++D  +L+    +T      VL E
Sbjct: 179 GLMLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVLAE 230


>gi|94498878|ref|ZP_01305416.1| hypothetical protein RED65_08829 [Oceanobacter sp. RED65]
 gi|94428510|gb|EAT13482.1| hypothetical protein RED65_08829 [Oceanobacter sp. RED65]
          Length = 232

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 93/230 (40%), Gaps = 20/230 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSA----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           EQL          + ++     +    ++  +  I        + + + G SG G S L 
Sbjct: 5   EQLPLGVQLRDEATFENFYALQSQEVKLQAQLAAIGK----GEQSIFIYGESGCGTSHLL 60

Query: 82  NIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDF---NDTQLFHI 129
                ++++   +++   L+ ++         ++    + L+++  +      +  +FH+
Sbjct: 61  QAACHEAQTHDLNSVYLPLEELVEYSPAVFESLENLPLIALDNMQAIAGLPAWEEAVFHL 120

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +      ++M A       G+ L DL SRL    V ++    ++     +     +R
Sbjct: 121 FNRVRDNGGHIIMAANDSIEGLGIKLADLKSRLHWGLVYELPELTEEDKMAALKLRAHNR 180

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            + +   +A Y+V++ME  +    + ++++D  +LS    +TR    +V+
Sbjct: 181 GLELGDDVAKYVVRQMEGHMDKMFEALNQLDKASLSAKRKVTRPFVKDVM 230


>gi|261491981|ref|ZP_05988557.1| DNA replication initiation protein A [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261495291|ref|ZP_05991743.1| DNA replication initiation protein A [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309056|gb|EEY10307.1| DNA replication initiation protein A [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312352|gb|EEY13479.1| DNA replication initiation protein A [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 236

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 92/234 (39%), Gaps = 20/234 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL     +    + D+    ++      L  ++         + G    GKS L    S
Sbjct: 1   MQLPLPIHQIDEDTFDNFYSQNSEVLLESLKRNFTDVQQPFFYIWGGKSCGKSHLLKAVS 60

Query: 86  D------KSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFN---DTQLFHIINSI 133
           +      ++ S      A     +++D  +    + L+DI  +  +   +  +F++ N I
Sbjct: 61  NHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQAIAGDAEWELAIFNLFNQI 120

Query: 134 HQYDSS--------LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            +            LL++A   P    + LPDL SRL    V +++   D+   +++   
Sbjct: 121 REQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWGEVYQLNDLTDEQKCQILQLN 180

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + +  ++A +++++    L    K++DK+D  +L     +T     E+L
Sbjct: 181 AHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKASLQAQRKLTIPFVKEIL 234


>gi|307130014|ref|YP_003882030.1| ATPase regulatory factor involved in DnaA inactivation [Dickeya
           dadantii 3937]
 gi|306527543|gb|ADM97473.1| ATPase regulatory factor involved in DnaA inactivation [Dickeya
           dadantii 3937]
          Length = 233

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 84/230 (36%), Gaps = 13/230 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               +  +        +      G G+S L +
Sbjct: 2   NTPAQLSLPLYLPDDETFASFYPGENTSLLAAIHTTLNQEHGSYIYFWSREGGGRSHLLH 61

Query: 83  IWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
               +      +  +  + K    +      ++    V +++I+ +  ++     LF++ 
Sbjct: 62  AACAELSRLGSAVGYVPLDKRAYFVPEVLEGMEQLALVCIDNIESISGDEAWEMALFNLY 121

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + L DL SRL    + ++    D+   + +      R
Sbjct: 122 NRIQEGGRTRLLITGDRPPRQINLQLADLASRLDWGQIYRLQPLSDEEKGEALQLRARLR 181

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + ++ ++++R++R +      +D++D+ +++    +T     E+L
Sbjct: 182 GFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 231


>gi|209520580|ref|ZP_03269335.1| DnaA regulatory inactivator Hda [Burkholderia sp. H160]
 gi|209498973|gb|EDZ99073.1| DnaA regulatory inactivator Hda [Burkholderia sp. H160]
          Length = 250

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 9/229 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G +GSG++ L
Sbjct: 3   RQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDNALAAGPVADRTFYVWGEAGSGRTHL 62

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                 ++     RF+    SL +   D R  +  ++D D L       +F++ N +  +
Sbjct: 63  LQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRAH 122

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            +S L+ A            DL +RL    V  ++   DD    V+ +   +R I +   
Sbjct: 123 PTSALVAAGNAAPIGMTVREDLRTRLGWGLVFHLAPLPDDAKAAVLKRAARERGIMLADD 182

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + AY++    R +     L+D +D  +L +   +T  L   +L      
Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDPA 231


>gi|300723565|ref|YP_003712870.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630087|emb|CBJ90724.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus
           nematophila ATCC 19061]
          Length = 221

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 77/190 (40%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
              +      G GKS L +        +  +  +  + K    +      ++    V ++
Sbjct: 31  GSYIYFWSRDGGGKSHLLHAACTELSQQEEAVGYVPLDKRAYFVPEVLDGMEHLSLVCID 90

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  +      +F++ N I +   + LL+T    P    + LPDL SRL    + K+
Sbjct: 91  NIECIAGDQEWEMAIFNLYNRIVEIGRTCLLITGDRPPRQINLTLPDLASRLDWGQIYKL 150

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               DD     +      R   + + +  ++++R++R +    K +D++D  ++     +
Sbjct: 151 QPLSDDEKILALQLRAKLRGFELPEDVGRFVLKRLDREMQTLFKTLDELDRASIVAQRKL 210

Query: 231 TRSLAAEVLK 240
           T     ++L+
Sbjct: 211 TIPFVKDILE 220


>gi|317049103|ref|YP_004116751.1| DnaA regulatory inactivator Hda [Pantoea sp. At-9b]
 gi|316950720|gb|ADU70195.1| DnaA regulatory inactivator Hda [Pantoea sp. At-9b]
          Length = 235

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 21/234 (8%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAV--RLIDSWPSWPSRVVILVGPSGSGKS 78
           N   QL          +          ++  A+   L+          +      G G+S
Sbjct: 4   NTPAQLSLPLYLPDDETFASFWPGENPSLLAALQGALVQQ----HGSYLYFWSREGGGRS 59

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQL 126
            L +    +  +   +     LD            ++    V +++I+ +      +  +
Sbjct: 60  HLLHAACAEMSARGEAVGYVPLDKRTWFVPEVLEGMEHLALVCIDNIECIAGEAEWEMAI 119

Query: 127 FHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           F + N I +     LL+T    P    + LPDL SRL    + ++    DD   + +   
Sbjct: 120 FDLYNRILEIGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYRLQPLSDDDKLQAMQLR 179

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              R   + + +  ++++R++R +      +D++D  ++S    +T     E L
Sbjct: 180 AGIRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDRASISAQRKLTIPFVKEAL 233


>gi|308187741|ref|YP_003931872.1| Chromosomal replication initiator protein dnaA [Pantoea vagans
           C9-1]
 gi|308058251|gb|ADO10423.1| Chromosomal replication initiator protein dnaA [Pantoea vagans
           C9-1]
          Length = 249

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++   +        +      G G+S L
Sbjct: 18  NTPAQLSLPLYLPDDETFSSFWPGENPSLIAALKGALNQQH--GSYLYFWSREGGGRSHL 75

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
            +    +  +   +     LD            ++    V +++I+ +      +  +F 
Sbjct: 76  LHAACAEMSARSEAVGYVPLDKRTWFVPEVLEGMEQLSLVCIDNIECIAGEPEWEMAIFD 135

Query: 129 IINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +   + L +T    P    + LPDL SRL    + ++    D+   + +     
Sbjct: 136 LYNRILETGNTRLFITGDRPPRQLNLQLPDLASRLDWGQIYRLQPLSDEDKLQALQLRAG 195

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  ++S    +T     E L
Sbjct: 196 LRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDRASISAQRKLTIPFVKETL 247


>gi|190573155|ref|YP_001971000.1| hypothetical protein Smlt1129 [Stenotrophomonas maltophilia K279a]
 gi|190011077|emb|CAQ44686.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 236

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 19/230 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHS--AIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANI 83
           QL  +         +  +     A+ Q   + + +   W    V L G +G+GK+  A  
Sbjct: 6   QLPLALHYPRDQRLETFIGAPDGALAQLRAIAVGASHDW----VYLEGAAGTGKTHQALA 61

Query: 84  WSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
               +           L S           ++ R+ V L+ +D +     ++  LF   N
Sbjct: 62  MCSSAEQAGRLPTYVPLASAAGRVRAALDGLEARELVALDGLDEVAGNRDDEIALFDFHN 121

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  ++L TA+  P + G+ LPDL SRL     V +   D++    V+ +    R +
Sbjct: 122 RARAAGVTVLYTAQKAPEALGLVLPDLRSRLGQCVRVLLQPLDEEGRAAVLRERALRRGL 181

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ID+    +++    R L     L+D +D  +L+    IT     +VL+E
Sbjct: 182 AIDEASIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITVPFLRQVLEE 231


>gi|293394971|ref|ZP_06639259.1| DnaA regulatory inactivator Hda [Serratia odorifera DSM 4582]
 gi|291422499|gb|EFE95740.1| DnaA regulatory inactivator Hda [Serratia odorifera DSM 4582]
          Length = 238

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 84/232 (36%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++   +        +      G G+S L
Sbjct: 7   NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQ--SAVVQEHGSYIYFWSREGGGRSHL 64

Query: 81  ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +        +  +  +  + K    +      ++    V +++I+ +  ++     +F+
Sbjct: 65  LHAACAELSQRGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEAWEMAIFN 124

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     L +T    P    + LPDL SRL    + K+    D      +     
Sbjct: 125 LYNRILETGRTRLFITGDRPPRQLNLQLPDLASRLDWGQIYKLQPLSDTEKLLALQLRAK 184

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D  +++    +T     E+L
Sbjct: 185 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 236


>gi|28199440|ref|NP_779754.1| hypothetical protein PD1561 [Xylella fastidiosa Temecula1]
 gi|182682168|ref|YP_001830328.1| hypothetical protein XfasM23_1647 [Xylella fastidiosa M23]
 gi|28057555|gb|AAO29403.1| replication related protein [Xylella fastidiosa Temecula1]
 gi|182632278|gb|ACB93054.1| DnaA regulatory inactivator Hda [Xylella fastidiosa M23]
 gi|307578437|gb|ADN62406.1| hypothetical protein XFLM_02025 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 233

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 90/230 (39%), Gaps = 19/230 (8%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQA--VRLIDS-WPSWPSRVVILVGPSGSGKSCLANI 83
           QL  +         +  L   +   A    L+D     W    + LVG SGSGK+ LA  
Sbjct: 5   QLPLALRYSSDQRFETYLHAPSGLIAQLRALVDQCSREW----IYLVGASGSGKTHLALA 60

Query: 84  WS------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF------NDTQLFHIIN 131
                    +S +     +A       ++  +  +L  +D L        ++  LF   N
Sbjct: 61  LCAAAEQVGQSVAYLPLQVAVGRLRDALEALEGCVLVVLDGLQAIVGMREDEIALFDFHN 120

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                  +LL TAR  P   G+ LPDL SR+     + +   DD     V+ +    R +
Sbjct: 121 RARAAGITLLYTARAIPDGLGLTLPDLRSRVAQCIRIALPTLDDVGRASVLRERAQRRGL 180

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +D+    +++ R +R L     L++++D  +L+    +T      VL E
Sbjct: 181 MLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVLAE 230


>gi|290475625|ref|YP_003468514.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus
           bovienii SS-2004]
 gi|289174947|emb|CBJ81748.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus
           bovienii SS-2004]
          Length = 221

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 77/190 (40%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
              +      G GKS L +        +  +  +  + K    +      ++    V ++
Sbjct: 31  GSYIYFWSRDGGGKSHLLHASCAELSQQGEAVGYVPLDKRAYFVPEVLDGMEHLSLVCID 90

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  +      +F++ N I +   + LL+T    P    + LPDL SRL    + K+
Sbjct: 91  NIECIAGDQEWEMAIFNLYNRIVEIGRTCLLITGDRPPRQINLTLPDLASRLDWGQIYKL 150

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               DD   + +      R   + + +  ++++R++R +    + +D++D  ++     +
Sbjct: 151 QPLSDDEKIQALQLRAKLRGFELPEDVGRFVLKRLDREMQTLFRTLDELDRASIVAQRKL 210

Query: 231 TRSLAAEVLK 240
           T     ++L 
Sbjct: 211 TIPFVKDILD 220


>gi|15837192|ref|NP_297880.1| hypothetical protein XF0590 [Xylella fastidiosa 9a5c]
 gi|71274560|ref|ZP_00650848.1| ATPas [Xylella fastidiosa Dixon]
 gi|71901344|ref|ZP_00683439.1| ATPas [Xylella fastidiosa Ann-1]
 gi|170730815|ref|YP_001776248.1| hypothetical protein Xfasm12_1717 [Xylella fastidiosa M12]
 gi|9105454|gb|AAF83400.1|AE003904_21 conserved hypothetical protein [Xylella fastidiosa 9a5c]
 gi|71164292|gb|EAO14006.1| ATPas [Xylella fastidiosa Dixon]
 gi|71728888|gb|EAO31024.1| ATPas [Xylella fastidiosa Ann-1]
 gi|167965608|gb|ACA12618.1| chromosomal replication initiator protein DnaA [Xylella fastidiosa
           M12]
          Length = 233

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 88/232 (37%), Gaps = 23/232 (9%)

Query: 27  QLFFSFPRCLGISRDDLLVHSA-----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           QL  +         +  L   +     +   V        W    + LVG SGSGK+ LA
Sbjct: 5   QLPLALRYSSDQRFETYLHAPSGLIAQLRAVVDQCSR--DW----IYLVGASGSGKTHLA 58

Query: 82  NIWS------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF------NDTQLFHI 129
                      +S +     +A       ++  +  LL  +D L        ++  LF  
Sbjct: 59  LALCAAAEQVGQSVAYLPLQVAVGRLRDALEALEGCLLVVLDGLQAIVGMREDEIALFDF 118

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N       +LL TAR  P   G+ LPDL SR+     + +   DD     V+ +    R
Sbjct: 119 HNRARAAGITLLYTARAIPDGLGLTLPDLRSRVAQCIRIALPTLDDVGRASVLRERAQRR 178

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            + +D+    +++ R +R L     L++++D  +L+    +T      VL E
Sbjct: 179 GLMLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVLAE 230


>gi|167817251|ref|ZP_02448931.1| hypothetical protein Bpse9_19079 [Burkholderia pseudomallei 91]
          Length = 251

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S L
Sbjct: 15  RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 74

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +     R+ +    LD++  D R  +  ++D D L D     LF++ N +  +
Sbjct: 75  LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 134

Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             ++L++     P++  V   DL +RL    V  ++   D+    V+     +R I +  
Sbjct: 135 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 193

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 194 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 244


>gi|126667545|ref|ZP_01738515.1| DNA replication initiation factor [Marinobacter sp. ELB17]
 gi|126627971|gb|EAZ98598.1| DNA replication initiation factor [Marinobacter sp. ELB17]
          Length = 238

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 23/232 (9%)

Query: 27  QLFFSFPRCLGISRDDL------LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           QL            D+        V   ++QA +   +       VV+L G S +GKS L
Sbjct: 11  QLILGVKLRDDARFDNFHGERNAAVAERLQQACQPPVT-----VPVVVLCGDSDTGKSHL 65

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
                  + S   S +  S+  +          ++    V L+D+D +      +  +FH
Sbjct: 66  LQALCHYAESQSLSAVCISITELGPFGPDALTGLEQFNLVCLDDLDSVVGQTGWEEAVFH 125

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N +      L+++    P S    LPDL SRL     +++ +  D   +++++     
Sbjct: 126 LYNRMLDAGHQLVVSLSDVPASLPFILPDLSSRLSHGLTLQLGIYRDSDRKRILMARVEQ 185

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R + +   +A +I++R  R L     ++D +D  +L     +T      V+ 
Sbjct: 186 RGLVMADDVAGFILRRAPRRLGELLAILDSLDENSLQAQRRLTIPFVKTVMN 237


>gi|251790569|ref|YP_003005290.1| DNA replication initiation factor [Dickeya zeae Ech1591]
 gi|247539190|gb|ACT07811.1| DnaA regulatory inactivator Hda [Dickeya zeae Ech1591]
          Length = 235

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 84/230 (36%), Gaps = 13/230 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               +  +        +      G G+S L +
Sbjct: 4   NTPAQLSLPLYLPDDETFASFYPGENTSLLAAIHTTLDQEHGSYIYFWSREGGGRSHLLH 63

Query: 83  IWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
               +     R+  +  + K    +      ++    V +++I+ +  ++     LF++ 
Sbjct: 64  AACAELSRLGRAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEVWEMALFNLY 123

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + L DL SRL    + ++    D    + +      R
Sbjct: 124 NRIQEGGRTRLLITGDRPPRQINLQLADLASRLDWGQIYRLQPLSDQEKGEALQLRARLR 183

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + ++ ++++R++R +      +D++D+ +++    +T     E+L
Sbjct: 184 GFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 233


>gi|262277378|ref|ZP_06055171.1| probable ATPase involved in DNA replication initiation [alpha
           proteobacterium HIMB114]
 gi|262224481|gb|EEY74940.1| probable ATPase involved in DNA replication initiation [alpha
           proteobacterium HIMB114]
          Length = 218

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 107/204 (52%), Gaps = 6/204 (2%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           ++L+  ++    +  +D +P+W ++++ +VG   SGKS +  ++  K++    SN     
Sbjct: 18  ENLIRDTSNSNVLNFLDKFPNWDTKLINIVGEKKSGKSFILQLFRKKNQFNYISN----K 73

Query: 101 DSILIDTRKPVLLEDI--DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           +       +  L++ +  D    N+ + F +IN    +   L++++R       + L DL
Sbjct: 74  EDFERKYDELFLVDKLILDGFQINEDKFFSLINHFILHKKYLIISSREPLTILEIKLLDL 133

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SRLK   +++I  P DD +  +I+K F+D QI I K L  YIV++++RS    EK + K
Sbjct: 134 KSRLKEFLLIEIQNPSDDLIYSLILKYFSDNQIVIKKDLVEYIVKKIDRSYSSIEKFLIK 193

Query: 219 MDNLALSRGMGITRSLAAEVLKET 242
           +++ ++ +   I   L  EVL ET
Sbjct: 194 LNDQSIIKKKKIDYKLINEVLNET 217


>gi|107021836|ref|YP_620163.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia AU 1054]
 gi|116688783|ref|YP_834406.1| hypothetical protein Bcen2424_0760 [Burkholderia cenocepacia
           HI2424]
 gi|105892025|gb|ABF75190.1| Chromosomal replication initiator, DnaA [Burkholderia cenocepacia
           AU 1054]
 gi|116646872|gb|ABK07513.1| Chromosomal replication initiator, DnaA [Burkholderia cenocepacia
           HI2424]
          Length = 261

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 10/227 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78
             QL          + D+ ++    ++ V  +            P R   + G  GSG++
Sbjct: 19  SRQLTLDLGTPPPATFDNFIMSDENDELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 78

Query: 79  CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134
            L       +    +   +  +               ++D D + D     LF++ N + 
Sbjct: 79  HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 138

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
            + SS  + A            DL +RL    V  +S P D     V+     +R I + 
Sbjct: 139 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 198

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 199 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 245


>gi|188533206|ref|YP_001907003.1| DNA replication initiation factor [Erwinia tasmaniensis Et1/99]
 gi|188028248|emb|CAO96106.1| DnaA-homolog protein hda [Erwinia tasmaniensis Et1/99]
          Length = 235

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 13/231 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L  +               G G+S L +
Sbjct: 4   NTPAQLSLPLYLPDDETFASFWPGENTSLLAALQSALHQHHGSYFYFWSREGGGRSHLLH 63

Query: 83  IWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT---QLFHII 130
               +  +   +     LD            ++    V +++I+ +  ++     +F + 
Sbjct: 64  AACAELSAQGDAVGYVPLDKRTWFVPEVLDGMEQLSLVCIDNIECIAGDELWEMAIFDLY 123

Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N I +     LL+T    P    + L DL SRL    + K+    D+   + +      R
Sbjct: 124 NRILETGKTRLLITGDRPPRQLNLKLADLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 183

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++++R++R +      +D++D+ ++S    +T     E L+
Sbjct: 184 GFELPEDVGRFLLKRLDREMRTLFVTLDRLDHASISAQRKLTIPFVKEALE 234


>gi|53720428|ref|YP_109414.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei K96243]
 gi|53725782|ref|YP_103877.1| DnaA regulatory inactivator Hda [Burkholderia mallei ATCC 23344]
 gi|67642143|ref|ZP_00440904.1| DnaA regulatory inactivator Hda [Burkholderia mallei GB8 horse 4]
 gi|121600449|ref|YP_991858.1| DnaA regulatory inactivator Hda [Burkholderia mallei SAVP1]
 gi|124385971|ref|YP_001027075.1| DnaA regulatory inactivator Hda [Burkholderia mallei NCTC 10229]
 gi|126440017|ref|YP_001060280.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 668]
 gi|126450632|ref|YP_001081726.1| DnaA regulatory inactivator Hda [Burkholderia mallei NCTC 10247]
 gi|126454849|ref|YP_001067539.1| hypothetical protein BURPS1106A_3302 [Burkholderia pseudomallei
           1106a]
 gi|166998833|ref|ZP_02264685.1| DnaA regulatory inactivator Hda [Burkholderia mallei PRL-20]
 gi|167721062|ref|ZP_02404298.1| hypothetical protein BpseD_18786 [Burkholderia pseudomallei DM98]
 gi|167740033|ref|ZP_02412807.1| hypothetical protein Bpse14_18373 [Burkholderia pseudomallei 14]
 gi|167817252|ref|ZP_02448932.1| hypothetical protein Bpse9_19084 [Burkholderia pseudomallei 91]
 gi|167825663|ref|ZP_02457134.1| hypothetical protein Bpseu9_18472 [Burkholderia pseudomallei 9]
 gi|167847150|ref|ZP_02472658.1| hypothetical protein BpseB_17887 [Burkholderia pseudomallei B7210]
 gi|167895732|ref|ZP_02483134.1| hypothetical protein Bpse7_18471 [Burkholderia pseudomallei 7894]
 gi|167904124|ref|ZP_02491329.1| hypothetical protein BpseN_17881 [Burkholderia pseudomallei NCTC
           13177]
 gi|167912383|ref|ZP_02499474.1| hypothetical protein Bpse112_17994 [Burkholderia pseudomallei 112]
 gi|167920338|ref|ZP_02507429.1| hypothetical protein BpseBC_17459 [Burkholderia pseudomallei
           BCC215]
 gi|217421013|ref|ZP_03452518.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 576]
 gi|226194260|ref|ZP_03789859.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei Pakistan
           9]
 gi|242314326|ref|ZP_04813342.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 1106b]
 gi|254261539|ref|ZP_04952593.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 1710a]
 gi|52210842|emb|CAH36829.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52429205|gb|AAU49798.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|121229259|gb|ABM51777.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|124293991|gb|ABN03260.1| DnaA regulatory inactivator Hda [Burkholderia mallei NCTC 10229]
 gi|126219510|gb|ABN83016.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 668]
 gi|126228491|gb|ABN92031.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 1106a]
 gi|126243502|gb|ABO06595.1| DnaA regulatory inactivator Hda [Burkholderia mallei NCTC 10247]
 gi|217396425|gb|EEC36442.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 576]
 gi|225933725|gb|EEH29713.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei Pakistan
           9]
 gi|238523235|gb|EEP86675.1| DnaA regulatory inactivator Hda [Burkholderia mallei GB8 horse 4]
 gi|242137565|gb|EES23967.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 1106b]
 gi|243064918|gb|EES47104.1| DnaA regulatory inactivator Hda [Burkholderia mallei PRL-20]
 gi|254220228|gb|EET09612.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 1710a]
          Length = 241

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S L
Sbjct: 5   RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 64

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +     R+ +    LD++  D R  +  ++D D L D     LF++ N +  +
Sbjct: 65  LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 124

Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             ++L++     P++  V   DL +RL    V  ++   D+    V+     +R I +  
Sbjct: 125 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 183

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 184 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 234


>gi|254361165|ref|ZP_04977309.1| DNA replication initiation protein A [Mannheimia haemolytica
           PHL213]
 gi|153092656|gb|EDN73705.1| DNA replication initiation protein A [Mannheimia haemolytica
           PHL213]
          Length = 236

 Score =  151 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 92/234 (39%), Gaps = 20/234 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL     +    + D+    ++      L  ++         + G    GKS L    S
Sbjct: 1   MQLPLPIHQIDEDTFDNFYSQNSEVLLGSLKRNFTDVQQPFFYIWGGKSCGKSHLLKAVS 60

Query: 86  D------KSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFN---DTQLFHIINSI 133
           +      ++ S      A     +++D  +    + L+DI  +  +   +  +F++ N I
Sbjct: 61  NHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQAIAGDAEWELAIFNLFNQI 120

Query: 134 HQYDSS--------LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            +            LL++A   P    + LPDL SRL    V +++   D+   +++   
Sbjct: 121 REQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWGEVYQLNDLTDEQKCQILQLN 180

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + + +  ++A +++++    L    K++DK+D  +L     +T     E+L
Sbjct: 181 AHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKASLQAQRKLTIPFVKEIL 234


>gi|82523748|emb|CAI78748.1| chromosomal replication initiator protein dnaA [uncultured gamma
           proteobacterium]
          Length = 243

 Score =  151 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 88/237 (37%), Gaps = 11/237 (4%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGP 72
                     ++ QL          + D+ L  S  +  V  +          ++ + GP
Sbjct: 5   GPTNRTAGPARQHQLPLEIHLRDDATMDNFLTVSRSQPLVSALQHQMDADGEAIIYVYGP 64

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------IDTRKPVLLEDIDLLDFN--- 122
            G+GKS L        R+         L           ++    V ++D+  +  +   
Sbjct: 65  PGAGKSHLLQASCHAGRAETLYLPLAELRQFPGQEVMQGVERLDRVCIDDVQAVLGDADW 124

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
           +  LF+  N   Q    +++     P +  V L DL SRL    V +++   D+    ++
Sbjct: 125 ELALFNFCNGARQRGCRMVVAGDAAPRALAVNLADLRSRLSWGIVYQLAEGSDEEKVDIL 184

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                 R + + K +A +IV R  R+      ++D++D  +L+R   ++     EV+
Sbjct: 185 RFRATRRGLSLSKSVATFIVSRAPRATEQLLMVLDQLDKHSLARQRALSIPFVKEVM 241


>gi|83718791|ref|YP_441863.1| DnaA regulatory inactivator Hda [Burkholderia thailandensis E264]
 gi|83652616|gb|ABC36679.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 334

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 11/232 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSC 79
             QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S 
Sbjct: 97  SRQLTLDLGTPPPATFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSH 156

Query: 80  LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135
           L       +     R+ +    LD++  D R  +  ++D D L D     LF++ N +  
Sbjct: 157 LLQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRA 216

Query: 136 YD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           +  ++L++     P++  V   DL +RL    V  ++   D+    V+     +R I + 
Sbjct: 217 HPMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALA 275

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 276 DDVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPERDE 327


>gi|167580698|ref|ZP_02373572.1| hypothetical protein BthaT_21263 [Burkholderia thailandensis TXDOH]
 gi|167618803|ref|ZP_02387434.1| hypothetical protein BthaB_21007 [Burkholderia thailandensis Bt4]
 gi|257138032|ref|ZP_05586294.1| DnaA regulatory inactivator Hda [Burkholderia thailandensis E264]
          Length = 241

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 11/232 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSC 79
             QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S 
Sbjct: 4   SRQLTLDLGTPPPATFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSH 63

Query: 80  LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135
           L       +     R+ +    LD++  D R  +  ++D D L D     LF++ N +  
Sbjct: 64  LLQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRA 123

Query: 136 YD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           +  ++L++     P++  V   DL +RL    V  ++   D+    V+     +R I + 
Sbjct: 124 HPMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALA 182

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 183 DDVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPERDE 234


>gi|325266646|ref|ZP_08133323.1| DnaA regulatory inactivator Hda [Kingella denitrificans ATCC 33394]
 gi|324982089|gb|EGC17724.1| DnaA regulatory inactivator Hda [Kingella denitrificans ATCC 33394]
          Length = 252

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F       R D L+ +A      LI        + + L G  GSGKS +   W  
Sbjct: 33  QLSFDFD-ETAYPRFDKLLGNANA---ELIYILQQEHDQFLYLWGEQGSGKSHILQAWVG 88

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDLLDFNDTQ-LFHIINSIHQYDS-SL 140
           ++     S +   +    +         V ++ ++ L+  +   LF I N         L
Sbjct: 89  QAAHAGHSALYIDVGKTPLHDTAAEYDFVAIDQVERLNDQEQAVLFDIFNHFRNSQKGHL 148

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L++A   P    +   DL +R+    V ++     +   + +  M   RQ+ ID  +  Y
Sbjct: 149 LLSADVPPGRLHLR-EDLRTRMSYCLVYEVKSLSSEEKIQALANMAQARQLSIDPDIYRY 207

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +++   + L     + + + N ++++G  IT  L  ++LK+ +  
Sbjct: 208 LLEHWRQDLNSLLTMFNDLANYSITQGKPITLPLLRKLLKQQENA 252


>gi|254246245|ref|ZP_04939566.1| hypothetical protein BCPG_00978 [Burkholderia cenocepacia PC184]
 gi|124871021|gb|EAY62737.1| hypothetical protein BCPG_00978 [Burkholderia cenocepacia PC184]
          Length = 247

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 10/227 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78
             QL          + D+ ++    ++ V  +            P R   + G  GSG++
Sbjct: 5   SRQLTLDLGTPPPATFDNFIMSDENDELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 64

Query: 79  CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134
            L       +    +   +  +               ++D D + D     LF++ N + 
Sbjct: 65  HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 124

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
            + SS  + A            DL +RL    V  +S P D     V+     +R I + 
Sbjct: 125 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 184

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 185 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 231


>gi|170732082|ref|YP_001764029.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia MC0-3]
 gi|169815324|gb|ACA89907.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia MC0-3]
          Length = 244

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 10/227 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78
             QL          + D+ ++    ++ V  +            P R   + G  GSG++
Sbjct: 2   SRQLTLDLGTPPPATFDNFIMSDENDELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 61

Query: 79  CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134
            L       +    +   +  +               ++D D + D     LF++ N + 
Sbjct: 62  HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 121

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
            + SS  + A            DL +RL    V  +S P D     V+     +R I + 
Sbjct: 122 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 181

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 182 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228


>gi|156932962|ref|YP_001436878.1| DNA replication initiation factor [Cronobacter sakazakii ATCC
           BAA-894]
 gi|269969358|sp|A7ML17|HDA_ENTS8 RecName: Full=DnaA-homolog protein hda
 gi|156531216|gb|ABU76042.1| hypothetical protein ESA_00765 [Cronobacter sakazakii ATCC BAA-894]
          Length = 225

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 85/207 (41%), Gaps = 17/207 (8%)

Query: 47  SAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLD 101
            ++  A++ ++       S  +      G G+S L +        +  +  +  + K   
Sbjct: 20  PSLLAALQTMLRHDR---SGYIYFWSREGGGRSHLLHAACAELSQRGDAVGYVPLDKRTW 76

Query: 102 SIL-----IDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYD-SSLLMTARTFPVSWG 152
            +      ++    V +++I+ +  ++     +F++ N I +   + LL+T    P    
Sbjct: 77  FVPEVLEGMEQLSLVCIDNIECIAGDEPWEMAIFNLYNRILESGNTRLLITGDRPPRQLN 136

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
           + LPDL SRL    + ++    DD   + +      R   + + +  ++++R++R +   
Sbjct: 137 LKLPDLASRLDWGQIYRLQPLSDDDKLQALQLRARMRGFELPEDVGRFLLKRLDREMRTL 196

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVL 239
              +D++D  ++S    +T     + L
Sbjct: 197 FLTLDQLDRASISAQRKLTIPFVKDTL 223


>gi|332283314|ref|YP_004415225.1| hypothetical protein PT7_0061 [Pusillimonas sp. T7-7]
 gi|330427267|gb|AEC18601.1| hypothetical protein PT7_0061 [Pusillimonas sp. T7-7]
          Length = 233

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 96/231 (41%), Gaps = 19/231 (8%)

Query: 26  EQLFFSF--PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           +QL      P    +   D  V    ++AV+ +      P R V L G  G+G++ L   
Sbjct: 3   QQLILDLLPPSPPSL---DNFVAGQNQEAVQALRD--CSPGRAVYLWGAPGAGRTHLLQS 57

Query: 84  WSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQ-- 135
            +  + +  F +       +S+ S  +   + + +++++ LD +    LF + N   +  
Sbjct: 58  VASGADTRYFHHSDNAQSLRSIASADLLAYRLIAIDNVESLDDDRQAALFALYNRWREVA 117

Query: 136 ---YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
                 +L++     P++  +   DL +RL    V ++    D+   + +    ADR + 
Sbjct: 118 ATPQGFALVLAGDRAPLTMPLR-EDLRTRLGWDLVFRLEQLSDEHRAQALSTRAADRGLQ 176

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +  ++  +++    R +     L+D +D  +L R   IT  L  E+L   Q
Sbjct: 177 LGPEVINWVLTHYTRDMRHLSALIDALDRYSLERHRAITLPLLKELLASGQ 227


>gi|186477238|ref|YP_001858708.1| DnaA regulatory inactivator Hda [Burkholderia phymatum STM815]
 gi|184193697|gb|ACC71662.1| DnaA regulatory inactivator Hda [Burkholderia phymatum STM815]
          Length = 257

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 11/231 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSC 79
             QL          + D+    +  E   RL +   +  + P   R   + G +GSG++ 
Sbjct: 2   SRQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDAALAAGPVADRTFYVWGETGSGRTH 61

Query: 80  LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDF-NDTQLFHIINSIHQ 135
           L      ++     R++    SL +   D    +  ++D D L       LF+++N +  
Sbjct: 62  LLEALVHEAPPGHARYAGPQSSLAAFTFDPAVTLYAVDDCDRLSGAQQIALFNLVNEVRA 121

Query: 136 YDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           + +S L++     P+   V   DL +R+    V  ++   D+    V+ +   +R I + 
Sbjct: 122 HPTSALVVAGNAAPMGLEVR-EDLRTRMGWGLVFHVAPLADEGKAAVLKRAARERGINLA 180

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             + AY++    R +     L+D +D  +L +   +T  L   +L      
Sbjct: 181 DDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDNA 231


>gi|56460576|ref|YP_155857.1| DNA replication initiation ATPase [Idiomarina loihiensis L2TR]
 gi|56179586|gb|AAV82308.1| ATPase involved in DNA replication initiation [Idiomarina
           loihiensis L2TR]
          Length = 237

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 100/237 (42%), Gaps = 24/237 (10%)

Query: 25  EEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPS------WPSRVVILVGPSGSG 76
            +QL  +   P     S    L        +  ++S P+         ++  L G SG G
Sbjct: 3   PQQLPLAVQLPDDEIFS--TFLAGD-NSTLLSWLESLPTTEPPLRRSQQLTWLSGASGVG 59

Query: 77  KSCLAN-IWSDKSRSTRFSNIAKSLDSIL--------IDTRKPVLLEDIDLLDFNDT--- 124
           KS L + + +      R + +     +          ID    + L+DID +        
Sbjct: 60  KSHLMHSVIASAGSQYRIAYLPLRELAKADASAVLQGIDQADLICLDDIDTVTLEQNWSF 119

Query: 125 QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
           +LF +IN +   + + L+MTA+       V LPDL SR + AT  ++   +D+     ++
Sbjct: 120 ELFSLINRVTDNESTRLVMTAKQSAAQTKVLLPDLQSRFQWATGFQVQPLNDEEKINALI 179

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                R + +   +AA++ QR+ RS+    K ++++D  +++    +T     +VL+
Sbjct: 180 LRAQWRGLELPNDVAAFMTQRLGRSMRDLMKALNELDKASITYQRRLTIPFVKQVLE 236


>gi|88799318|ref|ZP_01114896.1| hypothetical protein MED297_16968 [Reinekea sp. MED297]
 gi|88777857|gb|EAR09054.1| hypothetical protein MED297_16968 [Reinekea sp. MED297]
          Length = 235

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 14/226 (6%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWS 85
           QL            +D L       A+  +  S  +    ++ L G  G G S L     
Sbjct: 9   QLPLHVSFAEDAVFEDYLPGQ-NAIAIGTLRQSLANLTDHLIYLWGAKGVGVSHLLQASI 67

Query: 86  DKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINSI 133
              +   F  +   L   L         +D    V L+DIDL+  +      +FH  N +
Sbjct: 68  HDLQVQGFDAVYLPLSECLEYGPEALEGLDQLHAVALDDIDLIAADAHWQEAVFHFYNRM 127

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
                 L++ AR  P+   + L DL SRL +   + +    D+     ++     R + I
Sbjct: 128 RDSGRHLMVGARCSPLQLPLTLADLKSRLSSGLTISLLPMTDEERVTWVIWKGRRRGLVI 187

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            + +A +++ R  +++       D++D+ +L+    IT     +VL
Sbjct: 188 GRDVAEFLITRHNQNMKELVTTFDRLDSASLAEKRKITIPFLKQVL 233


>gi|148827064|ref|YP_001291817.1| DNA replication initiation factor [Haemophilus influenzae PittGG]
 gi|148718306|gb|ABQ99433.1| DNA replication initiation factor [Haemophilus influenzae PittGG]
          Length = 185

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 71  GPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+D+  +  
Sbjct: 2   GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 61

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL    + +++   D+ 
Sbjct: 62  NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 121

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
             KV+      R   +  + A +++ R+ R +    + +D +D  +L     +T     E
Sbjct: 122 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 181

Query: 238 VLK 240
           +L 
Sbjct: 182 ILN 184


>gi|90408515|ref|ZP_01216673.1| DNA replication initiation factor [Psychromonas sp. CNPT3]
 gi|90310394|gb|EAS38521.1| DNA replication initiation factor [Psychromonas sp. CNPT3]
          Length = 242

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 18/195 (9%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLE 114
             V+ + G +GSG+S L +    +      S     L             +++   V ++
Sbjct: 47  EPVLYMWGDAGSGRSHLLHALCSEVDERGESVSYIPLHHHQGMSLDIFENMESVTLVCID 106

Query: 115 DIDLLDFN---DTQLFHIINS------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +ID +  N   +  LF   N            +SL+++A   P   G+ L DL SR +  
Sbjct: 107 NIDAIAGNAEWEKALFDFYNRWLDNKENRPTGASLVLSAMHLPKQIGIELKDLVSRFEWG 166

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
               +   +D+     +      + + +   +  +++ R+ R +      +D++DN +L 
Sbjct: 167 ACYHLEPLNDEEKLGALQLRAQLKGMKLPVDVGRFLLNRLSREMDTLLDTLDRLDNASLE 226

Query: 226 RGMGITRSLAAEVLK 240
               +T     EVL 
Sbjct: 227 AKRKLTIPFVKEVLD 241


>gi|57012733|sp|Q7N3G5|HDA_PHOLL RecName: Full=DnaA-homolog protein hda
 gi|36786074|emb|CAE15126.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 233

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81
           N   QL          +             +  I    + P    +        G+S L 
Sbjct: 2   NTPSQLSLPLYLPDDETFASFFPGE-NATLLAAIKLAINQPHGSYIYFWSRDSGGRSHLL 60

Query: 82  NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129
           +        K  +  +  + K    I      ++    V +++I+ +  ++     +F++
Sbjct: 61  HAACAELSLKDEAVGYVPLDKRAYFIPEVLDGMEHLSLVCIDNIESIAGDEEWEMAIFNL 120

Query: 130 INSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +   + LL++    P    + LPDL SRL    + K+    DD   + +      
Sbjct: 121 YNRILEIGRTCLLISGDRPPRQINLKLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAKL 180

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R   + + +  ++++R++R +      ++++D+ ++     +T     ++L 
Sbjct: 181 RGFELPEDVGRFLLKRLDREMRTLFMALNQLDHASIVAQRKLTIPFVKDILH 232


>gi|259907761|ref|YP_002648117.1| DNA replication initiation factor [Erwinia pyrifoliae Ep1/96]
 gi|224963383|emb|CAX54869.1| DnaA-homolog protein Hda [Erwinia pyrifoliae Ep1/96]
 gi|283477620|emb|CAY73536.1| Chromosomal replication initiator protein dnaA [Erwinia pyrifoliae
           DSM 12163]
 gi|310764732|gb|ADP09682.1| DNA replication initiation factor [Erwinia sp. Ejp617]
          Length = 235

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 81/233 (34%), Gaps = 17/233 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++                   G G+S L
Sbjct: 4   NTPAQLSLPLYLPDDETFASFWPGENPSLLAALQSALHQQH--GSYFYFWSREGGGRSHL 61

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128
            +    +  +   +     LD            ++    V +++I+ +  +   +  +F 
Sbjct: 62  LHAACAELSAKGEAVGYVPLDKRTWFVPEVLDGMEQLALVCIDNIECIAGDGPWEMAIFD 121

Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +     LL+T    P    + L DL SRL    + K+    D+   + +     
Sbjct: 122 LYNRILETGKTRLLITGDRPPRQLNLKLADLASRLDWGQIYKLQPLCDEDKLQALQLRAR 181

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            R   + + +  ++++R++R +      +D++D  ++S    +T     E L 
Sbjct: 182 LRGFELPEDVGRFLLKRLDREMRTLFVTLDQLDRASISAQRKLTIPFVKEALA 234


>gi|325981411|ref|YP_004293813.1| DnaA regulatory inactivator Hda [Nitrosomonas sp. AL212]
 gi|325530930|gb|ADZ25651.1| DnaA regulatory inactivator Hda [Nitrosomonas sp. AL212]
          Length = 225

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 85/223 (38%), Gaps = 10/223 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR--VVILVGPSGSGKSCLANI 83
           +Q+          + ++ L      + + ++ S  S   +   + L G  G GKS L   
Sbjct: 2   QQMLLDINPLPLPTLENFLPG-RNAELIYMLRSILSGKEKECFIYLWGNPGCGKSHLLRA 60

Query: 84  ----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID-LLDFNDTQLFHIINSIHQYDS 138
               ++ K+  + +                   ++DI  L      +LF + N + +   
Sbjct: 61  IVTAYARKNAKSVYHCAENHYPFRSDSAADCFAIDDIHGLGAAGQAELFSLYNRLREDGH 120

Query: 139 SLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           +LL+ +  T P    +   DL +RL    V ++    ++   + +    AD    + +++
Sbjct: 121 ALLLVSGSTAPAYLDMR-QDLVTRLGWGLVYQVHELTEEEKTQAMQTHAADCGFTLPQEI 179

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             Y+++   R L      +D ++  +L     IT  L  E+L+
Sbjct: 180 CVYLLRHGRRDLPSLMMTLDALNRYSLVHQRPITIPLLRELLQ 222


>gi|161579568|ref|NP_929986.2| DNA replication initiation factor [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 235

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81
           N   QL          +             +  I    + P    +        G+S L 
Sbjct: 4   NTPSQLSLPLYLPDDETFASFFPGE-NATLLAAIKLAINQPHGSYIYFWSRDSGGRSHLL 62

Query: 82  NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129
           +        K  +  +  + K    I      ++    V +++I+ +  ++     +F++
Sbjct: 63  HAACAELSLKDEAVGYVPLDKRAYFIPEVLDGMEHLSLVCIDNIESIAGDEEWEMAIFNL 122

Query: 130 INSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +   + LL++    P    + LPDL SRL    + K+    DD   + +      
Sbjct: 123 YNRILEIGRTCLLISGDRPPRQINLKLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAKL 182

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R   + + +  ++++R++R +      ++++D+ ++     +T     ++L 
Sbjct: 183 RGFELPEDVGRFLLKRLDREMRTLFMALNQLDHASIVAQRKLTIPFVKDILH 234


>gi|302877846|ref|YP_003846410.1| DnaA regulatory inactivator Hda [Gallionella capsiferriformans
           ES-2]
 gi|302580635|gb|ADL54646.1| DnaA regulatory inactivator Hda [Gallionella capsiferriformans
           ES-2]
          Length = 222

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 7/217 (3%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIW 84
           QL          + D+  V     + + ++    S     R V + G  GSGKS L    
Sbjct: 3   QLLLDITPDWWPTFDNF-VAGGNAELLSVLHQALSGESTDRCVYVWGADGSGKSHLLQAC 61

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMT 143
              +++   + I       + +  + V ++D D LD     +LF++ N +      LL++
Sbjct: 62  VGVAQNAHLNAIYAQ--GYVPEPAEVVAVDDADTLDEAGQIELFNLYNWMRDSGGMLLVS 119

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
             + P+   V   DL +RL    V ++    D+     +V     R   +  ++  Y+++
Sbjct: 120 GLSSPLHLNVR-ADLRTRLGWGLVYQVQGLSDEEKALALVGHAQGRGFALAPEVVQYLLR 178

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              R L     ++D +D  +L      +  L  EV++
Sbjct: 179 HGRRDLPSLLTVLDALDEHSLRLHRAPSIPLLKEVMQ 215


>gi|33151946|ref|NP_873299.1| DNA replication initiation factor [Haemophilus ducreyi 35000HP]
 gi|33148168|gb|AAP95688.1| conserved probable chromosomal replication initiator protein
           [Haemophilus ducreyi 35000HP]
          Length = 236

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 82/196 (41%), Gaps = 20/196 (10%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS-----RSTRF----SNIAKSLDSILIDTRKPVLLE 114
                + G    GKS L    S++       ++      S+    L    I+    + L+
Sbjct: 39  QPFFYIWGAKSCGKSHLLKAVSNQYLLSQKTASYIPLTKSHYFSPLVLDNIEQMDVICLD 98

Query: 115 DIDLLDFNDT---QLFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           D+  +  N+     +F + N I +        + + LL++A   P    + LPDL SRL 
Sbjct: 99  DLQAIANNEEWELAIFDLFNKIREQQSLFNQGHKTLLLISANCSPHQLKIKLPDLKSRLT 158

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              V ++    DD    ++ +    + I + +++A ++++R++R L      +DK+D  +
Sbjct: 159 WGEVYQLYDLTDDQKIVILQRKAYQKGIELSEEVANFLLKRLDRDLPVLLAELDKLDRAS 218

Query: 224 LSRGMGITRSLAAEVL 239
           L     +T     E++
Sbjct: 219 LQAKRKLTMPFVKEII 234


>gi|300309966|ref|YP_003774058.1| DnaA regulatory inactivator Hda protein [Herbaspirillum seropedicae
           SmR1]
 gi|300072751|gb|ADJ62150.1| DnaA regulatory inactivator Hda protein [Herbaspirillum seropedicae
           SmR1]
          Length = 238

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 86/237 (36%), Gaps = 20/237 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQ--------AVRLIDSWP----SWPSRVVILVGPS 73
           +Q+          S D   V     +        A   +D       +   R + L   +
Sbjct: 2   KQIPLDLSADQPQSFDSF-VTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60

Query: 74  GSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLF 127
           G+GK+ L    + +      ++      +              LL+D+D L +      F
Sbjct: 61  GAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAAF 120

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           ++ N I +    ++ +    P    +   DL +RL    + ++    DD     ++++  
Sbjct: 121 NLFNQIREQGGWMVCSGTLPPTRLELR-EDLRTRLGWGLIYQVHDLSDDEKIAALLQITL 179

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           DR + I   +  Y++    R +    +++D +D  +L+    IT  L  E+L++   
Sbjct: 180 DRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQESG 236


>gi|115350708|ref|YP_772547.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria AMMD]
 gi|115280696|gb|ABI86213.1| Chromosomal replication initiator, DnaA [Burkholderia ambifaria
           AMMD]
          Length = 318

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 10/227 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78
             QL          + D+ +++   ++ +  +            P R   + G  GSG++
Sbjct: 76  SRQLTLDLGTPPPATFDNFIMNEENDELISRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 135

Query: 79  CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134
            L       +    +   +  +               ++D D + D     LF++ N + 
Sbjct: 136 HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 195

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
            + SS  + A            DL +RL    V  +S P D     V+     +R I + 
Sbjct: 196 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 255

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 256 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 302


>gi|187929928|ref|YP_001900415.1| DnaA regulatory inactivator Hda [Ralstonia pickettii 12J]
 gi|241664038|ref|YP_002982398.1| DnaA regulatory inactivator Hda [Ralstonia pickettii 12D]
 gi|309781370|ref|ZP_07676106.1| DnaA regulatory inactivator Hda [Ralstonia sp. 5_7_47FAA]
 gi|187726818|gb|ACD27983.1| conserved hypothetical protein [Ralstonia pickettii 12J]
 gi|240866065|gb|ACS63726.1| DnaA regulatory inactivator Hda [Ralstonia pickettii 12D]
 gi|308919783|gb|EFP65444.1| DnaA regulatory inactivator Hda [Ralstonia sp. 5_7_47FAA]
          Length = 233

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS------WPSWPSRVVILVGPSGSGKS 78
            EQL          + D+  V +  E+AV  + +        +   R+V L G  GSG+S
Sbjct: 4   PEQLPLELGATPAPTFDNF-VATGNEEAVLRLRALIPQVVDGTATDRLVYLWGEEGSGRS 62

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD-FNDTQLFHIINS 132
            L      ++ +  +       D+         T     ++D + LD +    +F+++N 
Sbjct: 63  HLLQAICAQTEAGGYEVRTLEPDAPPEAFEFDPTITVWTIDDAERLDEWAQIAVFNLVNE 122

Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +  +  + +  +    P++  +   DL +RL    V  +    D    + + +   +R +
Sbjct: 123 VRAHPHAAIAISGAAAPMAMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALRQAARERGM 181

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +   +  ++V    R +     L+D +D  +L+R   +T  L  ++L 
Sbjct: 182 QLSADVPQWLVTHSYRDMPSLMALLDALDTYSLARKRAVTLPLVRDMLA 230


>gi|157371756|ref|YP_001479745.1| DNA replication initiation factor [Serratia proteamaculans 568]
 gi|157323520|gb|ABV42617.1| Chromosomal replication initiator DnaA [Serratia proteamaculans
           568]
          Length = 203

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
              +      G G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 13  GSYIYFWSREGGGRSHLLHASCAELSLRGEAVGYVPLDKRAYFVPEVLDGMEQLALVCID 72

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F++ N I +     L +T    P    + LPDL SRL    + K+
Sbjct: 73  NIECIAGDEEWEMAIFNLYNRILETGRTRLFITGDRPPRQLNLHLPDLASRLDWGQIYKL 132

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+     +      R   + + +  ++++R++R +      +D++D+ +++    +
Sbjct: 133 QPLSDEEKLLALQLRGKLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKL 192

Query: 231 TRSLAAEVL 239
           T     E+L
Sbjct: 193 TIPFVKEIL 201


>gi|291618377|ref|YP_003521119.1| Hda [Pantoea ananatis LMG 20103]
 gi|291153407|gb|ADD77991.1| Hda [Pantoea ananatis LMG 20103]
          Length = 249

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++   S        +      G G+S L
Sbjct: 18  NTPAQLSLPLYLPDDETFASFWPGENPSLIAAIKGALSQQH--GSYLYFWSREGGGRSHL 75

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +    +  +   +     LD            ++    V +++I  +   +     +F 
Sbjct: 76  LHAACAEMSARGEAVGYVPLDKRTWFVPDVLEGMEQLPLVCIDNIQCIAGEEAWEMAIFD 135

Query: 129 IINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +   + L +T    P    + LPDL SRL    + ++    D+   + +     
Sbjct: 136 LYNRILETGNTRLFITGDRPPRQLNLHLPDLASRLDWGQIYRLQPLSDEDKLQALQLRAG 195

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D+ ++S    +T     E L
Sbjct: 196 LRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDSASISAQRKLTIPFVKETL 247


>gi|109898802|ref|YP_662057.1| chromosomal replication initiator, DnaA [Pseudoalteromonas
           atlantica T6c]
 gi|109701083|gb|ABG41003.1| regulatory inactivation of DnaA Hda protein [Pseudoalteromonas
           atlantica T6c]
          Length = 237

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 90/237 (37%), Gaps = 24/237 (10%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--------PSWPSRVVILVGPSGSG 76
            +QL  +       + D  +V   +    RL              W   +  + G  G G
Sbjct: 2   SKQLSLAVNLRDTETFDSFIVGENLHLVHRLKSLLNKTLNTKNQPW---LTFVSGDHGVG 58

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT--- 124
           KS L      K++S   S +  S              ++  + + L+D D L  + T   
Sbjct: 59  KSHLLYSLCHKAQSANVSAVYLSFKDKQQYSPEVLDGLEHSQLICLDDADALQDSQTWQI 118

Query: 125 QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +F ++N + +     +++ A   P S  + L DL SRL       ++   D+     ++
Sbjct: 119 AVFDLLNRVKELGRSHVVVCANGGPTSLNLQLADLASRLAWGVSFTLASLSDEGRCVALL 178

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                R + + +K+A Y+V   +R +      +DK+D L+L +   +T     E L 
Sbjct: 179 TRARQRGLVMPEKVAMYLVNHWQRDMPSLMNTLDKLDQLSLQQQRKLTIPFVKEALN 235


>gi|167586242|ref|ZP_02378630.1| hypothetical protein BuboB_12938 [Burkholderia ubonensis Bu]
          Length = 244

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 77/227 (33%), Gaps = 10/227 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78
             QL          + D+ +      + V  +            P R   + G  GSG+S
Sbjct: 2   SRQLTLDLGTPPPATFDNFITGEENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRS 61

Query: 79  CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134
            L       +    +   +  +               ++D D + D     LF++ N + 
Sbjct: 62  HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 121

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
            + SS  + A            DL +RL    V  +S P D     V+     +R I + 
Sbjct: 122 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 181

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 182 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228


>gi|332306898|ref|YP_004434749.1| DnaA regulatory inactivator Hda [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174227|gb|AEE23481.1| DnaA regulatory inactivator Hda [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 237

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 91/237 (38%), Gaps = 24/237 (10%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID--------SWPSWPSRVVILVGPSGSG 76
            +QL  +       + D  +V        RL              W   +  + G  G G
Sbjct: 2   SKQLSLAVNLRDTETFDSFIVGENSHLVHRLKSLLNKTLNTKSQPW---LTFVSGEHGVG 58

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT--- 124
           KS L      K++S   + +  S              ++  + + L+D+D L  + T   
Sbjct: 59  KSHLLYSLCHKAQSANVTAVYLSFKEKQQYSPEVLDGLEHSQLICLDDVDALQDSQTWQI 118

Query: 125 QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +F ++N + +   S ++  A   P+S  + L DL SRL       ++   D+     ++
Sbjct: 119 AVFDLLNRVKELGISHVVACANGGPMSLNLQLADLASRLAWGVSFTLASLSDEGRCVALL 178

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                R + + +K+A Y+V   +R +      +DK+D L+L +   +T     E L 
Sbjct: 179 TRAKQRGLVMPEKVAVYLVNHWQRDMPSLMNTLDKLDQLSLQQQRKLTIPFVKEALN 235


>gi|329119305|ref|ZP_08247992.1| DnaA regulatory inactivator Hda [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464652|gb|EGF10950.1| DnaA regulatory inactivator Hda [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 222

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 13/227 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL F F R      D  L  +A  + V ++        R V + G +G+GKS L   W+
Sbjct: 2   DQLIFDFARRDYPGFDKFL-GAANRELVFVLQQAR---ERFVYVWGAAGTGKSHLLRAWA 57

Query: 86  DKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYD-S 138
            ++      +         LD+  ++  + + ++  D L   +  L F I N        
Sbjct: 58  GQAARQGADARYIDAKTMPLDASALEA-EYLAVDQADRLKPAEQALLFEIFNRFRNSGRG 116

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            LL++A   P    V   DL +R+    V  I    D+     +  M   RQ+ +D+ + 
Sbjct: 117 RLLLSADLPPAQLAVR-EDLRTRMGYCLVYDIKPLSDEEKIAALTGMARARQLDLDEGIF 175

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            Y++   +R +    K++D +   A +    +T  L   +LK+ +  
Sbjct: 176 RYLLNYWQRDMDSLVKMLDTLCLYAATTRRRMTLPLLRRLLKQQETA 222


>gi|292489006|ref|YP_003531893.1| chromosomal replication initiator protein dnaA [Erwinia amylovora
           CFBP1430]
 gi|292900140|ref|YP_003539509.1| DnaA-homolog protein [Erwinia amylovora ATCC 49946]
 gi|291199988|emb|CBJ47112.1| DnaA-homolog protein [Erwinia amylovora ATCC 49946]
 gi|291554440|emb|CBA21926.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora
           CFBP1430]
 gi|312173170|emb|CBX81425.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora
           ATCC BAA-2158]
          Length = 235

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 72/190 (37%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114
                     G G+S L +    +  +   +     LD            ++    V ++
Sbjct: 45  GSYFYFWSREGGGRSHLLHAACAELSAKGEAVGYVPLDKRTWFVPEVLDGMEQLALVCID 104

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  +   +  +F + N I +     LL+T    P    + L DL SRL    + K+
Sbjct: 105 NIECIAGDSPWEMAIFDLYNRILETGKTRLLITGDRPPRQLNLKLADLASRLDWGQIYKL 164

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+   + +      R   + + +  ++++R++R +      +D++D  ++S    +
Sbjct: 165 QPLCDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFATLDQLDRASISAQRKL 224

Query: 231 TRSLAAEVLK 240
           T     E L 
Sbjct: 225 TIPFVKEALA 234


>gi|167563973|ref|ZP_02356889.1| hypothetical protein BoklE_15562 [Burkholderia oklahomensis EO147]
 gi|167571117|ref|ZP_02363991.1| hypothetical protein BoklC_14847 [Burkholderia oklahomensis C6786]
          Length = 241

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 9/231 (3%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSC 79
             QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S 
Sbjct: 4   SRQLTLDLGTPPPATFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSH 63

Query: 80  LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135
           L       +     R+ +    LD+ + D R  +  ++D D L D     LF++ N +  
Sbjct: 64  LLQALVHDTTYGHARYVSPQSGLDAFVFDPRASLYAVDDCDALNDAQQIALFNLFNEVRA 123

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           +  + L+ A            DL +RL    V  ++   D+    V+     +R I +  
Sbjct: 124 HPMTALVAAGPAAPLALDVREDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 183

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 184 DVPSYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRAMLAAPERDE 234


>gi|165761334|pdb|3BOS|A Chain A, Crystal Structure Of Putative Dna Replication Regulator
           Hda (Yp_927791.1) From Shewanella Amazonensis Sb2b At
           1.75 A Resolution
 gi|165761335|pdb|3BOS|B Chain B, Crystal Structure Of Putative Dna Replication Regulator
           Hda (Yp_927791.1) From Shewanella Amazonensis Sb2b At
           1.75 A Resolution
          Length = 242

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 90/243 (37%), Gaps = 18/243 (7%)

Query: 14  DKQKNDQPKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILV 70
             + N   ++   QL      P     +       +  ++ +  + S  S    + + L 
Sbjct: 1   GXRSNRVTQHPPLQLSLPVHLPDDETFTS--YYPAAGNDELIGALKSAASGDGVQAIYLW 58

Query: 71  GPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           GP  SG++ L +    ++                   +     ++    + ++D+D +  
Sbjct: 59  GPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAG 118

Query: 122 N---DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           +   +  +F + N + +    SL+++A   P   G  LPDL SR       ++    DD 
Sbjct: 119 HPLWEEAIFDLYNRVAEQKRGSLIVSASASPXEAGFVLPDLVSRXHWGLTYQLQPXXDDE 178

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
               + +  A R + + + +  +++ R  R L     ++D++D  +      +T     E
Sbjct: 179 KLAALQRRAAXRGLQLPEDVGRFLLNRXARDLRTLFDVLDRLDKASXVHQRKLTIPFVKE 238

Query: 238 VLK 240
            L+
Sbjct: 239 XLR 241


>gi|134294832|ref|YP_001118567.1| DnaA regulatory inactivator Hda [Burkholderia vietnamiensis G4]
 gi|134137989|gb|ABO53732.1| Chromosomal replication initiator, DnaA [Burkholderia vietnamiensis
           G4]
          Length = 244

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 10/226 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKSC 79
            QL          + D+ +++   ++ V  +            P R   + G  GSG++ 
Sbjct: 3   RQLTLDLGTPPPATFDNFIMNEENDELVSRLQKLDLALAAGPVPDRSFYIWGEPGSGRTH 62

Query: 80  LANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQ 135
           L       +    +   +  +               ++D D + D     LF++ N +  
Sbjct: 63  LLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDKMSDTQQVALFNLFNEVRA 122

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           + SS  + A            DL +RL    V  +S P D     V+     +R I +  
Sbjct: 123 HPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALTD 182

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 183 DIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228


>gi|189462574|ref|ZP_03011359.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136]
 gi|189430735|gb|EDU99719.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136]
          Length = 469

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 93/241 (38%), Gaps = 29/241 (12%)

Query: 33  PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCL-------- 80
           P      + ++ +  ++ E +  + ++    P+R    + L GPSG GK+ L        
Sbjct: 130 PHLNPNYNFENFIKGTSNEFSRTVAETVAQNPARTFNPLFLYGPSGVGKTHLINAIGTRI 189

Query: 81  -------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDT 124
                        A+++  +   +  +N           T   ++++DI           
Sbjct: 190 KELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF-ISFYQTIDVLIIDDIQEFAGVTKTQN 248

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             FHI N +HQ    L++T+   PV        L +R K   V ++  PD +  + ++  
Sbjct: 249 TFFHIFNHLHQNGKQLILTSDRAPVMLQGMEDRLLTRFKWGLVAELEKPDIELRKNILRN 308

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 + I + +  YI + +  S+   E +V+ +   ++     I   LA  ++++  +
Sbjct: 309 KIRRDGLVIPESVICYIAENVNESVRELEGIVNSLLVYSIQLKREINLDLAQRIVRKAVR 368

Query: 245 C 245
           C
Sbjct: 369 C 369


>gi|327394769|dbj|BAK12191.1| DnaA- protein Hda [Pantoea ananatis AJ13355]
          Length = 258

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 17/232 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N   QL          +          ++  A++   S        +      G G+S L
Sbjct: 27  NTPAQLSLPLYLPDDETFASFWPGENPSLIAAIKGALSQQH--GSYLYFWSREGGGRSHL 84

Query: 81  ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT---QLFH 128
            +    +  +   +     LD            ++    V +++I  +   +     +F 
Sbjct: 85  LHAACAEMSARGEAVGYVPLDKRTWFVPDVLEGMEQLPLVCIDNIQCIAGEEAWEMAIFD 144

Query: 129 IINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + N I +   + L +T    P    + LPDL SRL    + ++    D+   + +     
Sbjct: 145 LYNRILETGNTRLFITGDRPPRQLNLHLPDLASRLDWGQIYRLQPLSDEDKLQALQLRAG 204

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            R   + + +  ++++R++R +      +D++D+ ++S    +T     E L
Sbjct: 205 LRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDSASISAQRKLTIPFVKETL 256


>gi|172059739|ref|YP_001807391.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MC40-6]
 gi|171992256|gb|ACB63175.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MC40-6]
          Length = 318

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 10/227 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78
             QL          + D+ +++   ++ +  +            P R   + G  GSG++
Sbjct: 76  SRQLTLDLGTPPPATFDNFIMNEENDELISRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 135

Query: 79  CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134
            L       +    +   +  +               ++D D + D     LF++ N + 
Sbjct: 136 HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 195

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
            + SS  + A            DL +RL    V  +S P D     V+     +R I + 
Sbjct: 196 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 255

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 256 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 302


>gi|114332207|ref|YP_748429.1| hypothetical protein Neut_2247 [Nitrosomonas eutropha C91]
 gi|114309221|gb|ABI60464.1| regulatory inactivation of DnaA Hda protein [Nitrosomonas eutropha
           C91]
          Length = 221

 Score =  148 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLAN- 82
            QL          S D+ +     E+ +  + +    +   R   L G +GSGKS L   
Sbjct: 2   RQLLLDITEIGPPSLDNFIP-EGNEELLYTLRNLVADNRQDRFYYLWGNTGSGKSHLLQA 60

Query: 83  ---IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDS 138
              I+ ++ R+T + +  ++ +     T   + +++I+ LD  +  +LF++ N I +   
Sbjct: 61  VTNIFMEQQRNTHYIDCNQADEIDFNLTADCIAVDNIEQLDDAEQIRLFNLYNQIRESKY 120

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            + +   T P +     PDL +RL    V ++    D+   +V+          +   + 
Sbjct: 121 GIFLAGGTRPPAQLGLRPDLTTRLGWGLVYQVHELTDEKKIEVMQDYAIRCGFELPLDVC 180

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            Y+++  +R L    + V  +D L+L+R   +T  L  E+L
Sbjct: 181 NYLLKHEQRDLSSLIRQVSALDQLSLTRQRPVTLPLLRELL 221


>gi|257094035|ref|YP_003167676.1| DnaA regulatory inactivator Hda [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046559|gb|ACV35747.1| DnaA regulatory inactivator Hda [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 218

 Score =  148 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 9/220 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANI 83
            QL       +  S D+  V  +  +A+  + SW  P     V  L G +G+GKS L   
Sbjct: 2   RQLILDLLPEVPPSLDNY-VTGSNAEALTGLASWLAPVNREPVFFLWGEAGAGKSHLLQA 60

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLM 142
               S+++          + +        +++I+ LD +     F++IN +      LL+
Sbjct: 61  ----SQASYSDARQDPGLAAVDLQDTLHAIDNIEALDASGQVAAFNLINRLRADGGRLLV 116

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
            A   P+   +   DL +RL +  V ++    D      + +    R + +  +   Y+ 
Sbjct: 117 AASVPPLRLALR-EDLRTRLGSGLVYRLQPLSDPEKLAALAEQARARGLVLPAEAFNYLF 175

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            R  R +     L+  +D  +L     IT  L  EVL+ +
Sbjct: 176 ARAPRDMRSLTALLIAIDRYSLEHKRPITLPLLREVLQSS 215


>gi|78065321|ref|YP_368090.1| hypothetical protein Bcep18194_A3847 [Burkholderia sp. 383]
 gi|206561601|ref|YP_002232366.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia J2315]
 gi|77966066|gb|ABB07446.1| DNA replication initiation-like ATPase [Burkholderia sp. 383]
 gi|198037643|emb|CAR53586.1| DnaA-homolog protein Hda [Burkholderia cenocepacia J2315]
          Length = 244

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 79/227 (34%), Gaps = 10/227 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78
             QL          + D+ +++   ++ +  +            P R   + G  G G++
Sbjct: 2   SRQLTLDLGTPPPATFDNFIMNEENDELISRLQKLDLALAAGPVPDRSFYIWGEPGCGRT 61

Query: 79  CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134
            L       +    +   +  +               ++D D + D     LF++ N + 
Sbjct: 62  HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 121

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
            + SS  + A            DL +RL    V  +S P D     V+     +R I + 
Sbjct: 122 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 181

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 182 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228


>gi|171320264|ref|ZP_02909320.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MEX-5]
 gi|171094493|gb|EDT39551.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MEX-5]
          Length = 244

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 10/227 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78
             QL          + D+ +++   ++ +  +            P R   + G  GSG++
Sbjct: 2   SRQLTLDLGTPPPATFDNFIMNEENDELISRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 61

Query: 79  CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134
            L       +    +   +  +               ++D D + D     LF++ N + 
Sbjct: 62  HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 121

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
            + SS  + A            DL +RL    V  +S P D     V+     +R I + 
Sbjct: 122 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 181

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 182 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228


>gi|170698325|ref|ZP_02889400.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria IOP40-10]
 gi|170136744|gb|EDT04997.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria IOP40-10]
          Length = 244

 Score =  147 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 10/227 (4%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78
             QL          + D+ +++   ++ +  +            P R   + G  GSG++
Sbjct: 2   SRQLTLDLGTPPPATFDNFIMNEENDELISRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 61

Query: 79  CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134
            L       +    +   +  +               ++D D + D     LF++ N + 
Sbjct: 62  HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 121

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
            + SS  + A            DL +RL    V  +S P D     V+     +R I + 
Sbjct: 122 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 181

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 182 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228


>gi|85709210|ref|ZP_01040276.1| ATPase [Erythrobacter sp. NAP1]
 gi|85690744|gb|EAQ30747.1| ATPase [Erythrobacter sp. NAP1]
          Length = 186

 Score =  147 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 31/207 (14%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           + +A  Q V  + +  SWP    +L GP  SGKS L N  + +                 
Sbjct: 1   MGNANLQVVEALQNPVSWPFNTAVLTGPPRSGKSLLGNWAAGQG---------------- 44

Query: 105 IDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQ----YDSSLLMTARTFPVSWGVCLPDLC 159
                   +E ID  D  ++ ++FH  N++ +      + LL+ A + P  W + LPDL 
Sbjct: 45  --------IEVIDRADTLDEAEVFHRWNAVQEGGSRAGTKLLLIADSTP--WEISLPDLK 94

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SRL  +  + I  PDD    ++I      R + + +  A Y+V R  RS    E LV  +
Sbjct: 95  SRLGGSLQLAIGDPDDAMAAQLIEAHAEARGLTLAEGAADYLVPRTRRSFADIEALVRTI 154

Query: 220 DNLALSRGMGITRSLAAEVLKETQQCD 246
           D ++L R    T S+    L+     D
Sbjct: 155 DRISLERAAPATMSVWRAALEALHGPD 181


>gi|167837743|ref|ZP_02464626.1| hypothetical protein Bpse38_14737 [Burkholderia thailandensis
           MSMB43]
          Length = 241

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 9/231 (3%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSC 79
             QL          + D+    +  E   RL +   +  + P   R   + G +GSG+S 
Sbjct: 4   SRQLTLDLGTPPPATFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSH 63

Query: 80  LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135
           L       +     R+ +    LD++  D R  +  ++D D L D     LF++ N +  
Sbjct: 64  LLQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRA 123

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           +  + L+ A            DL +RL    V  ++   D+    V+     +R I +  
Sbjct: 124 HPMTALVAAGPAAPLALDVREDLRTRLGWGLVFHLTPLTDEGKVAVLKHAAKERGIALAD 183

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +Y++    R +     L+D +D  +L +   +T  L   +L   ++ +
Sbjct: 184 DVPSYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRAMLAAPERDE 234


>gi|325297173|ref|YP_004257090.1| Chromosomal replication initiator protein dnaA [Bacteroides
           salanitronis DSM 18170]
 gi|324316726|gb|ADY34617.1| Chromosomal replication initiator protein dnaA [Bacteroides
           salanitronis DSM 18170]
          Length = 469

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 92/241 (38%), Gaps = 29/241 (12%)

Query: 33  PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCL-------- 80
           P      + ++ +  ++ E ++ + ++    P+R    + L GPSG GK+ L        
Sbjct: 130 PHLNPNYNFENFIKGTSNEFSLTVAETVAQNPARTFNPLFLYGPSGVGKTHLINAIGTRI 189

Query: 81  -------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDT 124
                        A+++  +   +  +N               ++++DI           
Sbjct: 190 KELYPEKRVLYISAHLFQVQYTDSIRTNHFNDF-ITFYQQIDVLIIDDIQEFAGVTKTQN 248

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             FHI N +HQ    L++T+   PV        L +R K   + ++  PD D  + ++  
Sbjct: 249 TFFHIFNHLHQNGKQLILTSDRAPVMLQGIEDRLLTRFKWGLIAELERPDIDLRKNILRS 308

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 + I   +  YI + +  S+   E +V+ +   ++     I   LA  ++++  +
Sbjct: 309 KIRRDGLNIPDAVINYIAENVNESVRELEGIVNSLLVYSIQLKREINLDLAQHIVQKAVR 368

Query: 245 C 245
           C
Sbjct: 369 C 369


>gi|330815627|ref|YP_004359332.1| Chromosomal replication initiator protein DnaA [Burkholderia
           gladioli BSR3]
 gi|327368020|gb|AEA59376.1| Chromosomal replication initiator protein DnaA [Burkholderia
           gladioli BSR3]
          Length = 241

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--ID-SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + ++  + +  E   RL  +D +  + P   R   + G +GSG+S L
Sbjct: 5   RQLTLDLGTPPPRTFENFTIGANDELVSRLRRLDLALAAGPVADRSFYVWGEAGSGRSHL 64

Query: 81  AN--IWSDKSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFNDT-QLFHIINSIHQY 136
               ++     S R+      L +I  D R  +  ++DID +  N    LF++ N +  +
Sbjct: 65  LQALVYDTSYGSARYLTPQSPLGAIAFDPRVSLYAVDDIDAMSDNQQIALFNLFNEVRAH 124

Query: 137 DSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
            SS  +      P++  V   DL +RL    V  ++   D     V  +   DR I I  
Sbjct: 125 PSSAFVGAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLSDADKAAVFKRAARDRGIAIAD 183

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            + AY++    R +     L+D +D  +L +   +T  L   +L   ++
Sbjct: 184 DVPAYLLTHYRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTLLATLER 232


>gi|238026308|ref|YP_002910539.1| DnaA regulatory inactivator Hda [Burkholderia glumae BGR1]
 gi|237875502|gb|ACR27835.1| Chromosomal replication initiator protein DnaA [Burkholderia glumae
           BGR1]
          Length = 334

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--ID-SWPSWP--SRVVILVGPSGSGKSCL 80
            QL          + ++  +    E   RL  +D +  + P   R   + G +GSG+S L
Sbjct: 98  RQLTLDLGTPPPATFENFTIGPNDELVSRLRRLDLALAAGPVADRSFYVWGEAGSGRSHL 157

Query: 81  ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +   S R+      L +I  D R  +  ++DID + D     LF++ N +  +
Sbjct: 158 LQALVHDTSYGSARYLTPQSPLGAIAFDPRVSLYAVDDIDAMSDTQQIALFNLFNEVRAH 217

Query: 137 DSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
            SS  +      P++  V   DL +RL    V  ++   D     V  +    R I I  
Sbjct: 218 PSSAFVGAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLSDADKAVVFKQAAKARGIAIAD 276

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            + AY++    R +     L+D +D  +L +   +T  L   +L   ++
Sbjct: 277 DVPAYLLTHYRRDMPSLMALLDALDRFSLEQKRAVTLPLLRALLTALER 325


>gi|90417462|ref|ZP_01225385.1| DnaA family protein [marine gamma proteobacterium HTCC2207]
 gi|90330703|gb|EAS45982.1| DnaA family protein [marine gamma proteobacterium HTCC2207]
          Length = 234

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 95/234 (40%), Gaps = 20/234 (8%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLV--HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           N+ +QL  +       + D+      +    A  L+        +   + G SG+G S L
Sbjct: 2   NEFQQLSLAIKLDNQATFDNFYAPTGTPQHLAKMLL---QDEGKQYAYVCGSSGTGLSHL 58

Query: 81  ANIWSDKS------RSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFNDTQ--- 125
                 +        +  +  + +  D         +++   V L+D+D +   +     
Sbjct: 59  MQAVCQQHSTGLNNGAAVYLPLKELCDYPAGQVLEGLESSDLVCLDDLDQVAGREEWQAP 118

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           LF+  N   +  + LL+TA T P    V L DL SRLK+   +++    D  L +++   
Sbjct: 119 LFNFFNRCSESGTRLLITAHTLPDYLEVLLDDLLSRLKSGISLQLMDYKDADLRRLLQHR 178

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +   +++  ++A +++ R+ R+       ++K+D ++L     +T      VL
Sbjct: 179 ASGLGLYLSDEVARFLLHRLPRNSHLLMDALEKLDAVSLREQRRLTLPFVKTVL 232


>gi|224027038|ref|ZP_03645404.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM
           18228]
 gi|224020274|gb|EEF78272.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM
           18228]
          Length = 469

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 99/261 (37%), Gaps = 36/261 (13%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68
           P+  +   P++         P      + ++ +  ++ E +  + ++    P+R    + 
Sbjct: 118 PNPLQAAAPQD------LD-PHLNPNYNFENFIKGTSNEFSRTVAETVAQNPARTFNPLF 170

Query: 69  LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107
           L GPSG GK+ L                     A+++  +   +  +N           T
Sbjct: 171 LYGPSGVGKTHLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF-ISFYQT 229

Query: 108 RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              ++++DI             FHI N +HQ    L++T+   PV        L +R K 
Sbjct: 230 IDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEDRLLTRFKW 289

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             V ++  PD +  + ++        + I + +  YI + +  S+   E +V+ +   ++
Sbjct: 290 GLVAELEKPDIELRKNILRNKIRRDGLTIPESVICYIAENVNESVRELEGIVNSLLAQSI 349

Query: 225 SRGMGITRSLAAEVLKETQQC 245
                I   LA  ++++  +C
Sbjct: 350 LLKREINLDLAQRIVRKAVRC 370


>gi|332974687|gb|EGK11604.1| DNA replication initiation protein A family protein [Kingella
           kingae ATCC 23330]
          Length = 264

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL F F       R D L+  A      LI        + + + G  GSGKS +   W  
Sbjct: 45  QLAFDFD-EPAYPRFDKLLGHANA---ELIYILQQEHDQFLYIWGEQGSGKSHILQAWVG 100

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDLLDFNDTQ-LFHIINSIHQYDS-SL 140
           ++       +   + S  +         V ++ ++ L+  +   LF++ N         L
Sbjct: 101 QAMQAGHRALYIDVGSTPLTDAAADYDFVAIDQVEKLNAQEQATLFYVFNCFRNSKKGHL 160

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L++A   P    +   DL +R+      ++     +   + +  M   RQ+ ID  +  Y
Sbjct: 161 LLSADVAPSKLQLR-EDLRTRMSFCLAYEVKSLSQEEKIEALTNMAHARQLNIDPAIYHY 219

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +++   + L     + + + N ++++G  IT  L  ++LK+ +Q 
Sbjct: 220 LLEHWRQDLHSLLSMFNDLANYSITQGKPITLPLLRKLLKQQEQA 264


>gi|312795199|ref|YP_004028121.1| DnaA-related protein [Burkholderia rhizoxinica HKI 454]
 gi|312166974|emb|CBW73977.1| DnaA-related protein [Burkholderia rhizoxinica HKI 454]
          Length = 274

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 11/227 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----PSRVVILVGPSGSGKSCL 80
            QL          + ++    +  E   RL     +        R   + G +GSG+S L
Sbjct: 47  RQLTLDLGTPPPKTFENFFAGAHAELVARLAGLDAALAAGPVADRTFYVWGDAGSGRSHL 106

Query: 81  ANIW---SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQY 136
                  +   R+   + ++               ++D+D L       LF++ N +   
Sbjct: 107 LQALVAGASSGRARFVAPLSPLSAFGYDPRVAIYAVDDVDQLADAQQIALFNLFNEVRAS 166

Query: 137 -DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
             S+L+ T    P+   V   DL +RL    V  +    D+    V+     +R + +  
Sbjct: 167 PGSALVATGNAAPLHLAVR-EDLRTRLGWGLVFHLGALTDEGKAAVLKHAARERGLTLAD 225

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            + A+++    R +    +++D++D  AL     +T  L   +L ++
Sbjct: 226 DVPAWLLTHYHRDMPSLMRVLDELDRFALEHKRAVTLPLLRAMLADS 272


>gi|118594068|ref|ZP_01551415.1| hypothetical protein MB2181_00330 [Methylophilales bacterium
           HTCC2181]
 gi|118439846|gb|EAV46473.1| hypothetical protein MB2181_00330 [Methylophilales bacterium
           HTCC2181]
          Length = 197

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 25/218 (11%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLANIW 84
           +QL  +       +  + +V     + +  I+          + + G SGSGKS LA+  
Sbjct: 2   DQLLLNIHPVPKKTMGNFIVGK-NAECLNSIERLIKSTDHFFIYIWGESGSGKSHLASAL 60

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMT 143
            +K                        ++ED++  D +   +LF++ N   +  + L++T
Sbjct: 61  REK---------------------NVKVVEDVENFDNDQQIELFNLFNKSKKLRNKLVIT 99

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
               P    +  PDL SRL    V +I    D+  +  +      + +  D+K+ +Y + 
Sbjct: 100 GNDAPNKMNLR-PDLASRLSWELVYQIKPLTDEEKKVALEYYAMQKGMSFDRKIISYCMA 158

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++R L      +D +D  +L     IT  L  ++LK+
Sbjct: 159 NLKRDLPSLISTLDALDEWSLKAKRPITIPLLIQLLKK 196


>gi|320539564|ref|ZP_08039231.1| ATPase regulatory factor involved in DnaA inactivation [Serratia
           symbiotica str. Tucson]
 gi|320030417|gb|EFW12429.1| ATPase regulatory factor involved in DnaA inactivation [Serratia
           symbiotica str. Tucson]
          Length = 225

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 75/189 (39%), Gaps = 13/189 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
              +      G G+S L +    +      +  +  + K    +      ++    V ++
Sbjct: 35  GSYIYFWSREGGGRSHLLHAACAELSQHGEAVGYVPLDKRTYFMPEVLDGMEQLALVCID 94

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F++ N I +     L +T    P    + LPDL SRL    + K+
Sbjct: 95  NIEFIAGDEAWEMAIFNLYNRILETGHTRLFITGDRPPRQLNLYLPDLASRLDWGQIYKL 154

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+     +      R   + + +  ++++R++R +      ++++D+ +++    +
Sbjct: 155 QPLSDEEKLLALQLRGKLRGFELPEDVGRFLLKRLDREMRTLFMTLNQLDHASITAQRKL 214

Query: 231 TRSLAAEVL 239
           T     E L
Sbjct: 215 TIPFVKETL 223


>gi|239814473|ref|YP_002943383.1| DnaA regulatory inactivator Hda [Variovorax paradoxus S110]
 gi|239801050|gb|ACS18117.1| DnaA regulatory inactivator Hda [Variovorax paradoxus S110]
          Length = 233

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 78/228 (34%), Gaps = 14/228 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-------ILVGPSGSGKS 78
           +QL        G S D        E A+R +  W       V        L G  GSGK+
Sbjct: 7   KQLALDIGIATGPSFDAFFAGP-NEAALRHLQLWVGGAGSAVPHSPVPTYLWGEGGSGKT 65

Query: 79  CLAN----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHIINSI 133
            L         ++  S  + +          +    VLL+D+ L         F+   + 
Sbjct: 66  HLLESVRVALREQGASVGWLHAGVLEPPEFDERWGAVLLDDVHLYTAVQQHAAFNWFVNA 125

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
                 ++      P    +   DL +RL    V  + +  +     V+ +    R + +
Sbjct: 126 QTLQRGVVAAGALPPADLPLR-EDLRTRLGWGHVFHLQVLSESERRAVLRQAADTRGVML 184

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             ++  Y++ R  R L    +L+ ++D  AL     IT  L   +L+ 
Sbjct: 185 SDEVLDYMLHRFSRDLGSLMELLTQLDGYALQTQRAITIPLIRSMLEN 232


>gi|119899428|ref|YP_934641.1| DnaA regulatory inactivator Hda [Azoarcus sp. BH72]
 gi|119671841|emb|CAL95755.1| putative chromosomal replication initiator protein [Azoarcus sp.
           BH72]
          Length = 229

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCL 80
           +QL          S D+ +  +  E    L      +   + P+R + L G  GSG+S L
Sbjct: 2   KQLVLDIRPDAPPSLDNFVAGANAELLAALSLLGSAEQAAALPARHLYLWGARGSGRSHL 61

Query: 81  ANIWSDKSRSTR---FSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136
               +  +   R     + A   D++       V ++DID L D     LF+  N     
Sbjct: 62  LRAATAAAGGQRPVHLLDAATIGDTLPDTADALVAIDDIDQLGDAAQIALFNAFNRARTN 121

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
             +LL+     P+   +   DL +R+  + + ++   DDD    ++V +   R + +  +
Sbjct: 122 GQALLLAGPCAPLELTLR-EDLRTRIGQSLIYEVQSLDDDSRAAILVALAERRGLRLADE 180

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  ++++   R L     +++ +D  +L R   +T  L  E++++
Sbjct: 181 VIDFLLRHGRRDLPSLLAVLEALDAASLERKRAVTLPLLREMMQQ 225


>gi|304312877|ref|YP_003812475.1| DnaA family protein [gamma proteobacterium HdN1]
 gi|301798610|emb|CBL46840.1| DnaA family protein [gamma proteobacterium HdN1]
          Length = 230

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 14/228 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIW 84
            QL   F +      +D  V     Q V  +   P       +++ G +G+GK+ LAN  
Sbjct: 3   RQLSLDFGQPASGRFEDFFVGE-NAQVVERLRQLPCANIPAFLVVWGGTGAGKTHLANAL 61

Query: 85  S-----DKSRSTRFSNIAKSLDSILIDTRKPVLLE-------DIDLLDFNDTQLFHIINS 132
                  + R+       K+     +      +                 +  LFH+ N 
Sbjct: 62  CDAFSVAQRRAILIDGQQKAQLFPAMLDGLAAVDLVVVDDLDQFAGDAVWEEALFHLYNK 121

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           +    +SLL+T    P+     L DL SRL A    ++     +   + + +M   R   
Sbjct: 122 MVVSKASLLVTLSCPPMQAPFRLADLKSRLGACETYRVVPLSHEDKREWMRQMARLRSFE 181

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++ +   YI+ R  R      ++++ +D  +L+    ++     +V+K
Sbjct: 182 LEAEWCDYILNRAARDPASLVQIINTLDAESLAAKRMMSLPFIKQVMK 229


>gi|161525794|ref|YP_001580806.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC
           17616]
 gi|160343223|gb|ABX16309.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC
           17616]
          Length = 315

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 9/225 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSW---PSRVVILVGPSGSGKSCL 80
            QL          + D+ +     E   RL  +D   +    P R   + G  GSG+S L
Sbjct: 75  RQLTLDLGTPPPATFDNFITGENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRSHL 134

Query: 81  ANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +    +   +  +               ++D D + D     LF++ N +  +
Sbjct: 135 LQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVRAH 194

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            SS  + A            DL +RL    V  +S   D     V+     +R I +   
Sbjct: 195 PSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPLSDAGKIDVLRLAAKERGITLTDD 254

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 255 VAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 299


>gi|253989269|ref|YP_003040625.1| DNA replication initiation factor [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780719|emb|CAQ83881.1| dnaa-homolog protein hda [Photorhabdus asymbiotica]
          Length = 244

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 84/232 (36%), Gaps = 15/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCLA 81
           N   QL          +             +  I    +      +        G+S L 
Sbjct: 13  NTPSQLSLPLYLPDDETFASFFPGE-NATLLAAIKLAINQQHGSYIYFWSRESGGRSHLL 71

Query: 82  NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129
           +        K  +  +  + K    I      ++    V +++I+ +  ++     +F++
Sbjct: 72  HAACAELSLKDEAVGYVPLDKRAYFIPEVLDGMEHLSLVCIDNIECIAGDEEWEMAIFNL 131

Query: 130 INSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            N I +   + LL++    P    + LPDL SRL    + K+    DD   + +      
Sbjct: 132 YNRILEIGRTCLLISGDRPPRQIDLMLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAKL 191

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R   + + +  ++++R++R +      ++++D+ ++     +T     ++L 
Sbjct: 192 RGFELPEDVGRFLLKRLDREMRTLFMTLNQLDHASIVAQRKLTIPFVKDILH 243


>gi|237746881|ref|ZP_04577361.1| DnaA regulatory inactivator Hda [Oxalobacter formigenes HOxBLS]
 gi|229378232|gb|EEO28323.1| DnaA regulatory inactivator Hda [Oxalobacter formigenes HOxBLS]
          Length = 225

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 4/223 (1%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID--SWPSWPSRVVILVGPSGSGKSCLANI 83
           +QL  +       + +  +     E+A+ L+   +      R V L G +  GK+ L   
Sbjct: 2   QQLLLNLDTASPPALETFVPGQ-NEEALHLLHLIAARQSRDRFVYLWGDAAVGKTHLLLA 60

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLM 142
            +  + S   S  +              L++D D L        F + N + +   + ++
Sbjct: 61  MARFAPSRYLSARSPLAAFDYDSGISLYLIDDCDKLSPEKQIAAFDLFNQVRENGRACMI 120

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           TA +          DL SRL    V +I    D+     + +    R   +   +  Y++
Sbjct: 121 TAGSSTPLALTLRDDLKSRLCWGLVYQIKGLTDEEKIAALTEQAKSRGFTLSPGVLPYLI 180

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
              +R +     ++D +D  +L     IT  L  ++L + Q+ 
Sbjct: 181 THYQRDMHSLSMILDALDRYSLQTKRTITLPLLYDLLHKKQEP 223


>gi|257464853|ref|ZP_05629224.1| DNA replication initiation factor [Actinobacillus minor 202]
 gi|257450513|gb|EEV24556.1| DNA replication initiation factor [Actinobacillus minor 202]
          Length = 236

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 93/234 (39%), Gaps = 20/234 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL     +    + D+    ++      L  ++         + G    GKS L    S
Sbjct: 1   MQLLLPIYQVDDETFDNFYAENSPILLDSLQQNFSDVHQPFFYIWGGKSCGKSHLLKAVS 60

Query: 86  ------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDT---QLFHIINSI 133
                  +S S    + +     +++D       + L+DI  +  N+     +F + N I
Sbjct: 61  NYYLQNQRSSSYIPLSKSHYFSPMVLDNAAQLDVICLDDIQAIAGNEEWEVAIFDLFNQI 120

Query: 134 HQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            +        + + LL++A   P    + LPDL SRL    V  ++  +D+  +K++   
Sbjct: 121 REQQSLFGNGHKTLLLISADCPPHELKIKLPDLRSRLIWGEVYHLNHLNDEQKQKILKTS 180

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + I +  ++AA++++R+   L      ++++D  +L     +T     EVL
Sbjct: 181 AYQKGIDLPDEVAAFLLKRLGNDLQVLLTELERLDRASLQAQRNLTVPFVKEVL 234


>gi|254253159|ref|ZP_04946477.1| hypothetical protein BDAG_02411 [Burkholderia dolosa AUO158]
 gi|124895768|gb|EAY69648.1| hypothetical protein BDAG_02411 [Burkholderia dolosa AUO158]
          Length = 259

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 80/226 (35%), Gaps = 9/226 (3%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSW---PSRVVILVGPSGSGKSC 79
             QL          + ++ +     E   RL  +D   +    P R   + G  GSG+S 
Sbjct: 18  SRQLTLDLGTPPPATFENFITGENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRSH 77

Query: 80  LANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQ 135
           L       +    +   +  +               ++D D + D     LF++ N +  
Sbjct: 78  LLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDAQQVALFNLFNEVRA 137

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
           + SS  + A            DL +RL    V  +S P D     V+     +R I +  
Sbjct: 138 HPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIDVLKLAAKERGIALTD 197

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 198 DIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 243


>gi|325524974|gb|EGD02898.1| DnaA regulatory inactivator Hda [Burkholderia sp. TJI49]
          Length = 244

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 9/225 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSW---PSRVVILVGPSGSGKSCL 80
            QL          + D+ +     E   RL  +D   +    P R   + G  GSG+S L
Sbjct: 4   RQLTLDLGTPPPATFDNFITGENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRSHL 63

Query: 81  ANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +    +   +  +               ++D D + D     LF++ N +  +
Sbjct: 64  LQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVRAH 123

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            SS  + A            DL +RL    V  +S P D     V+     +R I +   
Sbjct: 124 PSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIDVLKLAAKERGIALTDD 183

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 184 IAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228


>gi|240949838|ref|ZP_04754164.1| DNA replication initiation factor [Actinobacillus minor NM305]
 gi|240295692|gb|EER46394.1| DNA replication initiation factor [Actinobacillus minor NM305]
          Length = 236

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 93/234 (39%), Gaps = 20/234 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL     +    + D+    ++      L  ++         + G    GKS L    S
Sbjct: 1   MQLLLPIYQVDDETFDNFYAENSPILLDSLQQNFSDVHQPFFYIWGGKSCGKSHLLKAVS 60

Query: 86  ------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDT---QLFHIINSI 133
                  +S S    + +     +++D       + L+DI  +  N+     +F + N I
Sbjct: 61  NYYLQNQRSSSYIPLSKSHYFSPMVLDNAAQLDVICLDDIQAIAGNEEWEVAIFDLFNQI 120

Query: 134 HQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            +        + + LL++A   P    + LPDL SRL    V  ++  +D+  +K++   
Sbjct: 121 REQQSLFGNGHKTLLLISADCPPHELKIKLPDLRSRLIWGEVYHLNHLNDEQKQKILKTS 180

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              + I +  ++AA++++R+   L      ++++D  +L     +T     EVL
Sbjct: 181 AYQKGIDLPDEVAAFLLKRLGSDLQVLLTELERLDRASLQAQRNLTVPFVKEVL 234


>gi|291613412|ref|YP_003523569.1| DnaA regulatory inactivator Hda [Sideroxydans lithotrophicus ES-1]
 gi|291583524|gb|ADE11182.1| DnaA regulatory inactivator Hda [Sideroxydans lithotrophicus ES-1]
          Length = 217

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 84/210 (40%), Gaps = 15/210 (7%)

Query: 41  DDLLVH------SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++ +V       SA+  A+           R++ + G +G GKS L    +  + ++  S
Sbjct: 14  ENFVVGRNVELLSALRHALAGTQG-----ERMLYVWGDAGGGKSHLLQASAGLALASGQS 68

Query: 95  NIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            I       + +  + V ++D++ LD      LF + N   +    LL+  R  P    +
Sbjct: 69  AICTC--GAVPEAAQVVAVDDVEKLDDEAQVALFALYNRQRENGGMLLVGGRQAPAFLSL 126

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
              DL +RL    V ++   +D    + + +    R   +  ++  Y+++   R L    
Sbjct: 127 R-EDLRTRLGWGLVYQVHALNDTEKAQALEQHAMARGFELTTEVTTYLLRHGRRDLPALL 185

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             +D +D L L      +  L  EV++  Q
Sbjct: 186 ATLDALDELCLRLKRAASVPLLKEVMRNDQ 215


>gi|237653423|ref|YP_002889737.1| DnaA regulatory inactivator Hda [Thauera sp. MZ1T]
 gi|237624670|gb|ACR01360.1| DnaA regulatory inactivator Hda [Thauera sp. MZ1T]
          Length = 230

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 92/227 (40%), Gaps = 13/227 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS------WPSRVVILVGPSGSGKSC 79
           +QL          + ++  V  A  + V  +    S       P+R + L G  GSG+S 
Sbjct: 2   KQLVLDIRPDAPPTLENF-VAGANAELVATVSLLASPATAEQLPARHIYLWGAPGSGRSH 60

Query: 80  LANIWSDKSRS----TRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134
           L     D +R+          A   D +       + ++D D L       LF+  N   
Sbjct: 61  LLRAAVDAARAAGRPAHLLAAATVEDHLPETPGALLAIDDADQLGAAAQIALFNAFNRAR 120

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
               SLL+     P+   +   DL +R+  + + ++   DDD   +++  + A R + + 
Sbjct: 121 ANGQSLLLCGPAAPLGLALR-EDLRTRIGQSLIYEVKPLDDDARAEILTTLAARRGLRLA 179

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++  ++++   R L    +++D +D  +L     IT  L  +++++
Sbjct: 180 DEVVDFLLRHGRRELSSLREVLDALDRASLEHKRPITLPLLRDMIQQ 226


>gi|189349485|ref|YP_001945113.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC
           17616]
 gi|189333507|dbj|BAG42577.1| similar to chromosomal replication initiator protein DnaA
           [Burkholderia multivorans ATCC 17616]
          Length = 244

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 9/225 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSW---PSRVVILVGPSGSGKSCL 80
            QL          + D+ +     E   RL  +D   +    P R   + G  GSG+S L
Sbjct: 4   RQLTLDLGTPPPATFDNFITGENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRSHL 63

Query: 81  ANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +    +   +  +               ++D D + D     LF++ N +  +
Sbjct: 64  LQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVRAH 123

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            SS  + A            DL +RL    V  +S   D     V+     +R I +   
Sbjct: 124 PSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPLSDAGKIDVLRLAAKERGITLTDD 183

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 184 VAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228


>gi|332526338|ref|ZP_08402464.1| regulatory inactivation of DnaA Hda protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332110474|gb|EGJ10797.1| regulatory inactivation of DnaA Hda protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 226

 Score =  144 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLV-HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL---- 80
           +Q+  +       + +  L    A  +A+  +   P  P+  V L GPSGSGK+ L    
Sbjct: 2   KQIPLAIGFDPLATFESFLPGSEANLRALEHLRRLPM-PTAPVYLWGPSGSGKTHLLRGL 60

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSS 139
           A+      +   + + ++     L      V+++  D L        F +          
Sbjct: 61  AHACQQAGQRVGWFDPSRPCPWELAADWSLVVIDRCDELDAAGQQSAFTLFVEAATEGVQ 120

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           +    R  PV   +   DL +RL    V  +    +      + +    R I +  ++  
Sbjct: 121 MACAGRLPPVDLPLR-DDLRTRLGWGPVFAMQPLGESETRAALRRESDRRGIRLTDEVMD 179

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +++ R  R L     L+D++D  +LSR   IT  L   +L E    
Sbjct: 180 HLLTRFPRDLKHLMALLDRLDEFSLSRSRTITVPLVRAMLAEEGDP 225


>gi|221200988|ref|ZP_03574028.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2M]
 gi|221206560|ref|ZP_03579573.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2]
 gi|221214417|ref|ZP_03587388.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD1]
 gi|221165674|gb|EED98149.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD1]
 gi|221173869|gb|EEE06303.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2]
 gi|221178838|gb|EEE11245.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2M]
          Length = 244

 Score =  144 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 9/225 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSW---PSRVVILVGPSGSGKSCL 80
            QL          + D+ +     E   RL  +D   +    P R   + G  GSG+S L
Sbjct: 4   RQLTLDLGTPPPATFDNFITGENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRSHL 63

Query: 81  ANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136
                  +    +   +  +               ++D D + D     LF++ N +  +
Sbjct: 64  LQALVSDASYGYARYLTPQSPLGAFAFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVRAH 123

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            SS  + A            DL +RL    V  +S   D    +V+     +R I +   
Sbjct: 124 PSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPLSDAGKIEVLRLAAKERGITLTDD 183

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +AAY++    R +     L+D +D  +L +   +T  L   +L  
Sbjct: 184 VAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228


>gi|254448991|ref|ZP_05062445.1| DnaA regulatory inactivator Hda [gamma proteobacterium HTCC5015]
 gi|198261385|gb|EDY85676.1| DnaA regulatory inactivator Hda [gamma proteobacterium HTCC5015]
          Length = 234

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 13/205 (6%)

Query: 49  IEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL--- 104
              A+ L   +  +   R   L G    GK+ L      ++     S     L  ++   
Sbjct: 28  NCLALELCQQAARNEGERQCFLYGDEAVGKTHLLQAACAEAALNGLSASFIPLREMVTYG 87

Query: 105 ------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                 ++ ++ V ++DI ++      +  +F +IN   + D+ LLM++     S    L
Sbjct: 88  CGVLQGLEQQQLVCIDDIHVIAGQAGWEEAVFDLINRCREQDTRLLMSSSIPASSHAFEL 147

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
            DL SRL    V+++     D   + +      R  FI ++   Y+     RS+ F    
Sbjct: 148 GDLRSRLAWGPVLQLHELQQDEKWQWLQARAEYRGFFISEESGQYLFAHYPRSMAFLNYA 207

Query: 216 VDKMDNLALSRGMGITRSLAAEVLK 240
           ++++D + L     +T  L  + L 
Sbjct: 208 LEELDRITLQTQRKVTVPLLKQELN 232


>gi|225023936|ref|ZP_03713128.1| hypothetical protein EIKCOROL_00802 [Eikenella corrodens ATCC
           23834]
 gi|224942961|gb|EEG24170.1| hypothetical protein EIKCOROL_00802 [Eikenella corrodens ATCC
           23834]
          Length = 219

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 12/211 (5%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL   FP     S D  L          L+          V + GP+G+GKS L   W+ 
Sbjct: 3   QLILDFPAAPP-SFDTFL-GQGNR---ELLQVLREQHEPFVYVWGPAGAGKSHLLQAWAA 57

Query: 87  KSR----STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQY-DSSL 140
           ++     S R+ N A      +      + L+ ID LD +   +LF+  N I Q    +L
Sbjct: 58  QAEAAGLSARYLNAANEPLHEMPPAGCHLALDQIDSLDADGQAELFNFCNHIRQSRQGAL 117

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L+ A   P    V   DL +R+    V +I    D+     +V+    RQI I   +  Y
Sbjct: 118 LIGASVPPPRLAVR-EDLRTRMGYCLVYEIKPLSDEEKIAALVEAARRRQIRISPDIFRY 176

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           ++    R +     ++D +D  AL+    IT
Sbjct: 177 LLHHWRRDIGSLMAMLDALDRHALASHRPIT 207


>gi|285018887|ref|YP_003376598.1| DNAa-homolog protein hda [Xanthomonas albilineans GPE PC73]
 gi|283474105|emb|CBA16606.1| putative dnaa-homolog protein hda [Xanthomonas albilineans]
          Length = 244

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 88/233 (37%), Gaps = 23/233 (9%)

Query: 27  QLFFSFPRCLGISRDDLLVHSA-----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           QL  +         D  L   A     ++     + S   W    V L G +G+GK+ LA
Sbjct: 5   QLPLALRYPPEQRLDRYLGAPAGMLAHLQAVAAGVAS--DW----VYLSGSTGTGKTHLA 58

Query: 82  NIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDF---NDTQLFHI 129
                 +     S     L +           ++ R  V L+ ++ +     ++  LF  
Sbjct: 59  LALCAAAEQAGRSAAYLPLQAATGRLPDALEALEGRHLVALDGLEAVAGQREDEVALFDF 118

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N       +LL TA   P    +CLPDL SRL   T + +   +D     V+ +    R
Sbjct: 119 HNRARSAGVTLLYTAHAMPDGLALCLPDLHSRLAQCTRIVLPPLEDADRAAVLRERAQRR 178

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            + ++     +++  + R L     L++++D  +L+    +T      VL+ +
Sbjct: 179 GLVLEDAAIDWLLTHVGRDLTGLIGLLERLDRESLAAQRRVTLPFLRRVLQRS 231


>gi|319792303|ref|YP_004153943.1| dnaa regulatory inactivator hda [Variovorax paradoxus EPS]
 gi|315594766|gb|ADU35832.1| DnaA regulatory inactivator Hda [Variovorax paradoxus EPS]
          Length = 233

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 14/228 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW------PSWPSRV-VILVGPSGSGKS 78
           +QL        G S D        E A+R +  W      P+  S V   L G  GSGK+
Sbjct: 7   KQLALDIGIATGPSFDAFFAGP-NEAALRHLQVWVGSAGSPALHSPVPTYLWGEGGSGKT 65

Query: 79  CLAN----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHIINSI 133
            L         ++  S  + +          +    VLL+D+ L         F+   + 
Sbjct: 66  HLLESVRVALREQGASVGWLHAGLLEPPEFDERWGAVLLDDVHLYTAVQQHAAFNWFVNA 125

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
                 ++      P    +   DL +RL    V  + +  +     V+ +    R + +
Sbjct: 126 QTLQRGVVAAGALPPADLPLR-EDLRTRLGWGHVFHLQVLSETERRAVLRQAADARGVML 184

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              +  +++ R  R L    +L+ ++D  AL     IT  L   +L+ 
Sbjct: 185 SDDVLDFMLHRFSRDLGSLMELLTQLDGYALQTQRAITIPLIRSMLEN 232


>gi|288941358|ref|YP_003443598.1| DnaA regulatory inactivator Hda [Allochromatium vinosum DSM 180]
 gi|288896730|gb|ADC62566.1| DnaA regulatory inactivator Hda [Allochromatium vinosum DSM 180]
          Length = 237

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 87/236 (36%), Gaps = 13/236 (5%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81
               QL          + +         + +  + +         ++L G SG+GK+ L 
Sbjct: 3   GPTPQLHLPLELRPEPTLESYRPGP-NAEVLDAVSALARGAGEPYLLLFGASGTGKTHLL 61

Query: 82  NIWSDKS-----RSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFN---DTQLFHII 130
                       ++         LD  +++  +    V ++DI  +  +   +  LF + 
Sbjct: 62  QASCQTVVRSGRQAHFVPLGMADLDPAMLENLEQMDLVAIDDIQCIVGDPAWERALFDLF 121

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N + +   SLL      P S    LPDL SRL      ++    D   E+++++    R 
Sbjct: 122 NRLREQGRSLLGATDAAPDSLPFSLPDLASRLLWGPRYRLLPLPDLDCEQLLLESARGRG 181

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + +  +L  +I+    R       L+ ++D+L+L      +  L   ++  ++  D
Sbjct: 182 MRLTPELVRFIMSHHARDPASLLDLLARLDSLSLREQRQPSIPLVRRIMLGSEDAD 237


>gi|149908827|ref|ZP_01897487.1| DNA replication initiation factor [Moritella sp. PE36]
 gi|149808101|gb|EDM68042.1| DNA replication initiation factor [Moritella sp. PE36]
          Length = 239

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 89/235 (37%), Gaps = 19/235 (8%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81
           N   QL        G +        A  Q +  + +         + L G   SG S L 
Sbjct: 4   NTPAQLSLPVQLPDGETFASFYPG-ANVQLLTALKNAAVGDGDPFIYLFGNRSSGTSHLL 62

Query: 82  NIW------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFN---DTQLFHI 129
           +        +D+S +     ++  +   ++D  +    V +++I+L+  N   +  LF+ 
Sbjct: 63  HATCTECSDADRSAAYLPMEMSSMMIPSVLDGMEHLDLVCIDNIELIAGNREWEVALFNF 122

Query: 130 INSIHQYD-----SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
            N            SL++T  +     G+ LPDL SRL      ++ L DDD     +  
Sbjct: 123 YNRWLDSHDKNTPGSLIVTGNSAARHLGIQLPDLLSRLDWGVSYQLQLLDDDGKLAALQL 182

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
               R + +   +A +++ R  R +      +D++D  ++S    +T     E L
Sbjct: 183 RAEFRGLKLPMDVARFLLNRSSRDMKTLIATLDRLDQASISAQRRLTIPFVKETL 237


>gi|71908793|ref|YP_286380.1| hypothetical protein Daro_3180 [Dechloromonas aromatica RCB]
 gi|71848414|gb|AAZ47910.1| regulatory inactivation of DnaA Hda protein [Dechloromonas
           aromatica RCB]
          Length = 230

 Score =  142 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 10/220 (4%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLA 81
              QL          + D+  V     + + L+  W +         L G +GSG+S L 
Sbjct: 13  PMRQLILDLLPESPPTLDNF-VAGGNAETLALLTEWLAGTRTDTSFCLWGEAGSGRSHLL 71

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSSL 140
                ++    + + A           + + ++ ++ LD      LF+  N +      L
Sbjct: 72  -----QASGFTYVDAALDPALKTAPAAEQLAVDHVEALDETGQIALFNHFNRLKMASGML 126

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           L  A   P    +   DL +RL +  + ++    D      +     +R + +  +L  Y
Sbjct: 127 LTAADQPPAHLALR-EDLRTRLGSGLICRLQPLSDAEKAAALGAQAKERALKLTPELIDY 185

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +++   R +     ++  +D   L +   +T  L  E+L 
Sbjct: 186 LMRHAPRDMRTLSTIIVALDEYTLEQKRPVTLPLLRELLN 225


>gi|120553881|ref|YP_958232.1| chromosomal replication initiator, DnaA [Marinobacter aquaeolei
           VT8]
 gi|120323730|gb|ABM18045.1| regulatory inactivation of DnaA Hda protein [Marinobacter aquaeolei
           VT8]
          Length = 232

 Score =  142 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLA 81
           K  Q+            D+         A + ++     PS   VV++ G S +GKS L 
Sbjct: 2   KASQMVLGVKLRDDARFDNFH-GDRNRSAAQWLELVCREPSGLPVVVICGDSDTGKSHLL 60

Query: 82  NIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHI 129
                +S     + +  S+  +L         +D+   + L+D++    +   +  +FH+
Sbjct: 61  QAICHESEQMGKTAVCISIVELLPFGPDALAGLDSHDVICLDDLEHAAADPGWEEAVFHL 120

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +   +  L+++    P S    L DL SRL    ++++ +  D+  +++++     R
Sbjct: 121 YNRVLDRNGLLVVSLSEVPASLPFGLADLGSRLAHGLLIQLGVYRDEDRQRILMARAEQR 180

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            + + + +A +I++R  R L     L+D +D  +L     +T      V+
Sbjct: 181 GLVMSEDVAGFIMRRAPRKLGDLLGLLDTLDENSLQAQRRLTIPFVKAVM 230


>gi|294339617|emb|CAZ87976.1| putative ATPase involved in DNA replication initiation [Thiomonas
           sp. 3As]
          Length = 250

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 16/234 (6%)

Query: 26  EQLFFSFPRCLGISRDDL--LVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLAN 82
            Q           S ++    V      A++ + D         + L G +GSGKS L  
Sbjct: 6   RQQILPLEWQDERSFENFDPGVQPENALALQALHDLLQQRRHNALYLWGETGSGKSHLLW 65

Query: 83  IWSDK-----------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHII 130
               +           +  T  S      D +       + ++D   L D+    LF + 
Sbjct: 66  AACRELQKQGRWALLLTPQTPASAWPDVTDLLAQHAGGLLAVDDAQQLSDWQQDWLFGLY 125

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N+    + + L      P +  +   DL +RL     +++  PDD     V+ ++  +R 
Sbjct: 126 NAARSAELAFLACGNAAPAALPLRT-DLRTRLSWGLALRLQAPDDAVRASVLQRLAQERG 184

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             +  +L  Y++  + R L     L+   D  AL+     T  L   +L    Q
Sbjct: 185 YSLSPELLHYMLTHLSRDLSQLGVLMAAFDRYALAAQRPATVPLLKSLLAAQPQ 238


>gi|145589943|ref|YP_001156540.1| chromosomal replication initiator, DnaA [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048349|gb|ABP34976.1| regulatory inactivation of DnaA Hda protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 251

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 29/244 (11%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPS---------RVVILVGP 72
            +Q           S D+ L    +        L  SW    S         R +   GP
Sbjct: 7   PKQFALDLSHSPKASLDNYLCSKDLALLSTLHALCKSWGDVASKQSTNPLNHRWIYWWGP 66

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTRKPVLLEDIDL 118
            GSG++ L +   + +++      + S                    ++   + ++D+D 
Sbjct: 67  EGSGRTHLLDAIDNAAQNAGIECFSLSPSEPTAWVRLEEKMSALAQAESPSVITVDDVDR 126

Query: 119 LDFNDT-QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           LD      LF I+N +    +  + M  +  P +  +   DL +RL    V +  L DD 
Sbjct: 127 LDERLVGALFRILNGVQASKNIHIFMAGKAAPANLELR-EDLRTRLGWGLVFQTQLLDDS 185

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
              + + +    R + +   +  +++ R  R +     L+D +D  +L     +T  L  
Sbjct: 186 EKIQALEQAAKARGLVLSPDVLPWLLNRFYRDMPNLMALIDALDAYSLETKRAVTLPLVR 245

Query: 237 EVLK 240
           E+L+
Sbjct: 246 ELLQ 249


>gi|74316240|ref|YP_313980.1| hypothetical protein Tbd_0222 [Thiobacillus denitrificans ATCC
           25259]
 gi|74055735|gb|AAZ96175.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 217

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 82/227 (36%), Gaps = 18/227 (7%)

Query: 26  EQLFFSF--PRCLGISRDDLLVHSA----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           +QL      P    +     +V        + A  +I+       R V + G  G+GK+ 
Sbjct: 2   QQLLLDVRPPARPDLGH--FVVGRNAELMNQLA-AMIEGAA--VERSVYVWGAPGTGKTY 56

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDS 138
           L   W+    +        ++D       + V+ + ++  D +     F   N + +   
Sbjct: 57  LLAAWARACEARGL-----TVDYGAQQPAQAVVADQLESWDADRQHTGFATFNRVREAGG 111

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
             L      P    V  P+L +RL    V +I   DD      +V         +D ++A
Sbjct: 112 LWLAAGSVPPAELPVT-PELRTRLGWGLVFQIHGLDDAEKRAALVHHAETLGFRLDTQVA 170

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            Y++    R +    ++++ +D L+L     IT  L  ++L    + 
Sbjct: 171 DYLLNHTSRDMQSLLRVLEALDRLSLETRRAITLPLLRQLLAAVPRS 217


>gi|329914127|ref|ZP_08276060.1| putative regulatory factor [Oxalobacteraceae bacterium IMCC9480]
 gi|327545193|gb|EGF30464.1| putative regulatory factor [Oxalobacteraceae bacterium IMCC9480]
          Length = 227

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 8/224 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----PSRVVILVGPSGSGKSCL 80
            Q+    P     + D+        + + L+            +R V   G +G+GKS L
Sbjct: 2   RQMLLDLPGEKPQNLDNF-EPGRNTELLALLSQHAYGDKLPLSARFVYCWGEAGAGKSHL 60

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSS 139
            +  +  + +      + +   I        LL+D D L        F + N I +Y  +
Sbjct: 61  LHALNTTASTRLIGPDSPAAAFIHSPDIGLYLLDDCDRLSDELQIAAFGLFNQIREYGGA 120

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           L+ +    P    +   DL +RL    + ++    DD     +      R   +   +  
Sbjct: 121 LISSGALPPARLDLR-EDLRTRLGWGLIYEVHGLTDDEKIAALTLAARTRGFALATGVLP 179

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           Y++    R +     ++D++D  +L     +T  L  E+L+   
Sbjct: 180 YLITHFRRDMRSLSAMLDELDQYSLETKRPVTLPLLRELLQRES 223


>gi|241767680|ref|ZP_04765313.1| DnaA regulatory inactivator Hda [Acidovorax delafieldii 2AN]
 gi|241361369|gb|EER57884.1| DnaA regulatory inactivator Hda [Acidovorax delafieldii 2AN]
          Length = 232

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 18/231 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW------PSWPSRV-VILVGPSGSGKS 78
           +QL        G +          E A++ +  W      P   S V   L G +GSGK+
Sbjct: 2   KQLALDIGLATGPTLARFFGGP-NEAALQHLRLWVGDGHQPGARSPVPTYLWGEAGSGKT 60

Query: 79  CLA----NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHII-NS 132
            L         D+  S  + + +        +    V+L+D+ L       + F+   N+
Sbjct: 61  HLLKAVRQALRDQGASVGWLDPSVGAPPEFDENWAAVILDDVHLYSTAQQAVAFNWFVNA 120

Query: 133 IHQYDSS---LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           I     +   +L      P    +   DL SRL    V ++ L D+     V+ +    R
Sbjct: 121 ISPASGTPRWVLAAGSLPPADLPLR-DDLRSRLGWGHVFQLQLLDETARRAVLRQEADAR 179

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +F+  ++  +++ R  R L    +L+D++D  AL     IT  L   +L+
Sbjct: 180 GVFLGDEVMDFMLNRFSRDLGSLMQLLDQLDAYALRTQRAITIPLLKAMLE 230


>gi|300690557|ref|YP_003751552.1| regulatory factor involved in inactivation of DnaA; probable ATPase
           [Ralstonia solanacearum PSI07]
 gi|299077617|emb|CBJ50252.1| regulatory factor involved in inactivation of DnaA; probable ATPase
           [Ralstonia solanacearum PSI07]
          Length = 233

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 15/229 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------SWPSWPSRVVILVGPSGSGKS 78
            +QL   F      +  +  V +  E+AV  +       +  S   R+V L G SGSG+S
Sbjct: 4   PQQLPLEFGATPAPTFGNF-VATGNEEAVLRLSGLVAQLAVGSAADRLVYLWGESGSGRS 62

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD-FNDTQLFHIINS 132
            L +    ++ +  F        + L             ++D + LD +     F+++N 
Sbjct: 63  HLLHAVCAQAEAAGFQARYLEAKAPLEAFEYDPAITIWAIDDAERLDEWAQVAAFNLVNE 122

Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +     + L+TA    P+S  +   DL +RL    V  +    D    + +++   +R +
Sbjct: 123 VRADPHAALITAGAAAPMSMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALLQAARERGM 181

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +   +  ++V    R +     L++ +D  +L+R   +T  L  ++L 
Sbjct: 182 QLSADVPQWLVTHSYRDMPSLMALLEALDTYSLARKRAVTLPLLRDMLA 230


>gi|30248129|ref|NP_840199.1| hypothetical protein NE0098 [Nitrosomonas europaea ATCC 19718]
 gi|30180014|emb|CAD84009.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 220

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 97/221 (43%), Gaps = 10/221 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLANI 83
           +QL          S D+ +  S  E+ +  + +  +     R   L G +GSGKS L   
Sbjct: 3   QQL-LDITEIGPPSLDNFI-SSGNEEVLYTLRNLVAGNQQDRFYYLWGKTGSGKSHLLQA 60

Query: 84  ----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDS 138
               +S++  ++R+ +  +  +         +++++++ LD     +LF++ N +     
Sbjct: 61  VADAFSEQQCNSRYIDCNQD-EPNFNPGTDCIVIDNVERLDDAAQIRLFNLYNHLRDNKH 119

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            + + + T P +      DL +RL    V ++    D+   +V+          +  ++ 
Sbjct: 120 GIFLASGTKPPAQLDLRQDLTTRLGWGLVYQVHELTDEKKIEVMQDYAIRCGFELPLEIC 179

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            Y+++  +R+L    +LV  +D L+L+R   IT  L  E+L
Sbjct: 180 HYLLKYEQRNLSSLIRLVHALDQLSLTRQRPITLPLLRELL 220


>gi|311104116|ref|YP_003976969.1| DnaA regulatory inactivator Hda [Achromobacter xylosoxidans A8]
 gi|310758805|gb|ADP14254.1| DnaA regulatory inactivator Hda [Achromobacter xylosoxidans A8]
          Length = 233

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 85/229 (37%), Gaps = 17/229 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL          S ++ +      +A+  + +    P R + + G +G G++ L    +
Sbjct: 3   RQLLLDVLPAPAPSLNNYIAGP-NGEALAAVRALI--PGRALYIWGAAGCGRTHLLRALT 59

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLL-DFNDTQLFHIINSIHQYD 137
            +  +              +            V ++D+  + D     LF + N   +  
Sbjct: 60  ARPDAVYIDAETGENMLRRLAEADSKSPMPKFVAVDDVHRMNDSRQAALFALYNRWRESA 119

Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           ++     L +     P+S  +   DL +RL    V ++    D      +    A+R + 
Sbjct: 120 ATGRAFALALAGDRAPLSMPLR-EDLRTRLGWDLVFRLDPLSDADKLAALSAQAAERGMH 178

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  ++  +++   ER +    +L+D +D  +L+ G  IT  L   +L +
Sbjct: 179 LAPEIINWMLTHHERDIRKLAELIDALDRYSLATGRPITLPLLRAMLAD 227


>gi|238021029|ref|ZP_04601455.1| hypothetical protein GCWU000324_00926 [Kingella oralis ATCC 51147]
 gi|237868009|gb|EEP69015.1| hypothetical protein GCWU000324_00926 [Kingella oralis ATCC 51147]
          Length = 223

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 13/224 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +Q  F F       R D L+ +A      LI        + + + G  GSGKS +   W 
Sbjct: 2   QQTAFDF-NDPAYPRFDKLLGTANA---ELIYILQQEHDQFLYIWGEQGSGKSHILQAWV 57

Query: 86  DKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDS- 138
            ++      +         L    +     V ++ I+ L+  +   LF+I N        
Sbjct: 58  GQALQNWQTAVYIDAGTTPLTDSAVQA-DFVAIDQIEKLNDAEQATLFYIFNHFRNSKHG 116

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            LL++A T P    +   DL +R+      ++     +     +  M   RQ+ ID  + 
Sbjct: 117 HLLLSADTPPSKLHLR-EDLRTRMAYCLAYEVKSLSREEKITALTNMAKTRQLNIDPGIY 175

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            Y++    + L     + + + N ++S+G  IT  L   +LK+ 
Sbjct: 176 QYLLDHWRQDLGSLITMFNDLANYSISQGKPITLPLLRRLLKQQ 219


>gi|198275620|ref|ZP_03208151.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135]
 gi|198271249|gb|EDY95519.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135]
          Length = 471

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 98/263 (37%), Gaps = 31/263 (11%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
                +  +  +    Q     P      + ++ +  ++ E +  + ++    P+R    
Sbjct: 112 VYNGNKTPNPLQAPAPQ-DLD-PHLNPNYNFENFIKGNSNEFSRTVAETVAQNPARTFNP 169

Query: 67  VILVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILI 105
           + + GPSG GK+ L                     A+++  +   +  +N          
Sbjct: 170 LFIYGPSGVGKTHLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF-ISFY 228

Query: 106 DTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
            T   ++++DI             FHI N +HQ    L++T+   PV        L +R 
Sbjct: 229 QTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERLLTRF 288

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K   V ++  PD +  + ++        + I + + +YI + +  S+   E +V+ +   
Sbjct: 289 KWGLVAELEKPDIELRKNILRNKIKRDGLTIPESVISYIAESVNESVRELEGIVNSLLAQ 348

Query: 223 ALSRGMGITRSLAAEVLKETQQC 245
           ++     I   LA  ++++  +C
Sbjct: 349 SILFKREIDLDLAQRIVRKAVKC 371


>gi|91789418|ref|YP_550370.1| chromosomal replication initiator DnaA [Polaromonas sp. JS666]
 gi|91698643|gb|ABE45472.1| Chromosomal replication initiator, DnaA [Polaromonas sp. JS666]
          Length = 228

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 77/228 (33%), Gaps = 14/228 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           +Q+          S  +       E A++ ++ W     R      L G   SGK+ L  
Sbjct: 2   KQIALDIGLASAPSFANFFGGP-NEAALKHLELWAGNTLRSPVPTYLWGEPASGKTHLLR 60

Query: 83  IWSDKSRSTRFS----NIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHII----NSI 133
             S+  R         +          ++   V+L+D  L         F+      NS 
Sbjct: 61  AVSEALREQGAPVGWMDAFVLEPPEFSESWAAVILDDCHLYTAVQQQAAFNWFVNALNSA 120

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
                 +L      P    +   DL +RL    V  +    +     V+ +    R +F+
Sbjct: 121 DGRPRWVLAAGLVPPADLALR-EDLRTRLGWGHVFALQALTEAERRAVLRREADARGVFL 179

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                 +++ R  R L    +L+D++D+ AL     IT  L   +L+ 
Sbjct: 180 GDDAMDFMLTRFSRDLASLMQLLDQLDSYALQTKRAITIPLIKSMLEN 227


>gi|124268206|ref|YP_001022210.1| regulatory inactivation of DnaA Hda protein [Methylibium
           petroleiphilum PM1]
 gi|124260981|gb|ABM95975.1| regulatory inactivation of DnaA Hda protein [Methylibium
           petroleiphilum PM1]
          Length = 226

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 8/222 (3%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL          S ++  V +       +  +  S P+  + L GP+G+GKS L    +
Sbjct: 2   KQLPLQLGPGPAQSFENFAVGANAAAVGAVRAASAS-PTP-LYLWGPAGAGKSHLLRALA 59

Query: 86  DKS--RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSSL 140
            ++  +  R      SL++     +    VLL+  D          F +      +   +
Sbjct: 60  REAAVQGRRVGAFGPSLETPWTWGEGVDLVLLDGCDDFDAARQHAAFALFVEAATHRVPV 119

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           +   R  PV   V   DL +RL    V ++    +  +   + +    R I +   +  Y
Sbjct: 120 VAAGRLPPVDLPVR-EDLRTRLGWGPVFQLLPLAEAEMRVTLQREAGRRGIALSDDVTGY 178

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ R  R L     L+D +D  ALS    +T  L   +L E 
Sbjct: 179 LLTRFARDLGSLMALLDALDEFALSEQRAVTVPLLKRMLAEQ 220


>gi|253997589|ref|YP_003049653.1| DnaA regulatory inactivator Hda [Methylotenera mobilis JLW8]
 gi|253984268|gb|ACT49126.1| DnaA regulatory inactivator Hda [Methylotenera mobilis JLW8]
          Length = 218

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 28/231 (12%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGK 77
           K+  +QL          S D+ +      +A+    + +       +R + L G  GSGK
Sbjct: 9   KSPTKQLLLDIQPLPPPSLDNFIEGQ-NAEALFSLKQALTHAEE--ARFIYLWGAQGSGK 65

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIH 134
           S L       +R +                  P+ + D D    ++     LF   N + 
Sbjct: 66  SHLLQACERMARQSNL----------------PLFIAD-DTHTLDEAAQIALFDQFNQLR 108

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
                L+ +    P+   +   DL +RL    V ++    D+   + +     +R + + 
Sbjct: 109 SSGGILISSGIAAPMQMNLR-DDLATRLAWGLVYQLHPLTDEEKAQALRTHATERGMKLP 167

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            ++  Y ++ + R L     ++D +D  +L+    +T  +  ++L+   Q 
Sbjct: 168 DEVVEYCLRYLRRDLPTLMAVLDALDVWSLTEKKPVTVPMLKKLLQHNLQA 218


>gi|296135511|ref|YP_003642753.1| Sigma 54 interacting domain protein [Thiomonas intermedia K12]
 gi|295795633|gb|ADG30423.1| Sigma 54 interacting domain protein [Thiomonas intermedia K12]
          Length = 250

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 16/234 (6%)

Query: 26  EQLFFSFPRCLGISRDDL--LVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLAN 82
            Q           S ++    V      A++ + D         + L G +GSGKS L  
Sbjct: 6   RQQILPLEWQDERSFENFDPGVQPENALALQALHDLLQQRRHNALYLWGETGSGKSHLLW 65

Query: 83  IWSDKSR-----------STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHII 130
               + +            T  S      D +       + ++D   L D+    LF + 
Sbjct: 66  AACRELQKQGRWALLLNPQTPASAWPDVTDLLAQQAGGLLAVDDAQQLSDWQQDWLFGLY 125

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N+    + + L      P +  +   DL +RL     +++  PDD    +V+ ++  +R 
Sbjct: 126 NAARSAELAFLACGNAAPAALSLRT-DLRTRLSWGLALRLQAPDDAVRARVLQRLAHERG 184

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             +  +L  Y++  + R L     L+   D  AL+     T  L   +L    Q
Sbjct: 185 YSLSPELLHYMLTHLSRDLSQLGVLMAAFDRYALAAQRPATVPLLKSLLAAQPQ 238


>gi|332993251|gb|AEF03306.1| chromosomal replication initiator DnaA like protein [Alteromonas
           sp. SN2]
          Length = 251

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 94/246 (38%), Gaps = 34/246 (13%)

Query: 25  EEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLID-------SWPSWPS---------RV 66
             QL      P        D  V +  ++ V L+        +W   PS          +
Sbjct: 6   AMQLTLPVTLPTDETF---DSFVDTGNQEVVALLKGIPSAMPAWQDAPSLASLSALHLPL 62

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDID 117
           V L+G  G GKS L      +      +++  +L+            ++    + L++I 
Sbjct: 63  VTLLGGQGLGKSHLLYALCHQLAQQNVNHLYLNLNHHAQWSFDIFDGLENLSVICLDNIH 122

Query: 118 LLDFN---DTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLP 173
            +  +   +  LF + N + +   +L++ +    P      LPDL SRL    +  ++  
Sbjct: 123 AIAGHARWEEALFDLFNRVIENPHALIVGSSQHGPSHPAFQLPDLSSRLAWGVIYHLTAL 182

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           +D+  ++V+      R + + ++   +++   +R L     L+ ++D  +L     ++ +
Sbjct: 183 NDESRKEVVRLRANQRGLRLSEQALQFLLHHSDRDLRSLLNLLARLDTRSLQEQKKLSVA 242

Query: 234 LAAEVL 239
           +    L
Sbjct: 243 MVKREL 248


>gi|149927692|ref|ZP_01915944.1| hypothetical protein LMED105_15843 [Limnobacter sp. MED105]
 gi|149823518|gb|EDM82748.1| hypothetical protein LMED105_15843 [Limnobacter sp. MED105]
          Length = 250

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS--WPSRVVILVGPSGSGKSCLA 81
             +QL          +  + L+     Q V  +    +    S  V + GPSG GKS L 
Sbjct: 19  PMQQLLLDVFTPPRPTLSNFLIGQ-NGQLVHELRELINMKGTSPFVYIYGPSGCGKSHLL 77

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSS- 139
              + +      + +      +   T + +++++ID L  ++  QLF+  NS    +   
Sbjct: 78  RGVASQLG---VNVLEGGNRFVFRPTEQALVIDNIDRLTPYSQVQLFNAFNSSMAENKPG 134

Query: 140 -LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            +++      +   +   DL +R++A   +++    D    + +      R + + +++ 
Sbjct: 135 KIVLAGELPTIELKLR-DDLRTRIEAGLCLRVQPLSDQEKHEALQATAQSRGLQLSEEVI 193

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            Y ++  +R +     ++D +D  +L +   ++ +L    +K  +
Sbjct: 194 EYALRYFQRDMGSLMAVMDGLDRFSLEQQKPVSVNLLRHWMKRRE 238


>gi|83748966|ref|ZP_00945975.1| DnaA-related protein [Ralstonia solanacearum UW551]
 gi|207721703|ref|YP_002252142.1| cog0593, atpase involved in dna replication initiation protein
           [Ralstonia solanacearum MolK2]
 gi|207744195|ref|YP_002260587.1| cog0593, atpase involved in dna replication initiation protein
           [Ralstonia solanacearum IPO1609]
 gi|83724389|gb|EAP71558.1| DnaA-related protein [Ralstonia solanacearum UW551]
 gi|206586865|emb|CAQ17450.1| cog0593, atpase involved in dna replication initiation protein
           [Ralstonia solanacearum MolK2]
 gi|206595600|emb|CAQ62527.1| cog0593, atpase involved in dna replication initiation protein
           [Ralstonia solanacearum IPO1609]
          Length = 233

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 15/229 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW------PSWPSRVVILVGPSGSGKS 78
            +QL   F      + D+  V +  E+AV  +              R+V L G SGSG+S
Sbjct: 4   PQQLPLEFGATPAPTIDNF-VATGNEEAVLRLSGLIAELAHGRAADRLVYLWGESGSGRS 62

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD-FNDTQLFHIINS 132
            L +    ++ +  F        + L             ++D + LD +     F+++N 
Sbjct: 63  HLLHAVCAQAEAAGFQARYLEAKAPLEAFEYDPAITIWAIDDAERLDEWAQVAAFNLVNE 122

Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +     + L+TA    P+S  +   DL +RL    V  +    D    + +++   +R +
Sbjct: 123 VRADPHAALITAGAAAPMSMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALLQAAHERGM 181

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +   +  ++V    R +     L++ +D  +L+R   +T  L  ++L 
Sbjct: 182 QLSADVPQWLVTHSYRDMPSLMALLEALDTYSLARKRAVTLPLLRDMLA 230


>gi|294775360|ref|ZP_06740882.1| chromosomal replication initiator protein DnaA [Bacteroides
           vulgatus PC510]
 gi|319642816|ref|ZP_07997454.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           3_1_40A]
 gi|294450817|gb|EFG19295.1| chromosomal replication initiator protein DnaA [Bacteroides
           vulgatus PC510]
 gi|317385560|gb|EFV66501.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           3_1_40A]
          Length = 468

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 94/267 (35%), Gaps = 38/267 (14%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
            + D  K   P           P      + ++ +  ++ E +  + ++    P++    
Sbjct: 108 VIRDGNKAPNPMQAPAPQDLD-PHLNPNYNFENFIKGNSNEFSRTVGETVAKNPAKTFNP 166

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR------------------ 108
           + L GPSG GK+ L N        TR   +      + +                     
Sbjct: 167 LFLYGPSGVGKTHLTNAI-----GTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF 221

Query: 109 -------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                    ++++DI             FHI N +HQ    L++T+   PV        L
Sbjct: 222 ISFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERL 281

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            +R K   V ++  PD +  + ++        + I + +  YI + +  S+   E +++ 
Sbjct: 282 LTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRELEGIINS 341

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQC 245
           +   ++     +   LA  ++++  +C
Sbjct: 342 LLAQSIIFKRDVDLDLAERIVRKAVRC 368


>gi|212691082|ref|ZP_03299210.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855]
 gi|237712418|ref|ZP_04542899.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           9_1_42FAA]
 gi|237726609|ref|ZP_04557090.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D4]
 gi|265752120|ref|ZP_06087913.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           3_1_33FAA]
 gi|212666314|gb|EEB26886.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855]
 gi|229435135|gb|EEO45212.1| chromosomal replication initiator protein DnaA [Bacteroides dorei
           5_1_36/D4]
 gi|229453739|gb|EEO59460.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           9_1_42FAA]
 gi|263236912|gb|EEZ22382.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           3_1_33FAA]
          Length = 471

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 94/267 (35%), Gaps = 38/267 (14%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
            + D  K   P           P      + ++ +  ++ E +  + ++    P++    
Sbjct: 111 VIRDGNKAPNPMQAPAPQDLD-PHLNPNYNFENFIKGNSNEFSRTVGETVAKNPAKTFNP 169

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR------------------ 108
           + L GPSG GK+ L N        TR   +      + +                     
Sbjct: 170 LFLYGPSGVGKTHLTNAI-----GTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF 224

Query: 109 -------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                    ++++DI             FHI N +HQ    L++T+   PV        L
Sbjct: 225 ISFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERL 284

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            +R K   V ++  PD +  + ++        + I + +  YI + +  S+   E +++ 
Sbjct: 285 LTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRELEGIINS 344

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQC 245
           +   ++     +   LA  ++++  +C
Sbjct: 345 LLAQSIIFKRDVDLDLAERIVRKAVRC 371


>gi|150002609|ref|YP_001297353.1| chromosomal replication initiation protein [Bacteroides vulgatus
           ATCC 8482]
 gi|254881428|ref|ZP_05254138.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           4_3_47FAA]
 gi|149931033|gb|ABR37731.1| chromosomal replication initiator protein DnaA [Bacteroides
           vulgatus ATCC 8482]
 gi|254834221|gb|EET14530.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           4_3_47FAA]
          Length = 471

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 94/267 (35%), Gaps = 38/267 (14%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
            + D  K   P           P      + ++ +  ++ E +  + ++    P++    
Sbjct: 111 VIRDGNKAPNPMQAPAPQDLD-PHLNPNYNFENFIKGNSNEFSRTVGETVAKNPAKTFNP 169

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR------------------ 108
           + L GPSG GK+ L N        TR   +      + +                     
Sbjct: 170 LFLYGPSGVGKTHLTNAI-----GTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF 224

Query: 109 -------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                    ++++DI             FHI N +HQ    L++T+   PV        L
Sbjct: 225 ISFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERL 284

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            +R K   V ++  PD +  + ++        + I + +  YI + +  S+   E +++ 
Sbjct: 285 LTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRELEGIINS 344

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQC 245
           +   ++     +   LA  ++++  +C
Sbjct: 345 LLAQSIIFKRDVDLDLAERIVRKAVRC 371


>gi|300703165|ref|YP_003744767.1| regulatory factor involved in inactivation of dnaa; ATPase
           [Ralstonia solanacearum CFBP2957]
 gi|299070828|emb|CBJ42125.1| regulatory factor involved in inactivation of DnaA; probable ATPase
           [Ralstonia solanacearum CFBP2957]
          Length = 233

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW------PSWPSRVVILVGPSGSGKS 78
            +QL   F      + D+  V +  E+AV  +              R+V L G SGSG+S
Sbjct: 4   PQQLPLEFGATPAPTIDNF-VATGNEEAVLRLSGLIAELAHGRAADRLVYLWGESGSGRS 62

Query: 79  CLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINS 132
            L +    ++     ++      A               ++D + LD +     F+++N 
Sbjct: 63  HLLHAVCAQAESAGFQARYLEAKAPLEAFEYDPAITIWAIDDAERLDEWAQVAAFNLVNE 122

Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +     + L+TA    P+S  +   DL +RL    V  +    D    + +++   +R +
Sbjct: 123 VRADPHAALITAGAAAPMSMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALLQAAHERGM 181

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +   +  ++V    R +     L++ +D  +L+R   +T  L  ++L 
Sbjct: 182 QLSVDVPQWLVTHSYRDMPSLMALLEALDTYSLARKRAVTLPLLRDMLA 230


>gi|85059708|ref|YP_455410.1| DNA replication initiation factor [Sodalis glossinidius str.
           'morsitans']
 gi|84780228|dbj|BAE75005.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 229

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 74/190 (38%), Gaps = 13/190 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114
              +      G G+S L +       +   +     LD            ++    V ++
Sbjct: 39  GSYLYFWSRKGGGRSHLLHAACAALSARAKAVGYVPLDKRTWFVPEVLEGMEQLALVTMD 98

Query: 115 DIDLLDFN---DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  +   +  +F++ N I +     L+++    P    + LPDL SRL    + ++
Sbjct: 99  NIECIVGDLPWEMAIFNLYNRIQETGRTRLIISGNCPPRQLNLSLPDLASRLDWGQIYRL 158

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               D+     +      R   + + ++ ++++R+ER +      +D++D+ ++     +
Sbjct: 159 QPLSDEEKGYALQMRAKLRGFELPEDVSRFLLKRLERDMRTLSATLDQLDHASIRAQRKL 218

Query: 231 TRSLAAEVLK 240
           T      +L 
Sbjct: 219 TIPFVKAILN 228


>gi|332141572|ref|YP_004427310.1| Chromosomal replication initiator, DnaA like protein to DnaA
           protein Hda [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551594|gb|AEA98312.1| Chromosomal replication initiator, DnaA like protein to DnaA
           protein Hda [Alteromonas macleodii str. 'Deep ecotype']
          Length = 245

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 94/246 (38%), Gaps = 34/246 (13%)

Query: 26  EQLFFS--FPRCLGISRDDLLVHSAIEQAVRLI----DSWPSWPS------------RVV 67
            QL      P        D  V+   E+ V ++    ++ P W               +V
Sbjct: 1   MQLPLPITLPVDENF---DSFVNKGNEEVVSILRQIAEALPYWREAPALGPLSSLQLPLV 57

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLEDIDL 118
            L+G S  GKS L      +      S++  +L+            ++    + L++I  
Sbjct: 58  TLLGNSAIGKSHLLFATCHQLAGKSVSHLYLNLNDYQAWSLDIFEGLENLSLIALDNIHA 117

Query: 119 LDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +  N   +  LF + N + +   +L++ T+   P +    LPDL SRL    +  ++  D
Sbjct: 118 IAGNVQWEEALFDLFNRVIETKRALIICTSHLGPSNPAFTLPDLRSRLAWGVIYHVNQLD 177

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           D   E+ +     +R + +  +   +++   ER L     L+ ++D  +L     ++ ++
Sbjct: 178 DGGREEAVRLRAEERGLTLSNQALQFLLHHSERDLKSLMSLLARLDARSLQEQKRLSVAM 237

Query: 235 AAEVLK 240
               L 
Sbjct: 238 VKRELN 243


>gi|332528516|ref|ZP_08404504.1| chromosomal replication initiator DnaA [Hylemonella gracilis ATCC
           19624]
 gi|332042027|gb|EGI78365.1| chromosomal replication initiator DnaA [Hylemonella gracilis ATCC
           19624]
          Length = 231

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 17/232 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV----------ILVGPSGS 75
           +Q+        G +  + L     E  +  + +W                   L GP+GS
Sbjct: 2   KQIALDIRVADGPTFANFLPGP-NEVVLSHLRAWAESADGTEGARAGAPVPDYLWGPAGS 60

Query: 76  GKSCLANIW----SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHII 130
           GK+ L          +     + +          +    VL++D+ L       + F+  
Sbjct: 61  GKTHLLKAAREALQARGAGVGWLDAGMEEAPPFDEAWSAVLMDDVHLYTAGLQHVAFNWF 120

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
                   ++L      PV   +   DL +RL    V  + L  +  L  V+      R 
Sbjct: 121 VHAQASRMAVLAAGDAPPVGLTLR-EDLRTRLGWGHVHGLQLLGEAELRAVLRGAAQWRG 179

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + + +++  +++ R  R L    +L++++D  AL     IT  L   +L+ET
Sbjct: 180 LSLGEEVTDFMLTRFSRDLGSLMELLNQLDGYALRAQRPITIPLLKAMLEET 231


>gi|17547344|ref|NP_520746.1| hypothetical protein RSc2625 [Ralstonia solanacearum GMI1000]
 gi|17429647|emb|CAD16332.1| putative cog0593, atpase involved in dna replication initiation
           protein [Ralstonia solanacearum GMI1000]
          Length = 233

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 15/229 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------SWPSWPSRVVILVGPSGSGKS 78
            +QL   F      +  +  V +  E+AV  +       +      R+V L G SGSG+S
Sbjct: 4   PQQLPLEFGATPAPTIGNF-VATGNEEAVLRLSGLVAELAVGRAADRLVYLWGESGSGRS 62

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD-FNDTQLFHIINS 132
            L +    ++ +  F        + L             ++D + LD +     F+++N 
Sbjct: 63  HLLHAVCAQAEAAGFQARYLEAKAPLEAFEYDPAITIWAIDDAERLDEWAQVAAFNLVNE 122

Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +     + L+TA    P+S  +   DL +RL    V  +    D    + +++   +R +
Sbjct: 123 VRADPHAALITAGAAAPMSMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALLQAARERGM 181

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +   +  ++V    R +     L++ +D  +L+R   +T  L  ++L 
Sbjct: 182 QLSADVPQWLVTHSYRDMPSLMALLEALDTYSLARKRAVTLPLLRDMLA 230


>gi|299065815|emb|CBJ36993.1| regulatory factor involved in inactivation of DnaA; probable ATPase
           [Ralstonia solanacearum CMR15]
          Length = 233

 Score =  137 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 15/229 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------SWPSWPSRVVILVGPSGSGKS 78
            +QL   F      +  +  V +  E+AV  +       +      R+V L G SGSG+S
Sbjct: 4   PQQLPLEFGATPAPTIGNF-VATGNEEAVLRLSGLIAELAVGRAADRLVYLWGESGSGRS 62

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD-FNDTQLFHIINS 132
            L +    ++ +  F        + L             ++D + LD +     F+++N 
Sbjct: 63  HLLHAVCAQAEAAGFQARYLEAKAPLEAFEYDPAITIWAIDDAERLDEWAQVAAFNLVNE 122

Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +     + L+TA    P+S  +   DL +RL    V  +    D    + +++   +R +
Sbjct: 123 VRADPHAALITAGAAAPMSMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALLQAARERGM 181

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +   +  ++V    R +     L++ +D  +L+R   +T  L  ++L 
Sbjct: 182 QLSADVPQWLVTHSYRDMPSLMALLEALDTYSLARKRAVTLPLLRDMLA 230


>gi|254481391|ref|ZP_05094636.1| DnaA regulatory inactivator Hda [marine gamma proteobacterium
           HTCC2148]
 gi|214038554|gb|EEB79216.1| DnaA regulatory inactivator Hda [marine gamma proteobacterium
           HTCC2148]
          Length = 232

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 26  EQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           +QL          +  + L   +  A+ Q V+ + +       VV L G  GSGKS L  
Sbjct: 6   QQLPLLVQLRDDATLKNFLPFPLSEALLQGVKALCAGEG--DSVVFLHGNRGSGKSHLLQ 63

Query: 83  IWSDKSRSTRFSNIAKSLDSIL-------IDTRKPVLLEDIDLLDFNDT---QLFHIINS 132
                +         + L           ++T   V L+D+D +  ++     LF + N 
Sbjct: 64  AACHLAGEQALYLPLRELQVYPPEEVLAGVETLGLVALDDLDAVLGDEAWELALFDLYNR 123

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
             ++   LL+ A   P    V L DL SRL    V ++    D+  + ++    + R + 
Sbjct: 124 SKEWGCRLLIAASGAPRVLDVSLADLRSRLSWGVVYQLPSVSDEEKQAILQFRASRRGLA 183

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +  ++A +IV R+ R L    +L+DK+D  +L +   ++     +VL
Sbjct: 184 LPDEVAVFIVNRVPRDLERLLELLDKLDRASLVQKRALSIPFVKQVL 230


>gi|238798723|ref|ZP_04642195.1| DnaA-homolog protein hda [Yersinia mollaretii ATCC 43969]
 gi|238717419|gb|EEQ09263.1| DnaA-homolog protein hda [Yersinia mollaretii ATCC 43969]
          Length = 148

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 62/139 (44%), Gaps = 4/139 (2%)

Query: 106 DTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSR 161
           +    V +++I+ +  ++     +F++ N I +     LL+T    P    + LPDL SR
Sbjct: 9   EQLALVCIDNIECIAGDEQWEMAMFNLYNRIVETGRTRLLITGDRPPRQLNLGLPDLASR 68

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           L    + K+    DD   + +      R   + + +  ++++R++R +      ++++D 
Sbjct: 69  LDWGQIYKLQPLSDDEKLQALQLRAKLRGFELPEDVGRFLLKRLDREMRTLFTTLNQLDR 128

Query: 222 LALSRGMGITRSLAAEVLK 240
            +++    +T     E L 
Sbjct: 129 ASITAQRKLTIPFVKETLN 147


>gi|289811495|ref|ZP_06542124.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 153

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 63/136 (46%), Gaps = 4/136 (2%)

Query: 109 KPVLLEDIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKA 164
             V +++I+ +  ++     +F + N I +     LL+T    P    + LPDL SRL  
Sbjct: 17  SLVCIDNIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDW 76

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             + K+    D+   + +      R   + + +  ++++R++R +      +D++D+ ++
Sbjct: 77  GQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASI 136

Query: 225 SRGMGITRSLAAEVLK 240
           +    +T     E+LK
Sbjct: 137 TAQRKLTIPFVKEILK 152


>gi|329893747|ref|ZP_08269835.1| Chromosomal replication initiator, DnaA [gamma proteobacterium
           IMCC3088]
 gi|328923470|gb|EGG30784.1| Chromosomal replication initiator, DnaA [gamma proteobacterium
           IMCC3088]
          Length = 237

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 88/228 (38%), Gaps = 15/228 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN--I 83
            QL  +     G + D+ + +         ++   S     + L G   +GK+ L +  +
Sbjct: 6   RQLTLNVQLPDGFTFDNFVFNENRLLVREQLEGADS-----IWLTGAYSTGKTHLLSALV 60

Query: 84  WSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQ 135
            ++   +                   ++    ++ +DID L         LFH+ N  H 
Sbjct: 61  CANDQTALYLPADELIASCDPTMLDGLEATDCLVFDDIDKLAHTPAWSEALFHLFNRHHA 120

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
                + +++  P      L DL SR       +++  +D    K+  +    R I +++
Sbjct: 121 QGGRWVCSSQVAPRYVDTPLADLRSRFTLFPAFELANYNDQERVKIFSERARFRGIKVNE 180

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            +  YI   + R L +  +L+D++D  +L+    +T  L   VL++ +
Sbjct: 181 DVYPYITNHLPRDLKYWLQLLDQLDQASLAEQRKVTIPLVKSVLQQNE 228


>gi|212710884|ref|ZP_03319012.1| hypothetical protein PROVALCAL_01952 [Providencia alcalifaciens DSM
           30120]
 gi|212686581|gb|EEB46109.1| hypothetical protein PROVALCAL_01952 [Providencia alcalifaciens DSM
           30120]
          Length = 155

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSS-LLMTA 144
           R+    ++ + ++ + +     V +++I  +  ++     +F++ N I +   + LL+T 
Sbjct: 4   RAYFVPDVLEGMEHLSL-----VCIDNIQCIAGDEEWEMAIFNLYNRILEIGRTCLLITG 58

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P    + LPDL SRL    + K+    D+     +    + R   + + +  ++++R
Sbjct: 59  DRPPRQIDLKLPDLASRLDWGQIYKLHPLSDEDKICALQLRASIRGFELPEDVCRFVLKR 118

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++R +     +++K+D+ ++     +T     ++LK
Sbjct: 119 LDRKMGTLFDILNKLDHASIVAQRKMTIPFVKDILK 154


>gi|160897629|ref|YP_001563211.1| DnaA regulatory inactivator Hda [Delftia acidovorans SPH-1]
 gi|160363213|gb|ABX34826.1| DnaA regulatory inactivator Hda [Delftia acidovorans SPH-1]
          Length = 235

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 83/231 (35%), Gaps = 18/231 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW------PSWPSRV-VILVGPSGSGKS 78
           +QL          +     V       +  +  W       +  + V   L G SGSGK+
Sbjct: 5   KQLALDISMASSPTLSRFFVGP-NAAVIDHLRHWVGDGRMQTARTPVPTYLWGESGSGKT 63

Query: 79  CLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHII-NS 132
            L         ++     + + +        +    VL++D+D+       + F+   N+
Sbjct: 64  HLLKAVREALREQGAMVGWMDASTLFPPPFDERWAAVLMDDVDIYTPLQQARAFNWFVNA 123

Query: 133 ---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
                     +L      P    +   DL +RL    V ++ L D+     V+ +    R
Sbjct: 124 TSPATGSPRWVLGAGPLPPADLKLR-EDLRTRLGWGHVFQLQLLDETARRAVLRQEADAR 182

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +F+   +  Y+++R  R L    +L+D +D  AL     IT  L   +L+
Sbjct: 183 GVFLGDDVMDYMLKRFSRDLGSLMQLLDMLDGFALRNKRAITIPLLKTMLE 233


>gi|121608736|ref|YP_996543.1| chromosomal replication initiator DnaA [Verminephrobacter eiseniae
           EF01-2]
 gi|121553376|gb|ABM57525.1| Chromosomal replication initiator, DnaA [Verminephrobacter eiseniae
           EF01-2]
          Length = 307

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 87/236 (36%), Gaps = 20/236 (8%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV--------ILVGPSG 74
           ++ +QL          + D          A++ +        R           L G  G
Sbjct: 74  SRMKQLVLDIGLATVPTLDRFFAGP-NGAALQHL-RLALGAGRHAATRSPVPSYLWGEPG 131

Query: 75  SGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHI 129
           SGK+ L         ++  S  + + A S      +    V+L+D+   D     L F+ 
Sbjct: 132 SGKTHLLQAVCQSLREQGASVGWLDPALSAPPDFDENWTAVVLDDVQSYDSARQALAFNW 191

Query: 130 I-NS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             N+          +L      P    +   DL SRL    V ++ L  +     V+ + 
Sbjct: 192 FVNAISPASGAQRWVLAAGSLPPADLPLR-EDLRSRLGWGHVFQLQLLGEAERRSVLRQE 250

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              R +F+  ++  Y+++R  R L    +L++++D  ALS    IT  L   +L++
Sbjct: 251 ADARGVFLGDEVMDYMLRRFARDLGSLMQLLERLDAFALSTRRAITIPLLKTMLEQ 306


>gi|121595308|ref|YP_987204.1| chromosomal replication initiator DnaA [Acidovorax sp. JS42]
 gi|222111592|ref|YP_002553856.1| dnaa regulatory inactivator hda [Acidovorax ebreus TPSY]
 gi|120607388|gb|ABM43128.1| Chromosomal replication initiator, DnaA [Acidovorax sp. JS42]
 gi|221731036|gb|ACM33856.1| DnaA regulatory inactivator Hda [Acidovorax ebreus TPSY]
          Length = 230

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 18/230 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------SWPSWPSRVVILVGPSGSGKSC 79
           +QL        G + D+        QA++ +       + P  P     L G +G+GKS 
Sbjct: 2   KQLALDIGLVTGPTLDNFHAGP-NAQALQHLRLAVAGGAAPRSPVPT-YLWGETGTGKSH 59

Query: 80  LANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFH----II 130
           L          +  S  + + + +L S   +    VLL+++ L         F+     I
Sbjct: 60  LLRATYEALRGQGASVGWLDASVALPSAFDERWSAVLLDEVHLYTTAQQAAAFNWFVNAI 119

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N        +L      P    +   DL +RL    V ++ L D+     V+ +    R 
Sbjct: 120 NPTEGAPRWVLAAGDLPPADLPLR-DDLRTRLGWGHVFQLQLLDEQERRAVLRQQADARG 178

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           IF+  ++  Y++ R  R L    +L+D++D+ AL     +T  L   +L+
Sbjct: 179 IFLADEVMNYMLGRFSRDLGSLMQLLDRLDSFALRTQRAVTVPLLKTMLE 228


>gi|56479468|ref|YP_161057.1| DnaA regulatory inactivator Hda [Aromatoleum aromaticum EbN1]
 gi|56315511|emb|CAI10156.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 223

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 10/221 (4%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLANIW 84
           +QL          + D+ +V  + ++ V  +D+    P +  + L GP GSG+S L    
Sbjct: 2   KQLVLDIRPDAPPTLDNFVVG-SNDELVAALDA--IGPRAAHLYLWGPPGSGRSHLLRAA 58

Query: 85  SDK----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSS 139
             +     R   +   A++ D +       + ++D++ L       LF+  N       +
Sbjct: 59  VARAHVAGRPALYVPAAEAGDELPQTGGALLAVDDVEALDAAAQVALFNAFNRARGNGQT 118

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LL+     P+   V   DL +R+    V ++   DD+    ++  +   R + +  ++  
Sbjct: 119 LLLAGAAAPLQLAVR-EDLRTRVGQCLVYEVRPLDDEARAAILRTLAERRGLPLADEVTD 177

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++++   R L     ++D +D  +L R   +T  L  E++ 
Sbjct: 178 FLLRHGRRDLPSLLAVLDALDTASLERKRAVTLPLLREMIH 218


>gi|319762113|ref|YP_004126050.1| dnaa regulatory inactivator hda [Alicycliphilus denitrificans BC]
 gi|330826056|ref|YP_004389359.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans K601]
 gi|317116674|gb|ADU99162.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans BC]
 gi|329311428|gb|AEB85843.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans K601]
          Length = 235

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 18/234 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-------VVILVGPSGS 75
           +   QL          +          E A++ +       S         V L G +GS
Sbjct: 2   SPMRQLALDIGLAPVPTLARFFAGP-NEAALQHLRLAVEGASGGALRSCLPVYLWGEAGS 60

Query: 76  GKSCLANIWSD--KSRSTRFSNIAKSLDSILI--DTRKPVLLEDIDLLD-FNDTQLFHII 130
           GK+ L     +  +++  R   +  S ++     +    VLL+++ L         F+  
Sbjct: 61  GKTHLLKAVQEALRTQGVRVGWMQASTENPPAFDEDWAAVLLDEVHLYSTGQQAAAFNWF 120

Query: 131 -NS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            N+          +L      P    +   DL SRL    V ++ L D+     V+ +  
Sbjct: 121 VNATSPATGAPRWVLAAGDLPPADLPLR-DDLRSRLGWGHVFQLHLLDEPARRAVLRQEA 179

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             R +F+  ++  Y+++R  R L    +L+D++D+ AL     IT  L   +L+
Sbjct: 180 DARGVFLGDEVMDYMLKRFSRDLGSLVQLLDRLDSFALRTQRAITIPLLKTMLE 233


>gi|238783847|ref|ZP_04627865.1| DnaA-homolog protein hda [Yersinia bercovieri ATCC 43970]
 gi|238715234|gb|EEQ07228.1| DnaA-homolog protein hda [Yersinia bercovieri ATCC 43970]
          Length = 145

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 106 DTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSR 161
           +    V +++I+ +  ++     +F++ N I +     LL+T    P    + LPDL SR
Sbjct: 6   EQLALVCIDNIECIAGDEQWEMAMFNLYNRIVETGRTRLLITGDRPPRQLNLGLPDLASR 65

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           L    + K+    DD   + +      R   + + +  ++++R++R +      +D++D 
Sbjct: 66  LDWGQIYKLQPLSDDEKLQALQLRAKLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDR 125

Query: 222 LALSRGMGITRSLAAEVL 239
            +++    +T     ++L
Sbjct: 126 ASITAQRKLTIPFVKDIL 143


>gi|297537444|ref|YP_003673213.1| DnaA regulatory inactivator Hda [Methylotenera sp. 301]
 gi|297256791|gb|ADI28636.1| DnaA regulatory inactivator Hda [Methylotenera sp. 301]
          Length = 201

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 78/193 (40%), Gaps = 25/193 (12%)

Query: 44  LVHSAIEQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
            +    ++A+  +++  S    S+ + L G +GSGKS L +                   
Sbjct: 19  FIAGRNDEALASLNAVASNSAQSKFIYLWGEAGSGKSHLLSAC----------------- 61

Query: 102 SILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
               +     +++++ LL+ +    LF+I N + +   +L+      P   G+   DL +
Sbjct: 62  ----EAIGMQVVDNVHLLNNDAQIDLFNIYNQLKESGGTLITAGLHAPTQMGLR-DDLAT 116

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           RL    V ++   +D      +    A+R I +  ++  Y ++ + R L      +D +D
Sbjct: 117 RLAWGLVYQLHPLNDAEKALALQNHAAERGIRLPTEVVDYCLRYLRRDLSTLMATLDALD 176

Query: 221 NLALSRGMGITRS 233
             +L+    +T  
Sbjct: 177 EWSLTTKKPVTVP 189


>gi|33598142|ref|NP_885785.1| hypothetical protein BPP3626 [Bordetella parapertussis 12822]
 gi|33566700|emb|CAE38910.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 248

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 17/231 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL          + ++ +      QA+    +  +   R + L GP+G G++ L    S
Sbjct: 18  RQLLLDVLPAPAPTLNNYIAGP-NGQALAAAHALTA--GRAIYLWGPAGCGRTHLLRGLS 74

Query: 86  DKSRSTRFSNI--AKSLDSILIDTRKP-----VLLEDIDLLD-FNDTQLFHIINSIHQYD 137
            +  +        A+SL  +            V ++D+  +D      LF + N   +  
Sbjct: 75  ARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESA 134

Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           ++     L ++    P+S  +   DL +RL    V ++    D      +    A+R + 
Sbjct: 135 ATGRAFALAVSGDRAPMSLPLR-EDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQ 193

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +  ++  +++   ER +     L+D +D  +L+ G  IT  L   +L +  
Sbjct: 194 LAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITTPLLRAMLADPH 244


>gi|33603035|ref|NP_890595.1| hypothetical protein BB4061 [Bordetella bronchiseptica RB50]
 gi|33568666|emb|CAE34424.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 233

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 17/231 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL          + ++ +      QA+    +  +   R + L GP+G G++ L    S
Sbjct: 3   RQLLLDVLPAPAPTLNNYIAGP-NGQALAAAHALTA--GRAIYLWGPAGCGRTHLLRGLS 59

Query: 86  DKSRSTRFSNI--AKSLDSILIDTRKP-----VLLEDIDLLD-FNDTQLFHIINSIHQYD 137
            +  +        A+SL  +            V ++D+  +D      LF + N   +  
Sbjct: 60  ARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESA 119

Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           ++     L ++    P+S  +   DL +RL    V ++    D      +    A+R + 
Sbjct: 120 ATGRAFALAVSGDRAPMSLPLR-EDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQ 178

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +  ++  +++   ER +     L+D +D  +L+ G  IT  L   +L +  
Sbjct: 179 LAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPH 229


>gi|121605884|ref|YP_983213.1| chromosomal replication initiator DnaA [Polaromonas
           naphthalenivorans CJ2]
 gi|120594853|gb|ABM38292.1| Chromosomal replication initiator, DnaA [Polaromonas
           naphthalenivorans CJ2]
          Length = 235

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 80/227 (35%), Gaps = 14/227 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--SRV-VILVGPSGSGKSCLAN 82
           +QL          S  +       +  VR +  W   P  S V   L G   SGK+ L  
Sbjct: 9   KQLALDIGLASDPSFANFFAGP-NDATVRQLALWAQSPLDSPVPTYLWGDEASGKTHLLK 67

Query: 83  IWSDKSRSTRFS----NIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHII-NSIHQY 136
              +  R    S    + +        ++   V+++D  L         F+   N++   
Sbjct: 68  AVGEALRHQGASSGWMDASMLEPPEFNESWSAVIMDDCHLYTPAQQRSAFNWFVNALSTD 127

Query: 137 DSS---LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
           D     ++      P    +   DL +RL    V  +    DD    VI +    R   +
Sbjct: 128 DGHPRWVVAAGNVPPADLPLR-EDLRTRLGWGNVFALQALSDDERRAVIKREADARGFSL 186

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             ++  +++    R L    +L+DK+D+ AL     IT  L   +L+
Sbjct: 187 SDEVTDFMLTHFSRDLGSLMQLLDKLDSYALQTKRAITIPLIKTMLE 233


>gi|326789140|ref|YP_004306961.1| chromosomal replication initiator protein DnaA [Clostridium
           lentocellum DSM 5427]
 gi|326539904|gb|ADZ81763.1| chromosomal replication initiator protein DnaA [Clostridium
           lentocellum DSM 5427]
          Length = 446

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 109/280 (38%), Gaps = 34/280 (12%)

Query: 1   MNLMKEDYS--FFVPDKQKNDQPK--NKEEQL--FFSFPRC--LGISRDDLLVHSAIEQA 52
           + ++ +DY+  F +P++Q   + K   + EQL    + P         D  +V ++   A
Sbjct: 68  LQVLNKDYNIKFMLPNEQTTTEQKAAKRNEQLQDPLNNPSNLNPRYVFDSFVVGNSNRMA 127

Query: 53  VRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSIL 104
                 +   P+     + L G  G GK+ L +  +         +      ++   + L
Sbjct: 128 HAAALAVSEAPARAYNPLFLYGGVGLGKTHLMHSIAHYILDQNPSAKIIYASSEKFTNEL 187

Query: 105 IDTRK---------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTART 146
           I++ +                +L++DI  +   +    + FH  N++++ +  +++++  
Sbjct: 188 INSIRDDKNESFRNKYRNIDVLLIDDIQFITGKERTQEEFFHTFNALYEANKQIIISSDR 247

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P         L SR +   +  I  PD +    ++ K      + + + +  +I + + 
Sbjct: 248 PPKEIETLEERLRSRFEWGLIADIQSPDLETRIAILRKKAEIESLSVPEDVLLFIAKTVI 307

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            ++   E  ++++   +      IT  LA E LK+    D
Sbjct: 308 SNIRELEGALNRILAFSSLTNKPITVELANEALKDLISKD 347


>gi|89901288|ref|YP_523759.1| chromosomal replication initiator DnaA [Rhodoferax ferrireducens
           T118]
 gi|89346025|gb|ABD70228.1| Chromosomal replication initiator, DnaA [Rhodoferax ferrireducens
           T118]
          Length = 228

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 14/229 (6%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-------ILVGPSGSGKS 78
           +Q+        G +          E A+R +  W +  +             G +GSGK+
Sbjct: 2   KQIALDIGLATGPTLSSFFAGP-NEAALRHLQIWVAGGANAAARSPVPTYFFGSAGSGKT 60

Query: 79  CLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF-NDTQLFHIINSI 133
            L       + ++  S  + + +        +    VL++D+   +       F+   + 
Sbjct: 61  HLLKAVQEAFREQGASVGWLDASVQQPPEFDERWAAVLMDDVHFYNVVQQQAAFNWFINA 120

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
             +   +L      P    +   DL +RL    V ++ L  +     V+ +    R +F+
Sbjct: 121 QTWQRGVLAAGELPPADLKLR-DDLRTRLGWGHVFQLQLLSEPERRAVLRQAADARGLFL 179

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++  +++ R  R L    +L++ +D  AL     IT  L   ++  T
Sbjct: 180 SDEVMDFMLTRFSRDLGNLMELLNLIDGYALQTKRAITIPLIKSMMDNT 228


>gi|33591482|ref|NP_879126.1| hypothetical protein BP0241 [Bordetella pertussis Tohama I]
 gi|33571124|emb|CAE40621.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332380929|gb|AEE65776.1| DnaA regulatory inactivator Hda [Bordetella pertussis CS]
          Length = 233

 Score =  134 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 17/231 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL          + ++ +      QA+    +  +   R + L GP+G G++ L    S
Sbjct: 3   RQLLLDVLPAPAPALNNYIAGP-NGQALAAAHALTA--GRAIYLWGPAGCGRTHLLRGLS 59

Query: 86  DKSRSTRFSNI--AKSLDSILIDTRKP-----VLLEDIDLLD-FNDTQLFHIINSIHQYD 137
            +  +        A+SL  +            V ++D+  +D      LF + N   +  
Sbjct: 60  ARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESA 119

Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           ++     L ++    P+S  +   DL +RL    V ++    D      +    A+R + 
Sbjct: 120 ATGRAFALAVSGDRAPMSLPLR-EDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQ 178

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +  ++  +++   ER +     L+D +D  +L+ G  IT  L   +L +  
Sbjct: 179 LAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPH 229


>gi|221065684|ref|ZP_03541789.1| DnaA regulatory inactivator Hda [Comamonas testosteroni KF-1]
 gi|264679763|ref|YP_003279672.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni
           CNB-2]
 gi|220710707|gb|EED66075.1| DnaA regulatory inactivator Hda [Comamonas testosteroni KF-1]
 gi|262210278|gb|ACY34376.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni
           CNB-2]
          Length = 235

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 24/234 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----------PSRVVILVGPSG 74
           +QL        G +     V         LID    W           P     L G +G
Sbjct: 5   KQLALDISMAPGPTLARFFVGP-NA---ALIDHLRHWVGDGQLQQSRTPVPT-YLWGEAG 59

Query: 75  SGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHI 129
           SGKS L         ++     + + +        +    VL++D+D+   F   + F+ 
Sbjct: 60  SGKSHLLKAVREALREQGAMVGWMDASTPFPPEFDERWAAVLMDDVDIYTPFQQARAFNW 119

Query: 130 INSIHQYDSSL---LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
             +     + L   ++ A   PV+      DL +RL    V ++ L D+     V+ +  
Sbjct: 120 FVNATSPATGLPRWVLAAGQLPVADLKMREDLRTRLGWGHVYQLHLLDESARRAVLRQEA 179

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             R +F+  ++  Y+++R  R L    +L+D +D  AL     IT  L   +L+
Sbjct: 180 DARGVFLSDEVMDYMLRRFSRDLGSLMQLLDMLDGFALRNKRAITIPLLKTMLE 233


>gi|329297548|ref|ZP_08254884.1| DNA replication initiation factor [Plautia stali symbiont]
          Length = 175

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127
           + +    +  +   +     LD            ++    V +++I+ +      +  +F
Sbjct: 1   MLHAACAEMSARGEAVGYVPLDKRTWFVPEVLEGMENLALVCIDNIECIAGEAEWEMVIF 60

Query: 128 HIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            + N I +     LL+T    P    + LPDL SRL    + ++    D+   + +    
Sbjct: 61  DLYNRILETGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYRLQPLSDEDKLQAMQLRA 120

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             R   + + +  ++++R++R +      +D++D  ++S    +T     E L
Sbjct: 121 GLRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDRASISAQRKLTIPFVKEAL 173


>gi|299533943|ref|ZP_07047304.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni
           S44]
 gi|298718070|gb|EFI59066.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni
           S44]
          Length = 232

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 24/234 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----------PSRVVILVGPSG 74
           +QL        G +     V         LID    W           P     L G +G
Sbjct: 2   KQLALDISMAPGPTLARFFVGP-NA---ALIDHLRHWVGDGQLQQSRTPVPT-YLWGEAG 56

Query: 75  SGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHI 129
           SGKS L         ++     + + +        +    VL++D+D+   F   + F+ 
Sbjct: 57  SGKSHLLKAVREALREQGAMVGWMDASTPFPPEFDERWAAVLMDDVDIYTPFQQARAFNW 116

Query: 130 INSIHQYDSSL---LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
             +     + L   ++ A   PV+      DL +RL    V ++ L D+     V+ +  
Sbjct: 117 FVNATSPATGLPRWVLAAGQLPVADLKMREDLRTRLGWGHVYQLHLLDESARRAVLRQEA 176

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             R +F+  ++  Y+++R  R L    +L+D +D  AL     IT  L   +L+
Sbjct: 177 DARGVFLSDEVMDYMLRRFSRDLGSLMQLLDMLDGFALRNKRAITIPLLKTMLE 230


>gi|255016564|ref|ZP_05288690.1| chromosomal replication initiation protein [Bacteroides sp. 2_1_7]
 gi|256842198|ref|ZP_05547702.1| chromosomal replication initiator protein DnaA [Parabacteroides sp.
           D13]
 gi|256736082|gb|EEU49412.1| chromosomal replication initiator protein DnaA [Parabacteroides sp.
           D13]
          Length = 471

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 97/263 (36%), Gaps = 37/263 (14%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VI 68
           P+      P++ + QL          + D+    ++ +      ++    P +     + 
Sbjct: 120 PNPFMTTAPQDLDPQL------NPKYNFDNYFEGTSNKLVRTAGEAVAQNPGKTTFNPLF 173

Query: 69  LVGPSGSGKSCLANIWSDK----------------------SRSTRFSNIAKSLDSILID 106
           + GPSG GK+ L +    +                      + + R +     L+     
Sbjct: 174 IFGPSGVGKTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLN--FYQ 231

Query: 107 TRKPVLLEDI-DLLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +LL+DI +L+  +      FHI N +HQ    L++T+   PV        L +RLK
Sbjct: 232 NIDVLLLDDIQELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERLITRLK 291

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                ++S PD D  +K++        I I  ++  +I   +  ++   E ++  +   A
Sbjct: 292 WGLTAELSRPDLDLRKKILKNKINHDGIMIPDEVFNFIANNVTENVRDLEGILVSLMANA 351

Query: 224 LSRGMGITRSLAAEVLKETQQCD 246
           +     I   L   V+ +  + +
Sbjct: 352 VINNREIDLPLTKRVVSQAVRLE 374


>gi|150006675|ref|YP_001301418.1| chromosomal replication initiation protein [Parabacteroides
           distasonis ATCC 8503]
 gi|262384875|ref|ZP_06078007.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_33B]
 gi|298377645|ref|ZP_06987596.1| ATPase [Bacteroides sp. 3_1_19]
 gi|301308943|ref|ZP_07214888.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           20_3]
 gi|149935099|gb|ABR41796.1| chromosomal replication initiator protein DnaA [Parabacteroides
           distasonis ATCC 8503]
 gi|262293591|gb|EEY81527.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_33B]
 gi|298265348|gb|EFI07010.1| ATPase [Bacteroides sp. 3_1_19]
 gi|300832969|gb|EFK63594.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           20_3]
          Length = 465

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 97/263 (36%), Gaps = 37/263 (14%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VI 68
           P+      P++ + QL          + D+    ++ +      ++    P +     + 
Sbjct: 114 PNPFMTTAPQDLDPQL------NPKYNFDNYFEGTSNKLVRTAGEAVAQNPGKTTFNPLF 167

Query: 69  LVGPSGSGKSCLANIWSDK----------------------SRSTRFSNIAKSLDSILID 106
           + GPSG GK+ L +    +                      + + R +     L+     
Sbjct: 168 IFGPSGVGKTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLN--FYQ 225

Query: 107 TRKPVLLEDI-DLLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +LL+DI +L+  +      FHI N +HQ    L++T+   PV        L +RLK
Sbjct: 226 NIDVLLLDDIQELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERLITRLK 285

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                ++S PD D  +K++        I I  ++  +I   +  ++   E ++  +   A
Sbjct: 286 WGLTAELSRPDLDLRKKILKNKINHDGIMIPDEVFNFIANNVTENVRDLEGILVSLMANA 345

Query: 224 LSRGMGITRSLAAEVLKETQQCD 246
           +     I   L   V+ +  + +
Sbjct: 346 VINNREIDLPLTKRVVSQAVRLE 368


>gi|221134619|ref|ZP_03560922.1| Chromosomal replication initiator, DnaA like protein to DnaA
           protein Hda [Glaciecola sp. HTCC2999]
          Length = 246

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 32/246 (13%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAI--EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
            QL          + D  +    +  + A+  I++  S  + ++++ G   SGK+ LA  
Sbjct: 1   MQLPLPLALPSKQTLDSFIFEDNLLLKDALLQINTLSS-KNALLMVHGAHHSGKTHLATA 59

Query: 84  WSDKSRSTRFSNIAKSLDSILI--------------------------DTRKPVLLEDID 117
               + S   S     L  +                            +    ++++++ 
Sbjct: 60  AYQHAISQSISAYYLDLSLLFAPEILTAYQASSDIHSETLMSDMLAGYEAHALLVVDNMH 119

Query: 118 LLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           ++  N   +  LF +IN   +   ++++T+   P     CLPDL SRL    V  I    
Sbjct: 120 VVAGNKDLEIALFDLINRCIESACAMVLTSALGPAHHDFCLPDLRSRLTWGQVYHIHPLT 179

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           DD L + +      + + +     +Y+++   R     ++++D++D ++LS    IT  L
Sbjct: 180 DDGLLQAVTSYVQTKGLNMQMNAISYLLKFSTRDFSSIQRVIDELDKVSLSHQQAITIPL 239

Query: 235 AAEVLK 240
             +VL 
Sbjct: 240 IKKVLH 245


>gi|313199997|ref|YP_004038655.1| sigma 54 interacting domain-containing protein [Methylovorus sp.
           MP688]
 gi|312439313|gb|ADQ83419.1| Sigma 54 interacting domain protein [Methylovorus sp. MP688]
          Length = 204

 Score =  132 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 20/209 (9%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANI 83
           +QL          S D+ +      +A+  + +        R + L G +GSGKS L + 
Sbjct: 2   KQLLLDIQPSALPSLDNFVPG-RNAEALHSLRAALEGQSAQRFIYLWGETGSGKSHLLHA 60

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLM 142
            +    +                    +  +D+ LL   +   LF   N +   +  L+ 
Sbjct: 61  CNRAGEALGVHV---------------ICADDVHLLSNEEQIALFDSYNHLRDSEGVLVA 105

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
                P +  +   DL +RL      ++    D+     + +  A R + +  ++  Y +
Sbjct: 106 AGIAAPTAMQLR-DDLATRLAWGLSYQLHPLSDEEKALALRQHAAARGMRLPDEVLDYCL 164

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           + + R L      +D +D  +LS    +T
Sbjct: 165 RHLRRDLPTLVSTLDALDEWSLSYKRPVT 193


>gi|171464072|ref|YP_001798185.1| Chromosomal replication initiator DnaA [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193610|gb|ACB44571.1| Chromosomal replication initiator DnaA [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 251

 Score =  132 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 29/244 (11%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS------------RVVILVGP 72
            +Q           S ++ L    +     L +   SW +            R +   GP
Sbjct: 7   PKQFALDISHSPKASLENYLPGKDLALVSVLQEIKRSWATSNSTSASNPLNRRWIYWWGP 66

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDL 118
            GSG++ L     + ++      +A +        R                + ++D+D 
Sbjct: 67  QGSGRTHLLEAIGNAAKHAGLERVALTPSEPASWIRLEENISTLAQTHIPSIITVDDVDQ 126

Query: 119 LDFNDTQ-LFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           LD      LF I+N++    +  + M     PV+  +   DL +RL    V +  L DDD
Sbjct: 127 LDDRLVGSLFRILNAVQASKAIHIFMAGTAAPVNLKLR-EDLRTRLGWGLVFQTQLLDDD 185

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
              + + +    R + +   +  +++    R +     L+D +D  +L     +T  L  
Sbjct: 186 EKIQALGEAAKARGLVLSPDVLPWLLSCFYRDMPSLMALIDALDAYSLETKRAVTLPLVR 245

Query: 237 EVLK 240
           E+L+
Sbjct: 246 ELLQ 249


>gi|213420310|ref|ZP_03353376.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 176

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 71/170 (41%), Gaps = 13/170 (7%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
           S  + L    G+G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 7   SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 66

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F + N I +     LL+T    P    + LPDL SRL    + K+
Sbjct: 67  NIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 126

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
               D+   + +      R   + + +  ++++R++R +      +D++D
Sbjct: 127 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD 176


>gi|197286950|ref|YP_002152822.1| chromosomal replication initiator protein [Proteus mirabilis
           HI4320]
 gi|227354809|ref|ZP_03839226.1| DNA-directed DNA replication initiator protein [Proteus mirabilis
           ATCC 29906]
 gi|118708|sp|P22837|DNAA_PROMI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735833|sp|B4F0U5|DNAA_PROMH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|150878|gb|AAA83958.1| dnaA [Proteus mirabilis]
 gi|194684437|emb|CAR46152.1| chromosomal replication initiator protein [Proteus mirabilis
           HI4320]
 gi|227165127|gb|EEI49958.1| DNA-directed DNA replication initiator protein [Proteus mirabilis
           ATCC 29906]
          Length = 466

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 97/250 (38%), Gaps = 26/250 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75
           +QP+++  +L +          D+ +   + + A          P      + L G +G 
Sbjct: 116 NQPQSQLPELNYRSNVNPKHKFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 175

Query: 76  GKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND 123
           GK+ L +     I   K+ +      ++     ++   +   +ED       +D L  +D
Sbjct: 176 GKTHLLHAVGNSIMERKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDD 235

Query: 124 -----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
                       + FH  N++ + +  +++T+  +P         L SR      V I  
Sbjct: 236 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 295

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+ +    +++K   + QI +  ++A +I +R+  ++   E  ++++   A   G  IT 
Sbjct: 296 PELETRVAILMKKADENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 355

Query: 233 SLAAEVLKET 242
               E L++ 
Sbjct: 356 DFVREALRDL 365


>gi|293603554|ref|ZP_06685975.1| DnaA regulatory inactivator Hda [Achromobacter piechaudii ATCC
           43553]
 gi|292817990|gb|EFF77050.1| DnaA regulatory inactivator Hda [Achromobacter piechaudii ATCC
           43553]
          Length = 233

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 17/229 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL          S ++ +      +A+  + +    P R + + G +G G++ L    +
Sbjct: 3   RQLLLDVLPAPAPSLNNYIAGP-NGEALAAVRALN--PGRALYIWGAAGCGRTHLLRALT 59

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLD-FNDTQLFHIINSIHQYD 137
            +  +              +            V ++D+  +D      LF + N   +  
Sbjct: 60  ARPDAVFIDPAKGETMLRRLAEADSKSPMPKFVAVDDVHRMDDSRQAALFALYNRWRESA 119

Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           ++     L +     P+S  +   DL +RL    V ++    D      +    A+R + 
Sbjct: 120 ATGRAFALALAGDRAPLSMPLR-EDLRTRLGWDLVFRLDPLSDADKLAALAAQAAERGMH 178

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  ++  +++   ER +     L+D +D  +L+ G  IT  L   +L +
Sbjct: 179 LAPEIINWMLIHHERDIRKLAALIDALDRYSLATGRPITLPLLRAMLAD 227


>gi|226326920|ref|ZP_03802438.1| hypothetical protein PROPEN_00780 [Proteus penneri ATCC 35198]
 gi|225204757|gb|EEG87111.1| hypothetical protein PROPEN_00780 [Proteus penneri ATCC 35198]
          Length = 466

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 90/249 (36%), Gaps = 31/249 (12%)

Query: 24  KEEQLFFSFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76
              QL                D+ +   + + A          P      + L G +G G
Sbjct: 118 PASQLP-ELNYRSNVNPKHKFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLG 176

Query: 77  KSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND- 123
           K+ L +     I   K+ +      ++     ++   +   +ED       +D L  +D 
Sbjct: 177 KTHLLHAVGNSIMERKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDI 236

Query: 124 ----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
                      + FH  N++ + +  +++T+  +P         L SR      V I  P
Sbjct: 237 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 296

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           + +    +++K   + QI +  ++A +I +R+  ++   E  ++++   A   G  IT  
Sbjct: 297 ELETRVAILMKKADENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 356

Query: 234 LAAEVLKET 242
              E L++ 
Sbjct: 357 FVREALRDL 365


>gi|118602306|ref|YP_903521.1| regulatory inactivation of DnaA Hda protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567245|gb|ABL02050.1| regulatory inactivation of DnaA Hda protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 224

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 89/222 (40%), Gaps = 11/222 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLAN--I 83
           QL         +   + +     +Q +  ++       S VV + G   SGK+ L     
Sbjct: 3   QLGLPLSLNSKMLLSNFI-GKKNQQVLDFVNQLLTQKSSAVVFISGAKSSGKTHLLQGCA 61

Query: 84  WSDKSR--STRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF-NDTQLFHIINSIHQYD 137
           +S         + +I + L   +I+    V    ++++D L       LF + N I   D
Sbjct: 62  FSALDGQLGVIYIDIKQELPEGIINDLVSVDWICIDNVDYLSIIQQQALFDLYNRIKLAD 121

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           + L+++A + P    + L DL +RL  A V  +   +D+    +I +   D  I ID K+
Sbjct: 122 TKLIVSAGSLPGELNL-LKDLKTRLSLAVVFTLETLNDEQKILIIERKMTDININIDIKV 180

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             Y+ +   R L      ++ +D  +L +   I+     + L
Sbjct: 181 YHYLFKVFSRDLNDVLNAINILDETSLQKKNNISIPFVKQTL 222


>gi|187477231|ref|YP_785255.1| DnaA regulatory inactivator Hda [Bordetella avium 197N]
 gi|115421817|emb|CAJ48331.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 229

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 19/231 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL          S ++ +      +A+    +      R V L GP+GSG++ L     
Sbjct: 3   RQLLLDVLPAPAPSLNNFIAGP-NGEALAAARALAP--GRAVYLWGPAGSGRTHLLRGLR 59

Query: 86  -------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYD 137
                    S       +A++  +  +     + ++D+ L+D      LF + N   +  
Sbjct: 60  PNAVYIDAASGPKLLRQLAEADSTAPMPAI--IAVDDVHLMDKARQAALFALYNRWRESA 117

Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           ++     L +     P+S  +   DL +RL    V ++    D      +    ADR + 
Sbjct: 118 ATDRAFALAVAGDRAPMSLPLR-EDLRTRLGWDLVFRLEPLSDADKLSALSAQAADRGLQ 176

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +  ++  +++   ER +     L+D +D  +L+ G  IT +L   +L E+Q
Sbjct: 177 LAPEVINWMLTHHERDIRKLASLLDALDRYSLATGRPITTALLRAMLAESQ 227


>gi|253997932|ref|YP_003049995.1| Sigma 54 interacting domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253984611|gb|ACT49468.1| Sigma 54 interacting domain protein [Methylovorus sp. SIP3-4]
          Length = 204

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 20/209 (9%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANI 83
           +QL          S D+ +      +A+  + +        R + L G +GSGKS L + 
Sbjct: 2   KQLLLDIQPSALPSLDNFVPG-RNAEALHSLRAALEGQSAQRFIYLWGETGSGKSHLLHA 60

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLM 142
            +    +                    +  +D+ LL   +   LF   N +   +  L+ 
Sbjct: 61  CNRAGEAL---------------GAHVICADDVHLLSNEEQIALFDSYNHLRAGEGVLVA 105

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
                P +  +   DL +RL      ++    D+     + +  A R + +  ++  Y +
Sbjct: 106 AGIAAPTAMQLR-DDLATRLAWGLSYQLHPLSDEEKALALRQHAAARGMRLPDEVLDYCL 164

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           + + R L      +D +D  +LS    +T
Sbjct: 165 RHLRRDLPTLVSTLDALDEWSLSYKRPVT 193


>gi|253566260|ref|ZP_04843714.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           3_2_5]
 gi|251945364|gb|EES85802.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           3_2_5]
          Length = 476

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 90/271 (33%), Gaps = 43/271 (15%)

Query: 12  VPDKQKNDQP---KNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66
           +P   +   P   +    Q     P      + +  +   + + +  + ++    P++  
Sbjct: 108 LPRVDERKAPGLLRAPAVQ-DLD-PHLNPNYNFETFIEGYSNKLSRSVAEAVAENPAKTV 165

Query: 67  ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------- 108
              + L G SG GK+ LAN        TR   +      + +                  
Sbjct: 166 FNPLFLHGASGVGKTHLANAI-----GTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTT 220

Query: 109 ----------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                       ++++DI             FHI N +HQ    L++T+   PV      
Sbjct: 221 NDFINFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGME 280

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L +R K   V ++  P  +  + ++        +    ++  YI + +  S+   E +
Sbjct: 281 ERLLTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGI 340

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           V  +   +      I   LA  ++++   C+
Sbjct: 341 VISIMAHSTIYNKEIDLDLAQRIVRKVVHCE 371


>gi|53715109|ref|YP_101101.1| chromosomal replication initiation protein [Bacteroides fragilis
           YCH46]
 gi|60683067|ref|YP_213211.1| chromosomal replication initiation protein [Bacteroides fragilis
           NCTC 9343]
 gi|265766960|ref|ZP_06094789.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_16]
 gi|61212532|sp|Q64PL4|DNAA_BACFR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|81313879|sp|Q5L9D0|DNAA_BACFN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|52217974|dbj|BAD50567.1| chromosomal replication initiator protein DnaA [Bacteroides
           fragilis YCH46]
 gi|60494501|emb|CAH09298.1| putative chromosomal replication initiator protein [Bacteroides
           fragilis NCTC 9343]
 gi|263253337|gb|EEZ24813.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_16]
 gi|301164582|emb|CBW24141.1| putative chromosomal replication initiator protein [Bacteroides
           fragilis 638R]
          Length = 476

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 91/271 (33%), Gaps = 43/271 (15%)

Query: 12  VPDKQKNDQP---KNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66
           +P   +   P   +    Q     P      + +  +   + + +  + ++    P++  
Sbjct: 108 LPRVDERKAPGLLRAPAVQ-DLD-PHLNPNYNFETFIEGYSNKLSRSVAEAVAENPAKTV 165

Query: 67  ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------- 108
              + L G SG GK+ LAN        TR   +      + +                  
Sbjct: 166 FNPLFLHGASGVGKTHLANAI-----GTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTT 220

Query: 109 ----------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                       ++++DI             FHI N +HQ    L++T+   PV      
Sbjct: 221 NDFINFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGME 280

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L +R K   V ++  P  +  + ++        +    ++  YI + +  S+   E +
Sbjct: 281 ERLLTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGI 340

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           V  +   +      I   LA  ++++  +C+
Sbjct: 341 VISIMAHSTIYNKEIDLDLAQRIVRKVVRCE 371


>gi|255319431|ref|ZP_05360646.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SK82]
 gi|255303499|gb|EET82701.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SK82]
          Length = 239

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D     +    V  +    +       + G +GSGKS L +   
Sbjct: 6   RQLQLDIELQLDARISDF-SGPSWGPVVDAVRQLHAGLMNRFYIYGAAGSGKSHLLSAIC 64

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDF---NDTQLFHIINSI 133
           D       S I  SL  +L    +          V L+DI+ +         +FH+IN  
Sbjct: 65  DSYMEVGKSAIKVSLLELLDAPIEAITSLEKYDLVALDDIEAISGVPHWQRAVFHLINYN 124

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190
           ++    L+ ++R  P+   + LPDL SRL  A  VK+  P+       + ++  + A R 
Sbjct: 125 NEEGGQLIFSSRFAPMELKLELPDLQSRLTQAVSVKV--PNGSLYADRQALVHSVLARRG 182

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           + +D+++  Y++           + +++++ L       ++
Sbjct: 183 VQLDQQIIDYLLLHGPHQAARLLQTLEQLETLLKGERTRLS 223


>gi|147676336|ref|YP_001210551.1| chromosomal replication initiation protein [Pelotomaculum
           thermopropionicum SI]
 gi|146272433|dbj|BAF58182.1| ATPase [Pelotomaculum thermopropionicum SI]
          Length = 447

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 90/238 (37%), Gaps = 26/238 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  +V ++   A     +    P++    + + G  G GK+ L +         
Sbjct: 111 NPKYTFDTFVVGNSNRFAHAACLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGQHILEH 170

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFND---TQLFH 128
                     S+K  +   + I         +  +    +L++DI  L   +    + FH
Sbjct: 171 SNKMKVSYVTSEKFTNELINAIKDDKTVEFRNKYRGMDILLVDDIQFLAGKERTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 231 TFNTLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKSQQ 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             +F+      YI  R++ ++   E  + ++   A   G  I+  LAAEVLK+    +
Sbjct: 291 ENLFVPDDTIFYIANRIQSNIRELEGALIRVIAYASLNGKEISPELAAEVLKDILPPE 348


>gi|284007063|emb|CBA72338.1| chromosomal replication initiator protein [Arsenophonus nasoniae]
          Length = 461

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + ++ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 126 VNPKHTFNNFVEGKSNQLARAAASQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNNIMA 185

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
            K+ +      ++     ++   +   +ED       +D L  +D            + F
Sbjct: 186 RKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDIQFFANKERSQEEFF 245

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 246 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 305

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 306 ENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 360


>gi|120610651|ref|YP_970329.1| chromosomal replication initiator DnaA [Acidovorax citrulli
           AAC00-1]
 gi|120589115|gb|ABM32555.1| Chromosomal replication initiator, DnaA [Acidovorax citrulli
           AAC00-1]
          Length = 236

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 22/235 (9%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID--------SWPSWPSRV---VILVGPSG 74
           +QL        G +        A  QA++ +         +  + P R      L G SG
Sbjct: 2   KQLALDIGLSTGPTLARFFPG-ANAQALQHLRIAVGEGDAASGAAPVRSPVPTYLWGESG 60

Query: 75  SGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFH- 128
           SGK+ L         ++  +  + + +  L +   +    VLL+++ L         F+ 
Sbjct: 61  SGKTHLLEAVREALREQGCTVGWLDASVMLPTAFDERWSAVLLDEVHLYSTAQQAAAFNW 120

Query: 129 IINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            IN+          +L      P    +   DL +RL    + ++ L D+     V+ + 
Sbjct: 121 FINAISPAVGAPRWVLAAGELPPADLPLR-DDLRTRLGWGHIFQLHLLDETERRAVLRQE 179

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              R I +   +  Y++ R  R L    +L+D++D+ AL     IT  L   +L+
Sbjct: 180 ADARGIALGDDVVNYMLGRFSRDLGSLMQLLDQLDSFALRTQRAITIPLLKTMLE 234


>gi|262379394|ref|ZP_06072550.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens
           SH164]
 gi|262298851|gb|EEY86764.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens
           SH164]
          Length = 235

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D     +    V  +    +       + G +GSGKS L +   
Sbjct: 2   RQLQLDIELQLDARISDF-SGPSWGPVVDAVRQLHAGLMNRFYIYGAAGSGKSHLLSAIC 60

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDF---NDTQLFHIINSI 133
           D       S I  SL  +L    +          V L+DI+ +         +FH+IN  
Sbjct: 61  DSYMEVGKSAIKVSLLELLDAPIEAITSLEKYDLVALDDIEAISGVPHWQRAVFHLINYN 120

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190
           ++    L+ ++R  P+   + LPDL SRL  A  VK+  P+       + ++  + A R 
Sbjct: 121 NEEGGQLIFSSRFAPMELKLELPDLQSRLTQAVSVKV--PNGSLYADRQALVHSVLARRG 178

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           + +D+++  Y++           + +++++ L       ++
Sbjct: 179 VQLDQQIIDYLLLHGPHQAARLLQTLEQLETLLKGERTRLS 219


>gi|50085702|ref|YP_047212.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter sp. ADP1]
 gi|49531678|emb|CAG69390.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter sp. ADP1]
          Length = 235

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 18/228 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D          V  +    +       + G +GSGKS L +   
Sbjct: 2   RQLQLDIEPQLDARISDF-SGPGWGHVVDAVRQLHAGLMNRFYIYGGAGSGKSHLLSAIC 60

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT-----------QLFHIINSI 133
           D       S I  SL  +L    + +  LE  DL+  +D             +FH+IN  
Sbjct: 61  DSYLEIGKSAIKVSLLELLDAPIEAITSLERYDLVALDDIEAISGVPHWQKAVFHLINYN 120

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE---KVIVKMFADRQ 190
           ++    L+ ++R  P+   + LPDL SRL  A  VK+  P+         +I+   + R 
Sbjct: 121 NEVGGQLVFSSRVAPIELRLELPDLQSRLTQAVSVKL--PNGSLFADRQALILSTMSRRG 178

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           +  D ++  Y++           K + +++ L       ++ +   ++
Sbjct: 179 LQFDPQILDYLLLHGPHQASLLLKTIAQLEKLLKGEKTKLSNATLRQI 226


>gi|206895387|ref|YP_002246434.1| chromosomal replication initiator protein DnaA [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738004|gb|ACI17082.1| chromosomal replication initiator protein DnaA [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 543

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 95/254 (37%), Gaps = 32/254 (12%)

Query: 18  NDQP--KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72
           +D P  K K + L          + D+ +V  +   A     +    P +    + + G 
Sbjct: 191 SDNPVKKGKPKSLI---RLNPRYTFDEFVVGDSNRLAYAGARAVAENPGKRFNPLFIWGG 247

Query: 73  SGSGKSCLANIW------------------SDKSRSTRFSNIAKSLDSILIDTRKPV--- 111
            G GK+ L +                    +++  +    +I K+         + V   
Sbjct: 248 VGLGKTHLLHAIGNYLLQQQEPDMQVLYITAEEFTNEMVESIKKNSPEDFRAHYRTVDVL 307

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI  +   +   T+ FH  N+++Q    +++T+   P    +    L SR +    V
Sbjct: 308 LIDDIQFIAGKEATQTEFFHTFNTLYQAGKQIVITSDHPPQELTLLEDRLRSRFQQGLTV 367

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            I  PD +    ++ +      + +  ++  +I   +  ++   E  + K+  LA  + +
Sbjct: 368 DIQRPDFETRVAILERKAQKEGLDVPSEVIEFIAHAVATNIRELEGALTKVTALATLQNV 427

Query: 229 GITRSLAAEVLKET 242
            +T  LA + L + 
Sbjct: 428 PMTLGLAKQALGDV 441


>gi|290473095|ref|YP_003465956.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Xenorhabdus bovienii
           SS-2004]
 gi|289172389|emb|CBJ79156.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Xenorhabdus bovienii
           SS-2004]
          Length = 462

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 99/250 (39%), Gaps = 27/250 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75
           D  K + E L +        + D+ +   + + A          P      + L G +G 
Sbjct: 113 DNAKAQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 171

Query: 76  GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115
           GK+ L +     I + K+ +            ++ K+L +  I+       +   +L++D
Sbjct: 172 GKTHLLHAVGNSIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I      +    + FH  N++ + +  +++T+  +P         L SR      V I  
Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+ +    +++K   + QI +  ++A +I +R+  ++   E  ++++   A   G  IT 
Sbjct: 292 PELETRVAILMKKADENQIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 351

Query: 233 SLAAEVLKET 242
               E L++ 
Sbjct: 352 DFVREALRDL 361


>gi|294789487|ref|ZP_06754723.1| DnaA regulatory inactivator Hda [Simonsiella muelleri ATCC 29453]
 gi|294482567|gb|EFG30258.1| DnaA regulatory inactivator Hda [Simonsiella muelleri ATCC 29453]
          Length = 224

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 12/224 (5%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL   F   L   R D L+ +A      LI        + + + G  G+GKS +   W  
Sbjct: 4   QLSLDFD-ELDYPRFDQLLGNANA---ELIYFLQQKHDQFIYIWGEKGAGKSHILQAWVG 59

Query: 87  KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQ-YDSS 139
           ++     R+        SL + L+   + V ++ I+ L   +   LF++ N        +
Sbjct: 60  QALQAGHRAIYIDADKTSLTAHLVADAEYVAIDQIEKLRSREQSVLFNLFNHFRNTRQGN 119

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           LL+ +   P    +   DL +R+      ++     D     +  +   RQ+ ID K+  
Sbjct: 120 LLLASDFHPAKLNLR-EDLRTRVAYCLAYEVQPLSRDEKINALKHLAKTRQLHIDPKIYE 178

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           Y+  +  + +     + D +   +++ G  +T +L  ++LK+ +
Sbjct: 179 YLHDQWRQDMSHLLSIFDDLVAYSVAIGKPLTLNLVKQLLKQQE 222


>gi|300721090|ref|YP_003710358.1| DNA replication initiator protein [Xenorhabdus nematophila ATCC
           19061]
 gi|297627575|emb|CBJ88094.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Xenorhabdus
           nematophila ATCC 19061]
          Length = 462

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 99/250 (39%), Gaps = 27/250 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75
           D  K + E L +        + D+ +   + + A          P      + L G +G 
Sbjct: 113 DNVKTQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 171

Query: 76  GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115
           GK+ L +     I + K+ +            ++ K+L +  I+       +   +L++D
Sbjct: 172 GKTHLLHAVGNSIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I      +    + FH  N++ + +  +++T+  +P         L SR      V I  
Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+ +    +++K   + QI +  ++A +I +R+  ++   E  ++++   A   G  IT 
Sbjct: 292 PELETRVAILMKKADENQIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 351

Query: 233 SLAAEVLKET 242
               E L++ 
Sbjct: 352 DFVREALRDL 361


>gi|239993750|ref|ZP_04714274.1| Chromosomal replication initiator protein dnaA [Alteromonas
           macleodii ATCC 27126]
          Length = 551

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
                 D+ +   + + A        + P      + + G +G GK+ L +     I ++
Sbjct: 217 NPTYQFDNFVEGKSNQLARAAATQVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVAN 276

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
              +      ++     ++   +   +ED       +D L  +D            + FH
Sbjct: 277 NGDAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFH 336

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      + I  P+ +    ++++  A+
Sbjct: 337 TFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAAE 396

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 397 NRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 450


>gi|332139411|ref|YP_004425149.1| Chromosomal replication initiator protein dnaA [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327549433|gb|AEA96151.1| Chromosomal replication initiator protein dnaA [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 554

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
                 D+ +   + + A        + P      + + G +G GK+ L +     I ++
Sbjct: 220 NPTYQFDNFVEGKSNQLARAAATQVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVAN 279

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
              +      ++     ++   +   +ED       +D L  +D            + FH
Sbjct: 280 NGDAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFH 339

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      + I  P+ +    ++++  A+
Sbjct: 340 TFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAAE 399

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 400 NRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 453


>gi|332830222|gb|EGK02850.1| chromosomal replication initiator protein DnaA [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 467

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWS 85
           F     L  + D+     + + A    ++    P +     + L G SG GK+ L +   
Sbjct: 126 FDSQLNLKYTFDNFFEGESNKLARTAGETITKNPGKTAFNPLFLHGTSGVGKTHLCHAIG 185

Query: 86  DK----------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            +                      + + R++     ++         ++++DI  L   +
Sbjct: 186 TRIKELYPEKRVLYVSAHLFKIQYADAGRYNTTNDFIN--FYQGIDVLIIDDIHELAGIE 243

Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                LFHI N +HQ +  L++T+   P         L +R +     KI  PD     K
Sbjct: 244 RTQNTLFHIFNHLHQNNKQLILTSDKSPSELQGVEERLLTRFRWGLTTKIDHPDKGLRLK 303

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++        + I + +  YI + +  +    E ++  +   +L     I   LA  V+ 
Sbjct: 304 ILQNKILHDGLSIPEDVVDYIAENVTDNARDLEGIIVSIMAHSLVYNKEIDLPLARRVIG 363

Query: 241 ET 242
           + 
Sbjct: 364 QA 365


>gi|56459113|ref|YP_154394.1| DNA replication initiation ATPase [Idiomarina loihiensis L2TR]
 gi|61212492|sp|Q5QY39|DNAA_IDILO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56178123|gb|AAV80845.1| ATPase involved in DNA replication initiation [Idiomarina
           loihiensis L2TR]
          Length = 454

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 92/240 (38%), Gaps = 26/240 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--- 82
            F        + D+ +   + + A          P  V   + + G +G GK+ L +   
Sbjct: 114 PFESNIHPEYTFDNFVEGKSNQLARAAAIQVAENPGGVYNPLFVYGGTGLGKTHLLHAVG 173

Query: 83  --IWSDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FN 122
             I + K  +  F   A+     ++++ +                +L++DI        +
Sbjct: 174 NGIMAHKKDAKVFYIRAERFVQDMVNSIRNSSTNEFKRYYRSVDALLIDDIHFFANKKGS 233

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N++ + +  ++MT+  +P         L SR      + I  P+ +    ++
Sbjct: 234 QEEFFHTFNALLEGNQQIIMTSDLYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAIL 293

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++   +R + +  ++A +I +R+  ++   E  ++++       G  IT     E L++ 
Sbjct: 294 MRKADERGLHMPHEVAFFIAKRLRSNVRELEGALNRVVANVQLTGRPITIDFVREALRDL 353


>gi|326317989|ref|YP_004235661.1| DnaA regulatory inactivator Hda [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374825|gb|ADX47094.1| DnaA regulatory inactivator Hda [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 236

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 88/235 (37%), Gaps = 22/235 (9%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------SWPSWPSRV-----VILVGPSG 74
           +QL        G +        A  QA++ +          S  + V       L G SG
Sbjct: 2   KQLALDIGLSTGPTLARFFPG-ANAQALQHLRIAVGEGDAASGTAPVRSPVPTYLWGESG 60

Query: 75  SGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFH- 128
           SGK+ L         ++  +  + + +  L +   +    VLL+++ L         F+ 
Sbjct: 61  SGKTHLLEAVREALREQGCTVGWLDASVMLPTAFDERWSAVLLDEVHLYSTAQQAAAFNW 120

Query: 129 IINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            IN+          +L      P    +   DL +RL    + ++ L D+     V+ + 
Sbjct: 121 FINAISPAVGAPRWVLAAGELPPADLPLR-DDLRTRLGWGHIFQLHLLDETERRAVLRQE 179

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              R I +   +  Y++ R  R L    +L+D++D+ AL     IT  L   +L+
Sbjct: 180 ADARGIALGDDVMNYMLGRFSRDLGSLMQLLDQLDSFALRTQRAITIPLLKTMLE 234


>gi|255011256|ref|ZP_05283382.1| chromosomal replication initiation protein [Bacteroides fragilis
           3_1_12]
 gi|313149067|ref|ZP_07811260.1| chromosomal replication initiator protein dnaA [Bacteroides
           fragilis 3_1_12]
 gi|313137834|gb|EFR55194.1| chromosomal replication initiator protein dnaA [Bacteroides
           fragilis 3_1_12]
          Length = 475

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 90/271 (33%), Gaps = 43/271 (15%)

Query: 12  VPDKQKNDQP---KNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66
           +P   +   P   +    Q     P      + +  +   + + +  + ++    P++  
Sbjct: 108 LPRVDERKAPGLLRAPAVQ-DLD-PHLNPNYNFETFIEGYSNKLSRSVAEAVAENPAKTV 165

Query: 67  ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------- 108
              + L G SG GK+ LAN        TR   +      + +                  
Sbjct: 166 FNPLFLHGASGVGKTHLANAI-----GTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTT 220

Query: 109 ----------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                       ++++DI             FHI N +HQ    L++T+   PV      
Sbjct: 221 NDFINFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGME 280

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L +R K   V ++  P  +  + ++        +    ++  YI + +  S+   E +
Sbjct: 281 ERLLTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGI 340

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           V  +   +      I   LA  ++++  + +
Sbjct: 341 VISIMAHSTIYNKEIDLDLAQRIVRKVVRSE 371


>gi|317402336|gb|EFV82911.1| hypothetical protein HMPREF0005_00122 [Achromobacter xylosoxidans
           C54]
          Length = 233

 Score =  127 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 87/229 (37%), Gaps = 17/229 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL          S ++ +      +A+  + +    P R + + G +G G+S L    +
Sbjct: 3   RQLLLDVLPAPAPSLNNFIAGP-NGEALAAVRTLA--PGRALYIWGSAGCGRSHLLRALT 59

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLDFNDTQ-LFHIINSIHQYD 137
            +  +        +    ++            V ++D+ L+D +    LF + N   +  
Sbjct: 60  ARPDAVYIEAANSANILRVLAEADSKSPMPKFVAVDDVHLMDEHRQAGLFALYNRWRESA 119

Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           ++     L +      +S  +   DL +RL    V ++    D      +    A+R + 
Sbjct: 120 ATGRAFALAVAGDRSTLSMPLR-EDLRTRLGWDLVFRLDPLSDADKLAALAAQAAERGLH 178

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  ++  +++   ER +     L+D +D  +L+ G  IT  L   +L +
Sbjct: 179 LAPEIINWMLTHHERDIRKLAALLDALDRYSLATGRPITLPLLRAMLAD 227


>gi|148244412|ref|YP_001219106.1| DnaA family protein [Candidatus Vesicomyosocius okutanii HA]
 gi|146326239|dbj|BAF61382.1| DnaA family protein [Candidatus Vesicomyosocius okutanii HA]
          Length = 224

 Score =  127 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 11/222 (4%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLANIWS 85
           QL         I   + +  +  +Q +  ++  +    S VV + G   SGK+ L    +
Sbjct: 3   QLGLPLLLNSKILLSNFI-GNKNQQVLDFVNRLFTQKRSAVVFISGTKSSGKTHLLQGCA 61

Query: 86  ----DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF-NDTQLFHIINSIHQYD 137
               DK  +  + +I + L   +I     V    ++++D L       LF + N      
Sbjct: 62  FSALDKKLNVAYIDIKQELPKGIISDLTSVDWICIDNVDCLSITQQQALFDLYNRNKPTS 121

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             L++ A + P    + L DL +RL  A    + + +D+    +I +  AD+ I I+ K+
Sbjct: 122 VKLIIAASSSPNELNL-LKDLKTRLSLAVAFTLEVLNDEQKILIIERKMADKNININSKV 180

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             Y+ +   R L     ++  ++  +L +   I+     ++L
Sbjct: 181 YHYLFKVFSRDLNDILNVISVLEEASLQQKSNISIPFVKQIL 222


>gi|225028838|ref|ZP_03718030.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353]
 gi|224953834|gb|EEG35043.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353]
          Length = 448

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 100/270 (37%), Gaps = 31/270 (11%)

Query: 6   EDYSFFVPDKQKNDQPKNKEEQLFFSFPR----CLGISRDDLLVHSAIEQAVR---LIDS 58
           + +     D   +  PK++ +++              + D  +V    + A      +  
Sbjct: 81  KQFKILFTDS-NSAAPKSEPKKVSVPAEYIGNLNPRYTFDTFVVGPTNKMAHAVSVAVAE 139

Query: 59  WPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKP--- 110
            P      + L G +G GK+ L +     I +++         ++   + LID+ K    
Sbjct: 140 SPGGAYNPLFLYGGAGLGKTHLMHSIAHHIINNRPDLRVLYVTSEKFTNELIDSLKHDKN 199

Query: 111 ------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                       +L++DI  +   +    + FH  N +H+    +++++   P       
Sbjct: 200 KEFRDKYRNIDVLLIDDIQFIIGKESTQEEFFHTFNELHEAKKQIVISSDKHPREIATLE 259

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L SR +      I  PD +    ++ K      + I++++  Y+   +  ++   E  
Sbjct: 260 ERLRSRFEWGITADIQPPDYETKMAILKKRAELEHLDINQEVMQYVATNINSNIRELEGA 319

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           ++K+   A      +T  LA   LK+T +C
Sbjct: 320 LNKIYVFANLEKKPVTLELAENALKDTIEC 349


>gi|253987484|ref|YP_003038840.1| chromosomal replication initiation protein [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253778934|emb|CAQ82094.1| chromosomal replication initiator protein dnaA [Photorhabdus
           asymbiotica]
          Length = 439

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 104 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMA 163

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
            K+ +      ++     ++   +   +ED       +D L  +D            + F
Sbjct: 164 RKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDIQFFANKERSQEEFF 223

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 224 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 283

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 284 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 338


>gi|332991509|gb|AEF01564.1| Chromosomal replication initiator protein dnaA [Alteromonas sp.
           SN2]
          Length = 557

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86
                 D+ +   + + A        + P      + + G +G GK+ L +     I ++
Sbjct: 223 NPTYQFDNFVEGKSNQLARAAATQVANNPGSSYNPLFIYGGTGLGKTHLLHAVGNGIVAN 282

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
              +      ++     ++   +   +ED       +D L  +D            + FH
Sbjct: 283 NENAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFH 342

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      + I  P+ +    ++++  A+
Sbjct: 343 TFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAAE 402

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 403 NRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 456


>gi|333029142|ref|ZP_08457203.1| Chromosomal replication initiator protein dnaA [Bacteroides
           coprosuis DSM 18011]
 gi|332739739|gb|EGJ70221.1| Chromosomal replication initiator protein dnaA [Bacteroides
           coprosuis DSM 18011]
          Length = 470

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 92/262 (35%), Gaps = 30/262 (11%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VI 68
           P  +    P+    Q           + +  +  ++ + +  + ++    P++     + 
Sbjct: 113 PRTRIPQAPQAPAIQ-ELDPRLNPDYTFETFIEGNSNKLSRSVAEAVAENPAKTVFNPLF 171

Query: 69  LVGPSGSGKSCLA---------------------NIWSDKSRSTRFSNIAKSLDSILIDT 107
           + G SG GK+ LA                     +++  +   +  +N           T
Sbjct: 172 IHGNSGVGKTHLANAIGLRIKERYPEKRVLYVSAHLFQIQYTDSVRNNTTNDF-INFYQT 230

Query: 108 RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              ++++DI             FHI N +HQ    L++T+   PV        L +R K 
Sbjct: 231 IDVLIIDDIQEFAGVVKTQNTFFHIFNHLHQNGKQLILTSDLPPVLLQGMEDRLLTRFKW 290

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             V ++  P  +  + ++        +    ++  YI + ++ S+   E +V  +   + 
Sbjct: 291 GMVAELERPSVELRKDILRNKIHRDGLDFPTEVITYIAENVDDSVRDLEGIVISIMAHST 350

Query: 225 SRGMGITRSLAAEVLKETQQCD 246
                I   LA  ++K+  + +
Sbjct: 351 IYNKEIDLDLAQRIVKKVVRSE 372


>gi|262368617|ref|ZP_06061946.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262316295|gb|EEY97333.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 234

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 18/228 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D          +  I    +       + G +GSGKS L +   
Sbjct: 2   RQLQLDIEPQLDARISDF-SGPGWGPVIDAIRQLHAGLMNRFYVYGGAGSGKSHLLSAIC 60

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT-----------QLFHIINSI 133
           D       S I  SL  +L    + +  LE  DL+  +D             +FH+IN  
Sbjct: 61  DSYLDVGKSAIQVSLLELLDAPTEAITSLERFDLVALDDIEAISGVPHWQKAVFHLINYN 120

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190
           ++    L+ ++R  P+   + LPDL SRL  A  VK+  P+         +++ + + R 
Sbjct: 121 NEEGGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PNGSLYADRSTLVMSVLSRRG 178

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           I ID+++  Y++           + ++++  L       ++ +   ++
Sbjct: 179 IHIDQQIIDYLLAHGPHQTSVLLQSLEQLIQLLKGEKTKLSNANLRQI 226


>gi|145630851|ref|ZP_01786628.1| hypothetical protein CGSHi22421_02616 [Haemophilus influenzae
           R3021]
 gi|144983511|gb|EDJ90979.1| hypothetical protein CGSHi22421_02616 [Haemophilus influenzae
           R3021]
          Length = 136

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAAT 166
           V L+D+  +  ND     +F + N I     +LL+ +A   P +  V LPDL SRL    
Sbjct: 2   VCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGE 61

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           + +++   D+   +V+      R   +  + A +++ R+ R +    + +D +D  +L  
Sbjct: 62  IYQLNSLTDEQKVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQA 121

Query: 227 GMGITRSLAAEVLK 240
              +T     E+L 
Sbjct: 122 QRNLTIPFVKEILN 135


>gi|154491703|ref|ZP_02031329.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC
           43184]
 gi|218264325|ref|ZP_03478182.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii
           DSM 18315]
 gi|154087944|gb|EDN86989.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC
           43184]
 gi|218222093|gb|EEC94743.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii
           DSM 18315]
          Length = 462

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 93/264 (35%), Gaps = 34/264 (12%)

Query: 14  DKQKNDQP---KNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
            K+  D P   ++K  Q    +        + D+    ++        ++    P +   
Sbjct: 105 GKKSADIPSLFESKARQ---DWDSHLNPKYNFDNYFEGTSNRLVRSSSEAIAQEPGKTFN 161

Query: 67  -VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI-------------------- 105
            + + G SG GK+ L +   ++ +          + + L                     
Sbjct: 162 PMFVFGASGVGKTHLCHAIGNRIQEIHPEKKVLYISAHLFTVQYTEAIRKNTTNDFMYFY 221

Query: 106 DTRKPVLLEDI-DLLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++L+DI +L+  +      FHI N +H     L++T+   PV        L +RL
Sbjct: 222 QGVDVLILDDIQELIGKDKTQNTFFHIFNHLHLLGKQLILTSDKAPVDLQGMEERLITRL 281

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD D  +K++    +   + I   +  +I   +  ++   E +V  +   
Sbjct: 282 KWGLTAELDRPDLDLRKKILKNKISHDGVVIPDDVFNFIASNVTENVRDVEGIVASLLAY 341

Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246
           + +    I   L  +V+    + +
Sbjct: 342 STAFNRMIDLPLTKQVVSRVVKLE 365


>gi|319955761|ref|YP_004167024.1| chromosomal replication initiator protein dnaa [Nitratifractor
           salsuginis DSM 16511]
 gi|319418165|gb|ADV45275.1| chromosomal replication initiator protein DnaA [Nitratifractor
           salsuginis DSM 16511]
          Length = 442

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 84/232 (36%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS----DK 87
               + +  +V S+ + A     S    P ++   + + G  G GK+ L          +
Sbjct: 104 NPSFTFESFIVGSSNQFAYTTALSVAEKPGKLYNPLFIYGGVGLGKTHLLQAIGNYRLQQ 163

Query: 88  SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHII 130
                ++ +   L+  L   +                +L++DI  L   +    +LFH  
Sbjct: 164 GDQVIYTTLEHFLNKFLSHLQSQTMEKFREHYRNCDLLLIDDIQFLSRKEKTQDELFHTF 223

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +H     ++MT+   P         L +R +      I  P+ +    +I K      
Sbjct: 224 NELHNAGKQIVMTSDRPPKKIAFLEERLRTRFEWGLQADIQPPELETKIAIIQKKCELDG 283

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I +D+++  YI   M  ++   E  + +++ ++      IT   A   +K+ 
Sbjct: 284 IRLDQEIIHYIATHMGDNIREIEGTLIRLNAMSAMLNQPITLEFARNAIKDQ 335


>gi|239996083|ref|ZP_04716607.1| Chromosomal replication initiator, DnaA like protein to DnaA
           protein Hda [Alteromonas macleodii ATCC 27126]
          Length = 245

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 96/251 (38%), Gaps = 44/251 (17%)

Query: 26  EQLFFS--FPRCLGISRDDLLVHSAIEQAVRLID-------SWPSWPSRVVILVGP---- 72
            QL      P        D  V++  E+ V +++        W   P      +GP    
Sbjct: 1   MQLPLPVTLPVDENF---DSFVNTGNEEVVSVLEQIADALPHWREAPE-----LGPLASL 52

Query: 73  -------SGS---GKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLL 113
                   GS   GKS L      +      S++  +L++           ++    + L
Sbjct: 53  QLPLLTLLGSTAIGKSHLLFATCHQLAEKSVSHLYLNLNNYEAWSLDIFEGLENLSLIAL 112

Query: 114 EDIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++I  +  +   +  LF ++N + +   ++++ ++   P +    LPDL SRL    +  
Sbjct: 113 DNIHAIAGDLRWEEALFDLLNRVIETKQTMVLCSSHLGPSNPAFVLPDLRSRLAWGVIYH 172

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           ++  DD+  E+ +    A+R + +  +   +++   ER L     L+ ++D  +L     
Sbjct: 173 VNQLDDNGREEAVRLRAAERGLKLSNQALQFLLHHSERDLKSLMSLLARLDTRSLQEQKR 232

Query: 230 ITRSLAAEVLK 240
           ++  +    L 
Sbjct: 233 LSVGMVKRELN 243


>gi|313674130|ref|YP_004052126.1| chromosomal replication initiator protein dnaa [Marivirga tractuosa
           DSM 4126]
 gi|312940828|gb|ADR20018.1| chromosomal replication initiator protein DnaA [Marivirga tractuosa
           DSM 4126]
          Length = 471

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 93/280 (33%), Gaps = 42/280 (15%)

Query: 6   EDYSFFVPDKQKNDQPKNKEEQLFF--------SFP-----RCLGISRDDLLVHSAIEQA 52
           + ++  +P+  K+++PK ++ +                        + D  +       A
Sbjct: 91  KPFTINLPNNNKSNKPKEQQREQPLNPFALNGVDLSQQNSQLNPNYTFDTFIEGDCNRLA 150

Query: 53  ----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSI 103
                 +           +++ G  G GK+ L     ++     +        ++   + 
Sbjct: 151 RSAGYAVAKKPGITSFNPLMIYGGVGLGKTHLVQAIGNEIKDTLNGKFVLYVSSEKFTNQ 210

Query: 104 LIDT---------------RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTAR 145
            ID                   ++++D+  L   +      FHI N +HQ    ++MT+ 
Sbjct: 211 FIDALRNNKIQDFSNYYLHIDALIIDDVQFLGGKERTQEIFFHIFNHLHQNGKQIIMTSD 270

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L SR K      +  PD +    +I        I I + +  Y+   +
Sbjct: 271 RPPRDLKGLEDRLLSRFKWGLTADLQQPDLETRIAIIQNKMESDGIHIPEDVIEYLAYSV 330

Query: 206 ERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKETQQ 244
           + ++   E ++  +  + +L+R   I   LA + LK    
Sbjct: 331 DTNIRELEGVLISLIAHASLNRK-EIDLELAKQTLKNIVH 369


>gi|126172258|ref|YP_001048407.1| chromosomal replication initiation protein [Shewanella baltica
           OS155]
 gi|152998556|ref|YP_001364237.1| chromosomal replication initiation protein [Shewanella baltica
           OS185]
 gi|160873127|ref|YP_001552443.1| chromosomal replication initiation protein [Shewanella baltica
           OS195]
 gi|217971217|ref|YP_002355968.1| chromosomal replication initiation protein [Shewanella baltica
           OS223]
 gi|304412705|ref|ZP_07394308.1| chromosomal replication initiator protein DnaA [Shewanella baltica
           OS183]
 gi|307305830|ref|ZP_07585576.1| chromosomal replication initiator protein DnaA [Shewanella baltica
           BA175]
 gi|166215328|sp|A3CYH5|DNAA_SHEB5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166215329|sp|A6WH85|DNAA_SHEB8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189083277|sp|A9KU72|DNAA_SHEB9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777912|sp|B8E3P4|DNAA_SHEB2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|125995463|gb|ABN59538.1| chromosomal replication initiator protein DnaA [Shewanella baltica
           OS155]
 gi|151363174|gb|ABS06174.1| chromosomal replication initiator protein DnaA [Shewanella baltica
           OS185]
 gi|160858649|gb|ABX47183.1| chromosomal replication initiator protein DnaA [Shewanella baltica
           OS195]
 gi|217496352|gb|ACK44545.1| chromosomal replication initiator protein DnaA [Shewanella baltica
           OS223]
 gi|304348915|gb|EFM13330.1| chromosomal replication initiator protein DnaA [Shewanella baltica
           OS183]
 gi|306911323|gb|EFN41749.1| chromosomal replication initiator protein DnaA [Shewanella baltica
           BA175]
 gi|315265352|gb|ADT92205.1| chromosomal replication initiator protein DnaA [Shewanella baltica
           OS678]
          Length = 462

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 128 NPSYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 186

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +   +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 187 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 246

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 247 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 306

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 307 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 361


>gi|29347553|ref|NP_811056.1| chromosomal replication initiation protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572014|ref|ZP_04849418.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           1_1_6]
 gi|298383755|ref|ZP_06993316.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           1_1_14]
 gi|38257553|sp|Q8A5U5|DNAA_BACTN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|29339453|gb|AAO77250.1| chromosomal replication initiator protein dnaA [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838194|gb|EES66281.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           1_1_6]
 gi|298263359|gb|EFI06222.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           1_1_14]
          Length = 470

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 28/242 (11%)

Query: 33  PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87
           P      + ++ +   + + +  + ++    P+      + L G SG GK+ LAN    K
Sbjct: 130 PHLNPNYNFENFIEGYSNKLSRSVAEAVAQNPAGTAFNPLFLYGASGVGKTHLANAIGTK 189

Query: 88  SRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLDF---NDT 124
            +          + + L                      T   ++++DI           
Sbjct: 190 IKELYADKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAGVTKTQN 249

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             FHI N +HQ    L++T+   PV        L +R K   V ++  P  +  + ++  
Sbjct: 250 TFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLLTRFKWGMVAELEKPTVELRKNILRN 309

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 +    ++  YI + +  S+   E +V  +   +      I   LA  ++     
Sbjct: 310 KIHRDGLQFPPEVIDYIAENVNESVRDLEGIVIAIMARSTIFNKEIDLDLAQHIVHGVVH 369

Query: 245 CD 246
            +
Sbjct: 370 NE 371


>gi|270264119|ref|ZP_06192386.1| chromosomal replication initiator protein DnaA [Serratia odorifera
           4Rx13]
 gi|270041768|gb|EFA14865.1| chromosomal replication initiator protein DnaA [Serratia odorifera
           4Rx13]
          Length = 463

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 99/258 (38%), Gaps = 27/258 (10%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---V 67
             P +   D    + E L +        + D+ +   + + A          P      +
Sbjct: 106 VAPSRPSWDNAAPQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPL 164

Query: 68  ILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------T 107
            L G +G GK+ L +     I + K+ +            ++ K+L +  I+       +
Sbjct: 165 FLYGGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRS 224

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI      +    + FH  N++ + +  +++T+  +P         L SR   
Sbjct: 225 VDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGW 284

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A 
Sbjct: 285 GLTVAIEPPELETRVAILMKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 344

Query: 225 SRGMGITRSLAAEVLKET 242
             G  IT     E L++ 
Sbjct: 345 FTGRAITIDFVREALRDL 362


>gi|170724371|ref|YP_001758397.1| chromosomal replication initiation protein [Shewanella woodyi ATCC
           51908]
 gi|226735847|sp|B1KCX3|DNAA_SHEWM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|169809718|gb|ACA84302.1| chromosomal replication initiator protein DnaA [Shewanella woodyi
           ATCC 51908]
          Length = 462

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 91/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 ++ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 128 NPTYQFENFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 186

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +K  +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 187 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 246

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 247 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 306

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 307 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 361


>gi|83588876|ref|YP_428885.1| chromosomal replication initiation protein [Moorella thermoacetica
           ATCC 39073]
 gi|83571790|gb|ABC18342.1| chromosomal replication initiator protein DnaA [Moorella
           thermoacetica ATCC 39073]
          Length = 442

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 27/257 (10%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVI 68
            P    N + + + E      P     + +  +V ++   A     +    P      + 
Sbjct: 84  FPLSSSNQRQEPELEDPSLP-PLNPKYTFETFVVGNSNRFAHAACLAVAESPASSYNPLF 142

Query: 69  LVGPSGSGKSCLANIWSDKSRSTR-----------------FSNIAKSLDSILIDTRKPV 111
           + G  G GK+ L      + R                     + I            + +
Sbjct: 143 IYGGVGLGKTHLMQAIGHRVRQHLPELRVMYISSEKFTNDLINAIKDKATEQFRTKYRNI 202

Query: 112 ---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
              L++DI  L   +    + FH  N +++ +  +++++   P         L SR +  
Sbjct: 203 DVLLIDDIQFLAKKESTQEEFFHTFNHLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWG 262

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I  PD +    ++ K      I +  ++  +I Q+++ ++   E  + ++   A  
Sbjct: 263 LITDIQPPDLETRMAILRKKAVAEGINLPDEVMFFIAQKIDSNIRELEGALIRVAAYANF 322

Query: 226 RGMGITRSLAAEVLKET 242
               IT  LA E+LK+ 
Sbjct: 323 TKKEITPGLAEEILKDV 339


>gi|325102758|ref|YP_004272412.1| chromosomal replication initiator protein DnaA [Pedobacter saltans
           DSM 12145]
 gi|324971606|gb|ADY50590.1| chromosomal replication initiator protein DnaA [Pedobacter saltans
           DSM 12145]
          Length = 475

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 87/260 (33%), Gaps = 39/260 (15%)

Query: 10  FFVPDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           F +P  +K    P     QL          + ++ +       A     +  + P     
Sbjct: 124 FVIPGLKKLQVDP-----QL------NPNYTFENFIEGDCNRLARSAGYAVAAKPGGTSF 172

Query: 67  --VILVGPSGSGKSCLANIWSDKSRST--------------------RFSNIAKSLDSIL 104
             +++ G  G GK+ LA    ++ ++                        N   +     
Sbjct: 173 NPLMIYGGVGLGKTHLAQAIGNEIKANMPDKLVICVSCEKFCQQFVDSLKNNTINDFVNF 232

Query: 105 IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                 ++++D+      D      FHI N +HQ    L++T+   P         L SR
Sbjct: 233 YQAMDVIIMDDVHNFAGKDKTQDIFFHIFNHLHQSGKQLILTSDKAPKDLAGLEERLLSR 292

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K      +++PD +    ++ K      I + + +  Y+   ++ ++   E  +  +  
Sbjct: 293 FKWGLSADLTVPDIETRMAILKKKMYQDGIELPEDVIEYVAHNIDNNVRELEGAMVSLLA 352

Query: 222 LALSRGMGITRSLAAEVLKE 241
            +      +  +LA ++LK 
Sbjct: 353 QSTLNKKEVDLALAKQMLKN 372


>gi|198283684|ref|YP_002220005.1| DnaA regulatory inactivator Hda [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198248205|gb|ACH83798.1| DnaA regulatory inactivator Hda [Acidithiobacillus ferrooxidans
           ATCC 53993]
          Length = 237

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 16/226 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLANI- 83
            Q           + +          A+  +    + P  + + L GP G GKS L    
Sbjct: 5   RQRILPLGVQAPATLEGYYPCP-NAAALHAVLKLVAEPQGLCLYLYGPGGVGKSHLLLGA 63

Query: 84  ------WSDKSRSTRFSNIAKSLDSI----LIDTRKPVLLEDIDLLDFN---DTQLFHII 130
                 W+          +   +  +     +     + L++I++       +T LF + 
Sbjct: 64  ASALAGWTPYMDCGDVPQLFNRIKDLEGFSSLVAAPLLCLDNIEVWAGQRDKETFLFDLY 123

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N        +L+  R  P      LPD  SR  A   V + LPDD     ++ +M   R 
Sbjct: 124 NERMSNGRPMLLAGRAAPRFLDWALPDWASRASACLQVALRLPDDTERMAILQEMAQRRG 183

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
           + I  + A Y+++   R     + L+  +D  +      +T     
Sbjct: 184 LQIGVEAAHYLLRHHARDPRTLDGLLTILDAGSWEHQREVTIPFIR 229


>gi|120596834|ref|YP_961408.1| chromosomal replication initiation protein [Shewanella sp. W3-18-1]
 gi|146291112|ref|YP_001181536.1| chromosomal replication initiation protein [Shewanella putrefaciens
           CN-32]
 gi|166215331|sp|A4Y1A4|DNAA_SHEPC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166215333|sp|A1RDX7|DNAA_SHESW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|120556927|gb|ABM22854.1| chromosomal replication initiator protein DnaA [Shewanella sp.
           W3-18-1]
 gi|145562802|gb|ABP73737.1| chromosomal replication initiator protein DnaA [Shewanella
           putrefaciens CN-32]
 gi|319424418|gb|ADV52492.1| chromosomal replication initiator protein DnaA [Shewanella
           putrefaciens 200]
          Length = 461

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 127 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 185

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +   +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 186 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 245

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 246 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 305

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 306 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 360


>gi|332883707|gb|EGK03987.1| chromosomal replication initiator protein DnaA [Dysgonomonas mossii
           DSM 22836]
          Length = 467

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWS 85
           F        + D+     + + A    ++    P +     + + G SG GK+ L +   
Sbjct: 126 FDSQLNNKYTFDNFFEGESNKLARTAGETITRNPGKTAFNPLFVHGTSGVGKTHLCHAIG 185

Query: 86  DK----------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
           +                       + + R++     ++         ++++DI  L   +
Sbjct: 186 NSIKEQYPEKRVLYVSAHLFKVQYADAGRYNTTNDFIN--FYQGIDVLIIDDIHELAGIE 243

Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                LFHI N +HQ +  L++T    P         L +R +     K+  PD     K
Sbjct: 244 KTQNTLFHIFNHLHQNNKQLILTCDKSPSELHGVEERLLTRFRWGLTTKVDNPDKQLRLK 303

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           ++        + I + +  YI + +  +    E ++  +   +L     I   LA  V+ 
Sbjct: 304 ILQNKILHDGLSIPEDVVDYIAENVTDNARDLEGIIVSIMAHSLVYNKEIDLPLARRVIG 363

Query: 241 ET 242
           + 
Sbjct: 364 QA 365


>gi|70725002|ref|YP_251916.1| chromosomal replication initiation protein [Staphylococcus
           haemolyticus JCSC1435]
 gi|123762366|sp|Q4LAL5|DNAA_STAHJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|68445726|dbj|BAE03310.1| chromosomal replication initiator protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 451

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 101/262 (38%), Gaps = 35/262 (13%)

Query: 16  QKNDQPKNKEEQLFFSFPRC------LGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV 66
           +K++ P   + Q+   +            + D  ++         A   +   P+     
Sbjct: 91  RKSNTPSEPQRQI-IEYGHEGTDQFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAQAYNP 149

Query: 67  VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------------ 109
           + + G  G GK+ L +       S++  +      ++   +  I + +            
Sbjct: 150 LFIYGGVGLGKTHLMHAIGHHVLSNQPNAKVLYTSSEKFTNDFIKSIRNNEPEAFREKYR 209

Query: 110 ---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRL 162
               +L++DI  +   +    + FH  N +HQ    +++++   P      L D L SR 
Sbjct: 210 NIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIA-KLEDRLRSRF 268

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   +V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   
Sbjct: 269 EWGLIVDITPPDYETRMAILQKKIEEENLEIPAEALNYIANQIQSNIRELEGALTRLLAY 328

Query: 223 ALSRGMGITRSLAAEVLKETQQ 244
           +  +G  IT  LAAE LK+  Q
Sbjct: 329 SKLQGRPITTELAAEALKDIIQ 350


>gi|113968347|ref|YP_732140.1| chromosomal replication initiation protein [Shewanella sp. MR-4]
 gi|123130898|sp|Q0HPD4|DNAA_SHESM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|113883031|gb|ABI37083.1| chromosomal replication initiator protein DnaA [Shewanella sp.
           MR-4]
          Length = 460

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 184

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +   +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 185 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 244

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 245 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 304

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 305 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 359


>gi|114045514|ref|YP_736064.1| chromosomal replication initiation protein [Shewanella sp. MR-7]
 gi|123131884|sp|Q0I0U8|DNAA_SHESR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|113886956|gb|ABI41007.1| chromosomal replication initiator protein DnaA [Shewanella sp.
           MR-7]
          Length = 460

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 184

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +   +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 185 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 244

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 245 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 304

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 305 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 359


>gi|218667999|ref|YP_002426314.1| hypothetical protein AFE_1901 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218520212|gb|ACK80798.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 236

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 16/226 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLANI- 83
            Q           + +          A+  +    + P  + + L GP G GKS L    
Sbjct: 4   RQRILPLGVQAPATLEGYYPCP-NAAALHAVLKLVAEPQGLCLYLYGPGGVGKSHLLLGA 62

Query: 84  ------WSDKSRSTRFSNIAKSLDSI----LIDTRKPVLLEDIDLLDFN---DTQLFHII 130
                 W+          +   +  +     +     + L++I++       +T LF + 
Sbjct: 63  ASALAGWTPYMDCGDVPQLFNRIKDLEGFSSLVAAPLLCLDNIEVWAGQRDKETFLFDLY 122

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N        +L+  R  P      LPD  SR  A   V + LPDD     ++ +M   R 
Sbjct: 123 NERMSNGRPMLLAGRAAPRFLDWALPDWASRASACLQVALRLPDDTERMAILQEMAQRRG 182

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
           + I  + A Y+++   R     + L+  +D  +      +T     
Sbjct: 183 LQIGVEAAHYLLRHHARDPRTLDGLLTILDAGSWEHQREVTIPFIR 228


>gi|152989754|ref|YP_001355476.1| chromosomal replication initiation protein [Nitratiruptor sp.
           SB155-2]
 gi|151421615|dbj|BAF69119.1| chromosome replication initiator protein DnaA [Nitratiruptor sp.
           SB155-2]
          Length = 443

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 90/234 (38%), Gaps = 24/234 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----K 87
               + ++ +V S+ + A     S    P +    + + G  G GK+ L +   +    K
Sbjct: 105 NPTYTFENFVVGSSNQFAYTAALSVAEKPGKAYNPLFIYGGVGLGKTHLLHAIGNFNIKK 164

Query: 88  SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHII 130
            +   ++ I + ++      R                +L++D+  L   +    + FH  
Sbjct: 165 EKVVIYATIEQFMNDFTYHLRNKTIERFREKYRQCDILLIDDVQFLSGKERTQEEFFHTF 224

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +H     +++T+   P         L SR +   +  I  P+ +    +I K      
Sbjct: 225 NELHNDKKQIVLTSDQHPKKIAGLEDRLKSRFEWGLIADIQPPELETKIAIIKKKCELDG 284

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           I +D ++  YI   M+ ++   E ++ K++  +      IT  LA  VL E ++
Sbjct: 285 INLDDEIVNYIASHMDSNIREIEGVIIKLNAYSSLVNQKITLDLAKNVLGELKK 338


>gi|114778882|ref|ZP_01453679.1| chromosomal replication initiator protein dnaA [Mariprofundus
           ferrooxydans PV-1]
 gi|114550851|gb|EAU53417.1| chromosomal replication initiator protein dnaA [Mariprofundus
           ferrooxydans PV-1]
          Length = 469

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 86/237 (36%), Gaps = 25/237 (10%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS----DK 87
               + ++ +V S  E    A + +   P      + L G  G GK+ L N  +     K
Sbjct: 136 DPRFTFENFIVGSGNEFCHAAAQAVAEKPGAIYNPLYLYGGVGLGKTHLINAVANALISK 195

Query: 88  SRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHI 129
           +         +   + LI   +                ++++DI  +   D    + FH 
Sbjct: 196 NNYRIAYRTGERFTNELIQAIRNGSTDNFRNQYRQVDVLIIDDIQFIAGKDRTQEEFFHT 255

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++++    +++T+   P      +  L SR     V  I  PD +    ++       
Sbjct: 256 FNALYEIKKQIILTSDRSPRDLTNLMERLRSRFNWGLVADIQPPDLETRLAILSSKAELA 315

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +D+ +A  +  R+  ++   E  + ++   A   G  I  + A  VL++    +
Sbjct: 316 GVHMDRDVANLLATRITNNVRELEGALTRLTAHATLTGRTIDVTFARHVLRDLLHEE 372


>gi|157368281|ref|YP_001476270.1| chromosomal replication initiation protein [Serratia proteamaculans
           568]
 gi|167016905|sp|A8G7Q2|DNAA_SERP5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157320045|gb|ABV39142.1| chromosomal replication initiator protein DnaA [Serratia
           proteamaculans 568]
          Length = 463

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 99/256 (38%), Gaps = 27/256 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69
           P +   D    + E L +        + D+ +   + + A          P      + L
Sbjct: 108 PSRPSWDNAAPQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFL 166

Query: 70  VGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRK 109
            G +G GK+ L +     I + K+ +            ++ K+L +  I+       +  
Sbjct: 167 YGGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVD 226

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI      +    + FH  N++ + +  +++T+  +P         L SR     
Sbjct: 227 ALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGL 286

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   
Sbjct: 287 TVAIEPPELETRVAILMKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 346

Query: 227 GMGITRSLAAEVLKET 242
           G  IT     E L++ 
Sbjct: 347 GRAITIDFVREALRDL 362


>gi|163855129|ref|YP_001629427.1| DnaA regulatory inactivator Hda [Bordetella petrii DSM 12804]
 gi|163258857|emb|CAP41156.1| Chromosomal replication initiator protein dnaA [Bordetella petrii]
          Length = 233

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 14/188 (7%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLL 119
           V L G +G G+S L    +    +        +     +            V ++D+  +
Sbjct: 41  VYLWGAAGCGRSHLLRGLAAVPGAMYIDAAQGAQALRQLAGADSAAAMPTVVAIDDVHRM 100

Query: 120 D-FNDTQLFHIINSIHQYDSS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           D      LF + N   +  ++     L +     P+S  +   DL +RL    V ++   
Sbjct: 101 DDARQAGLFALYNRWRECAATSRAFALAVAGDRAPLSMPLR-EDLRTRLGWDLVFRLEPL 159

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
            D      +    A+R + +  ++  +++   ER +     L+D +D  +L+ G  IT  
Sbjct: 160 SDADKRAALAAQAAERGLQLAPEVIQWMLTHRERDIRKLAALLDALDRYSLATGRPITIP 219

Query: 234 LAAEVLKE 241
           L   +L +
Sbjct: 220 LLRAMLAD 227


>gi|119773155|ref|YP_925895.1| chromosomal replication initiation protein [Shewanella amazonensis
           SB2B]
 gi|166215327|sp|A1S1G9|DNAA_SHEAM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|119765655|gb|ABL98225.1| chromosomal replication initiator protein DnaA [Shewanella
           amazonensis SB2B]
          Length = 457

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 123 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 181

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +   +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 182 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 241

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 242 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 301

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 302 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 356


>gi|238765484|ref|ZP_04626403.1| Chromosomal replication initiator protein dnaA [Yersinia
           kristensenii ATCC 33638]
 gi|238696308|gb|EEP89106.1| Chromosomal replication initiator protein dnaA [Yersinia
           kristensenii ATCC 33638]
          Length = 463

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 187

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 188 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 308 ENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362


>gi|24371608|ref|NP_715650.1| chromosomal replication initiation protein [Shewanella oneidensis
           MR-1]
 gi|38257603|sp|Q8EKT2|DNAA_SHEON RecName: Full=Chromosomal replication initiator protein DnaA
 gi|24345358|gb|AAN53095.1|AE015452_8 chromosomal replication initiator protein DnaA [Shewanella
           oneidensis MR-1]
          Length = 460

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 184

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +   +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 185 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 244

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 245 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 304

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 305 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 359


>gi|169632704|ref|YP_001706440.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii SDF]
 gi|239501016|ref|ZP_04660326.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii AB900]
 gi|260549334|ref|ZP_05823554.1| DnaA regulatory inactivator Hda [Acinetobacter sp. RUH2624]
 gi|169151496|emb|CAP00259.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii]
 gi|260407740|gb|EEX01213.1| DnaA regulatory inactivator Hda [Acinetobacter sp. RUH2624]
          Length = 232

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 21/228 (9%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D          V  +    +       + G +G+GKS L +   
Sbjct: 2   RQLQLDIEPQLDARISDF-SGPGWGHVVDAVRQLHAGLVNRFYIYGGAGTGKSHLLSAIC 60

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFNDT-----------QLFHIINSI 133
           D       S I  SL  +L    + +  LE  DL+  +D             +FH++N  
Sbjct: 61  DSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDDIESISGVPHWQKAVFHLMN-- 118

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190
             ++  L+ ++R  P+   + LPDL SRL  A  VK+  P          ++  + A R 
Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PSGSLYADRYALVTSVMARRG 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           I  D+++  Y++           + V +++ L       ++ +   ++
Sbjct: 176 IHFDQQIVDYLLLHGPHQASVLLQTVAQLEKLLKGEKTKLSNATLRQI 223


>gi|238759584|ref|ZP_04620746.1| Chromosomal replication initiator protein dnaA [Yersinia aldovae
           ATCC 35236]
 gi|238702243|gb|EEP94798.1| Chromosomal replication initiator protein dnaA [Yersinia aldovae
           ATCC 35236]
          Length = 462

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 186

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 187 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 307 ENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 361


>gi|294138802|ref|YP_003554780.1| chromosomal replication initiator protein DnaA [Shewanella violacea
           DSS12]
 gi|293325271|dbj|BAJ00002.1| chromosomal replication initiator protein DnaA [Shewanella violacea
           DSS12]
          Length = 462

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 91/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                 ++ +   +       A+++ ++ P      + L G +G GK+ L +   +    
Sbjct: 128 NPAYQFENFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNAIIK 186

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDID---LLDFNDTQLF 127
                            ++ K+L +  I+       +   + ++DI      D +  + F
Sbjct: 187 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 246

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 247 HTFNALLEGNHQVILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 306

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  + +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 307 ESGVNLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 361


>gi|117918468|ref|YP_867660.1| chromosomal replication initiation protein [Shewanella sp. ANA-3]
 gi|166215332|sp|A0KR35|DNAA_SHESA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|117610800|gb|ABK46254.1| chromosomal replication initiator protein DnaA [Shewanella sp.
           ANA-3]
          Length = 460

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 91/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD---- 86
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +   +    
Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 184

Query: 87  ---------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDID---LLDFNDTQLF 127
                            ++ K+L +  I+       +   + ++DI      D +  + F
Sbjct: 185 NNPDAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 244

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 245 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 304

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 305 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 359


>gi|91228348|ref|ZP_01262276.1| chromosomal replication initiation protein [Vibrio alginolyticus
           12G01]
 gi|262392783|ref|YP_003284637.1| chromosomal replication initiator protein dnaA [Vibrio sp. Ex25]
 gi|269965278|ref|ZP_06179399.1| chromosomal replication initiation protein [Vibrio alginolyticus
           40B]
 gi|91188108|gb|EAS74412.1| chromosomal replication initiation protein [Vibrio alginolyticus
           12G01]
 gi|262336377|gb|ACY50172.1| chromosomal replication initiator protein dnaA [Vibrio sp. Ex25]
 gi|269830079|gb|EEZ84307.1| chromosomal replication initiation protein [Vibrio alginolyticus
           40B]
          Length = 468

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
                 D+ +   + +    A R +   P      + L G +G GK+ L +   +     
Sbjct: 134 NPKHKFDNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDN 193

Query: 88  ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128
                           ++ K+L +  I+       +   +L++DI      +    + FH
Sbjct: 194 NPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 253

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   D
Sbjct: 254 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAED 313

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 314 HQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|293393721|ref|ZP_06638029.1| DNA-directed DNA replication initiator protein [Serratia odorifera
           DSM 4582]
 gi|291423765|gb|EFE96986.1| DNA-directed DNA replication initiator protein [Serratia odorifera
           DSM 4582]
          Length = 440

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 99/256 (38%), Gaps = 27/256 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69
           P +   D    + E L +        + D+ +   + + A          P      + L
Sbjct: 85  PSRPSWDNAAPQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFL 143

Query: 70  VGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRK 109
            G +G GK+ L +     I + K+ +            ++ K+L +  I+       +  
Sbjct: 144 YGGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVD 203

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI      +    + FH  N++ + +  +++T+  +P         L SR     
Sbjct: 204 ALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGL 263

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   
Sbjct: 264 TVAIEPPELETRVAILMKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 323

Query: 227 GMGITRSLAAEVLKET 242
           G  IT     E L++ 
Sbjct: 324 GRAITIDFVREALRDL 339


>gi|127510936|ref|YP_001092133.1| chromosomal replication initiation protein [Shewanella loihica
           PV-4]
 gi|166215330|sp|A3Q8S6|DNAA_SHELP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|126636231|gb|ABO21874.1| chromosomal replication initiator protein DnaA [Shewanella loihica
           PV-4]
          Length = 459

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 125 NPTYQFDNFVEGKSNQLGKAAALQVSEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 183

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +   +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 184 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 243

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 244 HTFNALLEGNHQVILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 303

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 304 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 358


>gi|167470924|ref|ZP_02335628.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           FV-1]
          Length = 355

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%)

Query: 23  NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77
           N   Q  L +        + D+ +   + + A          P      + L G +G GK
Sbjct: 7   NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 66

Query: 78  SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117
           + L +     I + K+ +            ++ K+L +  I+       +   +L++DI 
Sbjct: 67  THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 126

Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
                +    + FH  N++ + +  +++T+  +P         L SR      V I  P+
Sbjct: 127 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 186

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT   
Sbjct: 187 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 246

Query: 235 AAEVLKET 242
             E L++ 
Sbjct: 247 VREALRDL 254


>gi|268315579|ref|YP_003289298.1| chromosomal replication initiator protein DnaA [Rhodothermus
           marinus DSM 4252]
 gi|262333113|gb|ACY46910.1| chromosomal replication initiator protein DnaA [Rhodothermus
           marinus DSM 4252]
          Length = 503

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 80/235 (34%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
               + +  +           A+ +     +      ++ G  G GK+ L     + +R 
Sbjct: 165 DPKYTFERFIEGDCNRLARSAALAIAQQPGATSFNPFLVYGGVGLGKTHLIQAIGNYARQ 224

Query: 91  TRFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLF 127
              +   + + S                    +       ++++DI      +    + F
Sbjct: 225 HHTAETIRYVSSEQFTNEFVQAIQHNRINEFSLFYRHIDLLIVDDIQFFGGKEKTQEEFF 284

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++HQ    ++++A   P         L SR +   +  +  PD +    ++ +   
Sbjct: 285 HIFNALHQTGKQIVLSADRPPKDIPGIEERLLSRFQWGLMADVQPPDLETRIAILRRKAE 344

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D  I +   +  +I   ++ +    E  + ++   A  +   I  +LA E L++ 
Sbjct: 345 DEGIELGDDVIEFIAHHVKSNFRELEGALLRLVAHAAYQRRDIDLALAREALRDL 399


>gi|169795049|ref|YP_001712842.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii AYE]
 gi|184159167|ref|YP_001847506.1| DNA replication initiation ATPase [Acinetobacter baumannii ACICU]
 gi|213158289|ref|YP_002320340.1| DnaA family protein [Acinetobacter baumannii AB0057]
 gi|215482598|ref|YP_002324790.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii
           AB307-0294]
 gi|260556532|ref|ZP_05828750.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii ATCC
           19606]
 gi|301347427|ref|ZP_07228168.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB056]
 gi|301513662|ref|ZP_07238899.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB058]
 gi|301596500|ref|ZP_07241508.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB059]
 gi|332851104|ref|ZP_08433213.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013150]
 gi|332869623|ref|ZP_08438834.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013113]
 gi|332875994|ref|ZP_08443780.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6014059]
 gi|169147976|emb|CAM85839.1| putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii AYE]
 gi|183210761|gb|ACC58159.1| ATPase involved in DNA replication initiation [Acinetobacter
           baumannii ACICU]
 gi|193078085|gb|ABO13020.2| putative chromosomal replication initiator DnaA-type [Acinetobacter
           baumannii ATCC 17978]
 gi|213057449|gb|ACJ42351.1| DnaA family protein [Acinetobacter baumannii AB0057]
 gi|213987719|gb|ACJ58018.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii
           AB307-0294]
 gi|260409791|gb|EEX03091.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii ATCC
           19606]
 gi|322509081|gb|ADX04535.1| Putative chromosomal replication initiator, DnaA-type
           [Acinetobacter baumannii 1656-2]
 gi|323519111|gb|ADX93492.1| DNA replication initiation ATPase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730268|gb|EGJ61593.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013150]
 gi|332732670|gb|EGJ63902.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013113]
 gi|332735860|gb|EGJ66901.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6014059]
          Length = 232

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 21/228 (9%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D          V  +    +       + G +G+GKS L +   
Sbjct: 2   RQLQLDIEPQLDARISDF-SGPGWGHVVDAVRQLHAGLVNRFYIYGGAGTGKSHLLSAIC 60

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFNDT-----------QLFHIINSI 133
           D       S I  SL  +L    + +  LE  DL+  +D             +FH++N  
Sbjct: 61  DSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDDIESISGVPHWQKAVFHLMN-- 118

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190
             ++  L+ ++R  P+   + LPDL SRL  A  VK+  P          ++  + A R 
Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PSGSLYADRYALVTSVMARRG 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           I  D+++  Y++           + V +++ L       ++ +   ++
Sbjct: 176 IHFDQQIVDYLLLHGPHQASILLQTVAQLEKLLKGEKTKLSNATLRQI 223


>gi|37524033|ref|NP_927377.1| chromosomal replication initiation protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|61212694|sp|Q7NAD3|DNAA_PHOLL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|36783456|emb|CAE12296.1| Chromosomal replication initiator protein DnaA [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 462

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 93/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMA 186

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 187 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 307 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 361


>gi|269925124|ref|YP_003321747.1| chromosomal replication initiator protein DnaA [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269788784|gb|ACZ40925.1| chromosomal replication initiator protein DnaA [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 456

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 93/236 (39%), Gaps = 26/236 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIW----- 84
           P     + ++ +V S+   A     +    P+     + L G  G GK+ L +       
Sbjct: 118 PLNPRYTFENFIVGSSNRMAHAACMAVAEHPAEAYNPLFLYGGVGLGKTHLLHAIGNHAL 177

Query: 85  ------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQL 126
                       S++  +   + I +          + +   L++DI  +   +    + 
Sbjct: 178 KLKPYLRVLYVSSEQFTNDLINAIREHRTEEFRARYRSIDILLIDDIQFIAGKESTQEEF 237

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N +H  +  ++MT+   P +       L SR +   + +++LPD +    ++    
Sbjct: 238 FHTFNHLHGANKQIVMTSDRPPKAIATLQDRLRSRFEGGLMTEVNLPDLETRIAILRIKA 297

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ + +   +   I ++++ ++   E  ++ +  LA   G  IT + AAE L +T
Sbjct: 298 ENKGVDLPDDVLELIARKVQSNIRELEGALNSIVALARLTGEPITLATAAEALNDT 353


>gi|114561189|ref|YP_748702.1| chromosomal replication initiation protein [Shewanella
           frigidimarina NCIMB 400]
 gi|122301225|sp|Q08A51|DNAA_SHEFN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|114332482|gb|ABI69864.1| chromosomal replication initiator protein DnaA [Shewanella
           frigidimarina NCIMB 400]
          Length = 461

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 127 NPTYQFDNFVEGKSNQLGKAAALQVSEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 185

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +   +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 186 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 245

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 246 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 305

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 306 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 360


>gi|317131009|ref|YP_004090323.1| chromosomal replication initiator protein DnaA [Ethanoligenens
           harbinense YUAN-3]
 gi|315468988|gb|ADU25592.1| chromosomal replication initiator protein DnaA [Ethanoligenens
           harbinense YUAN-3]
          Length = 447

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 38/272 (13%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDS 58
           N  +  Y F V        P++ E+            + D  +V S+ + A      + S
Sbjct: 86  NGYRSQYDFVV-----TQNPEDIEQTYA---SADYEYTFDTFIVGSSNKFAHAASMAVAS 137

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDT------ 107
            P+     + + G SG GK+ L +    +       S       +   + L+++      
Sbjct: 138 TPAMAYNPLFIYGGSGLGKTHLLHAIRHEILKNNPNSKILYIKGEDFTNELVESIRQNSQ 197

Query: 108 ---------RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                       +L++DI  +   +    + FH  NS+++    +++T+   P       
Sbjct: 198 IQFRNKYRQTDVLLVDDIQFVAGKESTQEEFFHTFNSLYESKKQIVLTSDRPPKEIQTLE 257

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L +R +   +  I  PD +    +I +      I I  ++  YI  R++ ++   E  
Sbjct: 258 DRLRTRFEWGLLADIQPPDFETRLAIIRRKAELLGINIPDEVDEYIANRLKNNIRQLEGA 317

Query: 216 VDKMDNLALSRGMGITRSLA----AEVLKETQ 243
           V K+    L  G   + ++A     ++L + Q
Sbjct: 318 VKKIKAYNLLTGDPPSIAIAQNAIRDILNDNQ 349


>gi|157959831|ref|YP_001499865.1| chromosomal replication initiation protein [Shewanella pealeana
           ATCC 700345]
 gi|189083279|sp|A8GYE3|DNAA_SHEPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157844831|gb|ABV85330.1| chromosomal replication initiator protein DnaA [Shewanella pealeana
           ATCC 700345]
          Length = 461

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 99/267 (37%), Gaps = 42/267 (15%)

Query: 17  KNDQPKNKE-EQLFFSFPR-------------CLGISRDDLLVHSAI----EQAVRLIDS 58
           +  +P  +E  +  F+ P                    D+ +   +       A+++ ++
Sbjct: 95  RTSRPVTREVTKPSFNTPHAEPMANANHRSNINPTYQFDNFVEGKSNQLGKAAALQVAEN 154

Query: 59  WPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
            P      + L G +G GK+ L +     I  +   +      ++     ++   +   +
Sbjct: 155 -PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAI 213

Query: 114 ED-------IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           E+       +D L  +D            + FH  N++ + +  +++T+  +P       
Sbjct: 214 EEFKRYYRSVDALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDKYPKEIDGVE 273

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L SR      V I  P+ +    ++++   +  I +  ++A +I +R+  ++   E  
Sbjct: 274 DRLKSRFGWGLTVAIEPPELETRVAILMRKAQESGINLPDEVAFFIAKRLRSNVRELEGA 333

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKET 242
           ++++   A   G  IT     E L++ 
Sbjct: 334 LNRVIANANFTGRPITIDFVREALRDL 360


>gi|163788605|ref|ZP_02183050.1| chromosomal replication initiator protein [Flavobacteriales
           bacterium ALC-1]
 gi|159875842|gb|EDP69901.1| chromosomal replication initiator protein [Flavobacteriales
           bacterium ALC-1]
          Length = 475

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 93/259 (35%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          S ++ L   +   A     +  + P      
Sbjct: 125 FVIPGIRNV----KIESQL------NPSYSFENFLEGDSNRLARNAGIAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIDSVKKNNRNDFIHFY 234

Query: 109 ---KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++D+  L          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QIIDVLIIDDVQFLSGKTGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++        + +  ++  Y+ + ++ ++   E  +  +   
Sbjct: 295 KWGLSAELQTPDFETRVSILKNKLYRDGVEMPDEIVEYVAKHIKTNVRELEGAIISLIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           +      IT +LA +++++
Sbjct: 355 SSFNKKEITINLAKDIVEK 373


>gi|320539854|ref|ZP_08039513.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Serratia symbiotica str.
           Tucson]
 gi|320030040|gb|EFW12060.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Serratia symbiotica str.
           Tucson]
          Length = 460

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 99/256 (38%), Gaps = 27/256 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69
           P +   D    + E L +        + D+ +   + + A          P      + L
Sbjct: 105 PSRPSWDNAAPQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFL 163

Query: 70  VGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRK 109
            G +G GK+ L +     I + K+ +            ++ K+L +  I+       +  
Sbjct: 164 YGGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVD 223

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI      +    + FH  N++ + +  +++T+  +P         L SR     
Sbjct: 224 ALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGL 283

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   
Sbjct: 284 TVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 343

Query: 227 GMGITRSLAAEVLKET 242
           G  IT     E L++ 
Sbjct: 344 GRAITIDFVREALRDL 359


>gi|85057979|ref|YP_453681.1| chromosomal replication initiation protein [Sodalis glossinidius
           str. 'morsitans']
 gi|123725464|sp|Q2NX49|DNAA_SODGM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|84778499|dbj|BAE73276.1| chromosomal replication initiator protein DnaA [Sodalis
           glossinidius str. 'morsitans']
          Length = 464

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 101/265 (38%), Gaps = 35/265 (13%)

Query: 13  PDKQKNDQPK-------NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           P +    +P+       N   Q  L +        + D+ +   + + A          P
Sbjct: 99  PSQAAVARPRPSRPSWDNAPVQPELSYRSNVNPKHNFDNFVEGKSNQLARAAARQVADNP 158

Query: 64  SRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID- 106
                 + L G +G GK+ L +     I + K+ +            ++ K+L +  I+ 
Sbjct: 159 GGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEE 218

Query: 107 ------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                 +   +L++DI      +    + FH  N++ + +  +++T+  +P         
Sbjct: 219 FKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDR 278

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++
Sbjct: 279 LKSRFGWGLTVAIEPPELETRVAILMKKADENAIRLPGEVAFFIAKRLRSNVRELEGALN 338

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
           ++   A   G  IT     E L++ 
Sbjct: 339 RVIANANFTGRAITIDFVREALRDL 363


>gi|258513367|ref|YP_003189589.1| chromosomal replication initiator protein DnaA [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777072|gb|ACV60966.1| chromosomal replication initiator protein DnaA [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 446

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 90/237 (37%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-----D 86
               + D  +V  +   A     +    P++    + + G  G GK+ L +  +      
Sbjct: 113 KSKYTFDTFVVGDSNRFAHAACFAVAESPAKSYNPLFIYGGVGLGKTHLMHAIAHYILTQ 172

Query: 87  KSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFH 128
            + S      ++   + LI++                  +L++DI  L   +    + FH
Sbjct: 173 GTGSKVVYVTSEKFTNELINSFRDDQTIKFRNKYRSMNILLIDDIQFLAGKERTQEEFFH 232

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 233 TFNTLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQAPDYETRIAILRKKAQV 292

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +++I  ++  +I  +++ ++   E  + ++   A      +   LA +VLK+    
Sbjct: 293 DKLYIPDEVINFIATKIKSNIRELEGCLIRIIAYASFTKKEMNVELAEQVLKDILNP 349


>gi|212712612|ref|ZP_03320740.1| hypothetical protein PROVALCAL_03707 [Providencia alcalifaciens DSM
           30120]
 gi|212684828|gb|EEB44356.1| hypothetical protein PROVALCAL_03707 [Providencia alcalifaciens DSM
           30120]
          Length = 491

 Score =  124 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I  
Sbjct: 156 VNPKHTFDNFVEGKSNQLARAAARQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMQ 215

Query: 86  DKSRSTRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 216 HKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 275

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 276 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 335

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 336 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 390


>gi|225016760|ref|ZP_03705952.1| hypothetical protein CLOSTMETH_00672 [Clostridium methylpentosum
           DSM 5476]
 gi|224950428|gb|EEG31637.1| hypothetical protein CLOSTMETH_00672 [Clostridium methylpentosum
           DSM 5476]
          Length = 454

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 26/230 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWSDK------- 87
            + D  +V S+   A     +     S     + + GPSG GK+ L    S +       
Sbjct: 121 YTFDTFIVGSSNTFAYAACKAVAQQQSGAYNPLFIYGPSGLGKTHLLMAISHEIKRQNPD 180

Query: 88  SRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFHIIN 131
           +     +  A + + I    R+              +L++DI  L        + F+  N
Sbjct: 181 TNILYINGEAFANELITAIGRQATNEFREKYRRVDILLMDDIQFLAGKTQTQEEFFYTFN 240

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
            +HQ    +++T+   P         L +R +   +  IS PD +    +I +      I
Sbjct: 241 DLHQVGKQIVLTSDRPPKDIKTLEERLRTRFEWGLLADISPPDFETRIAIIRRKAQLLDI 300

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +  ++A +I  R++ ++   E  V K+    L  G   + S+A  V+++
Sbjct: 301 EMPDEVAEFIANRLKNNIRQLEGAVKKIKAYKLLAGSPPSISMAQTVIRD 350


>gi|330995967|ref|ZP_08319861.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT
           11841]
 gi|329573964|gb|EGG55542.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT
           11841]
          Length = 468

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 97/263 (36%), Gaps = 37/263 (14%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVI 68
           P   +   P++ + QL          S ++ +   + +        + +         + 
Sbjct: 116 PSPLQAPMPQDLDPQL------NRNYSFENFIEGVSNKLPRSVGQAIAEHPKQSTFNPLF 169

Query: 69  LVGPSGSGKSCL---------------------ANIWSDK-SRSTRFSNIAKSLDSILID 106
           + G SG GK+ L                     A+++  + + S R + +   ++     
Sbjct: 170 IYGASGVGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFIN--FYQ 227

Query: 107 TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           T   ++++D+     L       FHI N +HQ    L++T+   P +       L +R K
Sbjct: 228 TIDVLIIDDVQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERLLTRFK 287

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + ++  P+      ++        + I +++  ++ + +  S+   E +V+ +   +
Sbjct: 288 WGLLAELEKPNQQLRHDILENKIRQDGLKIPEEVIDFVSENVNDSVRELEGIVNSLMAYS 347

Query: 224 LSRGMGITRSLAAEVLKETQQCD 246
           +     I   LA ++LK   + +
Sbjct: 348 VVWNRDIDLPLAEQILKRAVKVE 370


>gi|327398174|ref|YP_004339043.1| Chromosomal replication initiator protein dnaA [Hippea maritima DSM
           10411]
 gi|327180803|gb|AEA32984.1| Chromosomal replication initiator protein dnaA [Hippea maritima DSM
           10411]
          Length = 417

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 84/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
                 ++ +V  + + A      +   P+     + + G  G GK+ L +   +     
Sbjct: 82  NSKYGFENFVVGPSNQLAYAASVAVSENPAKAYNPLFIYGGVGLGKTHLLHAIGNSIKKN 141

Query: 88  -SRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDF---NDTQLFH 128
              +      ++   + LI++                  +L++DI  +      + + FH
Sbjct: 142 NPNARVLYISSEEFTNELINSIQYKKMTQFRNKYRNLDCLLIDDIQFISKKERTEEEFFH 201

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++T+   P         L SR     +V I  P+ +    +I K    
Sbjct: 202 TFNALYESQKQIIITSDKPPNEIPDIENRLKSRFSWGLIVDIQPPELETRIAIIRKKAEL 261

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I +++  +I   +  ++   E  + K+          +T +L   +L++
Sbjct: 262 FNLEISQEIIEFIASSISSNVREIEGALIKISAYKSIMRKPVTLNLVKSILQD 314


>gi|91216500|ref|ZP_01253466.1| chromosomal replication initiation protein [Psychroflexus torquis
           ATCC 700755]
 gi|91185294|gb|EAS71671.1| chromosomal replication initiation protein [Psychroflexus torquis
           ATCC 700755]
          Length = 476

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 99/266 (37%), Gaps = 32/266 (12%)

Query: 9   SFFVPDKQKNDQPKNKE-----EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           S   P +QKN + +N         L          + D+ L  ++   A     +  + P
Sbjct: 109 SIDFPSRQKNPELRNPFVIPGIRNLKIDSQLNSNYTFDNFLEGTSNRLARSASLAVANKP 168

Query: 64  SRV----VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDS 102
                  +++ G  G GK+ LA+                   +DK        ++K+  +
Sbjct: 169 GGTSFNPLLIFGGVGLGKTHLAHAIGLQVKDKFPDKTVLYISADKFTQQHIDAVSKNNRN 228

Query: 103 ILIDTRKPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             I   + V   +++DI L+          FHI N +HQ    +++T+   PV       
Sbjct: 229 DFIHFYQIVDVLIVDDIQLISGKKGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIQQ 288

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR K     +++ PD +   K+I     +  + +  ++  Y+  R+  ++   E  +
Sbjct: 289 RLLSRFKWGLSAELAQPDFETRIKIIKNKLYNDGVEMADEILDYVASRITANIRELEGAI 348

Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242
             +   +      IT  LA +++K  
Sbjct: 349 ISLIAHSTFSKKEITIDLAEQIVKNY 374


>gi|261346742|ref|ZP_05974386.1| DNA biosynthesis protein [Providencia rustigianii DSM 4541]
 gi|282565142|gb|EFB70677.1| DNA biosynthesis protein [Providencia rustigianii DSM 4541]
          Length = 465

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I  
Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMQ 189

Query: 86  DKSRSTRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 190 HKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 310 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 364


>gi|260771047|ref|ZP_05879975.1| chromosomal replication initiator protein dnaA [Vibrio furnissii
           CIP 102972]
 gi|260613936|gb|EEX39127.1| chromosomal replication initiator protein dnaA [Vibrio furnissii
           CIP 102972]
 gi|315178626|gb|ADT85540.1| chromosomal replication initiation protein [Vibrio furnissii NCTC
           11218]
          Length = 468

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
                 ++ +   + +    A R +   P      + L G +G GK+ L +   +     
Sbjct: 134 NPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDN 193

Query: 88  ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128
                           ++ K+L +  I+       +   +L++DI      +    + FH
Sbjct: 194 NPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 253

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   D
Sbjct: 254 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAED 313

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 314 HQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|314934960|ref|ZP_07842319.1| DNA replication initiator protein, ATPase [Staphylococcus caprae
           C87]
 gi|313652890|gb|EFS16653.1| DNA replication initiator protein, ATPase [Staphylococcus caprae
           C87]
          Length = 451

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 92/233 (39%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S++  + 
Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNQPSAK 179

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  LAAE LK+  Q 
Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDIIQA 351


>gi|223043484|ref|ZP_03613530.1| chromosomal replication initiator protein DnaA [Staphylococcus
           capitis SK14]
 gi|222443273|gb|EEE49372.1| chromosomal replication initiator protein DnaA [Staphylococcus
           capitis SK14]
          Length = 450

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 92/233 (39%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S++  + 
Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNQPSAK 179

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  LAAE LK+  Q 
Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDIIQA 351


>gi|28896785|ref|NP_796390.1| chromosomal replication initiation protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260876543|ref|ZP_05888898.1| chromosomal replication initiator protein DnaA [Vibrio
           parahaemolyticus AN-5034]
 gi|31340039|sp|Q87TQ7|DNAA_VIBPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|28804993|dbj|BAC58274.1| chromosomal DNA replication initiator DnaA [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308090368|gb|EFO40063.1| chromosomal replication initiator protein DnaA [Vibrio
           parahaemolyticus AN-5034]
 gi|328471238|gb|EGF42140.1| chromosomal replication initiation protein [Vibrio parahaemolyticus
           10329]
          Length = 468

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
                 D+ +   + +    A R +   P      + L G +G GK+ L +   +     
Sbjct: 134 NPKHKFDNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDN 193

Query: 88  ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128
                           ++ K+L +  I+       +   +L++DI      +    + FH
Sbjct: 194 NPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 253

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   D
Sbjct: 254 TFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAED 313

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 314 HQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|71278268|ref|YP_266783.1| chromosomal replication initiator protein DnaA [Colwellia
           psychrerythraea 34H]
 gi|123761122|sp|Q48AS7|DNAA_COLP3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|71144008|gb|AAZ24481.1| chromosomal replication initiator protein DnaA [Colwellia
           psychrerythraea 34H]
          Length = 461

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 89/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI------- 83
             L  + ++ +   + + A          P      + + G +G GK+ L +        
Sbjct: 126 VRLNYTFENFVEGKSNQLARAAASQVADNPGTAYNPLFIYGGTGLGKTHLLHAVGNGILL 185

Query: 84  ------WSDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                  +         ++ ++L +  ++       +   +L++DI      +    + F
Sbjct: 186 NKPNAKIAYMHSERFVQDMVRALQNNAMEKFKQYYRSVDALLIDDIQFFAGKERTQEEFF 245

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      + I  P+ +    ++ +   
Sbjct: 246 HTFNALLEGNQQVILTSDRYPKEINGVDDRLKSRFGWGLTLAIEPPELETRVAILKRKAQ 305

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 306 ESQINLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 360


>gi|212632925|ref|YP_002309450.1| chromosomal replication initiation protein [Shewanella
           piezotolerans WP3]
 gi|226735846|sp|B8CH71|DNAA_SHEPW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|212554409|gb|ACJ26863.1| Chromosomal replication initiator protein DnaA [Shewanella
           piezotolerans WP3]
          Length = 461

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 91/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 127 NPTYQFDNFVEGKSNQLGKAAALQVSEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 185

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +K  +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 186 NKPDAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 245

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 246 HTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 305

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 306 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 360


>gi|1352278|sp|P29440|DNAA_SERMA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|407186|gb|AAA02924.1|AAA02924 DnaA [Serratia marcescens]
          Length = 464

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 97/250 (38%), Gaps = 27/250 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75
           D    + E L +        + D+ +   + + A          P      + L G +G 
Sbjct: 115 DNAAAQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 173

Query: 76  GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115
           GK+ L +     I + K+ +            ++ K+L +  I+       +   +L++D
Sbjct: 174 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 233

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I      +    + FH  N++ + +  +++T+  +P         L SR      V I  
Sbjct: 234 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 293

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT 
Sbjct: 294 PELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 353

Query: 233 SLAAEVLKET 242
               E L++ 
Sbjct: 354 DFVREALRDL 363


>gi|238797845|ref|ZP_04641337.1| Chromosomal replication initiator protein dnaA [Yersinia mollaretii
           ATCC 43969]
 gi|238718261|gb|EEQ10085.1| Chromosomal replication initiator protein dnaA [Yersinia mollaretii
           ATCC 43969]
          Length = 463

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 188 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 308 ENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362


>gi|238750289|ref|ZP_04611791.1| Chromosomal replication initiator protein dnaA [Yersinia rohdei
           ATCC 43380]
 gi|238711522|gb|EEQ03738.1| Chromosomal replication initiator protein dnaA [Yersinia rohdei
           ATCC 43380]
          Length = 462

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 96/250 (38%), Gaps = 28/250 (11%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75
             P   E  L +        + D+ +   + + A          P      + L G +G 
Sbjct: 114 SSPAQPE--LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 171

Query: 76  GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115
           GK+ L +     I + K+ +            ++ K+L +  I+       +   +L++D
Sbjct: 172 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I      +    + FH  N++ + +  +++T+  +P         L SR      V I  
Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT 
Sbjct: 292 PELETRVAILMKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 351

Query: 233 SLAAEVLKET 242
               E L++ 
Sbjct: 352 DFVREALRDL 361


>gi|332877991|ref|ZP_08445721.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683953|gb|EGJ56820.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 468

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 97/263 (36%), Gaps = 37/263 (14%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVI 68
           P   +   P++ + QL          S ++ +   + +        + +         + 
Sbjct: 116 PSPLQAPMPQDLDPQL------NRNYSFENFIEGVSNKLPRSVGQAIAEHPKQSTFNPLF 169

Query: 69  LVGPSGSGKSCL---------------------ANIWSDK-SRSTRFSNIAKSLDSILID 106
           + G SG GK+ L                     A+++  + + S R + +   ++     
Sbjct: 170 IYGASGVGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFIN--FYQ 227

Query: 107 TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           T   ++++D+     L       FHI N +HQ    L++T+   P +       L +R K
Sbjct: 228 TIDVLIIDDVQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERLLTRFK 287

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + ++  P+      ++        + I +++  ++ + +  S+   E +V+ +   +
Sbjct: 288 WGLLAELEKPNQQLRHDILENKIRQDGLKIPEEVIDFVSENVNDSVRELEGIVNSLMAYS 347

Query: 224 LSRGMGITRSLAAEVLKETQQCD 246
           +     I   LA ++LK   + +
Sbjct: 348 VVWNRDIDLPLAEQILKRAVKQE 370


>gi|308047723|ref|YP_003911289.1| chromosomal replication initiator protein DnaA [Ferrimonas
           balearica DSM 9799]
 gi|307629913|gb|ADN74215.1| chromosomal replication initiator protein DnaA [Ferrimonas
           balearica DSM 9799]
          Length = 468

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 92/257 (35%), Gaps = 27/257 (10%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68
           VP      +P     Q             D+ +   + + A          P      + 
Sbjct: 112 VPASPVRTEPPASSNQ-SVRSNINPNYQFDNFVEGKSNQLARAAASQVADNPGGAYNPLF 170

Query: 69  LVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSLDSILID-------TR 108
           L G +G GK+ L +   +                     ++ K+L +  I        + 
Sbjct: 171 LYGGTGLGKTHLLHAVGNGIMKRKPNAKVVYMHSERFVQDMVKALQNNAIAEFKRYYRSV 230

Query: 109 KPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI      D +  + FH  N++ + +  +++T+  +P         L SR    
Sbjct: 231 DALLIDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWG 290

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             V I  P+ +    ++++   +  I +  ++A +I +R+  ++   E  ++++   A  
Sbjct: 291 LTVAIEPPELETRVAILMRKAEESNIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANF 350

Query: 226 RGMGITRSLAAEVLKET 242
            G  IT     E L++ 
Sbjct: 351 TGRPITIDFVREALRDL 367


>gi|238754004|ref|ZP_04615363.1| Chromosomal replication initiator protein dnaA [Yersinia ruckeri
           ATCC 29473]
 gi|238707756|gb|EEQ00115.1| Chromosomal replication initiator protein dnaA [Yersinia ruckeri
           ATCC 29473]
          Length = 463

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 188 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 308 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362


>gi|295115474|emb|CBL36321.1| chromosomal replication initiator protein DnaA [butyrate-producing
           bacterium SM4/1]
          Length = 456

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 94/263 (35%), Gaps = 29/263 (11%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVI 68
           V + Q      + ++Q+  +       + D  +V +    A      +   P      + 
Sbjct: 94  VSENQLLSHSTDVDQQVIQNANLNPRYTFDTFVVGANNNLAHAASLAVAESPGEIYNPLF 153

Query: 69  LVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT---------------- 107
           + G  G GK+ L +     I  +  ++      ++   + LID                 
Sbjct: 154 IYGGVGLGKTHLMHSIGHFILQNNPKAKILYVTSEKFTNELIDAIRNKNNISTTEFREKY 213

Query: 108 --RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                +L++DI  +   +    + FH  N++++    +++++   P         L SR 
Sbjct: 214 RNNDVLLIDDIQFIIGKESTQEEFFHTFNALYEAKKQIIISSDKPPKEIETLEERLRSRF 273

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    V I  PD +    ++ K        ID ++  YI   ++ ++   E  + K+  L
Sbjct: 274 EWGLTVDIQSPDYETRMAILRKKEELEGYNIDNEVIKYIATHVKSNIRELEGALTKIVAL 333

Query: 223 ALSRGMGITRSLAAEVLKETQQC 245
           +      IT  LA E LK+    
Sbjct: 334 SKLNKREITTELAEEALKDLISP 356


>gi|283797185|ref|ZP_06346338.1| DNA replication initiator protein, ATPase [Clostridium sp. M62/1]
 gi|291075143|gb|EFE12507.1| DNA replication initiator protein, ATPase [Clostridium sp. M62/1]
 gi|295090278|emb|CBK76385.1| chromosomal replication initiator protein DnaA [Clostridium cf.
           saccharolyticum K10]
          Length = 456

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 94/263 (35%), Gaps = 29/263 (11%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVI 68
           V + Q      + ++Q+  +       + D  +V +    A      +   P      + 
Sbjct: 94  VSENQLLSHSTDVDQQVIQNANLNPRYTFDTFVVGANNNLAHAASLAVAESPGEIYNPLF 153

Query: 69  LVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT---------------- 107
           + G  G GK+ L +     I  +  ++      ++   + LID                 
Sbjct: 154 IYGGVGLGKTHLMHSIGHFILQNNPKAKILYVTSEKFTNELIDAIRNKNNISTTEFREKY 213

Query: 108 --RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                +L++DI  +   +    + FH  N++++    +++++   P         L SR 
Sbjct: 214 RNNDVLLIDDIQFIIGKESTQEEFFHTFNALYEAKKQIIISSDKPPKEIETLEERLRSRF 273

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    V I  PD +    ++ K        ID ++  YI   ++ ++   E  + K+  L
Sbjct: 274 EWGLTVDIQSPDYETRMAILRKKEELEGYNIDNEVIKYIATHVKSNIRELEGALTKIVAL 333

Query: 223 ALSRGMGITRSLAAEVLKETQQC 245
           +      IT  LA E LK+    
Sbjct: 334 SKLNKREITTELAEEALKDLISP 356


>gi|308095436|ref|ZP_05905896.2| chromosomal replication initiator protein DnaA [Vibrio
           parahaemolyticus Peru-466]
 gi|308087878|gb|EFO37573.1| chromosomal replication initiator protein DnaA [Vibrio
           parahaemolyticus Peru-466]
          Length = 443

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
                 D+ +   + +    A R +   P      + L G +G GK+ L +   +     
Sbjct: 125 NPKHKFDNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDN 184

Query: 88  ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128
                           ++ K+L +  I+       +   +L++DI      +    + FH
Sbjct: 185 NPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 244

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   D
Sbjct: 245 TFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAED 304

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 305 HQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 358


>gi|170022263|ref|YP_001718768.1| chromosomal replication initiation protein [Yersinia
           pseudotuberculosis YPIII]
 gi|186893345|ref|YP_001870457.1| chromosomal replication initiation protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|169748797|gb|ACA66315.1| chromosomal replication initiator protein DnaA [Yersinia
           pseudotuberculosis YPIII]
 gi|186696371|gb|ACC87000.1| chromosomal replication initiator protein DnaA [Yersinia
           pseudotuberculosis PB1/+]
          Length = 450

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%)

Query: 23  NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77
           N   Q  L +        + D+ +   + + A          P      + L G +G GK
Sbjct: 102 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 161

Query: 78  SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117
           + L +     I + K+ +            ++ K+L +  I+       +   +L++DI 
Sbjct: 162 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 221

Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
                +    + FH  N++ + +  +++T+  +P         L SR      V I  P+
Sbjct: 222 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 281

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT   
Sbjct: 282 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 341

Query: 235 AAEVLKET 242
             E L++ 
Sbjct: 342 VREALRDL 349


>gi|167621942|ref|YP_001672236.1| chromosomal replication initiation protein [Shewanella halifaxensis
           HAW-EB4]
 gi|189083278|sp|B0TLA4|DNAA_SHEHH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|167351964|gb|ABZ74577.1| chromosomal replication initiator protein DnaA [Shewanella
           halifaxensis HAW-EB4]
          Length = 461

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 127 NPTYQFDNFVEGKSNQLGKAAAMQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 185

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +   +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 186 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 245

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 246 HTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 305

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 306 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 360


>gi|332798024|ref|YP_004459523.1| chromosomal replication initiator protein dnaA [Tepidanaerobacter
           sp. Re1]
 gi|332695759|gb|AEE90216.1| Chromosomal replication initiator protein dnaA [Tepidanaerobacter
           sp. Re1]
          Length = 453

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 99/270 (36%), Gaps = 29/270 (10%)

Query: 1   MNLMKEDY-SFFVPDKQKNDQPKNKEEQLFFSFP--RCLGISRDDLLVHSAIEQAVRLID 57
           +N+  E + S  +PD   +    ++ + L            + D  +V ++   A     
Sbjct: 80  INVNPEGFGSEVLPDDSISLNEVSETKTLAEDTTPSLNQKYTFDTFVVGNSNRFAHAASQ 139

Query: 58  SWPSWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID-- 106
           +    P++      + G  G GK+ L +         D +    + +  K  + ++    
Sbjct: 140 AVAQAPAKAYNPFFIYGGVGLGKTHLMHAIGHYILQQDPTCKVVYLSSEKFTNELINSIR 199

Query: 107 ------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
                       T   +L++DI  +   +    + FH  N++H  +  L++++   P   
Sbjct: 200 DDKNVEFRNKYRTIDVLLIDDIQFIAGKERTQEEFFHTFNALHDANKQLVISSDRPPKEI 259

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L SR +   +  I  PD +    ++ K      + +   +  +I  ++E ++  
Sbjct: 260 PTLEERLRSRFEWGLITDIQPPDFETRIAILQKKAMMENLIVPNDVINFIATKIETNIRE 319

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            E  + ++   +      I   LA +VLK+
Sbjct: 320 LEGALIRVVAYSSLTDCPIDIGLAEQVLKD 349


>gi|269137359|ref|YP_003294059.1| DNA replication initiation ATPase [Edwardsiella tarda EIB202]
 gi|267983019|gb|ACY82848.1| ATPase involved in DNA replication initiation [Edwardsiella tarda
           EIB202]
 gi|304557460|gb|ADM40124.1| Chromosomal replication initiator protein dnaA [Edwardsiella tarda
           FL6-60]
          Length = 440

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 98/263 (37%), Gaps = 33/263 (12%)

Query: 13  PDKQKNDQPKNK-------EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65
           P   +   P          + +L +        + D+ +   + + A          P  
Sbjct: 77  PAAVRTSSPARPSWERVTAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGG 136

Query: 66  V---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID--- 106
               + L G +G GK+ L +     I + K  +            ++ K+L +  I+   
Sbjct: 137 AYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFK 196

Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
               +   +L++DI      +    + FH  N++ + +  +++T+  +P         L 
Sbjct: 197 RYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLK 256

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SR      V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++
Sbjct: 257 SRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRV 316

Query: 220 DNLALSRGMGITRSLAAEVLKET 242
              A   G  IT     E L++ 
Sbjct: 317 IANANFTGRAITIDFVREALRDL 339


>gi|242372602|ref|ZP_04818176.1| replication initiation protein DnaA [Staphylococcus epidermidis
           M23864:W1]
 gi|242349657|gb|EES41258.1| replication initiation protein DnaA [Staphylococcus epidermidis
           M23864:W1]
          Length = 455

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S++  + 
Sbjct: 124 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNQPNAK 183

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 184 VIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 244 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 302

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L AE LK+  Q 
Sbjct: 303 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQA 355


>gi|325278758|ref|YP_004251300.1| Chromosomal replication initiator protein dnaA [Odoribacter
           splanchnicus DSM 20712]
 gi|324310567|gb|ADY31120.1| Chromosomal replication initiator protein dnaA [Odoribacter
           splanchnicus DSM 20712]
          Length = 474

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 91/267 (34%), Gaps = 35/267 (13%)

Query: 9   SFFVPDKQKNDQPKNKEE----QLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWP 60
           S    D+  +   KN  E    Q+          + +  +  +    A      +     
Sbjct: 107 STVYLDQTGHSTLKNPFERASNQIQIDSQLNPSYTMESYIEGNCNRLARSAGMAIAQKPG 166

Query: 61  SWPSRVVILVGPSGSGKSCLAN---------------------IWSDK-SRSTRFSNIAK 98
                 +++ G SG GK+ LA                      I+  + + + R + +  
Sbjct: 167 GTAFNPLLIYGGSGLGKTHLAQAIGLEVKQNFPNKVVLYVSTNIFQTQFTEAVRRNEVND 226

Query: 99  SLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
            L    +     ++L+DI  L          FHI N +HQ    L++T    P       
Sbjct: 227 FLHFYQL--IDVLILDDIQELAGKTGTQNTFFHIFNHLHQSGKQLILTCDKAPAELEGME 284

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L SR +     +I  PD D  +++++       I   +++  YI + ++ ++   E  
Sbjct: 285 DRLLSRFRWGLSAEIKAPDFDTRKEIVLNKARKDGIDFSEEVIEYICKYVDHNVRELEGA 344

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKET 242
           +  +   +      +T  +  ++L + 
Sbjct: 345 MISLLAQSTFNKRDLTVDVVRDILGKM 371


>gi|307133247|ref|YP_003885263.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Dickeya dadantii 3937]
 gi|306530776|gb|ADN00707.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Dickeya dadantii 3937]
          Length = 462

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 186

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 187 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 307 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 361


>gi|183597172|ref|ZP_02958665.1| hypothetical protein PROSTU_00415 [Providencia stuartii ATCC 25827]
 gi|188023486|gb|EDU61526.1| hypothetical protein PROSTU_00415 [Providencia stuartii ATCC 25827]
          Length = 463

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I  
Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMQ 187

Query: 86  DKSRSTRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 188 HKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 308 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362


>gi|153821932|ref|ZP_01974599.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae B33]
 gi|126520552|gb|EAZ77775.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae B33]
          Length = 370

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 35  VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 94

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 95  NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 154

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 155 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 214

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 215 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 269


>gi|91791370|ref|YP_561021.1| chromosomal replication initiation protein [Shewanella
           denitrificans OS217]
 gi|122969114|sp|Q12TC8|DNAA_SHEDO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|91713372|gb|ABE53298.1| chromosomal replication initiator protein DnaA [Shewanella
           denitrificans OS217]
          Length = 462

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85
                 D+ +   +       A+++ ++ P      + L G +G GK+ L +     I  
Sbjct: 128 NPTYQFDNFVEGKSNQLGKAAAMQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 186

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127
           +   +      ++     ++   +   +E+       +D L  +D            + F
Sbjct: 187 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 246

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 247 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 306

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A ++ +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 307 ESGINLPDEVAFFVAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 361


>gi|268678645|ref|YP_003303076.1| chromosomal replication initiator protein DnaA [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616676|gb|ACZ11041.1| chromosomal replication initiator protein DnaA [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 441

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91
               + +  +V S+ + A     S    P      V + GP+G GK+ L +   + ++S 
Sbjct: 106 NPSYTFNSFVVGSSNQYAYTAAKSVAEKPGVMYNPVFIYGPTGLGKTHLIHAIGNYAQSK 165

Query: 92  RFSNIAKSLDSILID------------------TRKPVLLEDIDLLD---FNDTQLFHII 130
               I  +++  + D                  +   +L++D   L        + FH  
Sbjct: 166 GKIVIYATIEQFMNDFTYNLRNQSMERFREKYRSCDVLLIDDTQFLSNKIQTQEEFFHTF 225

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +H     +++T+   P         L SR +   +  + LP+ +    +I K      
Sbjct: 226 NELHSAGKQIVLTSDKPPKMINGLEDRLKSRFEWGLIADVGLPELETKIAIIKKKCELDG 285

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I ++  +  YI   M  ++   E  +  ++  AL     IT   A  V++E 
Sbjct: 286 INLNSDIVNYIASNMGDNIREIESAIINLNAYALLMRQDITLEFAKNVMREQ 337


>gi|268593488|ref|ZP_06127709.1| DNA biosynthesis protein [Providencia rettgeri DSM 1131]
 gi|291310910|gb|EFE51363.1| DNA biosynthesis protein [Providencia rettgeri DSM 1131]
          Length = 463

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I  
Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMQ 187

Query: 86  DKSRSTRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 188 HKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 308 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362


>gi|145297125|ref|YP_001139966.1| chromosomal replication initiation protein [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|166201858|sp|A4SH46|DNAA_AERS4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|142849897|gb|ABO88218.1| chromosomal replication initiator protein DnaA [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 456

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 89/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87
             +  + ++ +   + + A          P      + L G +G GK+ L +   +    
Sbjct: 121 TNVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKE 180

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 181 RKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 240

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 241 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAD 300

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + QI +  ++A +I +R+  ++   E  ++++   A   G  I      E L++ 
Sbjct: 301 ENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREALRDL 355


>gi|317494667|ref|ZP_07953079.1| chromosomal replication initiator protein DnaA [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917269|gb|EFV38616.1| chromosomal replication initiator protein DnaA [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 466

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%)

Query: 23  NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77
           N   Q  L +        + D+ +   + + A          P      + L G +G GK
Sbjct: 118 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 177

Query: 78  SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117
           + L +     I + K+ +            ++ K+L +  I+       +   +L++DI 
Sbjct: 178 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237

Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
                +    + FH  N++ + +  +++T+  +P         L SR      V I  P+
Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT   
Sbjct: 298 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 357

Query: 235 AAEVLKET 242
             E L++ 
Sbjct: 358 VREALRDL 365


>gi|261213263|ref|ZP_05927545.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC341]
 gi|260837537|gb|EEX64240.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC341]
          Length = 458

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 123 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 182

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 183 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 242

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 243 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 302

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 303 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 357


>gi|150387854|ref|YP_001317903.1| chromosomal replication initiation protein [Alkaliphilus
           metalliredigens QYMF]
 gi|167016895|sp|A6TJ76|DNAA_ALKMQ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|149947716|gb|ABR46244.1| chromosomal replication initiator protein DnaA [Alkaliphilus
           metalliredigens QYMF]
          Length = 448

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 104/267 (38%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQK-----NDQPKNKEEQLFF----SFPRCLGISRDDLLVHSAIEQAVRL---ID 57
             VP +++     N   +    Q               + D  ++ ++   A      + 
Sbjct: 79  IVVPSEERVGDTQNINARRSNAQSPIMGNSPLILNPKYTFDTFVIGNSNRFAHAASVAVA 138

Query: 58  SWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK--- 109
             P+     + + G  G GK+ L N     I ++  ++      +++  + LI++ +   
Sbjct: 139 ESPAKAYNPLFIYGGVGLGKTHLMNAIGHYILANNPKAKVVYVSSETFTNELINSIRDDR 198

Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  +   +    + FH  N++H+ +  +++++   P      
Sbjct: 199 NVEFRNRYRNVDVLLVDDIQFIAGKERTQEEFFHTFNALHESNKQIIISSDRPPKEIPTL 258

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I  PD +    ++ K      I++  ++ A+I ++++ ++   E 
Sbjct: 259 EERLRSRFEWGLITDIQPPDLETRIAILRKKAQMENIYVPDEVTAHIAKKIQSNIRELEG 318

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      +T  LA+E LKE
Sbjct: 319 ALIRIVAYSSLTNSEVTVELASEALKE 345


>gi|45443728|ref|NP_995267.1| chromosomal replication initiation protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51598227|ref|YP_072418.1| chromosomal replication initiation protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108810133|ref|YP_654049.1| chromosomal replication initiation protein [Yersinia pestis
           Antiqua]
 gi|108814115|ref|YP_649882.1| chromosomal replication initiation protein [Yersinia pestis
           Nepal516]
 gi|145597325|ref|YP_001161400.1| chromosomal replication initiation protein [Yersinia pestis
           Pestoides F]
 gi|150260968|ref|ZP_01917696.1| chromosomal replication initiator protein [Yersinia pestis
           CA88-4125]
 gi|153950668|ref|YP_001403095.1| chromosomal replication initiation protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419763|ref|YP_001608448.1| chromosomal replication initiation protein [Yersinia pestis Angola]
 gi|165926099|ref|ZP_02221931.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|166009506|ref|ZP_02230404.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213287|ref|ZP_02239322.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401560|ref|ZP_02307054.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167422851|ref|ZP_02314604.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425478|ref|ZP_02317231.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|218931074|ref|YP_002348949.1| chromosomal replication initiation protein [Yersinia pestis CO92]
 gi|229839804|ref|ZP_04459963.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229841889|ref|ZP_04462045.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229896766|ref|ZP_04511929.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Yersinia pestis
           Pestoides A]
 gi|229904654|ref|ZP_04519765.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Yersinia pestis
           Nepal516]
 gi|270488365|ref|ZP_06205439.1| chromosomal replication initiator protein DnaA [Yersinia pestis KIM
           D27]
 gi|294505625|ref|YP_003569687.1| chromosomal replication initiation protein [Yersinia pestis
           Z176003]
 gi|21362472|sp|Q8Z9U7|DNAA_YERPE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61212542|sp|Q663T2|DNAA_YERPS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123073045|sp|Q1CCJ8|DNAA_YERPN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123371953|sp|Q1C0B8|DNAA_YERPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166215370|sp|A4TGL5|DNAA_YERPP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|167016907|sp|A7FPB7|DNAA_YERP3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735866|sp|A9R5R5|DNAA_YERPG RecName: Full=Chromosomal replication initiator protein DnaA
 gi|45438598|gb|AAS64144.1| chromosomal replication initiator protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51591509|emb|CAH23181.1| chromosomal replication initiator protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777763|gb|ABG20282.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           Nepal516]
 gi|108782046|gb|ABG16104.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           Antiqua]
 gi|115349685|emb|CAL22666.1| chromosomal replication initiator protein [Yersinia pestis CO92]
 gi|145209021|gb|ABP38428.1| chromosomal replication initiator protein [Yersinia pestis
           Pestoides F]
 gi|149290376|gb|EDM40453.1| chromosomal replication initiator protein [Yersinia pestis
           CA88-4125]
 gi|152962163|gb|ABS49624.1| chromosomal replication initiator protein DnaA [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352578|gb|ABX86526.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           Angola]
 gi|165921959|gb|EDR39136.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991428|gb|EDR43729.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166205585|gb|EDR50065.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166958243|gb|EDR55264.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167048942|gb|EDR60350.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055492|gb|EDR65285.1| chromosomal replication initiator protein DnaA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229678772|gb|EEO74877.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Yersinia pestis
           Nepal516]
 gi|229691228|gb|EEO83281.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696170|gb|EEO86217.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700204|gb|EEO88240.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Yersinia pestis
           Pestoides A]
 gi|270336869|gb|EFA47646.1| chromosomal replication initiator protein DnaA [Yersinia pestis KIM
           D27]
 gi|294356084|gb|ADE66425.1| chromosomal replication initiation protein [Yersinia pestis
           Z176003]
 gi|320017427|gb|ADW00999.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 462

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%)

Query: 23  NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77
           N   Q  L +        + D+ +   + + A          P      + L G +G GK
Sbjct: 114 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 173

Query: 78  SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117
           + L +     I + K+ +            ++ K+L +  I+       +   +L++DI 
Sbjct: 174 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 233

Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
                +    + FH  N++ + +  +++T+  +P         L SR      V I  P+
Sbjct: 234 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 293

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT   
Sbjct: 294 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 353

Query: 235 AAEVLKET 242
             E L++ 
Sbjct: 354 VREALRDL 361


>gi|163751709|ref|ZP_02158928.1| chromosomal replication initiation protein [Shewanella benthica
           KT99]
 gi|161328448|gb|EDP99604.1| chromosomal replication initiation protein [Shewanella benthica
           KT99]
          Length = 396

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 96/265 (36%), Gaps = 35/265 (13%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPR---------CLGISRDDLLVHSAIE---QAVRLIDSWP 60
           P  Q N +P      +    P                D+ +   + +    A + +   P
Sbjct: 31  PRVQMNTRPARTAFNVNMPEPAIMTNHRSNINPAYQFDNFVEGKSNQLGKAAAQQVAENP 90

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID- 106
                 + L G +G GK+ L +   +                     ++ K+L +  I+ 
Sbjct: 91  GGAYNPLFLYGGTGLGKTHLLHAVGNAIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEE 150

Query: 107 ------TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                 +   + ++DI      D +  + FH  N++ + +  +++T+  +P         
Sbjct: 151 FKRYYRSVDALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQVILTSDKYPKEIDGVEDR 210

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      V I  P+ +    ++++   +  + +  ++A +I +R+  ++   E  ++
Sbjct: 211 LKSRFGWGLTVAIEPPELETRVAILMRKALESGVNLPDEVAFFIAKRLRSNVRELEGALN 270

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
           ++   A   G  IT     E L++ 
Sbjct: 271 RVIANANFTGRPITIDFVREALRDL 295


>gi|22127981|ref|NP_671404.1| chromosomal replication initiation protein [Yersinia pestis KIM 10]
 gi|21961126|gb|AAM87655.1|AE014012_12 DNA biosynthesis protein [Yersinia pestis KIM 10]
          Length = 466

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%)

Query: 23  NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77
           N   Q  L +        + D+ +   + + A          P      + L G +G GK
Sbjct: 118 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 177

Query: 78  SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117
           + L +     I + K+ +            ++ K+L +  I+       +   +L++DI 
Sbjct: 178 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237

Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
                +    + FH  N++ + +  +++T+  +P         L SR      V I  P+
Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT   
Sbjct: 298 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 357

Query: 235 AAEVLKET 242
             E L++ 
Sbjct: 358 VREALRDL 365


>gi|262367726|gb|ACY64283.1| chromosomal replication initiator protein [Yersinia pestis D182038]
          Length = 462

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%)

Query: 23  NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77
           N   Q  L +        + D+ +   + + A          P      + L G +G GK
Sbjct: 114 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 173

Query: 78  SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117
           + L +     I + K+ +            ++ K+L +  I+       +   +L++DI 
Sbjct: 174 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 233

Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
                +    + FH  N++ + +  +++T+  +P         L SR      V I  P+
Sbjct: 234 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 293

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT   
Sbjct: 294 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 353

Query: 235 AAEVLKET 242
             E L++ 
Sbjct: 354 VREALRDL 361


>gi|262166785|ref|ZP_06034522.1| chromosomal replication initiator protein dnaA [Vibrio mimicus
           VM223]
 gi|262026501|gb|EEY45169.1| chromosomal replication initiator protein dnaA [Vibrio mimicus
           VM223]
          Length = 421

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 86  VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 145

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 146 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 205

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 206 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 265

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 266 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 320


>gi|302388600|ref|YP_003824421.1| chromosomal replication initiator protein DnaA
           [Thermosediminibacter oceani DSM 16646]
 gi|302199228|gb|ADL06798.1| chromosomal replication initiator protein DnaA
           [Thermosediminibacter oceani DSM 16646]
          Length = 449

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 94/253 (37%), Gaps = 30/253 (11%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGP 72
           +K+ +P  +E Q   +       + D  +V ++   A      +   P+       + G 
Sbjct: 98  EKDIKPVAEEGQSTLN----SKYTFDTFVVGNSNRFAHAASLAVAQAPAKAYNPFFIYGG 153

Query: 73  SGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---L 112
            G GK+ L +                   S+K  +   ++I    +    +  + +   L
Sbjct: 154 VGLGKTHLMHAIGHYILQHNPSCKVVYVSSEKFTNELINSIRDDKNVEFRNKYRNIDVLL 213

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  +   +    + FH  N++++ +  +++++   P         L SR +   +  
Sbjct: 214 IDDIQFIAGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEERLRSRFEWGLITD 273

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  PD +    ++ K      + +   +  +I  ++E ++   E  + ++   +      
Sbjct: 274 IQPPDFETRIAILRKKAMMENLTVPDDVINFIATKIETNIRELEGALIRIVAFSSLTNKP 333

Query: 230 ITRSLAAEVLKET 242
           I   LA  VLK+ 
Sbjct: 334 IDLDLAEHVLKDL 346


>gi|238787828|ref|ZP_04631625.1| Chromosomal replication initiator protein dnaA [Yersinia
           frederiksenii ATCC 33641]
 gi|238724171|gb|EEQ15814.1| Chromosomal replication initiator protein dnaA [Yersinia
           frederiksenii ATCC 33641]
          Length = 462

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 186

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 187 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 307 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 361


>gi|271498579|ref|YP_003331604.1| chromosomal replication initiator protein DnaA [Dickeya dadantii
           Ech586]
 gi|270342134|gb|ACZ74899.1| chromosomal replication initiator protein DnaA [Dickeya dadantii
           Ech586]
          Length = 462

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 186

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 187 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 307 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 361


>gi|319951594|ref|YP_004162861.1| chromosomal replication initiator protein dnaa [Cellulophaga
           algicola DSM 14237]
 gi|319420254|gb|ADV47363.1| chromosomal replication initiator protein DnaA [Cellulophaga
           algicola DSM 14237]
          Length = 474

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 97/269 (36%), Gaps = 39/269 (14%)

Query: 12  VPDKQKNDQPKNKEEQL--FFSFP----------RCLGISRDDLLVHSAIEQAVRLIDSW 59
           VP ++ +   K+K  QL   F  P               + ++ L   +   A     + 
Sbjct: 105 VPAQELDVAIKSKNPQLKNPFIIPGIRNIKIESQLNPNYNFENFLEGDSNRLARSAGMAV 164

Query: 60  PSWPSRV----VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98
            + P       +++ G  G GK+ LA+                   ++K       ++ K
Sbjct: 165 ANKPGGTSFNPLLIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKK 224

Query: 99  SLDSILIDTRKPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +  +  I   + +   +++D+  L          FHI N +HQ    +++T+   PV   
Sbjct: 225 NTRNDFIHFYQLIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQ 284

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR K     ++  PD +    ++        + +   +  Y+ + ++ ++   
Sbjct: 285 DIEQRLLSRFKWGLSAELQNPDYETRISILKNKLYRDGVEMPDDIIDYVAKHIKTNIREL 344

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           E  +  +   +      +T  LA +V+++
Sbjct: 345 EGAIISLIAQSSFNKKEVTLDLAQQVVEK 373


>gi|238793143|ref|ZP_04636771.1| Chromosomal replication initiator protein dnaA [Yersinia intermedia
           ATCC 29909]
 gi|238727516|gb|EEQ19042.1| Chromosomal replication initiator protein dnaA [Yersinia intermedia
           ATCC 29909]
          Length = 462

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 186

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 187 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 307 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 361


>gi|260912769|ref|ZP_05919255.1| ribosomal subunit interface protein [Pasteurella dagmatis ATCC
           43325]
 gi|260633147|gb|EEX51312.1| ribosomal subunit interface protein [Pasteurella dagmatis ATCC
           43325]
          Length = 453

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 90/235 (38%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP----SRVVILVGPSGSGKSCLAN-----IWS 85
                 ++ +   + + A  +       P    S  + L G +G GK+ L +     I +
Sbjct: 118 NPKHVFENFVEGKSNQLARAVAQKVADNPGETSSNPLFLYGGTGLGKTHLLHAIGNGILA 177

Query: 86  DKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127
           +K  +      A +    LI+  +                +L++DI      +    + F
Sbjct: 178 NKPNARVLYIHANNFIQQLINAIRDNKMDEFKKFYRSLDALLVDDIQFFAEKEKTQEEFF 237

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++      +++T+  +P         L SR        I  P+ +    +++K   
Sbjct: 238 HIFNNLFDAGRQIILTSDRYPKEIEKLEERLKSRFGWGLTTAIEPPELETRVAILLKKAE 297

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ I + +++A +I Q++  ++   E  ++++   A   G  IT     E LK+ 
Sbjct: 298 EKNIHLPEEVAFFIGQKLRTNVRDLEGALNRVGANAEFMGAPITIDFVRETLKDM 352


>gi|323705848|ref|ZP_08117420.1| chromosomal replication initiator protein DnaA
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534844|gb|EGB24623.1| chromosomal replication initiator protein DnaA
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 443

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
               + D  +V ++ + A     +    P+R    + + G  G GK+ L +         
Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQSPARAYNPLFIYGGVGLGKTHLMHAIGHFVLEH 168

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
            S +      +++  + L+++ K                +L++DI  +   +    + FH
Sbjct: 169 NSNTKIMYVTSETFTNELVNSIKDDKNEEFRNKYRSMDILLIDDIQFIAKKERTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K   +
Sbjct: 229 TFNTLYEANKQIIVSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRIAILKKKAQN 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I   +  YI +++  ++   E  + ++   +      I   LA + LK+
Sbjct: 289 ENLNIPDDVLVYIAEKIPSNIRELEGALIRIVAFSSLTKANIDLDLAKDALKD 341


>gi|50123359|ref|YP_052526.1| chromosomal replication initiation protein [Pectobacterium
           atrosepticum SCRI1043]
 gi|61212568|sp|Q6CYR4|DNAA_ERWCT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|49613885|emb|CAG77337.1| chromosomal replication initiator protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 465

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 364


>gi|123444342|ref|YP_001008307.1| chromosomal replication initiation protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332163521|ref|YP_004300098.1| chromosomal replication initiation protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|166215369|sp|A1JT80|DNAA_YERE8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|122091303|emb|CAL14189.1| chromosomal replication initiator protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|318608025|emb|CBY29523.1| chromosomal replication initiator protein DNAA [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667751|gb|ADZ44395.1| chromosomal replication initiation protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330861746|emb|CBX71920.1| chromosomal replication initiator protein dnaA [Yersinia
           enterocolitica W22703]
          Length = 462

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 96/250 (38%), Gaps = 28/250 (11%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75
             P   E  L +        + D+ +   + + A          P      + L G +G 
Sbjct: 114 SSPAQPE--LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 171

Query: 76  GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115
           GK+ L +     I + K+ +            ++ K+L +  I+       +   +L++D
Sbjct: 172 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I      +    + FH  N++ + +  +++T+  +P         L SR      V I  
Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT 
Sbjct: 292 PELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 351

Query: 233 SLAAEVLKET 242
               E L++ 
Sbjct: 352 DFVREALRDL 361


>gi|238783048|ref|ZP_04627075.1| Chromosomal replication initiator protein dnaA [Yersinia bercovieri
           ATCC 43970]
 gi|238716049|gb|EEQ08034.1| Chromosomal replication initiator protein dnaA [Yersinia bercovieri
           ATCC 43970]
          Length = 463

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 188 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 308 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362


>gi|330827701|ref|YP_004390653.1| chromosomal replication initiator protein DnaA [Aeromonas veronii
           B565]
 gi|328802837|gb|AEB48036.1| Chromosomal replication initiator protein dnaA [Aeromonas veronii
           B565]
          Length = 456

 Score =  122 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 89/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87
             +  + ++ +   + + A          P      + L G +G GK+ L +   +    
Sbjct: 121 TNVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKE 180

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 181 SKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 240

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 241 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAD 300

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + QI +  ++A +I +R+  ++   E  ++++   A   G  I      E L++ 
Sbjct: 301 ENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREALRDL 355


>gi|160885204|ref|ZP_02066207.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483]
 gi|237714833|ref|ZP_04545314.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1]
 gi|237720012|ref|ZP_04550493.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           2_2_4]
 gi|262406895|ref|ZP_06083444.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_22]
 gi|293368855|ref|ZP_06615459.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus
           SD CMC 3f]
 gi|294643068|ref|ZP_06720907.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus
           SD CC 2a]
 gi|294807803|ref|ZP_06766593.1| chromosomal replication initiator protein DnaA [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298479865|ref|ZP_06998065.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22]
 gi|299147890|ref|ZP_07040953.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           3_1_23]
 gi|156109554|gb|EDO11299.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483]
 gi|229445158|gb|EEO50949.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1]
 gi|229450564|gb|EEO56355.1| chromosomal replication initiator protein dnaA [Bacteroides sp.
           2_2_4]
 gi|262355598|gb|EEZ04689.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           2_1_22]
 gi|292636160|gb|EFF54648.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus
           SD CMC 3f]
 gi|292641587|gb|EFF59766.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus
           SD CC 2a]
 gi|294445000|gb|EFG13677.1| chromosomal replication initiator protein DnaA [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295084766|emb|CBK66289.1| chromosomal replication initiator protein DnaA [Bacteroides
           xylanisolvens XB1A]
 gi|298274255|gb|EFI15816.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22]
 gi|298514073|gb|EFI37959.1| ATPase involved in DNA replication initiation [Bacteroides sp.
           3_1_23]
          Length = 470

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 28/242 (11%)

Query: 33  PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87
           P      + ++ +   + + +  + ++    P       + L G SG GK+ LAN    K
Sbjct: 130 PHLNPNYNFENFIEGYSNKLSRSVAEAVAQKPGGTAFNPLFLYGASGVGKTHLANAIGTK 189

Query: 88  SRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLDF---NDT 124
            +          + + L                      T   ++++DI           
Sbjct: 190 IKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAGVTKTQN 249

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             FHI N +HQ    L++T+   PV        L +R K   V ++  P  +  + ++  
Sbjct: 250 NFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGMVAELEKPTVELRKNILRN 309

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 +    ++  YI + +  S+   E +V  +   +      I   LA  ++     
Sbjct: 310 KIHRDGLQFPPEVIDYIAENVNESVRDLEGIVIAIMARSTIFNKEIDLDLAQHIVHGVVH 369

Query: 245 CD 246
            +
Sbjct: 370 NE 371


>gi|153808748|ref|ZP_01961416.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185]
 gi|149128574|gb|EDM19792.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185]
          Length = 470

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 28/242 (11%)

Query: 33  PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87
           P      + ++ +   + + +  + ++    P       + L G SG GK+ LAN    K
Sbjct: 130 PHLNPNYNFENFIEGYSNKLSRSVAEAVAQKPGGTAFNPLFLYGASGVGKTHLANAIGTK 189

Query: 88  SRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLDF---NDT 124
            +          + + L                      T   ++++DI           
Sbjct: 190 IKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAGVTKTQN 249

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             FHI N +HQ    L++T+   PV        L +R K   V ++  P  +  + ++  
Sbjct: 250 NFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGMVAELEKPTVELRKNILRN 309

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 +    ++  YI + +  S+   E +V  +   +      I   LA  ++     
Sbjct: 310 KIHRDGLQFPPEVIDYIAENVNESVRDLEGIVIAIMARSTIFNKEIDLDLAQHIVHGVVH 369

Query: 245 CD 246
            +
Sbjct: 370 NE 371


>gi|304315538|ref|YP_003850683.1| chromosomal replication initiator protein DnaA
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777040|gb|ADL67599.1| chromosomal replication initiator protein DnaA
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 443

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
               + D  +V ++ + A     +    P+R    + + G  G GK+ L +         
Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQSPARAYNPLFIYGGVGLGKTHLMHAIGHFVLEH 168

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
            S +      +++  + L+++ K                +L++DI  +   +    + FH
Sbjct: 169 NSNTKIMYVTSETFTNELVNSIKDDKNEEFRNKYRSMDILLIDDIQFIAKKERTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K   +
Sbjct: 229 TFNTLYEANKQIIVSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRIAILKKKAQN 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I   +  YI +++  ++   E  + ++   +      I   LA + LK+
Sbjct: 289 ENLNIPDDVLIYIAEKIPSNIRELEGALIRIVAFSSLTKANIDLDLAKDALKD 341


>gi|78042923|ref|YP_361492.1| chromosomal replication initiation protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995038|gb|ABB13937.1| chromosomal replication initiator protein DnaA [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 454

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 89/237 (37%), Gaps = 26/237 (10%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDS---WPSWPSRVVILVGPSGSGKSCLANIW---- 84
           F      + +  +V ++   A     +    P+     + + G  G GK+ L +      
Sbjct: 115 FTLNPKYTFETFVVGNSNRFAHAACLAVAESPAEAYNPLFIYGGVGLGKTHLMHAIGHYI 174

Query: 85  -------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQ 125
                        ++K  +   ++I         +  + +   L++DI  L+  +    +
Sbjct: 175 LKNKPEMKVAYVTTEKFTNDLINSIKDDTTEEFRNKYRSIDVLLIDDIQFLEKKERTQEE 234

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++++ +  +++++   P         L SR +   +  I  PD +    ++ K 
Sbjct: 235 FFHTFNALYEANKQIVISSDRTPKELSTLEDRLRSRFEWGLITDIQPPDLETRIAILRKK 294

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                + +D  +  +I   +  ++   E  + ++   A   G  IT  LAA+ LK+ 
Sbjct: 295 AQLDNLHVDDAVLNFIANEIVSNIRELEGALIRVVAYAGLHGEPITVDLAAKALKDL 351


>gi|329735774|gb|EGG72055.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis VCU028]
 gi|329736075|gb|EGG72348.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis VCU045]
          Length = 451

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S+K  + 
Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 179

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L AE LK+  Q 
Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 351


>gi|319399914|gb|EFV88160.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis FRI909]
          Length = 451

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S+K  + 
Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 179

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L AE LK+  Q 
Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 351


>gi|293367580|ref|ZP_06614233.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291318293|gb|EFE58686.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 455

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S+K  + 
Sbjct: 124 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 183

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 184 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 244 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 302

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L AE LK+  Q 
Sbjct: 303 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 355


>gi|251811364|ref|ZP_04825837.1| replication initiation protein DnaA [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805113|gb|EES57770.1| replication initiation protein DnaA [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 455

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S+K  + 
Sbjct: 124 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 183

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 184 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 244 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 302

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L AE LK+  Q 
Sbjct: 303 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 355


>gi|242243255|ref|ZP_04797700.1| replication initiation protein DnaA [Staphylococcus epidermidis
           W23144]
 gi|242233204|gb|EES35516.1| replication initiation protein DnaA [Staphylococcus epidermidis
           W23144]
          Length = 455

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S+K  + 
Sbjct: 124 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 183

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 184 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 244 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 302

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L AE LK+  Q 
Sbjct: 303 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 355


>gi|57865939|ref|YP_190094.1| chromosomal replication initiation protein [Staphylococcus
           epidermidis RP62A]
 gi|71151806|sp|Q5HJZ9|DNAA_STAEQ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|57636597|gb|AAW53385.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis RP62A]
          Length = 451

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S+K  + 
Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 179

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L AE LK+  Q 
Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 351


>gi|27466919|ref|NP_763556.1| chromosomal replication initiation protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|282874721|ref|ZP_06283600.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis SK135]
 gi|38257580|sp|Q8CQK7|DNAA_STAES RecName: Full=Chromosomal replication initiator protein DnaA
 gi|27314461|gb|AAO03598.1|AE016744_1 chromosomal replication initiator protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|281296437|gb|EFA88952.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis SK135]
 gi|329724160|gb|EGG60678.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis VCU144]
          Length = 451

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S+K  + 
Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 179

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L AE LK+  Q 
Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 351


>gi|88860616|ref|ZP_01135253.1| DNA replication initiator protein [Pseudoalteromonas tunicata D2]
 gi|88817211|gb|EAR27029.1| DNA replication initiator protein [Pseudoalteromonas tunicata D2]
          Length = 460

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 92/234 (39%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +   + + A          P      V + G +G GK+ L +     I ++
Sbjct: 126 KETYTFDSFVEGKSNQLAKAAASQVADNPGTAFNPVFIYGGTGLGKTHLLHAVGNGILAN 185

Query: 87  KSRSTR--------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128
           K  +            ++ ++L +  I+       +   +L++DI      +    + FH
Sbjct: 186 KPNAKIAYMHSERFVQDMVRALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 245

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      + I  P+ +    +++K    
Sbjct: 246 TFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAILMKKAQQ 305

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I + +++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 306 SKIKLPEEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVKEALRDL 359


>gi|319778438|ref|YP_004129351.1| Chromosomal replication initiator protein DnaA [Taylorella
           equigenitalis MCE9]
 gi|317108462|gb|ADU91208.1| Chromosomal replication initiator protein DnaA [Taylorella
           equigenitalis MCE9]
          Length = 227

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVIL-VGPSGSGKSCLANIWSDKSRSTRF 93
              ++ D+    ++ E+ V +I +        +IL  G   SGKS L +   +K     F
Sbjct: 13  KPSLTFDNFY-TNSNEELVEIIKN----KLPTLILIWGEEASGKSHLLSAMKEKFEGEFF 67

Query: 94  S-NIAKSLDSILIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYD-----SSLLMTART 146
           S N   S  + +    K   ++DI+L        LF++   +          ++ +T+  
Sbjct: 68  SSNTFPSTSADINTDLKKYFIDDINLFSNAQLDVLFYLFTKLQIAGLGDRDVNIAITSNC 127

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P    +   DL +RL    V +I    D F  K +++   +    + +++ +++     
Sbjct: 128 PPTQLKIR-EDLRNRLGWGLVYEIKRLPDSFARKALIERAKEMGWNLPEEVLSWLYSYYS 186

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           R   F   L+D +D ++L+    IT      V+++ 
Sbjct: 187 RDAKFLFNLIDNLDQISLTEKRTITIPFVKRVIEDM 222


>gi|227328545|ref|ZP_03832569.1| chromosomal replication initiation protein [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 465

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 364


>gi|262167100|ref|ZP_06034815.1| chromosomal replication initiator protein dnaA [Vibrio cholerae
           RC27]
 gi|262024486|gb|EEY43172.1| chromosomal replication initiator protein dnaA [Vibrio cholerae
           RC27]
          Length = 444

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 109 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 168

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 169 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 288

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 289 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 343


>gi|332519668|ref|ZP_08396132.1| chromosomal replication initiator protein DnaA [Lacinutrix algicola
           5H-3-7-4]
 gi|332044227|gb|EGI80421.1| chromosomal replication initiator protein DnaA [Lacinutrix algicola
           5H-3-7-4]
          Length = 475

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 93/259 (35%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS-R 65
           F +P  +        E QL          + D+ L   +   A      + + P   S  
Sbjct: 125 FVIPGIRNV----KIESQL------NPSYNFDNFLEGDSNRLARSAGLAVSAKPGGTSFN 174

Query: 66  VVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIDSVKKNNRNDFIHFY 234

Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + +   +++D+  L          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QLIDVLVIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++        + + + +  Y+ + ++ ++   E  +  +   
Sbjct: 295 KWGLSAELQTPDFETRVSILKNKLYRDGVEMPEDIIEYVAKNIKSNIRELEGAIISLIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           +      I   LA +V+++
Sbjct: 355 SSFNKKEINIELAKQVVEK 373


>gi|117617947|ref|YP_854527.1| chromosomal replication initiation protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|166201857|sp|A0KEC3|DNAA_AERHH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|117559354|gb|ABK36302.1| chromosomal replication initiator protein DnaA [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 456

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 89/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87
             +  + ++ +   + + A          P      + L G +G GK+ L +   +    
Sbjct: 121 TNVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKE 180

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 181 RKQDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 240

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   
Sbjct: 241 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAD 300

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + QI +  ++A +I +R+  ++   E  ++++   A   G  I      E L++ 
Sbjct: 301 ENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREALRDL 355


>gi|15640044|ref|NP_062596.1| chromosomal replication initiation protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|147674057|ref|YP_001218400.1| chromosomal replication initiation protein [Vibrio cholerae O395]
 gi|153212955|ref|ZP_01948549.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 1587]
 gi|153802489|ref|ZP_01957075.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae MZO-3]
 gi|153819845|ref|ZP_01972512.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae NCTC
           8457]
 gi|153830821|ref|ZP_01983488.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 623-39]
 gi|227080249|ref|YP_002808800.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae M66-2]
 gi|254225544|ref|ZP_04919153.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae V51]
 gi|254291127|ref|ZP_04961924.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae
           AM-19226]
 gi|254851577|ref|ZP_05240927.1| chromosomal replication initiation protein [Vibrio cholerae MO10]
 gi|297581954|ref|ZP_06943874.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae RC385]
 gi|298501197|ref|ZP_07010996.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MAK
           757]
 gi|9654403|gb|AAF93190.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|124116181|gb|EAY35001.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 1587]
 gi|124121959|gb|EAY40702.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae MZO-3]
 gi|125621864|gb|EAZ50189.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae V51]
 gi|126509606|gb|EAZ72200.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae NCTC
           8457]
 gi|146315940|gb|ABQ20479.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O395]
 gi|148873705|gb|EDL71840.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 623-39]
 gi|150422972|gb|EDN14922.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae
           AM-19226]
 gi|227008137|gb|ACP04349.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae M66-2]
 gi|227011985|gb|ACP08195.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O395]
 gi|254847282|gb|EET25696.1| chromosomal replication initiation protein [Vibrio cholerae MO10]
 gi|297533821|gb|EFH72662.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae RC385]
 gi|297540069|gb|EFH76131.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MAK
           757]
          Length = 472

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 137 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 196

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 197 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 256

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 257 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 316

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 317 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 371


>gi|227113116|ref|ZP_03826772.1| chromosomal replication initiation protein [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 465

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 364


>gi|148982286|ref|ZP_01816693.1| chromosomal replication initiation protein [Vibrionales bacterium
           SWAT-3]
 gi|145960551|gb|EDK25908.1| chromosomal replication initiation protein [Vibrionales bacterium
           SWAT-3]
          Length = 465

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +  +         P      + L G +G GK+ L +   +    
Sbjct: 140 VNPKHKFNNFVEGKSNQLGLAAARQVADNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 199

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 200 GKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 259

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 260 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 319

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 320 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 374


>gi|322830734|ref|YP_004210761.1| chromosomal replication initiator protein DnaA [Rahnella sp. Y9602]
 gi|321165935|gb|ADW71634.1| chromosomal replication initiator protein DnaA [Rahnella sp. Y9602]
          Length = 463

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K+ +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 188 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 308 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362


>gi|212550358|ref|YP_002308675.1| chromosomal replication initiation protein DnaA [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212548596|dbj|BAG83264.1| chromosomal replication initiation protein DnaA [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 455

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 26/229 (11%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98
           +       + A  +       P +      + G  G GK+ L +   +K     F     
Sbjct: 128 NFFESDNNKVAYVIAQKVAQEPGKDFNPYFIYGGPGVGKTHLCHAIGNKVTEFHFQKRVI 187

Query: 99  SLDSILID--------------------TRKPVLLEDIDLLDFNDTQL---FHIINSIHQ 135
            + + L                          ++L+DI  L   +  L   FHI N +HQ
Sbjct: 188 YIPAHLFQIQYTDSIRKHEPNEFIHFYQGIDILILDDIHELSGKEKTLQAYFHIFNHLHQ 247

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
               +++TA   P         L SRLK    +++  PD +  +K++      R++ + +
Sbjct: 248 LGRQIILTADKIPAEIIGLEERLTSRLKWGLTIELQKPDLELRKKILNYRIRQRRLSVPE 307

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++  YI + +  +    E +V  +   +L     I    A +++ +  +
Sbjct: 308 EVIDYIAENVPENARDLEGIVTSLIAYSLVDNCEINLESAQKIVGKIVR 356


>gi|261819371|ref|YP_003257477.1| chromosomal replication initiation protein [Pectobacterium wasabiae
           WPP163]
 gi|261603384|gb|ACX85870.1| chromosomal replication initiator protein DnaA [Pectobacterium
           wasabiae WPP163]
          Length = 465

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 364


>gi|327482925|gb|AEA77332.1| Chromosomal replication initiator protein DnaA [Vibrio cholerae
           LMA3894-4]
          Length = 458

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 123 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 182

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 183 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 242

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 243 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 302

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 303 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 357


>gi|168187277|ref|ZP_02621912.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum C str. Eklund]
 gi|169294801|gb|EDS76934.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum C str. Eklund]
          Length = 449

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ ++   A      +   P+     + + G  G GK+ L +     I  +
Sbjct: 113 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 172

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   + LI++ K                +L++DI  +   +    + FH
Sbjct: 173 TPNAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 232

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ D  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 233 TFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADV 292

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I+  LAAE LK+
Sbjct: 293 ENLDIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREISVDLAAEALKD 345


>gi|118444635|ref|YP_879298.1| chromosomal replication initiation protein [Clostridium novyi NT]
 gi|166201879|sp|A0Q3U6|DNAA_CLONN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|118135091|gb|ABK62135.1| chromosomal replication initiator protein DnaA [Clostridium novyi
           NT]
          Length = 448

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ ++   A      +   P+     + + G  G GK+ L +     I  +
Sbjct: 112 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   + LI++ K                +L++DI  +   +    + FH
Sbjct: 172 TPNAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ D  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 232 TFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADV 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I+  LAAE LK+
Sbjct: 292 ENLDIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREISVDLAAEALKD 344


>gi|253686410|ref|YP_003015600.1| chromosomal replication initiator protein DnaA [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259645256|sp|C6DGH7|DNAA_PECCP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|251752988|gb|ACT11064.1| chromosomal replication initiator protein DnaA [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 465

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 364


>gi|255746805|ref|ZP_05420751.1| chromosomal replication initiator protein dnaA [Vibrio cholera CIRS
           101]
 gi|262155885|ref|ZP_06029007.1| chromosomal replication initiator protein dnaA [Vibrio cholerae
           INDRE 91/1]
 gi|262172778|ref|ZP_06040456.1| chromosomal replication initiator protein dnaA [Vibrio mimicus
           MB-451]
 gi|262402082|ref|ZP_06078646.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC586]
 gi|255735562|gb|EET90961.1| chromosomal replication initiator protein dnaA [Vibrio cholera CIRS
           101]
 gi|261893854|gb|EEY39840.1| chromosomal replication initiator protein dnaA [Vibrio mimicus
           MB-451]
 gi|262030337|gb|EEY48979.1| chromosomal replication initiator protein dnaA [Vibrio cholerae
           INDRE 91/1]
 gi|262351728|gb|EEZ00860.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC586]
          Length = 458

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 123 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 182

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 183 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 242

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 243 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 302

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 303 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 357


>gi|300719141|ref|YP_003743944.1| Chromosomal replication initiator protein [Erwinia billingiae
           Eb661]
 gi|299064977|emb|CAX62097.1| Chromosomal replication initiator protein [Erwinia billingiae
           Eb661]
          Length = 463

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 94/244 (38%), Gaps = 26/244 (10%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLA 81
             +L +        + D+ +   + + A          P      + L G +G GK+ L 
Sbjct: 119 PAELSYRSNVNTKHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLL 178

Query: 82  N-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF 121
           +     I + K  +            ++ K+L +  I+       +   +L++DI     
Sbjct: 179 HAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 238

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            +    + FH  N++ + +  +++T+  +P         L SR      V I  P+ +  
Sbjct: 239 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 298

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             +++K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E 
Sbjct: 299 VAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREA 358

Query: 239 LKET 242
           L++ 
Sbjct: 359 LRDL 362


>gi|330447269|ref|ZP_08310919.1| chromosomal replication initiator protein DnaA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491460|dbj|GAA05416.1| chromosomal replication initiator protein DnaA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 450

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 96/250 (38%), Gaps = 26/250 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGS 75
              + + +Q  +        + ++ +   + +  +         P      + L G +G 
Sbjct: 100 SPVQPEAQQGGYRSNVNPKHNFNNFVEGKSNQLGLAACRQVADNPGAAYNPLFLYGGTGL 159

Query: 76  GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115
           GK+ L +     I + K  +            ++ K+L +  I+       +   +L++D
Sbjct: 160 GKTHLLHAVGNAIANRKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 219

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I      +    + FH  N++ + +  +++T+  +P         L SR      V I  
Sbjct: 220 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEP 279

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+ +    +++K   D  I +  ++A +I +R+  ++   E  ++++   A   G  IT 
Sbjct: 280 PELETRVAILMKKAEDHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 339

Query: 233 SLAAEVLKET 242
               E L++ 
Sbjct: 340 DFVREALRDL 349


>gi|289577266|ref|YP_003475893.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           italicus Ab9]
 gi|297543499|ref|YP_003675801.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|289526979|gb|ADD01331.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           italicus Ab9]
 gi|296841274|gb|ADH59790.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 443

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  +V ++ + A     +    P++    + + G  G GK+ L +         
Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKH 168

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           +S        +++  + L+++ K                +L++DI  +   +    + FH
Sbjct: 169 QSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKKAQT 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++ AY+ ++++ ++   E  + ++   +      I   LA + LKE
Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKANIDLELAKQALKE 341


>gi|229508297|ref|ZP_04397801.1| chromosomal replication initiator protein dnaA [Vibrio cholerae BX
           330286]
 gi|229508864|ref|ZP_04398355.1| chromosomal replication initiator protein dnaA [Vibrio cholerae
           B33]
 gi|229515949|ref|ZP_04405406.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TMA
           21]
 gi|229517135|ref|ZP_04406581.1| chromosomal replication initiator protein dnaA [Vibrio cholerae
           RC9]
 gi|229520184|ref|ZP_04409611.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TM
           11079-80]
 gi|229530202|ref|ZP_04419591.1| chromosomal replication initiator protein dnaA [Vibrio cholerae
           12129(1)]
 gi|229606571|ref|YP_002877219.1| chromosomal replication initiation protein [Vibrio cholerae
           MJ-1236]
 gi|258622958|ref|ZP_05717973.1| chromosomal replication initiation protein [Vibrio mimicus VM573]
 gi|258626082|ref|ZP_05720933.1| chromosomal replication initiation protein [Vibrio mimicus VM603]
 gi|31340536|sp|Q9KVX6|DNAA_VIBCH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|229332335|gb|EEN97822.1| chromosomal replication initiator protein dnaA [Vibrio cholerae
           12129(1)]
 gi|229342778|gb|EEO07769.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TM
           11079-80]
 gi|229346198|gb|EEO11170.1| chromosomal replication initiator protein dnaA [Vibrio cholerae
           RC9]
 gi|229347049|gb|EEO12011.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TMA
           21]
 gi|229354139|gb|EEO19071.1| chromosomal replication initiator protein dnaA [Vibrio cholerae
           B33]
 gi|229354570|gb|EEO19492.1| chromosomal replication initiator protein dnaA [Vibrio cholerae BX
           330286]
 gi|229369226|gb|ACQ59649.1| chromosomal replication initiator protein dnaA [Vibrio cholerae
           MJ-1236]
 gi|258581608|gb|EEW06506.1| chromosomal replication initiation protein [Vibrio mimicus VM603]
 gi|258584741|gb|EEW09475.1| chromosomal replication initiation protein [Vibrio mimicus VM573]
          Length = 467

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 132 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 191

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 366


>gi|262278142|ref|ZP_06055927.1| DnaA family protein [Acinetobacter calcoaceticus RUH2202]
 gi|262258493|gb|EEY77226.1| DnaA family protein [Acinetobacter calcoaceticus RUH2202]
          Length = 232

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 21/228 (9%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D     +    V  +    +       + G +G+GKS L +   
Sbjct: 2   RQLQLDIEPQLDARISDF-SGPSWGNVVDAVRQLHAGLVSRFYIYGGAGTGKSHLLSAIC 60

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT-----------QLFHIINSI 133
           D       S I  SL  +L    + +  LE  DL+  +D             +FH++N  
Sbjct: 61  DSYLEIGKSAIKVSLLELLDAPIEAITSLEHYDLVALDDIESISGVPHWQKAVFHLMN-- 118

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190
             ++  L+ ++R  P+   + LPDL SRL  A  VK+  P          ++  + + R 
Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PSGSLYADRYALVTSVMSRRG 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           I  D+++  Y++           + V +++ L       ++ +   ++
Sbjct: 176 IHFDQQIVDYLLLHGPHQASLLLQTVAQLEKLLKGEKTKLSNATLRQI 223


>gi|110803386|ref|YP_697352.1| chromosomal replication initiation protein [Clostridium perfringens
           SM101]
 gi|123047633|sp|Q0SWX6|DNAA_CLOPS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|110683887|gb|ABG87257.1| chromosomal replication initiator protein DnaA [Clostridium
           perfringens SM101]
          Length = 457

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               +    ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 121 NPKYTFQSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQE 180

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128
                     S+K  +   + I    +    +  +    +L++DI  +   +    + FH
Sbjct: 181 NPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERTQEEFFH 240

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 241 TFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADV 300

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +  ++  YI  +++ ++   E  + ++   +      ++  LA+E LK+
Sbjct: 301 EGLSVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASEALKD 353


>gi|86147175|ref|ZP_01065491.1| chromosomal replication initiation protein [Vibrio sp. MED222]
 gi|218708098|ref|YP_002415719.1| chromosomal replication initiation protein [Vibrio splendidus
           LGP32]
 gi|254777922|sp|B7VGI4|DNAA_VIBSL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|85835059|gb|EAQ53201.1| chromosomal replication initiation protein [Vibrio sp. MED222]
 gi|218321117|emb|CAV17067.1| Chromosomal replication initiator protein dnaA [Vibrio splendidus
           LGP32]
          Length = 473

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 88/242 (36%), Gaps = 30/242 (12%)

Query: 31  SFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI 83
                         ++ +   + +  +         P      + L G +G GK+ L + 
Sbjct: 131 DLNHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHA 190

Query: 84  WSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND 123
             +                     ++ K+L +  I+       +   +L++DI      +
Sbjct: 191 VGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 250

Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + FH  N++ + +  +++T+  +P         L SR      V I  P+ +    
Sbjct: 251 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 310

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +++K   D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L+
Sbjct: 311 ILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALR 370

Query: 241 ET 242
           + 
Sbjct: 371 DL 372


>gi|326390364|ref|ZP_08211923.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993641|gb|EGD52074.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 443

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  +V ++ + A     +    P++    + + G  G GK+ L +         
Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKH 168

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           +S        +++  + L+++ K                +L++DI  +   +    + FH
Sbjct: 169 QSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKKAQS 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++ AY+ ++++ ++   E  + ++   +      I   LA   LKE
Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKSNIDLELAKHALKE 341


>gi|325265442|ref|ZP_08132165.1| DNA replication initiator protein, ATPase [Clostridium sp. D5]
 gi|324029300|gb|EGB90592.1| DNA replication initiator protein, ATPase [Clostridium sp. D5]
          Length = 456

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 102/281 (36%), Gaps = 36/281 (12%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---ID 57
           ++ + ED +  + +K++N     K   LF +       + D  +V S    A      + 
Sbjct: 78  ISFVTED-NVIIQEKKENVIKNKKSNALFENANLNAKYTFDTFVVGSNNNFAHAASLAVA 136

Query: 58  SWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT----- 107
             P      + + G  G GK+ L +     I  +          +++  + LID+     
Sbjct: 137 ESPGEIYNPLFIYGGVGLGKTHLMHSVAHFILENDPSKKVLYVTSETFTNELIDSLKIGK 196

Query: 108 ----------------RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
                              +L++DI  +   +    + FH  N +H     +++++   P
Sbjct: 197 NGNELAMTTFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNHLHVSGKQIIISSDKPP 256

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI---FIDKKLAAYIVQRM 205
                    L +R +   +  IS PD +    ++ K      +    I  ++  YI   +
Sbjct: 257 KDIETLEARLRTRFEWGLIADISSPDYETRMAILRKKEELDGLERYHIPDEVLQYIANNI 316

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + ++   E  ++K+  L+      I   LAAE LK+    D
Sbjct: 317 KSNIRELEGSLNKLIALSNLEKKPIDIPLAAEALKDMISPD 357


>gi|144149|gb|AAA73149.1| dnaA [Buchnera aphidicola]
          Length = 431

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 85/229 (37%), Gaps = 26/229 (11%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS- 94
           S ++ +   + + A          P      + L G +G GK+ L +   +   + +++ 
Sbjct: 101 SFENFIEGKSNQLARAAASQVAKNPGNSYNPLFLYGGTGLGKTHLLHAIGNGILAYKYNV 160

Query: 95  -------------------NIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINS 132
                              N A     +   +   +L++DI      +    + FH  N+
Sbjct: 161 KIIYMHSERFVQDMVKALQNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQEEFFHTFNA 220

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + + +  +++T+  +P         L SR      V I  P+ +    +++K   +  I 
Sbjct: 221 LLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIDPPELETRVAILIKKADENNIV 280

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  ++A +I + +  ++   E  ++++   A      IT     E L++
Sbjct: 281 LSDEVAFFIAKHLRSNVRELEGALNRVIVNANFTHRSITVEFVREALRD 329


>gi|21672306|ref|NP_660373.1| chromosomal replication initiator protein [Buchnera aphidicola str.
           Sg (Schizaphis graminum)]
 gi|231998|sp|P29434|DNAA_BUCAP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|2827014|gb|AAC38106.1| DNA biosynthesis initiating protein [Buchnera aphidicola]
 gi|21622905|gb|AAM67584.1| chromosomal replication initiator protein [Buchnera aphidicola str.
           Sg (Schizaphis graminum)]
          Length = 454

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 85/229 (37%), Gaps = 26/229 (11%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS- 94
           S ++ +   + + A          P      + L G +G GK+ L +   +   + +++ 
Sbjct: 124 SFENFIEGKSNQLARAAASQVAKNPGNSYNPLFLYGGTGLGKTHLLHAIGNGILAYKYNV 183

Query: 95  -------------------NIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINS 132
                              N A     +   +   +L++DI      +    + FH  N+
Sbjct: 184 KIIYMHSERFVQDMVKALQNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQEEFFHTFNA 243

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + + +  +++T+  +P         L SR      V I  P+ +    +++K   +  I 
Sbjct: 244 LLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIDPPELETRVAILIKKADENNIV 303

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  ++A +I + +  ++   E  ++++   A      IT     E L++
Sbjct: 304 LSDEVAFFIAKHLRSNVRELEGALNRVIVNANFTHRSITVEFVREALRD 352


>gi|242237461|ref|YP_002985642.1| chromosomal replication initiator protein DnaA [Dickeya dadantii
           Ech703]
 gi|242129518|gb|ACS83820.1| chromosomal replication initiator protein DnaA [Dickeya dadantii
           Ech703]
          Length = 462

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 186

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 187 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 307 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 361


>gi|305667262|ref|YP_003863549.1| chromosomal replication initiation protein [Maribacter sp.
           HTCC2170]
 gi|88709309|gb|EAR01542.1| chromosomal replication initiation protein [Maribacter sp.
           HTCC2170]
          Length = 474

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 92/259 (35%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + D+ L   +   A     +  + P      
Sbjct: 125 FVIPGIRNI----KIESQL------NPNYNFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKKNTRNDFIHFY 234

Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + +   +++D+  L          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QLIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++        + +   +  Y+ + ++ ++   E  +  +   
Sbjct: 295 KWGLSAELQNPDYETRISILKNKLYRDGVEMPNDIVDYVAKHIKTNIRELEGAIISLIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           +      +T  LA +V+++
Sbjct: 355 SSFNKKEVTIELAQQVVEK 373


>gi|254520696|ref|ZP_05132752.1| chromosomal replication initiator protein DnaA [Clostridium sp.
           7_2_43FAA]
 gi|226914445|gb|EEH99646.1| chromosomal replication initiator protein DnaA [Clostridium sp.
           7_2_43FAA]
          Length = 451

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW-----SD 86
               +    ++ ++   A      +   P+     + + G  G GK+ L +        +
Sbjct: 115 NPKYTFASFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLQN 174

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
            S +      ++   + LI+  +                +L++DI  +   +    + FH
Sbjct: 175 NSNAKVVYVSSEKFTNELINAIRDDKNEEFRNKYRNVDILLIDDIQFIAGKERTQEEFFH 234

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 235 TFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 294

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ +  ++  YI  +++ ++   E  + ++   +      IT  LA+E LK+
Sbjct: 295 EKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLTNRPITVELASEALKD 347


>gi|229524913|ref|ZP_04414318.1| chromosomal replication initiator protein dnaA [Vibrio cholerae bv.
           albensis VL426]
 gi|229338494|gb|EEO03511.1| chromosomal replication initiator protein dnaA [Vibrio cholerae bv.
           albensis VL426]
          Length = 467

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 132 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 191

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 366


>gi|294638327|ref|ZP_06716580.1| DNA biosynthesis protein [Edwardsiella tarda ATCC 23685]
 gi|291088580|gb|EFE21141.1| DNA biosynthesis protein [Edwardsiella tarda ATCC 23685]
          Length = 467

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 97/263 (36%), Gaps = 33/263 (12%)

Query: 13  PDKQKNDQPKNK-----EEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65
           P   +   P          Q  L +        + D+ +   + + A          P  
Sbjct: 104 PTSVRATSPTRPSWERVAAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGG 163

Query: 66  V---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID--- 106
               + L G +G GK+ L +     I + K  +            ++ K+L +  I+   
Sbjct: 164 AYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFK 223

Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
               +   +L++DI      +    + FH  N++ + +  +++T+  +P         L 
Sbjct: 224 RYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLK 283

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SR      V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++
Sbjct: 284 SRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRV 343

Query: 220 DNLALSRGMGITRSLAAEVLKET 242
              A   G  IT     E L++ 
Sbjct: 344 IANANFTGRAITIDFVREALRDL 366


>gi|296100372|ref|YP_003610518.1| chromosomal replication initiator protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295054831|gb|ADF59569.1| chromosomal replication initiator protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 442

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 107 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 166

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 167 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 226

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 227 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 286

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 287 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 341


>gi|157373147|ref|YP_001471747.1| chromosomal replication initiation protein [Shewanella sediminis
           HAW-EB3]
 gi|189083280|sp|A8FP46|DNAA_SHESH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157315521|gb|ABV34619.1| chromosomal replication initiator protein DnaA [Shewanella
           sediminis HAW-EB3]
          Length = 462

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 38  ISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKS 88
              ++ +   +       A+++ ++ P      + L G +G GK+ L +     I  +  
Sbjct: 131 YQFENFVEGKSNQLGKAAAMQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNP 189

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFHII 130
            +      ++     ++   +   +E+       +D L  +D            + FH  
Sbjct: 190 NAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFFHTF 249

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++ + +  +++T+  +P         L SR      V I  P+ +    ++++   +  
Sbjct: 250 NALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQESG 309

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 310 INLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 361


>gi|168207736|ref|ZP_02633741.1| chromosomal replication initiator protein DnaA [Clostridium
           perfringens E str. JGS1987]
 gi|170660929|gb|EDT13612.1| chromosomal replication initiator protein DnaA [Clostridium
           perfringens E str. JGS1987]
          Length = 457

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               +    ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 121 NPKYTFQSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQE 180

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128
                     S+K  +   + I    +    +  +    +L++DI  +   +    + FH
Sbjct: 181 NPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERTQEEFFH 240

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 241 TFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADV 300

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +  ++  YI  +++ ++   E  + ++   +      ++  LA+E LK+
Sbjct: 301 EGLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASEALKD 353


>gi|18308983|ref|NP_560917.1| chromosomal replication initiation protein [Clostridium perfringens
           str. 13]
 gi|110799791|ref|YP_694476.1| chromosomal replication initiation protein [Clostridium perfringens
           ATCC 13124]
 gi|168218306|ref|ZP_02643931.1| chromosomal replication initiator protein DnaA [Clostridium
           perfringens NCTC 8239]
 gi|169343457|ref|ZP_02864457.1| chromosomal replication initiator protein DnaA [Clostridium
           perfringens C str. JGS1495]
 gi|182627054|ref|ZP_02954779.1| chromosomal replication initiator protein DnaA [Clostridium
           perfringens D str. JGS1721]
 gi|38257694|sp|Q8XPG2|DNAA_CLOPE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123149082|sp|Q0TV64|DNAA_CLOP1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|18143658|dbj|BAB79707.1| chromosomal replication initiator protein [Clostridium perfringens
           str. 13]
 gi|110674438|gb|ABG83425.1| chromosomal replication initiator protein DnaA [Clostridium
           perfringens ATCC 13124]
 gi|169298409|gb|EDS80498.1| chromosomal replication initiator protein DnaA [Clostridium
           perfringens C str. JGS1495]
 gi|177907580|gb|EDT70219.1| chromosomal replication initiator protein DnaA [Clostridium
           perfringens D str. JGS1721]
 gi|182379693|gb|EDT77172.1| chromosomal replication initiator protein DnaA [Clostridium
           perfringens NCTC 8239]
          Length = 457

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               +    ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 121 NPKYTFQSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQE 180

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128
                     S+K  +   + I    +    +  +    +L++DI  +   +    + FH
Sbjct: 181 NPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERTQEEFFH 240

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 241 TFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADV 300

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +  ++  YI  +++ ++   E  + ++   +      ++  LA+E LK+
Sbjct: 301 EGLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASEALKD 353


>gi|170717207|ref|YP_001783356.1| chromosomal replication initiation protein [Haemophilus somnus
           2336]
 gi|168825336|gb|ACA30707.1| chromosomal replication initiator protein DnaA [Haemophilus somnus
           2336]
          Length = 455

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 27/230 (11%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +       P       + L G +G GK+ L +     I ++   +
Sbjct: 125 FDNFVEGKSNQLARAVAQKVAKNPGEQSANPLFLYGGTGLGKTHLLHAVGNGILANNPHA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A+      +   K                +L++DI      D    + FHI NS
Sbjct: 185 QVVYMHAERFMQSYVKALKSDRMDSFKRFYRTVDALLIDDIQFFAGKDGTQEEFFHIFNS 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR      V I  P+ +    +++K   ++ + 
Sbjct: 245 LFERGRQIILTSDRYPKEIEKIEDRLKSRFGWGISVAIEPPELETRVAILLKKAEEKNMV 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +++A +I  ++  ++   E  ++++   A   G  IT     E LK+ 
Sbjct: 305 LPEEVAMFIGGKLRTNVRELEGALNRVHAHAEFTGKAITIDFVRETLKDM 354


>gi|113460282|ref|YP_718341.1| chromosomal replication initiation protein [Haemophilus somnus
           129PT]
 gi|123031085|sp|Q0I0Y7|DNAA_HAES1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|112822325|gb|ABI24414.1| chromosomal replication initiator protein DnaA [Haemophilus somnus
           129PT]
          Length = 452

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 27/230 (11%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +       P       + L G +G GK+ L +     I ++   +
Sbjct: 122 FDNFVEGKSNQLARAVAQKVAKNPGEQSANPLFLYGGTGLGKTHLLHAVGNGILANNPHA 181

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A+      +   K                +L++DI      D    + FHI NS
Sbjct: 182 QVVYMHAERFMQSYVKALKSDRMDSFKRFYRTVDALLIDDIQFFAGKDGTQEEFFHIFNS 241

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR      V I  P+ +    +++K   ++ + 
Sbjct: 242 LFERGRQIILTSDRYPKEIEKIEDRLKSRFGWGISVAIEPPELETRVAILLKKAEEKNMV 301

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +++A +I  ++  ++   E  ++++   A   G  IT     E LK+ 
Sbjct: 302 LPEEVAMFIGGKLRTNVRELEGALNRVHAHAEFTGKAITIDFVRETLKDM 351


>gi|332304387|ref|YP_004432238.1| chromosomal replication initiator protein DnaA [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332171716|gb|AEE20970.1| chromosomal replication initiator protein DnaA [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 476

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSR 89
              D+ +   + + A          P +    + + G +G GK+ L +     I  +K+ 
Sbjct: 145 YKFDNFVEGKSNQLARAASKQVSDNPGKAYNPLFIYGGTGLGKTHLLHAVGNGIIDNKND 204

Query: 90  STRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIIN 131
           +T           ++ K+L +  I+       +   +L++DI      +    + FH  N
Sbjct: 205 ATVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFN 264

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++ + +  +++T+  +P         L SR      + I  P+ +    ++++   + +I
Sbjct: 265 ALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKALENKI 324

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 325 ILPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 375


>gi|269962691|ref|ZP_06177036.1| chromosomal replication initiation protein [Vibrio harveyi 1DA3]
 gi|269832614|gb|EEZ86728.1| chromosomal replication initiation protein [Vibrio harveyi 1DA3]
          Length = 468

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|84394505|ref|ZP_00993215.1| chromosomal replication initiation protein [Vibrio splendidus
           12B01]
 gi|84374858|gb|EAP91795.1| chromosomal replication initiation protein [Vibrio splendidus
           12B01]
          Length = 414

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 88/242 (36%), Gaps = 30/242 (12%)

Query: 31  SFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI 83
                         ++ +   + +  +         P      + L G +G GK+ L + 
Sbjct: 131 DLNHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHA 190

Query: 84  WSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND 123
             +                     ++ K+L +  I+       +   +L++DI      +
Sbjct: 191 VGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 250

Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + FH  N++ + +  +++T+  +P         L SR      V I  P+ +    
Sbjct: 251 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 310

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +++K   D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L+
Sbjct: 311 ILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALR 370

Query: 241 ET 242
           + 
Sbjct: 371 DL 372


>gi|331270706|ref|YP_004397198.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum BKT015925]
 gi|329127256|gb|AEB77201.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum BKT015925]
          Length = 450

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 114 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 173

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + V   L++DI  +   +    + FH
Sbjct: 174 TPSAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ D  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 234 TFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADV 293

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      ++  LAAE LK+
Sbjct: 294 ENLNIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREVSVDLAAEALKD 346


>gi|253681350|ref|ZP_04862148.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum D str. 1873]
 gi|253562588|gb|EES92039.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum D str. 1873]
          Length = 449

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 113 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 172

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + V   L++DI  +   +    + FH
Sbjct: 173 TPNAKVAYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 232

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ D  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 233 TFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADV 292

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      ++  LAAE LK+
Sbjct: 293 ENLNIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREVSVDLAAEALKD 345


>gi|327402012|ref|YP_004342850.1| chromosomal replication initiator protein DnaA [Fluviicola
           taffensis DSM 16823]
 gi|327317520|gb|AEA42012.1| chromosomal replication initiator protein DnaA [Fluviicola
           taffensis DSM 16823]
          Length = 476

 Score =  121 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 81/237 (34%), Gaps = 33/237 (13%)

Query: 35  CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82
               S ++ +       A      + +         +++ G  G GK+ LA+        
Sbjct: 140 NPAYSFENFVEGDCNRLARSAGYAVANKPGGTAFNPLLIYGGVGLGKTHLAHSIGIGVKN 199

Query: 83  ---------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFNDTQ---LF 127
                    + S+K        +     +  I        ++++D+      +      F
Sbjct: 200 QFPNKTVLYVSSEKFAHQFIDAVRNQTTNDFIHFYQMIDVLIIDDVQFFSGKEKTQDVFF 259

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N +HQ    +++T+   PV        L SR K      +S PD +    ++ K   
Sbjct: 260 HIFNHLHQNGKQIILTSDKPPVEMQGMEQRLLSRFKWGLSADLSTPDLETRIAIMEKKMY 319

Query: 188 DRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              I + +++  Y+   +    R +  A   +  +   +L     IT  LA +++ +
Sbjct: 320 GSGIELPREVVEYLAYSINTNIREMEGAMTSL--LAQASL-NKKAITLDLAKQMIDK 373


>gi|157736272|ref|YP_001488955.1| chromosomal replication initiator protein DnaA [Arcobacter butzleri
           RM4018]
 gi|167016897|sp|A8EQT0|DNAA_ARCB4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157698126|gb|ABV66286.1| chromosomal replication initiator protein DnaA [Arcobacter butzleri
           RM4018]
          Length = 438

 Score =  121 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI----WSDK 87
               + D  +V  + + A     +  + P      + + G +G GK+ L         +K
Sbjct: 103 NPSYTFDSFVVGPSNQMAYNASLAVANKPGIQYNPLFIYGGTGLGKTHLLQAVGNHAIEK 162

Query: 88  SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHII 130
             +  +  I + ++      +                +L++DI  L   +    + FH  
Sbjct: 163 GNTVIYVTIEQFMNDFTFSIKNKNMEHFRNKYRKCDVLLIDDIQFLSGKEQTQEEFFHTF 222

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +H     ++MT+   P      +  L SR +      + +P  +    +I K      
Sbjct: 223 NELHNAKKQIVMTSDRLPSQIAGLVDRLKSRFEWGLTADVQIPGLETKIAIIEKKSELNG 282

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I + +++  +I   ++ S+   E ++ +++  A      IT  +   +LKE 
Sbjct: 283 ICLSREIINFIATNLDNSIREIEGVLIRINASASLLNQEITLPMVQGLLKEQ 334


>gi|288550165|ref|ZP_05969496.2| hypothetical protein ENTCAN_08106 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315995|gb|EFC54933.1| DNA replication initiator protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 442

 Score =  121 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 107 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 166

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 167 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 226

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 227 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 286

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 287 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 341


>gi|153827642|ref|ZP_01980309.1| chromosomal replication initiator protein DnaA [Vibrio cholerae
           MZO-2]
 gi|149737880|gb|EDM52785.1| chromosomal replication initiator protein DnaA [Vibrio cholerae
           MZO-2]
          Length = 416

 Score =  121 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 123 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 182

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 183 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 242

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 243 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 302

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 303 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 357


>gi|146309668|ref|YP_001174742.1| chromosomal replication initiator protein DnaA [Enterobacter sp.
           638]
 gi|145316544|gb|ABP58691.1| chromosomal replication initiator protein DnaA [Enterobacter sp.
           638]
          Length = 483

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 148 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 207

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 208 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 267

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 268 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 327

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 328 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 382


>gi|325284917|ref|YP_004260707.1| Chromosomal replication initiator protein dnaA [Cellulophaga lytica
           DSM 7489]
 gi|324320371|gb|ADY27836.1| Chromosomal replication initiator protein dnaA [Cellulophaga lytica
           DSM 7489]
          Length = 474

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 94/259 (36%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + D+ L   +   A     +  + P      
Sbjct: 125 FVIPGIRNI----KIESQL------NPNYNFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKKNTRNDFIHFY 234

Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + +   +++D+  L          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QLIDILIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++        + + +++  Y+ + ++ ++   E  V  +   
Sbjct: 295 KWGLSAELQTPDYETRVSILKNKLYRDGVEMPEEIIDYVAKNIKSNIRELEGAVISLIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           +      IT  LA +++++
Sbjct: 355 SSFNKKEITIELAQQIVEK 373


>gi|1706462|sp|P49996|DNAA_VIBHA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|1006569|gb|AAA78257.1| DnaA [Vibrio harveyi]
          Length = 468

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 193 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|284034944|ref|YP_003384874.1| chromosomal replication initiator protein DnaA [Spirosoma linguale
           DSM 74]
 gi|283814237|gb|ADB36075.1| chromosomal replication initiator protein DnaA [Spirosoma linguale
           DSM 74]
          Length = 469

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 32/261 (12%)

Query: 13  PDKQKNDQPKNKEE-----QLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWP 63
           PD    D  K+  +      L          + D+ +       A      + +      
Sbjct: 108 PDNVNPDILKSPFQLKDLDSLTLDSYLNPSYTFDNYVEGDCNRLARSAGYAVAERPGVTS 167

Query: 64  SRVVILVGPSGSGKSCLANIWS------DKSRSTRFSNIAKSLDSILIDTRK-------- 109
              +++ G  G GK+ L           ++ +   +    K  +  L   R         
Sbjct: 168 FNPLMIYGGVGLGKTHLVQAIGNFIKNNNQGKFVLYVTSEKFTNQFLNAVRSDGIRDFTS 227

Query: 110 ------PVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                  ++++D+  L   +      FHI N +HQ    ++MT+   P +       L S
Sbjct: 228 FYMQVDVLVIDDVQFLQKKEKTQEIFFHIFNHLHQSGKQIIMTSDRAPRALDGLEDRLLS 287

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R K      +  PD +    +I K      I+ID  +  Y+   +  ++   E ++  + 
Sbjct: 288 RFKWGLSADLQTPDLETRIAIIQKKLQAEGIYIDDTVIEYLAHSVNTNVRELEGVIVSLM 347

Query: 221 NLALSRGMGITRSLAAEVLKE 241
             A      I   LA + L+ 
Sbjct: 348 AQASLNRREIDLELAKQTLRN 368


>gi|150025276|ref|YP_001296102.1| chromosomal replication initiator protein DnaA [Flavobacterium
           psychrophilum JIP02/86]
 gi|166201882|sp|A6GYW8|DNAA_FLAPJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|149771817|emb|CAL43291.1| Chromosomal replication initiator protein DnaA [Flavobacterium
           psychrophilum JIP02/86]
          Length = 478

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 97/262 (37%), Gaps = 32/262 (12%)

Query: 12  VPDKQKNDQPKNKE-----EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
           VP +QKN + +N         L          S D+ L   +   A     +  + P   
Sbjct: 115 VPVQQKNPELRNPFIIPGIRNLKIESQLNANYSFDNFLEGDSNRLARSAGMAVANKPGGT 174

Query: 67  ----VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILI 105
               +++ G  G GK+ LA+                   ++        ++ K+  +  I
Sbjct: 175 SFNPLLIFGGVGLGKTHLAHAIGVEVKEKYPEKTVLYISAEIFTQQYIESVKKNNRNDFI 234

Query: 106 DTRKPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
              + +   +++D+  L          FHI N +HQ    +++T+   PV        L 
Sbjct: 235 HFYQLIDVLIIDDVQFLSGKTGTQDVFFHIFNYLHQNGKQVILTSDKAPVDMQDIEQRLL 294

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SR K     +I  PD +    ++  +     + + +++  Y+ + ++ ++   E  +  +
Sbjct: 295 SRFKWGLSAEIHQPDYETRISILKNILYRDGVEMPEEIIEYVARNIKSNVRELEGAIISL 354

Query: 220 DNLALSRGMGITRSLAAEVLKE 241
              +      +T  LA +V+++
Sbjct: 355 IAQSSFNKKEVTLELAKQVVEK 376


>gi|238917984|ref|YP_002931498.1| chromosomal replication initiator protein DnaA, [Edwardsiella
           ictaluri 93-146]
 gi|259645249|sp|C5BHC5|DNAA_EDWI9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|238867552|gb|ACR67263.1| chromosomal replication initiator protein DnaA, putative
           [Edwardsiella ictaluri 93-146]
          Length = 463

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 188 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 308 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362


>gi|295095340|emb|CBK84430.1| chromosomal replication initiator protein DnaA [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 441

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 106 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 165

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 166 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 225

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 226 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 285

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 286 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 340


>gi|225377585|ref|ZP_03754806.1| hypothetical protein ROSEINA2194_03235 [Roseburia inulinivorans DSM
           16841]
 gi|225210561|gb|EEG92915.1| hypothetical protein ROSEINA2194_03235 [Roseburia inulinivorans DSM
           16841]
          Length = 451

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 95/272 (34%), Gaps = 35/272 (12%)

Query: 10  FFVPDKQKNDQP------KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWP 60
           F +P++ +N +P      K  E +           + D  +V S    A      +   P
Sbjct: 81  FILPEQTRNIRPSNNKGKKTPEPEASKRSNLNPNYTFDTFVVGSNNRFAQSASLAVAESP 140

Query: 61  SWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKP----- 110
                 + + G  G GK+ L +     I      +      ++   + +I++ +      
Sbjct: 141 GEAYNPLYIYGGPGLGKTHLMHSIGHFILERNPEAKVLYVTSEEFTNEVIESIRSGNASA 200

Query: 111 -------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        ++++D+  +   +    + FH  N++H     +++T+   P      
Sbjct: 201 MNKFREKYRTIDVLMIDDVQFIIGKESTQEEFFHTFNALHSAGKQIILTSDKPPKDMETL 260

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              + SR +   +  I  PD +    ++ +      + +   +  YI   ++ ++   E 
Sbjct: 261 EERIRSRFEWGLMADIGAPDYETRMAILRRKVESDDMSLSDDILNYIANNIKSNIRELEG 320

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            ++K+   +      IT  +A + L+     D
Sbjct: 321 ALNKLLAYSNLEKTEITMEIAKKELQNIITPD 352


>gi|153948|gb|AAA02815.1| dnaA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 466

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%)

Query: 8   YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54
           ++   P +    QP+                 +  +     +  + D+ +   + + A  
Sbjct: 92  HNVVAPAQTTTTQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 151

Query: 55  LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98
                   P      + L G +G GK+ L +     I + K  +            ++ K
Sbjct: 152 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211

Query: 99  SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           +L +  I+       +   +L++DI      +    + FH  N++ + +  +++T+  +P
Sbjct: 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 271

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR      V I  P+ +    +++K   +  I +  ++A +I +R+  +
Sbjct: 272 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 331

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +   E  ++++   A   G  IT     E L++ 
Sbjct: 332 VRELEGALNRVIANANFTGRAITIDFVREALRDL 365


>gi|261250639|ref|ZP_05943214.1| chromosomal replication initiator protein dnaA [Vibrio orientalis
           CIP 102891]
 gi|260939208|gb|EEX95195.1| chromosomal replication initiator protein dnaA [Vibrio orientalis
           CIP 102891]
          Length = 459

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 89/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                   + +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 124 VNPKHKFTNFVEGKSNQLGLAAARQVSDNPGSAYNPLFLYGGTGLGKTHLLHAVGNAIVD 183

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 184 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 243

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 244 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 303

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 304 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 358


>gi|256751455|ref|ZP_05492333.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749674|gb|EEU62700.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 443

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  +V ++ + A     +    P++    + + G  G GK+ L +         
Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKH 168

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           +S        +++  + L+++ K                +L++DI  +   +    + FH
Sbjct: 169 QSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKKAQT 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++ AY+ ++++ ++   E  + ++   +      I   LA   LKE
Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKTNIDLELAKHALKE 341


>gi|255033818|ref|YP_003084439.1| chromosomal replication initiator protein DnaA [Dyadobacter
           fermentans DSM 18053]
 gi|254946574|gb|ACT91274.1| chromosomal replication initiator protein DnaA [Dyadobacter
           fermentans DSM 18053]
          Length = 480

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 90/276 (32%), Gaps = 36/276 (13%)

Query: 1   MNLMK-EDYSFFVPDKQKNDQP------KNKEEQLFFSFPRCLGISRDDLLVHSAIEQA- 52
           MN+   +  ++  PD    D        +  ++ L          S D+ +       A 
Sbjct: 105 MNVSTQKSPNYSKPDNFSTDPRMGATVREKDQDSLTLDTYLNPNYSFDNFIEGDCNRLAR 164

Query: 53  ---VRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTR 92
                +           +++ G  G GK+ L                     S+K  +  
Sbjct: 165 SAGFAVAQRPGLTSFNPLMMYGGVGLGKTHLVQAIGNYITNHYENKLVLYVSSEKFTNQF 224

Query: 93  FSNIAKSLDSILIDTR---KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTART 146
            ++I  +      D       + ++D+  L   +      FHI N +HQ    ++MT+  
Sbjct: 225 INSIRNNTLQEFTDFYMKVDVLAIDDVQFLSGKEKTQDTFFHIFNHLHQLGKQIIMTSDR 284

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P         L SR K      +  PD +    +I K      I ID  +  YI   + 
Sbjct: 285 PPRELQGLQDRLLSRFKWGLTADLQAPDFETRIAIIQKKIQSEGISIDYDVIEYIAHSVN 344

Query: 207 RSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++   E  +V  M   +L+R   I   LA   L+ 
Sbjct: 345 SNVRELEGVIVSLMAQASLTR-RNIDVELAKNTLRN 379


>gi|119713116|gb|ABL97185.1| putative DNA replication factor [uncultured marine bacterium
           EB0_49D07]
          Length = 234

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 90/232 (38%), Gaps = 14/232 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAI-EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           N   QL F F      S D         E   RL D   S  +  +I+ G  GSGKS L 
Sbjct: 2   NNPTQLIFPFQVNQKASFDSFFCSPDNIELMSRLTDLASSENTDELIINGAEGSGKSFLM 61

Query: 82  NIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLL---DFNDTQLFHI 129
               ++  S+        ++  +         + +   V ++D+ L+   +  +T LF++
Sbjct: 62  QAICNELSSSGKQFAFIPMNKAINMGVEIFQNLASLDAVCIDDLQLILSKEEWETALFNL 121

Query: 130 INSIHQYDSSLLMT-ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           IN   Q   SL+++      +     LPDL SR+K    +K+    D+ L + +  +   
Sbjct: 122 INQCQQSYCSLILSFGGNQSLEDSTQLPDLLSRIKRMEFMKLQAVLDESLNQALGFVSQQ 181

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             I I+K    +++    R        +  +D  A S    IT  L  E L 
Sbjct: 182 LDINIEKAEIEFLLNHQTREFSILVDNLISLDKQAASLKRKITIPLIKETLN 233


>gi|156972777|ref|YP_001443684.1| chromosomal replication initiation protein [Vibrio harveyi ATCC
           BAA-1116]
 gi|166215368|sp|A7N1E9|DNAA_VIBHB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|156524371|gb|ABU69457.1| hypothetical protein VIBHAR_00442 [Vibrio harveyi ATCC BAA-1116]
          Length = 468

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 193 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|37678195|ref|NP_932804.1| chromosomal replication initiation protein [Vibrio vulnificus
           YJ016]
 gi|61212682|sp|Q7MQJ7|DNAA_VIBVY RecName: Full=Chromosomal replication initiator protein DnaA
 gi|37196934|dbj|BAC92775.1| chromosomal DNA replication initiator DnaA [Vibrio vulnificus
           YJ016]
          Length = 468

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +  +         P      + L G +G GK+ L +   +    
Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|126642638|ref|YP_001085622.1| putative chromosomal replication initiator DnaA-type [Acinetobacter
           baumannii ATCC 17978]
          Length = 205

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 78/189 (41%), Gaps = 20/189 (10%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFND 123
               + G +G+GKS L +   D       S I  SL  +L    + +  LE  DL+  +D
Sbjct: 13  NRFYIYGGAGTGKSHLLSAICDSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDD 72

Query: 124 T-----------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
                        +FH++N    ++  L+ ++R  P+   + LPDL SRL  A  VK+  
Sbjct: 73  IESISGVPHWQKAVFHLMN---NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV-- 127

Query: 173 PDDDF---LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           P          ++  + A R I  D+++  Y++           + V +++ L       
Sbjct: 128 PSGSLYADRYALVTSVMARRGIHFDQQIVDYLLLHGPHQASILLQTVAQLEKLLKGEKTK 187

Query: 230 ITRSLAAEV 238
           ++ +   ++
Sbjct: 188 LSNATLRQI 196


>gi|262273130|ref|ZP_06050947.1| chromosomal replication initiator protein dnaA [Grimontia hollisae
           CIP 101886]
 gi|262222886|gb|EEY74194.1| chromosomal replication initiator protein dnaA [Grimontia hollisae
           CIP 101886]
          Length = 461

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD---- 86
                   + +   + + A+         P      + L G +G GK+ L +   +    
Sbjct: 126 VNPKHKFTNFVEGKSNQLALAAARQVADNPGAAYNPLFLYGGTGLGKTHLLHAVGNAISD 185

Query: 87  -KSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLF 127
            K+ +      ++     ++                    +L++DI      +    + F
Sbjct: 186 RKADARVVYMHSERFVQDMVKALQNNQIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 245

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 246 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 305

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 306 DHNIRLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 360


>gi|326423789|ref|NP_759961.2| chromosomal replication initiator protein DnaA [Vibrio vulnificus
           CMCP6]
 gi|31340045|sp|Q8DDI9|DNAA_VIBVU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|319999154|gb|AAO09488.2| chromosomal replication initiator protein DnaA [Vibrio vulnificus
           CMCP6]
          Length = 468

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +  +         P      + L G +G GK+ L +   +    
Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|320157816|ref|YP_004190195.1| chromosomal replication initiator protein DnaA [Vibrio vulnificus
           MO6-24/O]
 gi|319933128|gb|ADV87992.1| chromosomal replication initiator protein DnaA [Vibrio vulnificus
           MO6-24/O]
          Length = 445

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +  +         P      + L G +G GK+ L +   +    
Sbjct: 110 VNPKHKFNNFVEGKSNQLGLAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIVD 169

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 170 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 229

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 230 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 289

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 290 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 344


>gi|167957210|ref|ZP_02544284.1| chromosomal replication initiator protein DnaA [candidate division
           TM7 single-cell isolate TM7c]
          Length = 451

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 80/214 (37%), Gaps = 25/214 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D+ +V S+ + A     +  S P      + L G SG GK+ L       I   
Sbjct: 117 NPRYTFDNFIVGSSNDLAYAACQAVASHPGEKYNPLYLYGGSGLGKTHLMQAVGNEIIKK 176

Query: 87  KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHI 129
           +  +       ++  +  +D+ +               ++++D+  +   +    + FH 
Sbjct: 177 QPSARVLYITTETFVNEFLDSIRFKKKGFSDKYRNVDVLIVDDMQFIAGKEKTQDEFFHT 236

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +HQ +  +++++   P S       L SR +    + I +PD +    ++       
Sbjct: 237 FNDLHQNNKQIIISSDKPPKSIPTLTDRLRSRFEWGMAIDIQMPDYETRCAIVKAKAEIS 296

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              +D  +  Y+    + ++   E  ++++   A
Sbjct: 297 NTELDSDVVEYLATNFKTNIRELEGALNRLLAYA 330


>gi|311277333|ref|YP_003939564.1| chromosomal replication initiator protein DnaA [Enterobacter
           cloacae SCF1]
 gi|308746528|gb|ADO46280.1| chromosomal replication initiator protein DnaA [Enterobacter
           cloacae SCF1]
          Length = 465

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 130 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 364


>gi|255691401|ref|ZP_05415076.1| ATPase [Bacteroides finegoldii DSM 17565]
 gi|260623047|gb|EEX45918.1| ATPase [Bacteroides finegoldii DSM 17565]
          Length = 473

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 30/264 (11%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
                +  +  +    Q     P      + ++ +   + + +  + ++    P      
Sbjct: 110 IFDGNKAPNFLQAPAVQ-DLD-PHLNPNYNFENFIEGYSNKLSRSVAEAVALKPGGTAFN 167

Query: 67  -VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID------------------- 106
            + L G SG GK+ LAN    K +          + + L                     
Sbjct: 168 PLFLYGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFY 227

Query: 107 -TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
            T   ++++DI             FHI N +HQ    L++T+   PV        L +R 
Sbjct: 228 QTIDVLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRF 287

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K   V ++  P  +  + ++        +   +++  YI + +  S+   E +V  +   
Sbjct: 288 KWGMVAELEKPTVELRKNILRNKIHRDGLQFPEEVIDYIAENVNESVRDLEGIVIAIMAR 347

Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246
           +      I   LA  ++      +
Sbjct: 348 STIFNKEIDMDLAQHIVHGVVHNE 371


>gi|304398068|ref|ZP_07379943.1| chromosomal replication initiator protein DnaA [Pantoea sp. aB]
 gi|304354354|gb|EFM18726.1| chromosomal replication initiator protein DnaA [Pantoea sp. aB]
          Length = 471

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 136 VNNRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 195

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370


>gi|16767123|ref|NP_462738.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56415711|ref|YP_152786.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161616956|ref|YP_001590921.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167548872|ref|ZP_02342631.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167992432|ref|ZP_02573530.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233393|ref|ZP_02658451.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168235478|ref|ZP_02660536.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168260377|ref|ZP_02682350.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464831|ref|ZP_02698723.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168818302|ref|ZP_02830302.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194442253|ref|YP_002043088.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448643|ref|YP_002047871.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194470761|ref|ZP_03076745.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736495|ref|YP_002116782.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248955|ref|YP_002148776.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197364639|ref|YP_002144276.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|200388152|ref|ZP_03214764.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204928789|ref|ZP_03219988.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|238913091|ref|ZP_04656928.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|20141364|sp|P35891|DNAA_SALTY RecName: Full=Chromosomal replication initiator protein DnaA
 gi|71151803|sp|Q5PKU6|DNAA_SALPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189044603|sp|A9MX77|DNAA_SALPB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735838|sp|B5EYX2|DNAA_SALA4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735842|sp|B4TAU9|DNAA_SALHS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735843|sp|B4SYA8|DNAA_SALNS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735844|sp|B5BIL4|DNAA_SALPK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735845|sp|B4TN07|DNAA_SALSV RecName: Full=Chromosomal replication initiator protein DnaA
 gi|16422412|gb|AAL22697.1| DNA replication initiator protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56129968|gb|AAV79474.1| chromosomal replication initiator protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161366320|gb|ABX70088.1| hypothetical protein SPAB_04777 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194400916|gb|ACF61138.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194406947|gb|ACF67166.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194457125|gb|EDX45964.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711997|gb|ACF91218.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195632396|gb|EDX50880.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197096116|emb|CAR61712.1| chromosomal replication initiator protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197212658|gb|ACH50055.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197291232|gb|EDY30584.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199605250|gb|EDZ03795.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204322222|gb|EDZ07420.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205325509|gb|EDZ13348.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329368|gb|EDZ16132.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332569|gb|EDZ19333.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205344670|gb|EDZ31434.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205350503|gb|EDZ37134.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|261248979|emb|CBG26836.1| chromosomal replication initiator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267996124|gb|ACY91009.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160371|emb|CBW19896.1| chromosomal replication initiator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312914968|dbj|BAJ38942.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088259|emb|CBY98021.1| Chromosomal replication initiator protein dnaA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225556|gb|EFX50611.1| Chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322617249|gb|EFY14154.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619063|gb|EFY15949.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625130|gb|EFY21958.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322630181|gb|EFY26952.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634393|gb|EFY31127.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635278|gb|EFY31993.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642898|gb|EFY39482.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647622|gb|EFY44109.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650572|gb|EFY46979.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656402|gb|EFY52694.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661582|gb|EFY57805.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322661663|gb|EFY57882.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668223|gb|EFY64381.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672848|gb|EFY68956.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322674971|gb|EFY71057.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322683661|gb|EFY79674.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687737|gb|EFY83706.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192048|gb|EFZ77283.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200530|gb|EFZ85608.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204956|gb|EFZ89941.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206699|gb|EFZ91656.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211771|gb|EFZ96604.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323218633|gb|EGA03340.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220034|gb|EGA04504.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224804|gb|EGA09069.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323232487|gb|EGA16589.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235262|gb|EGA19347.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323241050|gb|EGA25087.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241400|gb|EGA25432.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248631|gb|EGA32561.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252070|gb|EGA35930.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258626|gb|EGA42289.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262343|gb|EGA45901.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323268179|gb|EGA51655.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270593|gb|EGA54038.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|332990688|gb|AEF09671.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 466

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%)

Query: 8   YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54
           ++   P +    QP+                 +  +     +  + D+ +   + + A  
Sbjct: 92  HNVVAPAQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 151

Query: 55  LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98
                   P      + L G +G GK+ L +     I + K  +            ++ K
Sbjct: 152 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211

Query: 99  SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           +L +  I+       +   +L++DI      +    + FH  N++ + +  +++T+  +P
Sbjct: 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 271

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR      V I  P+ +    +++K   +  I +  ++A +I +R+  +
Sbjct: 272 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 331

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +   E  ++++   A   G  IT     E L++ 
Sbjct: 332 VRELEGALNRVIANANFTGRAITIDFVREALRDL 365


>gi|283787598|ref|YP_003367463.1| chromosomal replication initiator protein [Citrobacter rodentium
           ICC168]
 gi|282951052|emb|CBG90730.1| chromosomal replication initiator protein [Citrobacter rodentium
           ICC168]
          Length = 468

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 101/274 (36%), Gaps = 40/274 (14%)

Query: 9   SFFVPDKQKNDQPKNK--------------EEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54
           +F  P +    QP+                  +  +     +  + D+ +   + + A  
Sbjct: 94  NFAAPAQVTQAQPQRPEPTASRPGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 153

Query: 55  LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98
                   P      + L G +G GK+ L +     I + K  +            ++ K
Sbjct: 154 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 213

Query: 99  SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           +L +  I+       +   +L++DI      +    + FH  N++ + +  +++T+  +P
Sbjct: 214 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 273

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR      V I  P+ +    +++K   +  I +  ++A +I +R+  +
Sbjct: 274 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 333

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +   E  ++++   A   G  IT     E L++ 
Sbjct: 334 VRELEGALNRVIANANFTGRAITIDFVREALRDL 367


>gi|205359063|ref|ZP_02666990.2| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205338899|gb|EDZ25663.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|323132199|gb|ADX19629.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 470

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%)

Query: 8   YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54
           ++   P +    QP+                 +  +     +  + D+ +   + + A  
Sbjct: 96  HNVVAPAQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 155

Query: 55  LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98
                   P      + L G +G GK+ L +     I + K  +            ++ K
Sbjct: 156 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 215

Query: 99  SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           +L +  I+       +   +L++DI      +    + FH  N++ + +  +++T+  +P
Sbjct: 216 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 275

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR      V I  P+ +    +++K   +  I +  ++A +I +R+  +
Sbjct: 276 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 335

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +   E  ++++   A   G  IT     E L++ 
Sbjct: 336 VRELEGALNRVIANANFTGRAITIDFVREALRDL 369


>gi|116619146|ref|YP_821302.1| chromosomal replication initiator protein DnaA [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116222308|gb|ABJ81017.1| chromosomal replication initiator protein DnaA [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 437

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87
               + +  +V +  + A     S  + PSR    + L G  G GK+ L +    +    
Sbjct: 104 NPKFTFNSFVVGACNQFAHAAAKSVATNPSRSYNPLFLYGGVGMGKTHLMHAIGRQLIDQ 163

Query: 88  --SRSTRFSNIAKSLDSILI--------------DTRKPVLLEDIDLLDFND---TQLFH 128
             S    +++  + ++ ++                    +L++DI LL   +    + FH
Sbjct: 164 FGSMRIIYTSSERFMNEMISCIRTERMQQFHQRYREADVLLIDDIQLLGNKERTQEEFFH 223

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N +H +   +++++ + P      L  L SR +   +  I  PD +    ++ K    
Sbjct: 224 TFNELHDHQKQIVISSDSPPKDIPGLLERLRSRFEWGLMADIQPPDLETKMAILDKKAEI 283

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             + +   +  ++  + + ++   E  + K+   +   G  I   +A +VLK
Sbjct: 284 EGVELPDDVRTFMASKTKSNVRELEGALVKLIAYSSLTGTPIHLQMAQQVLK 335


>gi|323143754|ref|ZP_08078422.1| putative DnaA regulatory inactivator Hda [Succinatimonas hippei YIT
           12066]
 gi|322416467|gb|EFY07133.1| putative DnaA regulatory inactivator Hda [Succinatimonas hippei YIT
           12066]
          Length = 236

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLA 81
               Q   +          D  V      AV L+ ++     + +  + GP   GKS L 
Sbjct: 6   KAPRQEPLALKINDE-GFFDSFVPGGNRAAVDLLHEAVLRNKNELFFVFGPQHVGKSHLL 64

Query: 82  NIWSDK-----SRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFN---DTQLFHII 130
           N    +     S +           S L+ + +P   ++L++ID +  +   +  LF + 
Sbjct: 65  NALFREIKDPSSNAFFVDLRLVKDISPLLLSVEPYPIIILDNIDAIAGDSDWELALFGLY 124

Query: 131 NSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N        + + +ART          DL +R +    + +   D+      +      R
Sbjct: 125 NRWIDKGEGTFIASARTSADLIPFLRKDLNTRFENGVSLPLDFLDEKSCCDALQIRAKKR 184

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              I +K+AA++V+   R +    K++D++D  +LS    +T     +VL
Sbjct: 185 GFIIPEKVAAFLVKHSNRDMDSLVKILDRLDEASLSEQHELTVPFVKKVL 234


>gi|308188765|ref|YP_003932896.1| Chromosomal replication initiator protein dnaA [Pantoea vagans
           C9-1]
 gi|308059275|gb|ADO11447.1| Chromosomal replication initiator protein dnaA [Pantoea vagans
           C9-1]
          Length = 471

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 136 VNNRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 195

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370


>gi|326625574|gb|EGE31919.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 443

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%)

Query: 8   YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54
           ++   P +    QP+                 +  +     +  + D+ +   + + A  
Sbjct: 69  HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 128

Query: 55  LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98
                   P      + L G +G GK+ L +     I + K  +            ++ K
Sbjct: 129 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 188

Query: 99  SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           +L +  I+       +   +L++DI      +    + FH  N++ + +  +++T+  +P
Sbjct: 189 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 248

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR      V I  P+ +    +++K   +  I +  ++A +I +R+  +
Sbjct: 249 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 308

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +   E  ++++   A   G  IT     E L++ 
Sbjct: 309 VRELEGALNRVIANANFTGRAITIDFVREALRDL 342


>gi|90581124|ref|ZP_01236923.1| chromosomal replication initiation protein [Vibrio angustum S14]
 gi|90437645|gb|EAS62837.1| chromosomal replication initiation protein [Vibrio angustum S14]
          Length = 466

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWS 85
                + ++ +   + +  +         P      + L G +G GK+ L +     I +
Sbjct: 131 VNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIAN 190

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 251 HTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 310

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 311 DHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365


>gi|323487687|ref|ZP_08092945.1| chromosomal replication initiation protein [Planococcus donghaensis
           MPA1U2]
 gi|323398421|gb|EGA91209.1| chromosomal replication initiation protein [Planococcus donghaensis
           MPA1U2]
          Length = 447

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 99/268 (36%), Gaps = 37/268 (13%)

Query: 10  FFVPDKQKNDQ-----PKNKE---EQLFFSFP--RCLGISRDDLLVHSAIEQAVRLIDSW 59
           F VP  Q  D      P+ K    +Q  F  P       + D  ++ S    A     + 
Sbjct: 78  FVVPKDQDMDDFQLPAPRVKPGQDQQHEF-LPGMLNPKYTFDTFVIGSGNRFAHAASLAV 136

Query: 60  PSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKS 99
              P++    + + G  G GK+ L +                   S+K  +   ++I  +
Sbjct: 137 AEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLEHNPNAKVVYLSSEKFTNEFINSIRDN 196

Query: 100 LDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                 D  + V   L++DI  L   +    + FH  N++H+    +++++   P     
Sbjct: 197 KTGEFRDKYRSVDILLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIIISSDRPPKEIPT 256

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR +   +  I+ PD +    ++ K      + I   +  YI   ++ ++   E
Sbjct: 257 LEDRLRSRFEWGLITDITPPDLETRIAILRKKAKADGLDIPNDVMTYIANSIDSNIRELE 316

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + ++   +      ++  LA+E LK+
Sbjct: 317 GALIRVVAYSSLINRDMSAELASEALKD 344


>gi|320180043|gb|EFW54985.1| Chromosomal replication initiator protein DnaA [Shigella boydii
           ATCC 9905]
 gi|320185533|gb|EFW60299.1| Chromosomal replication initiator protein DnaA [Shigella flexneri
           CDC 796-83]
          Length = 439

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 104 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 163

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 164 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 223

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 224 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 283

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 284 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 338


>gi|251787653|ref|YP_003002374.1| chromosomal replication initiator protein DnaA [Dickeya zeae
           Ech1591]
 gi|247536274|gb|ACT04895.1| chromosomal replication initiator protein DnaA [Dickeya zeae
           Ech1591]
          Length = 464

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 129 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 188

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 189 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 248

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 249 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 308

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 309 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 363


>gi|317499294|ref|ZP_07957567.1| chromosomal replication initiator protein DnaA [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|291558404|emb|CBL37204.1| chromosomal replication initiator protein DnaA [butyrate-producing
           bacterium SSC/2]
 gi|316893463|gb|EFV15672.1| chromosomal replication initiator protein DnaA [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 447

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 97/269 (36%), Gaps = 28/269 (10%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVRL---I 56
           +L  + Y      +++ ++P+          +       + D  ++      A      +
Sbjct: 78  DLTGKKYDIEFELEKEGEKPQETPAAAPEHDNNNLNPRYTFDTFVIGDNNRMAHAASIAV 137

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKP- 110
              P+     + L G +G GK+ L +     I    S        ++   + +I++ +  
Sbjct: 138 AEAPAEAYNPLFLYGGAGLGKTHLMHSIAHYIIEHNSSLNVLYVTSEDFTNEVINSIQHK 197

Query: 111 --------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         +L++DI  +   +    + FH  N+++     +++++   P    V
Sbjct: 198 KQEELRSKYRNIDVLLVDDIQFVIGKESTQQEFFHTFNALYNSKKQIILSSDKPPKELDV 257

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR      V I  P+ +    ++ K      I+ID ++  YI   ++ ++   E
Sbjct: 258 LEERLRSRFSWGLPVDIQPPNYETKVAILRKRAELDNIYIDDEIFDYIATHIKSNIRDLE 317

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++K+   +      I   L+   L++ 
Sbjct: 318 GALNKIKVYSKLNKKPIDLELSKIALQDL 346


>gi|260174144|ref|ZP_05760556.1| chromosomal replication initiation protein [Bacteroides sp. D2]
 gi|315922409|ref|ZP_07918649.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696284|gb|EFS33119.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 470

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 28/242 (11%)

Query: 33  PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87
           P      + ++ +   + + +  + ++    P       + L G SG GK+ LAN    K
Sbjct: 130 PHLNPNYNFENFIEGYSNKLSRSVAEAVAQKPGGTAFNPLFLYGASGVGKTHLANAIGTK 189

Query: 88  SRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLDF---NDT 124
            +          + + L                      T   ++++DI           
Sbjct: 190 IKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAGVTKTQN 249

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             FHI N +HQ    L++T+   PV        L +R K   V ++  P  +  + ++  
Sbjct: 250 NFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGMVAELEKPTVELRKNILRN 309

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 +    ++  YI + +  S+   E +V  +   +      I   LA  ++     
Sbjct: 310 KIHRDGLQFPAEVIDYIAENVNESVRDLEGIVIAIMARSTIFNKEIDLDLAQHIVHGVVH 369

Query: 245 CD 246
            +
Sbjct: 370 NE 371


>gi|167766864|ref|ZP_02438917.1| hypothetical protein CLOSS21_01381 [Clostridium sp. SS2/1]
 gi|167711412|gb|EDS21991.1| hypothetical protein CLOSS21_01381 [Clostridium sp. SS2/1]
          Length = 444

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 97/269 (36%), Gaps = 28/269 (10%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVRL---I 56
           +L  + Y      +++ ++P+          +       + D  ++      A      +
Sbjct: 75  DLTGKKYDIEFELEKEGEKPQETPAAAPEHDNNNLNPRYTFDTFVIGDNNRMAHAASIAV 134

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKP- 110
              P+     + L G +G GK+ L +     I    S        ++   + +I++ +  
Sbjct: 135 AEAPAEAYNPLFLYGGAGLGKTHLMHSIAHYIIEHNSSLNVLYVTSEDFTNEVINSIQHK 194

Query: 111 --------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         +L++DI  +   +    + FH  N+++     +++++   P    V
Sbjct: 195 KQEELRSKYRNIDVLLVDDIQFVIGKESTQQEFFHTFNALYNSKKQIILSSDKPPKELDV 254

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR      V I  P+ +    ++ K      I+ID ++  YI   ++ ++   E
Sbjct: 255 LEERLRSRFSWGLPVDIQPPNYETKVAILRKRAELDNIYIDDEIFDYIATHIKSNIRDLE 314

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++K+   +      I   L+   L++ 
Sbjct: 315 GALNKIKVYSKLNKKPIDLELSKIALQDL 343


>gi|62182326|ref|YP_218743.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|71151802|sp|Q57I00|DNAA_SALCH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|62129959|gb|AAX67662.1| DNA replication initiator protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322716817|gb|EFZ08388.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 466

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%)

Query: 8   YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54
           ++   P +    QP+                 +  +     +  + D+ +   + + A  
Sbjct: 92  HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 151

Query: 55  LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98
                   P      + L G +G GK+ L +     I + K  +            ++ K
Sbjct: 152 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211

Query: 99  SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           +L +  I+       +   +L++DI      +    + FH  N++ + +  +++T+  +P
Sbjct: 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 271

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR      V I  P+ +    +++K   +  I +  ++A +I +R+  +
Sbjct: 272 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 331

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +   E  ++++   A   G  IT     E L++ 
Sbjct: 332 VRELEGALNRVIANANFTGRAITIDFVREALRDL 365


>gi|167036432|ref|YP_001664010.1| chromosomal replication initiation protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167038676|ref|YP_001661661.1| chromosomal replication initiation protein [Thermoanaerobacter sp.
           X514]
 gi|300913764|ref|ZP_07131081.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           sp. X561]
 gi|307723219|ref|YP_003902970.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           sp. X513]
 gi|320114858|ref|YP_004185017.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226735859|sp|B0KAG0|DNAA_THEP3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735860|sp|B0K0W8|DNAA_THEPX RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166852916|gb|ABY91325.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           sp. X514]
 gi|166855266|gb|ABY93674.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300890449|gb|EFK85594.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           sp. X561]
 gi|307580280|gb|ADN53679.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           sp. X513]
 gi|319927949|gb|ADV78634.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 443

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  +V ++ + A     +    P++    + + G  G GK+ L +         
Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKH 168

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           +S        +++  + L+++ K                +L++DI  +   +    + FH
Sbjct: 169 QSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKKAQT 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++ AY+ ++++ ++   E  + ++   +      I   LA   LKE
Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKANIDLELAKHALKE 341


>gi|114565577|ref|YP_752731.1| initiation of chromosome replication [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336512|gb|ABI67360.1| initiation of chromosome replication [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 436

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 85/237 (35%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIW------- 84
               + D  +V ++   A     +    P      + + G  G GK+ L           
Sbjct: 97  NPKYTFDTFVVGNSNRFAHAACYAVGESPFKSYNPLFIYGGVGLGKTHLMQAIGHHILSR 156

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S++  +   S+I     S+  +  + +   L++DI  L   +    + FH
Sbjct: 157 KPNYLVMYVSSEQFTNDMISSIKDDTTSLFRNKYRSIDVLLVDDIQFLAGKERTQEEFFH 216

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P +       L SR +   +  I  PD +    ++ K    
Sbjct: 217 TFNTLHESNKQVVISSDRPPRNIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAQG 276

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             + I   +  YI   ++ ++   E  + ++   A      +  + A E LK+    
Sbjct: 277 ENLNIPYSVLDYIANYIDSNIRELEGALIRLVAFATINNKPLDMNTAVEALKDIMPP 333


>gi|315659995|ref|ZP_07912853.1| DNA-directed DNA replication initiator protein [Staphylococcus
           lugdunensis M23590]
 gi|315494896|gb|EFU83233.1| DNA-directed DNA replication initiator protein [Staphylococcus
           lugdunensis M23590]
          Length = 467

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------------ 84
            D  ++         A   +   P+     + + G  G GK+ L +              
Sbjct: 136 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNNPNAK 195

Query: 85  -----SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSI 133
                S+K  +    +I    +    +  + +   L++DI  +   +    + FH  N +
Sbjct: 196 VLYTSSEKFTNEFIKSIRDGENEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 255

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 256 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKMEEENLE 314

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L AE LK+  Q
Sbjct: 315 IPMEALNYIANQIQSNIRELEGALTRLLAYSQLQGRPITTELTAEALKDIIQ 366


>gi|289551834|ref|YP_003472738.1| Chromosomal replication initiator protein DnaA [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181365|gb|ADC88610.1| Chromosomal replication initiator protein DnaA [Staphylococcus
           lugdunensis HKU09-01]
          Length = 455

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------------ 84
            D  ++         A   +   P+     + + G  G GK+ L +              
Sbjct: 124 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNNPNAK 183

Query: 85  -----SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSI 133
                S+K  +    +I    +    +  + +   L++DI  +   +    + FH  N +
Sbjct: 184 VLYTSSEKFTNEFIKSIRDGENEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 244 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKMEEENLE 302

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L AE LK+  Q
Sbjct: 303 IPMEALNYIANQIQSNIRELEGALTRLLAYSQLQGRPITTELTAEALKDIIQ 354


>gi|224585637|ref|YP_002639436.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224470165|gb|ACN47995.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 470

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 135 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 194

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 195 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 254

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 255 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 314

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 315 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 369


>gi|304414287|ref|ZP_07395655.1| chromosomal replication initiator protein and DNA-binding
           transcriptional dual regulator [Candidatus Regiella
           insecticola LSR1]
 gi|304283501|gb|EFL91897.1| chromosomal replication initiator protein and DNA-binding
           transcriptional dual regulator [Candidatus Regiella
           insecticola LSR1]
          Length = 466

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 93/231 (40%), Gaps = 26/231 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               S D+ +   + + A          P +    + L G +G GK+ L +     I ++
Sbjct: 132 NTKHSFDNFVEGKSNQLARAAARQVADNPGKAYNPLFLYGCTGLGKTHLLHAVGNGIIAN 191

Query: 87  KSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128
           KS++            ++ K+L +  I+       +   +L++DI      +    + FH
Sbjct: 192 KSKAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSLDALLIDDIQFFSNKERSQEEFFH 251

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   +
Sbjct: 252 TFNTLLEGNQQIILTSDRYPKEINGVADRLKSRFGWGLTVAIDPPELETRVAILMKKADE 311

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L
Sbjct: 312 NDIVLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREAL 362


>gi|149278100|ref|ZP_01884239.1| chromosomal replication initiator protein [Pedobacter sp. BAL39]
 gi|149231298|gb|EDM36678.1| chromosomal replication initiator protein [Pedobacter sp. BAL39]
          Length = 477

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 85/260 (32%), Gaps = 39/260 (15%)

Query: 10  FFVPD-KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS- 64
           F +P  K+ N  P     QL          + D  +       A      + + P   S 
Sbjct: 126 FVIPGLKKMNVDP-----QL------NANYTFDTFVEGDCNRLARSAGHAVSAKPGATSF 174

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD--------------------SIL 104
             +++ G SG GK+ LA    ++ R      +   L                        
Sbjct: 175 NPLMIYGASGLGKTHLAQAIGNEIRQNLPDKLVIYLSCEKFCQQFVESLKNNTINDFVNF 234

Query: 105 IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                 ++++DI      +      FHI N +HQ    +++T+   P         L SR
Sbjct: 235 YQAMDVIIMDDIHNFAGKEKTQDIFFHIFNHLHQSGKQIIITSDKSPKDLTGLEERLLSR 294

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K      + +P+ +    ++ K      I +  ++  Y+   ++ ++   E  +  +  
Sbjct: 295 FKWGLSADLQIPELETRIAILRKKMYADGIDLPDEVVEYVAHNIDNNVRELEGAMVSLLA 354

Query: 222 LALSRGMGITRSLAAEVLKE 241
            +      I   LA  +LK 
Sbjct: 355 QSTMNKKEIDLQLAKSMLKN 374


>gi|332996040|gb|EGK15667.1| chromosomal replication initiator protein DnaA [Shigella flexneri
           VA-6]
          Length = 444

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343


>gi|149912068|ref|ZP_01900659.1| chromosomal replication initiation protein [Moritella sp. PE36]
 gi|149804864|gb|EDM64901.1| chromosomal replication initiation protein [Moritella sp. PE36]
          Length = 460

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 94/248 (37%), Gaps = 28/248 (11%)

Query: 23  NKEEQLFFSF--PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77
           +  +Q   +      L  + ++ +   + + A        S P      + L G +G GK
Sbjct: 112 SSPQQPTINHRSNVNLTYTFENFVEGKSNQLARAAAQQVASNPGGAYNPLFLYGGTGLGK 171

Query: 78  SCLANIW-----SDKSRSTRF--------SNIAKSLDSILIDT-------RKPVLLEDID 117
           + L +       + K  +            ++ K+L +  I+           +L++DI 
Sbjct: 172 THLLHAVGNGIKAQKPNAKVIYMHSERFVQDMVKALQNNAIEAFKNYYRSVDALLIDDIQ 231

Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
                +    + FH  N++ + +  +++T+  +P         L SR      + I  P+
Sbjct: 232 FFAKKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPE 291

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    ++++   +  I +  ++A +I +R+  ++   E  ++++   A   G  I    
Sbjct: 292 LETRVAILMRKAVESNIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDF 351

Query: 235 AAEVLKET 242
             E L++ 
Sbjct: 352 VREALRDL 359


>gi|302341687|ref|YP_003806216.1| chromosomal replication initiator protein DnaA [Desulfarculus
           baarsii DSM 2075]
 gi|301638300|gb|ADK83622.1| chromosomal replication initiator protein DnaA [Desulfarculus
           baarsii DSM 2075]
          Length = 457

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 93/231 (40%), Gaps = 26/231 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-----WSD 86
             G + +  +V +  E A     +    P R    +++ G +G GK+ L +      +  
Sbjct: 118 KPGYTFETFIVGTCNELAHAACRAVAQQPGRQYNPLLIFGGAGLGKTHLLHAVGNAFYQR 177

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
             R+       ++  + LI   +                +LL+DI  L   +    +LFH
Sbjct: 178 DPRAKVLYTTCEAFTNELIQAVRFDSIGRFQEKYRGLDCLLLDDIQFLAGRERTQEELFH 237

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T+   P      +  L +R +      +  P  + +  ++      
Sbjct: 238 TFNALQESGGQIVLTSDDPPRELQGVVKRLRTRFEGGLTADLQPPPSEIMVAILQSKALA 297

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + + +  ++A ++ ++ E ++   E  ++++  ++  +G+ +T  LA  V+
Sbjct: 298 KGMDLSDQVAMFLARQPESNVRVLEGYLNRIIAVSRFQGVEVTLELARRVV 348


>gi|89074702|ref|ZP_01161160.1| chromosomal replication initiation protein [Photobacterium sp.
           SKA34]
 gi|89049466|gb|EAR55027.1| chromosomal replication initiation protein [Photobacterium sp.
           SKA34]
          Length = 466

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWS 85
                + ++ +   + +  +         P      + L G +G GK+ L +     I +
Sbjct: 131 VNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIAN 190

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 251 HTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 310

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 311 DHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365


>gi|299769105|ref|YP_003731131.1| DnaA regulatory inactivator Hda [Acinetobacter sp. DR1]
 gi|298699193|gb|ADI89758.1| DnaA regulatory inactivator Hda [Acinetobacter sp. DR1]
          Length = 232

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 21/228 (9%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D     +    V  +    +       + G +G+GKS L +   
Sbjct: 2   RQLQLDIEPQLDARISDF-SGPSWGNVVDAVRQLHAGLVSRFYIYGGAGTGKSHLLSAIC 60

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT-----------QLFHIINSI 133
           D       S I  SL  +L    + +  LE  DL+  +D             +FH++N  
Sbjct: 61  DSYLEVGKSAIKVSLLELLDAPIEAITSLEHYDLVALDDIESISGVPHWQKAVFHLMN-- 118

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190
             ++  L+ ++R  P+   + LPDL SRL  A  VK+  P          ++  + + R 
Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PSGSLYADRYSLVTSVMSRRG 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           I  D+++  Y++           + V +++ L       ++ +   ++
Sbjct: 176 IHFDQQIVDYLLLHGPHQASLLLQTVAQLEKLLKGEKTKLSNATLRQI 223


>gi|293609874|ref|ZP_06692176.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828326|gb|EFF86689.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123102|gb|ADY82625.1| chromosomal replication initiator protein DnaA [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 232

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 21/228 (9%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D          V  +    +       + G +G+GKS L +   
Sbjct: 2   RQLQLDIEPQLDARISDF-SGPGWGHVVDAVRQLHAGLVSRFYIYGGAGTGKSHLLSAIC 60

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT-----------QLFHIINSI 133
           D       S I  SL  +L    + +  LE  DL+  +D             +FH++N  
Sbjct: 61  DSYLEIGKSAIKVSLLELLDAPIEAITSLEHYDLVALDDIESISGVPHWQKAVFHLMN-- 118

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190
             ++  L+ ++R  P+   + LPDL SRL  A  VK+  P          ++  + A R 
Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PSGSLYADRYALVTSVMARRG 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           I  D+++  Y++           + V +++ L       ++ +   ++
Sbjct: 176 IHFDQQIVDYLLLHGPHQASLLLQTVAQLEKLLKGEKTKLSNATLRQI 223


>gi|260595830|ref|YP_003208401.1| Chromosomal replication initiator protein dnaA [Cronobacter
           turicensis z3032]
 gi|260215007|emb|CBA26668.1| Chromosomal replication initiator protein dnaA [Cronobacter
           turicensis z3032]
          Length = 486

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 151 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 210

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 211 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 270

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 271 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 330

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 331 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 385


>gi|16762487|ref|NP_458104.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143975|ref|NP_807317.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|197265269|ref|ZP_03165343.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|207859064|ref|YP_002245715.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213021809|ref|ZP_03336256.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213052696|ref|ZP_03345574.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213424952|ref|ZP_03357702.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581270|ref|ZP_03363096.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213648784|ref|ZP_03378837.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289826405|ref|ZP_06545517.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|21362471|sp|Q8Z2N6|DNAA_SALTI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735840|sp|B5QUQ0|DNAA_SALEP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|25299855|pir||AI0957 chromosomal replication initiator protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504792|emb|CAD03157.1| chromosomal replication initiator protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139611|gb|AAO71177.1| chromosomal replication initiator protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|197243524|gb|EDY26144.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|206710867|emb|CAR35231.1| chromosomal replication initiator protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 466

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%)

Query: 8   YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54
           ++   P +    QP+                 +  +     +  + D+ +   + + A  
Sbjct: 92  HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 151

Query: 55  LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98
                   P      + L G +G GK+ L +     I + K  +            ++ K
Sbjct: 152 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211

Query: 99  SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           +L +  I+       +   +L++DI      +    + FH  N++ + +  +++T+  +P
Sbjct: 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 271

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                    L SR      V I  P+ +    +++K   +  I +  ++A +I +R+  +
Sbjct: 272 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 331

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +   E  ++++   A   G  IT     E L++ 
Sbjct: 332 VRELEGALNRVIANANFTGRAITIDFVREALRDL 365


>gi|327395909|dbj|BAK13331.1| chromosomal replication initiator protein DnaA [Pantoea ananatis
           AJ13355]
          Length = 445

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 110 VNNRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 169

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 170 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 229

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 230 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 289

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 290 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 344


>gi|152972609|ref|YP_001337755.1| chromosomal replication initiation protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|262040466|ref|ZP_06013709.1| DNA replication initiator protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|150957458|gb|ABR79488.1| chromosomal replication initiation protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|259042219|gb|EEW43247.1| DNA replication initiator protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 444

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 168

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343


>gi|330752438|emb|CBL87388.1| chromosomal replication initiation protein [uncultured
           Flavobacteria bacterium]
          Length = 475

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 92/259 (35%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + ++ L   +   A     +  + P      
Sbjct: 125 FVIPGIRNV----KIESQL------NPIYTFENFLEGDSNRLARNAGIAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234

Query: 109 ---KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++D+  L          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QIIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++        + + + +  Y+ + ++ ++   E  +  +   
Sbjct: 295 KWGLSAELQKPDFETRVSIVKNKLYRDGVEMSEDVIEYVAKNIKTNVRELEGAIISLIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           +      IT  LA E++++
Sbjct: 355 SSFNKKEITLGLAKEIVEK 373


>gi|110644045|ref|YP_671775.1| chromosomal replication initiator protein DnaA [Escherichia coli
           536]
 gi|312972006|ref|ZP_07786180.1| chromosomal replication initiator protein DnaA [Escherichia coli
           1827-70]
 gi|110345637|gb|ABG71874.1| chromosomal replication initiator protein DnaA [Escherichia coli
           536]
 gi|310334383|gb|EFQ00588.1| chromosomal replication initiator protein DnaA [Escherichia coli
           1827-70]
 gi|315138286|dbj|BAJ45445.1| chromosomal replication initiator protein DnaA [Escherichia coli
           DH1]
 gi|315618592|gb|EFU99178.1| chromosomal replication initiator protein DnaA [Escherichia coli
           3431]
 gi|323161046|gb|EFZ46965.1| chromosomal replication initiator protein DnaA [Escherichia coli
           E128010]
 gi|323173320|gb|EFZ58949.1| chromosomal replication initiator protein DnaA [Escherichia coli
           LT-68]
 gi|323182497|gb|EFZ67901.1| chromosomal replication initiator protein DnaA [Escherichia coli
           1357]
 gi|323189563|gb|EFZ74843.1| chromosomal replication initiator protein DnaA [Escherichia coli
           RN587/1]
          Length = 444

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343


>gi|323155378|gb|EFZ41561.1| chromosomal replication initiator protein DnaA [Escherichia coli
           EPECa14]
          Length = 444

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343


>gi|323496927|ref|ZP_08101955.1| chromosomal replication initiation protein [Vibrio sinaloensis DSM
           21326]
 gi|323318001|gb|EGA70984.1| chromosomal replication initiation protein [Vibrio sinaloensis DSM
           21326]
          Length = 468

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGSAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|205354575|ref|YP_002228376.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|226735841|sp|B5RFY7|DNAA_SALG2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|205274356|emb|CAR39381.1| chromosomal replication initiator protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629711|gb|EGE36054.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 466

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 131 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 190

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 251 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 310

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 311 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365


>gi|197334133|ref|YP_002154781.1| chromosomal replication initiator protein DnaA [Vibrio fischeri
           MJ11]
 gi|197315623|gb|ACH65070.1| chromosomal replication initiator protein DnaA [Vibrio fischeri
           MJ11]
          Length = 446

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 87/242 (35%), Gaps = 30/242 (12%)

Query: 31  SFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI 83
                          + +   + +  +         P      + L G +G GK+ L + 
Sbjct: 104 DLNHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHA 163

Query: 84  WSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND 123
             +                     ++ K+L +  I+       +   +L++DI      +
Sbjct: 164 VGNAIVDSKPDARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 223

Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + FH  N++ + +  +++T+  +P         L SR      V I  P+ +    
Sbjct: 224 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 283

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +++K   D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L+
Sbjct: 284 ILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALR 343

Query: 241 ET 242
           + 
Sbjct: 344 DL 345


>gi|158319060|ref|YP_001511567.1| chromosomal replication initiation protein [Alkaliphilus oremlandii
           OhILAs]
 gi|167016896|sp|A8MEA0|DNAA_ALKOO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|158139259|gb|ABW17571.1| chromosomal replication initiator protein DnaA [Alkaliphilus
           oremlandii OhILAs]
          Length = 451

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 93/234 (39%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ ++   A      +   P+     + L G  G GK+ L +     I  +
Sbjct: 116 NPKYTFDTFVIGNSNRFAHAASLAVAESPAKAYNPLFLYGGVGLGKTHLMHAIGHFILQN 175

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFH 128
             ++      +++  + LI++ +                +L++DI  +   +    + FH
Sbjct: 176 NPKAKVVYVSSETFTNELINSIRHDRNVEFRNRFRTIDVLLVDDIQFIAGKESTQEEFFH 235

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 236 TFNALHESNKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILYKKAQM 295

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I +  ++  +I ++++ ++   E  + ++   +      IT  LA+E LKE 
Sbjct: 296 ENIDVPNEVLTHIAKKIQSNIRELEGALIRIVAYSSLTNSEITVELASEALKEL 349


>gi|290550|gb|AAA62053.1| dnaA (CG Site No. 851) [Escherichia coli]
          Length = 471

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 195

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N + + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 256 HTFNXLLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370


>gi|332750523|gb|EGJ80932.1| chromosomal replication initiator protein DnaA [Shigella flexneri
           K-671]
 gi|332764073|gb|EGJ94310.1| chromosomal replication initiator protein DnaA [Shigella flexneri
           2930-71]
          Length = 444

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAACQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343


>gi|329297781|ref|ZP_08255117.1| chromosomal replication initiation protein [Plautia stali symbiont]
          Length = 467

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 26/229 (11%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS- 90
            D+ +   + + A          PS     + L G +G GK+ L +     I + K  + 
Sbjct: 138 FDNFVEGKSNQLARAAARQVADNPSGAYNPLFLYGGTGLGKTHLLHAVGNGIIARKPNAK 197

Query: 91  -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133
                      ++ K+L +  I+       +   +L++DI      +    + FH  N++
Sbjct: 198 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 257

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            + +  +++T+  +P         L SR      V I  P+ +    +++K   +  I +
Sbjct: 258 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRL 317

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 318 PGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|198245954|ref|YP_002217788.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|226735839|sp|B5FN10|DNAA_SALDC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|197940470|gb|ACH77803.1| chromosomal replication initiator protein DnaA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
          Length = 466

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 131 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 190

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 251 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 310

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 311 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365


>gi|161505631|ref|YP_001572743.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866978|gb|ABX23601.1| hypothetical protein SARI_03807 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 469

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 134 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 193

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 194 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 253

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 254 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 313

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 314 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 368


>gi|312142409|ref|YP_003993855.1| chromosomal replication initiator protein DnaA [Halanaerobium sp.
           'sapolanicus']
 gi|311903060|gb|ADQ13501.1| chromosomal replication initiator protein DnaA [Halanaerobium sp.
           'sapolanicus']
          Length = 473

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 26/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------ 85
               + D  +V ++   A     +    P++    + + G  G GK+ L    +      
Sbjct: 135 NPKYTFDTFVVGNSNRFAHAASLAVAEAPAKAYNPLFIYGDVGLGKTHLMQAIAHFILKN 194

Query: 86  -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                      +   +   ++I         D  + +   L++DI  L   +    + FH
Sbjct: 195 NPDYKVVYVSSETFTNELINSIKDDSTVDFRDKYRNIDILLVDDIQFLAGKERTQEEFFH 254

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  L++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 255 TFNTLHESNRQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKPDLETRIAILRKKADI 314

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             + I  ++  YI  +++ ++   E  + K+   +      I   LA E LK+   
Sbjct: 315 ENLTIPNEVVIYIANKIQSNIRELEGALVKVIAYSSLVDREIDIELAREALKDLVN 370


>gi|188535562|ref|YP_001909359.1| Chromosomal replication initiator protein [Erwinia tasmaniensis
           Et1/99]
 gi|226735811|sp|B2VCE3|DNAA_ERWT9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|188030604|emb|CAO98499.1| Chromosomal replication initiator protein [Erwinia tasmaniensis
           Et1/99]
          Length = 463

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 96/263 (36%), Gaps = 33/263 (12%)

Query: 13  PDKQKNDQPKNKE-------EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65
           P       P            +L +        + D+ +   + + A          P  
Sbjct: 100 PGVVSRPAPTRPSWDNVPALAELSYRSNVNTKHNFDNFVEGKSNQLARAAARQVADNPGG 159

Query: 66  V---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID--- 106
               + L G +G GK+ L +     I + K  +            ++ K+L +  I+   
Sbjct: 160 AYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFK 219

Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
               +   +L++DI      +    + FH  N++ + +  +++T+  +P         L 
Sbjct: 220 RYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLK 279

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SR      V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++
Sbjct: 280 SRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRV 339

Query: 220 DNLALSRGMGITRSLAAEVLKET 242
              A   G  IT     E L++ 
Sbjct: 340 IANANFTGRAITIDFVREALRDL 362


>gi|296271546|ref|YP_003654177.1| chromosomal replication initiator protein DnaA [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095721|gb|ADG91671.1| chromosomal replication initiator protein DnaA [Arcobacter
           nitrofigilis DSM 7299]
          Length = 437

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS----DK 87
               + D  +V S+ + A      +   P      + + G +G GK+ L         + 
Sbjct: 103 NPSYTFDSFVVGSSNQMAFNASLAVSKKPGIQYNPLFIYGGTGLGKTHLLQAIGNDAIEH 162

Query: 88  SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHII 130
            R+  +  I + ++      +                +L++DI  L   +    + FH  
Sbjct: 163 GRTIIYVTIEQFMNDFTFAIKNKNMEHFRSKYRKCDVLLIDDIQFLSGKEQTQEEFFHTF 222

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +H  +  ++MT+   P      +  L SR +      + +P  +    +I K      
Sbjct: 223 NELHNAEKQIVMTSDRLPSQIAGLVDRLKSRFEWGLTADVQIPGLETKIAIIEKKSELNG 282

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I +++++  YI   ++ S+   E ++ +++  A      I   +   +LKE 
Sbjct: 283 IHLEREIVNYIATNLDNSIREIEGVLIRINASAALLNQEINLPMVQNLLKEQ 334


>gi|78221229|ref|YP_382976.1| chromosomal replication initiation protein [Geobacter
           metallireducens GS-15]
 gi|123742956|sp|Q39ZS3|DNAA_GEOMG RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78192484|gb|ABB30251.1| chromosomal replication initiator protein, DnaA [Geobacter
           metallireducens GS-15]
          Length = 450

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 90/238 (37%), Gaps = 26/238 (10%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD 86
           FS       + D  +   + + A     S  + P+     + + G  G GK+ L     +
Sbjct: 111 FSTNLNAKYTFDTFVCGGSNQFAHAAALSVANNPAGKYNPLFIYGGVGLGKTHLLTAIGN 170

Query: 87  KS-----RSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND--- 123
           +      ++      ++   + LI+                   +L++DI  +   +   
Sbjct: 171 QVLTKNRKARVCFYTSEKFMNELINCLRYQKMEQFRNKFRKMDLLLIDDIQFIAGKERTQ 230

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++++    +++T+  FP         L SR +   +  I  PD +    ++ 
Sbjct: 231 EEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPDTETKVAILS 290

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           K      I +   +A ++      ++   E ++ ++  +A   G  IT  +A EVLK+
Sbjct: 291 KKADSDGIRLPDDVALFLASSASTNVRELEGMLIRLGAVASLTGKNITLDMAREVLKD 348


>gi|158834349|gb|ABW81974.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
          Length = 306

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 93/229 (40%), Gaps = 26/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90
            D  +   + + A      +   P      + L G +G GK+ L +     I + K+++ 
Sbjct: 51  FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 110

Query: 91  -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133
                      ++ K+L +  I+       +   +L++DI      +    + FH  N++
Sbjct: 111 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 170

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            + +  +++T+  +P         L SR      V I+ P+ +    +++K   +  I +
Sbjct: 171 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 230

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++A +I +R+  ++   E  ++++   A   G  IT     + L++ 
Sbjct: 231 PGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 279


>gi|167748043|ref|ZP_02420170.1| hypothetical protein ANACAC_02781 [Anaerostipes caccae DSM 14662]
 gi|317472418|ref|ZP_07931743.1| chromosomal replication initiator protein DnaA [Anaerostipes sp.
           3_2_56FAA]
 gi|167652523|gb|EDR96652.1| hypothetical protein ANACAC_02781 [Anaerostipes caccae DSM 14662]
 gi|316900138|gb|EFV22127.1| chromosomal replication initiator protein DnaA [Anaerostipes sp.
           3_2_56FAA]
          Length = 447

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 96/265 (36%), Gaps = 27/265 (10%)

Query: 9   SFFVPDKQKNDQPKNKEE-QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---S 64
           SF + + +K   P ++ + QL  S       + D  +V +  + A     +    P    
Sbjct: 84  SFVLEEAKKKKAPASRTDTQLQDSNNLNPRYTFDSFVVGTNNQMAHAACIAVAEAPAEAY 143

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPV----------- 111
             + L G +G GK+ L +  +      +++   +  + +    +    +           
Sbjct: 144 NPLFLYGGAGLGKTHLMHSIAHYIMENNSKLKVLYVTSEDFTNEVINAIHHNKQEELRNK 203

Query: 112 -------LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                  L++DI  +   D    + FH  N+++   S +++++   P         L +R
Sbjct: 204 YRTIDVLLIDDIQFIIGKDSTQQEFFHTFNALYNSKSQIIISSDKPPKEIETLEERLRTR 263

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                   I  PD +    ++ K      I+ID  +  YI   ++ ++   E  ++K+  
Sbjct: 264 FGCGLTADIQPPDYETRIAILRKRAELDHIYIDDAIFDYIASNIKSNIRELEGALNKIRV 323

Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246
            +      I   LA   LK+    D
Sbjct: 324 YSKLEKRPIDLDLAKIALKDLVDND 348


>gi|312882235|ref|ZP_07741981.1| chromosomal replication initiation protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309370079|gb|EFP97585.1| chromosomal replication initiation protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 468

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +  +         P      + L G +G GK+ L +   +    
Sbjct: 133 VNPKHMFNNFVEGKSNQLGLAAAKQVSDNPGSAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|300940887|ref|ZP_07155414.1| replication initiator protein DnaA [Escherichia coli MS 21-1]
 gi|300454368|gb|EFK17861.1| replication initiator protein DnaA [Escherichia coli MS 21-1]
          Length = 471

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 195

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370


>gi|157144344|ref|YP_001451663.1| hypothetical protein CKO_00048 [Citrobacter koseri ATCC BAA-895]
 gi|157081549|gb|ABV11227.1| hypothetical protein CKO_00048 [Citrobacter koseri ATCC BAA-895]
          Length = 444

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343


>gi|269103820|ref|ZP_06156517.1| chromosomal replication initiator protein dnaA [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163718|gb|EEZ42214.1| chromosomal replication initiator protein dnaA [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 474

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI----WSD 86
                + ++ +   + +  +         P      + L G +G GK+ L +      +D
Sbjct: 139 VNPKHNFNNFVEGKSNQLGLAACRQVADNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIAD 198

Query: 87  K---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
           +                ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 199 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 258

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 259 HTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 318

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 319 DHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 373


>gi|291615643|ref|YP_003518385.1| DnaA [Pantoea ananatis LMG 20103]
 gi|291150673|gb|ADD75257.1| DnaA [Pantoea ananatis LMG 20103]
          Length = 472

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 137 VNNRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 196

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 197 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 256

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 257 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 316

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 317 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 371


>gi|158834311|gb|ABW81955.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834313|gb|ABW81956.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834315|gb|ABW81957.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834317|gb|ABW81958.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834321|gb|ABW81960.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834323|gb|ABW81961.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
          Length = 306

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 93/229 (40%), Gaps = 26/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90
            D  +   + + A      +   P      + L G +G GK+ L +     I + K+++ 
Sbjct: 51  FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 110

Query: 91  -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133
                      ++ K+L +  I+       +   +L++DI      +    + FH  N++
Sbjct: 111 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 170

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            + +  +++T+  +P         L SR      V I+ P+ +    +++K   +  I +
Sbjct: 171 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 230

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++A +I +R+  ++   E  ++++   A   G  IT     + L++ 
Sbjct: 231 PGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 279


>gi|156936082|ref|YP_001439998.1| hypothetical protein ESA_03976 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534336|gb|ABU79162.1| hypothetical protein ESA_03976 [Cronobacter sakazakii ATCC BAA-894]
          Length = 438

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 103 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 162

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 163 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 222

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 223 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 282

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 283 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 337


>gi|310765874|gb|ADP10824.1| Chromosomal replication initiator protein [Erwinia sp. Ejp617]
          Length = 463

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 96/263 (36%), Gaps = 33/263 (12%)

Query: 13  PDKQKNDQPKNKE-------EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65
           P       P            +L +        + D+ +   + + A          P  
Sbjct: 100 PGVISRPAPMRPSWDNVPALAELSYRSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGG 159

Query: 66  V---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID--- 106
               + L G +G GK+ L +     I + K  +            ++ K+L +  I+   
Sbjct: 160 AYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFK 219

Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
               +   +L++DI      +    + FH  N++ + +  +++T+  +P         L 
Sbjct: 220 RYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLK 279

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SR      V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++
Sbjct: 280 SRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRV 339

Query: 220 DNLALSRGMGITRSLAAEVLKET 242
              A   G  IT     E L++ 
Sbjct: 340 IANANFTGRAITIDFVREALRDL 362


>gi|90413732|ref|ZP_01221720.1| chromosomal replication initiation protein [Photobacterium
           profundum 3TCK]
 gi|90325201|gb|EAS41698.1| chromosomal replication initiation protein [Photobacterium
           profundum 3TCK]
          Length = 474

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI----WSD 86
                + ++ +   + +  +         P      + L G +G GK+ L +      +D
Sbjct: 139 VNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIAD 198

Query: 87  K---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
           +                ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 199 RKPNARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 258

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 259 HTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 318

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 319 NHNIRLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 373


>gi|320666234|gb|EFX33240.1| chromosomal replication initiation protein [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 467

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEERLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|290511689|ref|ZP_06551057.1| chromosomal replication initiator protein DnaA [Klebsiella sp.
           1_1_55]
 gi|289775479|gb|EFD83479.1| chromosomal replication initiator protein DnaA [Klebsiella sp.
           1_1_55]
          Length = 471

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 195

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370


>gi|206580988|ref|YP_002235886.1| chromosomal replication initiator protein DnaA [Klebsiella
           pneumoniae 342]
 gi|288932893|ref|YP_003436952.1| chromosomal replication initiator protein DnaA [Klebsiella
           variicola At-22]
 gi|226735819|sp|B5XT51|DNAA_KLEP3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|206570046|gb|ACI11822.1| chromosomal replication initiator protein DnaA [Klebsiella
           pneumoniae 342]
 gi|288887622|gb|ADC55940.1| chromosomal replication initiator protein DnaA [Klebsiella
           variicola At-22]
          Length = 467

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|314935201|ref|ZP_07842554.1| ATPase involved in DNA replication initiation [Staphylococcus
           hominis subsp. hominis C80]
 gi|313656536|gb|EFS20275.1| ATPase involved in DNA replication initiation [Staphylococcus
           hominis subsp. hominis C80]
          Length = 450

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 28/232 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S+K  + 
Sbjct: 119 FDTFVIGPGNRFPHAASLAVAEAPAQAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 178

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 179 VLYTSSEKFTNDFIKSIRNNEPEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 238

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ    +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 239 HQNKKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLE 297

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           I  +   YI  +++ ++   E  + ++   +  +G  IT  LAAE LK+  Q
Sbjct: 298 IPAEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDIIQ 349


>gi|228474142|ref|ZP_04058879.1| chromosomal replication initiator protein DnaA [Staphylococcus
           hominis SK119]
 gi|228271837|gb|EEK13174.1| chromosomal replication initiator protein DnaA [Staphylococcus
           hominis SK119]
          Length = 450

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 28/232 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D  ++         A   +   P+     + + G  G GK+ L +       S+K  + 
Sbjct: 119 FDTFVIGPGNRFPHAASLAVAEAPAQAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 178

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 179 VLYTSSEKFTNDFIKSIRNNEPEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 238

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ    +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 239 HQNKKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLE 297

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           I  +   YI  +++ ++   E  + ++   +  +G  IT  LAAE LK+  Q
Sbjct: 298 IPAEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDIIQ 349


>gi|59710616|ref|YP_203392.1| chromosomal replication initiation protein [Vibrio fischeri ES114]
 gi|71151809|sp|Q5E8Z2|DNAA_VIBF1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|59478717|gb|AAW84504.1| chromosomal replication initiator protein DnaA [Vibrio fischeri
           ES114]
          Length = 469

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 87/242 (35%), Gaps = 30/242 (12%)

Query: 31  SFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI 83
                          + +   + +  +         P      + L G +G GK+ L + 
Sbjct: 127 DLNHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHA 186

Query: 84  WSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND 123
             +                     ++ K+L +  I+       +   +L++DI      +
Sbjct: 187 VGNAIVDSKPDARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 246

Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + FH  N++ + +  +++T+  +P         L SR      V I  P+ +    
Sbjct: 247 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 306

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +++K   D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L+
Sbjct: 307 ILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALR 366

Query: 241 ET 242
           + 
Sbjct: 367 DL 368


>gi|15804296|ref|NP_290335.1| chromosomal replication initiation protein [Escherichia coli
           O157:H7 EDL933]
 gi|15833891|ref|NP_312664.1| chromosomal replication initiation protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|168748582|ref|ZP_02773604.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4113]
 gi|168753591|ref|ZP_02778598.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4401]
 gi|168759888|ref|ZP_02784895.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4501]
 gi|168772263|ref|ZP_02797270.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4196]
 gi|168779924|ref|ZP_02804931.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786532|ref|ZP_02811539.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC869]
 gi|168798737|ref|ZP_02823744.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC508]
 gi|195936323|ref|ZP_03081705.1| chromosomal replication initiation protein [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807676|ref|ZP_03250013.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208811867|ref|ZP_03253196.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819691|ref|ZP_03260011.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209395729|ref|YP_002273228.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325750|ref|ZP_03441834.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795705|ref|YP_003080542.1| chromosomal replication initiation protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|261225855|ref|ZP_05940136.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261258900|ref|ZP_05951433.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285121|ref|YP_003501939.1| Chromosomal replication initiator protein dnaA [Escherichia coli
           O55:H7 str. CB9615]
 gi|21362461|sp|Q8XBZ3|DNAA_ECO57 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735804|sp|B5YXA4|DNAA_ECO5E RecName: Full=Chromosomal replication initiator protein DnaA
 gi|12518541|gb|AAG58899.1|AE005601_5 DNA biosynthesis; initiation of chromosome replication; can be
           transcription regulator [Escherichia coli O157:H7 str.
           EDL933]
 gi|13364112|dbj|BAB38060.1| replication initiation protein DnaA [Escherichia coli O157:H7 str.
           Sakai]
 gi|187771794|gb|EDU35638.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016856|gb|EDU54978.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002469|gb|EDU71455.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358966|gb|EDU77385.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4401]
 gi|189369914|gb|EDU88330.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373439|gb|EDU91855.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC869]
 gi|189378776|gb|EDU97192.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC508]
 gi|208727477|gb|EDZ77078.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733144|gb|EDZ81831.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739814|gb|EDZ87496.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157129|gb|ACI34562.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209754108|gb|ACI75361.1| 50S ribosomal subunit protein L34 [Escherichia coli]
 gi|209754110|gb|ACI75362.1| 50S ribosomal subunit protein L34 [Escherichia coli]
 gi|209754112|gb|ACI75363.1| 50S ribosomal subunit protein L34 [Escherichia coli]
 gi|209754114|gb|ACI75364.1| 50S ribosomal subunit protein L34 [Escherichia coli]
 gi|209754116|gb|ACI75365.1| 50S ribosomal subunit protein L34 [Escherichia coli]
 gi|217321971|gb|EEC30395.1| chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595105|gb|ACT74466.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli O157:H7
           str. TW14359]
 gi|290764994|gb|ADD58955.1| Chromosomal replication initiator protein dnaA [Escherichia coli
           O55:H7 str. CB9615]
 gi|320191198|gb|EFW65848.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. EC1212]
 gi|320639427|gb|EFX09042.1| chromosomal replication initiation protein [Escherichia coli
           O157:H7 str. G5101]
 gi|320644870|gb|EFX13906.1| chromosomal replication initiation protein [Escherichia coli
           O157:H- str. 493-89]
 gi|320650134|gb|EFX18630.1| chromosomal replication initiation protein [Escherichia coli
           O157:H- str. H 2687]
 gi|320655482|gb|EFX23417.1| chromosomal replication initiation protein [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661108|gb|EFX28544.1| chromosomal replication initiation protein [Escherichia coli O55:H7
           str. USDA 5905]
 gi|326337249|gb|EGD61084.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. 1044]
 gi|326341620|gb|EGD65409.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           O157:H7 str. 1125]
          Length = 467

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|323493781|ref|ZP_08098899.1| chromosomal replication initiation protein [Vibrio brasiliensis LMG
           20546]
 gi|323311915|gb|EGA65061.1| chromosomal replication initiation protein [Vibrio brasiliensis LMG
           20546]
          Length = 468

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 89/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                   + +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 133 VNPKHKFTNFVEGKSNQLGLAAARQVSDNPGSAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|292490136|ref|YP_003533031.1| chromosomal replication initiator protein dnaA [Erwinia amylovora
           CFBP1430]
 gi|292901140|ref|YP_003540509.1| chromosomal replication initiator protein [Erwinia amylovora ATCC
           49946]
 gi|291200988|emb|CBJ48127.1| chromosomal replication initiator protein [Erwinia amylovora ATCC
           49946]
 gi|291555578|emb|CBA24173.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora
           CFBP1430]
 gi|312174329|emb|CBX82582.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora
           ATCC BAA-2158]
          Length = 463

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 96/263 (36%), Gaps = 33/263 (12%)

Query: 13  PDKQKNDQPKNKE-------EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65
           P       P            +L +        + D+ +   + + A          P  
Sbjct: 100 PGVVSRPAPTRPSWDNAPALAELSYRSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGG 159

Query: 66  V---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID--- 106
               + L G +G GK+ L +     I + K  +            ++ K+L +  I+   
Sbjct: 160 AYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFK 219

Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
               +   +L++DI      +    + FH  N++ + +  +++T+  +P         L 
Sbjct: 220 RYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLK 279

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SR      V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++
Sbjct: 280 SRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRV 339

Query: 220 DNLALSRGMGITRSLAAEVLKET 242
              A   G  IT     E L++ 
Sbjct: 340 IANANFTGRAITIDFVREALRDL 362


>gi|291086463|ref|ZP_06355876.2| hypothetical protein CIT292_10556 [Citrobacter youngae ATCC 29220]
 gi|291068324|gb|EFE06433.1| DNA replication initiator protein [Citrobacter youngae ATCC 29220]
          Length = 471

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 195

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370


>gi|309388282|gb|ADO76162.1| chromosomal replication initiator protein DnaA [Halanaerobium
           praevalens DSM 2228]
          Length = 466

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 26/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------ 85
               + D  +V ++   A     +    P++    + + G  G GK+ L    +      
Sbjct: 128 NPKYTFDTFVVGNSNRFAHAASLAVAEAPAKAYNPLFIYGDVGLGKTHLMQAIAHFILKN 187

Query: 86  -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                      +   +   ++I         D  + +   L++DI  L   +    + FH
Sbjct: 188 NPDYKVVYVSSETFTNELINSIKDDSTVDFRDKYRNIDILLVDDIQFLAGKERTQEEFFH 247

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  L++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 248 TFNTLHESNRQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKPDLETRIAILRKKADI 307

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             + I  ++  YI  +++ ++   E  + K+   +      I   LA E LK+   
Sbjct: 308 ENLTIPNEVVIYIANKIQSNIRELEGALVKVIAYSSLVDREIDVDLAREALKDLVN 363


>gi|238897212|ref|YP_002921960.1| chromosomal replication initiation protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238549542|dbj|BAH65893.1| chromosomal replication initiation protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 467

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|330005213|ref|ZP_08305172.1| replication initiator protein DnaA [Klebsiella sp. MS 92-3]
 gi|328536345|gb|EGF62707.1| replication initiator protein DnaA [Klebsiella sp. MS 92-3]
          Length = 471

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 195

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370


>gi|227539247|ref|ZP_03969296.1| DNA-directed DNA replication initiator protein [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300770720|ref|ZP_07080599.1| DNA-directed DNA replication initiator protein [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227240929|gb|EEI90944.1| DNA-directed DNA replication initiator protein [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300763196|gb|EFK60013.1| DNA-directed DNA replication initiator protein [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 475

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 88/260 (33%), Gaps = 39/260 (15%)

Query: 10  FFVPDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPS 64
           F +P  +K    P     QL          + D+ +       A      + +       
Sbjct: 124 FVIPGLKKLQVDP-----QL------NQHYTFDNFIEGECNRLARSAGFAVANKPGGTSF 172

Query: 65  RVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107
             ++L G  G GK+ L+                     +K       ++  +  +  ++ 
Sbjct: 173 NPLMLYGDVGLGKTHLSQAIGNEIKRNLPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNF 232

Query: 108 RKP---VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            +    ++++D+      +      FHI N +HQ    +++T+   P         L SR
Sbjct: 233 YQAMDVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQIILTSDKAPKDLAGLEERLLSR 292

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K      I +PD +    ++ K      I + + +  Y+  +++ S+   E  +  +  
Sbjct: 293 FKWGLSADIQVPDLETRMAILKKKMYSDGIELPENVVEYVAHQIDNSVRELEGAMVSLLA 352

Query: 222 LALSRGMGITRSLAAEVLKE 241
            +      I  +LA  +LK 
Sbjct: 353 QSTLNKKEIDLNLAKSMLKN 372


>gi|16131570|ref|NP_418157.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|74314016|ref|YP_312435.1| chromosomal replication initiation protein [Shigella sonnei Ss046]
 gi|89110311|ref|AP_004091.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli str.
           K-12 substr. W3110]
 gi|91213224|ref|YP_543210.1| chromosomal replication initiation protein [Escherichia coli UTI89]
 gi|157155055|ref|YP_001465187.1| chromosomal replication initiation protein [Escherichia coli
           E24377A]
 gi|157163182|ref|YP_001460500.1| chromosomal replication initiation protein [Escherichia coli HS]
 gi|170679718|ref|YP_001746030.1| chromosomal replication initiation protein [Escherichia coli
           SMS-3-5]
 gi|188495189|ref|ZP_03002459.1| chromosomal replication initiator protein DnaA [Escherichia coli
           53638]
 gi|191165774|ref|ZP_03027612.1| chromosomal replication initiator protein DnaA [Escherichia coli
           B7A]
 gi|191170447|ref|ZP_03032000.1| chromosomal replication initiator protein DnaA [Escherichia coli
           F11]
 gi|193063799|ref|ZP_03044886.1| chromosomal replication initiator protein DnaA [Escherichia coli
           E22]
 gi|193069150|ref|ZP_03050107.1| chromosomal replication initiator protein DnaA [Escherichia coli
           E110019]
 gi|194428054|ref|ZP_03060598.1| chromosomal replication initiator protein DnaA [Escherichia coli
           B171]
 gi|194431303|ref|ZP_03063596.1| chromosomal replication initiator protein DnaA [Shigella
           dysenteriae 1012]
 gi|194435690|ref|ZP_03067793.1| chromosomal replication initiator protein DnaA [Escherichia coli
           101-1]
 gi|209921179|ref|YP_002295263.1| chromosomal replication initiation protein [Escherichia coli SE11]
 gi|215489042|ref|YP_002331473.1| chromosomal replication initiation protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218556267|ref|YP_002389181.1| chromosomal replication initiation protein [Escherichia coli IAI1]
 gi|218560777|ref|YP_002393690.1| chromosomal replication initiation protein [Escherichia coli S88]
 gi|218691990|ref|YP_002400202.1| chromosomal replication initiation protein [Escherichia coli ED1a]
 gi|218697424|ref|YP_002405091.1| chromosomal replication initiation protein [Escherichia coli 55989]
 gi|218702551|ref|YP_002410180.1| chromosomal replication initiation protein [Escherichia coli IAI39]
 gi|218707348|ref|YP_002414867.1| chromosomal replication initiation protein [Escherichia coli
           UMN026]
 gi|237703502|ref|ZP_04533983.1| chromosomal replication initiation protein [Escherichia sp.
           3_2_53FAA]
 gi|238902792|ref|YP_002928588.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli BW2952]
 gi|253771436|ref|YP_003034267.1| chromosomal replication initiation protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038919|ref|ZP_04872971.1| chromosomal replication initiation protein [Escherichia sp. 1_1_43]
 gi|254163653|ref|YP_003046761.1| chromosomal replication initiation protein [Escherichia coli B str.
           REL606]
 gi|256021280|ref|ZP_05435145.1| chromosomal replication initiation protein [Shigella sp. D9]
 gi|256025567|ref|ZP_05439432.1| chromosomal replication initiation protein [Escherichia sp.
           4_1_40B]
 gi|260846513|ref|YP_003224291.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli O103:H2
           str. 12009]
 gi|293407342|ref|ZP_06651264.1| dnaA [Escherichia coli FVEC1412]
 gi|293417175|ref|ZP_06659802.1| chromosomal replication initiator protein DnaA [Escherichia coli
           B185]
 gi|293464026|ref|ZP_06664440.1| chromosomal replication initiator protein DnaA [Escherichia coli
           B088]
 gi|298383083|ref|ZP_06992678.1| chromosomal replication initiator protein dnaA [Escherichia coli
           FVEC1302]
 gi|301028495|ref|ZP_07191735.1| replication initiator protein DnaA [Escherichia coli MS 196-1]
 gi|306815945|ref|ZP_07450083.1| chromosomal replication initiation protein [Escherichia coli NC101]
 gi|307140402|ref|ZP_07499758.1| chromosomal replication initiation protein [Escherichia coli H736]
 gi|307313229|ref|ZP_07592854.1| chromosomal replication initiator protein DnaA [Escherichia coli W]
 gi|312967888|ref|ZP_07782100.1| chromosomal replication initiator protein DnaA [Escherichia coli
           2362-75]
 gi|331660044|ref|ZP_08360982.1| replication initiation protein DnaA [Escherichia coli TA206]
 gi|331665352|ref|ZP_08366253.1| replication initiation protein DnaA [Escherichia coli TA143]
 gi|331670546|ref|ZP_08371385.1| replication initiation protein DnaA [Escherichia coli TA271]
 gi|331685426|ref|ZP_08386012.1| replication initiation protein DnaA [Escherichia coli H299]
 gi|332282511|ref|ZP_08394924.1| chromosomal replication initiation protein [Shigella sp. D9]
 gi|399394|sp|P03004|DNAA_ECOLI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123387748|sp|Q1R4N5|DNAA_ECOUT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123745913|sp|Q3YWB2|DNAA_SHISS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|167016899|sp|A7ZTQ8|DNAA_ECO24 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|167016900|sp|A8A6G3|DNAA_ECOHS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735803|sp|B7MGC3|DNAA_ECO45 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735805|sp|B7NR04|DNAA_ECO7I RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735806|sp|B7M553|DNAA_ECO8A RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735807|sp|B7NF19|DNAA_ECOLU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735808|sp|B6I3T5|DNAA_ECOSE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735809|sp|B1LL27|DNAA_ECOSM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777900|sp|B7UMG9|DNAA_ECO27 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777901|sp|B7L846|DNAA_ECO55 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777902|sp|B7N2E7|DNAA_ECO81 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|259645248|sp|C4ZYX9|DNAA_ECOBW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|145760|gb|AAB59149.1| DnaA protein (gtg start codon) [Escherichia coli]
 gi|2367267|gb|AAC76725.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|73857493|gb|AAZ90200.1| DnaA [Shigella sonnei Ss046]
 gi|85676342|dbj|BAE77592.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli str.
           K12 substr. W3110]
 gi|91074798|gb|ABE09679.1| chromosomal replication initiator protein DnaA [Escherichia coli
           UTI89]
 gi|157068862|gb|ABV08117.1| chromosomal replication initiator protein DnaA [Escherichia coli
           HS]
 gi|157077085|gb|ABV16793.1| chromosomal replication initiator protein DnaA [Escherichia coli
           E24377A]
 gi|170517436|gb|ACB15614.1| chromosomal replication initiator protein DnaA [Escherichia coli
           SMS-3-5]
 gi|188490388|gb|EDU65491.1| chromosomal replication initiator protein DnaA [Escherichia coli
           53638]
 gi|190904098|gb|EDV63809.1| chromosomal replication initiator protein DnaA [Escherichia coli
           B7A]
 gi|190909255|gb|EDV68841.1| chromosomal replication initiator protein DnaA [Escherichia coli
           F11]
 gi|192930514|gb|EDV83121.1| chromosomal replication initiator protein DnaA [Escherichia coli
           E22]
 gi|192957474|gb|EDV87920.1| chromosomal replication initiator protein DnaA [Escherichia coli
           E110019]
 gi|194413812|gb|EDX30090.1| chromosomal replication initiator protein DnaA [Escherichia coli
           B171]
 gi|194420758|gb|EDX36834.1| chromosomal replication initiator protein DnaA [Shigella
           dysenteriae 1012]
 gi|194425233|gb|EDX41217.1| chromosomal replication initiator protein DnaA [Escherichia coli
           101-1]
 gi|209914438|dbj|BAG79512.1| DNA replication initiator protein DnaA [Escherichia coli SE11]
 gi|215267114|emb|CAS11561.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli O127:H6
           str. E2348/69]
 gi|218354156|emb|CAV00757.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli 55989]
 gi|218363036|emb|CAR00675.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli IAI1]
 gi|218367546|emb|CAR05331.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli S88]
 gi|218372537|emb|CAR20412.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli IAI39]
 gi|218429554|emb|CAR10518.2| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli ED1a]
 gi|218434445|emb|CAR15373.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli UMN026]
 gi|222035416|emb|CAP78161.1| chromosomal replication initiator protein dnaA [Escherichia coli
           LF82]
 gi|226838884|gb|EEH70911.1| chromosomal replication initiation protein [Escherichia sp. 1_1_43]
 gi|226902766|gb|EEH89025.1| chromosomal replication initiation protein [Escherichia sp.
           3_2_53FAA]
 gi|238860149|gb|ACR62147.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli BW2952]
 gi|242379241|emb|CAQ34046.1| chromosomal replication initiator protein DnaA; DNA-binding
           transcriptional dual regulator [Escherichia coli
           BL21(DE3)]
 gi|253322480|gb|ACT27082.1| chromosomal replication initiator protein DnaA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975554|gb|ACT41225.1| chromosomal replication initiation protein [Escherichia coli B str.
           REL606]
 gi|253979710|gb|ACT45380.1| chromosomal replication initiation protein [Escherichia coli
           BL21(DE3)]
 gi|257761660|dbj|BAI33157.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli O103:H2
           str. 12009]
 gi|260447280|gb|ACX37702.1| chromosomal replication initiator protein DnaA [Escherichia coli
           DH1]
 gi|281180756|dbj|BAI57086.1| DNA replication initiator protein DnaA [Escherichia coli SE15]
 gi|284923785|emb|CBG36883.1| chromosomal replication initiator protein [Escherichia coli 042]
 gi|291321658|gb|EFE61094.1| chromosomal replication initiator protein DnaA [Escherichia coli
           B088]
 gi|291425633|gb|EFE98669.1| dnaA [Escherichia coli FVEC1412]
 gi|291431206|gb|EFF04199.1| chromosomal replication initiator protein DnaA [Escherichia coli
           B185]
 gi|294493541|gb|ADE92297.1| chromosomal replication initiator protein DnaA [Escherichia coli
           IHE3034]
 gi|298276919|gb|EFI18437.1| chromosomal replication initiator protein dnaA [Escherichia coli
           FVEC1302]
 gi|299878457|gb|EFI86668.1| replication initiator protein DnaA [Escherichia coli MS 196-1]
 gi|305850341|gb|EFM50798.1| chromosomal replication initiation protein [Escherichia coli NC101]
 gi|306906912|gb|EFN37421.1| chromosomal replication initiator protein DnaA [Escherichia coli W]
 gi|307555842|gb|ADN48617.1| chromosomal replication initiator protein DnaA [Escherichia coli
           ABU 83972]
 gi|307628778|gb|ADN73082.1| chromosomal replication initiation protein [Escherichia coli UM146]
 gi|309704149|emb|CBJ03496.1| chromosomal replication initiator protein [Escherichia coli ETEC
           H10407]
 gi|312287449|gb|EFR15357.1| chromosomal replication initiator protein DnaA [Escherichia coli
           2362-75]
 gi|312948269|gb|ADR29096.1| chromosomal replication initiation protein [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315063008|gb|ADT77335.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli W]
 gi|320174824|gb|EFW49947.1| Chromosomal replication initiator protein DnaA [Shigella
           dysenteriae CDC 74-1112]
 gi|320193752|gb|EFW68385.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           WV_060327]
 gi|323164686|gb|EFZ50481.1| chromosomal replication initiator protein DnaA [Shigella sonnei
           53G]
 gi|323376398|gb|ADX48666.1| chromosomal replication initiator protein DnaA [Escherichia coli
           KO11]
 gi|323934947|gb|EGB31325.1| chromosomal replication initiator protein DnaA [Escherichia coli
           E1520]
 gi|323939235|gb|EGB35448.1| chromosomal replication initiator protein DnaA [Escherichia coli
           E482]
 gi|323944174|gb|EGB40254.1| chromosomal replication initiator protein DnaA [Escherichia coli
           H120]
 gi|323949945|gb|EGB45829.1| chromosomal replication initiator protein DnaA [Escherichia coli
           H252]
 gi|323955004|gb|EGB50782.1| chromosomal replication initiator protein DnaA [Escherichia coli
           H263]
 gi|323959767|gb|EGB55417.1| chromosomal replication initiator protein DnaA [Escherichia coli
           H489]
 gi|323971179|gb|EGB66425.1| chromosomal replication initiator protein DnaA [Escherichia coli
           TA007]
 gi|324115946|gb|EGC09872.1| chromosomal replication initiator protein DnaA [Escherichia coli
           E1167]
 gi|330908019|gb|EGH36538.1| chromosomal replication initiator protein DnaA [Escherichia coli
           AA86]
 gi|331053259|gb|EGI25292.1| replication initiation protein DnaA [Escherichia coli TA206]
 gi|331057862|gb|EGI29848.1| replication initiation protein DnaA [Escherichia coli TA143]
 gi|331062608|gb|EGI34528.1| replication initiation protein DnaA [Escherichia coli TA271]
 gi|331077797|gb|EGI49009.1| replication initiation protein DnaA [Escherichia coli H299]
 gi|332084015|gb|EGI89222.1| chromosomal replication initiator protein DnaA [Shigella
           dysenteriae 155-74]
 gi|332084892|gb|EGI90075.1| chromosomal replication initiator protein DnaA [Shigella boydii
           5216-82]
 gi|332089364|gb|EGI94468.1| chromosomal replication initiator protein DnaA [Shigella boydii
           3594-74]
 gi|332104863|gb|EGJ08209.1| chromosomal replication initiation protein [Shigella sp. D9]
 gi|332345693|gb|AEE59027.1| chromosomal replication initiator protein DnaA [Escherichia coli
           UMNK88]
 gi|332997868|gb|EGK17476.1| chromosomal replication initiator protein DnaA [Shigella flexneri
           K-272]
 gi|333013663|gb|EGK33028.1| chromosomal replication initiator protein DnaA [Shigella flexneri
           K-227]
          Length = 467

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|297518857|ref|ZP_06937243.1| chromosomal replication initiation protein [Escherichia coli OP50]
          Length = 457

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 122 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 181

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 182 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 241

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 242 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 301

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 302 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 356


>gi|260857887|ref|YP_003231778.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli O26:H11
           str. 11368]
 gi|257756536|dbj|BAI28038.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli O26:H11
           str. 11368]
          Length = 467

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|170018062|ref|YP_001723016.1| chromosomal replication initiation protein [Escherichia coli ATCC
           8739]
 gi|189044638|sp|B1IYP2|DNAA_ECOLC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|169752990|gb|ACA75689.1| chromosomal replication initiator protein DnaA [Escherichia coli
           ATCC 8739]
          Length = 467

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|158834309|gb|ABW81954.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834325|gb|ABW81962.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834327|gb|ABW81963.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834329|gb|ABW81964.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834331|gb|ABW81965.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834333|gb|ABW81966.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834337|gb|ABW81968.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834339|gb|ABW81969.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834341|gb|ABW81970.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834343|gb|ABW81971.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834345|gb|ABW81972.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834347|gb|ABW81973.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834351|gb|ABW81975.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
 gi|158834353|gb|ABW81976.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
          Length = 306

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 93/229 (40%), Gaps = 26/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90
            D  +   + + A      +   P      + L G +G GK+ L +     I + K+++ 
Sbjct: 51  FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 110

Query: 91  -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133
                      ++ K+L +  I+       +   +L++DI      +    + FH  N++
Sbjct: 111 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 170

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            + +  +++T+  +P         L SR      V I+ P+ +    +++K   +  I +
Sbjct: 171 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 230

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++A +I +R+  ++   E  ++++   A   G  IT     + L++ 
Sbjct: 231 PGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 279


>gi|117625978|ref|YP_859301.1| chromosomal replication initiation protein [Escherichia coli APEC
           O1]
 gi|227883923|ref|ZP_04001728.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli 83972]
 gi|293413156|ref|ZP_06655822.1| chromosomal replication initiator protein DnaA [Escherichia coli
           B354]
 gi|300815051|ref|ZP_07095276.1| replication initiator protein DnaA [Escherichia coli MS 107-1]
 gi|300824313|ref|ZP_07104429.1| replication initiator protein DnaA [Escherichia coli MS 119-7]
 gi|300896031|ref|ZP_07114592.1| replication initiator protein DnaA [Escherichia coli MS 198-1]
 gi|300903023|ref|ZP_07120965.1| replication initiator protein DnaA [Escherichia coli MS 84-1]
 gi|300917468|ref|ZP_07134128.1| replication initiator protein DnaA [Escherichia coli MS 115-1]
 gi|300925526|ref|ZP_07141401.1| replication initiator protein DnaA [Escherichia coli MS 182-1]
 gi|300932333|ref|ZP_07147601.1| replication initiator protein DnaA [Escherichia coli MS 187-1]
 gi|300947537|ref|ZP_07161714.1| replication initiator protein DnaA [Escherichia coli MS 116-1]
 gi|300956292|ref|ZP_07168594.1| replication initiator protein DnaA [Escherichia coli MS 175-1]
 gi|300983653|ref|ZP_07176694.1| replication initiator protein DnaA [Escherichia coli MS 200-1]
 gi|300984540|ref|ZP_07177030.1| replication initiator protein DnaA [Escherichia coli MS 45-1]
 gi|301020909|ref|ZP_07184964.1| replication initiator protein DnaA [Escherichia coli MS 69-1]
 gi|301047520|ref|ZP_07194596.1| replication initiator protein DnaA [Escherichia coli MS 185-1]
 gi|301305952|ref|ZP_07212034.1| replication initiator protein DnaA [Escherichia coli MS 124-1]
 gi|301325006|ref|ZP_07218556.1| replication initiator protein DnaA [Escherichia coli MS 78-1]
 gi|301644374|ref|ZP_07244375.1| replication initiator protein DnaA [Escherichia coli MS 146-1]
 gi|309795749|ref|ZP_07690164.1| replication initiator protein DnaA [Escherichia coli MS 145-7]
 gi|331644426|ref|ZP_08345555.1| replication initiation protein DnaA [Escherichia coli H736]
 gi|331649528|ref|ZP_08350614.1| replication initiation protein DnaA [Escherichia coli M605]
 gi|331655362|ref|ZP_08356361.1| replication initiation protein DnaA [Escherichia coli M718]
 gi|331675192|ref|ZP_08375945.1| replication initiation protein DnaA [Escherichia coli TA280]
 gi|331679800|ref|ZP_08380470.1| replication initiation protein DnaA [Escherichia coli H591]
 gi|115515102|gb|ABJ03177.1| chromosomal replication initiation protein [Escherichia coli APEC
           O1]
 gi|227839201|gb|EEJ49667.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli 83972]
 gi|291468289|gb|EFF10784.1| chromosomal replication initiator protein DnaA [Escherichia coli
           B354]
 gi|300300580|gb|EFJ56965.1| replication initiator protein DnaA [Escherichia coli MS 185-1]
 gi|300306876|gb|EFJ61396.1| replication initiator protein DnaA [Escherichia coli MS 200-1]
 gi|300316879|gb|EFJ66663.1| replication initiator protein DnaA [Escherichia coli MS 175-1]
 gi|300360091|gb|EFJ75961.1| replication initiator protein DnaA [Escherichia coli MS 198-1]
 gi|300398376|gb|EFJ81914.1| replication initiator protein DnaA [Escherichia coli MS 69-1]
 gi|300404929|gb|EFJ88467.1| replication initiator protein DnaA [Escherichia coli MS 84-1]
 gi|300408373|gb|EFJ91911.1| replication initiator protein DnaA [Escherichia coli MS 45-1]
 gi|300415272|gb|EFJ98582.1| replication initiator protein DnaA [Escherichia coli MS 115-1]
 gi|300418366|gb|EFK01677.1| replication initiator protein DnaA [Escherichia coli MS 182-1]
 gi|300452874|gb|EFK16494.1| replication initiator protein DnaA [Escherichia coli MS 116-1]
 gi|300459919|gb|EFK23412.1| replication initiator protein DnaA [Escherichia coli MS 187-1]
 gi|300523200|gb|EFK44269.1| replication initiator protein DnaA [Escherichia coli MS 119-7]
 gi|300531943|gb|EFK53005.1| replication initiator protein DnaA [Escherichia coli MS 107-1]
 gi|300838803|gb|EFK66563.1| replication initiator protein DnaA [Escherichia coli MS 124-1]
 gi|300848100|gb|EFK75860.1| replication initiator protein DnaA [Escherichia coli MS 78-1]
 gi|301077315|gb|EFK92121.1| replication initiator protein DnaA [Escherichia coli MS 146-1]
 gi|308120628|gb|EFO57890.1| replication initiator protein DnaA [Escherichia coli MS 145-7]
 gi|315254611|gb|EFU34579.1| replication initiator protein DnaA [Escherichia coli MS 85-1]
 gi|315285493|gb|EFU44938.1| replication initiator protein DnaA [Escherichia coli MS 110-3]
 gi|315292860|gb|EFU52212.1| replication initiator protein DnaA [Escherichia coli MS 153-1]
 gi|315296900|gb|EFU56188.1| replication initiator protein DnaA [Escherichia coli MS 16-3]
 gi|324008038|gb|EGB77257.1| replication initiator protein DnaA [Escherichia coli MS 57-2]
 gi|324012737|gb|EGB81956.1| replication initiator protein DnaA [Escherichia coli MS 60-1]
 gi|324018430|gb|EGB87649.1| replication initiator protein DnaA [Escherichia coli MS 117-3]
 gi|331036720|gb|EGI08946.1| replication initiation protein DnaA [Escherichia coli H736]
 gi|331042026|gb|EGI14170.1| replication initiation protein DnaA [Escherichia coli M605]
 gi|331047377|gb|EGI19455.1| replication initiation protein DnaA [Escherichia coli M718]
 gi|331067637|gb|EGI39039.1| replication initiation protein DnaA [Escherichia coli TA280]
 gi|331072972|gb|EGI44297.1| replication initiation protein DnaA [Escherichia coli H591]
          Length = 471

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 195

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370


>gi|323177714|gb|EFZ63298.1| chromosomal replication initiator protein DnaA [Escherichia coli
           1180]
          Length = 444

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILIKKAD 288

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343


>gi|259910295|ref|YP_002650651.1| Chromosomal replication initiator protein [Erwinia pyrifoliae
           Ep1/96]
 gi|224965917|emb|CAX57450.1| Chromosomal replication initiator protein [Erwinia pyrifoliae
           Ep1/96]
          Length = 463

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 128 VNTRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 188 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 308 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362


>gi|82546034|ref|YP_409981.1| chromosomal replication initiation protein [Shigella boydii Sb227]
 gi|123769372|sp|Q31UV5|DNAA_SHIBS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|81247445|gb|ABB68153.1| DnaA [Shigella boydii Sb227]
          Length = 467

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|323965763|gb|EGB61214.1| chromosomal replication initiator protein DnaA [Escherichia coli
           M863]
 gi|323975231|gb|EGB70335.1| chromosomal replication initiator protein DnaA [Escherichia coli
           TW10509]
 gi|327250845|gb|EGE62547.1| chromosomal replication initiator protein DnaA [Escherichia coli
           STEC_7v]
          Length = 467

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|109896333|ref|YP_659588.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas
           atlantica T6c]
 gi|109698614|gb|ABG38534.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas
           atlantica T6c]
          Length = 474

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 93/231 (40%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSR 89
              D+ +   + + A          P +    + + G +G GK+ L +     I  +K  
Sbjct: 143 YKFDNFVEGKSNQLARAASKQVSDNPGKAYNPLFIYGGTGLGKTHLLHAVGNGIIDNKKD 202

Query: 90  STRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIIN 131
           +T           ++ K+L +  I+       +   +L++DI      +    + FH  N
Sbjct: 203 ATVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFN 262

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++ + +  +++T+  +P         L SR      + I  P+ +    ++++   + +I
Sbjct: 263 ALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKALENKI 322

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 323 VLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 373


>gi|158834319|gb|ABW81959.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
          Length = 306

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 94/229 (41%), Gaps = 26/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90
            D  +   + + A      +   P      + L G +G GK+ L +     I + K+++ 
Sbjct: 51  FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 110

Query: 91  -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133
                      ++ K+L +  I+       +   +L++DI      +    + FH  N++
Sbjct: 111 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 170

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            + +  +++T+  +P         L SR      V I+ P+ +    +++K   +  I +
Sbjct: 171 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 230

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +++A +I +R+  ++   E  ++++   A   G  IT     + L++ 
Sbjct: 231 PREVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 279


>gi|30065010|ref|NP_839181.1| chromosomal replication initiation protein [Shigella flexneri 2a
           str. 2457T]
 gi|30043271|gb|AAP18992.1| replication initiation protein DnaA [Shigella flexneri 2a str.
           2457T]
 gi|281603071|gb|ADA76055.1| Chromosomal replication initiator protein dnaA [Shigella flexneri
           2002017]
 gi|313647710|gb|EFS12158.1| chromosomal replication initiator protein DnaA [Shigella flexneri
           2a str. 2457T]
 gi|332750694|gb|EGJ81102.1| chromosomal replication initiator protein DnaA [Shigella flexneri
           4343-70]
 gi|332751785|gb|EGJ82183.1| chromosomal replication initiator protein DnaA [Shigella flexneri
           2747-71]
 gi|332997470|gb|EGK17086.1| chromosomal replication initiator protein DnaA [Shigella flexneri
           K-218]
 gi|333013259|gb|EGK32632.1| chromosomal replication initiator protein DnaA [Shigella flexneri
           K-304]
          Length = 467

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAACQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|220930851|ref|YP_002507759.1| chromosomal replication initiator protein DnaA [Halothermothrix
           orenii H 168]
 gi|219992161|gb|ACL68764.1| chromosomal replication initiator protein DnaA [Halothermothrix
           orenii H 168]
          Length = 463

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 85/238 (35%), Gaps = 26/238 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------ 85
               + D  +V ++   A     +    P+R    + + G  G GK+ L    +      
Sbjct: 123 NPKYTFDTFVVGNSNRFAHAASLAVAEAPARAYNPLFIYGDVGLGKTHLMQAIAHFILDH 182

Query: 86  -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                      +   +   + I         +  + +   L++DI  L   +    + FH
Sbjct: 183 NPDKKVVYVSSETFTNELINAIKDDRTVEFRNKYRNIDILLVDDIQFLAGKERTQEEFFH 242

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS+H+ +  L++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 243 TFNSLHEANKQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKPDLETRIAILRKKADL 302

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             + +  ++  YI  +++ ++   E  + K+   +      I   LA E LK+    D
Sbjct: 303 EDLEVPNEVIIYIANKIQSNIRELEGALIKVIAYSSLVNREIDIDLAQEALKDLVAKD 360


>gi|154496124|ref|ZP_02034820.1| hypothetical protein BACCAP_00408 [Bacteroides capillosus ATCC
           29799]
 gi|150274679|gb|EDN01743.1| hypothetical protein BACCAP_00408 [Bacteroides capillosus ATCC
           29799]
          Length = 426

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 82/215 (38%), Gaps = 28/215 (13%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS 88
            P     + +  +V S+ + A     S    P +    + + G SG GK+ L    + K 
Sbjct: 85  LPGTEDYTFERFVVGSSNKFAHAAALSVAENPGKSYNPLFIYGESGLGKTHLLYAIAHKI 144

Query: 89  RSTR-----------------FSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQ 125
            +TR                    I +  +    +   +    L++D+  +   +    +
Sbjct: 145 HATRPDFRVVYIKGDAFTNELIQAIREGSNQEFREKFRSADVFLMDDVQFIAGRESSQEE 204

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVK 184
           +FH  N++++    ++ TA   P    + L D L +R +    V I  PD +    +I  
Sbjct: 205 MFHTFNTLYEAGRQIVFTADRPPKEM-LRLDDRLKTRFEWGLPVDIKPPDYETRVAIIKN 263

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               R + + + +  YI + +  ++   E  V+K+
Sbjct: 264 KAIRRGMELPEPVLQYIAENITSNVRQIEGTVNKI 298


>gi|239825585|ref|YP_002948209.1| chromosomal replication initiation protein [Geobacillus sp. WCH70]
 gi|259645252|sp|C5D327|DNAA_GEOSW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|239805878|gb|ACS22943.1| chromosomal replication initiator protein DnaA [Geobacillus sp.
           WCH70]
          Length = 450

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 95/255 (37%), Gaps = 29/255 (11%)

Query: 16  QKNDQPKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69
           Q++ +   K  +    FP        + D  ++ S    A     +    P++    + +
Sbjct: 92  QRSSKKHRKPYEESTDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFI 151

Query: 70  VGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV- 111
            G  G GK+ L +                   S+K  +   + I  +      +  + V 
Sbjct: 152 YGGVGLGKTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVD 211

Query: 112 --LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
             L++DI  L   +    + FH  N++H+    +++++   P         L SR +   
Sbjct: 212 VLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGL 271

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  I+ PD +    ++ K        I  ++  YI  +++ ++   E  + ++   +   
Sbjct: 272 ITDITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLI 331

Query: 227 GMGITRSLAAEVLKE 241
              IT  LAAE LK+
Sbjct: 332 NKEITADLAAEALKD 346


>gi|307265438|ref|ZP_07546994.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919552|gb|EFN49770.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 443

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  +V ++ + A     +    P++    + + G  G GK+ L +         
Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKH 168

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           +S        +++  + L+++ K                +L++DI  +   +    + FH
Sbjct: 169 QSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKKAQT 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++ AY+ ++++ ++   E  + ++   +      I   L    LKE
Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKSNIDLELTKHALKE 341


>gi|260885410|ref|ZP_05734994.2| bacterial DnaA protein helix-turn-helix protein [Prevotella
           tannerae ATCC 51259]
 gi|260852301|gb|EEX72170.1| bacterial DnaA protein helix-turn-helix protein [Prevotella
           tannerae ATCC 51259]
          Length = 460

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 93/265 (35%), Gaps = 36/265 (13%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRD----DLLVHSAIEQAVRL---IDSWPSWPS- 64
           P ++K ++ ++   +          ++RD      +   A + A  +   I   P  P+ 
Sbjct: 105 PRREKVEKVEDAPRRERLD----PQLNRDYTFKAFVEGRANKLARVIGLAIAKEPGKPAF 160

Query: 65  RVVILVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSI 103
               L GPSG GK+ L                     A+++  +   +   N        
Sbjct: 161 NPFFLYGPSGVGKTHLVNAIGLRILESQPERRVLYVPAHLFKTQYTDSVLHNTINDF-IH 219

Query: 104 LIDTRKPVLLEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
              T   ++++DI  +         FHI N + Q    +++T    PV +      + +R
Sbjct: 220 FYQTIDVLIIDDIQEITTAKTQQAFFHIFNHLQQNGRQIIITCDRAPVDFEGIEERMLTR 279

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K  TV ++  PD      ++        +     +  YI   +E S+   + +V+ +  
Sbjct: 280 FKWGTVTEMEKPDVALRRAILTAKIKRDGLKFPPDVIDYIANNVESSVRELQGIVNSIMA 339

Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246
            ++     I + L  +V+      +
Sbjct: 340 YSVVDNCDICQDLVEKVVARAVNLE 364


>gi|299820842|ref|ZP_07052731.1| DNA-directed DNA replication initiator protein [Listeria grayi DSM
           20601]
 gi|299817863|gb|EFI85098.1| DNA-directed DNA replication initiator protein [Listeria grayi DSM
           20601]
          Length = 456

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 98/266 (36%), Gaps = 35/266 (13%)

Query: 5   KEDYSFFVPDKQKND---QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61
           +E + +  P K  +D    P+N +  L            D  ++ S    A     +   
Sbjct: 95  EEKFEYVTPKKHLDDIEENPENSKHML------NPRYVFDTFVIGSGNRFAHAASLAVAE 148

Query: 62  WPSRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---- 109
            P++    + + G  G GK+ L +         K  +      ++   +  I + +    
Sbjct: 149 APAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQHKENANVMYLSSEKFTNEFISSIRDNKS 208

Query: 110 -----------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                       +L++DI  L   +    + FH  N+++     +++++   P       
Sbjct: 209 EEFRAKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLE 268

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E  
Sbjct: 269 DRLRSRFEWGLITDITPPDLETRIAILRKKAKADGLDIPNEVMLYIANQIDSNIRELEGA 328

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKE 241
           + ++   +      IT  LAAE LK+
Sbjct: 329 LIRVVAYSSLVNKDITAGLAAEALKD 354


>gi|120434989|ref|YP_860675.1| chromosomal replication initiation protein [Gramella forsetii
           KT0803]
 gi|117577139|emb|CAL65608.1| chromosomal replication initiator protein DnaA [Gramella forsetii
           KT0803]
          Length = 475

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 90/260 (34%), Gaps = 37/260 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + D+ L   +   A     +  + P      
Sbjct: 125 FIIPGIRNV----KIESQL------NPNYNFDNFLEGESNRLARSAGLAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234

Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++DI LL          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QIIDVLVVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    +I        + + + +  ++   ++ ++   E  +  +   
Sbjct: 295 KWGLSAELQHPDFETRVSIIKSKLYRDGVEMPEDIVEFLANNIKTNIRELEGAIISLIAH 354

Query: 223 ALSRGMGITRSLAAEVLKET 242
           +      IT  LA +++   
Sbjct: 355 SSFNKKDITLDLAKKIVDNY 374


>gi|218291094|ref|ZP_03495117.1| chromosomal replication initiator protein DnaA [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238979|gb|EED06186.1| chromosomal replication initiator protein DnaA [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 454

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 85/238 (35%), Gaps = 26/238 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ +    A     +    P+     + + G  G GK+ L +         
Sbjct: 117 NPRYTFDSFVIGAGNRFAHAACLAVAERPANAYNPLFIYGGVGLGKTHLMHAIGHYVRQH 176

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S++  +   + I            + V   L++DI  +   +    + FH
Sbjct: 177 YPNFKVSYISSERFTNEFIAAIRDKNPDSFRARYRTVDVLLIDDIQFIANKEQTQEEFFH 236

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS+H+    +++++   P         L SR +   +  I  PD +    ++ +    
Sbjct: 237 TFNSLHEVGKQIVISSDRPPREIPTLEDRLRSRFEWGLITDIQPPDLETRIAILQRKAKA 296

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             + +   + A+I  +++ ++   E  + ++   +      ++ +LA E LK+    +
Sbjct: 297 DGLDVPVDVLAFIANQIDSNIRELEGALTRVIAYSSLVKEDLSVALAEEALKDLIHPN 354


>gi|320201270|gb|EFW75851.1| Chromosomal replication initiator protein DnaA [Escherichia coli
           EC4100B]
          Length = 418

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|161486853|ref|NP_780810.2| chromosomal replication initiation protein [Clostridium tetani E88]
          Length = 454

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A     +    P++    + + G  G GK+ L +         
Sbjct: 118 NPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 177

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + V   L++DI  +   +    + FH
Sbjct: 178 NSNVKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 237

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 238 TFNALHEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 297

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I+  LA+E LK+
Sbjct: 298 EHLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 350


>gi|82779231|ref|YP_405580.1| chromosomal replication initiation protein [Shigella dysenteriae
           Sd197]
 gi|309784248|ref|ZP_07678887.1| chromosomal replication initiator protein DnaA [Shigella
           dysenteriae 1617]
 gi|123769515|sp|Q329B6|DNAA_SHIDS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|81243379|gb|ABB64089.1| DnaA [Shigella dysenteriae Sd197]
 gi|308927755|gb|EFP73223.1| chromosomal replication initiator protein DnaA [Shigella
           dysenteriae 1617]
          Length = 467

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|28202301|gb|AAO34747.1| chromosomal replication initiator protein dnaA [Clostridium tetani
           E88]
          Length = 342

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A     +    P++    + + G  G GK+ L +         
Sbjct: 6   NPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 65

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + V   L++DI  +   +    + FH
Sbjct: 66  NSNVKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 125

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 126 TFNALHEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 185

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I+  LA+E LK+
Sbjct: 186 EHLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 238


>gi|237729024|ref|ZP_04559505.1| chromosomal replication initiation protein [Citrobacter sp. 30_2]
 gi|226909646|gb|EEH95564.1| chromosomal replication initiation protein [Citrobacter sp. 30_2]
          Length = 471

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 195

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370


>gi|283480419|emb|CAY76335.1| Chromosomal replication initiator protein dnaA [Erwinia pyrifoliae
           DSM 12163]
          Length = 475

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 140 VNTRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 199

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 200 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 259

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 260 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 319

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 320 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 374


>gi|146297771|ref|YP_001192362.1| chromosomal replication initiator protein DnaA [Flavobacterium
           johnsoniae UW101]
 gi|146152189|gb|ABQ03043.1| chromosomal replication initiator protein DnaA [Flavobacterium
           johnsoniae UW101]
          Length = 475

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 92/259 (35%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          S D+ L   +   A     +  + P      
Sbjct: 125 FVIPGIRNL----KIESQL------NPNYSFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++        ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEVKDKYPEKTVLYISAEIFTQQYIDSVKKNNRNDFIHFY 234

Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + +   +++D+  L          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QLIDVLIIDDVQFLSGKSGTQDVFFHIFNYLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++  +     + + + +  Y+ + ++ ++   E  +  +   
Sbjct: 295 KWGLSAELHQPDYETRISILKNILYRDGVDMPEDILEYVARNIKSNVRELEGAIISLIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           +      +T  LA  V+++
Sbjct: 355 SSFNKKEVTIELAKSVVEK 373


>gi|302390798|ref|YP_003826618.1| chromosomal replication initiator protein DnaA [Acetohalobium
           arabaticum DSM 5501]
 gi|302202875|gb|ADL11553.1| chromosomal replication initiator protein DnaA [Acetohalobium
           arabaticum DSM 5501]
          Length = 449

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S+   A     +    P++    + + G  G GK+ L +     I   
Sbjct: 114 NPKYTFDTFVIGSSNRFAHAASLAVAEAPAKAYNPLFIYGDVGLGKTHLMHAIGHYIIEH 173

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
            S        ++   + LI++ +                +L++DI  L   +    + FH
Sbjct: 174 NSDLKVVYVTSEKFTNELINSIRDDNTVKFRNKYRNIDILLIDDIQFLAGKERTQEEFFH 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 234 TFNALHEANKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQEPDLETRIAILRKKATL 293

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +  ++  YI  ++  ++   E  + ++   +      IT  LA E LK+
Sbjct: 294 EDLEVPNEVIVYIANQIHSNIRELEGALIRVVAYSSLTNKEITVELAQEALKD 346


>gi|324111599|gb|EGC05580.1| chromosomal replication initiator protein DnaA [Escherichia
           fergusonii B253]
 gi|325499509|gb|EGC97368.1| chromosomal replication initiation protein [Escherichia fergusonii
           ECD227]
          Length = 466

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 131 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 190

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 251 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 310

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 311 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365


>gi|218551232|ref|YP_002385024.1| chromosomal replication initiation protein [Escherichia fergusonii
           ATCC 35469]
 gi|218358774|emb|CAQ91431.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia fergusonii
           ATCC 35469]
          Length = 470

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 135 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 194

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 195 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 254

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 255 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 314

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 315 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 369


>gi|258510021|ref|YP_003183455.1| chromosomal replication initiator protein DnaA [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476747|gb|ACV57066.1| chromosomal replication initiator protein DnaA [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 454

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 85/238 (35%), Gaps = 26/238 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ +    A     +    P+     + + G  G GK+ L +         
Sbjct: 117 NPRYTFDSFVIGAGNRFAHAACLAVAERPANAYNPLFIYGGVGLGKTHLMHAIGHYVRQH 176

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S++  +   + I            + V   L++DI  +   +    + FH
Sbjct: 177 YPNFKVSYISSERFTNEFIAAIRDKNPDSFRARYRTVDVLLIDDIQFIANKEQTQEEFFH 236

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS+H+    +++++   P         L SR +   +  I  PD +    ++ +    
Sbjct: 237 TFNSLHEVGKQIVISSDRPPREIPTLEDRLRSRFEWGLITDIQPPDLETRIAILQRKAKA 296

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             + +   + A+I  +++ ++   E  + ++   +      ++ +LA E LK+    +
Sbjct: 297 DGLDVPVDVLAFIANQIDSNIRELEGALTRVIAYSSLVKEDLSVALAEEALKDLIHPN 354


>gi|210624036|ref|ZP_03294153.1| hypothetical protein CLOHIR_02105 [Clostridium hiranonis DSM 13275]
 gi|210153243|gb|EEA84249.1| hypothetical protein CLOHIR_02105 [Clostridium hiranonis DSM 13275]
          Length = 462

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------S 85
               + D  ++ ++   A     +    P++    + L G  G GK+ L          +
Sbjct: 127 NPKYTFDTFVIGNSNSFAHAACVAVAESPAKSYNPLFLYGGVGLGKTHLMQAIGHHILEA 186

Query: 86  DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFH 128
           D ++   + +  K  + ++                    +L++D+  +   +    + FH
Sbjct: 187 DSTQKVVYVSSEKFTNELVNSIKDDKNEEFRNKYRNVDVLLIDDVQFIAGKERTQEEFFH 246

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 247 TFNTLHEANKQIIISSDRPPKDIPTLEERLRSRFEMGLITDIQPPDFETRIAILRKKAQM 306

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               +  ++  YI + ++ ++   E  + ++   +      ++  +A E LK+
Sbjct: 307 DNTEVPDEVTDYIAKNVKSNIRELEGALTRVMAYSSLTKKKVSLEVATEALKD 359


>gi|52424540|ref|YP_087677.1| chromosomal replication initiation protein [Mannheimia
           succiniciproducens MBEL55E]
 gi|61212538|sp|Q65VB8|DNAA_MANSM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|52306592|gb|AAU37092.1| DnaA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 457

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 99/257 (38%), Gaps = 28/257 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVI 68
           P +     P+N+  Q  F          ++ +   + + A  +     + P       + 
Sbjct: 101 PVQHSAPMPENEP-QAAFRSNLNQHHLFENFVEGKSNQLARAVGQKVANRPGDKSANPLF 159

Query: 69  LVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------I 116
           L G +G GK+ L +     I +  S +      A+      +   K   +E+       +
Sbjct: 160 LYGGTGLGKTHLLHAVGNGIIAGNSNARVVYIHAERFVQEYVKALKAERIENFKKFYRSL 219

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           D L  +D            + F+  NS+ + +  +++T+  +P         L SR    
Sbjct: 220 DALLIDDIQFFAGKDGTQEEFFNTFNSLFEGEKQIILTSDRYPREIEKIDDRLKSRFSWG 279

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             + I  PD +    +++K   ++ I++ +++A +I Q++  ++   E  ++++   A  
Sbjct: 280 LSIAIEPPDLETRVAILMKKAEEKNIYLPEEVAFFIGQKLRTNVRELEGALNRVHANADF 339

Query: 226 RGMGITRSLAAEVLKET 242
            G  IT     E LK+ 
Sbjct: 340 TGKAITIDFVRETLKDM 356


>gi|187731749|ref|YP_001882464.1| chromosomal replication initiation protein [Shigella boydii CDC
           3083-94]
 gi|226735848|sp|B2TUS6|DNAA_SHIB3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|187428741|gb|ACD08015.1| chromosomal replication initiator protein DnaA [Shigella boydii CDC
           3083-94]
          Length = 467

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDILLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|170766828|ref|ZP_02901281.1| chromosomal replication initiator protein DnaA [Escherichia
           albertii TW07627]
 gi|170124266|gb|EDS93197.1| chromosomal replication initiator protein DnaA [Escherichia
           albertii TW07627]
          Length = 467

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|255533487|ref|YP_003093859.1| chromosomal replication initiator protein DnaA [Pedobacter
           heparinus DSM 2366]
 gi|255346471|gb|ACU05797.1| chromosomal replication initiator protein DnaA [Pedobacter
           heparinus DSM 2366]
          Length = 476

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 90/260 (34%), Gaps = 39/260 (15%)

Query: 10  FFVPDKQK-NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           F +P  +K N  P     QL          + ++ +       A     +  + P     
Sbjct: 125 FIIPGLKKLNVDP-----QL------NANYTFENYIEGDCNRLARSAGYAVAAKPGGTSF 173

Query: 67  --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107
             +++ G  G GK+ LA                     +K       ++  +  +  ++ 
Sbjct: 174 NPLMIYGGVGLGKTHLAQAIGNEIKRNMPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNF 233

Query: 108 RKP---VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            +    ++++D+      +      FHI N +HQ    +++++   P         L SR
Sbjct: 234 YQAMDVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQVILSSDKAPKDLAGLEERLLSR 293

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K      + +PD +    ++ K      I +  ++  Y+   ++ ++   E  +  +  
Sbjct: 294 FKWGLSADLQVPDLETRIAILRKKMYADGIELPAEVVEYVAHNIDNNVRELEGAMVSLLA 353

Query: 222 LALSRGMGITRSLAAEVLKE 241
            +      I  +LA ++LK 
Sbjct: 354 QSTLNKKDIDLALAKQMLKN 373


>gi|167764848|ref|ZP_02436969.1| hypothetical protein BACSTE_03240 [Bacteroides stercoris ATCC
           43183]
 gi|167697517|gb|EDS14096.1| hypothetical protein BACSTE_03240 [Bacteroides stercoris ATCC
           43183]
          Length = 463

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 95/267 (35%), Gaps = 35/267 (13%)

Query: 11  FVPDKQKNDQPKNKEEQLF---FSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
            +P KQ  D+      Q+       P      + D  +   + + +  + ++    P++ 
Sbjct: 103 IMPQKQTIDKAIP---QIPVPDLD-PHLNPEYNFDTFIEGYSNKLSRSVAEAVALNPAKT 158

Query: 67  ----VILVGPSGSGKSCLANIWSDK-------SRSTRFSNIA---KSLDSILIDTRKPVL 112
               + L G SG GK+ LAN    K        R    S      +  DS+  +T    +
Sbjct: 159 IFNPLFLYGASGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFI 218

Query: 113 -------------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
                        +++   +       FHI N +HQ    L++T+   PV        L 
Sbjct: 219 NFYQTIDILIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLI 278

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +R K   V ++  P  +  + ++        +    ++  YI + +  S+   E +V  +
Sbjct: 279 TRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPPEVIDYIAENVGNSVRDLEGIVISI 338

Query: 220 DNLALSRGMGITRSLAAEVLKETQQCD 246
              +      I   LA  ++++   C+
Sbjct: 339 MAHSTIYNKEIDLELAQRIVRKVVNCE 365


>gi|300853233|ref|YP_003778217.1| putative chromosomal replication initiator protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300433348|gb|ADK13115.1| predicted chromosomal replication initiator protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 450

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A     +    PS+    + + G  G GK+ L +         
Sbjct: 114 NPKYTFDSFVIGNSNRFAHAASLAVAESPSKAYNPLFIYGGVGLGKTHLMHAIGHYILNN 173

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + +   L++DI  +   +    + FH
Sbjct: 174 NSKSKVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDVLLIDDIQFIAGKERTQEEFFH 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 234 TFNALYEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADV 293

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I+  LA E LK+
Sbjct: 294 ENLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISIDLAVEALKD 346


>gi|260774981|ref|ZP_05883881.1| chromosomal replication initiator protein dnaA [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609071|gb|EEX35230.1| chromosomal replication initiator protein dnaA [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 459

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 26/227 (11%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK----------- 87
           + +   + +  +         P      + L G +G GK+ L +   +            
Sbjct: 132 NFVEGKSNQLGLAAARQVADNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVV 191

Query: 88  --SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQ 135
                    ++ K+L +  I+       +   +L++DI      +    + FH  N++ +
Sbjct: 192 YMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLE 251

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
            +  +++T+  +P         L SR      V I  P+ +    +++K   D QI +  
Sbjct: 252 GNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQIHLAD 311

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 EVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 358


>gi|54307245|ref|YP_128265.1| chromosomal replication initiation protein [Photobacterium
           profundum SS9]
 gi|61212603|sp|Q6LW50|DNAA_PHOPR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|46911665|emb|CAG18463.1| Putative DnaA chromosomal replication initiator protein
           [Photobacterium profundum SS9]
          Length = 474

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----WSD 86
                + ++ +   + +    A R +   P      + L G +G GK+ L +      +D
Sbjct: 139 VNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIAD 198

Query: 87  K---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
           +                ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 199 RKPNARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 258

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 259 HTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 318

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 319 NHNIRLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 373


>gi|260870433|ref|YP_003236835.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli O111:H-
           str. 11128]
 gi|257766789|dbj|BAI38284.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Escherichia coli O111:H-
           str. 11128]
          Length = 467

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILIKKAD 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366


>gi|260063127|ref|YP_003196207.1| chromosomal replication initiation protein [Robiginitalea biformata
           HTCC2501]
 gi|88784696|gb|EAR15866.1| chromosomal replication initiation protein [Robiginitalea biformata
           HTCC2501]
          Length = 474

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 94/259 (36%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + ++ L   +   A     +  + P      
Sbjct: 125 FVIPGIRNI----KIESQL------NPSYNFENFLEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLVFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVRKNTRNDFIHFY 234

Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + +   +++D+  L          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QLIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++        + + +++  Y+ + ++ ++   E  +  +   
Sbjct: 295 KWGLSAELQSPDYETRVCILKNKLYRDGVEMPEEIIDYVAKHIKSNIRELEGAIISLIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           +      +T  LA +V+++
Sbjct: 355 SSFNKKEVTLDLAQQVVEK 373


>gi|209693643|ref|YP_002261571.1| chromosomal replication initiation protein [Aliivibrio salmonicida
           LFI1238]
 gi|226735772|sp|B6EP46|DNAA_ALISL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|208007594|emb|CAQ77694.1| chromosomal replication initiator protein DnaA [Aliivibrio
           salmonicida LFI1238]
          Length = 468

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 88/242 (36%), Gaps = 30/242 (12%)

Query: 31  SFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN- 82
                          + +   + +  +         P      + L G +G GK+ L   
Sbjct: 126 DLNHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLQA 185

Query: 83  ----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND 123
               I   K  +            ++ K+L +  I+       +   +L++DI      +
Sbjct: 186 VGNAILERKPNAKVVYMHSERFVQDMVKALQNNAIEEFKCYYRSVDALLIDDIQFFANKE 245

Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + FH  N++ + +  +++T+  +P         L SR      V I  P+ +    
Sbjct: 246 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 305

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +++K   D QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L+
Sbjct: 306 ILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVVANANFTGRAITIDFVREALR 365

Query: 241 ET 242
           + 
Sbjct: 366 DL 367


>gi|51891139|ref|YP_073830.1| chromosomal replication initiation protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|61212552|sp|Q67TK7|DNAA_SYMTH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|51854828|dbj|BAD38986.1| chromosomal replication initiation protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 458

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 86/237 (36%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------S 85
               + +  +V ++   A     +    P+R    + + G  G GK+ L +         
Sbjct: 122 NPKYTFETFVVGNSNRFAHAAALAVAETPARTYNPLFIYGGVGLGKTHLMHAIGHYVLQH 181

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
           + +    + +     +  ++  +K               +L++DI  L   +    + +H
Sbjct: 182 NPTAKVAYVSTETFTNEFIMAIQKGSTTAFQNRYRKVDVLLIDDIQFLAGKEATQEEFYH 241

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+I + +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 242 TFNAIREANKQIVISSDRPPKEIPTLEDRLRSRFEWGLICDIQPPDLETRTAILRKKAQS 301

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             I +  ++  YI   +E ++   E  + ++   A      +T  LA + LK+    
Sbjct: 302 EGIQVPDEVTNYIATNIETNIRELEGALTRVVAYANMLKCPLTYDLAVQALKDILPP 358


>gi|330685249|gb|EGG96910.1| chromosomal replication initiator protein DnaA [Staphylococcus
           epidermidis VCU121]
          Length = 454

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 94/257 (36%), Gaps = 35/257 (13%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGP 72
           Q  D P   E+            + D  ++         A   +   P+     + + G 
Sbjct: 106 QNVDNPGGIEQ-------FNTHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGG 158

Query: 73  SGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRK---------------PVL 112
            G GK+ L +            +      ++   +  I + +                +L
Sbjct: 159 VGLGKTHLMHAIGHHVLDNNPNANVIYTSSEKFTNEFIKSIRDNQGDAFREKYRNIDVLL 218

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVV 168
           ++DI  +   +    + FH  N +H  +  +++++   P      L D L SR +   +V
Sbjct: 219 IDDIQFIQNKEQTQEEFFHTFNELHNNNKQIVISSDRPPKEIS-KLSDRLRSRFEWGLIV 277

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G 
Sbjct: 278 DITPPDYETRMAILQKKIEEENLDIPMESLNYIANQIQSNIRELEGALTRLLAYSQLQGK 337

Query: 229 GITRSLAAEVLKETQQC 245
            IT  LAAE LK+  Q 
Sbjct: 338 PITTELAAEALKDIIQA 354


>gi|239637286|ref|ZP_04678273.1| chromosomal replication initiator protein DnaA [Staphylococcus
           warneri L37603]
 gi|239597123|gb|EEQ79633.1| chromosomal replication initiator protein DnaA [Staphylococcus
           warneri L37603]
          Length = 454

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 94/257 (36%), Gaps = 35/257 (13%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGP 72
           Q  D P   E+            + D  ++         A   +   P+     + + G 
Sbjct: 106 QNVDNPGGIEQ-------FNTHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGG 158

Query: 73  SGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRK---------------PVL 112
            G GK+ L +            +      ++   +  I + +                +L
Sbjct: 159 VGLGKTHLMHAIGHHVLDNNPNANVIYTSSEKFTNEFIKSIRDNQGDAFREKYRNIDVLL 218

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVV 168
           ++DI  +   +    + FH  N +H  +  +++++   P      L D L SR +   +V
Sbjct: 219 IDDIQFIQNKEQTQEEFFHTFNELHNNNKQIVISSDRPPKEIS-KLSDRLRSRFEWGLIV 277

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            I+ PD +    ++ K   +  + I  +   YI  +++ ++   E  + ++   +  +G 
Sbjct: 278 DITPPDYETRMAILQKKIEEENLDIPMESLNYIANQIQSNIRELEGALTRLLAYSQLQGK 337

Query: 229 GITRSLAAEVLKETQQC 245
            IT  LAAE LK+  Q 
Sbjct: 338 PITTELAAEALKDIIQA 354


>gi|297616215|ref|YP_003701374.1| chromosomal replication initiator protein DnaA [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144052|gb|ADI00809.1| chromosomal replication initiator protein DnaA [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 436

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 84/232 (36%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW--------- 84
             + D  +V ++   A     +    PS     + + G  G GK+ L             
Sbjct: 97  KYTFDTFVVGNSNRFAHAACYAVAEAPSDSYNPLFIYGGVGLGKTHLMQAIGHHILRKDP 156

Query: 85  --------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHII 130
                   S++  +    +I     +   +  + V   L++DI  +   +    + FH  
Sbjct: 157 SYKIVYVSSEQFTNDLIDSIRDRKTAEFRNKYRSVDLLLVDDIQFVAGKEQTQEEFFHTF 216

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L++++   P         L SR +   +  I  PD +    ++ K      
Sbjct: 217 NALYEANKQLVISSDRPPRDIPTLEDRLRSRFEWGLITDIQPPDFETRLAILRKKAQLEN 276

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +   + +YI   ++ ++   E  + ++   A      +T  LA + LK+ 
Sbjct: 277 FNVPNDVMSYIADYIQSNIRELEGALIRIVAYANISNQPVTLELAEQTLKDV 328


>gi|15893299|ref|NP_346648.1| chromosomal replication initiation protein [Clostridium
           acetobutylicum ATCC 824]
 gi|38257741|sp|Q97N35|DNAA_CLOAB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|15022818|gb|AAK77988.1|AE007513_1 DNA replication initiator protein, ATPase [Clostridium
           acetobutylicum ATCC 824]
 gi|325507408|gb|ADZ19044.1| chromosomal replication initiation protein [Clostridium
           acetobutylicum EA 2018]
          Length = 446

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
                 D  ++ ++   A     +    P++    + + G  G GK+ L           
Sbjct: 110 NPKYKFDSFVIGNSNRFAHAACLAVAEAPAKAYNPLFIYGGVGLGKTHLMQAIGHYILDN 169

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + V   L++D+  +   +    + FH
Sbjct: 170 NPKAKVVYVSSEKFTNELINSIKDDKNVEFRNKYRNVDVLLIDDVQFIAGKERTQEEFFH 229

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 230 TFNALHENNKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADV 289

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I   +  YI  +++ ++   E  + ++   +      I+  LA+E LK+
Sbjct: 290 EHLNIPNDVMVYIATQIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 342


>gi|163802133|ref|ZP_02196028.1| chromosomal replication initiation protein [Vibrio sp. AND4]
 gi|159173938|gb|EDP58748.1| chromosomal replication initiation protein [Vibrio sp. AND4]
          Length = 468

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 89/235 (37%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                  ++ +   + +    A R +   P      + L G +G GK+ L +   +    
Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192

Query: 88  ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
                            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 193 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             QI +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 313 AHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367


>gi|319788988|ref|YP_004150621.1| chromosomal replication initiator protein DnaA [Thermovibrio
           ammonificans HB-1]
 gi|317113490|gb|ADU95980.1| chromosomal replication initiator protein DnaA [Thermovibrio
           ammonificans HB-1]
          Length = 471

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 88/279 (31%), Gaps = 46/279 (16%)

Query: 10  FFVPDKQKNDQPKNK-----EEQLFFSF-------------PRCLGISRDDLLVHSAIEQ 51
            F P K +   P         +QL                       + ++ +V ++ + 
Sbjct: 66  VFGPVKVEFTVPSEPVKTPQPQQLELGLFKKSQKKEEELQSNLNPKYTFENFIVGTSNQF 125

Query: 52  AVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI---------------------WSDK 87
           A     +    P +    + + G  G GK+ L                        + ++
Sbjct: 126 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLMQAIGNYIKKKSPWKKVIYVTTETFMNQ 185

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTA 144
                 S+   S           +L++DI  +   +    + FH  N+++     +++T+
Sbjct: 186 LIEALKSDNISSFREKY-RNIDVLLIDDIQFIGGKERTQIEFFHTFNALYDAGKQVVLTS 244

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P         L SR +   +  I  PD +    ++ +      I +  K+   I   
Sbjct: 245 DRPPKDIPTLTERLRSRFEWGLIADIQPPDFETRVAILKRKAELEGIEVSDKVIKLIATI 304

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           ++ ++   E  + K+   A   G  IT  L  E+  +  
Sbjct: 305 IKSNIRQLEGALIKLKAKATLEGKPITERLVRELFSQES 343


>gi|315650192|ref|ZP_07903267.1| DNA-directed DNA replication initiator protein [Eubacterium
           saburreum DSM 3986]
 gi|315487549|gb|EFU77857.1| DNA-directed DNA replication initiator protein [Eubacterium
           saburreum DSM 3986]
          Length = 462

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 32/244 (13%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSW----PSWPSRVVILVGPSGSGKSCLAN---- 82
               + D  +V  +       A+ + +S     P        + G  G GK+ L +    
Sbjct: 120 NPAYTFDTFVVGKSNDLAHATAIAVAESPGSQNPGEHYNPFFIYGGVGLGKTHLMHSIAH 179

Query: 83  -IWSDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND--- 123
            I      +      ++   +  ID  K                +L++DI  +   D   
Sbjct: 180 YILEHNPDANILYVSSEKFLNEYIDALKNSNLAEYRAKYRNVDVLLIDDIQFIGGKDAIQ 239

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +LFH  N++++    +++++   P+        L SR      V+I  PD +    ++ 
Sbjct: 240 EELFHTFNALYEQKKQIILSSDKPPMELKNLEERLRSRFAWGVAVEIFSPDFETRMAILR 299

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKET 242
                    ID ++  +I   ++ ++   E  ++K+  ++ L++   I   LA  VLK+ 
Sbjct: 300 SKEERDGKNIDNEVIQFIATNIKSNIRMLEGALNKLYAMSRLNKNQEIDIDLAKSVLKDM 359

Query: 243 QQCD 246
              D
Sbjct: 360 ITPD 363


>gi|218128622|ref|ZP_03457426.1| hypothetical protein BACEGG_00192 [Bacteroides eggerthii DSM 20697]
 gi|317475576|ref|ZP_07934838.1| chromosomal replication initiator protein DnaA [Bacteroides
           eggerthii 1_2_48FAA]
 gi|217989224|gb|EEC55538.1| hypothetical protein BACEGG_00192 [Bacteroides eggerthii DSM 20697]
 gi|316908280|gb|EFV29972.1| chromosomal replication initiator protein DnaA [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 464

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 28/242 (11%)

Query: 33  PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87
           P      + D  +   + + +  + ++    P++     + L G SG GK+ LAN    K
Sbjct: 124 PHLNPEYNFDTFIEGYSNKLSRSVAEAVALNPAKTIFNPLFLYGASGVGKTHLANAIGTK 183

Query: 88  -------SRSTRFSNIA---KSLDSILIDTRKPVL-------------LEDIDLLDFNDT 124
                   R    S      +  DS+  +T    +             +++   +     
Sbjct: 184 IKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQEFAGVTKTQN 243

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             FHI N +HQ    L++T+   PV        L +R K   V ++  P  +  + ++  
Sbjct: 244 TFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELEKPTVELRKNILRN 303

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 +    ++  YI + +  S+   E +V  +   +      I   LA  ++++   
Sbjct: 304 KIHRDGLQFPPEVIDYIAENVGNSVRDLEGIVISIMAHSTIYNKEIDLELAQRIVRKVVN 363

Query: 245 CD 246
           C+
Sbjct: 364 CE 365


>gi|311070648|ref|YP_003975571.1| chromosomal replication initiation protein [Bacillus atrophaeus
           1942]
 gi|310871165|gb|ADP34640.1| chromosomal replication initiation protein [Bacillus atrophaeus
           1942]
          Length = 446

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 97/267 (36%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKNDQ--PKNK----EEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q  +   PK       ++    FP        + D  ++ S    A     +  
Sbjct: 78  FVIPQNQDEEDFMPKPPIKKVAKEEPSDFPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108
             P++    + + G  G GK+ L +         + S    + +  K  +  +   R   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197

Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344


>gi|308171892|ref|YP_003918597.1| chromosomal replication initiator protein DnaA [Bacillus
           amyloliquefaciens DSM 7]
 gi|307604756|emb|CBI41127.1| chromosomal replication initiator protein DnaA [Bacillus
           amyloliquefaciens DSM 7]
 gi|328909960|gb|AEB61556.1| chromosomal replication initiator protein DnaA [Bacillus
           amyloliquefaciens LL3]
          Length = 446

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKNDQPKNKEE------QLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q  +    K +      +    FP        + D  ++ S    A     +  
Sbjct: 78  FVIPQNQDEENFMPKPQVKKAAKEEPSDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108
             P++    + + G  G GK+ L +         + S    + +  K  +  +   R   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197

Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344


>gi|328551701|gb|AEB22193.1| chromosomal replication initiation protein [Bacillus
           amyloliquefaciens TA208]
          Length = 446

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKNDQPKNKEE------QLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q  +    K +      +    FP        + D  ++ S    A     +  
Sbjct: 78  FVIPQNQDEENFMPKPQVEKAAKEEPSDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108
             P++    + + G  G GK+ L +         + S    + +  K  +  +   R   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197

Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344


>gi|121998017|ref|YP_001002804.1| chromosomal replication initiation protein [Halorhodospira
           halophila SL1]
 gi|166214674|sp|A1WWE0|DNAA_HALHL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|121589422|gb|ABM62002.1| chromosomal replication initiator protein DnaA [Halorhodospira
           halophila SL1]
          Length = 449

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 82/250 (32%), Gaps = 26/250 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75
            Q  ++  Q         G + D  +   + + A          P      + L G  G 
Sbjct: 99  AQRSSEPRQRPVDSNLNPGFTFDSFVEGKSNQLARAASMQVADNPGGAYNPLFLYGGVGL 158

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------------KPVLLED 115
           GK+ L +   +  R+ R       L S                            +L++D
Sbjct: 159 GKTHLMHAVGNAIRTARPEARVLYLHSERFVAEMVKALQHNAINEFKRHYRNLDALLIDD 218

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I      +    + FH  N++ + +  ++MT   +P         L SR      V I  
Sbjct: 219 IQFFAGKERSQEEFFHTFNALLESEQQVIMTCDRYPKEVNGLEERLKSRFGWGLTVAIEP 278

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+ +    ++        + +  ++A ++ +R+  ++   E  + ++   A   G  I  
Sbjct: 279 PELETRVAILKSKAIRDGVDLPDEVAFFVAKRLRSNVRELEGALRRITANAQFTGRAIDV 338

Query: 233 SLAAEVLKET 242
             A E L++ 
Sbjct: 339 DFAKEALRDL 348


>gi|254457518|ref|ZP_05070946.1| chromosomal replication initiator protein DnaA [Campylobacterales
           bacterium GD 1]
 gi|207086310|gb|EDZ63594.1| chromosomal replication initiator protein DnaA [Campylobacterales
           bacterium GD 1]
          Length = 435

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 98/255 (38%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
           DK+   Q   ++ Q           + D+ +V  + + A   + S    P  V   + + 
Sbjct: 83  DKRIKLQKTEQKLQHSL---LNPSHTFDNFMVGGSNQFAYAAVKSVSESPGEVYNPLFIY 139

Query: 71  GPSGSGKSCLAN----IWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVL 112
           G  G GK+ L      ++ ++ +S  ++++ + L+  +   R                +L
Sbjct: 140 GGVGLGKTHLMQSAGNVFQNQGKSVIYTSVEQFLNDFIRHVRNKTMPSFQEKYRKCDVLL 199

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  L   +    + FH   ++      +++TA   P   G     L SR +   V  
Sbjct: 200 IDDIQFLSNKEGIQEEFFHTFEALKGSGKQIILTADKHPKKIGGLEKRLQSRFEWGLVAD 259

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  P+ +    +I K     ++ +   +  YI   +E ++   E ++ K+   +    + 
Sbjct: 260 IQPPELETKIAIIKKKCEINKVKLSNDIINYIATVIESNVREIEGILSKLHAYSQLMHID 319

Query: 230 ITRSLAAEVLKETQQ 244
           I  +    VLK+  Q
Sbjct: 320 IDLAFTKNVLKDQLQ 334


>gi|317046239|ref|YP_004113887.1| chromosomal replication initiator protein DnaA [Pantoea sp. At-9b]
 gi|316947856|gb|ADU67331.1| chromosomal replication initiator protein DnaA [Pantoea sp. At-9b]
          Length = 466

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
                + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 131 VNNRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 190

Query: 86  DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127
            K  +            ++ K+L +  I+       +   +L++DI      +    + F
Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 251 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 310

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 311 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365


>gi|331083519|ref|ZP_08332631.1| chromosomal replication initiator protein dnaA [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330404212|gb|EGG83760.1| chromosomal replication initiator protein dnaA [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 454

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 99/268 (36%), Gaps = 35/268 (13%)

Query: 9   SFFVPDKQKND---QPKNKEEQLFFSF---PRCLGISRDDLLVHSAIEQAVRL---IDSW 59
           S  +P+  K +    P      L  +          + D  +V +  + A      +   
Sbjct: 80  SLVLPEDIKEEFKEPPAAAPVSLNENIEKANLNPRYTFDTFVVGNNNKMAHAASLAVAES 139

Query: 60  PSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK----- 109
           P      + + G  G GK+ L +     +      +      ++   + LID+ +     
Sbjct: 140 PGEAYNPLFIYGGVGLGKTHLMHSIAHFVLQKNPSAKVLYVTSEYFTNELIDSIRNGNNT 199

Query: 110 -------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         +L++DI  +   +    + FH  N++H     +++++   P    +
Sbjct: 200 TMSKFREKYRNIDVLLIDDIQFIIGKESTQEEFFHTFNALHGAKKQIVISSDKPPKDMEI 259

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR +   +V IS PD +    ++ K        ID ++  YI + ++ ++   E
Sbjct: 260 LEDRLRSRFEWGLIVDISSPDYETRMAILRKKEELDGYKIDDEVIEYIAKNVKSNIRELE 319

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKE 241
             ++K+   A      I  +LA +VLK+
Sbjct: 320 GSLNKIMAYANLEKSEINLALAEKVLKD 347


>gi|302872923|ref|YP_003841556.1| chromosomal replication initiator protein DnaA [Clostridium
           cellulovorans 743B]
 gi|307687876|ref|ZP_07630322.1| chromosomal replication initiation protein [Clostridium
           cellulovorans 743B]
 gi|302575780|gb|ADL49792.1| chromosomal replication initiator protein DnaA [Clostridium
           cellulovorans 743B]
          Length = 451

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + +  ++ ++   A     +    P++    + + G  G GK+ L +         
Sbjct: 115 NPKYTFNSFVIGNSNRFAHAACLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILKN 174

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  +    +L++DI  +   +    + FH
Sbjct: 175 NSKAKVAYVSSEKFTNELINSIKDDKNEEFRNKYRNVDLLLIDDIQFIAGKERTQEEFFH 234

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++  +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 235 TFNALYDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRIAILKKKADV 294

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ +  ++  YI   ++ ++   E  + ++   +      I+  LA E LK+
Sbjct: 295 EKLNVPNEVLTYIATTIKSNIRELEGALIRIVAFSSLTNKEISVDLAQEALKD 347


>gi|326797445|ref|YP_004315264.1| Chromosomal replication initiator protein dnaA [Sphingobacterium
           sp. 21]
 gi|326548209|gb|ADZ76594.1| Chromosomal replication initiator protein dnaA [Sphingobacterium
           sp. 21]
          Length = 476

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 86/260 (33%), Gaps = 39/260 (15%)

Query: 10  FFVPDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPS 64
           F +P  +K    P     QL          + D+ +       A      +         
Sbjct: 125 FVIPGLKKLQVDP-----QL------NQNYTFDNFIEGDCNRLARSAGFAVASKPGGTSF 173

Query: 65  RVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107
             +++ G  G GK+ LA                     +K       ++  +  +  ++ 
Sbjct: 174 NPLMIYGGVGLGKTHLAQAIGNEVKRHMPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNF 233

Query: 108 RKP---VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            +    ++++D+      D      FHI N +HQ    +++T+   P         L SR
Sbjct: 234 YQAMDVIIMDDVHNFAGKDKTQDIFFHIFNHLHQSGKQIILTSDKAPKDLAGLEERLLSR 293

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K      + +PD +    ++ K      I +  ++  Y+   ++ ++   E  +  +  
Sbjct: 294 FKWGLSADMQVPDLETRMAILKKKMYADGIELPYEVVEYVANNIDNNVRELEGAMVSLLA 353

Query: 222 LALSRGMGITRSLAAEVLKE 241
            A      I  +LA  +LK 
Sbjct: 354 QATLNKKEIDLNLAKSMLKN 373


>gi|298209110|ref|YP_003717289.1| chromosomal replication initiation protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849037|gb|EAP86906.1| chromosomal replication initiation protein [Croceibacter atlanticus
           HTCC2559]
          Length = 475

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 88/260 (33%), Gaps = 37/260 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + +  L   +   A     +  + P      
Sbjct: 125 FIIPGIRNV----KIESQL------NPNYNFESFLEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234

Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++DI LL          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QIIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    +I        + + + +  ++   ++ ++   E  +  +   
Sbjct: 295 KWGLSAELQHPDFETRIAIIKSKLYRDGVEMPEDIVEFLANNIKTNIRELEGAIISLIAH 354

Query: 223 ALSRGMGITRSLAAEVLKET 242
           +      IT  LA  ++   
Sbjct: 355 SSFNKKDITLELAKSIVDNY 374


>gi|260588817|ref|ZP_05854730.1| DNA replication initiator protein, ATPase [Blautia hansenii DSM
           20583]
 gi|260540596|gb|EEX21165.1| DNA replication initiator protein, ATPase [Blautia hansenii DSM
           20583]
          Length = 456

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 99/268 (36%), Gaps = 35/268 (13%)

Query: 9   SFFVPDKQKND---QPKNKEEQLFFSF---PRCLGISRDDLLVHSAIEQAVRL---IDSW 59
           S  +P+  K +    P      L  +          + D  +V +  + A      +   
Sbjct: 82  SLVLPEDIKEEFKEPPTAAPVSLNENIEKANLNPRYTFDTFVVGNNNKMAHAASLAVAES 141

Query: 60  PSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK----- 109
           P      + + G  G GK+ L +     +      +      ++   + LID+ +     
Sbjct: 142 PGEAYNPLFIYGGVGLGKTHLMHSIAHFVLQKNPSAKVLYVTSEYFTNELIDSIRNGNNT 201

Query: 110 -------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         +L++DI  +   +    + FH  N++H     +++++   P    +
Sbjct: 202 TMSKFREKYRNIDVLLIDDIQFIIGKESTQEEFFHTFNALHGAKKQIVISSDKPPKDMEI 261

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR +   +V IS PD +    ++ K        ID ++  YI + ++ ++   E
Sbjct: 262 LEDRLRSRFEWGLIVDISSPDYETRMAILRKKEELDGYKIDDEVIEYIAKNVKSNIRELE 321

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKE 241
             ++K+   A      I  +LA +VLK+
Sbjct: 322 GSLNKIMAYANLEKSEINLALAEKVLKD 349


>gi|262375589|ref|ZP_06068822.1| DnaA regulatory inactivator Hda [Acinetobacter lwoffii SH145]
 gi|262309843|gb|EEY90973.1| DnaA regulatory inactivator Hda [Acinetobacter lwoffii SH145]
          Length = 234

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 83/228 (36%), Gaps = 18/228 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D          +  I    +       + G +G+GKS L +   
Sbjct: 2   RQLQLDIEPQLDARISDF-SGPGWGHVIDAIRQLHAGLINRFYIYGGAGTGKSHLLSAIC 60

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDF---NDTQLFHIINSI 133
           D       S I  SL  +L    +          V L+DI+ +         +FH+IN  
Sbjct: 61  DSYLEVGKSAIQVSLLELLDAPTEAITSLDRFDLVALDDIEAISGVPHWQRAVFHLINYN 120

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190
           ++    L+ ++R  P+   + LPDL SRL  A   ++  P          ++  +   R 
Sbjct: 121 NEGGGQLVFSSRFAPIELKLELPDLQSRLTQAVSTRV--PSGSLYADRYALVSSVLDRRG 178

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           I +D ++  Y++           + ++++  L     + ++ +   ++
Sbjct: 179 IHLDPQIFDYLLSHGPHQTSVLLQRLEQIIQLLKGEKLKVSNANLRQI 226


>gi|52078492|ref|YP_077283.1| chromosomal replication initiation protein [Bacillus licheniformis
           ATCC 14580]
 gi|52783856|ref|YP_089685.1| chromosomal replication initiation protein [Bacillus licheniformis
           ATCC 14580]
 gi|319648518|ref|ZP_08002734.1| chromosomal replication initiator protein dnaA [Bacillus sp.
           BT1B_CT2]
 gi|71151793|sp|Q65PM2|DNAA_BACLD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|52001703|gb|AAU21645.1| DnaA [Bacillus licheniformis ATCC 14580]
 gi|52346358|gb|AAU38992.1| DnaA [Bacillus licheniformis ATCC 14580]
 gi|317389597|gb|EFV70408.1| chromosomal replication initiator protein dnaA [Bacillus sp.
           BT1B_CT2]
          Length = 446

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 99/267 (37%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKNDQ--PKNKEEQL----FFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q  +   PK+  +++       FP        + D  ++ S    A     +  
Sbjct: 78  FVIPQNQNEEDFMPKSPIKKMSKEEPADFPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108
             P++    + + G  G GK+ L +         + S    + +  K  +  +   R   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197

Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEETKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344


>gi|294085125|ref|YP_003551885.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664700|gb|ADE39801.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 510

 Score =  118 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 84/237 (35%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDKSR 89
               +  + +V    E A  +              + L G  G GK+ L +   W  + +
Sbjct: 176 DPRYTFANFVVGKPNELAFAVARRTAESEKVAFNPLFLYGGVGLGKTHLMHAIAWHIREQ 235

Query: 90  STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
           +     +  S +  +    + +                  +++D+  +   D    + FH
Sbjct: 236 APSRKVMYLSAEKFMYRFVRALRFRDTMSFKEQFRSVDVLMIDDVQFISGKDSTQEEFFH 295

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    ++++A   P         L SRL    V  I   D +    ++      
Sbjct: 296 TFNALVEDGRQVIISADKSPTDLEGMEERLRSRLGWGMVADIHPADYELRLGILQAKAER 355

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            QI I  K+  ++  ++  ++   E  ++++   A+  G  IT   AA++L +  + 
Sbjct: 356 AQIQIPDKVLEFLAHKIVSNVRELEGALNRIMAHAMLVGREITIESAADLLADLLRA 412


>gi|193213721|ref|YP_001994920.1| chromosomal replication initiation protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087198|gb|ACF12473.1| chromosomal replication initiator protein DnaA [Chloroherpeton
           thalassium ATCC 35110]
          Length = 496

 Score =  118 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 84/238 (35%), Gaps = 29/238 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDKSRS 90
                 ++ +     + A     S    P +     +++ G  G GK+ L     + +R 
Sbjct: 158 NPKYRFENFVKGDCNDLAHAAAKSVSETPGKSSFNPLVIYGGVGLGKTHLIQAIGNHARE 217

Query: 91  T--------------------RFSNIAKSLDSILIDTRKPVLLEDI---DLLDFNDTQLF 127
                                   N      S        ++++DI   +  +    ++F
Sbjct: 218 NNKAKFVMYVSSEKFTIEFVNAIQNNQAHEFSAFYRNVDLLIIDDIQFFERKEKTQEEIF 277

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++HQ +  +++++             L SR +      + LPD +    ++ +   
Sbjct: 278 HIFNTLHQANKQIVLSSDRPIKELKGIEERLLSRFQWGLTADLQLPDYETRRAILQRKLE 337

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +    +D+ +  +I   M  ++   E  LV  +   +L+    I   LA  +L+++ +
Sbjct: 338 ENSATLDESIIDFIATNMTSNIRELEGCLVKLLATASLNAKS-IDLPLAKNILRDSVR 394


>gi|157273531|gb|ABV27430.1| chromosomal replication initiator protein DnaA [Candidatus
           Chloracidobacterium thermophilum]
          Length = 492

 Score =  118 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 26/242 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW- 84
               P     + +  +V S  + A     +    PSR    + + G  G GK+ L +   
Sbjct: 155 PLELPLNPRYTFETFVVGSCNQFARAAAMAVADAPSRTYNPLFIYGGVGLGKTHLMHAIG 214

Query: 85  -----SDKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND-- 123
                 D+     + +  K ++ ++                +   +L++DI  +   +  
Sbjct: 215 HAIRNRDRHMRLVYISSEKFMNELINAIRYDKAQAFREKYRSIDVLLIDDIQFIAGKERT 274

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N+++     +++++   P         L SR +   +  +  PD +    ++
Sbjct: 275 QEEFFHTFNALYDAQKQIVISSDCPPREIPTLEERLHSRFEWGLIADLQPPDLETKVAIL 334

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +     +I +   +A +I  +++ ++   E  + ++   A  +   I   L  EVL   
Sbjct: 335 KRKADLEKIDLSDNVALFIAGKIKSNIRELEGSLIRLIAYASLKQRPIDIELCKEVLNIE 394

Query: 243 QQ 244
           ++
Sbjct: 395 EE 396


>gi|47525234|ref|YP_016331.1| chromosomal replication initiation protein [Geobacter
           sulfurreducens PCA]
 gi|61212658|sp|Q74GG6|DNAA_GEOSL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|41152665|gb|AAR99581.1| chromosomal replication initiator protein DnaA [Geobacter
           sulfurreducens PCA]
 gi|298504141|gb|ADI82864.1| chromosomal replication initiator protein DnaA [Geobacter
           sulfurreducens KN400]
          Length = 445

 Score =  118 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--- 88
               + D  +   + + A     S  + P+     + + G  G GK+ L N   +     
Sbjct: 111 NPKYTFDTFVCGGSNQFAHAAAQSVANSPAGKYNPLFIYGGVGLGKTHLLNAIGNHVLSV 170

Query: 89  --RSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---TQLFH 128
             ++      ++   + LI+                   +L++DI  +   +    + FH
Sbjct: 171 NRKARICFYTSEKFMNELINCLRYQKMDQFRNKFRKMDILLIDDIQFIAGKERTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS+++    +++T+  FP         L SR +   +  I  PD +    ++ K    
Sbjct: 231 TFNSLYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQAPDTETKVAILRKKADA 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +A ++      ++   E ++ ++  ++   G  IT  +A EVLK+
Sbjct: 291 DHISLPDDVALFLASSSTTNVRELEGMLIRLGAVSSLTGKNITLDMAREVLKD 343


>gi|302035395|ref|YP_003795717.1| chromosomal replication initiator protein DnaA [Candidatus
           Nitrospira defluvii]
 gi|300603459|emb|CBK39789.1| Chromosomal replication initiator protein DnaA [Candidatus
           Nitrospira defluvii]
          Length = 446

 Score =  118 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 91/233 (39%), Gaps = 25/233 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW----SDK 87
               +    +V +  + A     +    P++    + L G  G GK+ L N      +++
Sbjct: 112 NPKYTFKSFVVGAGNQFAHAACMAVAEQPAKAYNPLFLYGGVGLGKTHLLNAIGNYLAER 171

Query: 88  SRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHI 129
           S         +   + +I++ +                ++++DI  L   +    + FH 
Sbjct: 172 SDLRIAYLTTEQFTNEVINSIRYDKMIDLRKRYRNVDMLMIDDIQFLAGKERTQEEFFHT 231

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++++    +++++  FP         L SR +   +  +  PD +    ++ K   D 
Sbjct: 232 FNTLYEAHKQIVLSSDRFPKDMPDIEERLRSRFEWGLIADLQPPDVETRIAILRKKSEDE 291

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +I + + +  ++   M+ ++   E  + ++   +   G  IT  +A  VL++ 
Sbjct: 292 RIALPEDVIHFLATTMKNNIRELEGSLVRVGAYSSLTGQTITLDMAKNVLRDL 344


>gi|167957122|ref|ZP_02544196.1| chromosomal replication initiation protein [candidate division TM7
           single-cell isolate TM7c]
          Length = 467

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 89/221 (40%), Gaps = 27/221 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D+ +V S+ + A     +  S P      + L G  G GK+ L       I  +
Sbjct: 134 NPRYTFDNFIVGSSNDLAYATCQAVASHPGEKYNPLFLYGGVGLGKTHLMQATGNEIIKN 193

Query: 87  KSRSTRF-----SNIAKSLDSILIDTRK---------PVLLEDIDLLDFND---TQLFHI 129
             ++        + I   LD I    +           ++++D+  +   +    + FH 
Sbjct: 194 NPQAQILYTTTENFIKDFLDHIRFKKQGFSSKYRNVDVLIVDDMQFIAGKEKTQEEFFHT 253

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +HQ +  +++++   P S       L SR +    + I +PD +    ++    +  
Sbjct: 254 FNELHQNNKQIIISSDKPPKSIPTLTDRLRSRFEWGMTIDIQMPDFETRCAIVEAKASLS 313

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            + + ++ A Y+ Q ++ ++   E  ++++  LAL+   GI
Sbjct: 314 GVELSRETAEYLAQNIKTNIRELEGSLNQL--LALAEMRGI 352


>gi|237806777|ref|YP_002891217.1| chromosomal replication initiator protein DnaA [Tolumonas auensis
           DSM 9187]
 gi|259645264|sp|C4L755|DNAA_TOLAT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|237499038|gb|ACQ91631.1| chromosomal replication initiator protein DnaA [Tolumonas auensis
           DSM 9187]
          Length = 461

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + ++ +   + + A+     +   P      + L G +G GK+ L +   +  R+ 
Sbjct: 127 NETYTFENFVEGKSNQLALAAAHQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIRAR 186

Query: 92  --------------------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128
                                  N A         +   +L++DI      +    + FH
Sbjct: 187 KPNAKVIYMQSERFVQDMVKALQNNAIQEFQRYYRSVDALLIDDIQFFAKKERSQEEFFH 246

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      + I  P+ +    ++++   +
Sbjct: 247 TFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAEE 306

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +  ++A +I +R+  ++   E  ++++   A   G  I      E L++ 
Sbjct: 307 NKIHLPHEVAFFIAKRLRSNVRELEGALNRVIANARFTGKPINIDFVREALRDM 360


>gi|251791868|ref|YP_003006588.1| chromosomal replication initiation protein [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533255|gb|ACS96501.1| chromosomal replication initiator protein DnaA [Aggregatibacter
           aphrophilus NJ8700]
          Length = 453

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWS 85
              +  D+ +   + + A  +       P       + L G +G GK+ L +     I +
Sbjct: 118 NTKLIFDNFVEGKSNQLARAVAQKVADNPGEQTANPLFLYGGTGLGKTHLLHAIGNGIIA 177

Query: 86  DKSRSTRFSNIAKSLDSILI---------------DTRKPVLLEDIDLLDFND---TQLF 127
           +   +      ++     ++                +   +L++DI      +    + F
Sbjct: 178 NNPDARVVYIHSERFVQQVVTYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKTQEEFF 237

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++ +    +++T+  +P         L SR        I  PD +    +++K   
Sbjct: 238 HIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAILMKKAD 297

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I +   +A +I Q++  ++   E  ++++  +   +G  IT     E LK+ 
Sbjct: 298 ENNIELPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPITIDFVRETLKDM 352


>gi|153815423|ref|ZP_01968091.1| hypothetical protein RUMTOR_01658 [Ruminococcus torques ATCC 27756]
 gi|317500885|ref|ZP_07959097.1| chromosomal replication initiator protein dnaA [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089213|ref|ZP_08338115.1| chromosomal replication initiator protein DnaA [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145847282|gb|EDK24200.1| hypothetical protein RUMTOR_01658 [Ruminococcus torques ATCC 27756]
 gi|316897765|gb|EFV19824.1| chromosomal replication initiator protein dnaA [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330405765|gb|EGG85294.1| chromosomal replication initiator protein DnaA [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 456

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 35/247 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V S    A      +   P      + + G  G GK+ L +     I ++
Sbjct: 111 NPKYTFDTFVVGSNNNFAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMHSVAHFILAN 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP---------------------VLLEDIDLLDFND-- 123
                     +++  + LID  K                      +L++DI  +   +  
Sbjct: 171 DPSKKVLYVTSETFTNELIDALKAGKTGSELAMTKFREKYRNNDVLLIDDIQFIIGKEST 230

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N +H     +++++   P         L +R +   +  IS PD +    ++
Sbjct: 231 QEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPDYETRMAIL 290

Query: 183 VKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            K      +    I   +  YI   ++ ++   E  ++K+  L+      I   LAAE L
Sbjct: 291 RKKEELDGLEKYHIPDDVMQYIANNIKSNIRELEGSLNKLIALSNLENKKIDIPLAAEAL 350

Query: 240 KETQQCD 246
           K+    D
Sbjct: 351 KDMISPD 357


>gi|332980606|ref|YP_004462047.1| chromosomal replication initiator protein DnaA [Mahella
           australiensis 50-1 BON]
 gi|332698284|gb|AEE95225.1| chromosomal replication initiator protein DnaA [Mahella
           australiensis 50-1 BON]
          Length = 460

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 100/261 (38%), Gaps = 27/261 (10%)

Query: 13  PDKQKNDQPKNKEEQ-LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68
           P   K D PK++    +  +       + D  ++ ++   A     +    P +    + 
Sbjct: 101 PADNKQDTPKDEALSAISQNDTLNPKYTFDTFVIGNSNRFAHAASLAVAEAPGKAYNPLF 160

Query: 69  LVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV 111
           + G  G GK+ L +                   S+K  +   ++I    + +  +  + +
Sbjct: 161 IYGGVGLGKTHLMHAIGHRILENNPGIRLMYVTSEKFTNELINSIKDDRNEVFRNKYRNI 220

Query: 112 ---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
              L++DI  +   +    + FH  N++++ +  +++++   P         L SR +  
Sbjct: 221 DVLLIDDIQFIANKERTQEEFFHTFNTLYETNHQIIISSDRPPKDIPTLEDRLRSRFEWG 280

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I  PD +    ++ K      I +   +  +I Q+++ ++   E  + K+   A  
Sbjct: 281 LLADIQPPDLETRIAILRKKADMENIKVADDILLFIAQQIQSNIRELEGALVKIMAYASL 340

Query: 226 RGMGITRSLAAEVLKETQQCD 246
               I   +A +VLK+  + D
Sbjct: 341 NERNIDIDVAGDVLKDIIKDD 361


>gi|206900692|ref|YP_002251513.1| chromosomal replication initiator protein DnaA [Dictyoglomus
           thermophilum H-6-12]
 gi|206739795|gb|ACI18853.1| chromosomal replication initiator protein DnaA [Dictyoglomus
           thermophilum H-6-12]
          Length = 441

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 86/238 (36%), Gaps = 28/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSR-- 89
               + D  +V  +   A     +    P +    +++ G  G GK+ L +      +  
Sbjct: 104 NPKYTFDTFVVGDSNRFAHAAALAVSQNPGKAYNPLLIYGGVGLGKTHLIHAIGHSIQEK 163

Query: 90  ---STRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +       +     LID  K                +L++DI  L   +    + F+
Sbjct: 164 YPKARVVYASMEKFTVELIDAIKEDGMTKFRNRYRNIDVLLIDDIQFLAGKERTQEEFFY 223

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++T+   P         L SR +   +  I  PD +    ++ K    
Sbjct: 224 TFNALYEAGKQIVLTSDRVPKEIPTLEDRLRSRFEWGLIADIQPPDLETRIAILKKKAEA 283

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +  +  ++  +I  +++ ++   E  L+  +   +L   M I   LA  VLK+  Q 
Sbjct: 284 EKAKVPDEVIEFIASQIQSNIRELEGALIRTIAFASL-NNMPINLELAKTVLKDIIQP 340


>gi|189501471|ref|YP_001957188.1| chromosomal replication initiation protein [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189496912|gb|ACE05459.1| chromosomal replication initiator protein DnaA [Candidatus
           Amoebophilus asiaticus 5a2]
          Length = 477

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 27/237 (11%)

Query: 35  CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
               + +  +     + A      +     +     ++L G  G GK+ +     ++ ++
Sbjct: 136 NPNYTFETFIEGDCNQLARSAAQAVAKKPGNNAFNPLMLYGKVGLGKTHIVQALGNEVKA 195

Query: 91  T-----RFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFNDTQ---LF 127
                      ++   +  I++                  ++L+D+  L   +      F
Sbjct: 196 HFSNKFVLYASSEQFTTQFIESLRNNSVQDFTHFYLQADVLILDDVQFLVGKEKTQEIFF 255

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N +HQ    ++MT+   P         L SR K      +  PD +    +I     
Sbjct: 256 HIFNHLHQSGKQIVMTSDCPPRDLKGLQERLLSRFKWGLTADLQQPDFETRIAIIKNKIQ 315

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
              I I + L  YI Q ++ ++   E ++  +   A      +   LA +VLK    
Sbjct: 316 ADGIDIGEDLVEYIAQSVDTNIRELEGVIISLIAHASLNKRDVDLGLAKQVLKNIVH 372


>gi|196249894|ref|ZP_03148590.1| chromosomal replication initiator protein DnaA [Geobacillus sp.
           G11MC16]
 gi|196210770|gb|EDY05533.1| chromosomal replication initiator protein DnaA [Geobacillus sp.
           G11MC16]
          Length = 351

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 89/240 (37%), Gaps = 29/240 (12%)

Query: 31  SFP---RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW 84
            FP        + D  ++ S    A     +    P++    + + G  G GK+ L +  
Sbjct: 19  DFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAI 78

Query: 85  -----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND- 123
                            S+K  +   + I  +      +  + V   L++DI  L   + 
Sbjct: 79  GHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQFLAGKEQ 138

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++H+    +++++   P         L SR +   +  I+ PD +    +
Sbjct: 139 TQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAI 198

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + K        I  ++  YI  +++ ++   E  + ++   +      IT  LAAE LK+
Sbjct: 199 LRKKAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEITADLAAEALKD 258


>gi|254478926|ref|ZP_05092288.1| chromosomal replication initiator protein DnaA [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035148|gb|EEB75860.1| chromosomal replication initiator protein DnaA [Carboxydibrachium
           pacificum DSM 12653]
          Length = 462

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  +V ++ + A     +    P++    + + G  G GK+ L +         
Sbjct: 128 NPKYTFDTFVVGNSNKLAHAACLAVAQSPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKN 187

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
            +        +++  + L+++ K                +L++DI  +   +    + FH
Sbjct: 188 HAGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIANKERTQEEFFH 247

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 248 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRVAILKKKAQS 307

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++ AY+ ++++ ++   E  + ++   A      I   L    LK+
Sbjct: 308 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFATLTKSNIDLELTKHALKD 360


>gi|20806543|ref|NP_621714.1| chromosomal replication initiation protein [Thermoanaerobacter
           tengcongensis MB4]
 gi|38257678|sp|Q8RDL6|DNAA_THETN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|20514980|gb|AAM23318.1| ATPase involved in DNA replication initiation [Thermoanaerobacter
           tengcongensis MB4]
          Length = 443

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  +V ++ + A     +    P++    + + G  G GK+ L +         
Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQSPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKN 168

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
            +        +++  + L+++ K                +L++DI  +   +    + FH
Sbjct: 169 HAGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIANKERTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRVAILKKKAQS 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++ AY+ ++++ ++   E  + ++   A      I   L    LK+
Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFATLTKSNIDLELTKHALKD 341


>gi|154684519|ref|YP_001419680.1| chromosomal replication initiation protein [Bacillus
           amyloliquefaciens FZB42]
 gi|166201860|sp|A7Z0C3|DNAA_BACA2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|154350370|gb|ABS72449.1| DnaA [Bacillus amyloliquefaciens FZB42]
          Length = 446

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKNDQPKNKEE------QLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q  +    K +      +    FP        + D  ++ S    A     +  
Sbjct: 78  FVIPQNQDEENFLPKPQVKKAAKEEPSDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108
             P++    + + G  G GK+ L +         + S    + +  K  +  +   R   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197

Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344


>gi|126697567|ref|YP_001086464.1| chromosomal replication initiator protein [Clostridium difficile
           630]
 gi|254977343|ref|ZP_05273815.1| chromosomal replication initiator protein [Clostridium difficile
           QCD-66c26]
 gi|255094673|ref|ZP_05324151.1| chromosomal replication initiator protein [Clostridium difficile
           CIP 107932]
 gi|255102900|ref|ZP_05331877.1| chromosomal replication initiator protein [Clostridium difficile
           QCD-63q42]
 gi|255308720|ref|ZP_05352891.1| chromosomal replication initiator protein [Clostridium difficile
           ATCC 43255]
 gi|255316427|ref|ZP_05358010.1| chromosomal replication initiator protein [Clostridium difficile
           QCD-76w55]
 gi|255519087|ref|ZP_05386763.1| chromosomal replication initiator protein [Clostridium difficile
           QCD-97b34]
 gi|255652270|ref|ZP_05399172.1| chromosomal replication initiator protein [Clostridium difficile
           QCD-37x79]
 gi|255657639|ref|ZP_05403048.1| chromosomal replication initiator protein [Clostridium difficile
           QCD-23m63]
 gi|260681770|ref|YP_003213055.1| chromosomal replication initiator protein [Clostridium difficile
           CD196]
 gi|296452680|ref|ZP_06894371.1| DNA-directed DNA replication initiator protein [Clostridium
           difficile NAP08]
 gi|296880067|ref|ZP_06904036.1| DNA-directed DNA replication initiator protein [Clostridium
           difficile NAP07]
 gi|306521985|ref|ZP_07408332.1| chromosomal replication initiator protein [Clostridium difficile
           QCD-32g58]
 gi|115249004|emb|CAJ66815.1| Chromosomal replication initiator protein [Clostridium difficile]
 gi|260207933|emb|CBA60042.1| chromosomal replication initiator protein [Clostridium difficile
           CD196]
 gi|296258462|gb|EFH05366.1| DNA-directed DNA replication initiator protein [Clostridium
           difficile NAP08]
 gi|296428934|gb|EFH14812.1| DNA-directed DNA replication initiator protein [Clostridium
           difficile NAP07]
          Length = 439

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A     +    P++    + L G  G GK+ L +         
Sbjct: 104 NPKYTFDTFVIGNSNRFAHAACVAVAESPAKAYNPLFLYGGVGLGKTHLMHAIGHHIVSQ 163

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + V   L++DI  +   +    + FH
Sbjct: 164 KKDSKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 223

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 224 TFNTLHEANKQIIISSDRPPKDIPTLEDRLRSRFEMGLITDIQAPDFETRIAILRKKAQL 283

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +I +  ++ +YI + ++ ++   E  + ++   +      I+  LA E LK+
Sbjct: 284 ERIDVPNEVMSYIAKNIKSNIRELEGALTRVVAYSSLSNRVISFDLATEALKD 336


>gi|89101119|ref|ZP_01173955.1| chromosomal replication initiation protein [Bacillus sp. NRRL
           B-14911]
 gi|89084174|gb|EAR63339.1| chromosomal replication initiation protein [Bacillus sp. NRRL
           B-14911]
          Length = 425

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 98/254 (38%), Gaps = 32/254 (12%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K+ +DQP+     L  +       + D  ++ S    A     +    P++    + + 
Sbjct: 75  GKKDDDQPE-----LPLNM-LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIY 128

Query: 71  GPSGSGKSCLANIW----SDKSRSTRFSNIAKS----------LDSILIDTRK------P 110
           G  G GK+ L +       D + + +   ++             D+  +D R        
Sbjct: 129 GGVGLGKTHLMHAIGHYVQDHNPAAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDV 188

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L   +    + FH  N++H+    +++++   P         L SR +   +
Sbjct: 189 LLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLI 248

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I+ PD +    ++ K      + I  ++  YI  +++ ++   E  + ++   +    
Sbjct: 249 TDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLIN 308

Query: 228 MGITRSLAAEVLKE 241
             I   LAAE L++
Sbjct: 309 KDINADLAAEALRD 322


>gi|295135425|ref|YP_003586101.1| chromosomal replication initiator protein DnaA [Zunongwangia
           profunda SM-A87]
 gi|294983440|gb|ADF53905.1| chromosomal replication initiator protein DnaA [Zunongwangia
           profunda SM-A87]
          Length = 475

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 37/260 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + ++ L   +   A     +  + P      
Sbjct: 125 FVIPGIRNV----KIESQL------NPSYNFENFLEGESNRLARSAGLAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234

Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++DI LL          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QIIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    +I        + + +++  ++   ++ ++   E  +  +   
Sbjct: 295 KWGLSAELQHPDFETRVSIIKNKLYRDGVEMPEEIVEFLANNIKANIRELEGAIISLIAH 354

Query: 223 ALSRGMGITRSLAAEVLKET 242
           +      +T  LA +++   
Sbjct: 355 SSFNKKDVTLELAKKIVDNY 374


>gi|238898807|ref|YP_002924489.1| DNA replication initiator protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466567|gb|ACQ68341.1| DNA replication initiator protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 454

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 93/229 (40%), Gaps = 26/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90
            D  +   + + A      +   P      + L G +G GK+ L +     I + K+++ 
Sbjct: 125 FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 184

Query: 91  -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133
                      ++ K+L +  I+       +   +L++DI      +    + FH  N++
Sbjct: 185 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 244

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            + +  +++T+  +P         L SR      V I+ P+ +    +++K   +  I +
Sbjct: 245 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 304

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++A +I +R+  ++   E  ++++   A   G  IT     + L++ 
Sbjct: 305 PGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 353


>gi|158834335|gb|ABW81967.1| transcriptional dual regulator [Candidatus Hamiltonella defensa]
          Length = 306

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 94/229 (41%), Gaps = 26/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90
            D  +   + + A      +   P      + L G +G GK+ L +     I + K+++ 
Sbjct: 51  FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 110

Query: 91  -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133
                      ++ K+L +  I+       +   +L++DI      +    + FH +N++
Sbjct: 111 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTLNAL 170

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            + +  +++T+  +P         L SR      V I+ P+ +    +++K   +  I +
Sbjct: 171 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 230

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++A +I +R+  ++   E  ++++   A   G  IT     + L++ 
Sbjct: 231 PGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 279


>gi|329957669|ref|ZP_08298144.1| replication initiator protein DnaA [Bacteroides clarus YIT 12056]
 gi|328522546|gb|EGF49655.1| replication initiator protein DnaA [Bacteroides clarus YIT 12056]
          Length = 464

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 94/267 (35%), Gaps = 35/267 (13%)

Query: 11  FVPDKQKNDQPKNKEEQLF---FSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
            +P KQ  D+      Q+       P      + D  +   + + +  + ++    P++ 
Sbjct: 103 IIPQKQTIDKAIP---QIPVPDLD-PHLNPEYNFDTFIEGYSNKLSRSVAEAVALNPAKT 158

Query: 67  ----VILVGPSGSGKSCLANIWSDK-------SRSTRFSNIA---KSLDSILIDTRKPVL 112
               + L G SG GK+ LAN    K        R    S      +  DS+  +T    +
Sbjct: 159 IFNPLFLYGASGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFI 218

Query: 113 -------------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
                        +++   +       FHI N +HQ    L++T+   PV        L 
Sbjct: 219 NFYQTIDILIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLI 278

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +R K   V ++  P  +  + ++        +    ++  YI + +  S+   E +V  +
Sbjct: 279 TRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPPEVIDYIAENVGNSVRDLEGIVISI 338

Query: 220 DNLALSRGMGITRSLAAEVLKETQQCD 246
              +      I   LA  ++++    +
Sbjct: 339 MAHSTIYNKEIDLELAQRIVRKVVNSE 365


>gi|325953648|ref|YP_004237308.1| Chromosomal replication initiator protein dnaA [Weeksella virosa
           DSM 16922]
 gi|323436266|gb|ADX66730.1| Chromosomal replication initiator protein dnaA [Weeksella virosa
           DSM 16922]
          Length = 475

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 77/235 (32%), Gaps = 27/235 (11%)

Query: 37  GISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
             + D+ +   +   A      +             + G  G GK+ L +    + +   
Sbjct: 142 RYNFDNFIEGESNRLARTAGKAIAKRPGGTSFNPFFIYGGVGLGKTHLVHAIGQEIKELY 201

Query: 93  -----------------FSNIAKSLDSILIDTR---KPVLLEDIDLLDF---NDTQLFHI 129
                             + +A    +  +        ++++DI  L          FHI
Sbjct: 202 PDKSVLYVSTEKFTMQFINAVANKSQNDFVHFYQMIDVLIIDDIQFLAGKAKTQEAFFHI 261

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N + Q    +++T+   P +     P L SR K     ++ +PD      +I +     
Sbjct: 262 FNDLQQKGKQIILTSDKSPATLTEMEPRLISRFKWGLNAELQMPDASTRRNIIQQKVEKD 321

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            I I + +  YI + +E ++   E  ++ +   +      IT  L  + L    Q
Sbjct: 322 GIEIPETVLDYIAENVETNVRELEGTLNSIIAQSTFNRKEITLDLVKDTLSNIIQ 376


>gi|217966450|ref|YP_002351956.1| chromosomal replication initiator protein DnaA [Dictyoglomus
           turgidum DSM 6724]
 gi|217335549|gb|ACK41342.1| chromosomal replication initiator protein DnaA [Dictyoglomus
           turgidum DSM 6724]
          Length = 443

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 86/238 (36%), Gaps = 28/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSR-- 89
               + D  +V  +   A     +    P +    +++ G  G GK+ L +      +  
Sbjct: 104 NPKYTFDTFVVGDSNRFAHAAALAVSQNPGKAYNPLLIYGGVGLGKTHLIHAIGHSIQEK 163

Query: 90  ---STRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +       +     LID  K                +L++DI  L   +    + F+
Sbjct: 164 YPKARVVYASMEKFTVELIDAIKEDGMTKFRNRYRNIDVLLIDDIQFLAGKERTQEEFFY 223

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++T+   P         L SR +   +  I  PD +    ++ K    
Sbjct: 224 TFNALYEAGKQIVLTSDRVPKEIPTLEDRLRSRFEWGLIADIQPPDLETRIAILKKKAEA 283

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +  +  ++  +I  +++ ++   E  L+  +   +L   M I   LA  VLK+  Q 
Sbjct: 284 EKAKVPDEVIEFIASQIQSNIRELEGALIRTIAFASL-NNMPINLELAKTVLKDIIQP 340


>gi|86132708|ref|ZP_01051300.1| chromosomal replication initiator protein DnaA [Dokdonia
           donghaensis MED134]
 gi|85816662|gb|EAQ37848.1| chromosomal replication initiator protein DnaA [Dokdonia
           donghaensis MED134]
          Length = 475

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 92/260 (35%), Gaps = 37/260 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + ++ L   +   A     +  + P      
Sbjct: 125 FVIPGIRNLQI----ESQL------NPNYNFENFLEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVQIKDKYPAKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234

Query: 109 KPV---LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + +   +++DI LL          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QVIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  P  +    +I +      + + +++  ++   ++ ++   E  +  +   
Sbjct: 295 KWGLSAELQHPSFETRIAIIKQKLYQDGVEMPEEIVEFLANNIKTNVRELEGAIISLIAH 354

Query: 223 ALSRGMGITRSLAAEVLKET 242
           +      IT  LA +++   
Sbjct: 355 SSFNKKEITLDLAKKIVDNY 374


>gi|168183727|ref|ZP_02618391.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum Bf]
 gi|237793321|ref|YP_002860873.1| chromosomal replication initiation protein [Clostridium botulinum
           Ba4 str. 657]
 gi|259645246|sp|C3KXQ7|DNAA_CLOB6 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|182673252|gb|EDT85213.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum Bf]
 gi|229261050|gb|ACQ52083.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum Ba4 str. 657]
          Length = 448

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A     +    P++    + + G  G GK+ L +         
Sbjct: 112 NPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILHN 171

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + +   L++DI  +   +    + FH
Sbjct: 172 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 232 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ I  ++  YI  +++ ++   E  + ++   +      I+  LA+E LK+
Sbjct: 292 EKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 344


>gi|323486749|ref|ZP_08092068.1| chromosomal replication initiator protein dnaA [Clostridium
           symbiosum WAL-14163]
 gi|323694891|ref|ZP_08109041.1| chromosomal replication initiator protein dnaA [Clostridium
           symbiosum WAL-14673]
 gi|323399888|gb|EGA92267.1| chromosomal replication initiator protein dnaA [Clostridium
           symbiosum WAL-14163]
 gi|323500981|gb|EGB16893.1| chromosomal replication initiator protein dnaA [Clostridium
           symbiosum WAL-14673]
          Length = 456

 Score =  117 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 86/241 (35%), Gaps = 29/241 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V +    A      +   P      + + G  G GK+ L +     I  +
Sbjct: 117 NPRYTFDSFVVGANNNLAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMHSIGHFILKN 176

Query: 87  KSRSTRFSNIAKSLDSILIDT------------------RKPVLLEDIDLLDFND---TQ 125
             ++      ++   + LID                      +L++DI  +   +    +
Sbjct: 177 NPQAKVLYVTSEKFTNELIDAIRNKNNISTTEFREKYRNNDILLIDDIQFIIGKESTQEE 236

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+++    +++++   P         L SR +    V I  PD +    ++ K 
Sbjct: 237 FFHTFNSLYEAKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK 296

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                  ID ++  YI   ++ ++   E  + K+  L+      IT  LA E LK+    
Sbjct: 297 EELEGYNIDNEVIKYIATNVKSNIRELEGALTKIVALSKLNKQEITIELAEEALKDLISP 356

Query: 246 D 246
           +
Sbjct: 357 N 357


>gi|255532251|ref|YP_003092623.1| chromosomal replication initiator protein DnaA [Pedobacter
           heparinus DSM 2366]
 gi|255345235|gb|ACU04561.1| chromosomal replication initiator protein DnaA [Pedobacter
           heparinus DSM 2366]
          Length = 476

 Score =  117 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 89/260 (34%), Gaps = 39/260 (15%)

Query: 10  FFVPD-KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---- 64
           F +P  K+ N  P     QL        G + +  +       A     +  + P     
Sbjct: 125 FVIPGLKKMNVDP-----QL------NPGYTFEAYVEGDCNRLARSAGHAVAAKPGATSF 173

Query: 65  RVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107
             +++ G SG GK+ LA                     +K       ++  +  +  ++ 
Sbjct: 174 NPLMIYGSSGLGKTHLAQAIGNEIRRNLPDKLVIYVSCEKFCQQFVESLKNNTINDFVNF 233

Query: 108 RKP---VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            +    ++++D+      +      FHI N +HQ    +++T+   P         L SR
Sbjct: 234 YQAMDVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQIIITSDKAPKDLSGLEERLLSR 293

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K      + +P+ +    ++ K      I +  ++  Y+   ++ ++   E  +  +  
Sbjct: 294 FKWGLSADLQVPELETRIAILRKKMYADGIDLPDEVVEYVAHNIDNNVRELEGAMVSLLA 353

Query: 222 LALSRGMGITRSLAAEVLKE 241
            +      I   LA  +LK 
Sbjct: 354 QSTMNRKEIDLQLAKSMLKN 373


>gi|315634815|ref|ZP_07890097.1| ribosomal subunit interface protein [Aggregatibacter segnis ATCC
           33393]
 gi|315476367|gb|EFU67117.1| ribosomal subunit interface protein [Aggregatibacter segnis ATCC
           33393]
          Length = 453

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWS 85
              +  ++ +   + + A  +       P       + L G +G GK+ L +     I +
Sbjct: 118 NTKLVFENFVEGKSNQLARAVAQKVADNPGEQTANPLFLYGGTGLGKTHLLHAIGNGIIA 177

Query: 86  DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---TQLF 127
           +   +      ++     ++                +   +L++DI      +    + F
Sbjct: 178 NNPEARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKTQEEFF 237

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++ +    +++T+  +P         L SR        I  PD +    +++K   
Sbjct: 238 HIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAILMKKAE 297

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  + +   +A +I Q++  ++   E  ++++  +   +G  IT     E LK+ 
Sbjct: 298 ENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPITIDFVRETLKDM 352


>gi|197302268|ref|ZP_03167327.1| hypothetical protein RUMLAC_00995 [Ruminococcus lactaris ATCC
           29176]
 gi|197298699|gb|EDY33240.1| hypothetical protein RUMLAC_00995 [Ruminococcus lactaris ATCC
           29176]
          Length = 456

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 35/247 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V S    A      +   P      + L G  G GK+ L +     I   
Sbjct: 111 NPKYTFDTFVVGSNNRFAHAASVAVAESPGESYNPLFLYGGVGLGKTHLMHSVAHYILKH 170

Query: 87  KSRSTRFSNIAKSLDSILIDT---------------------RKPVLLEDIDLLDFND-- 123
                     +++  + LI+                         +L++DI  +   +  
Sbjct: 171 DPSKKVLYVTSETFTNELIEALKVGKNGNEMAMTSFREKYRNNDVLLIDDIQFIIGKEST 230

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N++H     +++++   P         L +R +   +  IS PD +    ++
Sbjct: 231 QEEFFHTFNNLHLAGKQIIISSDKPPKDMETLEARLRTRFEWGMIADISSPDYETRMAIL 290

Query: 183 VKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            K      +    I  ++  YI   ++ ++   E  ++K+  L+      I   LAAE L
Sbjct: 291 RKKEELDGLEKYHIPDEVMQYIANNIKSNIRELEGSLNKLIALSNLENKPIDIPLAAEAL 350

Query: 240 KETQQCD 246
           K+    D
Sbjct: 351 KDMISPD 357


>gi|126663416|ref|ZP_01734413.1| chromosomal replication initiator protein [Flavobacteria bacterium
           BAL38]
 gi|126624364|gb|EAZ95055.1| chromosomal replication initiator protein [Flavobacteria bacterium
           BAL38]
          Length = 475

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 92/259 (35%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          S D+ L   +   A     +  + P      
Sbjct: 125 FVIPGIRNL----KIESQL------NANYSFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++        ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEIFTQQYIDSVKKNTRNDFIHFY 234

Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + +   +++D+  L          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QLIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++  +     + I  ++  Y+ + ++ ++   E  +  +   
Sbjct: 295 KWGLSAELHQPDYETRISILKNILFRDGVEIPDEIVEYVAKNIKSNVRELEGAIISLIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           +      +   LA +V+++
Sbjct: 355 SSFNKREVNLELAKQVVEK 373


>gi|332290651|ref|YP_004429260.1| chromosomal replication initiator protein DnaA [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332168737|gb|AEE17992.1| chromosomal replication initiator protein DnaA [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 475

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 92/260 (35%), Gaps = 37/260 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + D+ L   +   A     +  + P      
Sbjct: 125 FVIPGIRNLQI----ESQL------NPNYNFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLVFGGVGLGKTHLAHAIGVQIKDKYPAKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234

Query: 109 KPV---LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + +   +++DI LL          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QVIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  P  +    +I +      + + +++  ++   ++ ++   E  +  +   
Sbjct: 295 KWGLSAELQHPSFETRIAIIKQKLYQDGVEMPEEIVEFLANNIKTNVRELEGAIISLIAH 354

Query: 223 ALSRGMGITRSLAAEVLKET 242
           +      IT  LA +++   
Sbjct: 355 SSFNKKEITLDLAKKIVDNY 374


>gi|322804279|emb|CBZ01829.1| DnaA DNA replication protein [Clostridium botulinum H04402 065]
          Length = 445

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 109 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILHN 168

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + +   L++DI  +   +    + FH
Sbjct: 169 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 229 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ I  ++  YI  +++ ++   E  + ++   +      I+  LA+E LK+
Sbjct: 289 EKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISIDLASEALKD 341


>gi|53802863|ref|YP_115420.1| chromosomal replication initiator protein DnaA [Methylococcus
           capsulatus str. Bath]
 gi|61212517|sp|Q602N0|DNAA_METCA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|53756624|gb|AAU90915.1| chromosomal replication initiator protein DnaA [Methylococcus
           capsulatus str. Bath]
          Length = 442

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 90/259 (34%), Gaps = 32/259 (12%)

Query: 14  DKQKNDQPKNKE----EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
            + ++  P  K     +Q+  +          + +   + + A            R    
Sbjct: 85  AQMRSANPPRKTAPARKQVPNNLNSAFIFG--NFVEGKSNQLAKAASLQVAQNVGRAYNP 142

Query: 67  VILVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILIDT------ 107
           + + G  G GK+ L +   ++                   S++ K+L    I+       
Sbjct: 143 LFIYGGVGLGKTHLMHAIGNEILRGNPAANIVYLHSERFVSDMVKALQHNAINAFKEFYR 202

Query: 108 -RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      +    + FH  N++ +    +++T   +P         L SR  
Sbjct: 203 TVDALLIDDIQFFAGKERSQEEFFHTFNTLLENKHQVVLTCDRYPKEIKGLEERLKSRFG 262

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  PD +    +++       I +  ++A +I +R+  ++   E  + ++   A
Sbjct: 263 WGLPVAIEPPDLETRVAILMSKAQQSGIDLSPEVAFFIGKRIRSNIRELEGALRRVIANA 322

Query: 224 LSRGMGITRSLAAEVLKET 242
              G  IT   A E L++ 
Sbjct: 323 QFTGRPITLEFAKEALRDL 341


>gi|148378012|ref|YP_001252553.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum A str. ATCC 3502]
 gi|153930843|ref|YP_001382411.1| chromosomal replication initiation protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935412|ref|YP_001385963.1| chromosomal replication initiation protein [Clostridium botulinum A
           str. Hall]
 gi|166201876|sp|A7FPR6|DNAA_CLOB1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166201877|sp|A5HXP7|DNAA_CLOBH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|148287496|emb|CAL81555.1| chromosomal replication initiator protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152926887|gb|ABS32387.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931326|gb|ABS36825.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum A str. Hall]
          Length = 448

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 112 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILHN 171

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + +   L++DI  +   +    + FH
Sbjct: 172 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 232 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I+  LA+E LK+
Sbjct: 292 ENLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISIDLASEALKD 344


>gi|284097517|ref|ZP_06385596.1| Chromosomal replication initiator protein dnaA [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830972|gb|EFC35003.1| Chromosomal replication initiator protein dnaA [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 451

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 97/257 (37%), Gaps = 36/257 (14%)

Query: 17  KNDQPKNKEEQ------LFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVV 67
           + D+P+   +Q      L          + ++ +V ++ + A      +   P+      
Sbjct: 98  QADKPQAAPQQTRVHRQLP-----NPKYTFENFVVGASNQFAHAASLAVAESPARSYNPF 152

Query: 68  ILVGPSGSGKSCLAN---IWSDKSRSTRFS-NIAKSLDSILIDTRKP------------- 110
            + G  G GK+ L N    +  +    R +    +   + +I++ +              
Sbjct: 153 FIYGGVGLGKTHLLNSIGNFVMQKGDLRIAYVTTEEFTNEVINSIRYDKMSELRRRYRNI 212

Query: 111 --VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI  L   +    + FH  N++++    +++++  FP         L SR +  
Sbjct: 213 DMLLIDDIQFLAGKERTQEEFFHTFNALYEARKQIVLSSDRFPKEMPSMEERLRSRFEWG 272

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  +  PD +    ++ K   +  I I   +   + + ++ ++   E  + ++      
Sbjct: 273 LIADLQQPDVETRIAILKKKSEEEGIAIGDDVIHLLAEGLKSNIRELEGALIRLGAYCTL 332

Query: 226 RGMGITRSLAAEVLKET 242
            G  IT  +A  VL++ 
Sbjct: 333 TGQAITTDMAKTVLRDL 349


>gi|261868623|ref|YP_003256545.1| chromosomal replication initiation protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413955|gb|ACX83326.1| chromosomal replication initiator protein DnaA [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 453

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWS 85
              +  ++ +   + + A  +       P       + L G +G GK+ L +     I +
Sbjct: 118 NTKLVFENFVEGKSNQLARAVAQKVADNPGEQTANPLFLYGGTGLGKTHLLHAIGNGIIA 177

Query: 86  DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---TQLF 127
           +   +      ++     ++                +   +L++DI      +    + F
Sbjct: 178 NNPNARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKTQEEFF 237

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++ +    +++T+  +P         L SR        I  PD +    +++K   
Sbjct: 238 HIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAILMKKAE 297

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  + +   +A +I Q++  ++   E  ++++  +   +G  IT     E LK+ 
Sbjct: 298 ENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPITIDFVRETLKDM 352


>gi|313157670|gb|EFR57081.1| chromosomal replication initiator protein DnaA [Alistipes sp. HGB5]
          Length = 460

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 79/237 (33%), Gaps = 27/237 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
             G++    +       A         +  + P   + + G SG GK+ +      + R 
Sbjct: 124 NPGLTFATFIEGECNRLARSAGMSVAVNPGNNPFNPLYIYGNSGLGKTHIVQAIGHEVRQ 183

Query: 91  TR--FSNIAKSLDSILIDTRKP------------------VLLEDIDLLDF---NDTQLF 127
                  +  S++      +                    ++++DI  L          F
Sbjct: 184 RHPELQVLYVSMNKFQAQFQTAYKNGEIPDFIHFYQMIDVLIIDDIQELTGKTGTQNAFF 243

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +I N +      L++T+   PV        L +R K     +++ PD +   K+I     
Sbjct: 244 NIFNHLQLAGKQLILTSDKPPVELKDIEQRLLTRFKWGLSAQLNTPDHETKLKIIRVKAQ 303

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                I   + AY+   +  ++   E  +  +   A   G  IT SLA E+LK   Q
Sbjct: 304 KLGAQISDDVVAYLADNISANVREIEGALSSLVANASFLGRKITTSLAKEILKVYVQ 360


>gi|313202491|ref|YP_004041148.1| chromosomal replication initiator protein dnaa [Paludibacter
           propionicigenes WB4]
 gi|312441807|gb|ADQ78163.1| chromosomal replication initiator protein DnaA [Paludibacter
           propionicigenes WB4]
          Length = 463

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 92/252 (36%), Gaps = 33/252 (13%)

Query: 20  QPKNKEEQLF-FSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPS-WPSRVVILVGPSG 74
            P +K  QL           + ++L+  ++ + A      I + P       + + G SG
Sbjct: 113 NPYHKP-QLPEIDPQLNPAYNFNNLIEGNSNKLARTAGISIGNEPGKNIFNPLFVYGQSG 171

Query: 75  SGKSCLANI---------------------WSDK-SRSTRFSNIAKSLDSILIDTRKPVL 112
            GK+ LAN                      +  + + + R + +   L+     T   ++
Sbjct: 172 VGKTHLANAIGVMTKQLHPEKRVLYVSANTFQIQYTDAVRSNTVNDFLN--FYQTIDVLI 229

Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI             FHI N +HQ    L++T+   P+        L +R K     +
Sbjct: 230 VDDIQEFAGKTGTQNTFFHIFNHLHQTGKQLVLTSDRSPIVMVGLEQRLLTRFKWGLSAE 289

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  PD +    ++        + I  ++  +I + +  ++   E ++  +   +    M 
Sbjct: 290 IEKPDFELRRSILQSKIYRDGLEISDEVVDFIAEHVVDNVRDLEGVLVSLLAHSTLANMP 349

Query: 230 ITRSLAAEVLKE 241
           I  +LA +V+  
Sbjct: 350 IDVALAEKVISR 361


>gi|188589439|ref|YP_001919466.1| chromosomal replication initiation protein [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251779038|ref|ZP_04821958.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|226735791|sp|B2UX43|DNAA_CLOBA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|188499720|gb|ACD52856.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243083353|gb|EES49243.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 456

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + +  ++ ++   A     +    P++    + + G  G GK+ L +         
Sbjct: 120 NPKYTFNSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 179

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   + I    +       + V   L++DI  +   +    + FH
Sbjct: 180 NTKAKVVYVSSEKFTNELINAIKDDKNEEFRKKYRNVDVLLIDDIQFIAGKERTQEEFFH 239

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N +H  +  +++++   P         L SR +   +  I +PD +    ++ K    
Sbjct: 240 TFNELHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADV 299

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +  ++  YI  +++ ++   E  + ++   +      +T  LA+E LK+
Sbjct: 300 ENLKVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREVTVDLASEALKD 352


>gi|187935721|ref|YP_001884266.1| chromosomal replication initiation protein [Clostridium botulinum B
           str. Eklund 17B]
 gi|226735792|sp|B2THB4|DNAA_CLOBB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|187723874|gb|ACD25095.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum B str. Eklund 17B]
          Length = 456

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + +  ++ ++   A     +    P++    + + G  G GK+ L +         
Sbjct: 120 NPKYTFNSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 179

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   + I    +       + V   L++DI  +   +    + FH
Sbjct: 180 NTKAKVVYVSSEKFTNELINAIKDDKNEEFRKKYRNVDVLLIDDIQFIAGKERTQEEFFH 239

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N +H  +  +++++   P         L SR +   +  I +PD +    ++ K    
Sbjct: 240 TFNELHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADV 299

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +  ++  YI  +++ ++   E  + ++   +      +T  LA+E LK+
Sbjct: 300 ENLKVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREVTVDLASEALKD 352


>gi|164686446|ref|ZP_02210474.1| hypothetical protein CLOBAR_00011 [Clostridium bartlettii DSM
           16795]
 gi|164604457|gb|EDQ97922.1| hypothetical protein CLOBAR_00011 [Clostridium bartlettii DSM
           16795]
          Length = 451

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-----D 86
               + D  ++ ++   A     +    P++    + L G  G GK+ L +        +
Sbjct: 114 NPKYTFDTFVIGNSNRFAHAACVAVAESPAKAYNPLFLYGGVGLGKTHLMHAIGHSIMKE 173

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFH 128
           ++ +      ++   + LI++ K                +L++DI  +   +    + FH
Sbjct: 174 QNDAKVVYVSSEKFTNELINSIKSDKNEEFRNKYRNVDILLIDDIQFIAGKEGTQEEFFH 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++      
Sbjct: 234 TFNALHEANKQIIISSDRPPKEIPTLEDRLRSRFEMGLIADIQPPDFETRIAILKTKAQI 293

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I I  ++  YI   ++ ++   E  + ++   +      I+  LA E LK+
Sbjct: 294 ENIDIPNEVMNYIATYIKSNIRELEGALTRVVAYSSLINKDISYDLAVEALKD 346


>gi|229542315|ref|ZP_04431375.1| chromosomal replication initiator protein DnaA [Bacillus coagulans
           36D1]
 gi|229326735|gb|EEN92410.1| chromosomal replication initiator protein DnaA [Bacillus coagulans
           36D1]
          Length = 449

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 101/274 (36%), Gaps = 48/274 (17%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRC----------------LGISRDDLLVHSAIEQAV 53
           F +P +Q +D+P+       F  P+                    + D  ++ S    A 
Sbjct: 78  FVIPQQQDSDEPE------LFPSPKKSAEKLNDTRDYQSMLIPKYTFDTFVIGSGNRFAH 131

Query: 54  RLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRF 93
               +    P++    + + G  G GK+ L +                   S+K  +   
Sbjct: 132 AASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLEHNPKAKVVYLSSEKFTNEFI 191

Query: 94  SNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTF 147
           ++I  +      +  + V   L++DI  L   +    + FH  N++H+    +++++   
Sbjct: 192 NSIRDNKGGEFRNKYRNVDILLIDDIQFLAGKESTQEEFFHTFNALHEESKQIVISSDRP 251

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P         L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ 
Sbjct: 252 PKEIPTLEERLRSRFEWGLITDITPPDLETRIAILRKKAKADGLDIPNEVMLYIANQIDT 311

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++   E  + ++   +      I   LAAE LK+
Sbjct: 312 NIRELEGALIRVVAYSSLINKDINADLAAEALKD 345


>gi|303240057|ref|ZP_07326578.1| chromosomal replication initiator protein DnaA [Acetivibrio
           cellulolyticus CD2]
 gi|302592326|gb|EFL62053.1| chromosomal replication initiator protein DnaA [Acetivibrio
           cellulolyticus CD2]
          Length = 443

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 101/265 (38%), Gaps = 35/265 (13%)

Query: 9   SFFVP-----DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWP 60
           +F VP     DK  N    N E+ L          + D  ++ ++   A      +   P
Sbjct: 78  NFVVPSQENIDKYTNQAEANNEDTLVSVL--NPKYTFDTFVIGNSNRFAHAASLAVAESP 135

Query: 61  SWPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSI 103
           +     + + G  G GK+ L +                   S+K  +   + I    +  
Sbjct: 136 AKAYNPLFIYGGVGLGKTHLMHAIGHFVLKQNPSLKVLYVSSEKFTNELINAIKDDKNEE 195

Query: 104 LIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                + +   L++DI  +   +    + FH  N++++ +  +++++   P    V L D
Sbjct: 196 FRSKYRNIDILLIDDIQFIAGKERTQEEFFHTFNALYEANKQIILSSDKSPKEI-VTLED 254

Query: 158 -LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR +   +  +  PD +    ++ K      + +  ++  +I +++  ++   E  +
Sbjct: 255 RLRSRFEWGLIADMQAPDIETRIAILRKKAQLENLDVPNEIMVFIAEKIASNIRELEGAL 314

Query: 217 DKMDNLALSRGMGITRSLAAEVLKE 241
           +++   +      IT  LA E LK+
Sbjct: 315 NRVIAYSSLTENDITVDLATEALKD 339


>gi|188584643|ref|YP_001916188.1| chromosomal replication initiator protein DnaA [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|226735829|sp|B2A2Y6|DNAA_NATTJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|179349330|gb|ACB83600.1| chromosomal replication initiator protein DnaA [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 453

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
               + D  ++ +A   A     +    P++    + + G  G GK+ L +       S 
Sbjct: 117 NPKYTFDTFVIGNANRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLSH 176

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           +         ++   +  I+  +                +L++DI  L   +    + FH
Sbjct: 177 QPNYRVVYISSEKFTNEFINAIRDNKTVNFRNKYRNVDILLVDDIQFLAGKEQTQEEFFH 236

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ D  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 237 TFNTLHENDKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQAPDLETRIAILRKKAYL 296

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ I   +  YI  +++ ++   E  + ++   +      IT+  A E LK+
Sbjct: 297 EKLDIPNDVIVYIANQIDTNIRELEGGLIRVIAYSSMANKKITKETAEEALKD 349


>gi|170764020|ref|ZP_02637629.2| chromosomal replication initiator protein DnaA [Clostridium
           perfringens B str. ATCC 3626]
 gi|170710061|gb|EDT22243.1| chromosomal replication initiator protein DnaA [Clostridium
           perfringens B str. ATCC 3626]
          Length = 342

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               +    ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 6   NPKYTFQSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQE 65

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128
                     S+K  +   + I    +    +  +    +L++DI  +   +    + FH
Sbjct: 66  NPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERTQEEFFH 125

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 126 TFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFECGLIADIQPPDFETRMAILKKKADV 185

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +  ++  YI  +++ ++   E  + ++   +      ++  LA+E LK+
Sbjct: 186 EGLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASEALKD 238


>gi|260654348|ref|ZP_05859838.1| DNA replication initiator protein, ATPase [Jonquetella anthropi
           E3_33 E1]
 gi|260630981|gb|EEX49175.1| DNA replication initiator protein, ATPase [Jonquetella anthropi
           E3_33 E1]
          Length = 443

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 86/253 (33%), Gaps = 31/253 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72
           Q+  +PKN                    +V  +   A     +    P      + + G 
Sbjct: 96  QRVAEPKNPS-----PTGLNPNYKFSSFVVGRSNRLAHAASLAVADNPGSAYSPLFIWGG 150

Query: 73  SGSGKSCLANIWSDKSRST-----------------RFSNIAKSLDSILIDTRK---PVL 112
            G GK+ L +     + +                    + I  +  +      +    +L
Sbjct: 151 VGLGKTHLMHAIGHHALAQNPRLRVTYVSSEKFTNELITAIKNNKTAEFRSKYRHMDLLL 210

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  +   +    + FH  N++H     +++++   P         L SR +   V  
Sbjct: 211 IDDIQFIAGKESTQEEFFHTFNTLHDNKKQIVLSSDRPPKEISDIEERLVSRFEWGLVTD 270

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  PD +    ++ K    R   +  ++AAY+ Q +  ++   E  ++++   A      
Sbjct: 271 IQQPDYETRIAILKKKAESRNYPLPDEVAAYLAQNIPSNIRELEGSLNRVIACAELSSEQ 330

Query: 230 ITRSLAAEVLKET 242
           IT   A E LK+ 
Sbjct: 331 ITVERAVEWLKDM 343


>gi|229829518|ref|ZP_04455587.1| hypothetical protein GCWU000342_01610 [Shuttleworthia satelles DSM
           14600]
 gi|229791949|gb|EEP28063.1| hypothetical protein GCWU000342_01610 [Shuttleworthia satelles DSM
           14600]
          Length = 456

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 95/277 (34%), Gaps = 43/277 (15%)

Query: 10  FFVPDKQKNDQPKNKEEQ----------LFFSFPRCLGISRDDLLVHSAIEQA----VRL 55
           F +P +  N +P +   Q          L          + D  +V +    A    + +
Sbjct: 84  FILPGQATNLKPSDVVSQGHRLADRENFLSSHL--NPRYTFDTFVVGANNRFAQTASLAV 141

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLANIWS------DKSRSTRFSNIAKSLDSILIDTRK 109
            +S P      + + G  G GK+ L +           S+   +      L+ ++   R 
Sbjct: 142 AES-PGQAYNPLFIYGGPGLGKTHLMHAIGNFILQDSPSKKVLYVTSEDFLNEVIESIRN 200

Query: 110 -----------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPV 149
                             +L++DI  +   +    + FH  N++H     +++T+   P 
Sbjct: 201 NSSGSMSRFRDKYRTVDILLIDDIQFIIGKESTQEEFFHTFNALHSAGKQIVLTSDRPPK 260

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   + SR +   +  +  PD +    ++ +     +  +  ++  YI   ++ ++
Sbjct: 261 EMETLDTRIRSRFEWGLMADVGSPDYETRMAILRRRCEMDRFSLPDEILDYIASNIKSNI 320

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              E  ++K+   +      IT  +A+  L+     D
Sbjct: 321 RELEGALNKLIAYSNLEKTTITMEIASRELQNIISPD 357


>gi|296392441|ref|YP_003657325.1| chromosomal replication initiator protein DnaA [Segniliparus
           rotundus DSM 44985]
 gi|296179588|gb|ADG96494.1| chromosomal replication initiator protein DnaA [Segniliparus
           rotundus DSM 44985]
          Length = 487

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + +  ++ ++   A      +   P+     + + G SG GK+ L +     ++  
Sbjct: 148 NARYTFETFVIGASNRFAHAATFAVSEAPARAYNPLFIWGDSGLGKTHLLHAAGHYTQRL 207

Query: 92  --RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
              F     S +    D    +                  L++DI  +   +    + FH
Sbjct: 208 FSGFRVKYVSTEEFTNDFINSLRDDRRVAFKQRYRDVDLLLVDDIQFIAGKEGIQEEFFH 267

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++T+   P         L +R +   +  +  P+ +    ++ K    
Sbjct: 268 TFNTLHNSNKQIIITSDRPPKKLAALEDRLRTRFEWGLITDVQPPELETRIAILRKKANI 327

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +   +A  I  R+ER++   E  + ++   A      +T +LA  VL++ 
Sbjct: 328 DGLEVPDDVAELIASRIERNIRELEGALIRVTAFASLNHQKLTSALAEMVLRDL 381


>gi|149194732|ref|ZP_01871827.1| chromosomal replication initiation protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135155|gb|EDM23636.1| chromosomal replication initiation protein [Caminibacter
           mediatlanticus TB-2]
          Length = 435

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 26/231 (11%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRSTR 92
              + +  +V  + + A     S    P      + + G  G GK+ L     +     R
Sbjct: 100 PEYTFESFIVGPSNQFAYSAAKSVAENPGKNYNPLFIYGGVGLGKTHLIQAIGN-YLKNR 158

Query: 93  FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHIIN 131
            + I  + +  + + R+ V                  L++D+      +    + FH  N
Sbjct: 159 LNVIYVTSEQFMNEFRENVRNQTMDRFHEKYRSCDVLLIDDVQFFAGKEQTQEEFFHTFN 218

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
            ++     + +TA   P      +  L SR +A  +  I  P+ +   ++I K      I
Sbjct: 219 ELYNQKKQICLTADRPPKKLQDLVDRLRSRFEAGLIADIQPPELETKIEIIKKKCELNGI 278

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKE 241
           ++   +  +I  +++ ++   E ++ K++ +A L     IT   A + LKE
Sbjct: 279 YLPDDVIEFIATKLDDNIREIEGMIVKLNAMAKLLGVSDITIDFAKQTLKE 329


>gi|293391841|ref|ZP_06636175.1| chromosomal replication initiator protein DnaA [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952375|gb|EFE02494.1| chromosomal replication initiator protein DnaA [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 453

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWS 85
              +  ++ +   + + A  +       P       + L G +G GK+ L +     I +
Sbjct: 118 NTKLVFENFVEGKSNQLARAVAQKVADNPGEQTANPLFLYGGTGLGKTHLLHAIGNGIIA 177

Query: 86  DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---TQLF 127
           +   +      ++     ++                +   +L++DI      +    + F
Sbjct: 178 NNPNARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKTQEEFF 237

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++ +    +++T+  +P         L SR        I  PD +    +++K   
Sbjct: 238 HIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAILMKKAE 297

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  + +   +A +I Q++  ++   E  ++++  +   +G  IT     E LK+ 
Sbjct: 298 ENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPITIDFVRETLKDM 352


>gi|320095107|ref|ZP_08026816.1| DNA-directed DNA replication initiator protein [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319977974|gb|EFW09608.1| DNA-directed DNA replication initiator protein [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 483

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 80/238 (33%), Gaps = 31/238 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + +  ++  +   A      +   P      + + G SG GK+ L +     +   
Sbjct: 139 NPKYTFETFVIGPSNRFAHAAALAVSETPGTSFNPLFIYGDSGLGKTHLLHAIGHYALSL 198

Query: 89  -------------------RSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123
                               + R +    S         + +   L++DI  +   +   
Sbjct: 199 LPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQTV 258

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
              FH  N++++ +  +++T+   P         + SR  +  +V +  PD +    ++ 
Sbjct: 259 EGFFHTFNALYENNKQIVLTSDVPPAQLNGFEDRMRSRFASGLLVDVQPPDLETRIAILQ 318

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           K      + +   +  YI  R+  ++   E  + ++   A      I   LA  +LK+
Sbjct: 319 KKATTDSLEVTPDVLEYIASRISSNIRELEGALLRVIAFANLSKERIDLPLAEMLLKD 376


>gi|261417501|ref|YP_003251183.1| chromosomal replication initiation protein [Geobacillus sp.
           Y412MC61]
 gi|319765158|ref|YP_004130659.1| chromosomal replication initiator protein DnaA [Geobacillus sp.
           Y412MC52]
 gi|261373958|gb|ACX76701.1| chromosomal replication initiator protein DnaA [Geobacillus sp.
           Y412MC61]
 gi|317110024|gb|ADU92516.1| chromosomal replication initiator protein DnaA [Geobacillus sp.
           Y412MC52]
          Length = 450

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 37/269 (13%)

Query: 10  FFVPDKQK--------NDQPKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDS 58
           F +P  Q         + + + K  +    FP        + D  ++ S    A     +
Sbjct: 78  FIIPPNQDDEELEFQSSKKKQRKPYEETNDFPQSMLNPKYTFDTFVIGSGNRFAHAASLA 137

Query: 59  WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98
               P++    + + G  G GK+ L +                   S+K  +   + I  
Sbjct: 138 VAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRD 197

Query: 99  SLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +      +  + V   L++DI  L   +    + FH  N++H+    +++++   P    
Sbjct: 198 NRPDDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIP 257

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR +   +  I+ PD +    ++ K        I  ++  YI  +++ ++   
Sbjct: 258 TLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIREL 317

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           E  + ++   +      IT  LAAE LK+
Sbjct: 318 EGALIRVVAYSSLINKEITADLAAEALKD 346


>gi|15603026|ref|NP_246098.1| chromosomal replication initiation protein [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|14194669|sp|Q9CLQ4|DNAA_PASMU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|12721509|gb|AAK03245.1| DnaA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 451

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 90/235 (38%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP----SRVVILVGPSGSGKSCLAN-----IWS 85
                 ++ +   + + A  +       P    S  + L G +G GK+ L +     I S
Sbjct: 116 NPKHVFENFVEGKSNQLARAVAQKVADNPGEPSSNPLFLYGGTGLGKTHLLHAIGNGILS 175

Query: 86  DKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127
             + +      A +    +++  +                +L++DI      +    + F
Sbjct: 176 RNTNARVLYIHANNFMQQMVNAVRDNKMDEFKKFYRSLDALLVDDIQFFAEKEKTQEEFF 235

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++      +++T+  +P         L SR        I  P+ +    +++K   
Sbjct: 236 HIFNNLFDTGRQIILTSDRYPKEIEKLEERLKSRFGWGLTTAIEPPELETRVAILLKKAE 295

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ I++ +++A +I Q++  ++   E  ++++   A   G  IT     E LK+ 
Sbjct: 296 EKNIYLPEEVAFFIGQKLRTNVRDLEGALNRVSANAEFMGAAITIDFVRETLKDM 350


>gi|291297539|ref|YP_003508817.1| chromosomal replication initiator protein DnaA [Stackebrandtia
           nassauensis DSM 44728]
 gi|290566759|gb|ADD39724.1| chromosomal replication initiator protein DnaA [Stackebrandtia
           nassauensis DSM 44728]
          Length = 566

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 87/250 (34%), Gaps = 26/250 (10%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSG 74
              PK    Q   +       S D  ++ S+   A     +    P++    + + G SG
Sbjct: 210 RSDPKPVPPQPATATRLNPKYSFDTFVIGSSNRFAHAAAVAVAESPAKAYNPLFIYGDSG 269

Query: 75  SGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPV------------------LLE 114
            GK+ L +      ++     S    S +    D    +                  L++
Sbjct: 270 LGKTHLLHAIGHYAQNLGNAKSVRYVSTEEFTNDFINSLRDDKRQAFQRRYRDVDILLID 329

Query: 115 DI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DI   +  +    + FH  N++H  +  L++T+   P         L +R +   +  I 
Sbjct: 330 DIQFLERAERTQEEFFHTFNTLHNANKQLVITSDRSPKQLSTLEDRLRTRFEWGLLADIQ 389

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            PD +    ++ K  A  ++        +I  R+  S+   E  + ++   A        
Sbjct: 390 PPDLETRIAILQKKAAQERLDAPPDALEFIASRINHSIRELEGALIRVTAYASLTNKPAD 449

Query: 232 RSLAAEVLKE 241
            +LA EVL++
Sbjct: 450 LALAQEVLRD 459


>gi|289523933|ref|ZP_06440787.1| DNA replication initiator protein, ATPase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502589|gb|EFD23753.1| DNA replication initiator protein, ATPase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 446

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 85/253 (33%), Gaps = 28/253 (11%)

Query: 17  KNDQPKNKEEQLFFSFP--RCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVG 71
           +  + +N  +Q     P         D  +V  +   A      +   P      + + G
Sbjct: 88  EQKRAENALKQPPPPNPDGLNPNYYFDTFVVGKSNRLAHAASLAVAESPGVAYNPLFIWG 147

Query: 72  PSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTR---------------KPV 111
             G GK+ L +            +      ++   + LI                    +
Sbjct: 148 GVGLGKTHLMHAIGHYVLEHLPGARVVYASSEKFTNELISAIQNNKTQEFKAKFRNVDIL 207

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI  L   +    + FH  NS+H     +++++   P         L SR +   V 
Sbjct: 208 LIDDIQFLANKESTQEEFFHTFNSLHNAKRQIVLSSDRPPKEIQSIEQRLVSRFEWGLVT 267

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            I  PD +    ++ K    R   I + +  ++ Q +  ++   E  ++++   +     
Sbjct: 268 DIQPPDLETRIAILQKKAEFRGYDIPEDVVYFLAQNIPSNIRELEGALNRIIACSQLNME 327

Query: 229 GITRSLAAEVLKE 241
            IT   A E LK+
Sbjct: 328 PITVENATEWLKD 340


>gi|187777367|ref|ZP_02993840.1| hypothetical protein CLOSPO_00923 [Clostridium sporogenes ATCC
           15579]
 gi|187774295|gb|EDU38097.1| hypothetical protein CLOSPO_00923 [Clostridium sporogenes ATCC
           15579]
          Length = 448

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 112 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILNN 171

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + +   L++DI  +   +    + FH
Sbjct: 172 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 232 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ I  ++  YI  +++ ++   E  + ++   +      I+  LA+E LK+
Sbjct: 292 EKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 344


>gi|170760502|ref|YP_001785336.1| chromosomal replication initiation protein [Clostridium botulinum
           A3 str. Loch Maree]
 gi|226735794|sp|B1L1K6|DNAA_CLOBM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|169407491|gb|ACA55902.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 445

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 109 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILHN 168

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + +   L++DI  +   +    + FH
Sbjct: 169 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 229 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ I  ++  YI  +++ ++   E  + ++   +      I+  LA+E LK+
Sbjct: 289 EKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 341


>gi|153940298|ref|YP_001389370.1| chromosomal replication initiation protein [Clostridium botulinum F
           str. Langeland]
 gi|168181116|ref|ZP_02615780.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum NCTC 2916]
 gi|170756151|ref|YP_001779627.1| chromosomal replication initiation protein [Clostridium botulinum
           B1 str. Okra]
 gi|226947223|ref|YP_002802314.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum A2 str. Kyoto]
 gi|166201878|sp|A7G9B0|DNAA_CLOBL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735793|sp|B1IDU3|DNAA_CLOBK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777894|sp|C1FPH3|DNAA_CLOBJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|152936194|gb|ABS41692.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum F str. Langeland]
 gi|169121363|gb|ACA45199.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum B1 str. Okra]
 gi|182668171|gb|EDT80150.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum NCTC 2916]
 gi|226843194|gb|ACO85860.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum A2 str. Kyoto]
 gi|295317477|gb|ADF97854.1| chromosomal replication initiator protein DnaA [Clostridium
           botulinum F str. 230613]
          Length = 445

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 109 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILHN 168

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + +   L++DI  +   +    + FH
Sbjct: 169 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 229 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ I  ++  YI  +++ ++   E  + ++   +      I+  LA+E LK+
Sbjct: 289 EKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 341


>gi|28376975|ref|NP_783867.1| chromosomal replication initiation protein DnaA [Lactobacillus
           plantarum WCFS1]
 gi|254555170|ref|YP_003061587.1| chromosomal replication initiation protein DnaA [Lactobacillus
           plantarum JDM1]
 gi|300769106|ref|ZP_07078995.1| DNA-directed DNA replication initiator protein [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179192|ref|YP_003923320.1| chromosomal replication initiation protein DnaA [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38257539|sp|Q890K8|DNAA_LACPL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|28269806|emb|CAD62703.1| chromosomal replication initiation protein DnaA [Lactobacillus
           plantarum WCFS1]
 gi|254044097|gb|ACT60890.1| chromosomal replication initiation protein DnaA [Lactobacillus
           plantarum JDM1]
 gi|300493346|gb|EFK28525.1| DNA-directed DNA replication initiator protein [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308044683|gb|ADN97226.1| chromosomal replication initiation protein DnaA [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 455

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 28/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  ++    + A      +   P      +   G  G GK+ L +         
Sbjct: 120 NPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLGKTHLMHAIGNKLLET 179

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128
                     S+   +   + I         +  +    +L++DI      +    + FH
Sbjct: 180 DPTSNIKYVTSESFTNELINAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFH 239

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++++ D  +++T+   P      L D L SR K    V I+ PD +    ++     
Sbjct: 240 TFNALYEDDKQIVLTSDRLPNEIP-QLQDRLVSRFKWGLSVDITPPDLETRIAILRNKAD 298

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
              I I     +YI  +++ ++   E  + ++   +      IT SL A+ LK   
Sbjct: 299 LEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYSRLNNSPITTSLVADALKSLH 354


>gi|315286682|ref|ZP_07872175.1| chromosomal replication initiator protein DnaA [Listeria ivanovii
           FSL F6-596]
 gi|313630903|gb|EFR98594.1| chromosomal replication initiator protein DnaA [Listeria ivanovii
           FSL F6-596]
          Length = 420

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      IT  LAAE LK+
Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343


>gi|289433374|ref|YP_003463246.1| chromosomal replication initiator protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289169618|emb|CBH26152.1| chromosomal replication initiator protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 451

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      IT  LAAE LK+
Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343


>gi|258611656|ref|ZP_05241189.2| chromosomal replication initiator protein dnaA [Listeria
           monocytogenes FSL R2-503]
 gi|258605133|gb|EEW17741.1| chromosomal replication initiator protein dnaA [Listeria
           monocytogenes FSL R2-503]
          Length = 433

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 93  NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 152

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 153 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 212

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 213 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 272

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      IT  LAAE LK+
Sbjct: 273 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 325


>gi|226222640|ref|YP_002756747.1| Chromosomal replication initiation protein DnaA [Listeria
           monocytogenes Clip81459]
 gi|259645254|sp|C1L2Z8|DNAA_LISMC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|225875102|emb|CAS03790.1| Chromosomal replication initiation protein DnaA [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 451

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      IT  LAAE LK+
Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343


>gi|224503076|ref|ZP_03671383.1| chromosomal replication initiation protein [Listeria monocytogenes
           FSL R2-561]
          Length = 443

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      IT  LAAE LK+
Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343


>gi|16799080|ref|NP_469348.1| chromosomal replication initiation protein [Listeria innocua
           Clip11262]
 gi|116871423|ref|YP_848204.1| chromosomal replication initiation protein [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|21362477|sp|Q92FV2|DNAA_LISIN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123460548|sp|A0AEI7|DNAA_LISW6 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|16412422|emb|CAC95234.1| Chromosomal replication initiation protein DnaA [Listeria innocua
           Clip11262]
 gi|116740301|emb|CAK19419.1| chromosomal replication initiation protein [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|313621673|gb|EFR92458.1| chromosomal replication initiator protein DnaA [Listeria innocua
           FSL S4-378]
 gi|313625799|gb|EFR95415.1| chromosomal replication initiator protein DnaA [Listeria innocua
           FSL J1-023]
          Length = 451

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      IT  LAAE LK+
Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343


>gi|16802049|ref|NP_463534.1| chromosomal replication initiation protein [Listeria monocytogenes
           EGD-e]
 gi|46906225|ref|YP_012614.1| chromosomal replication initiation protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|217965934|ref|YP_002351612.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes HCC23]
 gi|224498306|ref|ZP_03666655.1| chromosomal replication initiation protein [Listeria monocytogenes
           Finland 1988]
 gi|254824779|ref|ZP_05229780.1| chromosomal replication initiation protein DnaA [Listeria
           monocytogenes FSL J1-194]
 gi|254827425|ref|ZP_05232112.1| chromosomal replication initiation protein DnaA [Listeria
           monocytogenes FSL N3-165]
 gi|254830707|ref|ZP_05235362.1| chromosomal replication initiation protein [Listeria monocytogenes
           10403S]
 gi|254899685|ref|ZP_05259609.1| chromosomal replication initiation protein [Listeria monocytogenes
           J0161]
 gi|254913112|ref|ZP_05263124.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes J2818]
 gi|254930868|ref|ZP_05264227.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes HPB2262]
 gi|254937493|ref|ZP_05269190.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes F6900]
 gi|254991923|ref|ZP_05274113.1| chromosomal replication initiation protein [Listeria monocytogenes
           FSL J2-064]
 gi|255026750|ref|ZP_05298736.1| chromosomal replication initiation protein [Listeria monocytogenes
           FSL J2-003]
 gi|255028897|ref|ZP_05300848.1| chromosomal replication initiation protein [Listeria monocytogenes
           LO28]
 gi|255520069|ref|ZP_05387306.1| chromosomal replication initiation protein [Listeria monocytogenes
           FSL J1-175]
 gi|284803265|ref|YP_003415130.1| chromosomal replication initiation protein [Listeria monocytogenes
           08-5578]
 gi|284996406|ref|YP_003418174.1| chromosomal replication initiation protein [Listeria monocytogenes
           08-5923]
 gi|290892037|ref|ZP_06555034.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes FSL J2-071]
 gi|300763385|ref|ZP_07073383.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes FSL N1-017]
 gi|315273163|ref|ZP_07869210.1| chromosomal replication initiator protein DnaA [Listeria marthii
           FSL S4-120]
 gi|21362468|sp|Q8YAW2|DNAA_LISMO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61212634|sp|Q725H0|DNAA_LISMF RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777905|sp|B8DAQ9|DNAA_LISMH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|16409360|emb|CAC98216.1| Chromosomal replication initiation protein DnaA [Listeria
           monocytogenes EGD-e]
 gi|46879489|gb|AAT02791.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|217335204|gb|ACK40998.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes HCC23]
 gi|258599803|gb|EEW13128.1| chromosomal replication initiation protein DnaA [Listeria
           monocytogenes FSL N3-165]
 gi|258610095|gb|EEW22703.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes F6900]
 gi|284058827|gb|ADB69768.1| chromosomal replication initiation protein [Listeria monocytogenes
           08-5578]
 gi|284061873|gb|ADB72812.1| chromosomal replication initiation protein [Listeria monocytogenes
           08-5923]
 gi|290558631|gb|EFD92148.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes FSL J2-071]
 gi|293582413|gb|EFF94445.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes HPB2262]
 gi|293591114|gb|EFF99448.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes J2818]
 gi|293594018|gb|EFG01779.1| chromosomal replication initiation protein DnaA [Listeria
           monocytogenes FSL J1-194]
 gi|300515662|gb|EFK42711.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes FSL N1-017]
 gi|307569524|emb|CAR82703.1| chromosomal replication initiator protein [Listeria monocytogenes
           L99]
 gi|313616214|gb|EFR89292.1| chromosomal replication initiator protein DnaA [Listeria marthii
           FSL S4-120]
 gi|328468322|gb|EGF39328.1| chromosomal replication initiation protein [Listeria monocytogenes
           1816]
 gi|332310334|gb|EGJ23429.1| Chromosomal replication initiator protein dnaA [Listeria
           monocytogenes str. Scott A]
          Length = 451

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      IT  LAAE LK+
Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343


>gi|47093227|ref|ZP_00231000.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes str. 4b H7858]
 gi|47018421|gb|EAL09181.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes str. 4b H7858]
          Length = 343

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 93  NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 152

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 153 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 212

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 213 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 272

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      IT  LAAE LK+
Sbjct: 273 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 325


>gi|56418536|ref|YP_145854.1| chromosomal replication initiation protein [Geobacillus
           kaustophilus HTA426]
 gi|297528377|ref|YP_003669652.1| chromosomal replication initiator protein DnaA [Geobacillus sp.
           C56-T3]
 gi|61212478|sp|Q5L3Z2|DNAA_GEOKA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56378378|dbj|BAD74286.1| chromosome replication initiator protein [Geobacillus kaustophilus
           HTA426]
 gi|297251629|gb|ADI25075.1| chromosomal replication initiator protein DnaA [Geobacillus sp.
           C56-T3]
          Length = 450

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 37/269 (13%)

Query: 10  FFVPDKQK--------NDQPKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDS 58
           F +P  Q         + + + K  +    FP        + D  ++ S    A     +
Sbjct: 78  FIIPPNQDDEELEFQSSKKKQRKPYEETNDFPQSMLNPKYTFDTFVIGSGNRFAHAASLA 137

Query: 59  WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98
               P++    + + G  G GK+ L +                   S+K  +   + I  
Sbjct: 138 VAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRD 197

Query: 99  SLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +      +  + V   L++DI  L   +    + FH  N++H+    +++++   P    
Sbjct: 198 NRPDDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIP 257

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR +   +  I+ PD +    ++ K        I  ++  YI  +++ ++   
Sbjct: 258 TLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIREL 317

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           E  + ++   +      IT  LAAE LK+
Sbjct: 318 EGALIRVVAYSSLINKEITADLAAEALKD 346


>gi|226309588|ref|YP_002769482.1| chromosomal replication initiation protein [Brevibacillus brevis
           NBRC 100599]
 gi|226092536|dbj|BAH40978.1| chromosomal replication initiator protein DnaA [Brevibacillus
           brevis NBRC 100599]
          Length = 453

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 96/256 (37%), Gaps = 28/256 (10%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68
           VP  + ++ P   ++Q           + D  ++ S    A     +    P++    + 
Sbjct: 95  VPRVKMSEPPTVADDQPPSIL--NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLF 152

Query: 69  LVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK-------------- 109
           + G  G GK+ L +     +      +      ++   +  I++ +              
Sbjct: 153 IYGGVGLGKTHLMHAIGHYVIQHNPSAKVVYLSSEKFTNEFINSIRDNKAVEFRNKYRSV 212

Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI  L   +    + FH  N++H+    +++++   P         L SR +  
Sbjct: 213 DVLLIDDIQFLAGKESTQEEFFHTFNALHEESKQIIISSDRPPKEIPTLEDRLRSRFEWG 272

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I  PD +    ++ K      + I  ++ AYI  +++ ++   E  + ++   +  
Sbjct: 273 LITDIQPPDLETRIAILRKKAKAENLDIPNEVMAYIANQIDSNIRELEGALIRVVAYSSL 332

Query: 226 RGMGITRSLAAEVLKE 241
               I   LAAE LK+
Sbjct: 333 INRDIDTQLAAEALKD 348


>gi|317509427|ref|ZP_07967045.1| chromosomal replication initiator protein DnaA [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252256|gb|EFV11708.1| chromosomal replication initiator protein DnaA [Segniliparus
           rugosus ATCC BAA-974]
          Length = 500

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 89/257 (34%), Gaps = 33/257 (12%)

Query: 19  DQPKNKEEQLFFSFPR-------CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVI 68
              +    QL    P            + D  ++ ++   A      +   P+     + 
Sbjct: 138 AAEEQAPPQLSVVAPATDTTTSLNARYTFDTFVIGASNRFAHAATFAVSEAPARAYNPLF 197

Query: 69  LVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPV--------------- 111
           + G SG GK+ L +     ++     F     S +    D    +               
Sbjct: 198 IWGDSGLGKTHLLHAAGHYTQRLFSGFRVKYVSTEEFTNDFINSLRDDRRVAFKQRYRDV 257

Query: 112 ---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
              L++DI  +   +    + FH  N++H  +  +++T+   P         L +R +  
Sbjct: 258 DLLLVDDIQFIAGKEGIQEEFFHTFNTLHNSNKQIVITSDRPPKKLAALEDRLRTRFEWG 317

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  +  P+ +    ++ K      + +   +A  I  R+ER++   E  + ++   A  
Sbjct: 318 LITDVQPPELETRIAILRKKANIDGLDVPDDVAELIASRIERNIRELEGALIRVTAFASL 377

Query: 226 RGMGITRSLAAEVLKET 242
               +T +LA  VL++ 
Sbjct: 378 NHQKLTAALAEMVLRDL 394


>gi|291548768|emb|CBL25030.1| chromosomal replication initiator protein DnaA [Ruminococcus
           torques L2-14]
          Length = 456

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 35/247 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V S    A      +   P      + L G  G GK+ L +     I   
Sbjct: 111 NPKYTFDTFVVGSNNNFAHAASLAVAESPGEIYNPLFLYGGVGLGKTHLMHSVAHYILEH 170

Query: 87  KSRSTRFSNIAKSLDSILIDT---------------------RKPVLLEDIDLLDFND-- 123
                     +++  + LID                         +L++DI  +   +  
Sbjct: 171 DPSKKVLYVTSETFTNELIDALKVGKNGNELAMTTFREKYRNNDVLLIDDIQFIIGKEST 230

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N +H     +++++   P         L +R +   +  IS PD +    ++
Sbjct: 231 QEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPDYETRMAIL 290

Query: 183 VKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            K      +    I  ++  YI   ++ ++   E  ++K+  L+      I   LAAE L
Sbjct: 291 RKKEELDGLEKYHIPDEVMQYIANNIKSNIRELEGSLNKLIALSNLENKPIDIPLAAEAL 350

Query: 240 KETQQCD 246
           K+    D
Sbjct: 351 KDMISPD 357


>gi|224372071|ref|YP_002606443.1| chromosomal replication initiator protein DnaA [Nautilia
           profundicola AmH]
 gi|254777909|sp|B9L735|DNAA_NAUPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|223588880|gb|ACM92616.1| chromosomal replication initiator protein DnaA [Nautilia
           profundicola AmH]
          Length = 436

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 24/230 (10%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-------- 84
              + +  +V  + + A     S    P      + + G  G GK+ L            
Sbjct: 101 PEYTFESFIVGPSNQFAYTAAKSVAENPGKNYNPLFIYGGVGLGKTHLLQAIGNYLKSSL 160

Query: 85  ------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIINS 132
                 S++  +    NI         +  +    +L++D+      +    + FH  N 
Sbjct: 161 NVLYVTSEQFMNEFTENIRMKTPERFHEKYRNCDVLLIDDVQFFAGKERTQEEFFHTFNE 220

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           ++     + +TA   P      +  L SR +A  +V I  P+ +   ++I K      I+
Sbjct: 221 LYNQKKQICLTADRPPKKLYDLVDRLRSRFEAGLIVDIQPPELETKIEIIRKKCELNGIY 280

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKE 241
           + +++  YI  +++ ++   E ++ K++ ++   G   IT   A + LKE
Sbjct: 281 LPEEIIEYIATKLDSNIREIEGMITKINAMSKILGISEITLDFAKQALKE 330


>gi|255527586|ref|ZP_05394450.1| chromosomal replication initiator protein DnaA [Clostridium
           carboxidivorans P7]
 gi|296186784|ref|ZP_06855185.1| chromosomal replication initiator protein DnaA [Clostridium
           carboxidivorans P7]
 gi|255508719|gb|EET85095.1| chromosomal replication initiator protein DnaA [Clostridium
           carboxidivorans P7]
 gi|296048498|gb|EFG87931.1| chromosomal replication initiator protein DnaA [Clostridium
           carboxidivorans P7]
          Length = 450

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A     +    P++    + + G  G GK+ L +         
Sbjct: 114 NPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILEN 173

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +    +  + +   L++DI  +   +    + FH
Sbjct: 174 NPSSKVVYVSSEKFTNELINSIKDDKNVDFRNKYRNIDVLLIDDIQFIAGKERTQEEFFH 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 234 TFNALHDATKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 293

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I+  LAAE LK+
Sbjct: 294 ENLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLAAEALKD 346


>gi|150014893|ref|YP_001307147.1| chromosomal replication initiation protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|189044634|sp|A6LPB1|DNAA_CLOB8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|149901358|gb|ABR32191.1| chromosomal replication initiator protein DnaA [Clostridium
           beijerinckii NCIMB 8052]
          Length = 449

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + +  ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 113 NPKYTFNSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILDG 172

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   + I    +    +  + V   L++DI  +   +    + FH
Sbjct: 173 NPNAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRNVDILLIDDIQFIAGKERTQEEFFH 232

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L SR +   +  I +PD +    ++ K    
Sbjct: 233 TFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADV 292

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +  ++  YI  +++ ++   E  + ++   +      +T  LA E LK+
Sbjct: 293 ENLNVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREVTVDLATEALKD 345


>gi|229917455|ref|YP_002886101.1| chromosomal replication initiator protein DnaA [Exiguobacterium sp.
           AT1b]
 gi|259645250|sp|C4KZZ3|DNAA_EXISA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|229468884|gb|ACQ70656.1| chromosomal replication initiator protein DnaA [Exiguobacterium sp.
           AT1b]
          Length = 459

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 94/263 (35%), Gaps = 37/263 (14%)

Query: 5   KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS 64
            ++    +P K++ D       QL            +  ++ S    A     +    P+
Sbjct: 105 TKEQPVLLPSKEEGDLG-----QL------NDKYIFETFVIGSGNRFAHAASLAVAEAPA 153

Query: 65  RV---VILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRK------- 109
           R    + + G  G GK+ L +         K  +      ++   +  I++ +       
Sbjct: 154 RAYNPLFIYGGVGLGKTHLMHAIGHYVKGQKPGARIAYVSSEKFTNEFINSIRDNKTGEF 213

Query: 110 --------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                    +L++DI  L   +    + FH  N++H     +++++   P         L
Sbjct: 214 RNRYRNIDVLLIDDIQFLAGKEQTQEEFFHTFNALHNDQKQIVISSDRPPKEIPTLEDRL 273

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E  + +
Sbjct: 274 RSRFEWGLITDITPPDLETRIAILRKKATAEGLDISNEVMLYIANQIDTNIRELEGALTR 333

Query: 219 MDNLALSRGMGITRSLAAEVLKE 241
           +   A   G  I   +AAE L  
Sbjct: 334 VVAYAKLVGRPIDPDVAAEALHN 356


>gi|163755431|ref|ZP_02162551.1| chromosomal replication initiator protein [Kordia algicida OT-1]
 gi|161324851|gb|EDP96180.1| chromosomal replication initiator protein [Kordia algicida OT-1]
          Length = 475

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 91/259 (35%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + D+ L   +   A     +  + P      
Sbjct: 125 FIIPGIRNV----KIESQL------NPNYNFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ +A+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHIAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNTRNDFIHFY 234

Query: 109 KPV---LLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + +   +++D+             FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QLIDVLIIDDVQFFSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++        + +   +  Y+ + ++ ++   E  +  +   
Sbjct: 295 KWGLSAELQTPDFETRVSIVKNKLYRDGVEMPNDIVEYVAKNIKSNVRELEGAIISLIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           +      +T  LA +V+++
Sbjct: 355 SSFNKKEVTIELAKQVVEK 373


>gi|302384445|ref|YP_003820267.1| chromosomal replication initiator protein DnaA [Clostridium
           saccharolyticum WM1]
 gi|302195073|gb|ADL02644.1| chromosomal replication initiator protein DnaA [Clostridium
           saccharolyticum WM1]
          Length = 458

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 84/236 (35%), Gaps = 29/236 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V +    A      +   P      + + G  G GK+ L +     I  +
Sbjct: 119 NPKYTFDTFVVGANNNLAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMHSIGHFILKN 178

Query: 87  KSRSTRFSNIAKSLDSILIDT------------------RKPVLLEDIDLLDFND---TQ 125
              +      ++   + LID                      +L++DI  +   +    +
Sbjct: 179 NPAAKVLYVTSEKFTNELIDAIRNKNNFSPTEFREKYRNNDVLLIDDIQFIIGKESTQEE 238

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++++    +++++   P         L SR +    V I  PD +    ++ K 
Sbjct: 239 FFHTFNALYEAKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK 298

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                  ID ++  YI   ++ ++   E  + K+  L+      IT  LA E LK+
Sbjct: 299 EEMEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLDNKEITVELAEEALKD 354


>gi|291543411|emb|CBL16520.1| chromosomal replication initiator protein DnaA [Ruminococcus sp.
           18P13]
          Length = 455

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 91/238 (38%), Gaps = 37/238 (15%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-------VILVGPSGSGKSCLANIWSDKSRS 90
            + D  +V  + E A     +               + + GPSG GK+ L    +++ R 
Sbjct: 114 YTFDTFIVGKSNEFAYAACTAVAKHDRNKASDTYNPLFIYGPSGLGKTHLMTAIANEMRR 173

Query: 91  T-----RFSNIAKSLDSILIDT----------------RKPVLLEDIDLLDFND---TQL 126
                       ++  + LI+                    +L++D+  +   D    + 
Sbjct: 174 NDPNLNIVYVTGETFANELIEAIQKKQDTSLFHDKYRNADVLLVDDVQFIAGKDSTQEEF 233

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N +H     +++T+   P    +    + SR ++  +  IS PD +    +I +  
Sbjct: 234 FHTFNKLHSEGKQIVLTSDRPPKDIKILEDRIRSRFESGLIADISTPDFETRIAIIRRKA 293

Query: 187 ADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               + +  ++A +I  R++   R L  A K +  + +LA   G   + ++A  V+++
Sbjct: 294 ELLDLNLPDEVAEFIANRLKTNIRQLEGAVKKLKALKHLA---GSQPSIAMAQSVIRD 348


>gi|261854631|ref|YP_003261914.1| chromosomal replication initiator protein DnaA [Halothiobacillus
           neapolitanus c2]
 gi|261835100|gb|ACX94867.1| chromosomal replication initiator protein DnaA [Halothiobacillus
           neapolitanus c2]
          Length = 469

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 79/232 (34%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI---------- 83
             + D+ +   + + A          P      + + G  G GK+ L             
Sbjct: 137 KFNFDNFVEGKSNQLARAASQQVAQNPGVGYNPLFIYGGVGLGKTHLMQAVGNAILERSP 196

Query: 84  -------WSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDF---NDTQLFHII 130
                   S++      S+I  +      D   +   +L++DI        +  + FH  
Sbjct: 197 DAKVVYLHSERYVQQMVSSIKNNTIEEFKDFYRSVNALLIDDIQFFAGKPRSQEEFFHTF 256

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++ +    ++MT   +P         L SR      V +  PD +    ++       Q
Sbjct: 257 NALIEQGQQIIMTCDRYPKEIEGLEERLKSRFGWGLTVAVEPPDLETRVAILQSKAEQSQ 316

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I +   +A +I +R+  ++   E  + ++   A   G  IT     E LK+ 
Sbjct: 317 ISLSTDVAFFIAKRVRANIRELEGALRRVIATAQFTGRPITVESTKEALKDQ 368


>gi|285016822|ref|YP_003374533.1| chromosomal replication initiator protein DnaA [Xanthomonas
           albilineans GPE PC73]
 gi|283472040|emb|CBA14547.1| probable chromosomal replication initiator protein dnaa
           [Xanthomonas albilineans]
          Length = 445

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 29/258 (11%)

Query: 17  KNDQPKNKEEQLFFSFP--RCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILV 70
            +   +    QL   F        +  + +   +       AV+            ++L 
Sbjct: 90  DSTTARTPSPQLLEPFAGNLDSHYTFANFVEGRSNQLGLAAAVQAAQKPGDRAHNPLLLY 149

Query: 71  GPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDT-------RKP 110
           G +G GK+ L     +  R                FS + ++L    +D           
Sbjct: 150 GSTGLGKTHLMFAAGNAMREQNPNARVMYLRSEQFFSAMIRALQEKTMDQFKRQFQQVDA 209

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI      D    + FH  N++      +++T   +P       P L SRL     
Sbjct: 210 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 269

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V I  PD +    +++    +R   I  ++A  I ++M  ++   E  ++ +   A   G
Sbjct: 270 VAIDPPDFETRAAIVLAKARERGAEIPDEVAFLIAKKMRSNVRDLEGALNTLAARANFTG 329

Query: 228 MGITRSLAAEVLKETQQC 245
             IT   A E L++  + 
Sbjct: 330 RAITTEFAQETLRDLLRA 347


>gi|253573854|ref|ZP_04851196.1| chromosomal replication initiator protein DnaA [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846331|gb|EES74337.1| chromosomal replication initiator protein DnaA [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 448

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 88/238 (36%), Gaps = 36/238 (15%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-------- 83
               + D  ++ S    A     +    P+R    + L G  G GK+ L +         
Sbjct: 111 NPKYTFDTFVIGSGNRFAHAASLAVAEAPARAYNPLFLYGGVGLGKTHLMHAIGHYILEH 170

Query: 84  -------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                        ++++  ++   N A+S  +        +L++DI  L   +    + F
Sbjct: 171 SPSSKVVYISSEKFTNEFINSIRDNRAESFRNKY-RNIDILLIDDIQFLAGKESTQEEFF 229

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H+    +++++   P         L SR +   +  I  PD +    ++ K   
Sbjct: 230 HTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKAK 289

Query: 188 DRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              + I  +   YI  +++   R L     ++V      +L     IT  LAAE LK+
Sbjct: 290 AENLDIPNEAMMYIANQIDTNIRELEGALIRVVA---YSSLINQ-DITTHLAAEALKD 343


>gi|269836034|ref|YP_003318262.1| chromosomal replication initiator protein DnaA [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785297|gb|ACZ37440.1| chromosomal replication initiator protein DnaA [Sphaerobacter
           thermophilus DSM 20745]
          Length = 471

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 92/251 (36%), Gaps = 30/251 (11%)

Query: 25  EEQLFF----SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGK 77
            +QL                +  +V S    A     +    P+     + + G  G GK
Sbjct: 119 PQQLELTATPEHGLNPRYVFEKFVVGSNNRLAHAAALAVADRPADKFNPLYIYGGVGLGK 178

Query: 78  SCLANIWSDKSRST------RFSNIAKSLDSILID--------------TRKPVLLEDID 117
           + L +    ++ +       R+ +     + ++                T   ++++DI 
Sbjct: 179 THLLHAIGHRALARSPELRIRYVSSETFTNELINAIRQQRTEDFRNRYRTIDILMIDDIQ 238

Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
            +   +    + FH  N+++Q    +++++   P +       L SR +   +  I  PD
Sbjct: 239 FIAGKESTQEEFFHTFNALYQSGKQIVISSDRPPKAIPTLADRLRSRFEGGLLADIQPPD 298

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    ++ +   +  + +   +  Y+ +++E ++   E  ++K+  L+      I+  L
Sbjct: 299 LETRAAILAEKGRELGVTVPDDVLEYVARKVESNIRELEGALNKIIALSQLYHRPISMEL 358

Query: 235 AAEVLKETQQC 245
           A E L ++   
Sbjct: 359 AIEALTDSVGA 369


>gi|320532814|ref|ZP_08033591.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134965|gb|EFW27136.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 533

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90
               + D  +  S+   A     +    P+R    + + G SG GK+ L +     +++ 
Sbjct: 187 NPRYTFDTYVTGSSNRFAHATALAVAEAPARAYNPLFIYGGSGLGKTHLLHAIGHYAQTL 246

Query: 91  ------------TRFSNIAKSLDSILIDTRKP------------VLLEDIDLLDFNDTQL 126
                          S+    +     D  +             +L++DI  L   ++ L
Sbjct: 247 NPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQFLQGKESTL 306

Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
              FH  NS+H     +++T+   P + G     L SR +   +  +  PD +    ++ 
Sbjct: 307 EEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDLETRIAILS 366

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +      + +   +  YI  R+  ++   E  + ++   A      + ++LA  VLK+
Sbjct: 367 RKGTAEGLDLPFDVLEYIASRITTNIRELEGALIRVTAFASLNKQPVDQTLAEMVLKD 424


>gi|295402123|ref|ZP_06812082.1| chromosomal replication initiator protein DnaA [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109152|ref|YP_003987468.1| chromosomal replication initiator protein DnaA [Geobacillus sp.
           Y4.1MC1]
 gi|294975806|gb|EFG51425.1| chromosomal replication initiator protein DnaA [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214253|gb|ADP72857.1| chromosomal replication initiator protein DnaA [Geobacillus sp.
           Y4.1MC1]
          Length = 450

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 96/269 (35%), Gaps = 37/269 (13%)

Query: 10  FFVPDKQKNDQ--------PKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDS 58
           F +P  Q  D          + K  +    FP        + D  ++ S    A     +
Sbjct: 78  FIIPPNQSEDDFELQQSLKKQRKSYEEPADFPQSMLNPKYTFDTFVIGSGNRFAHAASLA 137

Query: 59  WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98
               P++    + + G  G GK+ L +                   S+K  +   + I  
Sbjct: 138 VAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRD 197

Query: 99  SLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +      +  + V   L++DI  L   +    + FH  N++H+    +++++   P    
Sbjct: 198 NRPDDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIP 257

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR +   +  I+ PD +    ++ K        I  ++  YI  +++ ++   
Sbjct: 258 TLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIREL 317

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           E  + ++   +      I   LAAE LK+
Sbjct: 318 EGALIRVVAYSSLINKEINADLAAEALKD 346


>gi|154503049|ref|ZP_02040109.1| hypothetical protein RUMGNA_00871 [Ruminococcus gnavus ATCC 29149]
 gi|153796290|gb|EDN78710.1| hypothetical protein RUMGNA_00871 [Ruminococcus gnavus ATCC 29149]
          Length = 456

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 95/281 (33%), Gaps = 36/281 (12%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60
           ++ + +D+   + +K+     K +   +F         + D  +V S    A     +  
Sbjct: 78  VSFVTDDH-VVIQEKKDTAVKKQQSNAIFEQANLNPKYTFDTFVVGSNNNFAHAASLAVA 136

Query: 61  SWPS---RVVILVGPSGSGKSCLANIWS-----------------DKSRSTRFSNIAKSL 100
             P      + L G  G GK+ L +  +                 +   +     +    
Sbjct: 137 DSPGEIYNPLFLYGGVGLGKTHLMHSIAHFILEKDPTKKVLYVTSETFTNELIDALKIGK 196

Query: 101 DSILID---------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           +   +              +L++DI  +   +    + FH  N +H     +++++   P
Sbjct: 197 NGNELAMTTFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNHLHVSGKQIIISSDKPP 256

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI---FIDKKLAAYIVQRM 205
                    L +R +   +  IS PD +    ++ K      +    I  ++  YI   +
Sbjct: 257 KDIETLEARLRTRFEWGLIADISSPDYETRMAILRKKEELDGLERYHIPDEVMQYIANNI 316

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             ++   E  ++K+  LA      I   LAAE LK+    +
Sbjct: 317 TSNIRELEGSLNKLIALANLENKPIDIPLAAEALKDMISPN 357


>gi|312903107|ref|ZP_07762288.1| replication initiator protein DnaA [Enterococcus faecalis TX0635]
 gi|310633498|gb|EFQ16781.1| replication initiator protein DnaA [Enterococcus faecalis TX0635]
          Length = 447

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + D  ++    + A      +   P      +   G  G GK+ L +    +    
Sbjct: 112 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVN 171

Query: 89  --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128
              +      +++  +  I++                  +L++DI  L   +  L   FH
Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++  +  +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 232 TFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A   G  IT SLAA+ LK  
Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSL 345


>gi|153952671|ref|YP_001393436.1| chromosomal replication initiation protein [Clostridium kluyveri
           DSM 555]
 gi|219853344|ref|YP_002470466.1| chromosomal replication initiator protein dnaA [Clostridium
           kluyveri NBRC 12016]
 gi|189044635|sp|A5N457|DNAA_CLOK5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777896|sp|B9DXS7|DNAA_CLOK1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|146345552|gb|EDK32088.1| DnaA [Clostridium kluyveri DSM 555]
 gi|219567068|dbj|BAH05052.1| chromosomal replication initiator protein dnaA [Clostridium
           kluyveri NBRC 12016]
          Length = 451

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               +    ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 115 NPKYTFTSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHHILHN 174

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I    +       + +   L++DI  +   +    + FH
Sbjct: 175 NTSCKVVYVSSEKFTNELINSIKDDKNVEFRSKYRNIDVLLIDDIQFIAGKERTQEEFFH 234

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 235 TFNALYEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADV 294

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ I  ++ AYI  +++ ++   E  + ++   +      I+  LA E LK+
Sbjct: 295 EKLNIPNEVMAYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLAIEALKD 347


>gi|138893680|ref|YP_001124133.1| chromosomal replication initiation protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|166201885|sp|A4IJ84|DNAA_GEOTN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|134265193|gb|ABO65388.1| DnaA [Geobacillus thermodenitrificans NG80-2]
          Length = 450

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 37/269 (13%)

Query: 10  FFVPDKQ--------KNDQPKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDS 58
           F +P  Q         + + + K  +    FP        + D  ++ S    A     +
Sbjct: 78  FIIPPNQADEKLELPSSAKKQRKPYEEANDFPQSMLNPKYTFDTFVIGSGNRFAHAASLA 137

Query: 59  WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98
               P++    + + G  G GK+ L +                   S+K  +   + I  
Sbjct: 138 VAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRD 197

Query: 99  SLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +      +  + V   L++DI  L   +    + FH  N++H+    +++++   P    
Sbjct: 198 NRPDDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIP 257

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR +   +  I+ PD +    ++ K        I  ++  YI  +++ ++   
Sbjct: 258 TLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIREL 317

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           E  + ++   +      IT  LAAE LK+
Sbjct: 318 EGALIRVVAYSSLINKEITADLAAEALKD 346


>gi|307719922|ref|YP_003891062.1| chromosomal replication initiator protein DnaA [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978015|gb|ADN08050.1| chromosomal replication initiator protein DnaA [Sulfurimonas
           autotrophica DSM 16294]
          Length = 435

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 88/234 (37%), Gaps = 24/234 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN----IWSDK 87
               S D+ +V  + + A   + S      +V   + + G  G GK+ L      ++ ++
Sbjct: 101 NPSHSFDNFMVGGSNQFAYAAVKSVSENAGKVYNPLFIYGGVGLGKTHLMQAAGNVFQNE 160

Query: 88  SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHII 130
            +   ++ + + L+  +   R                +L++DI  L   +    + FH  
Sbjct: 161 GKVVIYTTVEQFLNDFIRHVRNKTMERFQEKYRKCDVLLIDDIQFLSNKEGIQEEFFHTF 220

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
            ++      +++TA   P   G     L SR +   V  I  P+ +    +I K     +
Sbjct: 221 EALKGAGKQIILTADKHPKKIGGLEARLQSRFEWGLVADIQPPELETKIAIIKKKCEINK 280

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + + + +  YI   ++ ++   E ++ K+   +    + I       VLK+   
Sbjct: 281 VKLSEDIVNYIATVIDSNVREIEGILSKLHAYSQLMHVDIDLDFTKNVLKDQMN 334


>gi|212637850|ref|YP_002314370.1| chromosomal replication initiation protein [Anoxybacillus
           flavithermus WK1]
 gi|226735773|sp|B7GFK8|DNAA_ANOFW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|212559330|gb|ACJ32385.1| DNA replication initiation ATPase [Anoxybacillus flavithermus WK1]
          Length = 447

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 94/252 (37%), Gaps = 30/252 (11%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72
           +K+D  + +  Q   +       + D  ++ S    A     +    P++    + + G 
Sbjct: 98  RKHDDEQTEFPQSMLN----PKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGG 153

Query: 73  SGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---L 112
            G GK+ L +                   S+K  +   + I  +      +  + V   L
Sbjct: 154 VGLGKTHLMHAIGHYVLEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLL 213

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  L   +    + FH  N++H+    +++++   P         L SR +   +  
Sbjct: 214 IDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITD 273

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I+ PD +    ++ K        I  ++  YI  +++ ++   E  + ++   +      
Sbjct: 274 ITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKE 333

Query: 230 ITRSLAAEVLKE 241
           I   LAAE LK+
Sbjct: 334 INADLAAEALKD 345


>gi|152991598|ref|YP_001357319.1| chromosomal replication initiation protein [Sulfurovum sp. NBC37-1]
 gi|151423459|dbj|BAF70962.1| chromosome replication initiator protein DnaA [Sulfurovum sp.
           NBC37-1]
          Length = 442

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 94/254 (37%), Gaps = 27/254 (10%)

Query: 16  QKNDQP---KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69
           +K  +P   ++ E+Q   S      ++ +  +V  + + A     S    P ++   + L
Sbjct: 83  EKTSKPVVKQSNEKQHSKSTYLNPSLTFESFIVGPSNQFAYTTAKSVAEKPGQIYNPLFL 142

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------------PV 111
            G  G GK+ L     +   +   + I  +L+  +                        +
Sbjct: 143 YGGVGLGKTHLLQAIGNYHIALGKTVIYTTLEQFMNSFTSHLRSQTMDRFREKFRECDLL 202

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI  L   +    + FH  N ++  +  +++T+   P      +  L SR +   + 
Sbjct: 203 LIDDIQFLSRKEQTQEEFFHTFNELYNTNKQIVITSDRQPNKIAGLVDRLRSRFEWGLMA 262

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            I  P  +    +I K      I ++ ++  +I   M  ++   E  + K++ L+     
Sbjct: 263 DIQPPGLETKIAIIQKKCELDGIRLNHEIINFIATNMGDNIREIEGTIIKLNALSSMLNQ 322

Query: 229 GITRSLAAEVLKET 242
            IT   A   +K+ 
Sbjct: 323 DITLDFAQNAIKDQ 336


>gi|315170513|gb|EFU14530.1| replication initiator protein DnaA [Enterococcus faecalis TX1342]
          Length = 447

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + D  ++    + A      +   P      +   G  G GK+ L +    +    
Sbjct: 112 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVN 171

Query: 89  --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128
              +      +++  +  I++                  +L++DI  L   +  L   FH
Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++  +  +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 232 TFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A   G  IT SLAA+ LK  
Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSL 345


>gi|34556459|ref|NP_906274.1| chromosomal replication initiation protein [Wolinella succinogenes
           DSM 1740]
 gi|61212685|sp|Q7MSY2|DNAA_WOLSU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|34482173|emb|CAE09174.1| dnaA, probable chromosomal replication initiator protein [Wolinella
           succinogenes]
          Length = 437

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 86/232 (37%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  +V ++   A  +   +          +++ G +G GK+ L N   + + + 
Sbjct: 103 NPSFTFDSFVVGNSNRFAYEVSQNVAKKQGIAYNPLLIYGGTGLGKTHLLNSIGNYNVAK 162

Query: 92  RFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFN---DTQLFHII 130
             S I  + +  L D                      +L++D+           + FH  
Sbjct: 163 GKSVIYVTSEQFLNDYLYHIRNNTMDRFRDKYRACDYLLIDDVQFFGGKPQIQEEFFHTF 222

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +H  +  +++T+   P         L SR +   V  I  P+ +    +I K      
Sbjct: 223 NELHNKNKQIVLTSDKTPKQIAGLEERLKSRFEWGMVSDIQPPELETKINIIKKKCEFDG 282

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I++  ++ +YI   M+ ++   E ++ K++  A      IT   A  VLKE 
Sbjct: 283 IYLSNEIISYIATNMDNNIREIEGIIIKLNAYANLMNQEITLQFAKNVLKEQ 334


>gi|322381372|ref|ZP_08055375.1| chromosomal replication initiation-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154948|gb|EFX47219.1| chromosomal replication initiation-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 441

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 34/237 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  ++      A     +    P++    + L G  G GK+ L +         
Sbjct: 104 NSRYTFDTFVIGQGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYVLEH 163

Query: 87  --KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQLFH 128
             ++R    S+   + + I                T   +L++DI  +   +    + FH
Sbjct: 164 NPEARVLYISSEKFTNEFINAVRDNRGEDFRNKYRTIDVLLIDDIQFISGKEGTQEEFFH 223

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 224 TFNALHEEGKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAKA 283

Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  +   YI  +++   R L     ++V      +L     IT  LAAE LK+
Sbjct: 284 ENLEIPNEAMLYIANQIDTNIRELEGALIRVVA---YSSLINQ-DITTHLAAEALKD 336


>gi|167461551|ref|ZP_02326640.1| chromosomal replication initiation protein [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 452

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 34/237 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  ++      A     +    P++    + L G  G GK+ L +         
Sbjct: 115 NSRYTFDTFVIGQGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYVLEH 174

Query: 87  --KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQLFH 128
             ++R    S+   + + I                T   +L++DI  +   +    + FH
Sbjct: 175 NPEARVLYISSEKFTNEFINAVRDNRGEDFRNKYRTIDVLLIDDIQFISGKEGTQEEFFH 234

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 235 TFNALHEEGKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAKA 294

Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  +   YI  +++   R L     ++V      +L     IT  LAAE LK+
Sbjct: 295 ENLEIPNEAMLYIANQIDTNIRELEGALIRVVA---YSSLINQ-DITTHLAAEALKD 347


>gi|282856283|ref|ZP_06265564.1| chromosomal replication initiator protein DnaA [Pyramidobacter
           piscolens W5455]
 gi|282585860|gb|EFB91147.1| chromosomal replication initiator protein DnaA [Pyramidobacter
           piscolens W5455]
          Length = 438

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 86/258 (33%), Gaps = 34/258 (13%)

Query: 19  DQPKNKEEQLFFSFPRCL--------GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVV 67
            +P   EE L    P                  +V  +   A      +   P      +
Sbjct: 81  SKPVGAEEALPSPQPHSPIGSNGLNRQYDFTSFVVGKSNRLAHAASLAVAESPGEAYNPL 140

Query: 68  ILVGPSGSGKSCLANIWSDKSRS-----------------TRFSNIAKSLDSILIDTRKP 110
            + G  G GK+ L +   + ++                     + I  +  +      + 
Sbjct: 141 FIWGGVGLGKTHLMHAIGNYAQGKNGNTKVTYLSSEKFTNELITAIKNARTAEFRAKYRH 200

Query: 111 V---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
           V   L++DI  L   +    + FH  N +H     +++++   P   G     + SR + 
Sbjct: 201 VDILLIDDIQFLAGKESTQDEFFHTFNDLHTEHKQIVLSSDRPPKELGDIEDRIISRFEW 260

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             V  I  PD +    ++ K    R+I ++  +  ++ + +  ++   E  ++++   A 
Sbjct: 261 GLVTDIQQPDYETRIAILKKKAEQRRIPVNDDVIGFLAENIPSNIRELEGALNRVIASAN 320

Query: 225 SRGMGITRSLAAEVLKET 242
                IT     E LK+ 
Sbjct: 321 FSQEPITIENTQEWLKDV 338


>gi|326772843|ref|ZP_08232127.1| DNA-directed DNA replication initiator protein [Actinomyces
           viscosus C505]
 gi|326637475|gb|EGE38377.1| DNA-directed DNA replication initiator protein [Actinomyces
           viscosus C505]
          Length = 601

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90
               + D  +  S+   A     +    P+R    + + G SG GK+ L +     +++ 
Sbjct: 255 NPRYTFDTYVTGSSNRFAHATALAVAEAPARAYNPLFIYGGSGLGKTHLLHAIGHYAQTL 314

Query: 91  ------------TRFSNIAKSLDSILIDTRKP------------VLLEDIDLLDFNDTQL 126
                          S+    +     D  +             +L++DI  L   ++ L
Sbjct: 315 NPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQFLQGKESTL 374

Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
              FH  NS+H     +++T+   P + G     L SR +   +  +  PD +    ++ 
Sbjct: 375 EEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDLETRIAILS 434

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +      + +   +  YI  R+  ++   E  + ++   A      + ++LA  VLK+
Sbjct: 435 RKGTAEGLDLPFDVLEYIASRITTNIRELEGALIRVTAFASLNKQPVDQTLAEMVLKD 492


>gi|307825356|ref|ZP_07655575.1| chromosomal replication initiator protein DnaA [Methylobacter
           tundripaludum SV96]
 gi|307733531|gb|EFO04389.1| chromosomal replication initiator protein DnaA [Methylobacter
           tundripaludum SV96]
          Length = 438

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 82/233 (35%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D+ +   + + A            +    +++ G SG GK+ + +   +       
Sbjct: 106 AFTFDNFVEGKSNQLARAASMQVSENIGKAYNPLLIYGSSGLGKTHMMHAIGNAVLQKNP 165

Query: 94  SNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQLFHII 130
           S     L S                            +L++DI      +    + FH  
Sbjct: 166 SATVVYLHSEKFVQDMVKALQQNSINAFKEFYRGVDVLLIDDIQFFAGKERSQEEFFHTF 225

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N++ +    +++T   +P    + L D L SR      V I  PD +    +++K  A  
Sbjct: 226 NTLLEKKHQVILTCDKYPKEI-IGLEDRLKSRFGWGLPVLIEPPDMETRAAILMKKAALV 284

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            I + + +A +I +R+  ++   E  + ++   A   G  IT     E L + 
Sbjct: 285 NIELAQDVAFFIAKRIPSNVRDLEGALRRVIANAQFTGREITIEFTKEALHDL 337


>gi|197120422|ref|YP_002132373.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter
           sp. K]
 gi|196170271|gb|ACG71244.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter
           sp. K]
          Length = 458

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 88/236 (37%), Gaps = 25/236 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS----DK 87
               + D  +V ++   A     +  + P R    + L G SG GK+ L +  +    +K
Sbjct: 125 NPRYAFDTFVVGASNHFAFAAAQAVAANPGRTWNPLFLHGDSGLGKTHLLHAVAHAILEK 184

Query: 88  SRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHI 129
           S        ++   +  +                    +L++D+  L   D    + FH 
Sbjct: 185 SGGRVAIVSSERYTNDFVAALSKGTMDEFRRKYRECSALLVDDVQFLAGKDKTAEEFFHT 244

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H +   +++++   P         LCSR +    V+I +P+ +    ++ K     
Sbjct: 245 FNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEVPEFETRAAILQKKADVE 304

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +I +   +   + Q +  ++   E  + ++   A  +   IT  LA +VL +    
Sbjct: 305 KIDLPDDVTQLLAQHIRSNVRELEGALMRLAAFASLKSEPITVPLARDVLADVIPP 360


>gi|220915124|ref|YP_002490428.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219952978|gb|ACL63362.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 458

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 88/236 (37%), Gaps = 25/236 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS----DK 87
               + D  +V ++   A     +  + P R    + L G SG GK+ L +  +    +K
Sbjct: 125 NPRYAFDTFVVGASNHFAFAAAQAVAANPGRTWNPLFLHGDSGLGKTHLLHAVAHAILEK 184

Query: 88  SRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHI 129
           S        ++   +  +                    +L++D+  L   D    + FH 
Sbjct: 185 SGGRVAIVSSERYTNDFVAALSKGTMDEFRRKYRECSALLVDDVQFLAGKDKTAEEFFHT 244

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H +   +++++   P         LCSR +    V+I +P+ +    ++ K     
Sbjct: 245 FNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEVPEFETRAAILQKKADVE 304

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +I +   +   + Q +  ++   E  + ++   A  +   IT  LA +VL +    
Sbjct: 305 KIDLPDDVTQLLAQHIRSNVRELEGALMRLAAFASLKSEPITVPLARDVLADVIPP 360


>gi|77358983|ref|YP_338558.1| DNA replication initiator [Pseudoalteromonas haloplanktis TAC125]
 gi|76873894|emb|CAI85115.1| DNA replication initiator protein, transcriptional regulator of
           replication and other genes; binds DNA at DnaA boxes,
           binds cardiolipin and other acidic phospholipids, binds
           ATP [Pseudoalteromonas haloplanktis TAC125]
          Length = 474

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +   + + A          P      V + G +G GK+ L +     I ++
Sbjct: 140 KENYTFDSFVEGKSNQLAKAAATQVADNPGAAFNPVFIYGGTGLGKTHLLHAVGNGILAN 199

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K  +      ++     ++   +   +E+       +D L  +D            + FH
Sbjct: 200 KPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANKERSQEEFFH 259

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      + I  P+ +    +++K    
Sbjct: 260 TFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAILMKKAQQ 319

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +  ++A +I +++  ++   E  ++++   A   G  I+     E L++ 
Sbjct: 320 SKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISIDFVKEALRDL 373


>gi|148262086|ref|YP_001228792.1| chromosomal replication initiation protein [Geobacter
           uraniireducens Rf4]
 gi|189044596|sp|A5GDX1|DNAA_GEOUR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|146395586|gb|ABQ24219.1| chromosomal replication initiator protein DnaA [Geobacter
           uraniireducens Rf4]
          Length = 449

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 98/257 (38%), Gaps = 26/257 (10%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVV 67
           F P  + N+  K   + +  +       + D  +  ++ + A     +  S P      +
Sbjct: 91  FTPVIKDNEPSKETNKNIDITANLNPKYTFDSFVCGASNQFAHAASQAVASNPASNYNPL 150

Query: 68  ILVGPSGSGKSCLA-----NIWSDKSRSTRFSNIAKSLDSILID---------------T 107
            + G  G GK+ L      +I  +  ++      ++   + +I+                
Sbjct: 151 FIYGGVGLGKTHLLIAIGNHIKENNKKAKICYYSSEKFMNEMINCLRYKKMDEFRNKFRK 210

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI  +   +    + FH  N++++    +++T+  FP         L SR + 
Sbjct: 211 MDILLIDDIQFMAGKEATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEW 270

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             +  I  PD +    ++ K      I +   +A ++      ++   E ++ ++   A 
Sbjct: 271 GLIADIQPPDIETKIAILKKKSDLNSITLPNDVALFLASSATSNVRELEGMLIRLGAYAS 330

Query: 225 SRGMGITRSLAAEVLKE 241
             G  IT ++A ++LK+
Sbjct: 331 LTGSEITLNMARDILKD 347


>gi|254495524|ref|ZP_05108448.1| chromosomal replication initiator protein DnaA [Polaribacter sp.
           MED152]
 gi|85819880|gb|EAQ41037.1| chromosomal replication initiator protein DnaA [Polaribacter sp.
           MED152]
          Length = 475

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 91/259 (35%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  QK       E QL          S  + +   +   A     +  + P      
Sbjct: 125 FIIPGLQKV----KIESQL------NPNYSFANFVEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ L++                   S+K       ++  +  +  I   
Sbjct: 175 PLLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRNDFIHFY 234

Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++D+  L          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++        + + +++  YI + ++ ++   E ++  M   
Sbjct: 295 KWGLSAELQAPDYETRISILQNKLFRDGVEMPEEIIEYIAKNIKSNVRELEGVIISMIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           A       +  LA +++ +
Sbjct: 355 ASFNRREFSIELAKQIVDK 373


>gi|86156431|ref|YP_463216.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85772942|gb|ABC79779.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 457

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 89/236 (37%), Gaps = 25/236 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87
               + D  +V ++   A     +  + P R    + L G SG GK+ L +  +      
Sbjct: 124 NPRYAFDTFVVGASNHFAFAAAQAVAANPGRTWNPLFLHGDSGLGKTHLLHAVAHAILEK 183

Query: 88  --SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLDFND---TQLFHI 129
              R    S+   + D +   +R               +L++D+  L   D    + FH 
Sbjct: 184 SGGRVAIVSSERYTNDFVAALSRGTMDEFRRKYRECSALLVDDVQFLAGKDKTAEEFFHT 243

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H +   +++++   P         LCSR +    V+I +P+ +    ++ K     
Sbjct: 244 FNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEVPEFETRAAILQKKADVE 303

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +I +   +   + Q +  ++   E  + ++   A  +   IT  LA +VL +    
Sbjct: 304 KIDLPDDVTQLLAQHIRSNVRELEGALMRLAAFASLKSEPITVPLARDVLSDVIPP 359


>gi|299541765|ref|ZP_07052088.1| chromosomal replication initiation protein [Lysinibacillus
           fusiformis ZC1]
 gi|298725503|gb|EFI66144.1| chromosomal replication initiation protein [Lysinibacillus
           fusiformis ZC1]
          Length = 449

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
               + D  ++ S    A     +    P++      + G  G GK+ L +         
Sbjct: 114 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPFFIYGGVGLGKTHLMHAIGHYVLEH 173

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 174 NPNAKVVYLSSEKFTNEFINSIRDNKALDFRNKYRNVDVLLIDDIQFLAGKESTQEEFFH 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 234 TFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAPPDLETRIAILRKKAKA 293

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +  ++  YI  +++ ++   E  + ++   +      IT +LAAE LK+
Sbjct: 294 DGLEVPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITATLAAEALKD 346


>gi|315453775|ref|YP_004074045.1| chromosomal replication initiator protein [Helicobacter felis ATCC
           49179]
 gi|315132827|emb|CBY83455.1| chromosomal replication initiator protein [Helicobacter felis ATCC
           49179]
          Length = 431

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 100/265 (37%), Gaps = 26/265 (9%)

Query: 6   EDYSFFVPDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAIEQAVRLID--SWP 60
           + Y   V  + K+ Q     + L     +         D L+V +  + AV++    +  
Sbjct: 66  KGYKVQVQVRPKSQQQTTPPKPLMVAKNNPTLNPVFRFDTLVVGACNQMAVKIATQVARQ 125

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------- 106
           S     V+  G  G GK+ L N   + +     S +  + +  L D              
Sbjct: 126 SGVYNPVLFFGGVGLGKTHLLNAIGNHACDQLKSVLYVTAEQFLNDYVSGLNSRSMDKFQ 185

Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
               +   +L++D+      +    + FH  N++H  +  +++T+   P         L 
Sbjct: 186 EKYRSCDYLLIDDVQFFAGKEKVQEEFFHTFNALHAQNKQIVITSDKPPKDIKGLAERLL 245

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SR +   +  +  P  +    +I +  A  QI + +++  Y+   +  ++   E  + ++
Sbjct: 246 SRFEMGMLASVHPPTLETKLAIIEQKCAQDQIELPQEVLHYLASHLNENIRQIEGTLLRL 305

Query: 220 DNLALSRGMGITRSLAAEVLKETQQ 244
           +  A      I+  +A  V++ET +
Sbjct: 306 NATATLSHQPISLQMAQSVVQETCK 330


>gi|29374662|ref|NP_813814.1| chromosomal replication initiation protein [Enterococcus faecalis
           V583]
 gi|227518108|ref|ZP_03948157.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis TX0104]
 gi|227555685|ref|ZP_03985732.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis HH22]
 gi|229547129|ref|ZP_04435854.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis TX1322]
 gi|229550699|ref|ZP_04439424.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis ATCC 29200]
 gi|255971549|ref|ZP_05422135.1| chromosomal replication initiator protein [Enterococcus faecalis
           T1]
 gi|255974522|ref|ZP_05425108.1| chromosomal replication initiator protein [Enterococcus faecalis
           T2]
 gi|256618527|ref|ZP_05475373.1| chromosomal replication initiator protein [Enterococcus faecalis
           ATCC 4200]
 gi|256761854|ref|ZP_05502434.1| chromosomal replication initiator protein [Enterococcus faecalis
           T3]
 gi|256854981|ref|ZP_05560342.1| chromosomal replication initiator protein dnaA [Enterococcus
           faecalis T8]
 gi|256957015|ref|ZP_05561186.1| chromosomal replication initiator protein [Enterococcus faecalis
           DS5]
 gi|256960824|ref|ZP_05564995.1| chromosomal replication initiator protein [Enterococcus faecalis
           Merz96]
 gi|256963983|ref|ZP_05568154.1| chromosomal replication initiator protein [Enterococcus faecalis
           HIP11704]
 gi|257078692|ref|ZP_05573053.1| chromosomal replication initiator protein [Enterococcus faecalis
           JH1]
 gi|257081347|ref|ZP_05575708.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis E1Sol]
 gi|257084004|ref|ZP_05578365.1| chromosomal replication initiator protein [Enterococcus faecalis
           Fly1]
 gi|257087834|ref|ZP_05582195.1| chromosomal replication initiator protein [Enterococcus faecalis
           D6]
 gi|257088486|ref|ZP_05582847.1| chromosomal replication initiator protein dnaA [Enterococcus
           faecalis CH188]
 gi|257417426|ref|ZP_05594420.1| chromosomal replication initiator protein [Enterococcus faecalis
           AR01/DG]
 gi|257418842|ref|ZP_05595836.1| chromosomal replication initiator protein [Enterococcus faecalis
           T11]
 gi|257421343|ref|ZP_05598333.1| chromosomal replication initiator protein dnaA [Enterococcus
           faecalis X98]
 gi|293382662|ref|ZP_06628590.1| ATPase [Enterococcus faecalis R712]
 gi|293387926|ref|ZP_06632462.1| ATPase [Enterococcus faecalis S613]
 gi|294781248|ref|ZP_06746595.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis PC1.1]
 gi|300861740|ref|ZP_07107820.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis TUSoD Ef11]
 gi|307268916|ref|ZP_07550280.1| replication initiator protein DnaA [Enterococcus faecalis TX4248]
 gi|307274012|ref|ZP_07555222.1| replication initiator protein DnaA [Enterococcus faecalis TX0855]
 gi|307276499|ref|ZP_07557619.1| replication initiator protein DnaA [Enterococcus faecalis TX2134]
 gi|307284059|ref|ZP_07564229.1| replication initiator protein DnaA [Enterococcus faecalis TX0860]
 gi|307287182|ref|ZP_07567253.1| replication initiator protein DnaA [Enterococcus faecalis TX0109]
 gi|307296590|ref|ZP_07576410.1| replication initiator protein DnaA [Enterococcus faecalis TX0411]
 gi|312908814|ref|ZP_07767753.1| replication initiator protein DnaA [Enterococcus faecalis DAPTO
           512]
 gi|312951720|ref|ZP_07770614.1| replication initiator protein DnaA [Enterococcus faecalis TX0102]
 gi|312979544|ref|ZP_07791226.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis DAPTO 516]
 gi|38257441|sp|Q839Z5|DNAA_ENTFA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|29342120|gb|AAO79886.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis V583]
 gi|227074442|gb|EEI12405.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis TX0104]
 gi|227175195|gb|EEI56167.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis HH22]
 gi|229304132|gb|EEN70128.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis ATCC 29200]
 gi|229307711|gb|EEN73698.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis TX1322]
 gi|255962567|gb|EET95043.1| chromosomal replication initiator protein [Enterococcus faecalis
           T1]
 gi|255967394|gb|EET98016.1| chromosomal replication initiator protein [Enterococcus faecalis
           T2]
 gi|256598054|gb|EEU17230.1| chromosomal replication initiator protein [Enterococcus faecalis
           ATCC 4200]
 gi|256683105|gb|EEU22800.1| chromosomal replication initiator protein [Enterococcus faecalis
           T3]
 gi|256709494|gb|EEU24541.1| chromosomal replication initiator protein dnaA [Enterococcus
           faecalis T8]
 gi|256947511|gb|EEU64143.1| chromosomal replication initiator protein [Enterococcus faecalis
           DS5]
 gi|256951320|gb|EEU67952.1| chromosomal replication initiator protein [Enterococcus faecalis
           Merz96]
 gi|256954479|gb|EEU71111.1| chromosomal replication initiator protein [Enterococcus faecalis
           HIP11704]
 gi|256986722|gb|EEU74024.1| chromosomal replication initiator protein [Enterococcus faecalis
           JH1]
 gi|256989377|gb|EEU76679.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis E1Sol]
 gi|256992034|gb|EEU79336.1| chromosomal replication initiator protein [Enterococcus faecalis
           Fly1]
 gi|256995864|gb|EEU83166.1| chromosomal replication initiator protein [Enterococcus faecalis
           D6]
 gi|256997298|gb|EEU83818.1| chromosomal replication initiator protein dnaA [Enterococcus
           faecalis CH188]
 gi|257159254|gb|EEU89214.1| chromosomal replication initiator protein [Enterococcus faecalis
           ARO1/DG]
 gi|257160670|gb|EEU90630.1| chromosomal replication initiator protein [Enterococcus faecalis
           T11]
 gi|257163167|gb|EEU93127.1| chromosomal replication initiator protein dnaA [Enterococcus
           faecalis X98]
 gi|291079968|gb|EFE17332.1| ATPase [Enterococcus faecalis R712]
 gi|291082663|gb|EFE19626.1| ATPase [Enterococcus faecalis S613]
 gi|294451711|gb|EFG20166.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis PC1.1]
 gi|295112341|emb|CBL30978.1| chromosomal replication initiator protein DnaA [Enterococcus sp.
           7L76]
 gi|300848265|gb|EFK76022.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis TUSoD Ef11]
 gi|306495926|gb|EFM65514.1| replication initiator protein DnaA [Enterococcus faecalis TX0411]
 gi|306501780|gb|EFM71071.1| replication initiator protein DnaA [Enterococcus faecalis TX0109]
 gi|306503430|gb|EFM72679.1| replication initiator protein DnaA [Enterococcus faecalis TX0860]
 gi|306506826|gb|EFM75976.1| replication initiator protein DnaA [Enterococcus faecalis TX2134]
 gi|306509320|gb|EFM78380.1| replication initiator protein DnaA [Enterococcus faecalis TX0855]
 gi|306514724|gb|EFM83275.1| replication initiator protein DnaA [Enterococcus faecalis TX4248]
 gi|310625252|gb|EFQ08535.1| replication initiator protein DnaA [Enterococcus faecalis DAPTO
           512]
 gi|310630293|gb|EFQ13576.1| replication initiator protein DnaA [Enterococcus faecalis TX0102]
 gi|311287726|gb|EFQ66282.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis DAPTO 516]
 gi|315026677|gb|EFT38609.1| replication initiator protein DnaA [Enterococcus faecalis TX2137]
 gi|315030122|gb|EFT42054.1| replication initiator protein DnaA [Enterococcus faecalis TX4000]
 gi|315033557|gb|EFT45489.1| replication initiator protein DnaA [Enterococcus faecalis TX0017]
 gi|315036380|gb|EFT48312.1| replication initiator protein DnaA [Enterococcus faecalis TX0027]
 gi|315143595|gb|EFT87611.1| replication initiator protein DnaA [Enterococcus faecalis TX2141]
 gi|315148267|gb|EFT92283.1| replication initiator protein DnaA [Enterococcus faecalis TX4244]
 gi|315151291|gb|EFT95307.1| replication initiator protein DnaA [Enterococcus faecalis TX0012]
 gi|315153717|gb|EFT97733.1| replication initiator protein DnaA [Enterococcus faecalis TX0031]
 gi|315155123|gb|EFT99139.1| replication initiator protein DnaA [Enterococcus faecalis TX0043]
 gi|315158747|gb|EFU02764.1| replication initiator protein DnaA [Enterococcus faecalis TX0312]
 gi|315163331|gb|EFU07348.1| replication initiator protein DnaA [Enterococcus faecalis TX0645]
 gi|315165728|gb|EFU09745.1| replication initiator protein DnaA [Enterococcus faecalis TX1302]
 gi|315168220|gb|EFU12237.1| replication initiator protein DnaA [Enterococcus faecalis TX1341]
 gi|315174182|gb|EFU18199.1| replication initiator protein DnaA [Enterococcus faecalis TX1346]
 gi|315573991|gb|EFU86182.1| replication initiator protein DnaA [Enterococcus faecalis TX0309B]
 gi|315578839|gb|EFU91030.1| replication initiator protein DnaA [Enterococcus faecalis TX0630]
 gi|315581942|gb|EFU94133.1| replication initiator protein DnaA [Enterococcus faecalis TX0309A]
 gi|323479240|gb|ADX78679.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecalis 62]
 gi|327533854|gb|AEA92688.1| ATPase [Enterococcus faecalis OG1RF]
          Length = 447

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + D  ++    + A      +   P      +   G  G GK+ L +    +    
Sbjct: 112 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVN 171

Query: 89  --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128
              +      +++  +  I++                  +L++DI  L   +  L   FH
Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++  +  +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 232 TFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A   G  IT SLAA+ LK  
Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSL 345


>gi|226225407|ref|YP_002759513.1| chromosomal replication initiator protein DnaA [Gemmatimonas
           aurantiaca T-27]
 gi|226088598|dbj|BAH37043.1| chromosomal replication initiator protein DnaA [Gemmatimonas
           aurantiaca T-27]
          Length = 472

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 95/248 (38%), Gaps = 28/248 (11%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           +Q   S P     + D  ++  + + A     +    P +V   + + G +G GK+ L  
Sbjct: 109 QQPRISTPLNPRYTFDQFVIGKSNDVAAAAAQAAAQAPGKVYNPLFIYGETGLGKTHLMQ 168

Query: 83  IWSDK------------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLLDFN 122
             + +                  +     +  A ++       R+   +L++D+  L   
Sbjct: 169 GIAHELLRRTPTLRLAYVGTEQFTNEFIGAIQAGAMGDFRRRFREIDLLLVDDVQFLKGK 228

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N+I++    +++T+   P         L SR +   V  I  PD +   
Sbjct: 229 ESTQEEFFHTFNAIYEAGRQIVLTSDRPPKEIPGLESRLVSRFEWGMVANIDSPDLEHRI 288

Query: 180 KVIVKMFADR--QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
            ++ K  +    ++ I  ++  +I Q ++ S+   E  + K+   A  +   I+  LA E
Sbjct: 289 AILKKKASLDHLELTIPDEVIEFIAQHVKSSVRELEGSIIKLLAYASLKHRDISVDLARE 348

Query: 238 VLKETQQC 245
            L++  + 
Sbjct: 349 ALRDKLRA 356


>gi|329960254|ref|ZP_08298696.1| replication initiator protein DnaA [Bacteroides fluxus YIT 12057]
 gi|328532927|gb|EGF59704.1| replication initiator protein DnaA [Bacteroides fluxus YIT 12057]
          Length = 465

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 28/242 (11%)

Query: 33  PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87
           P      + +  +   + + +  + ++    P++     + L G SG GK+ LAN    K
Sbjct: 125 PHLNPEYNFETFIEGYSNKLSRSVAEAVALNPAKTIFNPLFLYGASGVGKTHLANAIGTK 184

Query: 88  -------SRSTRFSNIA---KSLDSILIDTRKPVL-------------LEDIDLLDFNDT 124
                   R    S      +  DS+  +T    +             +++   +     
Sbjct: 185 IKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQEFAGVTKTQN 244

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             FHI N +HQ    L++T+   PV        L +R K   V ++  P  +  + ++  
Sbjct: 245 TFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELERPTVELRKNILRN 304

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 +    ++  YI + +  S+   E +V  +   +      I   LA  ++++   
Sbjct: 305 KIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIYNKDIDLELAQRIVRKVVN 364

Query: 245 CD 246
            D
Sbjct: 365 SD 366


>gi|315644300|ref|ZP_07897470.1| chromosomal replication initiation protein [Paenibacillus vortex
           V453]
 gi|315280675|gb|EFU43964.1| chromosomal replication initiation protein [Paenibacillus vortex
           V453]
          Length = 448

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ S    A     +    P++    + L G  G GK+ L +         
Sbjct: 111 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYILEH 170

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I  +      +  + V   L++DI  L   +    + FH
Sbjct: 171 NPSSKVVYISSEKFTNEFINSIRDNRAESFRNKYRSVDILLIDDIQFLAGKESTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 231 TFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKAKA 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  +   YI  +++ ++   E  + ++   +      +T  LAAE LK+
Sbjct: 291 ENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDVTTHLAAEALKD 343


>gi|229100789|ref|ZP_04231609.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           Rock3-28]
 gi|228682628|gb|EEL36685.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           Rock3-28]
          Length = 337

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 3   NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 62

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 63  NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 122

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 123 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 182

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 183 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 235


>gi|296330037|ref|ZP_06872521.1| chromosomal replication initiation protein [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305672699|ref|YP_003864370.1| chromosomal replication initiation protein [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296153076|gb|EFG93941.1| chromosomal replication initiation protein [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305410942|gb|ADM36060.1| chromosomal replication initiation protein [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 446

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKNDQPKNKEE------QLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q  +    K +      +    FP        + D  ++ S    A     +  
Sbjct: 78  FVIPQNQDVEDFMPKPQVKKAVKEDTSDFPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108
             P++    + + G  G GK+ L +         + S    + +  K  +  +   R   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197

Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344


>gi|220927460|ref|YP_002504369.1| chromosomal replication initiation protein [Clostridium
           cellulolyticum H10]
 gi|254777895|sp|B8I3R2|DNAA_CLOCE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|219997788|gb|ACL74389.1| chromosomal replication initiator protein DnaA [Clostridium
           cellulolyticum H10]
          Length = 440

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 93/270 (34%), Gaps = 38/270 (14%)

Query: 6   EDYSFFVPDKQKNDQPKNKEEQ-------LFFSFPRCLGISRDDLLVHSAIEQAVRLIDS 58
            DY+ +      +  P     Q       + F        + D  ++ +    A     +
Sbjct: 73  RDYNIYFA--IPSQTPVKPVAQEYTEDSNMSF---LNPKYTFDTFVIGNGNRFAHAASLA 127

Query: 59  WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98
               P++    + L G  G GK+ L +                   S+K  +   + I  
Sbjct: 128 VAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHFVLSQNPALKVLYVSSEKFTNELINAIRD 187

Query: 99  SLDSIL---IDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
             +            +L++DI  +      + + FH  N++++ +  +++++   P    
Sbjct: 188 DKNEEFRYKYRNIDVLLIDDIQFIGGKERTEEEFFHTFNALYEANKQIIISSDKPPKEIP 247

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR +   +  I+ PD +    ++ K      + +   +  +I  ++  ++   
Sbjct: 248 TLEDRLRSRFEWGLIADIAPPDLETRIAILRKKAQLENLDVPDDVMVFIADKVASNIREL 307

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           E  ++++   +      I   +A E LK+ 
Sbjct: 308 EGALNRVIAYSTLTENIINVDMAVEALKDM 337


>gi|312901296|ref|ZP_07760579.1| replication initiator protein DnaA [Enterococcus faecalis TX0470]
 gi|311291673|gb|EFQ70229.1| replication initiator protein DnaA [Enterococcus faecalis TX0470]
          Length = 447

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + D  ++    + A      +   P      +   G  G GK+ L +    +    
Sbjct: 112 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVN 171

Query: 89  --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128
              +      +++  +  I++                  +L++DI  L   +  L   FH
Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTRTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++  +  +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 232 TFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A   G  IT SLAA+ LK  
Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSL 345


>gi|315125112|ref|YP_004067115.1| DNA replication initiator [Pseudoalteromonas sp. SM9913]
 gi|315013625|gb|ADT66963.1| DNA replication initiator [Pseudoalteromonas sp. SM9913]
          Length = 476

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  +   + + A          P      V + G +G GK+ L +     I ++
Sbjct: 142 KENYTFDSFVEGKSNQLAKAAATQVADNPGSAFNPVFIYGGTGLGKTHLLHAVGNGIMAN 201

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K  +      ++     ++   +   +E+       +D L  +D            + FH
Sbjct: 202 KPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANKERSQEEFFH 261

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      + I  P+ +    +++K    
Sbjct: 262 TFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAILMKKAQQ 321

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +  ++A +I +++  ++   E  ++++   A   G  I+     E L++ 
Sbjct: 322 SKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISIDFVKEALRDL 375


>gi|152973855|ref|YP_001373372.1| chromosomal replication initiation protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189044630|sp|A7GJR9|DNAA_BACCN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|152022607|gb|ABS20377.1| chromosomal replication initiator protein DnaA [Bacillus
           cytotoxicus NVH 391-98]
          Length = 446

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMIYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344


>gi|157690799|ref|YP_001485261.1| chromosomal replication initiation protein [Bacillus pumilus
           SAFR-032]
 gi|167016898|sp|A8F8Y4|DNAA_BACP2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157679557|gb|ABV60701.1| DNA-directed DNA replication initiator protein [Bacillus pumilus
           SAFR-032]
          Length = 446

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 97/267 (36%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKN--DQPKNKEEQL----FFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q      PK+  +++        P        + D  ++ S    A     +  
Sbjct: 78  FIIPQNQDEVEAMPKSPIKKMSKEDPVDIPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108
             P++    + + G  G GK+ L +         + S    + +  K  +  +   R   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197

Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344


>gi|332685535|ref|YP_004455309.1| chromosomal replication initiator protein DnaA [Melissococcus
           plutonius ATCC 35311]
 gi|332369544|dbj|BAK20500.1| chromosomal replication initiator protein DnaA [Melissococcus
           plutonius ATCC 35311]
          Length = 447

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 84/237 (35%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               S D  ++    + A      +   P      +   G  G GK+ L +    +    
Sbjct: 112 NPKYSFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMCLN 171

Query: 89  --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128
              +      +++  +  I++                  +L++DI  L   +  L   FH
Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTKNSEEFRKEYRNVDLLLVDDIQFLAEKEATLEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++  +  +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 232 TFNDLYNDNKQIVLTSDRPPNDIQKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            ++ I     +YI  +++ ++   E  + ++       G  IT SLAA+ LK  +  
Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAYGTINGEDITTSLAADALKSLKSA 348


>gi|325066321|ref|ZP_08124994.1| chromosomal replication initiator protein DnaA [Actinomyces oris
           K20]
          Length = 559

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90
               + D  +  S+   A     +    P+R    + + G SG GK+ L +     +++ 
Sbjct: 213 NPRYTFDTYVTGSSNRFAHATALAVAEAPARAYNPLFIYGGSGLGKTHLLHAIGHYAQTL 272

Query: 91  ------------TRFSNIAKSLDSILIDTRKP------------VLLEDIDLLDFNDTQL 126
                          S+    +     D  +             +L++DI  L   ++ L
Sbjct: 273 NPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQFLQGKESTL 332

Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
              FH  NS+H     +++T+   P + G     L SR +   +  +  PD +    ++ 
Sbjct: 333 EEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDLETRIAILS 392

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +      + +   +  YI  R+  ++   E  + ++   A      + ++LA  VLK+
Sbjct: 393 RKGTAEGLDLPFDVLEYIASRITTNIRELEGALIRVTAFASLNKQPVDQTLAEMVLKD 450


>gi|194016318|ref|ZP_03054932.1| chromosomal replication initiator protein DnaA [Bacillus pumilus
           ATCC 7061]
 gi|194011791|gb|EDW21359.1| chromosomal replication initiator protein DnaA [Bacillus pumilus
           ATCC 7061]
          Length = 446

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 97/267 (36%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKN--DQPKNKEEQL----FFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q      PK+  +++        P        + D  ++ S    A     +  
Sbjct: 78  FIIPQNQDEVEAMPKSPIKKMSKEDPVDIPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108
             P++    + + G  G GK+ L +         + S    + +  K  +  +   R   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197

Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344


>gi|16077069|ref|NP_387882.1| chromosomal replication initiation protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221307810|ref|ZP_03589657.1| chromosomal replication initiation protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221312132|ref|ZP_03593937.1| chromosomal replication initiation protein [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221317065|ref|ZP_03598359.1| chromosomal replication initiation protein [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221321328|ref|ZP_03602622.1| chromosomal replication initiation protein [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321313668|ref|YP_004205955.1| chromosomal replication initiation protein [Bacillus subtilis BSn5]
 gi|118704|sp|P05648|DNAA_BACSU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|40014|emb|CAA26217.1| unnamed protein product [Bacillus subtilis]
 gi|467391|dbj|BAA05237.1| initiation protein of replicaton [Bacillus subtilis]
 gi|2632268|emb|CAB11777.1| chromosomal replication initiator protein DnaA [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291482370|dbj|BAI83445.1| chromosomal replication initiation protein [Bacillus subtilis
           subsp. natto BEST195]
 gi|320019942|gb|ADV94928.1| chromosomal replication initiation protein [Bacillus subtilis BSn5]
          Length = 446

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKNDQPKNKEE------QLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q  +    K +      +    FP        + D  ++ S    A     +  
Sbjct: 78  FVIPQNQDVEDFMPKPQVKKAVKEDTSDFPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108
             P++    + + G  G GK+ L +         + S    + +  K  +  +   R   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197

Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344


>gi|331004666|ref|ZP_08328128.1| chromosomal replication initiator protein DnaA [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330409593|gb|EGG89033.1| chromosomal replication initiator protein DnaA [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 462

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 89/244 (36%), Gaps = 32/244 (13%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSW----PSWPSRVVILVGPSGSGKSCLANIWS- 85
               + D  +V  +       A+ + +S     P        + G  G GK+ L +  + 
Sbjct: 120 DPLYTFDTFVVGKSNDLAHATAIAVAESPGSQNPGEHYNPFFIYGGVGLGKTHLMHSIAH 179

Query: 86  ----------------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123
                           +K  +     +  S         + V   L++DI  +   D   
Sbjct: 180 YILEHNPDSIILYVSSEKFLNEYIDALKNSNLQEYRSKYRNVDVLLIDDIQFIGGKDAIQ 239

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +LFH  N++++    +++++   P+        L SR      V+I  PD +    ++ 
Sbjct: 240 EELFHTFNALYEQKKQIILSSDRPPMELKNLEERLRSRFAWGVAVEIFSPDFETRMAILR 299

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKET 242
                    ID ++  +I   ++ ++   E  ++K+  ++ L++   I   LA  VLK+ 
Sbjct: 300 SKEERDGKNIDNEVIQFIATNIKSNIRMLEGALNKLYAMSRLNKNQEIDIDLAKSVLKDM 359

Query: 243 QQCD 246
              D
Sbjct: 360 ITPD 363


>gi|291536990|emb|CBL10102.1| chromosomal replication initiator protein DnaA [Roseburia
           intestinalis M50/1]
 gi|291539806|emb|CBL12917.1| chromosomal replication initiator protein DnaA [Roseburia
           intestinalis XB6B4]
          Length = 452

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 84/241 (34%), Gaps = 29/241 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V S    A      +   P      + + G  G GK+ L +     I   
Sbjct: 113 NPNYTFDTFVVGSNNRFAQSASLAVAESPGEAYNPLYIYGGPGLGKTHLMHSIGHFILER 172

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND---TQ 125
              +      ++   + +I++ +                   ++++D+  +   +    +
Sbjct: 173 NPNAKVLYVTSEEFTNEVIESIRSGNASAMNKLREKYRTIDVLMVDDVQFIIGKESTQEE 232

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++H     +++T+   P         + SR +   +  I  PD +    ++ + 
Sbjct: 233 FFHTFNALHSAGKQIILTSDKPPKDMETLEDRIRSRFEWGLIADIGTPDYETRMAILRRK 292

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                + +  ++  YI   ++ ++   E  ++K+   +      IT  +A + L+     
Sbjct: 293 VEADDMKLSDEILNYIATNIKSNIRELEGALNKLLAYSNLEKTDITMEIAMKELQNIITP 352

Query: 246 D 246
           D
Sbjct: 353 D 353


>gi|257413825|ref|ZP_04744343.2| DNA replication initiator protein, ATPase [Roseburia intestinalis
           L1-82]
 gi|257202158|gb|EEV00443.1| DNA replication initiator protein, ATPase [Roseburia intestinalis
           L1-82]
          Length = 456

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 84/241 (34%), Gaps = 29/241 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V S    A      +   P      + + G  G GK+ L +     I   
Sbjct: 117 NPNYTFDTFVVGSNNRFAQSASLAVAESPGEAYNPLYIYGGPGLGKTHLMHSIGHFILER 176

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND---TQ 125
              +      ++   + +I++ +                   ++++D+  +   +    +
Sbjct: 177 NPNAKVLYVTSEEFTNEVIESIRSGNASAMNKLREKYRTIDVLMVDDVQFIIGKESTQEE 236

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++H     +++T+   P         + SR +   +  I  PD +    ++ + 
Sbjct: 237 FFHTFNALHSAGKQIILTSDKPPKDMETLEDRIRSRFEWGLIADIGTPDYETRMAILRRK 296

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                + +  ++  YI   ++ ++   E  ++K+   +      IT  +A + L+     
Sbjct: 297 VEADDMKLSDEILNYIATNIKSNIRELEGALNKLLAYSNLEKTDITMEIAMKELQNIITP 356

Query: 246 D 246
           D
Sbjct: 357 D 357


>gi|308066839|ref|YP_003868444.1| Chromosomal replication initiator protein dnaA [Paenibacillus
           polymyxa E681]
 gi|305856118|gb|ADM67906.1| Chromosomal replication initiator protein dnaA [Paenibacillus
           polymyxa E681]
          Length = 451

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 86/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ S    A     +    P++    + L G  G GK+ L +         
Sbjct: 114 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYILEH 173

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   + I  +      +  + +   L++DI  +   +    + FH
Sbjct: 174 NPTSKVVYLSSEKFTNEFINAIRDNRGESFRNKYRNIDILLIDDIQFIAGKESTQEEFFH 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 234 TFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKARA 293

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  +   YI  +++ ++   E  + ++   +      +T  LAAE LK+
Sbjct: 294 ENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDVTSHLAAEALKD 346


>gi|182416749|ref|ZP_02948146.1| chromosomal replication initiator protein DnaA [Clostridium
           butyricum 5521]
 gi|237669665|ref|ZP_04529643.1| chromosomal replication initiator protein DnaA [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182379406|gb|EDT76901.1| chromosomal replication initiator protein DnaA [Clostridium
           butyricum 5521]
 gi|237654899|gb|EEP52461.1| chromosomal replication initiator protein DnaA [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 450

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + +  ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 114 NPKYTFNSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILDN 173

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   + I    +    +  + V   L++DI  +   +    + FH
Sbjct: 174 NPSAKVVYVSSEKFTNELINAIKDDKNEDFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L SR +   +  I +PD +    ++ K    
Sbjct: 234 TFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADV 293

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +  ++  YI  +++ ++   E  + ++   +      +T  LA E LK+
Sbjct: 294 ENLNVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNRDVTVDLATEALKD 346


>gi|222053118|ref|YP_002535480.1| chromosomal replication initiator protein DnaA [Geobacter sp.
           FRC-32]
 gi|254777903|sp|B9M7S1|DNAA_GEOSF RecName: Full=Chromosomal replication initiator protein DnaA
 gi|221562407|gb|ACM18379.1| chromosomal replication initiator protein DnaA [Geobacter sp.
           FRC-32]
          Length = 445

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 98/263 (37%), Gaps = 30/263 (11%)

Query: 5   KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP- 63
           K+       +K +ND  +N    + F+       + D  +  ++ + A     +  + P 
Sbjct: 85  KKKVDLQATEKIENDSTRN----VDFNTNLNPKYTFDSFVCGASNQFAHAASQAVANNPA 140

Query: 64  --SRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------------IAKSLDSI 103
                + + G  G GK+ L     ++ R                          K +D  
Sbjct: 141 CNYNPLFIYGGVGLGKTHLLIAIGNQIRENNKKAKICYYSSEKFMNEMINSLRYKKMDEF 200

Query: 104 LIDTRKP--VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
               RK   +L++DI  +   +    + FH  N++++    +++T+  FP         L
Sbjct: 201 RNKFRKMDILLIDDIQFMAGKEATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERL 260

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SR +   +  I  PD +    ++ K      I +   +A ++      ++   E ++ +
Sbjct: 261 RSRFEWGLIADIQPPDIETKIAILKKKSDLNSITLPNDVALFLASSATSNVRELEGMLIR 320

Query: 219 MDNLALSRGMGITRSLAAEVLKE 241
           +   A   G  I+ ++A ++LK+
Sbjct: 321 LGAYASLTGSEISLNMARDILKD 343


>gi|262373132|ref|ZP_06066411.1| DnaA regulatory inactivator Hda [Acinetobacter junii SH205]
 gi|262313157|gb|EEY94242.1| DnaA regulatory inactivator Hda [Acinetobacter junii SH205]
          Length = 232

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 82/226 (36%), Gaps = 17/226 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D          V  I    +       + G +G+GKS L +   
Sbjct: 2   RQLQLDIEPQLDARISDF-SGPGWGPIVDAIRQLHTGLVSRFYVYGGAGTGKSHLLSAIC 60

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDF---NDTQLFHIINSI 133
           D         I  SL  +L    +          V L+D+D +         +FH++N  
Sbjct: 61  DSYLELNRPAIKVSLLELLDAPIEAITSLEFYDLVALDDVDAICGVPHWQKAVFHLMN-- 118

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIF 192
             ++  L+ ++R  P+   + LPDL SRL  A  VK+         + ++  +   R I 
Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKVPNGSSFIDRQALLQSVMNRRGIH 177

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
            D+++  Y++           + + +++ +       ++ +   ++
Sbjct: 178 FDQQIVDYLLNNGPHQASVLLQTLAQLEKMLKGEKTKLSNTTLKQI 223


>gi|71905643|ref|YP_283230.1| chromosomal replication initiator protein DnaA [Dechloromonas
           aromatica RCB]
 gi|123760693|sp|Q47K71|DNAA_DECAR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|71845264|gb|AAZ44760.1| chromosomal replication initiator protein, DnaA [Dechloromonas
           aromatica RCB]
          Length = 465

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 36  LGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN---------- 82
              + D+L+V  A + A      + + P      + + G +G GK+ L +          
Sbjct: 133 PSFTFDNLVVGKANDLARAAAVQVANNPGGAYNPLFIYGGAGLGKTHLIHAIGNTIATEN 192

Query: 83  -------IWSDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDF---NDTQLFHI 129
                  + ++   S       +        T +    +LL+D+   +    +  + F +
Sbjct: 193 PEKIVRYVHAEDYYSDVVRAYQQKSFDSFKRTYRSLDVLLLDDVQFFNGKNRSQEEFFFL 252

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++ +    +++T  T+P         L +R      V+I  P+ +    ++ K     
Sbjct: 253 FNALIEARKQIIITCDTYPKDINGLDDRLVTRFDWGLTVQIEPPELEMRVAILKKKAEAE 312

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            I +D ++A +I + +  ++   E  + K+   +   G  I   LA E LK+ 
Sbjct: 313 GIQLDDEVAFFIAKHLRSNVRELEGALKKVLAYSSFHGRVIALDLAKEALKDV 365


>gi|261403877|ref|YP_003240118.1| chromosomal replication initiation protein [Paenibacillus sp.
           Y412MC10]
 gi|329925078|ref|ZP_08280022.1| chromosomal replication initiator protein DnaA [Paenibacillus sp.
           HGF5]
 gi|261280340|gb|ACX62311.1| chromosomal replication initiator protein DnaA [Paenibacillus sp.
           Y412MC10]
 gi|328940197|gb|EGG36529.1| chromosomal replication initiator protein DnaA [Paenibacillus sp.
           HGF5]
          Length = 448

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ S    A     +    P++    + L G  G GK+ L +         
Sbjct: 111 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYILEH 170

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I  +      +  + V   L++DI  L   +    + FH
Sbjct: 171 NPSSKVVYISSEKFTNEFINSIRDNRAESFRNKYRNVDILLIDDIQFLAGKESTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 231 TFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKAKA 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  +   YI  +++ ++   E  + ++   +      +T  LAAE LK+
Sbjct: 291 ENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDVTTHLAAEALKD 343


>gi|325130189|gb|EGC52963.1| DnaA regulatory inactivator Hda [Neisseria meningitidis OX99.30304]
          Length = 147

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 108 RKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            + + ++ ++ L   +  L F I N         L+    +     V   DL +R+    
Sbjct: 9   AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCL 68

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           V ++    D      +  M A RQ+ +D ++  Y+++   R +     ++D +DN A++ 
Sbjct: 69  VYEVKPLTDQEKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTM 128

Query: 227 GMGITRSLAAEVLKETQ 243
           G  IT  L  ++LK+ +
Sbjct: 129 GKRITLPLLRQLLKQQE 145


>gi|228994208|ref|ZP_04154108.1| Chromosomal replication initiator protein dnaA [Bacillus
           pseudomycoides DSM 12442]
 gi|228995397|ref|ZP_04155069.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides
           Rock3-17]
 gi|229003011|ref|ZP_04160870.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides
           Rock1-4]
 gi|228758239|gb|EEM07425.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides
           Rock1-4]
 gi|228764350|gb|EEM13225.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides
           Rock3-17]
 gi|228765660|gb|EEM14314.1| Chromosomal replication initiator protein dnaA [Bacillus
           pseudomycoides DSM 12442]
          Length = 446

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344


>gi|118475779|ref|YP_892930.1| chromosomal replication initiation protein [Bacillus thuringiensis
           str. Al Hakam]
 gi|118415004|gb|ABK83423.1| chromosomal replication initiator protein [Bacillus thuringiensis
           str. Al Hakam]
          Length = 465

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 131 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 190

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 191 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 250

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 251 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 310

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 311 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 363


>gi|256419058|ref|YP_003119711.1| chromosomal replication initiator protein DnaA [Chitinophaga
           pinensis DSM 2588]
 gi|256033966|gb|ACU57510.1| chromosomal replication initiator protein DnaA [Chitinophaga
           pinensis DSM 2588]
          Length = 477

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 91/258 (35%), Gaps = 37/258 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  ++       + QL          + +  +       A R   +    P      
Sbjct: 124 FVIPGIKRVQI----DSQL------NPHYTFESYIEGDCNRVARRAGKTVSEKPGGTSFN 173

Query: 67  -VILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTRKPVL------- 112
            +++ G  G GK+ LA    ++      +++  + +  K ++  +  ++  ++       
Sbjct: 174 PLVIYGAVGLGKTHLAQAIGNEVKRIHPNKAVLYVSAEKFINQFIDHSKNSIINDFIHFY 233

Query: 113 -------LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                  ++DI      +      F I N +HQ    L++T+   P         L SR 
Sbjct: 234 QLIDVLIVDDIQFFARAEKTQDAFFAIFNHLHQSGKQLILTSDKPPKDLDGLQERLLSRF 293

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +      + +PD +   +++     +  + + K++  Y+   ++ ++   E  +  +   
Sbjct: 294 RWGLSADMQMPDFETRMEILEMKMRNDGLEMPKEVVKYVAYNIQSNVRELEGALISLLAQ 353

Query: 223 ALSRGMGITRSLAAEVLK 240
           +      I   LA  VLK
Sbjct: 354 SSLNRKEIDLELAKRVLK 371


>gi|254784274|ref|YP_003071702.1| chromosomal replication initiation protein [Teredinibacter turnerae
           T7901]
 gi|259645262|sp|C5BKL9|DNAA_TERTT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|237685666|gb|ACR12930.1| chromosomal replication initiator protein DnaA [Teredinibacter
           turnerae T7901]
          Length = 593

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 79/229 (34%), Gaps = 26/229 (11%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            D+ +V  + +    A   +   P      + + G  G GK+ L +         K  + 
Sbjct: 264 FDNFVVGKSNQLGLAAASQVAENPGGAYNPLFIYGGVGLGKTHLMHAVGNALVQRKPGAR 323

Query: 92  RFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFHIINSI 133
                ++   + ++                    +L++DI      +    + FH  N++
Sbjct: 324 VVYLHSERFVADMVKALQLNAISDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNAL 383

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +    +++T   +P         L SR      V I  P+ +    ++ +     ++ +
Sbjct: 384 LEGGQQIILTCDKYPKEINGLEERLKSRFGWGLTVAIEPPELETRVAILKRKAESSRMPL 443

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               A +I QR+  ++   E  + ++   A      I+  L  E LK+ 
Sbjct: 444 PDDAAFFIAQRIRSNVRELEGALKRVIANAQFTQRSISVELVREALKDL 492


>gi|107098995|ref|ZP_01362913.1| hypothetical protein PaerPA_01000001 [Pseudomonas aeruginosa PACS2]
 gi|296386473|ref|ZP_06875972.1| chromosomal replication initiation protein [Pseudomonas aeruginosa
           PAb1]
          Length = 381

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 50  FTFENFVEGKSNQLARAA--AWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 107

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 108 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 165

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 166 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAE 225

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +I +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 226 QAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDL 280


>gi|290968154|ref|ZP_06559699.1| chromosomal replication initiator protein DnaA [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781829|gb|EFD94412.1| chromosomal replication initiator protein DnaA [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 498

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 85/247 (34%), Gaps = 35/247 (14%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKS 78
             E QL          + D+ +V ++   AV    +    P R     + + G SG GK+
Sbjct: 150 TPENQL------DASYTFDNFIVGNSNRLAVAKAFAVADAPGRKEFNPLYIYGASGLGKT 203

Query: 79  CLANIWSD---------KSRSTRFSNIAKSLDSILIDTR-----------KPVLLEDIDL 118
            L +             + RS    +        + D               +L++DI  
Sbjct: 204 HLMHAIGHRILEKFPHMRLRSITSEDFVNEFIKCIQDKNTESFRRQYRNIDVLLVDDIQF 263

Query: 119 LDFND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           L   D      + FH  N + Q    +++T+   P+        L SR ++ +V  I  P
Sbjct: 264 LGRGDKDSSKEEFFHTFNKLQQDKKQIVLTSDRPPLDIERMEERLRSRFQSGSVAWIDPP 323

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D +    ++        + ID +   YI   +  ++       + +  LA +    +T S
Sbjct: 324 DLETRTAILKTWAEKIHLSIDNESINYIAANVSENIRELSGAFNNIQVLASAEKAPVTLS 383

Query: 234 LAAEVLK 240
           +    ++
Sbjct: 384 MTQRAIR 390


>gi|228942638|ref|ZP_04105170.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228975568|ref|ZP_04136120.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228982204|ref|ZP_04142493.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis Bt407]
 gi|228777556|gb|EEM25834.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis Bt407]
 gi|228784178|gb|EEM32205.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817064|gb|EEM63157.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326937798|gb|AEA13694.1| chromosomal replication initiation [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 446

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 96/267 (35%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKNDQ------PKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q  +        +N  +      P        + D  ++ S    A     +  
Sbjct: 78  FIIPQSQSEEDIDLPPVKRNPAQDDSAHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK--- 109
             P++    + + G  G GK+ L +     +      +      ++   +  I++ +   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNK 197

Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344


>gi|110639382|ref|YP_679591.1| chromosomal replication initiation protein [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110282063|gb|ABG60249.1| chromosomal replication initiator protein DnaA [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 471

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 84/259 (32%), Gaps = 27/259 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVI 68
           P   K  + +                S D  +     + A     +  + P       ++
Sbjct: 111 PGVSKETKQEVPAVSQPIDSQLNASYSFDTFIEGDCNKLARSAGLAVANKPGVTSFNPLL 170

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR-------------------- 108
           + G  G GK+ L     ++ +          + S    ++                    
Sbjct: 171 VYGNVGLGKTHLVQAIGNQIKKNHADKKVLYMPSERFLSQFIEAMKNNQSQEFTNQFLGL 230

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             ++L+D+  L   +      FHI N +HQ    +++T+   P         L SR K  
Sbjct: 231 DVLILDDVQFLSGKEKTQEIFFHIFNHLHQSGKQIIITSDCAPKDIKGLQERLLSRFKWG 290

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
               + +PD +    +I K      I I   +  Y+   ++ ++   E +V+ +      
Sbjct: 291 LSADLQVPDYETRNAIICKKMQFEGIEIAADVIDYLAYSVDTNMRDLEGVVNSLIAQHTL 350

Query: 226 RGMGITRSLAAEVLKETQQ 244
            G  I   LA ++++   Q
Sbjct: 351 SGRQIDLELAKQIIQNIVQ 369


>gi|169627109|ref|YP_001700758.1| chromosomal replication initiation protein [Mycobacterium abscessus
           ATCC 19977]
 gi|226735827|sp|B1MDH6|DNAA_MYCA9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|169239076|emb|CAM60104.1| Chromosomal replication initiator protein DnaA [Mycobacterium
           abscessus]
          Length = 491

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 88/239 (36%), Gaps = 28/239 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + +  ++ ++      A   +   P+     + + G SG GK+ L +  +  
Sbjct: 149 DTSLNARYTFESFVIGASNRFSHAAAVAVSEAPARAYNPLFIWGESGLGKTHLLHA-AGN 207

Query: 88  SRSTRFSNI-----------AKSLDSILIDTRKP----------VLLEDIDLLDFND--- 123
                F  +              ++S+  D R            +L++DI  ++  +   
Sbjct: 208 YAQRLFPGMRVKYVSTEEFTNDFINSLRDDRRVAFKRSYRDIDVLLVDDIQFIEGKEGIQ 267

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++H  +  +++++   P         L +R +   +  +  P+ +    ++ 
Sbjct: 268 EEFFHTFNTLHNANKQIVISSDRPPKGLATLEDRLRTRFEWGLITDVQPPELETRIAILR 327

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           K     ++ +   +   I  R+ER++   E  + ++   A      I  SLA  VL++ 
Sbjct: 328 KKAQMDRLDVPDDVLELIASRIERNIRELEGALIRVTAFASLNKSPIELSLAEIVLRDL 386


>gi|256370825|ref|YP_003108649.1| chromosomal replication initiator protein DnaA [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256007409|gb|ACU52976.1| chromosomal replication initiator protein DnaA [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 458

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + +  ++ S+   A      +   P+     + + G +G GK+ L +   + +R  
Sbjct: 119 DPRYTFEAFVIGSSNRFAHAAALSVAETPARSYNPLFIHGDAGLGKTHLLHAIGNYAREN 178

Query: 92  R-----------------FSNIAKSLDSILIDTRKP---VLLEDIDLLDFND---TQLFH 128
                                I ++  S      +    +L++DI  L+  +    + FH
Sbjct: 179 YPNLLTTYVSTETFLNEFVDAIKRNQTSEFKARYRACDILLVDDIQFLEGKEAIQEEFFH 238

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++T+   P +       L SR     +  +  PD +    ++ +   D
Sbjct: 239 TFNTLYGAQKQIVLTSDRPPRALATLEDRLRSRFAMGLITDVQPPDLETRAAILRRKAED 298

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +   +  +I   +  ++   E  + ++   +     GIT ++A +VL + 
Sbjct: 299 AGVTVPATVIEFIAASITDNIRELEGALTRLAAFSTLSQTGITLTMAEQVLSDL 352


>gi|291561644|emb|CBL40443.1| chromosomal replication initiator protein DnaA [butyrate-producing
           bacterium SS3/4]
          Length = 454

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 85/250 (34%), Gaps = 30/250 (12%)

Query: 27  QLFF-SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN 82
           QL   +       + D  +V      A      +   P      + + G  G GK+ L +
Sbjct: 106 QLALQNANLNPRYTFDTFVVGKNNNLAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMH 165

Query: 83  -----IWSDKSRSTRFSNIAKSLDSILIDT------------------RKPVLLEDIDLL 119
                I  +   +      ++   + LID                      +L++DI  +
Sbjct: 166 SVAHFILKNNPSAKILYVTSEKFTNELIDAIRNKNNVSTTEFREKYRNNDVLLIDDIQFI 225

Query: 120 DFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              +    + FH  N++++    +++++   P         L SR +    V I  PD +
Sbjct: 226 IGKESTQEEFFHTFNALYEAKKQIIISSDRPPREIETLEDRLRSRFEWGLTVDIQPPDYE 285

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               ++ K        ID ++  YI   ++ ++   E  + K+   +      I   LA 
Sbjct: 286 TRMAILRKKEELEGYNIDNEIIKYIATNVKSNIRELEGALTKIVASSKLNNKEINLELAE 345

Query: 237 EVLKETQQCD 246
           E LK+    +
Sbjct: 346 EALKDLISPN 355


>gi|149372330|ref|ZP_01891518.1| chromosomal replication initiator protein [unidentified eubacterium
           SCB49]
 gi|149354720|gb|EDM43283.1| chromosomal replication initiator protein [unidentified eubacterium
           SCB49]
          Length = 476

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 90/260 (34%), Gaps = 37/260 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + ++ L   +   A     +  + P      
Sbjct: 126 FVIPGIRNV----KIESQL------NPNYNFENFLEGESNRLARSAGIAVANKPGGTSFN 175

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 176 PLLVFGSVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFVQQYSESVKKNNRNDFIHFY 235

Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++DI LL          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 236 QIIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMIDIEQRLLSRF 295

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     +++ PD D    +I        + +   +  ++   ++ ++   E  +  +   
Sbjct: 296 KWGLSAELNHPDYDTRVAIIQNKLYRDGVEMPDDIVEFLANNIKTNIRELEGAIISLIAH 355

Query: 223 ALSRGMGITRSLAAEVLKET 242
           +      IT  LA +++   
Sbjct: 356 SSFNKKEITIDLAKKIVDNY 375


>gi|159896534|ref|YP_001542781.1| chromosomal replication initiation protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|226735818|sp|A9B496|DNAA_HERA2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|159889573|gb|ABX02653.1| chromosomal replication initiator protein DnaA [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 472

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 88/247 (35%), Gaps = 31/247 (12%)

Query: 27  QLFFSFPRC-----LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKS 78
           QL    P          +    +V ++   A     +    P++    + L G  G GK+
Sbjct: 120 QLPLGDPNRSSVLNPRYTFSSFIVGTSNRLAHAACMAVAEHPAQAYNPLFLYGGVGLGKT 179

Query: 79  CLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDL 118
            L          R+   + +  S +    D    +                  L++DI  
Sbjct: 180 HLLQAIGNYALDRNPEVNVLYVSSEKFTNDLINAIRRQQTEEFRIRYRNIDILLIDDIQF 239

Query: 119 LDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           +   +    + FH  N++H     +++++   P +       L SR +   +V +  PD 
Sbjct: 240 IAGKEGTQEEFFHTFNTLHGAGKQIVLSSDRPPKAILTLEERLRSRFEWGLIVDVQNPDL 299

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           +    ++       Q+ +  ++  ++ QR++ ++   E  ++++   A      +T  +A
Sbjct: 300 ETRTAILRAKGETLQVPVSSEVIDFLAQRIQSNIRELEGCLNRVIAYANLNRTPVTVEVA 359

Query: 236 AEVLKET 242
           +  L + 
Sbjct: 360 SAALADL 366


>gi|329944740|ref|ZP_08292819.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328529876|gb|EGF56766.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 380

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90
               + D  +  S+   A     +    P+R    + + G SG GK+ L +     +++ 
Sbjct: 34  NPRYTFDTYVTGSSNRFAHATALAVAEAPARAYNPLFIYGGSGLGKTHLLHAVGHYAQTL 93

Query: 91  ------------TRFSNIAKSLDSILIDTRKP------------VLLEDIDLLDFNDTQL 126
                          S+    +     D  +             +L++DI  L   ++ L
Sbjct: 94  NPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQFLQGKESTL 153

Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
              FH  NS+H     +++T+   P + G     L SR +   +  +  PD +    ++ 
Sbjct: 154 EEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDLETRIAILS 213

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +      + +   +  YI  R+  ++   E  + ++   A      + ++LA  VLK+
Sbjct: 214 RKGTAEGLDLPFDVLEYIASRITTNIRELEGALIRVTAFASLNKQPVDQTLAEMVLKD 271


>gi|226952106|ref|ZP_03822570.1| DnaA family chromosomal replication initiator [Acinetobacter sp.
           ATCC 27244]
 gi|294651081|ref|ZP_06728418.1| DnaA-type chromosomal replication initiator [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226837162|gb|EEH69545.1| DnaA family chromosomal replication initiator [Acinetobacter sp.
           ATCC 27244]
 gi|292823030|gb|EFF81896.1| DnaA-type chromosomal replication initiator [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 232

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 21/228 (9%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            QL       L     D          V  +    +     + + G +G+GKS L +   
Sbjct: 2   RQLQLDIEPQLDARISDF-SGPGWGPVVDAVRQLHTGLVSRLYIYGGAGTGKSHLLSAIC 60

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDF---NDTQLFHIINSI 133
           D         I  SL ++L    +          V L+DID +         +FH++N  
Sbjct: 61  DSYLELGRPAIKVSLLALLDAPIEAITALEFYDLVALDDIDAISGVPHWQKAVFHLMN-- 118

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD---FLEKVIVKMFADRQ 190
             ++  L+ ++R  P+   + LPDL SRL  A  VK   P+       + ++  +   R 
Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVK--APNGSSFVDRQALLQSVMTRRG 175

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           I  D+++  Y++           + + +++ +       ++ +   ++
Sbjct: 176 IHFDQQIVDYLLHNGPHQASILLQTLAQLEKMLKGEKTKLSNTTLKQI 223


>gi|229824635|ref|ZP_04450704.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271]
 gi|229786006|gb|EEP22120.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271]
          Length = 461

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 29/231 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               +  + ++  A + A      +   P       ++ G  G GK+ L       I S 
Sbjct: 127 NPNYTFSNFVIGEANKMAHAAALTVCDAPGETYNPYLIYGGVGLGKTHLMQAIGNEILSR 186

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           +  +       +S  +  I   +   +E+       ID+L  +D            + FH
Sbjct: 187 QPHAKIKYATTESFTNDFITALEKNTIEEFRHMYRKIDVLLIDDIQFLSNKNKTREEFFH 246

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++ +   ++MT    P S       L SR      + I+ PD +    ++ K  ++
Sbjct: 247 TFNELYNHGKQIVMTCDRLPSSLSGLEDRLISRFAWGLQIDITPPDFETRIAILRKKASN 306

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                      YI   +  ++   E  + ++   A      IT +LAAE L
Sbjct: 307 ---EFSADTLQYIASHVNTNIRELEGALTRVTAYATIHNREITTNLAAEAL 354


>gi|332533700|ref|ZP_08409559.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036864|gb|EGI73325.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 460

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  +   + + A          P      V + G +G GK+ L +     I ++
Sbjct: 126 KENYTFDSFVEGKSNQLAKAAATQVADNPGSAFNPVFIYGGTGLGKTHLLHAVGNGIMAN 185

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K  +      ++     ++   +   +E+       +D L  +D            + FH
Sbjct: 186 KPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANKERSQEEFFH 245

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      + I  P+ +    +++K    
Sbjct: 246 TFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAILMKKAQQ 305

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +  ++A +I +++  ++   E  ++++   A   G  I+     E L++ 
Sbjct: 306 SKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISIDFVKEALRDL 359


>gi|89891636|ref|ZP_01203140.1| chromosomal DNA replication initiator DnaA [Flavobacteria bacterium
           BBFL7]
 gi|89516183|gb|EAS18846.1| chromosomal DNA replication initiator DnaA [Flavobacteria bacterium
           BBFL7]
          Length = 475

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 90/260 (34%), Gaps = 37/260 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + D  L   +   A     +  + P      
Sbjct: 125 FIIPGIRNV----KIESQL------NPSYNFDSFLEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVGIKENYPDKTALYISAEKFTQQYIESVRKNNRNDFIHFY 234

Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + V   +++DI             FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QIVDVLIVDDIQFFAGKASTQDVFFHIFNHLHQNGKQVILTSDKKPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     +++ PD +    +I        + +D  +  Y+   ++ ++   E  +  +   
Sbjct: 295 KWGLSAELNHPDYETRVSIIKNKLYRDGVEMDDDIIHYLADNIKTNIRELEGAIISLIAH 354

Query: 223 ALSRGMGITRSLAAEVLKET 242
           +      IT  LA ++++  
Sbjct: 355 SSFNRKDITIDLARKIVENY 374


>gi|229118979|ref|ZP_04248324.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           Rock1-3]
 gi|228664504|gb|EEL20000.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           Rock1-3]
          Length = 446

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344


>gi|255283813|ref|ZP_05348368.1| DNA replication initiator protein, ATPase [Bryantella formatexigens
           DSM 14469]
 gi|255265696|gb|EET58901.1| DNA replication initiator protein, ATPase [Bryantella formatexigens
           DSM 14469]
          Length = 449

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 75/244 (30%), Gaps = 35/244 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
               + D  +V      A      +   P      + + G  G GK+ L +  +      
Sbjct: 111 NPRYTFDTFVVGKNNNFAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMHSIAHFILER 170

Query: 87  ------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQ 125
                                    +N A S       +   +L++DI  +   +    +
Sbjct: 171 NPDTKVLYVTSETFTNEVIENIRSGNNTAMSKFREKYRSIDVLLIDDIQFIIGKESTQEE 230

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N +H     +++++   P         L SR +   +  IS PD +    ++ K 
Sbjct: 231 FFHTFNDLHSSGKQIIISSDKPPKEMSTLEERLKSRFEWGLIADISSPDYETRMAILRKR 290

Query: 186 FADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                  ID  +  YI   ++   R L  A  +V    NL       I    A E LK  
Sbjct: 291 EELDGYHIDDDVIQYIATNIKSNIRELEGALNIVVAFGNL---NKRKIDLESAKEALKNI 347

Query: 243 QQCD 246
              D
Sbjct: 348 ISPD 351


>gi|15616642|ref|NP_239854.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|219681401|ref|YP_002467786.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219681957|ref|YP_002468341.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471074|ref|ZP_05635073.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|11132243|sp|P57128|DNAA_BUCAI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777890|sp|B8D8H7|DNAA_BUCA5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777891|sp|B8D6T1|DNAA_BUCAT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|25299844|pir||D84931 chromosomal replication initiator protein dnaA [imported] -
           Buchnera sp. (strain APS)
 gi|10038705|dbj|BAB12740.1| chromosomal replication initiator protein dnaA [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|219621690|gb|ACL29846.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624244|gb|ACL30399.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311085762|gb|ADP65844.1| chromosomal replication initiation protein [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
 gi|311086339|gb|ADP66420.1| chromosomal replication initiation protein [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
 gi|311086914|gb|ADP66994.1| chromosomal replication initiation protein [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
 gi|311087505|gb|ADP67584.1| chromosomal replication initiation protein [Buchnera aphidicola
           str. JF98 (Acyrthosiphon pisum)]
          Length = 454

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 84/231 (36%), Gaps = 26/231 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             +  + +   + + A          P      + L G +G GK+ L +   ++  S ++
Sbjct: 122 RYNFQNFVEGKSNQLARSAAFQAARNPGNSYNPLFLYGATGLGKTHLLHAIGNEILSYKY 181

Query: 94  S--------------------NIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHII 130
                                N A     +   +   +L++DI      +    + FH  
Sbjct: 182 DIKIIFMNSECFVQDMVKALKNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQEEFFHTF 241

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++ + +  +++T+  +P         L SR      + I  P+ +    +++K      
Sbjct: 242 NTLIEGNQQIILTSDRYPKEINGVEDRLKSRFSWGLTIAIDPPEIETRVAILIKKADQNN 301

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +  ++A +I + +  ++   E  ++++   +      IT   A E L++
Sbjct: 302 VILSNEVAFFIAKHLRSNVRELEGALNRVILNSRFTHRAITVDFAREALQD 352


>gi|220933194|ref|YP_002512093.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219994504|gb|ACL71106.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 455

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 90/251 (35%), Gaps = 28/251 (11%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSG 74
           + +P     Q   +       + D+ +   + + A        +        + L G  G
Sbjct: 106 SHRPAASSAQFTNNL--NPNFTFDNFVEGKSNQLARAASLQVAANVGLAYNPLFLYGGVG 163

Query: 75  SGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLE 114
            GK+ L +     I + +  +           +++ K+L    ID       +   +L++
Sbjct: 164 LGKTHLMHAIGNAILAHRPGAKVVYLHSERFVADMIKALQHNAIDEFKGYYRSVDALLID 223

Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DI      +    + FH  N++ +    +++T   +P         L SR      V I 
Sbjct: 224 DIQFFAGKERSQEEFFHTFNALLESQQQVILTCDRYPKEVDGLEERLKSRFGWGLTVAIE 283

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            P+ +    ++ +        +  ++A ++ +R+  ++   E  + ++   A   G  IT
Sbjct: 284 PPELETRVAILQRKAEQANTELPSEVAFFMAKRIRSNIRELEGALRRVVANAHFTGRPIT 343

Query: 232 RSLAAEVLKET 242
              A E L++ 
Sbjct: 344 LDFAKEALRDL 354


>gi|75761786|ref|ZP_00741721.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74490719|gb|EAO54000.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 447

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 96/267 (35%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKNDQ------PKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q  +        +N  +      P        + D  ++ S    A     +  
Sbjct: 97  FIIPQSQAEEDIDLPPVKRNPAQDDSAHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 156

Query: 61  SWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK--- 109
             P++    + + G  G GK+ L +     +      +      ++   +  I++ +   
Sbjct: 157 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNK 216

Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 217 AVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTL 276

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 277 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 336

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 337 ALIRVVAYSSLINKDINADLAAEALKD 363


>gi|311032256|ref|ZP_07710346.1| chromosomal replication initiation protein [Bacillus sp. m3-13]
          Length = 448

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 96/255 (37%), Gaps = 30/255 (11%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69
           P K K D    +  Q   +       + D  ++ S    A     +    P++    + +
Sbjct: 95  PAKVKKDDDMIEIPQNMLN----PKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFI 150

Query: 70  VGPSGSGKSCLANIWS----DKSRSTRFSNIAKS----------LDSILIDTRK------ 109
            G  G GK+ L +       + + + +   ++             D+  +D R       
Sbjct: 151 YGGVGLGKTHLMHAIGHYVIEHNPAAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVD 210

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI  L   +    + FH  N++H+    +++++   P         L SR +   
Sbjct: 211 VLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGL 270

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E  + ++   +   
Sbjct: 271 ITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLI 330

Query: 227 GMGITRSLAAEVLKE 241
              I   LAAE LK+
Sbjct: 331 NKDINADLAAEALKD 345


>gi|229164440|ref|ZP_04292368.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           R309803]
 gi|228619045|gb|EEK75943.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           R309803]
          Length = 446

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344


>gi|218895142|ref|YP_002443553.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           G9842]
 gi|228905433|ref|ZP_04069388.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis IBL 4222]
 gi|228911329|ref|ZP_04075133.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis IBL 200]
 gi|229193740|ref|ZP_04320681.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           ATCC 10876]
 gi|226735775|sp|B7IS20|DNAA_BACC2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|218545184|gb|ACK97578.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           G9842]
 gi|228589765|gb|EEK47643.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           ATCC 10876]
 gi|228848347|gb|EEM93197.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis IBL 200]
 gi|228854253|gb|EEM98956.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis IBL 4222]
          Length = 446

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 96/267 (35%), Gaps = 35/267 (13%)

Query: 10  FFVPDKQKNDQ------PKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q  +        +N  +      P        + D  ++ S    A     +  
Sbjct: 78  FIIPQSQAEEDIDLPPVKRNPAQDDSAHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK--- 109
             P++    + + G  G GK+ L +     +      +      ++   +  I++ +   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNK 197

Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I   LAAE LK+
Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344


>gi|294619745|ref|ZP_06699150.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E1679]
 gi|291594015|gb|EFF25484.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E1679]
          Length = 444

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW-----SD 86
               + D  ++    + A      +   P      +   G  G GK+ L +         
Sbjct: 109 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQS 168

Query: 87  KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128
           +  +      +++  +  I++                  +L++DI      +    + FH
Sbjct: 169 QPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++T+   P         L SR      V I+ PD +    ++ K  A 
Sbjct: 229 TFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAA 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A      I+ SLAA+ LK  
Sbjct: 289 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDISTSLAADALKTL 342


>gi|85857846|ref|YP_460048.1| chromosomal replication initiator protein [Syntrophus
           aciditrophicus SB]
 gi|85720937|gb|ABC75880.1| chromosomal replication initiator protein [Syntrophus
           aciditrophicus SB]
          Length = 457

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDKSRS- 90
               S +  +V S+ + A     +    P      + + G  G GK+ L N     S S 
Sbjct: 120 NPNYSFERFVVGSSNQFAHAAAVAVAEQPAKNYNPLFIYGGVGLGKTHLLNAIGLLSMSI 179

Query: 91  -----TRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFH 128
                  + +  + ++ +++  R                +L++DI  +   +    + FH
Sbjct: 180 YPDMNVVYVSAEEFMNELILSIRYDKMPQFREKFRNIDCLLMDDIQFIAGKERTQEEFFH 239

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     +++T+  FP         L SR +   +  I  P+ +    ++ K   +
Sbjct: 240 TFNTLHDSGKQIVVTSDKFPKDIPNLEGRLRSRFEWGLIADIQPPEIETKIAILEKKAQE 299

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I I   +A YI    E ++   E  + ++   +   G  I   L  EVLK+
Sbjct: 300 NNIHIPTNVAYYISSHAESNIRELEGFLVRIAAYSSVTGRNIDLDLVKEVLKD 352


>gi|69246706|ref|ZP_00604074.1| chromosomal replication initiator protein, DnaA [Enterococcus
           faecium DO]
 gi|257878646|ref|ZP_05658299.1| chromosomal replication initiator protein [Enterococcus faecium
           1,230,933]
 gi|257881312|ref|ZP_05660965.1| chromosomal replication initiator protein [Enterococcus faecium
           1,231,502]
 gi|257885587|ref|ZP_05665240.1| chromosomal replication initiator protein [Enterococcus faecium
           1,231,501]
 gi|257890529|ref|ZP_05670182.1| chromosomal replication initiator protein [Enterococcus faecium
           1,231,410]
 gi|257893104|ref|ZP_05672757.1| chromosomal replication initiator protein [Enterococcus faecium
           1,231,408]
 gi|258615270|ref|ZP_05713040.1| chromosomal replication initiation protein [Enterococcus faecium
           DO]
 gi|260558227|ref|ZP_05830423.1| chromosomal replication initiator protein [Enterococcus faecium
           C68]
 gi|261206917|ref|ZP_05921606.1| chromosomal replication initiator protein [Enterococcus faecium TC
           6]
 gi|289566506|ref|ZP_06446930.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium D344SRF]
 gi|293553547|ref|ZP_06674174.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E1039]
 gi|293563251|ref|ZP_06677703.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E1162]
 gi|293569159|ref|ZP_06680465.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E1071]
 gi|294616659|ref|ZP_06696430.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E1636]
 gi|294623759|ref|ZP_06702587.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium U0317]
 gi|314940131|ref|ZP_07847311.1| replication initiator protein DnaA [Enterococcus faecium TX0133a04]
 gi|314943038|ref|ZP_07849842.1| replication initiator protein DnaA [Enterococcus faecium TX0133C]
 gi|314948156|ref|ZP_07851552.1| replication initiator protein DnaA [Enterococcus faecium TX0082]
 gi|314953430|ref|ZP_07856348.1| replication initiator protein DnaA [Enterococcus faecium TX0133A]
 gi|314993831|ref|ZP_07859167.1| replication initiator protein DnaA [Enterococcus faecium TX0133B]
 gi|314998144|ref|ZP_07863026.1| replication initiator protein DnaA [Enterococcus faecium TX0133a01]
 gi|68195120|gb|EAN09579.1| chromosomal replication initiator protein, DnaA [Enterococcus
           faecium DO]
 gi|257812874|gb|EEV41632.1| chromosomal replication initiator protein [Enterococcus faecium
           1,230,933]
 gi|257816970|gb|EEV44298.1| chromosomal replication initiator protein [Enterococcus faecium
           1,231,502]
 gi|257821443|gb|EEV48573.1| chromosomal replication initiator protein [Enterococcus faecium
           1,231,501]
 gi|257826889|gb|EEV53515.1| chromosomal replication initiator protein [Enterococcus faecium
           1,231,410]
 gi|257829483|gb|EEV56090.1| chromosomal replication initiator protein [Enterococcus faecium
           1,231,408]
 gi|260075401|gb|EEW63707.1| chromosomal replication initiator protein [Enterococcus faecium
           C68]
 gi|260078545|gb|EEW66247.1| chromosomal replication initiator protein [Enterococcus faecium TC
           6]
 gi|289161715|gb|EFD09591.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium D344SRF]
 gi|291588128|gb|EFF19970.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E1071]
 gi|291590479|gb|EFF22217.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E1636]
 gi|291596713|gb|EFF27936.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium U0317]
 gi|291602302|gb|EFF32527.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E1039]
 gi|291604790|gb|EFF34272.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E1162]
 gi|313587856|gb|EFR66701.1| replication initiator protein DnaA [Enterococcus faecium TX0133a01]
 gi|313591722|gb|EFR70567.1| replication initiator protein DnaA [Enterococcus faecium TX0133B]
 gi|313594533|gb|EFR73378.1| replication initiator protein DnaA [Enterococcus faecium TX0133A]
 gi|313598238|gb|EFR77083.1| replication initiator protein DnaA [Enterococcus faecium TX0133C]
 gi|313640636|gb|EFS05216.1| replication initiator protein DnaA [Enterococcus faecium TX0133a04]
 gi|313645410|gb|EFS09990.1| replication initiator protein DnaA [Enterococcus faecium TX0082]
          Length = 444

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW-----SD 86
               + D  ++    + A      +   P      +   G  G GK+ L +         
Sbjct: 109 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQS 168

Query: 87  KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128
           +  +      +++  +  I++                  +L++DI      +    + FH
Sbjct: 169 QPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++T+   P         L SR      V I+ PD +    ++ K  A 
Sbjct: 229 TFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAA 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A      I+ SLAA+ LK  
Sbjct: 289 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDISTSLAADALKTL 342


>gi|42779082|ref|NP_976329.1| chromosomal replication initiation protein [Bacillus cereus ATCC
           10987]
 gi|206975777|ref|ZP_03236688.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           H3081.97]
 gi|217957582|ref|YP_002336124.1| chromosomal replication initiation protein [Bacillus cereus AH187]
 gi|222093775|ref|YP_002527822.1| chromosomal replication initiation protein [Bacillus cereus Q1]
 gi|229142238|ref|ZP_04270762.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           BDRD-ST26]
 gi|229199687|ref|ZP_04326330.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           m1293]
 gi|61212644|sp|Q73FK5|DNAA_BACC1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735777|sp|B7HPR7|DNAA_BACC7 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777886|sp|B9IYG8|DNAA_BACCQ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|42734997|gb|AAS38937.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           ATCC 10987]
 gi|206745871|gb|EDZ57267.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           H3081.97]
 gi|217064344|gb|ACJ78594.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           AH187]
 gi|221237820|gb|ACM10530.1| chromosomal replication initiator protein DnaA [Bacillus cereus Q1]
 gi|228583782|gb|EEK41957.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           m1293]
 gi|228641256|gb|EEK97563.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           BDRD-ST26]
 gi|324323995|gb|ADY19255.1| chromosomal replication initiation protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 446

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344


>gi|229035147|ref|ZP_04189093.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH1271]
 gi|228728213|gb|EEL79243.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH1271]
          Length = 446

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344


>gi|288801133|ref|ZP_06406589.1| DNA replication initiator protein, ATPase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288332067|gb|EFC70549.1| DNA replication initiator protein, ATPase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 471

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 77/234 (32%), Gaps = 27/234 (11%)

Query: 40  RDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCL-----ANIWSDKSRS 90
            D  +   +   A+     + +         + L GPSG GK+ L       I       
Sbjct: 137 FDSFIRGESNAVALSVSLSIAEHPTRRQFNPMFLFGPSGCGKTHLINAIGLRIAKLYENK 196

Query: 91  TRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FHIINS 132
                 AK  +      +                 ++++DI         L   F+I N 
Sbjct: 197 KVLYVSAKDFEVQYTSAQYTNKINDFMHFYQNIDVLIVDDIQSWAGKKKTLETFFYIFNH 256

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++     P         L +R     V ++  P+      ++        + 
Sbjct: 257 LFRNGKRIILACDRPPAELEGMEERLLTRFVWGVVEELGKPNIQLCIDILKSKVKRDGLS 316

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           I   +  YI +R   S+ + E +++ +   +++ G  I  + A E +K+  + D
Sbjct: 317 IPDDVIRYIAERANGSIRYLEGVINTLYAFSINLGREIDIAFADERIKKLVKID 370


>gi|120401029|ref|YP_950858.1| chromosomal replication initiation protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|166214685|sp|A1T102|DNAA_MYCVP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|119953847|gb|ABM10852.1| chromosomal replication initiator protein DnaA [Mycobacterium
           vanbaalenii PYR-1]
          Length = 494

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 88/232 (37%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--- 90
             + D  ++ ++   A      I   P+     + + G SG GK+ L +   + ++    
Sbjct: 158 RYTFDTFVIGASNRFAHAASLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFP 217

Query: 91  ------TRFSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFHII 130
                            + L D R+            +L++DI  ++  D    + FH  
Sbjct: 218 GMRVKYVSTEEFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGIQEEFFHTF 277

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     +
Sbjct: 278 NTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDR 337

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +   +   I  R+ER++   E  + ++   A      I +SLA  VL++ 
Sbjct: 338 LDVPGDVLELIASRIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDL 389


>gi|326335802|ref|ZP_08201982.1| replication initiation protein DnaA [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692041|gb|EGD34000.1| replication initiation protein DnaA [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 475

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR- 89
               + D+ +   +   A      +           + + G  G GK+ LA+   ++ + 
Sbjct: 139 NPNKNFDNFIEGESNRLARSAGMAITQRPGGTSFNPLFIFGGVGLGKTHLAHAIGNEIQE 198

Query: 90  -------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQLF 127
                              +    N  ++           ++++++             F
Sbjct: 199 KFPKKKILYIEAEDFTKQYAVAAKNNNRTDFIHFYQQIDVLIIDNVQFFASKQGTQDVFF 258

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            I N +HQ    L++T+   PV        L SR K     ++  PD    + ++  +  
Sbjct: 259 QIFNHLHQNGKQLILTSDKAPVDIQDVEQRLLSRFKWGLSAELQAPDYQMRKNILNSILY 318

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              + + +++  YI Q ++ ++   E +   +   AL     IT  LA + + +
Sbjct: 319 RDGVEMSEEIVDYIAQNVKTNIRELEGVNTSLMAEALFNKKEITLDLAKKAVDK 372


>gi|229099916|ref|ZP_04230839.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           Rock3-29]
 gi|228683531|gb|EEL37486.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           Rock3-29]
          Length = 446

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLISKDINADLAAEALKD 344


>gi|148927276|ref|ZP_01810846.1| chromosomal replication initiator protein DnaA [candidate division
           TM7 genomosp. GTL1]
 gi|147887335|gb|EDK72789.1| chromosomal replication initiator protein DnaA [candidate division
           TM7 genomosp. GTL1]
          Length = 486

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 83/222 (37%), Gaps = 27/222 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI------WS 85
               + +  +V S  + A     +    P R    + + G  G GK+ L          +
Sbjct: 153 NPRYTFETYIVGSNNDLAYAACQAVAKSPGRKYNPIFIYGGVGLGKTHLIQAVGNEIAHT 212

Query: 86  DKSRSTRFSNIAKSLDSIL-------------IDTRKPVLLEDIDLLDFND---TQLFHI 129
           D++    + N    ++  L                   ++++DI  +   +    + FH 
Sbjct: 213 DRAARILYVNTETFVNEFLEYIRFKKKGFSDRYRNVDVLIIDDIQFIAGKEKTQEEFFHT 272

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +HQ +  +++++   P S       L SR +    + I +PD +    +I    +  
Sbjct: 273 FNVLHQANKQIIISSDKPPRSIPTLTERLRSRFEWGMAIDIQIPDFETRSAIIETKASQA 332

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            I + ++   Y+   ++ ++   E  ++++  LA     G+T
Sbjct: 333 GIELPRETVEYMASNIKTNIRELEGALNQL--LAFCEMRGVT 372


>gi|119475236|ref|ZP_01615589.1| chromosomal replication initiation protein [marine gamma
           proteobacterium HTCC2143]
 gi|119451439|gb|EAW32672.1| chromosomal replication initiation protein [marine gamma
           proteobacterium HTCC2143]
          Length = 479

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 79/233 (33%), Gaps = 26/233 (11%)

Query: 36  LGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDK 87
              + D  +   + + A      +          + L G  G GK+ L +     I   K
Sbjct: 146 ENYTFDTFVEGKSNQLARAASIQVAENTGGAYNPLFLYGGVGLGKTHLMHAVGNAIIQRK 205

Query: 88  SRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFHI 129
             +      ++   + ++                    +L++DI      +    + FH 
Sbjct: 206 PNAKVVYLHSERFVADMVKALQLNAINEFKRYYRSVDALLIDDIQFFAGKERSQEEFFHT 265

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++ +    +++T   +P         L SR      V +  P+ +    +++K     
Sbjct: 266 FNALLEGGQQMILTCDRYPKEINGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 325

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +I +    A +I QR+  ++   E  + ++   A   G  I   L  E LK+ 
Sbjct: 326 KIELPADAAFFIAQRIRSNVRELEGALKRVIASAHFMGREIDIELIRESLKDL 378


>gi|160878163|ref|YP_001557131.1| chromosomal replication initiator protein DnaA [Clostridium
           phytofermentans ISDg]
 gi|226735795|sp|A9KPP1|DNAA_CLOPH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|160426829|gb|ABX40392.1| chromosomal replication initiator protein DnaA [Clostridium
           phytofermentans ISDg]
          Length = 453

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 28/240 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V +    A      +   P+     + + G  G GK+ L +     I   
Sbjct: 114 NPRYTFDTFVVGANNNLAHAASLAVAESPAEIYNPLFIYGGVGLGKTHLMHSIAHYILEQ 173

Query: 87  KSRSTRFSNIAKSLDSILIDTRK-----------------PVLLEDIDLLDFND---TQL 126
              S      ++   + LI++ +                  +L++DI  +   +    + 
Sbjct: 174 NPNSKVLYVTSEKFTNELIESIRNADTTPTEFREKYRNIDVLLIDDIQFIIGKERTQEEF 233

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++H+    +++++   P         L SR +    V I  PD +    ++ K  
Sbjct: 234 FHTFNTLHESKKQIIISSDKPPKDILTLEERLRSRFEWGLTVDIQSPDYETRMAILKKKE 293

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
               + ID ++  YI   ++ ++   E  + K+  L+  +   +   LA E LK+    D
Sbjct: 294 ELDCLTIDDEVMKYIASNIKSNIRELEGALTKIVALSRLKKKEVDVILAEEALKDLISPD 353


>gi|227550640|ref|ZP_03980689.1| DNA-directed DNA replication initiator protein [Enterococcus
           faecium TX1330]
 gi|257888095|ref|ZP_05667748.1| chromosomal replication initiator protein [Enterococcus faecium
           1,141,733]
 gi|257896287|ref|ZP_05675940.1| chromosomal replication initiator protein [Enterococcus faecium
           Com12]
 gi|257899271|ref|ZP_05678924.1| chromosomal replication initiator protein [Enterococcus faecium
           Com15]
 gi|293379368|ref|ZP_06625512.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium PC4.1]
 gi|293572718|ref|ZP_06683682.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E980]
 gi|227180241|gb|EEI61213.1| DNA-directed DNA replication initiator protein [Enterococcus
           faecium TX1330]
 gi|257824149|gb|EEV51081.1| chromosomal replication initiator protein [Enterococcus faecium
           1,141,733]
 gi|257832852|gb|EEV59273.1| chromosomal replication initiator protein [Enterococcus faecium
           Com12]
 gi|257837183|gb|EEV62257.1| chromosomal replication initiator protein [Enterococcus faecium
           Com15]
 gi|291607210|gb|EFF36568.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium E980]
 gi|292641891|gb|EFF60057.1| chromosomal replication initiator protein DnaA [Enterococcus
           faecium PC4.1]
          Length = 444

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW-----SD 86
               + D  ++    + A      +   P      +   G  G GK+ L +         
Sbjct: 109 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQS 168

Query: 87  KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128
           +  +      +++  +  I++                  +L++DI      +    + FH
Sbjct: 169 QPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++T+   P         L SR      V I+ PD +    ++ K  A 
Sbjct: 229 TFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAA 288

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A      I+ SLAA+ LK  
Sbjct: 289 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDISTSLAADALKTL 342


>gi|301051742|ref|YP_003789953.1| chromosomal replication initiation protein [Bacillus anthracis CI]
 gi|300373911|gb|ADK02815.1| chromosomal replication initiation protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 446

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344


>gi|149198967|ref|ZP_01876008.1| chromosomal replication initiation protein [Lentisphaera araneosa
           HTCC2155]
 gi|149137962|gb|EDM26374.1| chromosomal replication initiation protein [Lentisphaera araneosa
           HTCC2155]
          Length = 470

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 94/253 (37%), Gaps = 32/253 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGP 72
           ++      KE +   +FP     S  + +V  +   A      +   P +    + + G 
Sbjct: 116 RRRSTETPKELKAPNNFPSSDRYSFKNFVVGDSNRLAFATSKAVSESPGFSFNPLFIYGS 175

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE---------------DID 117
           SG GKS L +  + ++      N    ++ +  +    + ++               ++D
Sbjct: 176 SGLGKSHLLHAIAQET---LSHNPYHRIEYLSAEEFSNIFIDSIKNQDGHNFRKRFRNVD 232

Query: 118 LLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           +L  +D            + FH  N+++  +  +++T+   P         L SR +   
Sbjct: 233 ILLLDDVQFLKNKTKTQEEFFHTFNALYSLNKQIVLTSDCQPHELDGLEKRLVSRFEHGQ 292

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +V +  P+ +    ++        + I  ++  +I   ++  +   E  + ++   A + 
Sbjct: 293 IVDVLKPEFETRVAILRLKRDSMNVHIPNEVLDFIASNIKSHIRKLEGALVRLVTYASTM 352

Query: 227 GMGITRSLAAEVL 239
           G  +  SLA EVL
Sbjct: 353 GYEVNVSLAREVL 365


>gi|332978505|gb|EGK15216.1| regulatory inactivation of DnaA Hda protein [Psychrobacter sp.
           1501(2011)]
          Length = 270

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 74/206 (35%), Gaps = 14/206 (6%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL  +       S  D          V  +          + + G + +GK+ L +   +
Sbjct: 4   QLSLNLEVRRDASLSDF-SGPGWSTLVDAVRQLHVGLIGQMYIYGSAATGKTHLLSAICE 62

Query: 87  KSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134
                  S I  SL  +L         +++   V ++D++ +  N      +FH+IN   
Sbjct: 63  SYMEMDKSAICLSLKELLNTDVGVLASLESFDLVAIDDLEAIRGNREWQEAIFHLINRSR 122

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFI 193
           +    L+  A+T        LPDL +RL  +   ++    D    + ++  +   R    
Sbjct: 123 EGQGQLIFAAKTPATELPFELPDLLTRLIQSPAFRVPEGHDIADRKAMLESVMRRRGWQF 182

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKM 219
           D ++  +++      +     +++ +
Sbjct: 183 DPRITEHLLNEGPHRIGGMLDILNVI 208


>gi|302336549|ref|YP_003801755.1| chromosomal replication initiator protein DnaA [Spirochaeta
           smaragdinae DSM 11293]
 gi|301633734|gb|ADK79161.1| chromosomal replication initiator protein DnaA [Spirochaeta
           smaragdinae DSM 11293]
          Length = 471

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 87/253 (34%), Gaps = 33/253 (13%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGP 72
            KND PK   +            + ++ ++      A      I   P       ++ G 
Sbjct: 120 AKNDPPKKHPD-------LRPDYTFENFVIGENNTLAANACMAISKNPGTAYNPCLIYGG 172

Query: 73  SGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTR---------------KPVL 112
            G GK+ L        W+           A++  +  I+                   +L
Sbjct: 173 VGLGKTHLIQSIGNYAWAHNPDIKIAYVTAETFTNEFIEAIHHNKNHQFKNKYRKVDILL 232

Query: 113 LEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  L        +LFH  N++++ +  L+ T              L SR +    V 
Sbjct: 233 IDDIHFLQEKTGTQEELFHTFNALYETNKQLVFTCDRPVSELKQLTDRLRSRFERGLNVD 292

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           +  P  +    ++ +   ++++ ID ++   I + +  ++   E  + ++   A      
Sbjct: 293 LQAPAFETRFAILKQKVEEKKVPIDDEVIELICRNVTTNVRDLEAALTRLIAYADLLHKK 352

Query: 230 ITRSLAAEVLKET 242
           +T  +A + LK+ 
Sbjct: 353 VTLDIARQQLKDV 365


>gi|90019650|ref|YP_525477.1| chromosomal replication initiation protein [Saccharophagus
           degradans 2-40]
 gi|122996680|sp|Q21PW4|DNAA_SACD2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|89949250|gb|ABD79265.1| chromosomal replication initiator protein DnaA [Saccharophagus
           degradans 2-40]
          Length = 524

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-----WS 85
                 D+ +V  +       A ++ ++ P      + + G  G GK+ L +        
Sbjct: 190 NPTFIFDNFVVGKSNQLGLAAATQVAEN-PGGSYNPLFIYGGVGLGKTHLMHAVGNALCV 248

Query: 86  DKSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLF 127
            K  +      ++   + ++                    +L++DI      +    + F
Sbjct: 249 RKPGAKVVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQFFAGKERSQEEFF 308

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T   +P         L SR      V I  P+ +    ++ +   
Sbjct: 309 HTFNALLEGGQQIILTCDRYPKEINGLEERLKSRFGWGLTVAIEPPELETRVAILKRKAE 368

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                +    A +I QR+  ++   E  + ++   A   G  I+  L  E LK+ 
Sbjct: 369 QVGAPLPNDAAFFIAQRIRSNVRELEGALKRVIANAHFTGRDISVELVREALKDL 423


>gi|30018279|ref|NP_829910.1| chromosomal replication initiation protein [Bacillus cereus ATCC
           14579]
 gi|206970479|ref|ZP_03231432.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           AH1134]
 gi|218235327|ref|YP_002364856.1| chromosomal replication initiation protein [Bacillus cereus B4264]
 gi|228924234|ref|ZP_04087505.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228955739|ref|ZP_04117734.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228961753|ref|ZP_04123356.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229051158|ref|ZP_04194702.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH676]
 gi|229072954|ref|ZP_04206150.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           F65185]
 gi|229112902|ref|ZP_04242433.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           Rock1-15]
 gi|229130735|ref|ZP_04259688.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           BDRD-Cer4]
 gi|229148039|ref|ZP_04276378.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           BDRD-ST24]
 gi|229153648|ref|ZP_04281824.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           m1550]
 gi|229181735|ref|ZP_04309058.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           172560W]
 gi|296500839|ref|YP_003662539.1| chromosomal replication initiation protein [Bacillus thuringiensis
           BMB171]
 gi|38257412|sp|Q81JD5|DNAA_BACCR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735776|sp|B7HIH4|DNAA_BACC4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|29893819|gb|AAP07111.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           ATCC 14579]
 gi|206735056|gb|EDZ52225.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           AH1134]
 gi|218163284|gb|ACK63276.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           B4264]
 gi|228601768|gb|EEK59266.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           172560W]
 gi|228629834|gb|EEK86487.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           m1550]
 gi|228635464|gb|EEK91955.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           BDRD-ST24]
 gi|228652752|gb|EEL08637.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           BDRD-Cer4]
 gi|228670581|gb|EEL25894.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           Rock1-15]
 gi|228710200|gb|EEL62178.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           F65185]
 gi|228722221|gb|EEL73622.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH676]
 gi|228797947|gb|EEM44957.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228803967|gb|EEM50591.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228835452|gb|EEM80822.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|296321891|gb|ADH04819.1| chromosomal replication initiation protein [Bacillus thuringiensis
           BMB171]
          Length = 446

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344


>gi|225862058|ref|YP_002747436.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           03BB102]
 gi|254777885|sp|C1ES08|DNAA_BACC3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|225789460|gb|ACO29677.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           03BB102]
          Length = 446

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344


>gi|323703942|ref|ZP_08115572.1| chromosomal replication initiator protein DnaA [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531100|gb|EGB21009.1| chromosomal replication initiator protein DnaA [Desulfotomaculum
           nigrificans DSM 574]
          Length = 442

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 90/238 (37%), Gaps = 27/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A      +   P+     + + G  G GK+ L +         
Sbjct: 106 NPRYTFDTFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 165

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFND---TQLFH 128
                     S+K  +   ++I         +  +    +L++DI  L+  +    + FH
Sbjct: 166 NPGLKVAYCTSEKFTNELINSIRDDQTEEFRNKYRSMDILLIDDIQFLEKKERTQEEFFH 225

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 226 TFNTLYEANKQIIISSDRPPKEIATLEDRLRSRFEWGLITDIQSPDYETRVAILRKKAQL 285

Query: 189 RQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             +  I  +  A+I  +++ ++   E  + ++   +       T +LAAEVLK+    
Sbjct: 286 EGLSNIPDETIAFIADKIQSNIRELEGALIRVTAFSNLEKREATPALAAEVLKDVISP 343


>gi|94967032|ref|YP_589080.1| chromosomal replication initiator protein DnaA [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549082|gb|ABF39006.1| chromosomal replication initiator protein DnaA [Candidatus
           Koribacter versatilis Ellin345]
          Length = 461

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 30/248 (12%)

Query: 24  KEEQLFFSFP----RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76
           + +Q  F +            D+ +     + A     +    PS+    + L G  G G
Sbjct: 112 RVQQARFDWDGAAQLNPKYIFDNFVTGPGNQFAHAASRAVADRPSKTYNPLFLYGGVGMG 171

Query: 77  KSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDI 116
           K+ L             +      S+   + D I                T   +L++DI
Sbjct: 172 KTHLMQAIGHTIKRNNPEHSICYVSSEKFTNDMINSVRYDKMTSFRERYRTVDVLLIDDI 231

Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             +   +    + FH  N++H+    L++ +   P         L SR +   +  I  P
Sbjct: 232 QFIARKERTQEEFFHTFNALHEQQKQLVIASDRPPKELAEIEDRLRSRFEWGLIADIQPP 291

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D +    ++ K     +  +   +A +I   +  ++   E  + ++   +   G  +   
Sbjct: 292 DLETKVAILQKKAESERTQLPTDVALFIASNIRSNVRELEGALIRLVAYSSLTGGELNLM 351

Query: 234 LAAEVLKE 241
            A +VLK 
Sbjct: 352 TAQQVLKN 359


>gi|319899889|ref|YP_004159617.1| chromosomal replication initiator protein DnaA [Bacteroides
           helcogenes P 36-108]
 gi|319414920|gb|ADV42031.1| chromosomal replication initiator protein DnaA [Bacteroides
           helcogenes P 36-108]
          Length = 463

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 85/242 (35%), Gaps = 28/242 (11%)

Query: 33  PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87
           P      + +  +   + + +  + ++    P++     + L G SG GK+ LAN    K
Sbjct: 124 PHLNPEYNFETFIEGYSNKLSRSVAEAVALNPAKTIFNPLFLYGASGVGKTHLANAIGTK 183

Query: 88  -------SRSTRFSNIA---KSLDSILIDTRKPVL-------------LEDIDLLDFNDT 124
                   R    S      +  DS+  +T    +             +++   +     
Sbjct: 184 IKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQEFAGVTKTQN 243

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             FHI N +HQ    L++T+   PV        L +R K   V ++  P  +  + ++  
Sbjct: 244 TFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELEKPTVELRKNILRN 303

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 +    ++  YI + +  S+   E +V  +   +      I   L   ++++   
Sbjct: 304 KIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIYNKEIDLELTQRIVRKVVN 363

Query: 245 CD 246
            +
Sbjct: 364 SE 365


>gi|228988718|ref|ZP_04148803.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229159050|ref|ZP_04287106.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           ATCC 4342]
 gi|228624469|gb|EEK81240.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           ATCC 4342]
 gi|228771030|gb|EEM19511.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 446

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344


>gi|258590834|emb|CBE67129.1| Chromosomal replication initiator protein dnaA [NC10 bacterium
           'Dutch sediment']
          Length = 452

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 85/238 (35%), Gaps = 30/238 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWP---SWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + ++ +V S+ + A     +     S     + + G  G GK+ L +         
Sbjct: 118 NPKYTFENFVVGSSSQFAHAGCLAVAEQLSKAYNPLFIYGGVGLGKTHLLHAIGHLVLKR 177

Query: 89  -------------------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126
                               + RF +  +  +     +   +L++DI  +   +    + 
Sbjct: 178 NARLKLSYVSSEKFTNDLINAIRFDSTGEFRNR--YRSLDLLLIDDIQFIAGKERTQEEF 235

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N ++     +++++ + P         L SR +   +  I  PD +    +I K  
Sbjct: 236 FHTFNELYDSSKQIVISSDSLPREIPTLEERLRSRFEWGLIADIQPPDLETKAAIIRKKA 295

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
               + +   ++ +I + ++ ++   E  + ++   A   G  I+  LA E LKE   
Sbjct: 296 QAEGVRLPDDVSLFIAKNVQSNIRELEGSLVRLVAYASMTGREISLELAQETLKELNA 353


>gi|154174998|ref|YP_001407305.1| chromosomal replication initiation protein [Campylobacter curvus
           525.92]
 gi|166201871|sp|A7GVR3|DNAA_CAMC5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|112803521|gb|EAU00865.1| chromosomal replication initiator protein DnaA [Campylobacter
           curvus 525.92]
          Length = 436

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN---IWSDKS 88
               + ++ +V  + E A     +    P ++   + + GP+G GK+ L      +    
Sbjct: 102 NPAYTFENFVVGGSNEYAFLSAKAASEQPGKIYNPLFIYGPTGLGKTHLLQSVGNFCLNQ 161

Query: 89  RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHII 130
                   ++   +                       +L++D+  L   D    + FH  
Sbjct: 162 GKVVICVTSEQFMTDFTYNINNHSMERFREKYRNCDVLLIDDVQFLGKTDKIQEEFFHTF 221

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +H  +  ++MT+   P         L +R +   +  I+ P+ D    +I K     +
Sbjct: 222 NELHSKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIMADITPPELDTKIAIIQKKCEFDK 281

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I+++K +  YI   M  ++   E  +  ++  A      IT   A  V+++ 
Sbjct: 282 IYLNKDVINYIATNMGDNIREIESAIINLNAYANLMRQEITLDFAKNVMRDL 333


>gi|30260196|ref|NP_842573.1| chromosomal replication initiation protein [Bacillus anthracis str.
           Ames]
 gi|47525255|ref|YP_016604.1| chromosomal replication initiation protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49183040|ref|YP_026292.1| chromosomal replication initiation protein [Bacillus anthracis str.
           Sterne]
 gi|49479264|ref|YP_034361.1| chromosomal replication initiation protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52145208|ref|YP_081620.1| chromosomal replication initiation protein [Bacillus cereus E33L]
 gi|65317469|ref|ZP_00390428.1| COG0593: ATPase involved in DNA replication initiation [Bacillus
           anthracis str. A2012]
 gi|165873037|ref|ZP_02217658.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0488]
 gi|167635044|ref|ZP_02393361.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0442]
 gi|167641739|ref|ZP_02399982.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0193]
 gi|170689462|ref|ZP_02880652.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0465]
 gi|170707519|ref|ZP_02897972.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0389]
 gi|177655268|ref|ZP_02936822.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0174]
 gi|190569280|ref|ZP_03022174.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036095|ref|ZP_03103495.1| chromosomal replication initiator protein DnaA [Bacillus cereus W]
 gi|196041966|ref|ZP_03109253.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           NVH0597-99]
 gi|196045507|ref|ZP_03112738.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           03BB108]
 gi|218901207|ref|YP_002449041.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           AH820]
 gi|227812679|ref|YP_002812688.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. CDC 684]
 gi|228918101|ref|ZP_04081629.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228930495|ref|ZP_04093495.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228949211|ref|ZP_04111479.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229094600|ref|ZP_04225667.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           Rock3-42]
 gi|229124992|ref|ZP_04254166.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           95/8201]
 gi|229187718|ref|ZP_04314854.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           BGSC 6E1]
 gi|229600569|ref|YP_002864658.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0248]
 gi|254687070|ref|ZP_05150928.1| chromosomal replication initiation protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724147|ref|ZP_05185932.1| chromosomal replication initiation protein [Bacillus anthracis str.
           A1055]
 gi|254735164|ref|ZP_05192874.1| chromosomal replication initiation protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254742127|ref|ZP_05199814.1| chromosomal replication initiation protein [Bacillus anthracis str.
           Kruger B]
 gi|254755963|ref|ZP_05207995.1| chromosomal replication initiation protein [Bacillus anthracis str.
           Vollum]
 gi|254761357|ref|ZP_05213379.1| chromosomal replication initiation protein [Bacillus anthracis str.
           Australia 94]
 gi|300118809|ref|ZP_07056529.1| chromosomal replication initiation protein [Bacillus cereus SJ1]
 gi|38257418|sp|Q81W35|DNAA_BACAN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61212525|sp|Q63HG7|DNAA_BACCZ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61212595|sp|Q6HQ03|DNAA_BACHK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735774|sp|B7JJB7|DNAA_BACC0 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777883|sp|C3P8P5|DNAA_BACAA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777884|sp|C3LIC2|DNAA_BACAC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|30253517|gb|AAP24059.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. Ames]
 gi|47500403|gb|AAT29079.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49176967|gb|AAT52343.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. Sterne]
 gi|49330820|gb|AAT61466.1| chromosomal replication initiator protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51978677|gb|AAU20227.1| chromosomal replication initiator protein [Bacillus cereus E33L]
 gi|164711249|gb|EDR16805.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0488]
 gi|167510293|gb|EDR85696.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0193]
 gi|167529518|gb|EDR92268.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0442]
 gi|170127515|gb|EDS96389.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0389]
 gi|170666564|gb|EDT17337.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0465]
 gi|172080195|gb|EDT65287.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0174]
 gi|190559587|gb|EDV13578.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991262|gb|EDX55230.1| chromosomal replication initiator protein DnaA [Bacillus cereus W]
 gi|196023714|gb|EDX62390.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           03BB108]
 gi|196027221|gb|EDX65841.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           NVH0597-99]
 gi|218539127|gb|ACK91525.1| chromosomal replication initiator protein DnaA [Bacillus cereus
           AH820]
 gi|227005950|gb|ACP15693.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. CDC 684]
 gi|228595786|gb|EEK53470.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           BGSC 6E1]
 gi|228658493|gb|EEL14159.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           95/8201]
 gi|228688847|gb|EEL42678.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           Rock3-42]
 gi|228810494|gb|EEM56847.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228829214|gb|EEM74851.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228841581|gb|EEM86697.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229264977|gb|ACQ46614.1| chromosomal replication initiator protein DnaA [Bacillus anthracis
           str. A0248]
 gi|298723777|gb|EFI64499.1| chromosomal replication initiation protein [Bacillus cereus SJ1]
          Length = 446

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344


>gi|119471658|ref|ZP_01614043.1| DNA replication initiator protein, transcriptional regulator of
           replication and other genes; binds DNA at DnaA boxes
           [Alteromonadales bacterium TW-7]
 gi|119445437|gb|EAW26724.1| DNA replication initiator protein, transcriptional regulator of
           replication and other genes; binds DNA at DnaA boxes
           [Alteromonadales bacterium TW-7]
          Length = 462

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  +   + + A          P      V + G +G GK+ L +     I ++
Sbjct: 128 KENYTFDSFVEGKSNQLAKAAATQVADNPGSAFNPVFIYGGTGLGKTHLLHAVGNGIMAN 187

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K  +      ++     ++   +   +E+       +D L  +D            + FH
Sbjct: 188 KPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANKERSQEEFFH 247

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  +P         L SR      + I  P+ +    +++K    
Sbjct: 248 TFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAILMKKAQQ 307

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +  ++A +I +++  ++   E  ++++   A   G  I+     E L++ 
Sbjct: 308 SKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISIDFVKEALRDL 361


>gi|145634169|ref|ZP_01789880.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittAA]
 gi|148826359|ref|YP_001291112.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittEE]
 gi|145268613|gb|EDK08606.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittAA]
 gi|148716519|gb|ABQ98729.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittEE]
          Length = 454

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I +DK  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI NS
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|148828164|ref|YP_001292917.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittGG]
 gi|148719406|gb|ABR00534.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittGG]
          Length = 454

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I +DK  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI NS
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|153002880|ref|YP_001377205.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter
           sp. Fw109-5]
 gi|152026453|gb|ABS24221.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter
           sp. Fw109-5]
          Length = 460

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 84/237 (35%), Gaps = 25/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  +V  +   A     +  + P      + L G SG GK+ L +  +      
Sbjct: 127 NPRYTFDTFVVGESNRFAFAAAQAVAANPGHTWNPLFLHGDSGLGKTHLLHALAHAILDK 186

Query: 87  KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHI 129
           +       +  +  +  +    K               +L++D+  L   D    + FH 
Sbjct: 187 QGGRVAIVSSERYTNDFVAALSKGTMDDFRRKYRECTALLVDDVQFLAGKDKTAEEFFHT 246

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H +   +++++   P         LCSR +    V++  P+ +    ++ K     
Sbjct: 247 FNELHDHHVQIVLSSDRSPKELKGLDARLCSRFEWGMRVQVEAPEFETRAAILQKKAEVE 306

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            I +   +   +   +  ++   E  + ++   A  +   IT +LA +VL +    +
Sbjct: 307 SIDLPGDVTQLLAAHIRSNVRELEGALMRLAAFASLKSEPITVALARDVLSDVIPPE 363


>gi|225850462|ref|YP_002730696.1| chromosomal replication initiator protein DnaA [Persephonella
           marina EX-H1]
 gi|225646033|gb|ACO04219.1| chromosomal replication initiator protein DnaA [Persephonella
           marina EX-H1]
          Length = 437

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 102/271 (37%), Gaps = 31/271 (11%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRC-----LGISRDDLLVHSAIEQAVRLI 56
           +L  E+   FV  + + D   ++  Q   S P             + +V +  + A    
Sbjct: 63  SLFGENLKIFVLSEDEEDIYIDEPVQKVESKPYRLTNLNPKFVFSNFIVGNCNKIAYSAC 122

Query: 57  DSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILI--- 105
            S      ++   + + G  G GK+ L +  +         +      A +  S LI   
Sbjct: 123 MSVAENLGKIYNPLFIYGGIGLGKTHLLHATAHYVLSKNPDANIIYTTADTFMSELIYYM 182

Query: 106 ------------DTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVS 150
                            +L++D+  L+  +    +L+HI N++H     +++++ T P +
Sbjct: 183 QNGSVLEFRRRYRDVDLLLIDDVQFLEGKERTQIELYHIFNALHLIGKQVILSSDTPPKN 242

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
                  L SR  +  VV++  PD      +I K   D  I +   +   I + +  ++ 
Sbjct: 243 LKGLQERLKSRFVSGLVVEVKAPDLQTKISIINKKSRDMNIKLPNDVILLIAKTINTNIR 302

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             E  + K+   +   G  +T  +A EVLK+
Sbjct: 303 ELEGSLSKLKAYSEILGRPVTFDMAREVLKD 333


>gi|261879221|ref|ZP_06005648.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334170|gb|EFA44956.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 469

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 86/262 (32%), Gaps = 35/262 (13%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVI 68
           P      +P+  + QL         ++  + +  ++        + + +   +     + 
Sbjct: 116 PTVLDAAKPQQIDPQL------NPHLTFSNYIEGNSNMLPRSVGMSIAEHPNTMQFNPMF 169

Query: 69  LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107
           + GPSG GK+ L                     A ++  +  +    N           T
Sbjct: 170 IYGPSGCGKTHLVNAIGVKAKQLYPQKRVLYISARLFQVQYTNAVLQNKLNDFIG-FYQT 228

Query: 108 RKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              ++++DI             FHI N + +    +++ +   P+        L +R   
Sbjct: 229 IDMLIVDDIQEWVSAVKTQETFFHIFNHLFRNGKRIILASDRPPIELKGMPDRLLTRFSC 288

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             + ++  P++     ++        + I   +  +I Q    S+   + +++ +   ++
Sbjct: 289 GLIAELEKPNEQLCIDILESKIRRDGLNIPHDVVQFIAQTASGSVRDLQGVINSLMAYSI 348

Query: 225 SRGMGITRSLAAEVLKETQQCD 246
                I   LA  V+K   + D
Sbjct: 349 VYNCDIDMRLAERVIKRAVKID 370


>gi|145630089|ref|ZP_01785871.1| chromosomal replication initiation protein [Haemophilus influenzae
           R3021]
 gi|144984370|gb|EDJ91793.1| chromosomal replication initiation protein [Haemophilus influenzae
           R3021]
          Length = 439

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I ++K  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI NS
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|309973507|gb|ADO96708.1| Chromosomal replication initiator protein [Haemophilus influenzae
           R2846]
          Length = 454

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I ++K  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI NS
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|300780158|ref|ZP_07090014.1| DNA-directed DNA replication initiator protein [Corynebacterium
           genitalium ATCC 33030]
 gi|300534268|gb|EFK55327.1| DNA-directed DNA replication initiator protein [Corynebacterium
           genitalium ATCC 33030]
          Length = 533

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 99/253 (39%), Gaps = 32/253 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVG 71
           Q+     +   +   +       + ++ ++ S+       AV + ++ P+     + + G
Sbjct: 178 QREKPAHDPNRETSLN----PKYTFENFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWG 232

Query: 72  PSGSGKSCLANIWSDKSRSTRFSN----------IAKSLDSILIDTRKP----------V 111
            SG GK+ L +   + SR  +                 ++S+  D ++           +
Sbjct: 233 GSGLGKTHLLHAAGNYSRVLQPDLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRDLDIL 292

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           +++DI  L+  +    + FH  N++HQ +  +++++   P         L +R +   + 
Sbjct: 293 MVDDIQFLEGKEGTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLIT 352

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            +  PD +    +++K  A     +D ++   I  + E S+   E  + ++   +     
Sbjct: 353 DVQPPDLETRIAILMKKAAADGTQVDDEVLELIASKFESSIRELEGALIRVSAYSSLIKE 412

Query: 229 GITRSLAAEVLKE 241
            IT  +A   L++
Sbjct: 413 PITLDVAQIALRD 425


>gi|294496876|ref|YP_003560576.1| chromosomal replication initiator protein DnaA [Bacillus megaterium
           QM B1551]
 gi|294346813|gb|ADE67142.1| chromosomal replication initiator protein DnaA [Bacillus megaterium
           QM B1551]
          Length = 447

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 98/266 (36%), Gaps = 30/266 (11%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61
           N  +E++    P K+ N     +  Q   +       + D  ++ S    A     +   
Sbjct: 83  NQAEEEFDIQTPKKKVNKDEGAEFPQSMLN----SKYTFDTFVIGSGNRFAHAASLAVAE 138

Query: 62  WPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR---- 108
            P++    + + G  G GK+ L +         + +    + +  K  +  +   R    
Sbjct: 139 APAKAYNPLFIYGGVGLGKTHLMHAIGHYVLDHNPAAKVVYLSSEKFTNEFINSIRDNKA 198

Query: 109 ----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                       +L++DI  L   +    + FH  N++H+    +++++   P       
Sbjct: 199 VEFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLE 258

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E  
Sbjct: 259 DRLRSRFEWGLITDITPPDLETRIAILRKKAKADGLVIPNEVMLYIANQIDSNIRELEGA 318

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKE 241
           + ++   +      I   LAAE LK+
Sbjct: 319 LIRVVAYSSLINKDINADLAAEALKD 344


>gi|228471635|ref|ZP_04056409.1| chromosomal replication initiator protein DnaA [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228277054|gb|EEK15740.1| chromosomal replication initiator protein DnaA [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 478

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 37/239 (15%)

Query: 35  CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82
               + D  +   +   A      + +         + + G  G GK+ LA+        
Sbjct: 142 NPNKNFDTFIEGESNRLARSAGKAITERPGGTSFNPLFIFGGVGLGKTHLAHAIGNEIQE 201

Query: 83  --------------------IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
                               + +  +  T F +  + +D ++ID  +             
Sbjct: 202 KHPKKRILYIEAEDFTKQYSVAAKNNNRTDFIHFYQQIDVLIIDNVQFFA-----SKPGT 256

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
               F I N +HQ    L++T+   PV        L SR K     ++  PD    ++++
Sbjct: 257 QDVFFQIFNHLHQNGKQLILTSDKAPVDIQDVEQRLLSRFKWGLSAELQAPDYQMRKRIL 316

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +     + + +++  YI Q ++ ++   E +   +   AL     IT  LA + + +
Sbjct: 317 QAILYRDGVEMSEEIVDYIAQNVKTNIRELEGVNTSLMAEALFNKKEITLDLAKKAVDK 375


>gi|331007619|ref|ZP_08330761.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC1989]
 gi|330418559|gb|EGG93083.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC1989]
          Length = 584

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 87/235 (37%), Gaps = 32/235 (13%)

Query: 37  GISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-------- 84
             + D  +   +       A +++++ P      + + G  G GK+ L +          
Sbjct: 252 SFTFDSFVEGKSNQMGLAAAQQVVEN-PGGSYNPLFIYGGVGLGKTHLMHAVGNEMARRN 310

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLF 127
                         +D  ++ + + I          +   +L++DI        +  + F
Sbjct: 311 PNAKIVYLHSERFVADMVKALQLNAINDFKR--YYRSVDALLIDDIQFFAGKDRSQEEFF 368

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  +++T   +P         L SR      +++  P+ +    +++K  A
Sbjct: 369 HTFNALLEGNQQIILTCDRYPKVINNLEERLKSRFGWGLTIEVEPPELETRAAILLKRAA 428

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +I +    A +I QR+  ++   E  + ++   A      IT  L  E LK+ 
Sbjct: 429 EIKIDLSYDAAFFIAQRVRSNVRELEGALKRVIANATFTQRPITVDLVKEALKDL 483


>gi|281423570|ref|ZP_06254483.1| bacterial DnaA protein helix-turn-helix protein [Prevotella oris
           F0302]
 gi|281402390|gb|EFB33221.1| bacterial DnaA protein helix-turn-helix protein [Prevotella oris
           F0302]
          Length = 468

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 92/263 (34%), Gaps = 37/263 (14%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS-RVVI 68
           P     D+  + + QL         ++  + +  ++ + A  L   I   PS P    + 
Sbjct: 115 PSPMDVDKAADIDTQL------DPHLNFKNYVEGTSNKLARSLGLSIAEHPSQPQFNPMF 168

Query: 69  LVGPSGSGKSCL---------------------ANIWSDK-SRSTRFSNIAKSLDSILID 106
           + GPSG GK+ L                     A ++  +   +   S+I   +      
Sbjct: 169 IYGPSGCGKTHLINAIGLRCKQLYPEKRVLYISARLFQSQFVDANLHSSINDFIR--FYQ 226

Query: 107 TRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           T   ++++DI             FHI N + +    +L+ +   PV        L +R  
Sbjct: 227 TIDMLIVDDIQEWVNATKTQDTFFHIFNHLFRNGKRILLVSDRPPVDLKGMNERLLTRFS 286

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + ++  P+ +    ++        + I  ++  +I      S+   E +V+ +   +
Sbjct: 287 CGLIAELEKPNVELCTDILKAKIRRDGLHIPDEVIRFIASTANGSVRDLEGVVNSLLAYS 346

Query: 224 LSRGMGITRSLAAEVLKETQQCD 246
           +     +   LA  V+K   + D
Sbjct: 347 VVYNSNVDMRLAERVIKRAVKVD 369


>gi|160889316|ref|ZP_02070319.1| hypothetical protein BACUNI_01739 [Bacteroides uniformis ATCC 8492]
 gi|270295909|ref|ZP_06202109.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           D20]
 gi|317479651|ref|ZP_07938776.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           4_1_36]
 gi|156861323|gb|EDO54754.1| hypothetical protein BACUNI_01739 [Bacteroides uniformis ATCC 8492]
 gi|270273313|gb|EFA19175.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           D20]
 gi|316904216|gb|EFV26045.1| chromosomal replication initiator protein DnaA [Bacteroides sp.
           4_1_36]
          Length = 461

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 95/266 (35%), Gaps = 33/266 (12%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSF--PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66
            +P KQ  D+   +  Q+      P      + +  +   + + +  + ++    P++  
Sbjct: 101 IIPQKQVMDK---RIPQIPVPELDPHLNPEYNFETFIEGYSNKLSRSVAEAVALNPAKTI 157

Query: 67  ---VILVGPSGSGKSCLANIWSDK-------SRSTRFSNIA---KSLDSILIDTRKPVL- 112
              + L G SG GK+ LAN    K        R    S      +  DS+  +T    + 
Sbjct: 158 FNPLFLYGASGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFIN 217

Query: 113 ------------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                       +++   +       FHI N +HQ    L++T+   PV        L +
Sbjct: 218 FYQTIDILIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLIT 277

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R K   V ++  P  +  + ++        +   +++  YI + +  S+   E +V  + 
Sbjct: 278 RFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPQEVIDYIAENVGDSVRDLEGIVISIM 337

Query: 221 NLALSRGMGITRSLAAEVLKETQQCD 246
             +      I   L   ++++    +
Sbjct: 338 AHSTIYNKEIDLELTQRIVRKVVNSE 363


>gi|315606265|ref|ZP_07881281.1| DNA-directed DNA replication initiator protein [Prevotella buccae
           ATCC 33574]
 gi|315251956|gb|EFU31929.1| DNA-directed DNA replication initiator protein [Prevotella buccae
           ATCC 33574]
          Length = 469

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 84/262 (32%), Gaps = 35/262 (13%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVI 68
           P      QP+  + QL         ++ ++ +   +        + + +   +     + 
Sbjct: 116 PTALDAAQPQALDPQL------NPHLTFNNYIEGDSNKLPRSIGLSIAEHPNTTQFNPMF 169

Query: 69  LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107
           + GPSG GK+ L                     A ++  +  S    N           T
Sbjct: 170 IYGPSGCGKTHLVNAIGLHAKQLYPQKRVLYVSARLFQVQYTSAVLQNTLNDF-IKFYQT 228

Query: 108 RKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              ++++DI             FHI N + +    +++ +   PV        L +R   
Sbjct: 229 IDLLIVDDIQEWMTATKTQETFFHIFNHLFKNGKRIILASDRPPVDLKGMPDRLLTRFSC 288

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             + ++  P+      ++        + I   +  YI +    S+   E +++ +   ++
Sbjct: 289 GLIAELEKPNVQLCIDILQSKIRRDGLKIPDNVVQYIAENASGSVRGLEGVINGLLAYSI 348

Query: 225 SRGMGITRSLAAEVLKETQQCD 246
           +    I   LA   +K     +
Sbjct: 349 TYNCDINLKLAERCIKRAVNIE 370


>gi|307243408|ref|ZP_07525565.1| chromosomal replication initiator protein DnaA [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493218|gb|EFM65214.1| chromosomal replication initiator protein DnaA [Peptostreptococcus
           stomatis DSM 17678]
          Length = 454

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 89/261 (34%), Gaps = 35/261 (13%)

Query: 16  QKNDQPKNKEEQLFFSFPR-------CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---- 64
           +KN  PK   E++                 + +  +V S+   AV        +      
Sbjct: 93  EKNSNPKENSEKI-MDLATSIANSNLNPKYTFNTFVVGSSNAMAVAACQRVAEYDETAND 151

Query: 65  RVVILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTRK--------- 109
             + L G  G GK+ L +    +      S+   + +     + ++   R+         
Sbjct: 152 NPLFLYGGVGLGKTHLMHAIGHRVLERDPSKKILYVSSETFTNEMVTAIREKKNSEFREK 211

Query: 110 -----PVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                  +++D+  +        +LFH  N +H     +++++   P         L SR
Sbjct: 212 YRNVDIFMIDDVQFVAGKNSVQEELFHTFNDVHGAGKKIILSSDKPPKDIPELEERLRSR 271

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                +  I  PD      ++     + ++ ID  +  YI   ++ ++   E  ++K+  
Sbjct: 272 FVWGLITDIQAPDYGTRMAILQNKAENDKLDIDSDVFEYIADNVKSNIRELEGALNKVIL 331

Query: 222 LALSRGMGITRSLAAEVLKET 242
            +      +  + A E LK+ 
Sbjct: 332 YSNLSAKPMNLATAKEALKDV 352


>gi|229176165|ref|ZP_04303657.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           MM3]
 gi|228607324|gb|EEK64654.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           MM3]
          Length = 446

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 86/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK 
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKN 344


>gi|295406865|ref|ZP_06816669.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8819]
 gi|294968330|gb|EFG44355.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8819]
          Length = 453

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91
            D  ++         A   +   P+     + + G  G GK+ L +            + 
Sbjct: 122 FDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAK 181

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHIINSI 133
                ++   +  I + +                +L++DI  +        + F+  N +
Sbjct: 182 VIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   + ++ 
Sbjct: 242 HQNNKQIVISSDRPPKEIA-QLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLD 300

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +   G  IT  L AE LK+  Q 
Sbjct: 301 IPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQA 353


>gi|283469230|emb|CAQ48441.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 453

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91
            D  ++         A   +   P+     + + G  G GK+ L +            + 
Sbjct: 122 FDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAK 181

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHIINSI 133
                ++   +  I + +                +L++DI  +        + F+  N +
Sbjct: 182 VIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   + ++ 
Sbjct: 242 HQNNKQIVISSDRPPKEIA-QLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLD 300

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +   G  IT  L AE LK+  Q 
Sbjct: 301 IPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQA 353


>gi|82749778|ref|YP_415519.1| chromosomal replication initiation protein [Staphylococcus aureus
           RF122]
 gi|123727433|sp|Q2YUP1|DNAA_STAAB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|82655309|emb|CAI79689.1| chromosomal replicator initiator protein [Staphylococcus aureus
           RF122]
          Length = 453

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91
            D  ++         A   +   P+     + + G  G GK+ L +            + 
Sbjct: 122 FDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAK 181

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHIINSI 133
                ++   +  I + +                +L++DI  +        + F+  N +
Sbjct: 182 VIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   + ++ 
Sbjct: 242 HQNNKQIVISSDRPPKEIA-QLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLD 300

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +   G  IT  L AE LK+  Q 
Sbjct: 301 IPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQA 353


>gi|49482254|ref|YP_039478.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|221141516|ref|ZP_03566009.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|257424197|ref|ZP_05600626.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257426874|ref|ZP_05603276.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257429510|ref|ZP_05605897.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257432157|ref|ZP_05608520.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257435118|ref|ZP_05611169.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus M876]
 gi|258423237|ref|ZP_05686129.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9635]
 gi|282907048|ref|ZP_06314896.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282910027|ref|ZP_06317835.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282912275|ref|ZP_06320071.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282912915|ref|ZP_06320707.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282922543|ref|ZP_06330233.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus C101]
 gi|283959485|ref|ZP_06376926.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293497968|ref|ZP_06665822.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293511558|ref|ZP_06670252.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus M809]
 gi|293550167|ref|ZP_06672839.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295429298|ref|ZP_06821920.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297589200|ref|ZP_06947841.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus MN8]
 gi|304379949|ref|ZP_07362678.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|56748687|sp|Q6GKU4|DNAA_STAAR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|49240383|emb|CAG39029.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257273215|gb|EEV05317.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257276505|gb|EEV07956.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257279991|gb|EEV10578.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257283036|gb|EEV13168.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257285714|gb|EEV15830.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus M876]
 gi|257846566|gb|EEV70588.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9635]
 gi|269939527|emb|CBA12169.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282314764|gb|EFB45150.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus C101]
 gi|282323015|gb|EFB53334.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282323971|gb|EFB54287.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282326093|gb|EFB56398.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282329947|gb|EFB59468.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|283789077|gb|EFC27904.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290919214|gb|EFD96290.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096899|gb|EFE27157.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291465516|gb|EFF08048.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus M809]
 gi|295127057|gb|EFG56701.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297577711|gb|EFH96424.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus MN8]
 gi|302749912|gb|ADL64089.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304341529|gb|EFM07439.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312436858|gb|ADQ75929.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195227|gb|EFU25615.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus CGS00]
 gi|329312724|gb|AEB87137.1| Chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus T0131]
          Length = 453

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91
            D  ++         A   +   P+     + + G  G GK+ L +            + 
Sbjct: 122 FDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAK 181

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHIINSI 133
                ++   +  I + +                +L++DI  +        + F+  N +
Sbjct: 182 VIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   + ++ 
Sbjct: 242 HQNNKQIVISSDRPPKEIA-QLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLD 300

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +   G  IT  L AE LK+  Q 
Sbjct: 301 IPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQA 353


>gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15925706|ref|NP_373239.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus N315]
 gi|21281730|ref|NP_644816.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49484913|ref|YP_042134.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57651109|ref|YP_184912.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161673|ref|YP_492723.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88193824|ref|YP_498609.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148266448|ref|YP_001245391.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392481|ref|YP_001315156.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151220213|ref|YP_001331036.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156978332|ref|YP_001440591.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161508267|ref|YP_001573926.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253730400|ref|ZP_04864565.1| replication initiation protein DnaA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733838|ref|ZP_04868003.1| replication initiation protein DnaA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|254663935|ref|ZP_05143407.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257793539|ref|ZP_05642518.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9781]
 gi|258411155|ref|ZP_05681434.1| replication initiation protein DnaA [Staphylococcus aureus A9763]
 gi|258420941|ref|ZP_05683875.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9719]
 gi|258438580|ref|ZP_05689803.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A9299]
 gi|258443964|ref|ZP_05692302.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A8115]
 gi|258446220|ref|ZP_05694380.1| replication initiation protein dnaA [Staphylococcus aureus A6300]
 gi|258449121|ref|ZP_05697227.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A6224]
 gi|258451366|ref|ZP_05699397.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A5948]
 gi|258454401|ref|ZP_05702369.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A5937]
 gi|262049433|ref|ZP_06022305.1| chromosomal replicator initiator protein [Staphylococcus aureus
           D30]
 gi|262051894|ref|ZP_06024109.1| chromosomal replicator initiator protein [Staphylococcus aureus
           930918-3]
 gi|269201691|ref|YP_003280960.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282894280|ref|ZP_06302510.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8117]
 gi|282902632|ref|ZP_06310525.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282918069|ref|ZP_06325819.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus D139]
 gi|282920720|ref|ZP_06328439.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9765]
 gi|282921291|ref|ZP_06329009.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus C427]
 gi|282927751|ref|ZP_06335365.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A10102]
 gi|283767791|ref|ZP_06340706.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus H19]
 gi|284023038|ref|ZP_06377436.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus 132]
 gi|294849829|ref|ZP_06790569.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9754]
 gi|296275686|ref|ZP_06858193.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297209451|ref|ZP_06925849.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245900|ref|ZP_06929762.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8796]
 gi|300911475|ref|ZP_07128924.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|56748673|sp|Q6GD89|DNAA_STAAS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56749818|sp|P68865|DNAA_STAAM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56749819|sp|P68866|DNAA_STAAN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56749820|sp|P68867|DNAA_STAAU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56749821|sp|P68868|DNAA_STAAW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|71151805|sp|Q5HJZ5|DNAA_STAAC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123291872|sp|Q2G2H5|DNAA_STAA8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123736033|sp|Q2FKQ5|DNAA_STAA3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166215334|sp|A7WWM4|DNAA_STAA1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|172048750|sp|A6QD41|DNAA_STAAE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189083281|sp|A6TXF1|DNAA_STAA2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189083282|sp|A5INP2|DNAA_STAA9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189083283|sp|A8YYS4|DNAA_STAAT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|1694677|dbj|BAA13755.1| DnaA [Staphylococcus aureus]
 gi|13699918|dbj|BAB41217.1| chromosomal replication initiator protein [Staphylococcus aureus
           subsp. aureus N315]
 gi|14245768|dbj|BAB56163.1| chromosomal replication initiator protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21203165|dbj|BAB93866.1| chromosomal replication initiator protein [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49243356|emb|CAG41773.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57285295|gb|AAW37389.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus COL]
 gi|58578564|dbj|BAD89355.1| DnaA [Staphylococcus aureus]
 gi|87127647|gb|ABD22161.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87201382|gb|ABD29192.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147739517|gb|ABQ47815.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149944933|gb|ABR50869.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150373013|dbj|BAF66273.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156720467|dbj|BAF76884.1| chromosomal replication initiator protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160367076|gb|ABX28047.1| replication initiation protein DnaA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253725880|gb|EES94609.1| replication initiation protein DnaA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728141|gb|EES96870.1| replication initiation protein DnaA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257787511|gb|EEV25851.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9781]
 gi|257840040|gb|EEV64505.1| replication initiation protein DnaA [Staphylococcus aureus A9763]
 gi|257843131|gb|EEV67546.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9719]
 gi|257848139|gb|EEV72131.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A9299]
 gi|257850848|gb|EEV74792.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A8115]
 gi|257855046|gb|EEV77989.1| replication initiation protein dnaA [Staphylococcus aureus A6300]
 gi|257857554|gb|EEV80449.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A6224]
 gi|257860896|gb|EEV83713.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A5948]
 gi|257863495|gb|EEV86255.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus A5937]
 gi|259160221|gb|EEW45250.1| chromosomal replicator initiator protein [Staphylococcus aureus
           930918-3]
 gi|259162430|gb|EEW47000.1| chromosomal replicator initiator protein [Staphylococcus aureus
           D30]
 gi|262073981|gb|ACY09954.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282315706|gb|EFB46090.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus C427]
 gi|282318354|gb|EFB48714.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus D139]
 gi|282590511|gb|EFB95589.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A10102]
 gi|282594128|gb|EFB99116.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9765]
 gi|282597091|gb|EFC02050.1| DNA replication initiator protein, ATPase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282763325|gb|EFC03455.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8117]
 gi|283461670|gb|EFC08754.1| chromosomal replication initiator protein dnaA [Staphylococcus
           aureus subsp. aureus H19]
 gi|285815728|gb|ADC36215.1| Chromosomal replication initiator protein DnaA [Staphylococcus
           aureus 04-02981]
 gi|294823377|gb|EFG39806.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A9754]
 gi|296885912|gb|EFH24847.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177265|gb|EFH36518.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus A8796]
 gi|298693323|gb|ADI96545.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus ED133]
 gi|300887654|gb|EFK82850.1| DNA-directed DNA replication initiator protein [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302331773|gb|ADL21966.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|312828564|emb|CBX33406.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315129544|gb|EFT85536.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315197919|gb|EFU28252.1| chromosomal replication initiation protein [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320141418|gb|EFW33261.1| replication initiator protein DnaA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144401|gb|EFW36166.1| replication initiator protein DnaA [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323439698|gb|EGA97416.1| chromosomal replication initiation protein [Staphylococcus aureus
           O11]
 gi|323443271|gb|EGB00888.1| chromosomal replication initiation protein [Staphylococcus aureus
           O46]
 gi|329725589|gb|EGG62068.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus 21172]
 gi|329731888|gb|EGG68248.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus 21189]
 gi|329732572|gb|EGG68922.1| chromosomal replication initiator protein DnaA [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 453

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91
            D  ++         A   +   P+     + + G  G GK+ L +            + 
Sbjct: 122 FDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAK 181

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHIINSI 133
                ++   +  I + +                +L++DI  +        + F+  N +
Sbjct: 182 VIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   + ++ 
Sbjct: 242 HQNNKQIVISSDRPPKEIA-QLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLD 300

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +   G  IT  L AE LK+  Q 
Sbjct: 301 IPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQA 353


>gi|254876148|ref|ZP_05248858.1| chromosomal replication initiator protein dnaA [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842169|gb|EET20583.1| chromosomal replication initiator protein dnaA [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 497

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           ++  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 154 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 213

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 214 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 273

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 274 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 333

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 334 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 393

Query: 240 KET 242
           ++ 
Sbjct: 394 RDV 396


>gi|195973842|gb|ACG63486.1| chromosomal replication initiator protein DnaA [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|195973844|gb|ACG63487.1| chromosomal replication initiator protein DnaA [Francisella
           philomiragia]
 gi|195973846|gb|ACG63488.1| chromosomal replication initiator protein DnaA [Francisella
           philomiragia]
 gi|195973848|gb|ACG63489.1| chromosomal replication initiator protein DnaA [Francisella
           philomiragia]
 gi|195973850|gb|ACG63490.1| chromosomal replication initiator protein DnaA [Francisella
           philomiragia]
          Length = 434

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           ++  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 116 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 175

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 235

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 295

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 296 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 355

Query: 240 KET 242
           ++ 
Sbjct: 356 RDV 358


>gi|167627066|ref|YP_001677566.1| chromosomal replication initiation protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|241667603|ref|ZP_04755181.1| chromosomal replication initiation protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|189044639|sp|B0TWF7|DNAA_FRAP2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|167597067|gb|ABZ87065.1| chromosomal replication initiator protein DnaA [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 491

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           ++  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 148 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 208 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387

Query: 240 KET 242
           ++ 
Sbjct: 388 RDV 390


>gi|118474813|ref|YP_891211.1| chromosomal replication initiation protein [Campylobacter fetus
           subsp. fetus 82-40]
 gi|166201872|sp|A0RLX8|DNAA_CAMFF RecName: Full=Chromosomal replication initiator protein DnaA
 gi|118414039|gb|ABK82459.1| chromosomal replication initiator protein DnaA [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 436

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN---IWSDKS 88
               + +  +V  + + A          P +V   + + G +G GK+ L      +  + 
Sbjct: 102 NPSYTFESFVVGDSNQFAYISSQQAAQNPGKVYNPLFIYGSTGLGKTHLLQSIGNYCLEH 161

Query: 89  RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHII 130
             T     ++   S  I   +                +L++DI     ++    + FH  
Sbjct: 162 GKTVICVTSEQFMSDFIRNVENRTMNKFKEKYRNCDILLIDDIQFFHKSEKTQEEFFHTF 221

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N IH     ++MT+   P         L SR +   +  I+ P+ D   ++I        
Sbjct: 222 NEIHAKKGQIVMTSDKPPKMLKGFEERLKSRFEWGLMADITPPELDTKIRIIKAKCEFDG 281

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I +   +  YI   M  ++   E  +  ++  A      IT   A  V+K+ 
Sbjct: 282 INLSSDIIEYIATNMGDNIREIESAIININAFANIMRQEITLEFAKNVIKDQ 333


>gi|221633151|ref|YP_002522376.1| chromosomal replication initiator protein DnaA [Thermomicrobium
           roseum DSM 5159]
 gi|254777921|sp|B9L0U6|DNAA_THERP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|221156567|gb|ACM05694.1| chromosomal replication initiator protein DnaA [Thermomicrobium
           roseum DSM 5159]
          Length = 465

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 94/249 (37%), Gaps = 30/249 (12%)

Query: 23  NKEEQLFF----SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGS 75
           +  +QL              + +  +V      A     +    P      + + G  G 
Sbjct: 104 SASKQLSLTPSPEHGLNPRYTFEKFVVGPNNRLAHAAALAVADRPGEKFNPLFIYGGVGL 163

Query: 76  GKSCLANIWSDKSRSTR------FSNIAKSLDSILID--------------TRKPVLLED 115
           GK+ L +    ++ + R      + +     + ++                T   ++++D
Sbjct: 164 GKTHLLHAIGHRALANRPTLKVCYVSSEVFTNELINAIRHQRTDDFRNRYRTIDILMIDD 223

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I  +   +    + FH  N+++Q    +++++   P         L SR +   +  I  
Sbjct: 224 IQFIAGKESTQEEFFHTFNALYQSGKQIVISSDRPPRLIPDLADRLRSRFEGGLLADIQP 283

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           PD +  + ++++   +  + +   +  ++ +R+E ++   E  ++++  LA      IT 
Sbjct: 284 PDLETRQAILIEKGRELGVQMPSDVVEFVARRIESNIRELEGALNRIVALAQLTHQPITL 343

Query: 233 SLAAEVLKE 241
           +LA E L+E
Sbjct: 344 ALAVEALRE 352


>gi|183980036|ref|YP_001848327.1| chromosomal replication initiator protein DnaA [Mycobacterium
           marinum M]
 gi|226735828|sp|B2HI46|DNAA_MYCMM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|183173362|gb|ACC38472.1| Chromosomal replication initiator protein DnaA [Mycobacterium
           marinum M]
          Length = 510

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 174 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 232

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 233 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 292

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 293 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 352

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 353 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 405


>gi|312888502|ref|ZP_07748073.1| chromosomal replication initiator protein DnaA [Mucilaginibacter
           paludis DSM 18603]
 gi|311299000|gb|EFQ76098.1| chromosomal replication initiator protein DnaA [Mucilaginibacter
           paludis DSM 18603]
          Length = 475

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 85/260 (32%), Gaps = 39/260 (15%)

Query: 10  FFVPDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           F +P  +K    P     QL          + +  +       A     +  + P     
Sbjct: 124 FVIPGLKKLQVDP-----QL------NQNYTFESFIEGDCNRLARSAGYAVAAKPGGTSF 172

Query: 67  --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107
             +++ G  G GK+ LA                     +K        +  +  +  ++ 
Sbjct: 173 NPLMIYGGVGLGKTHLAQAIGNEIKRTLPDKLVLYVSCEKFTQQFVDALKHNNINDFVNF 232

Query: 108 RKPV---LLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            + +   +++D+      +      FHI N +HQ    L++T+   P         L SR
Sbjct: 233 YQAIDVLIMDDVHNFAGKEKTQDFFFHIFNHLHQSGKQLIITSDKAPKDLAGLEERLLSR 292

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K      + +PD +    ++        I +  ++  Y+   ++ ++   E  +  +  
Sbjct: 293 FKWGLSADLQIPDLETRMAILKTKIYQDGIDLPYEVIEYVAHNIDNNVRELEGAMVSLLA 352

Query: 222 LALSRGMGITRSLAAEVLKE 241
            +      I  +LA  +LK 
Sbjct: 353 QSTLNRKEIDLNLAKSMLKN 372


>gi|311112571|ref|YP_003983793.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa
           ATCC 17931]
 gi|310944065|gb|ADP40359.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa
           ATCC 17931]
          Length = 553

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
               + D  ++  +   A      +   P+     + + G SG GK+ L +     ++  
Sbjct: 212 NPNYTFDTFVIGQSNRFAHAAAFAVSESPAQAYNPLFIYGDSGLGKTHLLHAIGHYAKHL 271

Query: 91  -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
                 R+ N  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 272 FPSLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDMLLIDDIQFLAGKEHTQEEFFH 331

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H +   +++T+   P         + SR +   +  +  P+ +    ++ K    
Sbjct: 332 TFNALHNHQKQVVITSDLPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAILRKKAQS 391

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +   +  YI   +  ++   E  + ++   A      +  +LA  VLK+ 
Sbjct: 392 ESLNVPDDVMEYIASHITANIRELEGALIRVTAFASLNKQPVDVALAEVVLKDL 445


>gi|319651099|ref|ZP_08005233.1| chromosomal replication initiator protein dnaA [Bacillus sp.
           2_A_57_CT2]
 gi|317397269|gb|EFV77973.1| chromosomal replication initiator protein dnaA [Bacillus sp.
           2_A_57_CT2]
          Length = 448

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 90/240 (37%), Gaps = 27/240 (11%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW 84
           L  +       + D  ++ S    A     +    P++    + + G  G GK+ L +  
Sbjct: 107 LPLTM-LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAI 165

Query: 85  -----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND- 123
                            S+K  +   ++I  +      D  + V   L++DI  L   + 
Sbjct: 166 GHYVLDHNPSAKVVYLSSEKFTNEFINSIRDNKAGDFRDKYRNVDVLLIDDIQFLAGKEQ 225

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++H+    +++++   P         L SR +   +  I+ PD +    +
Sbjct: 226 TQEEFFHTFNTLHEESKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAI 285

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + K      + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK+
Sbjct: 286 LRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 345


>gi|260774541|ref|ZP_05883454.1| chromosomal replication initiator protein dnaA [Vibrio
           metschnikovii CIP 69.14]
 gi|260610447|gb|EEX35653.1| chromosomal replication initiator protein dnaA [Vibrio
           metschnikovii CIP 69.14]
          Length = 311

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 23/206 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID 106
           P      + L G +G GK+ L +   +                     ++ K+L +  I+
Sbjct: 5   PGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIE 64

Query: 107 -------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                  +   +L++DI      +    + FH  N++ + +  +++T+  +P        
Sbjct: 65  EFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVED 124

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR      V I  P+ +    +++    D QI +  ++A +I +R+  ++   E  +
Sbjct: 125 RLKSRFGWGLTVAIEPPELETRVAILMTKAEDHQIHLPDEVAFFIAKRLRSNVRELEGAL 184

Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242
           +++   A   G  IT     E L++ 
Sbjct: 185 NRVIANANFTGRPITIDFVREALRDL 210


>gi|163845604|ref|YP_001633648.1| chromosomal replication initiation protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523303|ref|YP_002567773.1| chromosomal replication initiation protein [Chloroflexus sp.
           Y-400-fl]
 gi|189044632|sp|A9WAN1|DNAA_CHLAA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777893|sp|B9LFG0|DNAA_CHLSY RecName: Full=Chromosomal replication initiator protein DnaA
 gi|163666893|gb|ABY33259.1| chromosomal replication initiator protein DnaA [Chloroflexus
           aurantiacus J-10-fl]
 gi|222447182|gb|ACM51448.1| chromosomal replication initiator protein DnaA [Chloroflexus sp.
           Y-400-fl]
          Length = 479

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--R 89
               +    +V S+   A     +    P +    + L G  G GK+ L +   ++   R
Sbjct: 141 NPRYTFSSFIVGSSNRLAHAACLAVADNPGQAYNPLFLYGGVGLGKTHLLHAIGNRVLDR 200

Query: 90  STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
               + +  S +    D    +                  L++DI  +   D    + FH
Sbjct: 201 DPEINVLYVSSEKFTNDLINAIRRQQTEEFRMRYRNIDVLLIDDIQFIAGKDATQEEFFH 260

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     +++++   P +       L SR +   +V +  PD +    ++      
Sbjct: 261 TFNTLHSAAKHIVISSDRPPKAILTLEERLRSRFEWGLIVDVQPPDLETRTAILRAKAEQ 320

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +  ++  ++  +++ ++   E  ++++   A      IT   A   L + 
Sbjct: 321 MSVHVPDEVIDFLAHKIQSNIRELEGSLNRVAAYAELNRAPITIETATAALADL 374


>gi|322417546|ref|YP_004196769.1| chromosomal replication initiator protein DnaA [Geobacter sp. M18]
 gi|320123933|gb|ADW11493.1| chromosomal replication initiator protein DnaA [Geobacter sp. M18]
          Length = 465

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 93/243 (38%), Gaps = 29/243 (11%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLA 81
            EQ+          + +  +   + + A     +  + P      + + G  G GK+ L 
Sbjct: 124 PEQVP---NLNPKYTFESFVSGPSNQFAYAASQAVANKPATNYNPLFIYGGVGLGKTHLV 180

Query: 82  NIWSDKSRS------TRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDF 121
           N   ++  +        + +  K ++ ++   R                +L++DI  +  
Sbjct: 181 NAIGNQILAKNPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQFMAG 240

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            +    + FH  N++++    +++T+  FP         L SR +   +  I  P  +  
Sbjct: 241 KEATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPGVETK 300

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             ++ K      + +   +A ++ +    ++   E ++ +++  A   G  IT S+A EV
Sbjct: 301 VAILKKKSDMHAVNLPDDVALFLAEGATSNIRELEGMLIRLEAFASLTGQEITLSMAREV 360

Query: 239 LKE 241
           +K+
Sbjct: 361 MKD 363


>gi|189423083|ref|YP_001950260.1| chromosomal replication initiation protein [Geobacter lovleyi SZ]
 gi|189419342|gb|ACD93740.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ]
          Length = 459

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW----- 84
           P     + D  +  +  + A      +   P+     + + G  G GKS L N       
Sbjct: 123 PLNPRYTFDQFVSGAGNQFAHAAAMAVSHNPAITYNPLFIYGGVGLGKSHLLNAVGHKII 182

Query: 85  ------------SDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDT---QL 126
                       ++K      + I  +      +   +   +L++DI  +   +    + 
Sbjct: 183 SDNSSTKICYCSAEKFMHEMVNCIKLNKMDEFRERFRSIDVLLIDDIQFITGKERTQVEF 242

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++++    +++T+  FP         L SR +   +  I  PD +    ++ K  
Sbjct: 243 FHTFNALYESHKQIVITSDKFPREMPNLEDRLRSRFEWGLIADIQPPDLETKIAILKKKA 302

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              +I +   +A ++     R++   E ++ ++   +  + + IT ++A   LK+
Sbjct: 303 DTNRILLPDDVAYFLASSDTRNIRELEGMLIRLGAYSSLQHIPITLTMAQNNLKD 357


>gi|126651995|ref|ZP_01724187.1| chromosomal replication initiation protein [Bacillus sp. B14905]
 gi|126591264|gb|EAZ85373.1| chromosomal replication initiation protein [Bacillus sp. B14905]
          Length = 449

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
               + D  ++ S    A     +    P++      + G  G GK+ L +         
Sbjct: 114 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPFFIYGGVGLGKTHLMHAIGHYVLEH 173

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 174 NPNAKVVYLSSEKFTNEFINSIRDNKALDFRNKYRNVDVLLIDDIQFLAGKESTQEEFFH 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 234 TFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAPPDLETRIAILRKKAKA 293

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +  ++  YI  +++ ++   E  + ++   +      I  +LAAE LK+
Sbjct: 294 DGLEVPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDINATLAAEALKD 346


>gi|108796982|ref|YP_637179.1| chromosomal replication initiation protein [Mycobacterium sp. MCS]
 gi|119866066|ref|YP_936018.1| chromosomal replication initiation protein [Mycobacterium sp. KMS]
 gi|126432614|ref|YP_001068305.1| chromosomal replication initiation protein [Mycobacterium sp. JLS]
 gi|123179824|sp|Q1BG61|DNAA_MYCSS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166214681|sp|A3PSD7|DNAA_MYCSJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166214682|sp|A1U8S0|DNAA_MYCSK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|108767401|gb|ABG06123.1| chromosomal replication initiator protein DnaA [Mycobacterium sp.
           MCS]
 gi|119692155|gb|ABL89228.1| chromosomal replication initiator protein DnaA [Mycobacterium sp.
           KMS]
 gi|126232414|gb|ABN95814.1| chromosomal replication initiator protein DnaA [Mycobacterium sp.
           JLS]
          Length = 495

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 93/251 (37%), Gaps = 26/251 (10%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSG 74
           +  P+    +   +       + D  ++ ++   A     +    P+R    + + G SG
Sbjct: 140 SRPPETPAAEDPNAVSLNRRYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESG 199

Query: 75  SGKSCLANIWSDKSRS---------TRFSNIAKSLDSILIDTRKP-----------VLLE 114
            GK+ L +   + ++                     + L D RK            +L++
Sbjct: 200 LGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKASFKRSYRDIDVLLVD 259

Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DI  ++  +    + FH  N++H  +  +++++   P         L +R +   +  + 
Sbjct: 260 DIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQ 319

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            P+ +    ++ K     ++ +   +   I   +ER++   E  + ++   A      I 
Sbjct: 320 PPELETRIAILRKKAQMDRLDVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPID 379

Query: 232 RSLAAEVLKET 242
           +SLA  VL++ 
Sbjct: 380 KSLAEIVLRDL 390


>gi|118474040|ref|YP_891139.1| chromosomal replication initiation protein [Mycobacterium smegmatis
           str. MC2 155]
 gi|152013510|sp|A0R7K1|DNAA_MYCS2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|152013511|sp|P0C557|DNAA_MYCSM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|1321893|emb|CAA63248.1| dnaA [Mycobacterium smegmatis]
 gi|118175327|gb|ABK76223.1| chromosomal replication initiator protein DnaA [Mycobacterium
           smegmatis str. MC2 155]
          Length = 504

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 88/232 (37%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS--- 90
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +   + ++    
Sbjct: 168 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFP 227

Query: 91  ------TRFSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFHII 130
                            + L D RK            +L++DI  ++  +    + FH  
Sbjct: 228 GMRVKYVSTEEFTNDFINSLRDDRKASFKRSYRDIDILLVDDIQFIEGKEGIQEEFFHTF 287

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     +
Sbjct: 288 NTLHNSNKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDR 347

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +   +   I   +ER++   E  + ++   A      I RSLA  VL++ 
Sbjct: 348 LDVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTRIDRSLAEVVLRDL 399


>gi|15595199|ref|NP_064721.1| chromosomal replication initiation protein [Pseudomonas aeruginosa
           PAO1]
 gi|116053721|ref|YP_788156.1| chromosomal replication initiation protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218888747|ref|YP_002437611.1| chromosomal replication initiation protein [Pseudomonas aeruginosa
           LESB58]
 gi|254243115|ref|ZP_04936437.1| chromosomal replication initiator protein DnaA [Pseudomonas
           aeruginosa 2192]
 gi|14194675|sp|Q9I7C5|DNAA_PSEAE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|122262144|sp|Q02V80|DNAA_PSEAB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735834|sp|B7V0N6|DNAA_PSEA8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|9945819|gb|AAG03391.1|AE004440_1 chromosomal replication initiator protein DnaA [Pseudomonas
           aeruginosa PAO1]
 gi|11067000|gb|AAG28797.1|AF229442_1 DnaA [Pseudomonas aeruginosa]
 gi|115588942|gb|ABJ14957.1| chromosomal replication initiator protein DnaA [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126196493|gb|EAZ60556.1| chromosomal replication initiator protein DnaA [Pseudomonas
           aeruginosa 2192]
 gi|218768970|emb|CAW24728.1| chromosomal replication initiator protein DnaA [Pseudomonas
           aeruginosa LESB58]
          Length = 514

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 183 FTFENFVEGKSNQLARAA--AWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 298

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 299 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAE 358

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +I +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 359 QAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDL 413


>gi|304382865|ref|ZP_07365348.1| DNA-directed DNA replication initiator protein [Prevotella marshii
           DSM 16973]
 gi|304336050|gb|EFM02297.1| DNA-directed DNA replication initiator protein [Prevotella marshii
           DSM 16973]
          Length = 489

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 80/262 (30%), Gaps = 35/262 (13%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVI 68
           P       P+  E QL          +  + +   + +        + +         + 
Sbjct: 136 PSVLDAAMPQQIESQL------NPHQTFRNFIEGDSNKLPRSVGMSIAEHPEGTQFNPMF 189

Query: 69  LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107
           + GPSG GK+ L                     A ++  +  +    N           T
Sbjct: 190 IYGPSGCGKTHLINAIGVRTKELYPEKRVLYISARLFQVQFTNAVLQNSTNDF-INFYQT 248

Query: 108 RKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI             FHI N + +    +++     PV        L +R   
Sbjct: 249 IDLLLVDDIQEWMTATKTQDTFFHIFNHLFRNGKRIVLACDRPPVELKGMNDRLLTRFSC 308

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             + ++  P+      ++        + I   +  YI Q    S+   + +V+ +   ++
Sbjct: 309 GLIAELERPNVQLCRNILDTEIRREGLKIPADVVEYIAQTANESVRDLQGVVNSLMAYSV 368

Query: 225 SRGMGITRSLAAEVLKETQQCD 246
                I   LA  V+K   + D
Sbjct: 369 VYNSNIDMRLAERVIKRAVKVD 390


>gi|313111477|ref|ZP_07797278.1| chromosomal replication initiator protein DnaA [Pseudomonas
           aeruginosa 39016]
 gi|310883780|gb|EFQ42374.1| chromosomal replication initiator protein DnaA [Pseudomonas
           aeruginosa 39016]
          Length = 512

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 181 FTFENFVEGKSNQLARAA--AWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 238

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 239 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 296

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 297 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAE 356

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +I +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 357 QAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDL 411


>gi|118615920|ref|YP_904252.1| chromosomal replication initiation protein [Mycobacterium ulcerans
           Agy99]
 gi|166214684|sp|A0PKB2|DNAA_MYCUA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|118568030|gb|ABL02781.1| chromosomal replication initiator protein DnaA [Mycobacterium
           ulcerans Agy99]
          Length = 510

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 174 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 232

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 233 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 292

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 293 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 352

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 353 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 405


>gi|145628065|ref|ZP_01783866.1| chromosomal replication initiation protein [Haemophilus influenzae
           22.1-21]
 gi|144979840|gb|EDJ89499.1| chromosomal replication initiation protein [Haemophilus influenzae
           22.1-21]
 gi|301169719|emb|CBW29320.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Haemophilus influenzae
           10810]
          Length = 454

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I ++K  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI N+
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|329123016|ref|ZP_08251587.1| DNA-directed DNA replication initiator protein [Haemophilus
           aegyptius ATCC 11116]
 gi|327471947|gb|EGF17387.1| DNA-directed DNA replication initiator protein [Haemophilus
           aegyptius ATCC 11116]
          Length = 454

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I +DK  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    +I   +                +L++DI      +    + FHI N+
Sbjct: 185 RVLYIHANNFMQHMIKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|219846957|ref|YP_002461390.1| chromosomal replication initiation protein [Chloroflexus aggregans
           DSM 9485]
 gi|254777892|sp|B8GBK7|DNAA_CHLAD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|219541216|gb|ACL22954.1| chromosomal replication initiator protein DnaA [Chloroflexus
           aggregans DSM 9485]
          Length = 478

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 87/251 (34%), Gaps = 31/251 (12%)

Query: 23  NKEEQLFFSFPRC-----LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSG 74
            +  QL  +            +    +V S+   A     +    P +    + L G  G
Sbjct: 122 ERAVQLDLASAMRSGMLNPRYTFASFIVGSSNRLAHAACLAVADNPGQAYNPLFLYGGVG 181

Query: 75  SGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV------------------LLE 114
            GK+ L +   ++   R    + +  S +    D    +                  L++
Sbjct: 182 LGKTHLLHAIGNRVLDRDPEINVLYVSSEKFTNDLINAIRRQQTEEFRMRYRNIDVLLID 241

Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DI  +   D    + FH  N++H     +++++   P +       L SR +   +V + 
Sbjct: 242 DIQFIAGKDATQEEFFHTFNTLHSAAKHIVISSDRPPKAILTLEERLRSRFEWGLIVDVQ 301

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            PD +    ++        + +  ++  ++  +++ ++   E  ++++   A    + IT
Sbjct: 302 PPDLETRTAILRAKAEQMSVHVPDEVIDFLAHKIQSNIRELEGSLNRVAAYAELNRLPIT 361

Query: 232 RSLAAEVLKET 242
              A   L + 
Sbjct: 362 IDTATAALADL 372


>gi|323463201|gb|ADX75354.1| chromosomal replication initiator protein DnaA [Staphylococcus
           pseudintermedius ED99]
          Length = 447

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 97/270 (35%), Gaps = 35/270 (12%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGIS---------RDDLLVHSAIE---QAVRLID 57
           F   +  +     +   QL  S P    +S          +  ++         A   + 
Sbjct: 78  FITEEDLQELNVASSSHQLGHSTPVEPVVSGEQFNTNNTFETFVIGPGNRFPHAASLAVA 137

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSL 100
             P+     + + G  G GK+ L +                   S+K  +    +I  + 
Sbjct: 138 ESPANAYNPLFIYGGVGLGKTHLMHAIGHYVLENNPDAKVLYTSSEKFTNEFIQSIRNND 197

Query: 101 DSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                +  + +   L++DI  +   +    + FH  N +HQ    +++++   P      
Sbjct: 198 TESFREKYRNIDILLIDDIQFIQKKEQTQEEFFHTFNDLHQNKKQIVISSDRPPKEISTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +V I+ PD +    ++ K   +  + I  +   YI  +++ ++   E 
Sbjct: 258 EERLKSRFQWGLIVDITPPDFETRMAILQKKTEEENLDIPIESLTYIANQIQTNIRELEG 317

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            + ++   +  +G  IT  L A+ LK+  Q
Sbjct: 318 ALTRVLAYSKLQGKPITTELTADALKDIIQ 347


>gi|229015406|ref|ZP_04172412.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH1273]
 gi|229026930|ref|ZP_04183253.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH1272]
 gi|228734388|gb|EEL85059.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH1272]
 gi|228745885|gb|EEL95881.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH1273]
          Length = 446

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 86/232 (37%), Gaps = 26/232 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             + I  ++  YI  +++ ++   E  + ++   +      I   LAAE LK
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALK 343


>gi|329894830|ref|ZP_08270630.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC3088]
 gi|328922724|gb|EGG30058.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC3088]
          Length = 483

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDK 87
              S +  +   + + A+         P      + + G  G GK+ L +        D 
Sbjct: 150 EHYSFESFVEGKSNQLALAAARQVKDNPGFAYNPLFIYGGVGLGKTHLMHAVGNALRQDN 209

Query: 88  SRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFHI 129
             +      ++   + ++                    +L++DI      +    + FH 
Sbjct: 210 PNANIIYLHSERFVADMVKALQLNAISDFKRYYRSVDALLIDDIQFFAGKERSQEEFFHT 269

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++ +    +++T   +P         L SR      V +  P+ +    +++K     
Sbjct: 270 FNALLEGGHQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAHQI 329

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +F+ +  A +I QR+  ++   E  + ++   A      I  ++  + LK+ 
Sbjct: 330 GVFLPEDAAFFIAQRIRSNVRELEGALKRVIASAHFHQKPIDIAMVKDSLKDL 382


>gi|328676079|gb|AEB26949.1| Chromosomal replication initiator protein DnaA [Francisella cf.
           novicida Fx1]
          Length = 463

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 120 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 179

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 180 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 239

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 240 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 299

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 300 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 359

Query: 240 KET 242
           ++ 
Sbjct: 360 RDV 362


>gi|194323922|ref|ZP_03057697.1| chromosomal replication initiator protein DnaA [Francisella
           tularensis subsp. novicida FTE]
 gi|194321819|gb|EDX19302.1| chromosomal replication initiator protein DnaA [Francisella
           tularensis subsp. novicida FTE]
          Length = 463

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 120 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 179

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 180 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 239

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 240 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 299

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 300 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 359

Query: 240 KET 242
           ++ 
Sbjct: 360 RDV 362


>gi|167011107|ref|ZP_02276038.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. holarctica FSC200]
          Length = 432

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387

Query: 240 KET 242
           ++ 
Sbjct: 388 RDV 390


>gi|187930914|ref|YP_001890898.1| chromosomal replication initiation protein [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|208780099|ref|ZP_03247442.1| chromosomal replication initiator protein DnaA [Francisella
           novicida FTG]
 gi|224458007|ref|ZP_03666480.1| chromosomal replication initiator protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254875662|ref|ZP_05248372.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|290953775|ref|ZP_06558396.1| chromosomal replication initiation protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312853|ref|ZP_06803584.1| chromosomal replication initiation protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|187711823|gb|ACD30120.1| chromosomal replication initiator protein DnaA [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|208744103|gb|EDZ90404.1| chromosomal replication initiator protein DnaA [Francisella
           novicida FTG]
 gi|254841661|gb|EET20097.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. tularensis MA00-2987]
          Length = 463

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 120 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 179

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 180 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 239

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 240 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 299

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 300 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 359

Query: 240 KET 242
           ++ 
Sbjct: 360 RDV 362


>gi|134301170|ref|YP_001121138.1| chromosomal replication initiation protein [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|166201884|sp|A4IVR6|DNAA_FRATW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|134048947|gb|ABO46018.1| chromosomal replication initiator protein DnaA [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 491

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387

Query: 240 KET 242
           ++ 
Sbjct: 388 RDV 390


>gi|118496616|ref|YP_897666.1| chromosomal replication initiator protein [Francisella tularensis
           subsp. novicida U112]
 gi|166201883|sp|A0Q3U7|DNAA_FRATN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|118422522|gb|ABK88912.1| chromosomal replication initiator protein [Francisella novicida
           U112]
          Length = 491

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387

Query: 240 KET 242
           ++ 
Sbjct: 388 RDV 390


>gi|115313982|ref|YP_762705.1| chromosomal replication initiation protein [Francisella tularensis
           subsp. holarctica OSU18]
 gi|122325952|sp|Q0BPB6|DNAA_FRATO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|115128881|gb|ABI82068.1| DNA-directed DNA replication initiator protein [Francisella
           tularensis subsp. holarctica OSU18]
          Length = 491

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387

Query: 240 KET 242
           ++ 
Sbjct: 388 RDV 390


>gi|89255450|ref|YP_512811.1| chromosomal replication initiation protein [Francisella tularensis
           subsp. holarctica LVS]
 gi|254366860|ref|ZP_04982898.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. holarctica 257]
 gi|123287421|sp|Q2A640|DNAA_FRATH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|89143281|emb|CAJ78442.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. holarctica LVS]
 gi|134252688|gb|EBA51782.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. holarctica 257]
          Length = 491

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387

Query: 240 KET 242
           ++ 
Sbjct: 388 RDV 390


>gi|169656467|ref|YP_001427435.2| chromosomal replication initiation protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|61212486|sp|Q5NIQ8|DNAA_FRATT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189044725|sp|A7N926|DNAA_FRATF RecName: Full=Chromosomal replication initiator protein DnaA
 gi|164551535|gb|ABU60479.2| chromosomal replication initiator protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 491

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387

Query: 240 KET 242
           ++ 
Sbjct: 388 RDV 390


>gi|56707188|ref|YP_169084.1| chromosomal replication initiation protein [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110669658|ref|YP_666215.1| chromosomal replication initiation protein [Francisella tularensis
           subsp. tularensis FSC198]
 gi|254368432|ref|ZP_04984449.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. holarctica FSC022]
 gi|254371402|ref|ZP_04987403.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254372003|ref|ZP_04987496.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|254375145|ref|ZP_04990625.1| chromosomal replication initiator protein dnaA [Francisella
           novicida GA99-3548]
 gi|56603680|emb|CAG44634.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110319991|emb|CAL08017.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151569641|gb|EDN35295.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. tularensis FSC033]
 gi|151569734|gb|EDN35388.1| chromosomal replication initiator protein dnaA [Francisella
           novicida GA99-3549]
 gi|151572863|gb|EDN38517.1| chromosomal replication initiator protein dnaA [Francisella
           novicida GA99-3548]
 gi|157121326|gb|EDO65527.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. holarctica FSC022]
 gi|282158287|gb|ADA77678.1| chromosomal replication initiator protein dnaA [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 506

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 163 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 222

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 223 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 282

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 283 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 342

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 343 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 402

Query: 240 KET 242
           ++ 
Sbjct: 403 RDV 405


>gi|145632379|ref|ZP_01788114.1| chromosomal replication initiation protein [Haemophilus influenzae
           3655]
 gi|144987286|gb|EDJ93816.1| chromosomal replication initiation protein [Haemophilus influenzae
           3655]
          Length = 454

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I +DK  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI NS
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|16272931|ref|NP_439156.1| chromosomal replication initiation protein [Haemophilus influenzae
           Rd KW20]
 gi|260580084|ref|ZP_05847914.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae RdAW]
 gi|319897495|ref|YP_004135692.1| chromosomal replication initiator protein dnaa, DNA-binding
           transcriptional dual regulator [Haemophilus influenzae
           F3031]
 gi|1169364|sp|P43742|DNAA_HAEIN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|1574023|gb|AAC22655.1| chromosomal replication initiator protein (dnaA) [Haemophilus
           influenzae Rd KW20]
 gi|260093368|gb|EEW77301.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae RdAW]
 gi|317433001|emb|CBY81372.1| chromosomal replication initiator protein DnaA,DNA-binding
           transcriptional dual regulator [Haemophilus influenzae
           F3031]
          Length = 454

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I +DK  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI NS
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|145637299|ref|ZP_01792960.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittHH]
 gi|145269551|gb|EDK09493.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittHH]
          Length = 454

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I +DK  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI NS
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|330470833|ref|YP_004408576.1| chromosomal replication initiator protein DnaA [Verrucosispora
           maris AB-18-032]
 gi|328813804|gb|AEB47976.1| chromosomal replication initiator protein DnaA [Verrucosispora
           maris AB-18-032]
          Length = 607

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
                 +  ++ S+   A      +   P+     + + G SG GK+ L +         
Sbjct: 270 NPKYMFETFVIGSSNRFAHAASVAVAESPAKAYNPLFIYGSSGLGKTHLLHAIGHYATTL 329

Query: 87  -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
             +RS R+ +  +  +  +   R                +L++DI  L+  +    + FH
Sbjct: 330 GNARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFH 389

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++T+   P         L +R +   +  I  PD +    ++ K  A 
Sbjct: 390 TFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQ 449

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +++    +  +I  R+  S+   E  + ++   A      +  SLA EVL++
Sbjct: 450 ERLYAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRD 502


>gi|309751341|gb|ADO81325.1| Chromosomal replication initiator protein [Haemophilus influenzae
           R2866]
          Length = 454

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I ++K  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI N+
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|326202772|ref|ZP_08192639.1| chromosomal replication initiator protein DnaA [Clostridium
           papyrosolvens DSM 2782]
 gi|325986849|gb|EGD47678.1| chromosomal replication initiator protein DnaA [Clostridium
           papyrosolvens DSM 2782]
          Length = 440

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ +    A     +    P++    + L G  G GK+ L +         
Sbjct: 104 NPKYTFDTFVIGNGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHFVLGQ 163

Query: 85  ----------SDKSRSTRFSNIAKSLDSIL---IDTRKPVLLEDIDLLDF---NDTQLFH 128
                     S+K  +   + I    +            +L++DI  +      + + FH
Sbjct: 164 NPALKVLYVSSEKFTNELINAIRDDKNEEFRYKYRNIDVLLIDDIQFIGGKERTEEEFFH 223

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 224 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIAPPDLETRIAILRKKAQL 283

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +   +  +I  ++  ++   E  ++++   +      +   +A E LK+ 
Sbjct: 284 ENLDVPDDVMVFIADKVGSNIRELEGALNRVIAYSTLTENIMNVDMAVEALKDM 337


>gi|189463957|ref|ZP_03012742.1| hypothetical protein BACINT_00292 [Bacteroides intestinalis DSM
           17393]
 gi|189438530|gb|EDV07515.1| hypothetical protein BACINT_00292 [Bacteroides intestinalis DSM
           17393]
          Length = 462

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 86/242 (35%), Gaps = 28/242 (11%)

Query: 33  PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87
           P      + +  +   + + +  + ++    P++     +   G SG GK+ LAN    K
Sbjct: 122 PHLNPEYNFETFIEGYSNKLSRSVAEAVAQNPAKTIFNPLFFYGASGVGKTHLANAIGTK 181

Query: 88  -------SRSTRFSNIA---KSLDSILIDTRKPVL-------------LEDIDLLDFNDT 124
                   R    S      +  DS+  +T    +             +++   +     
Sbjct: 182 IKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQSIDILIIDDIQEFAGVTKTQN 241

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             FHI N +HQ    L++T+   PV        L +R K   V ++  P  +  + ++  
Sbjct: 242 TFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELERPTVELRKNILRN 301

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 +    ++  YI + +  S+   E +V  +   +      I   LA  ++++  +
Sbjct: 302 KIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIYNKEIDLELAQRIVRKVVK 361

Query: 245 CD 246
            +
Sbjct: 362 SE 363


>gi|300742656|ref|ZP_07072677.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa
           M567]
 gi|300381841|gb|EFJ78403.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa
           M567]
          Length = 553

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
               + D  ++  +   A      +   P+     + + G SG GK+ L +     ++  
Sbjct: 212 NPNYTFDTFVIGQSNRFAHAAAFAVSESPAQAYNPLFIYGDSGLGKTHLLHAIGHYAKHL 271

Query: 91  -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
                 R+ N  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 272 FPSLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDMLLIDDIQFLAGKEHTQEEFFH 331

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H +   +++T+   P         + SR +   +  +  P+ +    ++ K    
Sbjct: 332 TFNALHNHQKQVVITSDLPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAILRKKAQS 391

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +   +  YI   +  ++   E  + ++   A      +  +LA  VLK+ 
Sbjct: 392 ESLNVPDDVMEYIASHITANIRELEGALIRVTAFASLNKQPVDVALAEVVLKDL 445


>gi|253698657|ref|YP_003019846.1| chromosomal replication initiation protein [Geobacter sp. M21]
 gi|259645251|sp|C6E7Q5|DNAA_GEOSM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|251773507|gb|ACT16088.1| chromosomal replication initiator protein DnaA [Geobacter sp. M21]
          Length = 460

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLA-----NIWSD 86
               + +  +   + + A     +  + P      + + G  G GK+ L      +I + 
Sbjct: 126 NPKYTFESFVSGPSNQFAYAASQAVANKPATNYNPLFIYGGVGLGKTHLVNAIGNHILAK 185

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
             ++      ++   + +I++ +                +L++DI  +   +    + FH
Sbjct: 186 NPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQFMAGKEATQEEFFH 245

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++T+  FP         L SR +   +  I  P  +    ++ K    
Sbjct: 246 TFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPGVETKVAILKKKSDM 305

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +   +A ++ +    ++   E ++ +++  A   G  IT S+A EV+K+
Sbjct: 306 HAVNLPDDVALFLAEGANSNIRELEGMLIRLEAFASLTGQEITLSMAREVMKD 358


>gi|197116403|ref|YP_002136830.1| chromosomal replication initiation protein [Geobacter bemidjiensis
           Bem]
 gi|226735813|sp|B5E7P6|DNAA_GEOBB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|197085763|gb|ACH37034.1| chromosomal replication initiator protein DnaA [Geobacter
           bemidjiensis Bem]
          Length = 458

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLA-----NIWSD 86
               + +  +   + + A     +  + P      + + G  G GK+ L      +I + 
Sbjct: 124 NPKYTFESFVSGPSNQFAYAASQAVANKPATNYNPLFIYGGVGLGKTHLVNAIGNHILAK 183

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
             ++      ++   + +I++ +                +L++DI  +   +    + FH
Sbjct: 184 NPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQFMAGKEATQEEFFH 243

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++T+  FP         L SR +   +  I  P  +    ++ K    
Sbjct: 244 TFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPGVETKVAILKKKSDM 303

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +   +A ++ +    ++   E ++ +++  A   G  IT S+A EV+K+
Sbjct: 304 HAVNLPDDVALFLAEGANSNIRELEGMLIRLEAFASLTGQEITLSMAREVMKD 356


>gi|68249578|ref|YP_248690.1| chromosomal replication initiation protein [Haemophilus influenzae
           86-028NP]
 gi|68057777|gb|AAX88030.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae 86-028NP]
          Length = 454

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I +DK  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI N+
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|306821799|ref|ZP_07455394.1| ribosomal subunit interface protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550166|gb|EFM38162.1| ribosomal subunit interface protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 442

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 83/238 (34%), Gaps = 31/238 (13%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWP--------SRVVILVGPSGSGKSCLANIWSDK 87
              + D  +  ++   A     +    P           + L G  G GK+ L +  S++
Sbjct: 101 TKYTFDAFVTGTSNNLAYAACIAVAENPAFETPKDAYNPLFLYGGVGLGKTHLMHAISNR 160

Query: 88  -------SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FNDT 124
                   + +  S+   + D I     +              +L++D+           
Sbjct: 161 IKEKNPNYKVSYISSETFTNDFIYSLQNRKTQDFRDKYRELDAILIDDVQFFADKDTTQE 220

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +LFH  N ++  +  +++++   P         L SR      + I  PD +    ++ K
Sbjct: 221 ELFHTFNELYSANKQIILSSDRPPKELTTLEDRLRSRFGMGLTIDIQPPDFETRVAILEK 280

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                +  + + +   I + ++ ++   E  ++K+   +      I+  LA EVL + 
Sbjct: 281 KCETDRKDVPRDVLNLIAKNIKANIRELEGALNKVCAYSNLMKRPISFELANEVLNDL 338


>gi|332288919|ref|YP_004419771.1| chromosomal replication initiation protein [Gallibacterium anatis
           UMN179]
 gi|330431815|gb|AEC16874.1| chromosomal replication initiation protein [Gallibacterium anatis
           UMN179]
          Length = 455

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWP----SWPSRVVILVGPSGSGKSCLAN-----IWS 85
                  + +   + + A  +               + L G +G GK+ L +     I  
Sbjct: 120 NPKYEFHNFVQGKSNQLARVVAQKVAEKIGDEGYNPLFLYGGTGLGKTHLLHAIGNGILK 179

Query: 86  DKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127
           +K  +      ++     L+   K                +L++DI      +    + F
Sbjct: 180 NKPNARVVYIHSERFVQELVKALKTETIEKFKKFYRSLDALLIDDIQFFAGKEGSQEEFF 239

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  NS+ +    +++T+  +P         L SR      V I  P+ +    +++K   
Sbjct: 240 HTFNSLFEGGRQIILTSDRYPKEIDKIEERLKSRFNWGLSVAIEPPELETRVAILLKKAE 299

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  I + +++A +I Q++  ++   E  ++++   A   G  IT     E LK+ 
Sbjct: 300 ESNIVLPEEVAFFIGQKLRTNVRELEGALNRVSANANFTGQPITIDFVRETLKDM 354


>gi|288926565|ref|ZP_06420482.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella
           buccae D17]
 gi|288336642|gb|EFC75011.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella
           buccae D17]
          Length = 469

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 80/261 (30%), Gaps = 30/261 (11%)

Query: 15  KQKNDQPKNKEEQL-FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVIL 69
           +           QL          ++ ++ +   +        + + +   +     + +
Sbjct: 111 QANKSPTALDAAQLQALDPQLNPHLTFNNYIEGDSNKLPRSIGLSIAEHPNTTQFNPMFI 170

Query: 70  VGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTR 108
            GPSG GK+ L                     A ++  +  S    N           T 
Sbjct: 171 YGPSGCGKTHLVNAIGLHAKQLYPQKRVLYVSARLFQVQYTSAVLQNTLNDF-IKFYQTI 229

Query: 109 KPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             ++++DI             FHI N + +    +++ +   PV        L +R    
Sbjct: 230 DLLIVDDIQEWMTATKTQETFFHIFNHLFKNGKRIILASDRPPVDLKGMPDRLLTRFSCG 289

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            + ++  P+      ++        + I   +  YI +    S+   E +++ +   +++
Sbjct: 290 LIAELEKPNVQLCIDILQSKIRRDGLKIPDNVVQYIAENASGSVRGLEGVINGLLAYSIT 349

Query: 226 RGMGITRSLAAEVLKETQQCD 246
               I   LA   +K     +
Sbjct: 350 YNCDINLKLAERCIKRAVNIE 370


>gi|6226596|sp|P49990|DNAA_MYCAV RecName: Full=Chromosomal replication initiator protein DnaA
 gi|3953448|gb|AAC83390.1| DnaA [Mycobacterium avium]
          Length = 508

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 90/232 (38%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSR---- 89
             + D  ++ ++   A   + +    P+R    + + G SG GK+ L +   + ++    
Sbjct: 172 RYTFDTFVIGASNRFAHAAVLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRFFP 231

Query: 90  ------------STRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFND---TQLFHII 130
                       +  F N  +    +     I     +L++DI  ++  +    + FH  
Sbjct: 232 GMRVKYVSTEEFTNDFINSLRDDRKVPFKRTIRDVDVLLVDDIQFIEGKEGIQEEFFHTF 291

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     +
Sbjct: 292 NTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMER 351

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +   +   I   +ER++   E  + ++   A      I +SLA  VL++ 
Sbjct: 352 LAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDL 403


>gi|88803646|ref|ZP_01119170.1| chromosomal replication initiation protein [Polaribacter irgensii
           23-P]
 gi|88780379|gb|EAR11560.1| chromosomal replication initiation protein [Polaribacter irgensii
           23-P]
          Length = 475

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 90/259 (34%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  QK       E QL          +  + +   +   A     +  + P      
Sbjct: 125 FVIPGLQKV----KIESQL------NPNYNFANFVEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ L++                   S+K       ++  +  +  I   
Sbjct: 175 PLLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRNDFIHFY 234

Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++D+  L          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++        + + + +  YI + ++ ++   E ++  M   
Sbjct: 295 KWGLSAELQAPDYETRISILQNKLFRDGVEMPEDIVGYIAKNIKSNVRELEGVIISMIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           A       +  LA +++ +
Sbjct: 355 ASFNRREFSLELAKQIVDK 373


>gi|330961505|gb|EGH61765.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 512

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 154 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 211

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 212 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 269

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 270 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 329

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 330 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 389

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 390 AHSHFMGRDITIELIRESLKDL 411


>gi|330806658|ref|YP_004351120.1| Chromosomal replication initiator protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327374766|gb|AEA66116.1| Chromosomal replication initiator protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 508

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 177 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 234

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 235 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 292

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 293 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 352

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 353 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 407


>gi|325294208|ref|YP_004280722.1| Chromosomal replication initiator protein dnaA [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064656|gb|ADY72663.1| Chromosomal replication initiator protein dnaA [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 469

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 88/258 (34%), Gaps = 38/258 (14%)

Query: 23  NKEEQLFFSF------------PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---V 67
           +K  QL  +                   + ++ +V +  + A     +    P +    +
Sbjct: 82  HKPLQLELNLFEVKKRKENLESNLNPKYTFENFVVGANNQFAHAAAVAVAENPGKAYNPL 141

Query: 68  ILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID--------------T 107
            + G  G GK+ L             S++  +      ++ ++                T
Sbjct: 142 FIYGGVGLGKTHLMQAIGNFIKNVSPSKTVVYITTESFMNELIDALKNDKMTEFREKYRT 201

Query: 108 RKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI  +   D    + FH  N+++     +++T+   P    +    L SR + 
Sbjct: 202 VDVLLIDDIQFISGKDGTQIEFFHTFNALYDAGKQVVLTSDRPPKDIPMLTERLRSRFEW 261

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             +  I  PD +    ++ +      I ++  +   I   ++ ++   E  + K+   A 
Sbjct: 262 GLIADIQPPDFETRIAILRRKAEAEGIEVEDSILKLIANIIKSNIRQLEGALTKLKAKAT 321

Query: 225 SRGMGITRSLAAEVLKET 242
             G  I   L  E+  ET
Sbjct: 322 LEGKPINEELVKELFSET 339


>gi|330890249|gb|EGH22910.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 343

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 12  FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNPLLKKN 69

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 70  PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 127

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 128 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 187

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 188 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 242


>gi|260581928|ref|ZP_05849724.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae NT127]
 gi|260095121|gb|EEW79013.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae NT127]
          Length = 454

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I ++K  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI NS
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|319775073|ref|YP_004137561.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Haemophilus influenzae
           F3047]
 gi|317449664|emb|CBY85870.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Haemophilus influenzae
           F3047]
          Length = 454

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I +DK  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI N+
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|229846051|ref|ZP_04466163.1| chromosomal replication initiation protein [Haemophilus influenzae
           7P49H1]
 gi|229811055|gb|EEP46772.1| chromosomal replication initiation protein [Haemophilus influenzae
           7P49H1]
          Length = 454

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I ++K  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI NS
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|310639472|ref|YP_003944230.1| atpase involved in DNA replication initiation-like protein
           [Paenibacillus polymyxa SC2]
 gi|309244422|gb|ADO53989.1| ATPase involved in DNA replication initiation-like protein
           [Paenibacillus polymyxa SC2]
          Length = 448

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 86/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ S    A     +    P++    + L G  G GK+ L +         
Sbjct: 111 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYILEH 170

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     S+K  +   + I  +      +  + +   L++DI  +   +    + FH
Sbjct: 171 NPTSKVVYLSSEKFTNEFINAIRDNRGESFRNKYRNIDILLIDDIQFIAGKESTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I  PD +    ++ K    
Sbjct: 231 TFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKARA 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  +   YI  +++ ++   E  + ++   +      ++  LAAE LK+
Sbjct: 291 ENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDVSSHLAAEALKD 343


>gi|77456229|ref|YP_345734.1| chromosomal replication initiation protein [Pseudomonas fluorescens
           Pf0-1]
 gi|123772395|sp|Q3KKG1|DNAA_PSEPF RecName: Full=Chromosomal replication initiator protein DnaA
 gi|77380232|gb|ABA71745.1| chromosomal replication initiator protein DnaA [Pseudomonas
           fluorescens Pf0-1]
          Length = 507

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 176 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 233

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 234 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 291

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 292 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 351

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 352 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 406


>gi|146280398|ref|YP_001170551.1| chromosomal replication initiation protein [Pseudomonas stutzeri
           A1501]
 gi|145568603|gb|ABP77709.1| chromosomal replication initiator protein DnaA [Pseudomonas
           stutzeri A1501]
          Length = 514

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 183 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAKKERSQEEFF 298

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 299 HTFNALLEGGQQVILTSDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 358

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   A   G  IT  L  E LK+ 
Sbjct: 359 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHAHFMGRDITIELIRESLKDL 413


>gi|145640667|ref|ZP_01796250.1| chromosomal replication initiation protein [Haemophilus influenzae
           R3021]
 gi|145274593|gb|EDK14456.1| chromosomal replication initiation protein [Haemophilus influenzae
           22.4-21]
          Length = 454

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I ++K  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI NS
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|209966320|ref|YP_002299235.1| chromosomal replication initiation protein [Rhodospirillum centenum
           SW]
 gi|209959786|gb|ACJ00423.1| chromosomal replication initiator protein DnaA [Rhodospirillum
           centenum SW]
          Length = 507

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 83/239 (34%), Gaps = 26/239 (10%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS---- 85
           P     + ++ +V    E A           +     + L G  G GK+ L +  +    
Sbjct: 171 PLDPRFTFENFVVGKPNELAFAAARRVADASAVTFNPLFLYGGVGLGKTHLMHAIAWHIR 230

Query: 86  --DKSRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQL 126
             D SR   + +  K +   +   R                ++++D+  +   D    + 
Sbjct: 231 RKDPSRRVIYLSAEKFMYQFIRALRFKDTMAFKEQFRSVDVLMIDDVQFISGKDSTQEEF 290

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         L SRL    V  I     +    ++ +  
Sbjct: 291 FHTFNALVDQNRQVIISADKSPSDLEGMEERLRSRLGWGLVADIHPTTYELRLGILQQKA 350

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                 I +K+  ++  ++  ++   E  ++++   A   G  IT     EVL +  + 
Sbjct: 351 DQMGAKIPQKVLEFLAHKITSNVRELEGALNRIVAHAELVGRAITLESTQEVLHDLLRA 409


>gi|70733514|ref|YP_257153.1| chromosomal replication initiation protein [Pseudomonas fluorescens
           Pf-5]
 gi|123776101|sp|Q4KKT0|DNAA_PSEF5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|68347813|gb|AAY95419.1| chromosomal replication initiator protein DnaA [Pseudomonas
           fluorescens Pf-5]
          Length = 513

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 182 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 239

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 240 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 297

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 298 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 357

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 358 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 412


>gi|169335349|ref|ZP_02862542.1| hypothetical protein ANASTE_01761 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258087|gb|EDS72053.1| hypothetical protein ANASTE_01761 [Anaerofustis stercorihominis DSM
           17244]
          Length = 456

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 32/236 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87
               + D  +V      A     +    P++    + + G  G GK+ L +  +      
Sbjct: 120 NPKYTFDSFVVGPNNRFAHAASLAVADAPAKKYNPLFIYGGVGLGKTHLMHAIAQHILRK 179

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
             ++     +  + L+  L                    +L++DI  +        + FH
Sbjct: 180 DPTKKVVLLSSEQFLNEFLDAIQNKTNVQFRNKYRNADVLLIDDIQFIAGKNETQNEFFH 239

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++   +  +++T+   P         L SR     +  IS+PD +    ++ K   +
Sbjct: 240 TFNALQGSNKQIILTSDKPPKEIPHLEDRLRSRFSLGLICDISMPDFETRLAILRKKAKE 299

Query: 189 RQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               +  ++  YI + +E   R L      V  ++         +T  L  + LK+
Sbjct: 300 ENYQVSNEILNYIAENIESNIRELEGLLLKVMALNEF---YNKPLTLDLVKKQLKD 352


>gi|295702243|ref|YP_003595318.1| chromosomal replication initiator protein DnaA [Bacillus megaterium
           DSM 319]
 gi|294799902|gb|ADF36968.1| chromosomal replication initiator protein DnaA [Bacillus megaterium
           DSM 319]
          Length = 447

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 98/266 (36%), Gaps = 30/266 (11%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61
           N  +E++    P K+ N     +  Q   +       + D  ++ S    A     +   
Sbjct: 83  NQAEEEFDIQAPKKKVNKDDGAEFPQSMLN----SKYTFDTFVIGSGNRFAHAASLAVAE 138

Query: 62  WPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR---- 108
            P++    + + G  G GK+ L +         + +    + +  K  +  +   R    
Sbjct: 139 APAKAYNPLFIYGGVGLGKTHLMHAIGHYVLDHNPAAKVVYLSSEKFTNEFINSIRDNKA 198

Query: 109 ----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                       +L++DI  L   +    + FH  N++H+    +++++   P       
Sbjct: 199 VEFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLE 258

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E  
Sbjct: 259 DRLRSRFEWGLITDITPPDLETRIAILRKKAKADGLVIPNEVMLYIANQIDSNIRELEGA 318

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKE 241
           + ++   +      I   LAAE LK+
Sbjct: 319 LIRVVAYSSLINKDINADLAAEALKD 344


>gi|327478613|gb|AEA81923.1| chromosomal replication initiation protein [Pseudomonas stutzeri
           DSM 4166]
          Length = 486

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 155 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 212

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 213 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAKKERSQEEFF 270

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 271 HTFNALLEGGQQVILTSDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 330

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   A   G  IT  L  E LK+ 
Sbjct: 331 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHAHFMGRDITIELIRESLKDL 385


>gi|304309653|ref|YP_003809251.1| Chromosomal replication initiator protein [gamma proteobacterium
           HdN1]
 gi|301795386|emb|CBL43584.1| Chromosomal replication initiator protein [gamma proteobacterium
           HdN1]
          Length = 477

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 30/234 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--------- 84
             + ++ +   + + A          P +    + L G  G GK+ L +           
Sbjct: 145 ASTFNNFVEGKSNQLARAAAIQVAENPGQAYNPLFLYGGVGLGKTHLMHAVGNFMVEKKP 204

Query: 85  -------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128
                        +D  ++ + + I +        +   +L++DI      +    + FH
Sbjct: 205 NAKVVFLTSEQFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAGKERSQEEFFH 262

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    ++ T   FP         L SR      V +  P+ +    ++ K    
Sbjct: 263 TFNALLEGGRQMIFTCDRFPKEINGVEERLKSRFGWGLTVAVEPPELETRVAILKKKAEQ 322

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I +    A ++ QR+  ++   E  + ++       G  IT   A E LK+ 
Sbjct: 323 ASIELPDDAAFFVAQRVRSNVRDLEGALKRITANQQFTGKPITVEFAKESLKDL 376


>gi|330876355|gb|EGH10504.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 395

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 37  QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 94

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 95  PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 152

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 153 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 212

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 213 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 272

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 273 AHSHFMGRDITIELIRESLKDL 294


>gi|289677549|ref|ZP_06498439.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. syringae FF5]
          Length = 383

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 25  QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 82

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 83  PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 140

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 141 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 200

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 201 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 260

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 261 AHSHFMGRDITIELIRESLKDL 282


>gi|327334557|gb|EGE76268.1| DNA-directed DNA replication initiator protein [Propionibacterium
           acnes HL097PA1]
          Length = 474

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 197

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 371


>gi|325275332|ref|ZP_08141283.1| chromosomal replication initiation protein [Pseudomonas sp. TJI-51]
 gi|324099523|gb|EGB97418.1| chromosomal replication initiation protein [Pseudomonas sp. TJI-51]
          Length = 340

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + D  +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 9   FTFDTFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 66

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 67  PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 124

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 125 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 184

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 185 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 239


>gi|223935395|ref|ZP_03627312.1| chromosomal replication initiator protein DnaA [bacterium Ellin514]
 gi|223895805|gb|EEF62249.1| chromosomal replication initiator protein DnaA [bacterium Ellin514]
          Length = 462

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 37/266 (13%)

Query: 12  VPDKQK---NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           +P+K K      P+    +  F+       + +  +V      A     +    P +   
Sbjct: 105 IPEKVKVVEATAPERSSGEAAFN----PKNTFETFVVGGNNNFAHAAAQAVAQAPGKSYN 160

Query: 67  -VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDT------------- 107
            + L G  G GK+ L +       S K  +      ++   +  ID              
Sbjct: 161 PLFLYGGVGLGKTHLLHAIGHHVLSHKKGARVAYVSSEKFTNEYIDAIQNNQIAKFRKKY 220

Query: 108 --RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                +L++DI  L   +    + FH  N++H+    +++T              L SR 
Sbjct: 221 RQTDVLLIDDIQFLAGKERIQEEFFHTFNALHEAHKQIVLTCDRPASEIQNLEHRLVSRF 280

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   V  +  PD +    ++ K  A   + + + +  ++  R+  ++   E  + ++ + 
Sbjct: 281 EWGLVTDLQPPDIETRMAILRKKAASMGVELPEDILNFLANRIRANIRRLEGALIRVASY 340

Query: 223 ALSRGMGITRS----LAAEVLKETQQ 244
           A   G  +T      L  EVL E  +
Sbjct: 341 ASLTGKKLTIEVVEGLLREVLHEEGR 366


>gi|225181147|ref|ZP_03734593.1| chromosomal replication initiator protein DnaA [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168116|gb|EEG76921.1| chromosomal replication initiator protein DnaA [Dethiobacter
           alkaliphilus AHT 1]
          Length = 454

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 93/264 (35%), Gaps = 27/264 (10%)

Query: 4   MKEDYSFFVPDKQKNDQPKNKEEQLFFSFP-RCLGISRDDLLVHSAIEQAVRL---IDSW 59
           + ED +F    +++      + E+   S        + D  ++ ++   A      +   
Sbjct: 84  INEDETFDTSGEKETAPRLKQVEEPKLSSSWLNPKYTFDTFVIGNSNRFAHAASLAVSEA 143

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL--------------DSILI 105
           P+     + + G  G GK+ L +           S     +              D+  +
Sbjct: 144 PARAYNPLFIYGGVGLGKTHLMHAIGHHVLENIPSYRVLYISSEKFTNEFINSIRDNKTV 203

Query: 106 DTRK------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
           D R        +L++DI  L   +    + FH  N++H+ +  +++++   P        
Sbjct: 204 DFRNKYRNIDVLLIDDIQFLAGKEQTQEEFFHTFNALHENNKQIIISSDRPPKEIPTLED 263

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR +   +  I  PD +    ++ K     +I +   +  YI   +  ++   E   
Sbjct: 264 RLRSRFEWGLITDIQSPDLETRIAILRKKAHSEKITVANDVMLYIANNIVTNIRELEGAF 323

Query: 217 DKMDNLALSRGMGITRSLAAEVLK 240
            ++   +      I  SLA E L+
Sbjct: 324 IRVIAYSSLTNRNIDVSLAEEALQ 347


>gi|240172091|ref|ZP_04750750.1| chromosomal replication initiation protein [Mycobacterium kansasii
           ATCC 12478]
          Length = 514

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 178 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYTQRLF 236

Query: 94  SNI---AKSLDSILIDTRKP------------------VLLEDIDLLDFND---TQLFHI 129
             +     S +    D                      +L++DI  ++  +    + FH 
Sbjct: 237 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 296

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 297 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 356

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 357 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 409


>gi|149182290|ref|ZP_01860769.1| chromosomal replication initiation protein [Bacillus sp. SG-1]
 gi|148849982|gb|EDL64153.1| chromosomal replication initiation protein [Bacillus sp. SG-1]
          Length = 448

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 29/262 (11%)

Query: 6   EDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65
           E++   VP K+  D    +E Q             D  ++ S    A     +    P++
Sbjct: 87  EEFDIPVPPKKVVDNDDGQEFQQNM---LNPKYMFDTFVIGSGNRFAHAASLAVAEAPAK 143

Query: 66  V---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL--------------DSILIDTR 108
               + + G  G GK+ L +           +     L              D+  +D R
Sbjct: 144 AYNPLFIYGGVGLGKTHLMHAIGHYVLEHNPAAKVVYLSSEKFTNEFINSIRDNKAVDFR 203

Query: 109 K------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
                   +L++DI  L   +    + FH  N++H+    +++++   P         L 
Sbjct: 204 NKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLR 263

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SR +   +  I+ PD +    ++ K      + I  +   YI  +++ ++   E  + ++
Sbjct: 264 SRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEAMLYIANQIDSNIRELEGALIRV 323

Query: 220 DNLALSRGMGITRSLAAEVLKE 241
              +      I   LAAE LK+
Sbjct: 324 VAYSSLINKDINADLAAEALKD 345


>gi|317503721|ref|ZP_07961737.1| DNA-directed DNA replication initiator protein [Prevotella salivae
           DSM 15606]
 gi|315665164|gb|EFV04815.1| DNA-directed DNA replication initiator protein [Prevotella salivae
           DSM 15606]
          Length = 468

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 89/262 (33%), Gaps = 35/262 (13%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS-RVVI 68
           P  + + Q  + + QL         ++  + +  ++ + A  L   I   P+ P    + 
Sbjct: 115 PSSKDDTQVADIDTQL------DPHLNFKNYVEGTSNKLARSLGLSIAEHPAQPQFNPMF 168

Query: 69  LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107
           + GPSG GK+ L                     A ++  +     F             T
Sbjct: 169 IYGPSGCGKTHLINAIGLRCKQLYPEKRVLYISARLFQTQFVDANFHGSINDF-IRFYQT 227

Query: 108 RKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              ++++DI             FHI N + +    +L+ +   PV        L +R   
Sbjct: 228 IDMLIVDDIQEWVNATKTQDTFFHIFNHLFRNGKRMLLASDRPPVDLKGMNERLLTRFSC 287

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             + ++  P+ +    ++        + I  ++  +I      S+   E +++ +   ++
Sbjct: 288 GLIAELEKPNVELCTDILKSKIRRDGLHIPDEVIQFIASTANGSVRDLEGVINSLLAYSV 347

Query: 225 SRGMGITRSLAAEVLKETQQCD 246
                I   LA  V+K   + D
Sbjct: 348 VYNSDIDMRLAERVIKRAVKID 369


>gi|145638185|ref|ZP_01793795.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittII]
 gi|145272514|gb|EDK12421.1| chromosomal replication initiation protein [Haemophilus influenzae
           PittII]
          Length = 454

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I ++K  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI N+
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|229843947|ref|ZP_04464088.1| chromosomal replication initiation protein [Haemophilus influenzae
           6P18H1]
 gi|229812941|gb|EEP48629.1| chromosomal replication initiation protein [Haemophilus influenzae
           6P18H1]
          Length = 454

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I ++K  +
Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI N+
Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353


>gi|313815417|gb|EFS53131.1| replication initiator protein DnaA [Propionibacterium acnes
           HL059PA1]
 gi|314916213|gb|EFS80044.1| replication initiator protein DnaA [Propionibacterium acnes
           HL005PA4]
 gi|314921816|gb|EFS85647.1| replication initiator protein DnaA [Propionibacterium acnes
           HL050PA3]
 gi|314955285|gb|EFS99690.1| replication initiator protein DnaA [Propionibacterium acnes
           HL027PA1]
 gi|314959158|gb|EFT03260.1| replication initiator protein DnaA [Propionibacterium acnes
           HL002PA1]
 gi|315102317|gb|EFT74293.1| replication initiator protein DnaA [Propionibacterium acnes
           HL046PA1]
 gi|327454252|gb|EGF00907.1| replication initiator protein DnaA [Propionibacterium acnes
           HL087PA3]
 gi|327456312|gb|EGF02967.1| replication initiator protein DnaA [Propionibacterium acnes
           HL083PA2]
 gi|328756010|gb|EGF69626.1| replication initiator protein DnaA [Propionibacterium acnes
           HL087PA1]
 gi|328758853|gb|EGF72469.1| replication initiator protein DnaA [Propionibacterium acnes
           HL025PA2]
          Length = 474

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 197

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 371


>gi|313806856|gb|EFS45354.1| replication initiator protein DnaA [Propionibacterium acnes
           HL087PA2]
 gi|313811769|gb|EFS49483.1| replication initiator protein DnaA [Propionibacterium acnes
           HL083PA1]
 gi|313824524|gb|EFS62238.1| replication initiator protein DnaA [Propionibacterium acnes
           HL036PA2]
 gi|313826193|gb|EFS63907.1| replication initiator protein DnaA [Propionibacterium acnes
           HL063PA1]
 gi|313829189|gb|EFS66903.1| replication initiator protein DnaA [Propionibacterium acnes
           HL063PA2]
 gi|313832303|gb|EFS70017.1| replication initiator protein DnaA [Propionibacterium acnes
           HL007PA1]
 gi|313832763|gb|EFS70477.1| replication initiator protein DnaA [Propionibacterium acnes
           HL056PA1]
 gi|313839622|gb|EFS77336.1| replication initiator protein DnaA [Propionibacterium acnes
           HL086PA1]
 gi|314975198|gb|EFT19293.1| replication initiator protein DnaA [Propionibacterium acnes
           HL053PA1]
 gi|314977611|gb|EFT21706.1| replication initiator protein DnaA [Propionibacterium acnes
           HL045PA1]
 gi|314990686|gb|EFT34777.1| replication initiator protein DnaA [Propionibacterium acnes
           HL005PA3]
 gi|315078993|gb|EFT51005.1| replication initiator protein DnaA [Propionibacterium acnes
           HL053PA2]
 gi|315088015|gb|EFT59991.1| replication initiator protein DnaA [Propionibacterium acnes
           HL072PA1]
 gi|327332500|gb|EGE74235.1| DNA-directed DNA replication initiator protein [Propionibacterium
           acnes HL096PA2]
 gi|327333673|gb|EGE75390.1| DNA-directed DNA replication initiator protein [Propionibacterium
           acnes HL096PA3]
 gi|327448835|gb|EGE95489.1| replication initiator protein DnaA [Propionibacterium acnes
           HL043PA1]
 gi|328759811|gb|EGF73402.1| DNA-directed DNA replication initiator protein [Propionibacterium
           acnes HL099PA1]
          Length = 474

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 197

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 371


>gi|149278936|ref|ZP_01885070.1| chromosomal replication initiator protein [Pedobacter sp. BAL39]
 gi|149230215|gb|EDM35600.1| chromosomal replication initiator protein [Pedobacter sp. BAL39]
          Length = 490

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 80/231 (34%), Gaps = 27/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIW--------- 84
            + ++ +       A     +  + P       +++ G  G GK+ LA            
Sbjct: 157 YTFENYIEGDCNRLARSAGYAVAAKPGGTSFNPLMIYGGVGLGKTHLAQAIGNEIKRNMP 216

Query: 85  --------SDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQ---LFHII 130
                    +K       ++  +  +  ++  +    ++++D+      +      FHI 
Sbjct: 217 DKLVIYVSCEKFCQQFVDSLKNNTINDFVNFYQAMDVIIMDDVHNFSGKEKTQDIFFHIF 276

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +HQ    +++++   P         L SR K      + +PD +    ++ K      
Sbjct: 277 NHLHQSGKQIILSSDKSPKDLVGLEERLLSRFKWGLSADLQVPDLETRIAILKKKMYADG 336

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           I +  ++  Y+   ++ ++   E  +  +   +      I   LA ++LK 
Sbjct: 337 IELPAEVVEYVAHNIDNNVRELEGAMVSLLAQSTLNKKDIDLDLAKQMLKN 387


>gi|66043272|ref|YP_233113.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. syringae B728a]
 gi|81308685|sp|Q500U7|DNAA_PSEU2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|63253979|gb|AAY35075.1| chromosomal replication initiator protein, DnaA [Pseudomonas
           syringae pv. syringae B728a]
 gi|330970325|gb|EGH70391.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 511

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|330976402|gb|EGH76459.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 511

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|330937300|gb|EGH41308.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 511

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|254515869|ref|ZP_05127929.1| chromosomal replication initiator protein DnaA [gamma
           proteobacterium NOR5-3]
 gi|219675591|gb|EED31957.1| chromosomal replication initiator protein DnaA [gamma
           proteobacterium NOR5-3]
          Length = 483

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 30/233 (12%)

Query: 38  ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW---------- 84
            +  + +   + + A+     +   P      + L G  G GK+ L +            
Sbjct: 152 YTFSNFVEGKSNQLALAAANQVSENPGGAYNPLFLYGGVGLGKTHLMHAVGNALKINKPN 211

Query: 85  ------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQLFHI 129
                       +D  ++ + + IA         +   +L++DI      D +  + FH 
Sbjct: 212 ARIVYLHSERFVADMVKALQLNAIADFKR--YYRSVDALLIDDIQFFAKKDRSQEEFFHT 269

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++ +    +++T   +P         L SR      V +  PD +    +++   +  
Sbjct: 270 FNALLEGGQQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPDLETRVAILMNKASQA 329

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +    A +I QR+  ++   E  + ++   A      I   L  E LK+ 
Sbjct: 330 RLDLPPDAAFFIAQRIRSNVRELEGALKRVIASANFTRRPIDVDLVKESLKDL 382


>gi|330964181|gb|EGH64441.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 511

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|331017725|gb|EGH97781.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 395

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 37  QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 94

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 95  PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 152

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 153 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 212

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 213 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 272

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 273 AHSHFMGRDITIELIRESLKDL 294


>gi|163814987|ref|ZP_02206374.1| hypothetical protein COPEUT_01140 [Coprococcus eutactus ATCC 27759]
 gi|158449670|gb|EDP26665.1| hypothetical protein COPEUT_01140 [Coprococcus eutactus ATCC 27759]
          Length = 454

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 84/240 (35%), Gaps = 28/240 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSD---- 86
               + ++ +V  + + A     +    P       + L G SG GK+ L    +     
Sbjct: 115 RPDYTFENFIVGESNKHAHATCLAVADSPGQDKFNPLFLYGESGLGKTHLMQSIAHYILQ 174

Query: 87  -------------KSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLL---DFNDTQLF 127
                        +  +     IAK       +  +    +L++DI  L   D    + F
Sbjct: 175 HNSNMKVLYVSSNQFTNEIIEAIAKKTTEEFRNKYRKVDVLLIDDIQYLIGKDATQNEFF 234

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
              N++H     +++++   P           SR +    + I  PD +    ++     
Sbjct: 235 DTFNALHDEGKQIILSSDKPPKEIKTLDVRYRSRFEWGVPIDIHAPDYETRMAILKNKAE 294

Query: 188 DRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            + +  I + +  YI + +  ++   E  ++K+   +    + IT  LA  +LK+    D
Sbjct: 295 IKGLKNISEPIFEYIAKNITYNVRELEGALNKLSIYSELGHIKITEDLAKNILKDLISKD 354


>gi|315441697|ref|YP_004074576.1| chromosomal replication initiator protein DnaA [Mycobacterium sp.
           Spyr1]
 gi|315260000|gb|ADT96741.1| chromosomal replication initiator protein DnaA [Mycobacterium sp.
           Spyr1]
          Length = 492

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 89/233 (38%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
             + +  ++ ++   A      I   P+     + + G SG GK+ L +  +       F
Sbjct: 156 RYTFETFVIGASNRFAHAASLAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 214

Query: 94  SNI-----------AKSLDSILIDTRKP----------VLLEDIDLLDFND---TQLFHI 129
             +              ++S+  D R            +L++DI  ++  D    + FH 
Sbjct: 215 PGMRVKYVSTEEFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGIQEEFFHT 274

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 275 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMD 334

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I  R+ER++   E  + ++   A      I +SLA  VL++ 
Sbjct: 335 RLDVPDDVLELIASRIERNIRELEGALIRVTAFASLNKTSIDKSLAEIVLRDL 387


>gi|157414323|ref|YP_001481579.1| chromosomal replication initiation protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|172046981|sp|A8FJG5|DNAA_CAMJ8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157385287|gb|ABV51602.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 81116]
          Length = 440

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVI----LVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +         +     + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAISQKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|145592567|ref|YP_001156864.1| chromosomal replication initiator protein DnaA [Salinispora tropica
           CNB-440]
 gi|145301904|gb|ABP52486.1| chromosomal replication initiator protein DnaA [Salinispora tropica
           CNB-440]
          Length = 587

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
                 +  ++ S+   A      +   P+     + + G SG GK+ L +         
Sbjct: 250 NPKYMFETFVIGSSNRFAHAASVAVAESPAKAYNPLFIYGSSGLGKTHLLHAIGHYATTL 309

Query: 87  -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
             + S R+ +  +  +  +   R                +L++DI  L+  +    + FH
Sbjct: 310 GNANSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFH 369

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++T+   P         L +R +   +  I  PD +    ++ K  A 
Sbjct: 370 TFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQ 429

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++F    +  +I  R+  S+   E  + ++   A      +  SLA EVL++
Sbjct: 430 ERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRD 482


>gi|108802857|ref|YP_642794.1| chromosomal replication initiator protein DnaA [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764100|gb|ABG02982.1| chromosomal replication initiator protein DnaA [Rubrobacter
           xylanophilus DSM 9941]
          Length = 450

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 90/256 (35%), Gaps = 28/256 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68
            +++       E  L    PR      + D  ++ +    A     +    P      + 
Sbjct: 90  GREETSAETGAESVLSARTPRSLKAKYTFDSFVIGAGNRFAHAAALAVAENPGVVYNPLF 149

Query: 69  LVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID--------------TR 108
           + G  G GK+ L           D +   R+    +  +  +                  
Sbjct: 150 IYGGVGLGKTHLLRAVGHYVEDQDPTMRVRYVTCEQFTNDFINSMRDNAPLEFQKRYREN 209

Query: 109 KPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI   +         FH  N++++ +  +++ +   P         L SR +  
Sbjct: 210 DVLLIDDIQFLENKVETQEAFFHTFNALYEENKQIVIASDRHPKYLQTLENRLVSRFEWG 269

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            V  I  PD +    ++ K     ++ +D ++  +I  ++  ++   E  + ++   A  
Sbjct: 270 LVTDIQPPDLETRIAILRKKAMMDRLEVDDEVLTFIASKVSTNIRELEGALVRILAYASL 329

Query: 226 RGMGITRSLAAEVLKE 241
            G  +T +LA EVL++
Sbjct: 330 YGRQVTVALAEEVLRD 345


>gi|330952332|gb|EGH52592.1| chromosomal replication initiation protein [Pseudomonas syringae
           Cit 7]
          Length = 388

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 30  QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 87

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 88  PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 145

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 146 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 205

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 206 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 265

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 266 AHSHFMGRDITIELIRESLKDL 287


>gi|145221421|ref|YP_001132099.1| chromosomal replication initiation protein [Mycobacterium gilvum
           PYR-GCK]
 gi|145213907|gb|ABP43311.1| chromosomal replication initiator protein DnaA [Mycobacterium
           gilvum PYR-GCK]
          Length = 492

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--- 90
             + +  ++ ++   A      I   P+     + + G SG GK+ L +   + ++    
Sbjct: 156 RYTFETFVIGASNRFAHAASLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFP 215

Query: 91  ------TRFSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFHII 130
                            + L D R+            +L++DI  ++  D    + FH  
Sbjct: 216 GMRVKYVSTEEFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGIQEEFFHTF 275

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     +
Sbjct: 276 NTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDR 335

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +   +   I  R+ER++   E  + ++   A      I +SLA  VL++ 
Sbjct: 336 LDVPDDVLELIASRIERNIRELEGALIRVTAFASLNKTSIDKSLAEIVLRDL 387


>gi|319893740|ref|YP_004150615.1| Chromosomal replication initiator protein DnaA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163436|gb|ADV06979.1| Chromosomal replication initiator protein DnaA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 447

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 26/231 (11%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------------ 84
            +  ++         A   +   P+     + + G  G GK+ L +              
Sbjct: 117 FETFVIGPGNRFPHAASLAVAESPANAYNPLFIYGGVGLGKTHLMHAIGHYVLENNPDAK 176

Query: 85  -----SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSI 133
                S+K  +    +I  +      +  + +   L++DI  +   +    + FH  N +
Sbjct: 177 VLYTSSEKFTNEFIQSIRNNDTESFREKYRNIDILLIDDIQFIQKKEQTQEEFFHTFNDL 236

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
           HQ    +++++   P         L SR +   +V I+ PD +    ++ K   +  + I
Sbjct: 237 HQNKKQIVISSDRPPKEISTLEERLKSRFQWGLIVDITPPDFETRMAILQKKTEEENLDI 296

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             +   YI  +++ ++   E  + ++   +  +G  IT  L A+ LK+  Q
Sbjct: 297 PIESLTYIANQIQTNIRELEGALTRVLAYSKLQGKPITTELTADALKDIIQ 347


>gi|314965762|gb|EFT09861.1| replication initiator protein DnaA [Propionibacterium acnes
           HL082PA2]
          Length = 474

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 197

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 371


>gi|289628214|ref|ZP_06461168.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289649104|ref|ZP_06480447.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330870075|gb|EGH04784.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 511

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|237801664|ref|ZP_04590125.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331024523|gb|EGI04579.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 511

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|195973856|gb|ACG63493.1| chromosomal replication initiator protein DnaA [Francisella
           noatunensis]
          Length = 434

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 88/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           ++  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 116 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 175

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   + ++DI  +   
Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIAGK 235

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 295

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 296 AILLKKAYDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 355

Query: 240 KET 242
           ++ 
Sbjct: 356 RDV 358


>gi|330987019|gb|EGH85122.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 511

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|302185840|ref|ZP_07262513.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. syringae 642]
          Length = 511

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|298484609|ref|ZP_07002714.1| Chromosomal replication initiator protein dnaA [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160866|gb|EFI01882.1| Chromosomal replication initiator protein dnaA [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 511

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|71737409|ref|YP_272316.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|123734066|sp|Q48QK0|DNAA_PSE14 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|71557962|gb|AAZ37173.1| chromosomal replication initiator protein DnaA [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320321688|gb|EFW77787.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 511

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|257485599|ref|ZP_05639640.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 511

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|313817643|gb|EFS55357.1| replication initiator protein DnaA [Propionibacterium acnes
           HL046PA2]
 gi|314961663|gb|EFT05764.1| replication initiator protein DnaA [Propionibacterium acnes
           HL002PA2]
 gi|315081497|gb|EFT53473.1| replication initiator protein DnaA [Propionibacterium acnes
           HL078PA1]
 gi|315083080|gb|EFT55056.1| replication initiator protein DnaA [Propionibacterium acnes
           HL027PA2]
 gi|315086613|gb|EFT58589.1| replication initiator protein DnaA [Propionibacterium acnes
           HL002PA3]
          Length = 428

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 92  NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 151

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 152 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 211

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 212 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 271

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 272 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 325


>gi|288573679|ref|ZP_06392036.1| chromosomal replication initiator protein DnaA [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569420|gb|EFC90977.1| chromosomal replication initiator protein DnaA [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 440

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 26/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                    +V  +   A      +   P      + + G  G GK+ L +     +   
Sbjct: 107 NPNYLFSSFVVGKSNRLAHAASLAVAESPGAAYNPLFIWGGVGLGKTHLMHAIGHHALQN 166

Query: 91  -------------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128
                              T   N   +       T   +L++DI  L   +    + FH
Sbjct: 167 DRNLKVGYVSSEKFTNELITSIKNNRTAEFRARYRTMDLLLIDDIQFLAGKESTQEEFFH 226

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS+H     +++++   P         L SR +   V  I  PD +    ++ K    
Sbjct: 227 TFNSLHDGKKQIVLSSDRPPKDIKSIEDRLVSRFEWGLVTDIQSPDYETRIAILTKKAEF 286

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           R   + + +  Y+ Q +  ++   E  ++++   A      +T    +E LK+  +
Sbjct: 287 RNYPMPEDVINYLAQNVPSNIRELEGALNRVIACAELNSEPVTVENTSEWLKDIVR 342


>gi|86142844|ref|ZP_01061283.1| chromosomal replication initiation protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85830876|gb|EAQ49334.1| chromosomal replication initiation protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 476

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 37/260 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          + ++ L   +   A     +  + P      
Sbjct: 126 FVIPGIRNL----EIESQL------NPNYNFENFLEGDSNRLARSAGMAVANKPGGTSFN 175

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ LA+                   ++K       ++ K+  +  I   
Sbjct: 176 PLLIFGGVGLGKTHLAHAIGVQIKDRYPDKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 235

Query: 109 KPV---LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + +   +++DI LL          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 236 QVIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVVLTSDKAPVDMQDIEQRLLSRF 295

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  P  +    +I        + + + +  ++   ++ ++   E  +  +   
Sbjct: 296 KWGLSAELQSPGFETRVSIIKNKLYQDGVEMPEDIVEFLANNIKTNIRELEGAIISLIAH 355

Query: 223 ALSRGMGITRSLAAEVLKET 242
           +      I   LA +++   
Sbjct: 356 SSFNRKEINLELAKKIVDNY 375


>gi|152989598|ref|YP_001345397.1| chromosomal replication initiation protein [Pseudomonas aeruginosa
           PA7]
 gi|150964756|gb|ABR86781.1| chromosomal replication initiator protein DnaA [Pseudomonas
           aeruginosa PA7]
          Length = 512

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 181 FTFENFVEGKSNQLARAA--AWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 238

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 239 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 296

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 297 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAE 356

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +I +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 357 QAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDL 411


>gi|124007462|ref|ZP_01692168.1| chromosomal replication initiator protein DnaA [Microscilla marina
           ATCC 23134]
 gi|123987118|gb|EAY26867.1| chromosomal replication initiator protein DnaA [Microscilla marina
           ATCC 23134]
          Length = 493

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 81/244 (33%), Gaps = 31/244 (12%)

Query: 32  FPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIW--- 84
           F      + +  +       A    + +           ++L G  G GK+ L       
Sbjct: 152 FQINPRYTFESFIEGDCNRLARSAGLAVAQKPGVTSFNPLMLYGGVGLGKTHLVQAIGNY 211

Query: 85  -SDKSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFNDTQ--- 125
             +  +       +    +  I+                   + ++D+  L   +     
Sbjct: 212 VQENGQKKILYVSSDRFTNQFIEALKNNDLQSFTDYYMQADVLAIDDVQFLSGKEKTQEI 271

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            F+I N +HQ    ++MT+   P         L SR K      +  PD +    +I K+
Sbjct: 272 FFNIFNHLHQSGKQIIMTSDCPPKELKGLQERLLSRFKWGLTADLKQPDLETRIAIIHKI 331

Query: 186 FA---DRQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKE 241
                ++ I I  K+  Y+   ++ ++   E  +V  +   +L     IT  LA + +++
Sbjct: 332 LQSEDNKNIEISGKVVEYLAHSIDSNVRELEGAIVSIIAKASL-NQSPITMELAKQTVQQ 390

Query: 242 TQQC 245
             Q 
Sbjct: 391 IVQP 394


>gi|224536057|ref|ZP_03676596.1| hypothetical protein BACCELL_00921 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522316|gb|EEF91421.1| hypothetical protein BACCELL_00921 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 462

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 29/260 (11%)

Query: 16  QKNDQPKNKEEQLFFSF-PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VIL 69
           QK    +   +       P      + +  +   + + +  + ++    P++     +  
Sbjct: 104 QKKVIGREIPQAPIADLDPHLNPEYNFETFIEGYSNKLSRSVAEAVAQNPAKTIFNPLFF 163

Query: 70  VGPSGSGKSCLANIWSDK-------SRSTRFSNIA---KSLDSILIDTRKPVL------- 112
            G SG GK+ LAN    K        R    S      +  DS+  +T    +       
Sbjct: 164 YGASGVGKTHLANAIGTKIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQSID 223

Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
                 +++   +       FHI N +HQ    L++T+   PV        L +R K   
Sbjct: 224 ILIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGM 283

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           V ++  P  +  + ++        +    ++  YI + +  S+   E +V  +   +   
Sbjct: 284 VAELERPTVELRKNILRNKIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIY 343

Query: 227 GMGITRSLAAEVLKETQQCD 246
              I   L   ++++  + +
Sbjct: 344 NKEIDLELTQRIVRKVVKSE 363


>gi|301384271|ref|ZP_07232689.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302063879|ref|ZP_07255420.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302131962|ref|ZP_07257952.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 511

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|28867244|ref|NP_789863.1| chromosomal replication initiator protein DnaA [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|38257476|sp|Q88BK3|DNAA_PSESM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|28850478|gb|AAO53558.1| chromosomal replication initiator protein DnaA [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 511

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|172056046|ref|YP_001812506.1| chromosomal replication initiator protein DnaA [Exiguobacterium
           sibiricum 255-15]
 gi|226735812|sp|B1YGB2|DNAA_EXIS2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|171988567|gb|ACB59489.1| chromosomal replication initiator protein DnaA [Exiguobacterium
           sibiricum 255-15]
          Length = 464

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 90/263 (34%), Gaps = 28/263 (10%)

Query: 11  FVPDKQKNDQPKNKEEQLFF-SFP-RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
             P K K  +     ++L            + D  ++ S    A     +    P++   
Sbjct: 102 VAPAKTKAQKTPKSSDELVMSELGQLNEKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYN 161

Query: 67  -VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPV------------ 111
            + + G  G GK+ L +      + +         S +    D    +            
Sbjct: 162 PLFIYGGVGLGKTHLMHAIGQYVQDQKLGTKIAYVSSEQFTNDFINSIRDNKTVQFRNKY 221

Query: 112 ------LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                 L++DI  L   +    + FH  N++H     +++++   P         L SR 
Sbjct: 222 RNIDVLLIDDIQFLAGKEQTQEEFFHTFNALHNDQKQIIISSDRPPKEIPTLEDRLRSRF 281

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   +  I+ PD +    ++ K     Q+ +  ++  YI  +++ ++   E  + ++   
Sbjct: 282 EWGLITDITPPDLETRIAILRKKANAEQLDVSNEVMLYIASQIDTNIRELEGALTRVIAY 341

Query: 223 ALSRGMGITRSLAAEVLKETQQC 245
           A   G  I  ++AAE L      
Sbjct: 342 ANLVGRTIDPNVAAEALHNIMPA 364


>gi|26986755|ref|NP_742180.1| chromosomal replication initiation protein [Pseudomonas putida
           KT2440]
 gi|60392185|sp|P0A116|DNAA_PSEPK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|60392186|sp|P0A117|DNAA_PSEPU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|24981346|gb|AAN65644.1|AE016191_1 chromosomal replication initiator protein DnaA [Pseudomonas putida
           KT2440]
 gi|581460|emb|CAA32893.1| unnamed protein product [Pseudomonas putida]
          Length = 506

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + D  +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 175 FTFDTFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 232

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 233 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 290

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 291 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 350

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 351 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 405


>gi|314980257|gb|EFT24351.1| replication initiator protein DnaA [Propionibacterium acnes
           HL072PA2]
          Length = 500

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 397


>gi|283956179|ref|ZP_06373664.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792333|gb|EFC31117.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 440

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +             + + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAVAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|213968441|ref|ZP_03396584.1| chromosomal replication initiator protein DnaA [Pseudomonas
           syringae pv. tomato T1]
 gi|213926729|gb|EEB60281.1| chromosomal replication initiator protein DnaA [Pseudomonas
           syringae pv. tomato T1]
          Length = 509

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 151 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 208

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 209 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 266

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 267 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 326

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 327 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 386

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 387 AHSHFMGRDITIELIRESLKDL 408


>gi|309791068|ref|ZP_07685604.1| chromosomal replication initiator protein DnaA [Oscillochloris
           trichoides DG6]
 gi|308226923|gb|EFO80615.1| chromosomal replication initiator protein DnaA [Oscillochloris
           trichoides DG6]
          Length = 462

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 88/251 (35%), Gaps = 31/251 (12%)

Query: 23  NKEEQLFFSFPRC-----LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSG 74
           ++  QL  S            +    +V S+   A     +    P +    + L G  G
Sbjct: 107 DRAVQLDLSSAMRTGMLNPKYTFSRFIVGSSNRLAHAACLAVADNPGQHYNPLFLYGGVG 166

Query: 75  SGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLE 114
            GK+ L +                   S+K  +   + I +          + +   L++
Sbjct: 167 LGKTHLLHAIGNYVLDRDPEINVLYVSSEKFTNDMINAIRRQQTEEFRMRYRNIDVLLVD 226

Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DI  +   +    + FH  N++H     +++++   P +       L SR +   +  I 
Sbjct: 227 DIQFIAGKEGTQEEFFHTFNTLHSAAKHIVISSDKPPKAIPTLEERLRSRFEWGLIADIQ 286

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            PD +    ++        + I  ++  ++  +++ ++   E  ++++   A   G+ I 
Sbjct: 287 PPDLETRTAILRTKGEQMNVEIPNEVIDFLAHKVQSNIRELEGSLNRVAAFAEQHGLPIN 346

Query: 232 RSLAAEVLKET 242
             +A   L + 
Sbjct: 347 VEVATSALADL 357


>gi|89092264|ref|ZP_01165218.1| chromosomal replication initiator protein, DnaA [Oceanospirillum
           sp. MED92]
 gi|89083352|gb|EAR62570.1| chromosomal replication initiator protein, DnaA [Oceanospirillum
           sp. MED92]
          Length = 543

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 82/236 (34%), Gaps = 30/236 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW------- 84
               + +  +   + + A+         P      + + G  G GK+ L +         
Sbjct: 209 NQSFTFESFVQGKSNQLALAAARQVGDNPGVSYNPLFIYGGVGLGKTHLMHAVGNEMLKR 268

Query: 85  ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126
                          +D  ++ + + I          +   +L++DI      +    + 
Sbjct: 269 NPNAKIVYLHSERFVADMVKALQLNAINDFKR--YYRSVDALLIDDIQFFAGKERSQEEF 326

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++ +    +++T+  +P         L SR      V I  P+ +    +++K  
Sbjct: 327 FHTFNALLEGGQQMILTSDRYPKEINGVEERLKSRFGWGLTVAIEPPELETRVAILMKKA 386

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            + ++ +    A ++ Q++  ++   E  + ++   A   G  IT     E LK+ 
Sbjct: 387 DEARVRLPDDAAFFLAQKIRSNVRELEGALKRVIANAHFTGSAITTPFIKESLKDL 442


>gi|229587579|ref|YP_002869698.1| chromosomal replication initiation protein [Pseudomonas fluorescens
           SBW25]
 gi|259645257|sp|B0B0A5|DNAA_PSEFS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|164564809|emb|CAJ57270.1| chromosomal replication initiator protein DnaA [Pseudomonas
           fluorescens SBW25]
          Length = 501

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 170 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 227

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 228 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 285

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 286 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 345

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 346 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 400


>gi|86154004|ref|ZP_01072206.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842542|gb|EAQ59755.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 440

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +             + + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|328675183|gb|AEB27858.1| Chromosomal replication initiator protein DnaA [Francisella cf.
           novicida 3523]
          Length = 491

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNYKDPTIEVAQACL 387

Query: 240 KET 242
           ++ 
Sbjct: 388 RDV 390


>gi|313496418|gb|ADR57784.1| DnaA [Pseudomonas putida BIRD-1]
          Length = 504

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + D  +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 173 FTFDTFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 230

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 231 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 288

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 289 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 348

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 349 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 403


>gi|331011887|gb|EGH91943.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 511

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|327457414|gb|EGF04069.1| replication initiator protein DnaA [Propionibacterium acnes
           HL092PA1]
          Length = 500

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 397


>gi|256003888|ref|ZP_05428875.1| chromosomal replication initiator protein DnaA [Clostridium
           thermocellum DSM 2360]
 gi|255992226|gb|EEU02321.1| chromosomal replication initiator protein DnaA [Clostridium
           thermocellum DSM 2360]
 gi|316939067|gb|ADU73101.1| chromosomal replication initiator protein DnaA [Clostridium
           thermocellum DSM 1313]
          Length = 443

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 91/234 (38%), Gaps = 29/234 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A     +    P +    + + G  G GK+ L +         
Sbjct: 108 NPKYTFDTFVIGNSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLMHAIGHYILEQ 167

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF---NDTQLFH 128
                     S+K  +   + I  + +       + +   L++DI  +      + + FH
Sbjct: 168 NSSQRVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQFIAGKERTEEEFFH 227

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++++ +  +++++   P    + L D L SR +   +  +  PD +    ++ K   
Sbjct: 228 TFNALYEANKQIILSSDKPPKE--ISLEDRLRSRFEWGLIADMQAPDLETRIAILRKKAQ 285

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              + +  ++  +I  ++  ++   E  ++++   +      IT  LA+E LK+
Sbjct: 286 LENLTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEITVELASEALKD 339


>gi|281418689|ref|ZP_06249708.1| chromosomal replication initiator protein DnaA [Clostridium
           thermocellum JW20]
 gi|281407773|gb|EFB38032.1| chromosomal replication initiator protein DnaA [Clostridium
           thermocellum JW20]
          Length = 443

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 91/234 (38%), Gaps = 29/234 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A     +    P +    + + G  G GK+ L +         
Sbjct: 108 NPKYTFDTFVIGNSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLMHAIGHYILEQ 167

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF---NDTQLFH 128
                     S+K  +   + I  + +       + +   L++DI  +      + + FH
Sbjct: 168 NSSQRVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQFIAGKERTEEEFFH 227

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++++ +  +++++   P    + L D L SR +   +  +  PD +    ++ K   
Sbjct: 228 TFNALYEANKQIILSSDKPPKE--ISLEDRLRSRFEWGLIADMQAPDLETRIAILRKKAQ 285

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              + +  ++  +I  ++  ++   E  ++++   +      IT  LA+E LK+
Sbjct: 286 LENLTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEITVELASEALKD 339


>gi|125974856|ref|YP_001038766.1| chromosomal replication initiation protein [Clostridium
           thermocellum ATCC 27405]
 gi|166201880|sp|A3DHZ4|DNAA_CLOTH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|125715081|gb|ABN53573.1| chromosomal replication initiator protein DnaA [Clostridium
           thermocellum ATCC 27405]
          Length = 443

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 91/234 (38%), Gaps = 29/234 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + D  ++ ++   A     +    P +    + + G  G GK+ L +         
Sbjct: 108 NPKYTFDTFVIGNSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLMHAIGHYILEQ 167

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF---NDTQLFH 128
                     S+K  +   + I  + +       + +   L++DI  +      + + FH
Sbjct: 168 NSSQKVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQFIAGKERTEEEFFH 227

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++++ +  +++++   P    + L D L SR +   +  +  PD +    ++ K   
Sbjct: 228 TFNALYEANKQIILSSDKPPKE--ISLEDRLRSRFEWGLIADMQAPDLETRIAILRKKAQ 285

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              + +  ++  +I  ++  ++   E  ++++   +      IT  LA+E LK+
Sbjct: 286 LENLTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEITVELASEALKD 339


>gi|148545260|ref|YP_001265362.1| chromosomal replication initiation protein [Pseudomonas putida F1]
 gi|166214693|sp|A5VWB8|DNAA_PSEP1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|148509318|gb|ABQ76178.1| chromosomal replication initiator protein DnaA [Pseudomonas putida
           F1]
          Length = 505

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + D  +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 174 FTFDTFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 231

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 232 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 289

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 290 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 349

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 350 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 404


>gi|299141383|ref|ZP_07034520.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella
           oris C735]
 gi|298577343|gb|EFI49212.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella
           oris C735]
          Length = 468

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 91/263 (34%), Gaps = 37/263 (14%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS-RVVI 68
           P     D+  + + QL         ++  + +  ++ +    L   I   PS P    + 
Sbjct: 115 PSPMDVDKAADIDTQL------DPHLNFKNYVEGTSNKLVRSLGLSIAEHPSQPQFNPMF 168

Query: 69  LVGPSGSGKSCL---------------------ANIWSDK-SRSTRFSNIAKSLDSILID 106
           + GPSG GK+ L                     A ++  +   +   S+I   +      
Sbjct: 169 IYGPSGCGKTHLINAIGLRCKQLYPEKRVLYISARLFQSQFVDANLHSSINDFIR--FYQ 226

Query: 107 TRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           T   ++++DI             FHI N + +    +L+ +   PV        L +R  
Sbjct: 227 TIDMLIVDDIQEWVNATKTQDTFFHIFNHLFRNGKRILLVSDRPPVDLKGMNERLLTRFS 286

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + ++  P+ +    ++        + I  ++  +I      S+   E +V+ +   +
Sbjct: 287 CGLIAELEKPNVELCTDILKAKIRRDGLHIPDEVIRFIASTANGSVRDLEGVVNSLLAYS 346

Query: 224 LSRGMGITRSLAAEVLKETQQCD 246
           +     +   LA  V+K   + D
Sbjct: 347 VVYNSNVDMRLAERVIKRAVKVD 369


>gi|269791620|ref|YP_003316524.1| chromosomal replication initiator protein DnaA [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099255|gb|ACZ18242.1| chromosomal replication initiator protein DnaA [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 447

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 89/255 (34%), Gaps = 27/255 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVIL 69
           P++QK  +      Q             D+ +V  +   A     +    P      + +
Sbjct: 93  PNEQKRAEAAAMPLQ-SQRGGLNPNYVFDNFVVGKSNRLAHAASLAAAESPGVAYNPLFI 151

Query: 70  VGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDTR---------------K 109
            G  G GK+ L +         +  +      ++   + LI                   
Sbjct: 152 WGGVGLGKTHLMHAIGHYVCDNQPGAKVVYVSSEKFTNELISAIQNNRTQDFKAKYRSVD 211

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI  L   +    + FH  NS+H     +++++   P         L SR +   
Sbjct: 212 VLLIDDIQFLADKESTQEEFFHTFNSLHDAKKQVVISSDRPPKDIQRVEERLVSRFEWGL 271

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           V  I  PD +    ++ K    R   + + +  ++ Q +  ++   E  ++++   +   
Sbjct: 272 VTDIQPPDLETRVAILQKKAEMRGYEVPEDVIFFLAQNIPSNIRELEGALNRVVACSELN 331

Query: 227 GMGITRSLAAEVLKE 241
           G  I+   AAE LK+
Sbjct: 332 GEVISVENAAEWLKD 346


>gi|313904725|ref|ZP_07838099.1| chromosomal replication initiator protein DnaA [Eubacterium
           cellulosolvens 6]
 gi|313470518|gb|EFR65846.1| chromosomal replication initiator protein DnaA [Eubacterium
           cellulosolvens 6]
          Length = 446

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 87/241 (36%), Gaps = 29/241 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  +V S  + A     +    P ++   + L G  G GK+ L N     I  +
Sbjct: 106 NPRYTFDTFVVGSNNKFAHAASLAVAESPGKIYNPLFLYGGVGLGKTHLMNSIAHFILEN 165

Query: 87  KSRSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQ 125
                     ++   + +ID  +                   +L++DI  +   +    +
Sbjct: 166 HPGIRIVYVTSEEFTNEVIDAIRNGSNTAINKFREKYRNIDVLLIDDIQFIIGKESTQEE 225

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++H     +++++   P    +    + SR +   +  I +PD +    ++ K 
Sbjct: 226 FFHTFNALHGAGKQIIISSDRPPKDMDILEDRIRSRFEWGLMADIQMPDYETRMAILRKK 285

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                  +D  +  YI   ++ ++   E  ++K+   +      I   LA + L++    
Sbjct: 286 QEIDGTSVDDDVLEYIASNVKSNIRELEGSLNKVIAFSNLEQKEIDIELAQKALRDIISP 345

Query: 246 D 246
           D
Sbjct: 346 D 346


>gi|320161310|ref|YP_004174534.1| chromosomal replication initiator protein DnaA [Anaerolinea
           thermophila UNI-1]
 gi|319995163|dbj|BAJ63934.1| chromosomal replication initiator protein DnaA [Anaerolinea
           thermophila UNI-1]
          Length = 447

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 92/256 (35%), Gaps = 27/256 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISR---DDLLVHSAIEQAVRLIDSWPSWPSRV---V 67
           D  + + P+   +Q F         SR   D+ +V ++   A     +    P++    +
Sbjct: 86  DMPEEEVPEESHQQAFLRSGTSTINSRYTFDNFIVGASNRMAHAACMAVAESPAKAYNPL 145

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV---------------- 111
            L G  G GK+ L +   + ++S     +  S +    D    +                
Sbjct: 146 FLYGGVGLGKTHLLHAIGNAAQSRGLQVLYVSSEEFTNDLINAIRSHTTQAFRERYRNMD 205

Query: 112 --LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
             L++DI  +   +    + FH  N++H  D  +++++   P +       L SR +   
Sbjct: 206 VLLIDDIQFIAGKESTQEEFFHTFNTLHGQDKQIVISSDRSPKALVTLEERLRSRFEWGL 265

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            V I  PD +    ++          +   +   I + ++ ++   E  + ++   +   
Sbjct: 266 TVDIQPPDLETRIAILRSKAERNNKEVPYPILESIARLVQSNIRELEGALTRVLAFSDLS 325

Query: 227 GMGITRSLAAEVLKET 242
           GM ++  L    L + 
Sbjct: 326 GMPLSPQLVHTALADM 341


>gi|159035675|ref|YP_001534928.1| chromosomal replication initiator protein DnaA [Salinispora
           arenicola CNS-205]
 gi|157914510|gb|ABV95937.1| chromosomal replication initiator protein DnaA [Salinispora
           arenicola CNS-205]
          Length = 591

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
                 +  ++ S+   A      +   P+     + + G SG GK+ L +         
Sbjct: 254 NPKYMFETFVIGSSNRFAHAASVAVAESPAKAYNPLFIYGSSGLGKTHLLHAIGHYATTL 313

Query: 87  -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
             + S R+ +  +  +  +   R                +L++DI  L+  +    + FH
Sbjct: 314 GNAHSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFH 373

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++T+   P         L +R +   +  I  PD +    ++ K  A 
Sbjct: 374 TFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQ 433

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++F    +  +I  R+  S+   E  + ++   A      +  SLA EVL++
Sbjct: 434 ERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRD 486


>gi|313765026|gb|EFS36390.1| replication initiator protein DnaA [Propionibacterium acnes
           HL013PA1]
 gi|314930919|gb|EFS94750.1| replication initiator protein DnaA [Propionibacterium acnes
           HL067PA1]
 gi|315099342|gb|EFT71318.1| replication initiator protein DnaA [Propionibacterium acnes
           HL059PA2]
          Length = 500

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 397


>gi|50841497|ref|YP_054724.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes KPA171202]
 gi|289424325|ref|ZP_06426108.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes SK187]
 gi|289427361|ref|ZP_06429074.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes J165]
 gi|295129530|ref|YP_003580193.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes SK137]
 gi|61212561|sp|Q6ABL5|DNAA_PROAC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|50839099|gb|AAT81766.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes KPA171202]
 gi|289155022|gb|EFD03704.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes SK187]
 gi|289159291|gb|EFD07482.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes J165]
 gi|291377061|gb|ADE00916.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes SK137]
 gi|313771066|gb|EFS37032.1| replication initiator protein DnaA [Propionibacterium acnes
           HL074PA1]
 gi|313792568|gb|EFS40654.1| replication initiator protein DnaA [Propionibacterium acnes
           HL110PA1]
 gi|313803569|gb|EFS44751.1| replication initiator protein DnaA [Propionibacterium acnes
           HL110PA2]
 gi|313814221|gb|EFS51935.1| replication initiator protein DnaA [Propionibacterium acnes
           HL025PA1]
 gi|313821532|gb|EFS59246.1| replication initiator protein DnaA [Propionibacterium acnes
           HL036PA1]
 gi|314963873|gb|EFT07973.1| replication initiator protein DnaA [Propionibacterium acnes
           HL082PA1]
 gi|314969083|gb|EFT13181.1| replication initiator protein DnaA [Propionibacterium acnes
           HL037PA1]
 gi|314985203|gb|EFT29295.1| replication initiator protein DnaA [Propionibacterium acnes
           HL005PA1]
 gi|314987112|gb|EFT31204.1| replication initiator protein DnaA [Propionibacterium acnes
           HL005PA2]
 gi|315097162|gb|EFT69138.1| replication initiator protein DnaA [Propionibacterium acnes
           HL038PA1]
 gi|315107498|gb|EFT79474.1| replication initiator protein DnaA [Propionibacterium acnes
           HL030PA1]
 gi|315109866|gb|EFT81842.1| replication initiator protein DnaA [Propionibacterium acnes
           HL030PA2]
 gi|327444469|gb|EGE91123.1| replication initiator protein DnaA [Propionibacterium acnes
           HL013PA2]
 gi|327446723|gb|EGE93377.1| replication initiator protein DnaA [Propionibacterium acnes
           HL043PA2]
 gi|328757976|gb|EGF71592.1| replication initiator protein DnaA [Propionibacterium acnes
           HL020PA1]
 gi|332674399|gb|AEE71215.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes 266]
          Length = 500

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 397


>gi|330500915|ref|YP_004377784.1| chromosomal replication initiation protein [Pseudomonas mendocina
           NK-01]
 gi|328915201|gb|AEB56032.1| chromosomal replication initiation protein [Pseudomonas mendocina
           NK-01]
          Length = 494

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + D+ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 163 FTFDNFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLAKN 220

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 221 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAKKERSQEEFF 278

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 279 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 338

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 339 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 393


>gi|188995956|ref|YP_001930207.1| chromosomal replication initiator protein DnaA
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931023|gb|ACD65653.1| chromosomal replication initiator protein DnaA
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 459

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 90/237 (37%), Gaps = 26/237 (10%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----I 83
                  + D+L+V +  + A +   +      ++   + + G  G GK+ L +     +
Sbjct: 120 LSLNPKYTFDNLIVGNNNKVAFQACLAVTENLGKIYNPLFIYGDVGLGKTHLLHGTAYHV 179

Query: 84  WSDKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFNDT---Q 125
            +  S +      A +  S L                     +L++DI  L   +    +
Sbjct: 180 LAKSSSAKIIYTTADTFASELFSYLEKGMILEFRKKYREVDLLLIDDIQFLVGKERTQIE 239

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            +HI N ++     +++++   P         L SR  +  +V+I+ PD +    + +K 
Sbjct: 240 FYHIFNVLYSLGKQIILSSDQPPSKLNGIEKRLISRFSSGLIVEITKPDLETKINITLKK 299

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +  +   + +  +I + +  S+   E  + ++   +   G  IT  +A  VLK+ 
Sbjct: 300 MKELNVEFSRDVVLFIAKTVNTSVRELEGSIKRLKAYSEIMGRPITLDVARTVLKDV 356


>gi|254483197|ref|ZP_05096430.1| chromosomal replication initiator protein DnaA [marine gamma
           proteobacterium HTCC2148]
 gi|214036568|gb|EEB77242.1| chromosomal replication initiator protein DnaA [marine gamma
           proteobacterium HTCC2148]
          Length = 475

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 83/235 (35%), Gaps = 30/235 (12%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-------- 84
              + D+ +   + + A+         P      + L G  G GK+ L +          
Sbjct: 154 ETYTFDNFVEGKSNQLALAAARQVAENPGDSYNPLFLYGGVGLGKTHLMHAVGNALRLNK 213

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQLF 127
                         +D  ++ + + I+         T   +L++DI      D +  + F
Sbjct: 214 PNAKVVYLHSERFVADMVKALQLNAISDFKR--YYRTVDALLIDDIQFFAKKDRSQEEFF 271

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T   +P         L SR      V +  P+ +    +++K   
Sbjct: 272 HTFNALLEGGQQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAT 331

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +I +    A +I QR+  ++   E  + ++   A   G  I   L  E LK+ 
Sbjct: 332 QARINLPPDAAFFIAQRIRSNVRELEGALKRVIASAHFTGKDIDIDLIKESLKDL 386


>gi|81427617|ref|YP_394614.1| chromosomal replication initiation protein A [Lactobacillus sakei
           subsp. sakei 23K]
 gi|123755887|sp|Q38ZS4|DNAA_LACSS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78609256|emb|CAI54303.1| Chromosomal replication initiation protein A [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 448

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 89/267 (33%), Gaps = 36/267 (13%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISR----------DDLLVHSAIEQAVRL---I 56
           F +P +  N  P   EE+   +        R          D  +     + A      +
Sbjct: 78  FVLPGESDNLTPLEPEEEHVLTKAETPTFLRETHLNSKYTFDTFVTGKGNQMAHAAALVV 137

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDK----------------SRSTRFSNIAKSL 100
              P      + L G  G GK+ L      +                + +  F N  ++ 
Sbjct: 138 SEEPGVLYNPLFLYGGVGLGKTHLMQAIGHQLLESKPETNVKYVTSEAFANDFINSIQTK 197

Query: 101 DSILIDTR----KPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
           +             +L++DI           + FH  N ++     +++T+   P     
Sbjct: 198 NQEKFRQEYRNVDLLLVDDIQFFADKEGTQEEFFHTFNDLYNDKKQIVLTSDRLPNEIPK 257

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR K    V I+ PD +    ++        + I +   +YI  +++ ++   E
Sbjct: 258 LQERLVSRFKWGLPVDITPPDLETRIAILRNKADAEHLEIPEDTLSYIAGQIDSNVRELE 317

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLK 240
             + ++   A  +   IT SLAA+ LK
Sbjct: 318 GALVRVQAYATMQNAEITTSLAADALK 344


>gi|194332854|ref|YP_002014714.1| chromosomal replication initiation protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194310672|gb|ACF45067.1| chromosomal replication initiator protein DnaA [Prosthecochloris
           aestuarii DSM 271]
          Length = 492

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 88/254 (34%), Gaps = 29/254 (11%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVG 71
           Q  D+ + ++ ++ F        +   L+       A     S    P       +++ G
Sbjct: 135 QSADRERFEKNRIKFESHLNPKYTFSSLIRGDCNSLAFAASKSVAQNPGQNAFNPLVIYG 194

Query: 72  PSGSGKSCLANIWSDKSRSTRFSN--IAKSLDSILIDTRKPV------------------ 111
             G GK+ +     ++ R    S   +  S +   ID    +                  
Sbjct: 195 GVGLGKTHMMQAIGNQVRENCISEYVLYVSSEKFAIDFVNAIQNGNIQEFSSFYRKIDVL 254

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           +++DI      +    ++FHI N++HQ +  +++++             L SR      V
Sbjct: 255 IIDDIQFFAGKEKTQEEIFHIFNTLHQSNKQIILSSDRPIKEIKGIEDRLISRFNWGLSV 314

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRG 227
            +  PD +  + +I        + +D  +  +I   + +++   E  +V  +   +L   
Sbjct: 315 DLQPPDYETRKAIIQSKLEQNGVNLDSTIVDFIATNVTQNVRELEGCIVKLLAAHSLFNQ 374

Query: 228 MGITRSLAAEVLKE 241
             I  +     LK+
Sbjct: 375 -EIDLAFTKSTLKD 387


>gi|167560990|ref|ZP_02353906.1| chromosomal replication initiation protein [Burkholderia
           oklahomensis EO147]
          Length = 387

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 53  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 112

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 113 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 172

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 173 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 232

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 233 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 286


>gi|148654189|ref|YP_001274394.1| chromosomal replication initiation protein [Roseiflexus sp. RS-1]
 gi|166215156|sp|A5UP91|DNAA_ROSS1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|148566299|gb|ABQ88444.1| chromosomal replication initiator protein DnaA [Roseiflexus sp.
           RS-1]
          Length = 481

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 90/253 (35%), Gaps = 31/253 (12%)

Query: 21  PKNKEEQLFFSFPRC-----LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72
            +   +QL               + D  ++  +   A     +    P++    + L G 
Sbjct: 124 ERTPPQQLELHRAVRSSMLNPRYTFDRFIIGPSNRLANAACMAVAEHPAQAYNPLFLYGG 183

Query: 73  SGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTR-------------KPVL 112
            G GK+ L +   +       +      S+   + D I    R               +L
Sbjct: 184 VGLGKTHLLHAIGNFVLDRDPEVNVLYVSSETFTNDLINSIRRQQTEEFRIRYRNIDILL 243

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  +   +    + FH  N++H     +++++   P +       L SR +   +V 
Sbjct: 244 IDDIQFIAGKEQTQEEFFHTFNTLHSAGKQIVISSDRSPKAILTLEERLRSRFEWGLIVD 303

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           + +PD +    ++        + + + +  ++ QR++  +   E  ++++   A    + 
Sbjct: 304 VQMPDLETRTAILRAKAEQSPVPVPQPVIDFLAQRIQSHIRELEGCLNRVTAFAQMYNVP 363

Query: 230 ITRSLAAEVLKET 242
           +T  +A   L E 
Sbjct: 364 VTIEVATAALSEL 376


>gi|296131551|ref|YP_003638798.1| chromosomal replication initiator protein DnaA [Thermincola sp. JR]
 gi|296030129|gb|ADG80897.1| chromosomal replication initiator protein DnaA [Thermincola potens
           JR]
          Length = 451

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 90/249 (36%), Gaps = 26/249 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGS 75
           D  KN  E L  S       + D  +V ++   A     +           + + G  G 
Sbjct: 99  DIKKNYNEDLSISTHLNPKYTFDTFVVGNSNRFAHAAALAVAEAPAKAYNPLFIYGGVGL 158

Query: 76  GKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--------------KPVLLED 115
           GK+ L           + S    + +  K  + ++   R                +L++D
Sbjct: 159 GKTHLMQAIGHYILEQEYSLRVVYVSSEKFTNELINSIRDDKTVDFRNKYRNMDILLIDD 218

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I  L   +    + FH  N++++ +  +++++   P         L SR +   +  I  
Sbjct: 219 IQFLAGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQP 278

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           PD +    ++ K      + +   +  YI  R++ ++   E  + ++   +      IT 
Sbjct: 279 PDLETRIAILRKKAQLENLMVPNDVMLYIANRIQSNIRELEGALIRVMAYSSLTNSEITT 338

Query: 233 SLAAEVLKE 241
            LAAE LK+
Sbjct: 339 DLAAEALKD 347


>gi|314926333|gb|EFS90164.1| replication initiator protein DnaA [Propionibacterium acnes
           HL036PA3]
          Length = 500

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 397


>gi|167568254|ref|ZP_02361128.1| chromosomal replication initiation protein [Burkholderia
           oklahomensis C6786]
          Length = 390

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 56  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 115

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 116 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 175

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 176 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 235

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 236 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 289


>gi|328956383|ref|YP_004373769.1| chromosomal replication initiation protein [Carnobacterium sp.
           17-4]
 gi|328672707|gb|AEB28753.1| chromosomal replication initiation protein [Carnobacterium sp.
           17-4]
          Length = 445

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
               + D  ++    + A          P      +   G  G GK+ L +    +    
Sbjct: 111 NTKYTFDTFVIGKGNQMAHAAALVVAEEPGTIYNPLFFYGGVGLGKTHLMHAIGHQMLLL 170

Query: 88  ---SRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLD---FNDTQLFH 128
              +R    S+   + D I                +   +L++DI           + FH
Sbjct: 171 NPDARVKYVSSETFANDFINSIQNKTQEKFRNEYRSVDLLLVDDIQFFADKEGTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 231 TFNALYDDRKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRIAILRKKANA 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A      IT SLAA+ LK  
Sbjct: 291 ERLEIPGDTLSYIAGQIDSNIRELEGALVRVQAYAAIESRDITTSLAADALKSM 344


>gi|302877246|ref|YP_003845810.1| chromosomal replication initiator protein DnaA [Gallionella
           capsiferriformans ES-2]
 gi|302580035|gb|ADL54046.1| chromosomal replication initiator protein DnaA [Gallionella
           capsiferriformans ES-2]
          Length = 451

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 82/233 (35%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ ++  A + A          P      + + G  G GK+ L     ++    
Sbjct: 117 NQSLTFDNFVIGKANQLAFAAATQVAELPGVSYNPLFIYGGVGLGKTHLTQAIGNQILIN 176

Query: 88  -SRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDF---NDTQLFH 128
             ++      A+   + ++                    +L++DI           + F+
Sbjct: 177 RPQAKVCYMHAERYVADVVRAYQTNKFEEFKQYYHSLDVLLIDDIQFFAGKNKTQEEFFY 236

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++      +++T+ TFP         L SR      + I  P+ +    +++K  A 
Sbjct: 237 AFNTLVDSHKQVILTSDTFPKELTGLESRLVSRFGWGLTIAIEPPELEMRVAILLKKAAI 296

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               +D  +A +I + +  ++   E  + +++         I+   A E LK+
Sbjct: 297 SGYVLDDAVAFFIAKHVNSNVRELEGALKRVEAYTKFHKRIISVDTAKEALKD 349


>gi|291457888|ref|ZP_06597278.1| DNA replication initiator protein, ATPase [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291419432|gb|EFE93151.1| DNA replication initiator protein, ATPase [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 454

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 88/247 (35%), Gaps = 36/247 (14%)

Query: 31  SFP-------RCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCL 80
            FP            + D  +V S+   A      +   P      + + G +G GK+ L
Sbjct: 105 DFPQILKKANLNPRYTFDSFVVGSSNNLAHAASLAVAESPGEIYNPLYIYGGAGLGKTHL 164

Query: 81  ANIWSD-------KSRSTRF----------------SNIAKSLDSILIDTRKPVLLEDID 117
               +        +S                     +N++ +           +L++DI 
Sbjct: 165 MQSIAHFILKSNPQSNIRYVTSETFINEFVDSIRNKNNLSPAEFRKNYRDLDVLLIDDIQ 224

Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
            +   +    + FH  N++++    +++ +   P         L SR +   +V I +PD
Sbjct: 225 FIIGKEGTQEEFFHTFNTLYENKRQIIIASDKPPRDIDNLEDRLRSRFEVGLIVDIQMPD 284

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    ++ K        ID ++  YI   ++ ++   E  + K+  ++      +T  L
Sbjct: 285 YETRMAILRKKEELEGYSIDNEVIKYIATNIKSNVRELEGALTKIVAMSRLEKKDVTLEL 344

Query: 235 AAEVLKE 241
           A E+LK+
Sbjct: 345 AEELLKD 351


>gi|94323531|gb|ABF17877.1| chromosomal replication initiator protein [Staphylococcus xylosus]
          Length = 455

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 89/233 (38%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91
            +  ++         A   +   P+     + + G  G GK+ L +       ++   + 
Sbjct: 124 FETFVIGPGNRFPHAASLAVAEAPAQAYNPLFIYGGVGLGKTHLMHAIGHYVLANNPDAK 183

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 184 VIYTSSEKFTNEFIKSIRDNKTERFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 244 HQANKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIGEENLD 302

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L A  LK+  Q 
Sbjct: 303 IPTEALTYIANQIQSNIRELEGALTRVLAFSKLQGQPITTELTAAALKDIIQA 355


>gi|289667649|ref|ZP_06488724.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 442

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            F+       +  + +   +       A++            ++L G +G GK+ L    
Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160

Query: 85  SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123
            +  R                FS + ++L    +D           +L++DI      D 
Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++      +++T   +P       P L SRL     V I  PD +    +
Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++
Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340

Query: 242 TQQC 245
             + 
Sbjct: 341 LLRA 344


>gi|163938014|ref|YP_001642898.1| chromosomal replication initiation protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229014656|ref|ZP_04171770.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides
           DSM 2048]
 gi|229065149|ref|ZP_04200442.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH603]
 gi|229136315|ref|ZP_04265062.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           BDRD-ST196]
 gi|229170193|ref|ZP_04297879.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH621]
 gi|226735778|sp|A9VM90|DNAA_BACWK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|23193191|gb|AAN14420.1|AF319579_1 DnaA [Bacillus weihenstephanensis]
 gi|163860211|gb|ABY41270.1| chromosomal replication initiator protein DnaA [Bacillus
           weihenstephanensis KBAB4]
 gi|228613294|gb|EEK70433.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH621]
 gi|228647187|gb|EEL03275.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           BDRD-ST196]
 gi|228716178|gb|EEL67897.1| Chromosomal replication initiator protein dnaA [Bacillus cereus
           AH603]
 gi|228746667|gb|EEL96556.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides
           DSM 2048]
          Length = 446

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +     +   
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +      +   LAAE LK 
Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDMNADLAAEALKN 344


>gi|146305043|ref|YP_001185508.1| chromosomal replication initiation protein [Pseudomonas mendocina
           ymp]
 gi|145573244|gb|ABP82776.1| chromosomal replication initiator protein DnaA [Pseudomonas
           mendocina ymp]
          Length = 494

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + D+ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 163 FTFDNFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLAKN 220

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 221 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAKKERSQEEFF 278

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 279 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 338

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 339 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 393


>gi|5354184|gb|AAD42393.1|AF157493_1 chromosomal replication initiator protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 484

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 97/264 (36%), Gaps = 34/264 (12%)

Query: 12  VPDKQKNDQPKNKEE---QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSR 65
           VP   K+  P+ K E   Q  F        + D+ +V  A + A R   ++         
Sbjct: 127 VPATPKSTSPEKKAEGEDQNQFE----ERYNFDNFVVGKANDLAYRAACTFAEGGKLDFN 182

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILI 105
            + L G +G GK+ L +    +      ++ A  + +                      +
Sbjct: 183 PLFLYGGTGLGKTHLMHAVGIEYLKRHPNSTALYMSAEKFMYDFVASMRAKDTHSFKARL 242

Query: 106 DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
            +   ++++D+  +   D    + FH +N +      L+++A   P         + SRL
Sbjct: 243 RSADLLMIDDVQFIAGKDSTQEEFFHTMNEVITAGRRLVISADRSPQDLERIESRILSRL 302

Query: 163 KAATVVKISLPDDDF-LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
               V  ++  D +  L  ++ K+ A  Q+ + + +  ++ +R+  ++   E  ++++  
Sbjct: 303 SWGLVADVNPADFELRLNIILKKLEAMPQVSMPEDIVFFLAKRICTNVRELEGALNRVVA 362

Query: 222 LALSRGMGITRSLAAEVLKETQQC 245
            A      I      E L +  + 
Sbjct: 363 YATLSNRPINMDFVTETLADLLRT 386


>gi|58038492|ref|YP_190456.1| chromosomal replication initiation protein [Gluconobacter oxydans
           621H]
 gi|71151799|sp|Q5FUU1|DNAA_GLUOX RecName: Full=Chromosomal replication initiator protein DnaA
 gi|58000906|gb|AAW59800.1| Chromosomal replication initiator protein DnaA [Gluconobacter
           oxydans 621H]
          Length = 479

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 88/255 (34%), Gaps = 29/255 (11%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGP 72
           +   P+++ +    + P     + D  +V    E A          PS      + L G 
Sbjct: 130 QAAAPESRSD---LAVPLDPRFTFDTFIVGKPNEFAYACARRVAEKPSSPGFNPLFLYGG 186

Query: 73  SGSGKSCLANIW-SDKSRSTRFSNIAKSLDSILIDTRKPV------------------LL 113
            G GK+ L +   ++ +R+ + S    S +  +      +                  ++
Sbjct: 187 VGLGKTHLMHAIGTELTRTGKVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMI 246

Query: 114 EDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +D+  L   D    + FH  N++      ++++A   P         L +RL    V  I
Sbjct: 247 DDLQFLIGKDNTQEEFFHTFNALVDAGRQIIVSADKSPSDLSGLEDRLRTRLGCGMVADI 306

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
                +    ++          +  K+  Y+  ++  ++   E  ++++   A   G  +
Sbjct: 307 HATTFELRISILEAKAKASGTHVPSKVLEYLAHKITTNVRELEGALNRLIAHADLVGRPV 366

Query: 231 TRSLAAEVLKETQQC 245
           T     +VLK+  + 
Sbjct: 367 TLDTTQDVLKDMLKA 381


>gi|226942171|ref|YP_002797244.1| chromosomal replication initiation protein [Azotobacter vinelandii
           DJ]
 gi|259645245|sp|C1DFU2|DNAA_AZOVD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226717098|gb|ACO76269.1| Bacterial chromosomal replication initiator protein DnaA
           [Azotobacter vinelandii DJ]
          Length = 478

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 84/236 (35%), Gaps = 34/236 (14%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW------- 84
             + ++ +   + + A     +W    +       + L G  G GK+ L +         
Sbjct: 146 AFTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 203

Query: 85  ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126
                          +D  ++ + + I +        +   +L++DI      +    + 
Sbjct: 204 NPNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAKKERSQEEF 261

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++ +    +++T+  +P         L SR      V +  P+ +    +++K  
Sbjct: 262 FHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKA 321

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              ++ +    A +I QR+  ++   E  + ++   +      IT  L  E LK+ 
Sbjct: 322 EQTKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFTNHPITIELIRESLKDL 377


>gi|305432571|ref|ZP_07401732.1| ATPase [Campylobacter coli JV20]
 gi|304444282|gb|EFM36934.1| ATPase [Campylobacter coli JV20]
          Length = 440

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVI----LVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +         +     + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAISQKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYANILGQEITLELAKSVMKD 334


>gi|78045557|ref|YP_361732.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|123744129|sp|Q3BZT1|DNAA_XANC5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78033987|emb|CAJ21632.1| chromosomal replication initiator protein DnaA [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 442

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            F+       +  + +   +       A++            ++L G +G GK+ L    
Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQRPGDRAHNPLLLYGSTGLGKTHLMFAA 160

Query: 85  SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123
            +  R                FS + ++L    +D           +L++DI      D 
Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++      +++T   +P       P L SRL     V I  PD +    +
Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++
Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340

Query: 242 TQQC 245
             + 
Sbjct: 341 LLRA 344


>gi|134297882|ref|YP_001111378.1| chromosomal replication initiation protein [Desulfotomaculum
           reducens MI-1]
 gi|172044200|sp|A4J0F0|DNAA_DESRM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|134050582|gb|ABO48553.1| chromosomal replication initiator protein DnaA [Desulfotomaculum
           reducens MI-1]
          Length = 441

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 101/264 (38%), Gaps = 29/264 (10%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65
           F+   Q+ DQPK KE     ++        + D  +V ++   A      +   P+    
Sbjct: 79  FILAGQEVDQPKPKERSSEETYINILNPRYTFDTFVVGNSNRFAHAASLAVAESPAKAYN 138

Query: 66  VVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            + + G  G GK+ L +                   S+K  +   ++I         +  
Sbjct: 139 PLFIYGGVGLGKTHLMHAIGHYILENNQNLKVAYVTSEKFTNELINSIRDDQTVEFRNKY 198

Query: 109 KP---VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           +    +L++DI  L+  +    + FH  N++++ +  +++++   P         L SR 
Sbjct: 199 RSMDILLIDDIQFLEKKERTQEEFFHTFNTLYEANKQIIISSDRPPKEIATLEDRLRSRF 258

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           +   +  +  PD +    ++ K      I  I  +  AYI  +++ ++   E  + ++  
Sbjct: 259 EWGLITDMQSPDYETRVAILRKKAQLEAIKNIPDETIAYIADKIQSNIRELEGALIRVSA 318

Query: 222 LALSRGMGITRSLAAEVLKETQQC 245
            +       T  LAAEVLK+    
Sbjct: 319 FSSLEQRDATPQLAAEVLKDVIAP 342


>gi|315500819|ref|YP_004079706.1| chromosomal replication initiator protein dnaa [Micromonospora sp.
           L5]
 gi|315407438|gb|ADU05555.1| chromosomal replication initiator protein DnaA [Micromonospora sp.
           L5]
          Length = 609

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
                 +  ++ S+   A      +   P+     + + G SG GK+ L +         
Sbjct: 272 NPKYMFETFVIGSSNRFAHAASVAVAESPAKAYNPLFIYGSSGLGKTHLLHAIGHYATTL 331

Query: 87  -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
             +RS R+ +  +  +  +   R                +L++DI  L+  +    + FH
Sbjct: 332 GNARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFH 391

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++T+   P         L +R +   +  I  PD +    ++ K  A 
Sbjct: 392 TFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQ 451

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++F    +  +I  R+  S+   E  + ++   A      +  SLA EVL++
Sbjct: 452 ERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRD 504


>gi|167770836|ref|ZP_02442889.1| hypothetical protein ANACOL_02189 [Anaerotruncus colihominis DSM
           17241]
 gi|167666876|gb|EDS11006.1| hypothetical protein ANACOL_02189 [Anaerotruncus colihominis DSM
           17241]
          Length = 439

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 90/236 (38%), Gaps = 30/236 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR-- 92
            + D  +V S+ + A     +    P+     + + G SG GK+ L      + R  R  
Sbjct: 106 YTFDTFIVGSSNKFAHAASLAVAANPANAYNPLFIYGGSGLGKTHLLYAICAEIRKNRPN 165

Query: 93  -------FSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFHIIN 131
                      A  + + + D R             +L++DI  +   +    + FH  N
Sbjct: 166 YNIIYVKGDEFANDIITAIRDQRTAEFRERYRKADVLLVDDIQFIGGKESTQEEFFHTFN 225

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++++ +  +++ +   P         L +R +   +  I +PD +    +I +      I
Sbjct: 226 TLYESNKQIVLASDRPPKEIKTLEDRLRTRFEWGLLADIQIPDFETRIAIIRRKAQLLDI 285

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA----AEVLKETQ 243
            +   +A YI  R++ ++   E  V K+    L +G   +  +A     ++L + Q
Sbjct: 286 QMPDDVAEYIANRLKTNIRQLEGTVKKLKAYKLLQGTNPSIMIAQNAIRDILNDNQ 341


>gi|325288202|ref|YP_004264383.1| chromosomal replication initiator protein DnaA [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963603|gb|ADY54382.1| chromosomal replication initiator protein DnaA [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 446

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 96/268 (35%), Gaps = 30/268 (11%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLID 57
           +  + E    + P+  +++  K        S P     + D  ++ +       A   + 
Sbjct: 80  LTFVVEQEQNYQPEIIESNDQKFG----ILSHPLNRKYTFDTFVIGNGNRFAHAAALAVA 135

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK--- 109
             P+     + L G SG GK+ L +                    +   + +ID+ +   
Sbjct: 136 ESPAKSYNPLFLYGGSGLGKTHLMHAIGHIINRNFPEMKIVYVTGEQFTNEMIDSIRYER 195

Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++++ +  +++++   P      
Sbjct: 196 QVEFRNTYRKVDLLLIDDIQFLAGKEGTQEEFFHTFNTLYEANKQIIISSDRPPREIPTL 255

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +      I+ PD +    ++ K        +  ++  +I   ++ ++   E 
Sbjct: 256 EERLRSRFEWGLTTDINPPDYETRIAILRKKAQLENYIVPDEIITFIASSIQSNIRELEG 315

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
            + K+    +     IT  LA E+LK+ 
Sbjct: 316 ALSKITAFCMLTNQSITVELAEEILKDM 343


>gi|56552252|ref|YP_163091.1| chromosomal replication initiation protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761682|ref|ZP_04759769.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752246|ref|YP_003225139.1| chromosomal replication initiation protein [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|59802902|sp|Q9S493|DNAA_ZYMMO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56543826|gb|AAV89980.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241373990|gb|EER63523.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258551609|gb|ACV74555.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 484

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 97/264 (36%), Gaps = 34/264 (12%)

Query: 12  VPDKQKNDQPKNKEE---QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSR 65
           VP   K+  P+ K E   Q  F        + D+ +V  A + A R   ++         
Sbjct: 127 VPATPKSTSPEKKAEGEDQNQFE----ERYNFDNFVVGKANDLAYRAACTFAEGGKLDFN 182

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILI 105
            + L G +G GK+ L +    +      ++ A  + +                      +
Sbjct: 183 PLFLYGGTGLGKTHLMHAVGIEYLKRHPNSTALYMSAEKFMYDFVASMRAKDTHSFKARL 242

Query: 106 DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
            +   ++++D+  +   D    + FH +N +      L+++A   P         + SRL
Sbjct: 243 RSADLLMIDDVQFIAGKDSTQEEFFHTMNEVITAGRRLVISADRSPQDLERIESRILSRL 302

Query: 163 KAATVVKISLPDDDF-LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
               V  ++  D +  L  ++ K+ A  Q+ + + +  ++ +R+  ++   E  ++++  
Sbjct: 303 SWGLVADVNPADFELRLNIILKKLEAMPQVSMPEDIVFFLAKRICTNVRELEGALNRVVA 362

Query: 222 LALSRGMGITRSLAAEVLKETQQC 245
            A      I      E L +  + 
Sbjct: 363 YATLSNRPINMDFVTETLADLLRT 386


>gi|319941729|ref|ZP_08016051.1| hypothetical protein HMPREF9464_01270 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804662|gb|EFW01529.1| hypothetical protein HMPREF9464_01270 [Sutterella wadsworthensis
           3_1_45B]
          Length = 246

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 12/227 (5%)

Query: 25  EEQLFFSFPRCLGISR---DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +Q     P   G  R   ++ +V S  E A  L         + + L GP G+G S L 
Sbjct: 8   PDQYLLDLPELQGRDRPTFENFVVGSNSEAAAALARMAADEGPKFLYLYGPRGAGLSHLL 67

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIH-QYDSS 139
             +   + +  +         I     K   ++DID LD     QL  + N+++   D+ 
Sbjct: 68  EAYLPGTAAALYP------VPIYQPGVKRYAVDDIDALDEGYARQLLQLQNAVYVDPDAR 121

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           L+   R  P    +    + +RL       +   +++   + + +  A R I +   +  
Sbjct: 122 LVCAGRLPPKELKL-PAGVINRLLGGLCYAVEPLNEEDRIRELARQAALRGILLTPDIGQ 180

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           +I   + R +    +++D  + +AL     +T  +  E  +     +
Sbjct: 181 WISAHLPRDMRSLTRVMDVANQIALHAQRKVTLQVIREAARAAGMAE 227


>gi|315057442|gb|ADT71771.1| Chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 440

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + D  +V  + + A     +             + + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFDSFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|57236915|ref|YP_178030.1| chromosomal replication initiation protein [Campylobacter jejuni
           RM1221]
 gi|71151795|sp|Q5HXF5|DNAA_CAMJR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|57165719|gb|AAW34498.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni RM1221]
          Length = 440

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + D  +V  + + A     +             + + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFDSFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|121612751|ref|YP_999720.1| chromosomal replication initiation protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167004697|ref|ZP_02270455.1| chromosomal replication initiation protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|205355742|ref|ZP_03222512.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|166201874|sp|A1VX79|DNAA_CAMJJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|87248987|gb|EAQ71949.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|205346519|gb|EDZ33152.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 440

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + D  +V  + + A     +             + + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFDSFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|289662284|ref|ZP_06483865.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 442

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            F+       +  + +   +       A++            ++L G +G GK+ L    
Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160

Query: 85  SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123
            +  R                FS + ++L    +D           +L++DI      D 
Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++      +++T   +P       P L SRL     V I  PD +    +
Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++
Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340

Query: 242 TQQC 245
             + 
Sbjct: 341 LLRA 344


>gi|302864509|ref|YP_003833146.1| chromosomal replication initiator protein DnaA [Micromonospora
           aurantiaca ATCC 27029]
 gi|302567368|gb|ADL43570.1| chromosomal replication initiator protein DnaA [Micromonospora
           aurantiaca ATCC 27029]
          Length = 607

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
                 +  ++ S+   A      +   P+     + + G SG GK+ L +         
Sbjct: 270 NPKYMFETFVIGSSNRFAHAASVAVAESPAKAYNPLFIYGSSGLGKTHLLHAIGHYATTL 329

Query: 87  -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
             +RS R+ +  +  +  +   R                +L++DI  L+  +    + FH
Sbjct: 330 GNARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFH 389

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++T+   P         L +R +   +  I  PD +    ++ K  A 
Sbjct: 390 TFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQ 449

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++F    +  +I  R+  S+   E  + ++   A      +  SLA EVL++
Sbjct: 450 ERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRD 502


>gi|88705400|ref|ZP_01103111.1| Bacterial chromosomal replication initiator protein, DnaA
           [Congregibacter litoralis KT71]
 gi|88700490|gb|EAQ97598.1| Bacterial chromosomal replication initiator protein, DnaA
           [Congregibacter litoralis KT71]
          Length = 391

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 30/233 (12%)

Query: 38  ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW---------- 84
            +    +   + + A+     +   P      + L G  G GK+ L +            
Sbjct: 60  YTFSTFVEGKSNQLALAAANQVSENPGGAYNPLFLYGGVGLGKTHLMHAVGNALKLNKPD 119

Query: 85  ------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQLFHI 129
                       +D  ++ + + IA         +   +L++DI      D +  + FH 
Sbjct: 120 ARIVYLHSERFVADMVKALQLNAIADFKR--YYRSVDALLIDDIQFFAKKDRSQEEFFHT 177

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++ +    +++T   +P         L SR      V +  PD +    +++      
Sbjct: 178 FNALLEGGQQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPDLETRVAILMNKATQA 237

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +    A +I QR+  ++   E  + ++   A      I   L  E LK+ 
Sbjct: 238 RLNLPPDAAFFIAQRIRSNVRELEGALKRVIASANFTRRPIDVELVKESLKDL 290


>gi|255323604|ref|ZP_05364734.1| chromosomal replication initiator protein DnaA [Campylobacter
           showae RM3277]
 gi|255299318|gb|EET78605.1| chromosomal replication initiator protein DnaA [Campylobacter
           showae RM3277]
          Length = 436

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 85/232 (36%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--------- 82
               + ++ +V  + + A     +      ++   + + GP+G GK+ L           
Sbjct: 102 NPSYTFENFVVGDSNQFAFLSAKAVSEQLGKIYNPLFIYGPTGLGKTHLLQSVGNFCLNG 161

Query: 83  ---IWSDKSRSTRFSNIAKSLDSILIDTRK------PVLLEDIDLLDFND---TQLFHII 130
              +    S            +  +   R+       +L++D+  L   D    + FH  
Sbjct: 162 GKMVICVTSEQFITDFTYNLNNHSMERFREKYRNCDVLLIDDVQFLGKTDKIQEEFFHTF 221

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +H  +  ++MT+   P         L +R +   +  I+ P+ D    +I K     +
Sbjct: 222 NELHAKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIIADITPPELDTKIAIIKKKCEFDK 281

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I++DK +  YI   M  ++   E  +  ++  A      IT   A  +L++ 
Sbjct: 282 IYLDKDVINYIATNMGDNIREIESAIINLNAYARLMRQEITLEFAKNILRDQ 333


>gi|73661310|ref|YP_300091.1| chromosomal replication initiation protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123747926|sp|Q4A180|DNAA_STAS1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|72493825|dbj|BAE17146.1| chromosomal replication initiator protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 455

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 88/233 (37%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD-----KSRST 91
            +  ++         A   +   P+     + + G  G GK+ L +            + 
Sbjct: 124 FETFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLDNNPDAK 183

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 184 VIYTSSEKFTNEFIKSIRDNKTERFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ +  +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 244 HQANKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIGEENLN 302

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +G  IT  L AE LK+  Q 
Sbjct: 303 IPTEALTYIANQIQSNIRELEGALTRVLAFSKLQGQPITTELTAEALKDIIQA 355


>gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein [Eubacterium rectale
           ATCC 33656]
 gi|238874105|gb|ACR73812.1| chromosomal replication initiation protein [Eubacterium rectale
           ATCC 33656]
          Length = 453

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 94/281 (33%), Gaps = 39/281 (13%)

Query: 4   MKEDYSFFVPDK------QKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQAVR 54
           ++ D  F +PD+      + ND P+  E+Q              + D  +V +    A  
Sbjct: 75  IEYDIQFILPDQAQSLKFKNNDTPQL-EQQTPVKGDHSNLNPNYTFDTFVVGNNNRFAHS 133

Query: 55  L---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILID 106
               +   P      + + G  G GK+ L +     I      +      ++   + +I+
Sbjct: 134 ASLAVAESPGEAYNPLYIYGGPGLGKTHLMHSIGHFIIDQNPDTKVLYVTSEEFTNEVIE 193

Query: 107 TRK------------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145
           + +                   ++++DI  +   +    + FH  N++      +++T+ 
Sbjct: 194 SIRNGNSSAMTKFRDKYRTVDVLMIDDIQFIIGKESTQEEFFHTFNTLQTQGKQIILTSD 253

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SR +   +  I  PD +    ++ K        ID  +  YI   +
Sbjct: 254 KPPKEMETLEERIRSRFEWGLMADIGTPDYETRMAILRKKAETDNFDIDDDILNYIASNI 313

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             ++   E  ++K+          IT  +A   L      D
Sbjct: 314 SSNIRELEGALNKLLAFHNLEHTHITMDIAERELSNIITPD 354


>gi|315223902|ref|ZP_07865748.1| DNA-directed DNA replication initiator protein [Capnocytophaga
           ochracea F0287]
 gi|314946131|gb|EFS98134.1| DNA-directed DNA replication initiator protein [Capnocytophaga
           ochracea F0287]
          Length = 473

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 88/266 (33%), Gaps = 44/266 (16%)

Query: 10  FFVPDKQK-NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           F +P  ++    P+    Q           + D+ +  ++   A     +  + P     
Sbjct: 118 FVIPGIREITVDPQLNLHQ-----------NFDNFVEGASNRLARSAGMAVANKPGGTAF 166

Query: 67  --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107
             + + G  G GK+ LA+                   ++K      S             
Sbjct: 167 NPLFIFGGVGLGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLN 226

Query: 108 --------RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                      ++++DI  L          FHI N +HQ    +++T+   PV       
Sbjct: 227 DFIHFYQLIDVLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQ 286

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR K     ++  PD +   K++   F +    I   + AY+ + +  ++   E + 
Sbjct: 287 RLLSRFKWGLSAELQTPDYETRYKILENKFYNDGAEIGDDIIAYLAENIRTNVRELEGVS 346

Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242
           + +   A       +  LA  ++ ++
Sbjct: 347 NSLIAQAAFNRKEYSIELAQSIIDKS 372


>gi|284925304|gb|ADC27656.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni IA3902]
          Length = 440

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +             + + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|312193898|ref|YP_004013959.1| chromosomal replication initiator protein DnaA [Frankia sp. EuI1c]
 gi|311225234|gb|ADP78089.1| chromosomal replication initiator protein DnaA [Frankia sp. EuI1c]
          Length = 512

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKS 78
           ++ E +             +  ++  +      A   +   P+     + + G SG GK+
Sbjct: 159 RDPEPRPSEPARLNPRYVFETFVIGDSNRFPHAASVAVAEAPAKAYNPLFIYGDSGLGKT 218

Query: 79  CLANIWSDKSRSTRFSNIAKS----------LDSILIDTRKP----------VLLEDIDL 118
            L +     ++        K           ++SI  D ++           +L++DI  
Sbjct: 219 HLLHAIGHYTKKLYPDAQVKYVSTEEFTNDFINSIRDDRQQAFQRRYRDIDVLLVDDIQF 278

Query: 119 LDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           L+  +    + FH  N +H  +  L++++   P         L SR +   +  ++ PD 
Sbjct: 279 LENKERTQEEFFHTFNVLHDTEKQLVISSDRSPRQLSALEDRLRSRFEWGLITDVTPPDL 338

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           +    ++ K  A  ++ +   +  YI   +ER++   E  + ++   A      + R+LA
Sbjct: 339 ETRIAILSKKAAIERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASLNKSHVDRTLA 398

Query: 236 AEVLKET 242
             VL++ 
Sbjct: 399 EIVLRDL 405


>gi|153951168|ref|YP_001397274.1| chromosomal replication initiation protein [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|166201873|sp|A7H194|DNAA_CAMJD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|152938614|gb|ABS43355.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 440

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +             + + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|86150555|ref|ZP_01068779.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85839007|gb|EAQ56272.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni CF93-6]
          Length = 440

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +             + + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|88597701|ref|ZP_01100934.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|218561694|ref|YP_002343473.1| chromosomal replication initiation protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|14194686|sp|Q9PJB0|DNAA_CAMJE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|88190005|gb|EAQ93981.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112359400|emb|CAL34182.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|315930328|gb|EFV09416.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 440

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +             + + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|319440487|ref|ZP_07989643.1| chromosomal replication initiation protein [Corynebacterium
           variabile DSM 44702]
          Length = 564

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 84/240 (35%), Gaps = 28/240 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90
               + D  +   + +       +    P +    + + G  G GK+ L +     +R  
Sbjct: 224 NPKYTFDTFVTGPSNQFPAAACRAVAENPGKAYNPLFIYGQPGLGKTHLLHAIGHYAREL 283

Query: 91  ------TRFSNIAKSLDSILIDTRKPVLLE-------DIDLLDFND-----------TQL 126
                    S+   + + I      P+ L+       ++DLL  +D            + 
Sbjct: 284 KPEIRVRYVSSEEMTNEFINAIQGGPLALDQFKRNYRNLDLLIVDDIQFLQGKESTQEEF 343

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N+++Q +  +++++   P         L +R +      +  PD +    ++ K  
Sbjct: 344 FHTFNALYQANHQIVLSSDRPPSQLTTLEDRLRTRFEGGLTTDVKTPDLETRMAILAKKS 403

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
                 + + +  +I  R E S+   E  + ++       G  IT + A  V+K+    D
Sbjct: 404 LLNGAAVPRDVLEFIASRNESSIRELEGALTRVVAYCSMTGEPITIAAAEVVVKDILPQD 463


>gi|93006678|ref|YP_581115.1| putative DnaA family protein [Psychrobacter cryohalolentis K5]
 gi|92394356|gb|ABE75631.1| regulatory inactivation of DnaA Hda protein [Psychrobacter
           cryohalolentis K5]
          Length = 270

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 15/234 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL  +       S  D          +  +          + L G   +GKS L +  
Sbjct: 3   EAQLSLNLDIKHDASLSDFA-GPGWMSIIDAVRQLHVGLIGQLYLFGSPATGKSHLLSAI 61

Query: 85  SDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132
            +       S I  SL+ ++         ++    + ++D+++++ N      LFH+IN 
Sbjct: 62  CESFIEMDKSAICLSLNELIHTDVNVLSSLENFSLIAIDDLEVIEQNSQWQEALFHLINR 121

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQI 191
             +    LL  A          L DL +RL  A   K+    D    E ++  +   R  
Sbjct: 122 SREGQRQLLFAANKPASELPFQLRDLLTRLAQAPSFKVPTGHDFADREALLQSILRRRGW 181

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLKETQQ 244
             D+++  Y++      +    ++++ +    +      I++++ A+ L+   +
Sbjct: 182 QFDERITNYLLTEGPHRIGAMMEVLNYIQPMFSNLGRSNISKAVIADALRTIDE 235


>gi|295425825|ref|ZP_06818506.1| DNA-directed DNA replication initiator protein [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064518|gb|EFG55445.1| DNA-directed DNA replication initiator protein [Lactobacillus
           amylolyticus DSM 11664]
          Length = 459

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 89/248 (35%), Gaps = 26/248 (10%)

Query: 21  PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77
           P+ ++++           + D+ +     + A     +    P      + + G  G GK
Sbjct: 110 PQPRQDEFAKDLKLNDKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFGGVGLGK 169

Query: 78  SCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDID 117
           + L         +++  +      +++  +  I++ K                +L++DI 
Sbjct: 170 THLMQAIGHQMLAERPNAKIVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQ 229

Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
                +    + FH   +++     ++MT+   P         L SR      V+I+ PD
Sbjct: 230 FFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPD 289

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    ++ K      + ID     YI  +++ ++   E  + K++  A      I  +L
Sbjct: 290 LETRIAILRKKAEADGLTIDDNTLDYIASQVDTNIRELEGALVKVEAHATIEKEDINVNL 349

Query: 235 AAEVLKET 242
           A + L + 
Sbjct: 350 ARDALADL 357


>gi|325926219|ref|ZP_08187577.1| chromosomal replication initiator protein DnaA [Xanthomonas
           perforans 91-118]
 gi|325543401|gb|EGD14826.1| chromosomal replication initiator protein DnaA [Xanthomonas
           perforans 91-118]
          Length = 442

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            F+       +  + +   +       A++            ++L G +G GK+ L    
Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160

Query: 85  SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123
            +  R                FS + ++L    +D           +L++DI      D 
Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++      +++T   +P       P L SRL     V I  PD +    +
Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++
Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340

Query: 242 TQQC 245
             + 
Sbjct: 341 LLRA 344


>gi|325577775|ref|ZP_08148050.1| ribosomal subunit interface protein [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160520|gb|EGC72646.1| ribosomal subunit interface protein [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 455

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWP-SRVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            ++ +   + + A  +   +   P  P +    L G +G GK+ L +     I ++K  +
Sbjct: 126 FENFVEGKSNQLARAVGQKLALAPGEPTANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 185

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI N+
Sbjct: 186 RVLYIHANNFMQHMVKAMRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 245

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 246 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHHME 305

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 306 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGHIDIDFVRDTLKD 354


>gi|313902784|ref|ZP_07836181.1| chromosomal replication initiator protein DnaA [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466904|gb|EFR62421.1| chromosomal replication initiator protein DnaA [Thermaerobacter
           subterraneus DSM 13965]
          Length = 460

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 90/238 (37%), Gaps = 25/238 (10%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD--- 86
           P     + +  +  S    A     +    P+R    + + G  G GK+ L    +    
Sbjct: 123 PLNPKYTFETFVTGSGNRLAHAAALAVAEAPARTYNPLFIYGGVGLGKTHLMQAVAHHVL 182

Query: 87  -KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127
            K  S       ++  + +I+  +                +L++DI  L   +    + F
Sbjct: 183 RKHGSRVAYVSCETFTNEMINAIRDGKTLEFRNRYRNVDVLLVDDIQFLAGKESTQEEFF 242

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K   
Sbjct: 243 HTFNALHEANRQIVISSDRPPKEIPTLEERLRSRFEWGLISDIQPPDFETRVAILRKKAQ 302

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             ++ +   + A+I +R++ ++   E  + ++   A      I   LAAEVLK+    
Sbjct: 303 LEKLRVPDDVIAFIAERIDTNIRELEGALIRLVAFASLTNHEIDLDLAAEVLKDILPP 360


>gi|237756304|ref|ZP_04584858.1| chromosomal replication initiator protein DnaA
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691531|gb|EEP60585.1| chromosomal replication initiator protein DnaA
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 459

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 90/237 (37%), Gaps = 26/237 (10%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----I 83
                  + D+L+V +  + A +   +      ++   + + G  G GK+ L +     +
Sbjct: 120 LSLNPKYTFDNLIVGNNNKVAFQACLAVTENLGKIYNPLFIYGDVGLGKTHLLHGTAYHV 179

Query: 84  WSDKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFNDT---Q 125
            +  S +      A +  S L                     +L++DI  L   +    +
Sbjct: 180 LAKNSTAKIIYTTADTFASELFSYLEKGMILEFRKKYREVDLLLIDDIQFLVGKERTQIE 239

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            +HI N ++     +++++   P         L SR  +  +V+I+ PD +    + +K 
Sbjct: 240 FYHIFNVLYSLGKQIILSSDQPPSKLNGIEKRLISRFSSGLIVEITKPDLETKINITLKK 299

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +  +   + +  +I + +  S+   E  + ++   +   G  IT  +A  VLK+ 
Sbjct: 300 MKELNVEFSRDVVLFIAKTVNTSVRELEGSIKRLKAYSEIMGRPITLDVARTVLKDV 356


>gi|256820765|ref|YP_003142044.1| chromosomal replication initiation protein [Capnocytophaga ochracea
           DSM 7271]
 gi|256582348|gb|ACU93483.1| chromosomal replication initiator protein DnaA [Capnocytophaga
           ochracea DSM 7271]
          Length = 473

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 89/266 (33%), Gaps = 44/266 (16%)

Query: 10  FFVPDKQK-NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           F +P  ++    P+    Q           + D+ +  ++   A     +  + P     
Sbjct: 118 FVIPGIREITVDPQLNLHQ-----------NFDNFVEGASNRLARSAGMAVANKPGGTAF 166

Query: 67  --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107
             + + G  G GK+ LA+                   ++K      S             
Sbjct: 167 NPLFIFGGVGLGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLN 226

Query: 108 --------RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                      ++++DI  L          FHI N +HQ    +++T+   PV       
Sbjct: 227 DFIHFYQLIDVLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQ 286

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR K     ++  PD +   K++   F +    I + + AY+ + +  ++   E + 
Sbjct: 287 RLLSRFKWGLSAELQTPDYETRYKILENKFYNDGAEIGEDIIAYLAENIRTNVRELEGVS 346

Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242
           + +   A       +  LA  ++ ++
Sbjct: 347 NSLIAQAAFNRKEYSIELAQSIIDKS 372


>gi|227494189|ref|ZP_03924505.1| DNA-directed DNA replication initiator protein [Actinomyces
           coleocanis DSM 15436]
 gi|226831923|gb|EEH64306.1| DNA-directed DNA replication initiator protein [Actinomyces
           coleocanis DSM 15436]
          Length = 464

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 83/239 (34%), Gaps = 26/239 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS 85
            F          D  ++ S+   A          P +V   + + G SG GK+ L     
Sbjct: 117 AFDSRLNPKYVFDTFVIGSSNRFANAAAAQTAEQPGKVYNPLFIYGDSGLGKTHLIQAIG 176

Query: 86  --DKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND-- 123
                 +        S +    D    +                  L++DI  +   +  
Sbjct: 177 NYALELAPHLKVRYVSSEEFTNDFINSIRTGRAEDFQRRYREIDILLIDDIQFIQGKEQT 236

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N+++  +  +++T+   P         L SR +    V I  P+ +    ++
Sbjct: 237 VEEFFHTFNTLYNAEKQVIITSDVPPKMLSGLEDRLRSRFEMGLTVDIKPPELETRIAIL 296

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            K      + +D ++  YI  R+  ++   E  + ++   A      +TRSLA  VLK+
Sbjct: 297 RKKTIAENLDVDNEVLEYIASRISSNIRELEGALIRVTAYANLTKQEVTRSLAEVVLKD 355


>gi|213962527|ref|ZP_03390789.1| chromosomal replication initiator protein DnaA [Capnocytophaga
           sputigena Capno]
 gi|213954853|gb|EEB66173.1| chromosomal replication initiator protein DnaA [Capnocytophaga
           sputigena Capno]
          Length = 473

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 89/266 (33%), Gaps = 44/266 (16%)

Query: 10  FFVPDKQK-NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           F +P  ++    P+    Q           + D+ +  ++   A     +  + P     
Sbjct: 118 FVIPGIREITVDPQLNLHQ-----------NFDNFVEGASNRLARSAGMAVANKPGGTAF 166

Query: 67  --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107
             + + G  G GK+ LA+                   ++K      S             
Sbjct: 167 NPLFIFGGVGLGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLN 226

Query: 108 --------RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                      ++++DI  L          FHI N +HQ    +++T+   PV       
Sbjct: 227 DFIHFYQLIDVLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQ 286

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR K     ++  PD +   K++   F +    I + + AY+ + +  ++   E + 
Sbjct: 287 RLLSRFKWGLSAELQTPDYETRYKILENKFYNDGAEIGEDIIAYLAENIRTNVRELEGVS 346

Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242
           + +   A       +  LA  ++ ++
Sbjct: 347 NSLIAQAAFNRKEYSIELAQSIIDKS 372


>gi|320331110|gb|EFW87081.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330881908|gb|EGH16057.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 511

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210

Query: 67  -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T+  +P         L S
Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + ++ 
Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             +   G  IT  L  E LK+ 
Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410


>gi|104779317|ref|YP_605815.1| chromosomal replication initiation protein [Pseudomonas entomophila
           L48]
 gi|123255134|sp|Q1I2G4|DNAA_PSEE4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|95108304|emb|CAK12998.1| Chromosomal replication initiator protein DnaA [Pseudomonas
           entomophila L48]
          Length = 508

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + +  +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 177 FTFETFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 234

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 235 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 292

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 293 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 352

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 353 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 407


>gi|320449107|ref|YP_004201203.1| chromosomal replication initiator protein DnaA [Thermus scotoductus
           SA-01]
 gi|320149276|gb|ADW20654.1| chromosomal replication initiator protein DnaA [Thermus scotoductus
           SA-01]
          Length = 447

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 95/235 (40%), Gaps = 30/235 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + ++ +V      A     +    P R    + + G  G GK+ L +     S + 
Sbjct: 114 NPKYTFENFVVGPNNSMAHAAAVAVAESPGRAYNPLFIYGGVGLGKTHLMHA-VGHSVAK 172

Query: 92  RFSNI------AKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127
           RF ++       ++  + LI+  +                +L++DI  +   +    + F
Sbjct: 173 RFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDIQFIAGKERTQEEFF 232

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++++    +++++   P         L SR +   +  I  PD +    ++     
Sbjct: 233 HTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIAILKMNAE 292

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKE 241
            R + I +++  YI +++  ++   E  L+  +   +L  G+ +TR++AA+ L +
Sbjct: 293 QRGLRISEEVLEYIARQVTSNIRELEGALMRTIAYASL-NGVELTRAVAAKALSD 346


>gi|326383909|ref|ZP_08205593.1| chromosomal replication initiation protein [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326197368|gb|EGD54558.1| chromosomal replication initiation protein [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 539

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 94/256 (36%), Gaps = 34/256 (13%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
           ++++   P N    L          + D  ++ ++   A     +    P+R    + + 
Sbjct: 186 EQRETSAPDNGTTSL------HPKYTFDTFVIGASNRFAHASAVAVAENPARAYNPMFIW 239

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNI-----------AKSLDSILIDTRKP--------- 110
           G SG GK+ L +  +       F  +              ++S+  D R           
Sbjct: 240 GESGLGKTHLLHA-AGHYSQRLFPGMRVKYVSTEEFTNDFINSLRDDRRVAFKRRYRDID 298

Query: 111 -VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI  L+  +    + FH  N++H  +  +++++   P         L +R +   
Sbjct: 299 MLLIDDIQFLEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEDRLRTRFEWGL 358

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  +  PD +    ++ K     ++     +   I  ++ER++   E  + ++   A   
Sbjct: 359 ITDVQPPDLETRIAILRKKAQMDKLAAPDDVLELIASKIERNIRELEGALIRVTAFASLN 418

Query: 227 GMGITRSLAAEVLKET 242
              +  +LA  VLK  
Sbjct: 419 NTELDTTLAEVVLKAL 434


>gi|126724505|ref|ZP_01740348.1| chromosomal replication initiation protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126705669|gb|EBA04759.1| chromosomal replication initiation protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 460

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLAN--IWSDK 87
           P       D  +V    E A                 + L G  G GK+ L +   W  +
Sbjct: 119 PLDARFQFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHSIAWQLQ 178

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
           +R+     +  S +                    +  +   ++++D+  +   D    + 
Sbjct: 179 TRTPNLKVVYLSAEQFMYRFVQSLRDRSTMDFKQIFRSVDVLMVDDVQFIAGKDSTQDEF 238

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++      ++++    P         + SRL++  VV +   D +    ++ +  
Sbjct: 239 FHTFNALVDQGRQIIISGDRSPSEMNGLDDRIQSRLQSGLVVDLHPTDYELRLGILQQKV 298

Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              +     + I   +  ++  R+  ++   E  + ++   A   G  IT  L  + L +
Sbjct: 299 ELYKSQYSDLVIAPGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREITMDLTQDCLAD 358

Query: 242 TQQC 245
             + 
Sbjct: 359 ILRS 362


>gi|84497194|ref|ZP_00996016.1| chromosomal replication initiator protein [Janibacter sp. HTCC2649]
 gi|84382082|gb|EAP97964.1| chromosomal replication initiator protein [Janibacter sp. HTCC2649]
          Length = 516

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 93/256 (36%), Gaps = 27/256 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVIL 69
           P   +        EQ+  +       + D  ++ ++      A   +   P+     + +
Sbjct: 157 PGALRPRPGATVPEQVELT-RLNPKYTFDTFVIGASNRFANAAALAVAETPAKAYNPLFI 215

Query: 70  VGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK-------------- 109
            G SG GK+ L +     +R+       R+ N  +  +  +   R               
Sbjct: 216 YGESGLGKTHLLHAIGHYARNLYPHVKVRYVNSEEFTNDFINSIRDDKAANFQRRYRDVD 275

Query: 110 PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI  L        + FH  N++H  +  +++T+   P         + SR +   
Sbjct: 276 VLLIDDIQFLQGKVQTQEEFFHTFNTLHNANKQVVITSDLPPKLLSGFEERMRSRFEWGL 335

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  +  PD +    ++ K  A  ++ +   +  +I  R+  ++   E  + ++   A   
Sbjct: 336 MTDVQPPDLETRIAILRKKAAQEKLSVPDDVLEFIASRISTNIRELEGALIRVTAFASLN 395

Query: 227 GMGITRSLAAEVLKET 242
              +  SLA  VLK+ 
Sbjct: 396 RQPVDISLAEIVLKDL 411


>gi|21240775|ref|NP_640357.1| chromosomal replication initiation protein [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|38257669|sp|Q8PRG2|DNAA_XANAC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|21106039|gb|AAM34893.1| chromosomal replication initiator [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 442

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            F+       +  + +   +       A++            ++L G +G GK+ L    
Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160

Query: 85  SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123
            +  R                FS + ++L    +D           +L++DI      D 
Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++      +++T   +P       P L SRL     V I  PD +    +
Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++
Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340

Query: 242 TQQC 245
             + 
Sbjct: 341 LLRA 344


>gi|294627438|ref|ZP_06706022.1| chromosomal replication initiation protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294665122|ref|ZP_06730425.1| chromosomal replication initiation protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292598259|gb|EFF42412.1| chromosomal replication initiation protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292605123|gb|EFF48471.1| chromosomal replication initiation protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 442

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            F+       +  + +   +       A++            ++L G +G GK+ L    
Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160

Query: 85  SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123
            +  R                FS + ++L    +D           +L++DI      D 
Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++      +++T   +P       P L SRL     V I  PD +    +
Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++
Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340

Query: 242 TQQC 245
             + 
Sbjct: 341 LLRA 344


>gi|270289892|ref|ZP_06196118.1| chromosomal replication initiator protein DnaA [Pediococcus
           acidilactici 7_4]
 gi|304385855|ref|ZP_07368199.1| chromosomal replication initiator protein DnaA [Pediococcus
           acidilactici DSM 20284]
 gi|270281429|gb|EFA27261.1| chromosomal replication initiator protein DnaA [Pediococcus
           acidilactici 7_4]
 gi|304328359|gb|EFL95581.1| chromosomal replication initiator protein DnaA [Pediococcus
           acidilactici DSM 20284]
          Length = 446

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 92/256 (35%), Gaps = 29/256 (11%)

Query: 16  QKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVIL 69
           Q+  +P++ ++   F           + D  ++ S  + A     +    P      +  
Sbjct: 89  QQAQKPQSTDKSSSFSTEDTQLNSRYTFDTFVIGSGNQMAHAAAMAVSDEPGVLYNPLFF 148

Query: 70  VGPSGSGKSCLANIWSDK-------SRSTRFSNIAKSLDSILIDTRK------------- 109
            G  G GK+ L +    +       +R    ++ A + D I    +              
Sbjct: 149 YGGVGLGKTHLMHAIGHQLLENDPQTRVKYVTSEAFTNDFINSIQKNTTEEFHEKYRNVD 208

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++D+      +    + FH   +++     +++T+   P         L SR K   
Sbjct: 209 LLLVDDVQFFADKEATQEEFFHTFEALYNAQKQIVLTSDRLPNEIPKLQERLVSRFKWGL 268

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            V I+ PD +    ++ +      + I  +   +I  R++ ++   E  + ++   A  +
Sbjct: 269 SVDITPPDLETRIAILREKAQADNVEIPDETLDFIANRIDSNIRELEGAMARIQAYAQLQ 328

Query: 227 GMGITRSLAAEVLKET 242
              IT  LAA+ L+  
Sbjct: 329 NAAITTDLAADALRSL 344


>gi|317120850|ref|YP_004100853.1| chromosomal replication initiator protein DnaA [Thermaerobacter
           marianensis DSM 12885]
 gi|315590830|gb|ADU50126.1| chromosomal replication initiator protein DnaA [Thermaerobacter
           marianensis DSM 12885]
          Length = 459

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 89/238 (37%), Gaps = 25/238 (10%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD--- 86
           P     + D  +  S    A     +    P+R    + + G  G GK+ L    +    
Sbjct: 122 PLNPKYTFDTFVTGSGNRLAHAAALAVAEAPARTYNPLFIYGGVGLGKTHLMQAVAHHVL 181

Query: 87  -KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127
            K  S       ++  + +I+  +                +L++DI  L   +    + F
Sbjct: 182 RKHGSRVAYVSCETFTNEMINAIRDGKTLEFRNRYRNVDVLLVDDIQFLAGKESTQEEFF 241

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H+ +  +++++   P         L SR +   +  I  PD +    ++ K   
Sbjct: 242 HTFNALHEANRQIVISSDRPPKEIPTLEERLRSRFEWGLISDIQPPDFETRVAILRKKAQ 301

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             ++ +   + A+I +R++ ++   E  + ++   A      I   LA EVLK+    
Sbjct: 302 LEKLRVPDDVIAFIAERIDTNIRELEGALIRLVAFASLTNHHIDLDLAQEVLKDILPP 359


>gi|298243778|ref|ZP_06967585.1| chromosomal replication initiator protein DnaA [Ktedonobacter
           racemifer DSM 44963]
 gi|297556832|gb|EFH90696.1| chromosomal replication initiator protein DnaA [Ktedonobacter
           racemifer DSM 44963]
          Length = 514

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 24/229 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               S D  +V ++   A      +   P      + L G  G GK+ L +    +   T
Sbjct: 180 NPRYSFDTFIVGNSNRLAHAASLAVAEAPGESYNPLFLYGGVGLGKTHLLHAIGQQGVQT 239

Query: 92  RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFHII 130
             + +  S +    +    +                  L++DI  +      + + FH  
Sbjct: 240 GLAVLYVSSEQFTNEIINAIRYRTTEEFRAKYRSVDILLVDDIQFIAGKESTEEEFFHTF 299

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           NS+H+    +++ +   P +       L SR +   V  I  PD +    ++        
Sbjct: 300 NSLHEMSKQIVICSDRPPKAIASLEERLRSRFEWGLVADIQPPDLETRMAILRVKADALH 359

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             +  ++ +YI  R++ ++   E  ++++        + +T  +A   +
Sbjct: 360 YRVPDEIISYIAGRVQTNIRELEGCLNRLMAYQQLHRVDLTLDVARAAM 408


>gi|281421238|ref|ZP_06252237.1| bacterial DnaA protein helix-turn-helix protein [Prevotella copri
           DSM 18205]
 gi|281404773|gb|EFB35453.1| bacterial DnaA protein helix-turn-helix protein [Prevotella copri
           DSM 18205]
          Length = 471

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 79/240 (32%), Gaps = 29/240 (12%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCL---------- 80
              ++ ++ +   +        + + +   +     + + GPSGSGK+ L          
Sbjct: 133 DPKLTFNNYMEGDSNKLPRSVGLSIAEHPNTTQFNPMFIYGPSGSGKTHLVNAIGLKAKQ 192

Query: 81  -----------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL--- 126
                      A ++  +       N +         +   ++++DI         L   
Sbjct: 193 MYPQKRVLYVSARLFQTQYTDAVLHNASNDF-INFYQSIDMLIVDDIQEWAGKAKTLNTF 251

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FHI N + +    +++     PV        L +R     V ++  P+      ++    
Sbjct: 252 FHIFNHLFRNGKRIILACDRPPVELKDMPDRLLTRFSCGLVCELEKPNIQLCVDILSNKI 311

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
               + I   + ++I Q    S+   +  V+ +   ++     I   LA  V+K   + D
Sbjct: 312 RRDGLKIPADVISFIAQTCNGSVRDLQGAVNGLLAYSIVYNSSIDIRLAERVIKRAVKVD 371


>gi|325915701|ref|ZP_08178006.1| chromosomal replication initiator protein DnaA [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538118|gb|EGD09809.1| chromosomal replication initiator protein DnaA [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 442

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            F+       +  + +   +       A++            ++L G +G GK+ L    
Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160

Query: 85  SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123
            +  R                FS + ++L    +D           +L++DI      D 
Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++      +++T   +P       P L SRL     V I  PD +    +
Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++
Sbjct: 281 VLAKARERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340

Query: 242 TQQC 245
             + 
Sbjct: 341 LLRA 344


>gi|307746965|gb|ADN90235.1| Chromosomal replication initiator protein dnaA [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 440

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 28/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI------DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
               + +  +V  + + A          D         + + GP+G GK+ L     + S
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIIHKDKLGK-LYNPIFVYGPTGLGKTHLLQAVGNAS 160

Query: 89  RSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLF 127
                  I  + ++ + D                      +L++D+  L   D    + F
Sbjct: 161 LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFF 220

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            I N I   D  ++MT+   P      +  L SR     +  I+ P  D    +I K   
Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGIIERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 281 FNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|195973852|gb|ACG63491.1| chromosomal replication initiator protein DnaA [Francisella
           noatunensis subsp. orientalis]
 gi|225624833|gb|ACN96551.1| DnaA [Francisella noatunensis subsp. orientalis]
          Length = 434

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 88/243 (36%), Gaps = 26/243 (10%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           ++  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 116 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 175

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 235

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + + D +   
Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMLDLETRI 295

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A   L
Sbjct: 296 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 355

Query: 240 KET 242
           ++ 
Sbjct: 356 RDV 358


>gi|291529189|emb|CBK94775.1| chromosomal replication initiator protein DnaA [Eubacterium rectale
           M104/1]
          Length = 453

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 93/281 (33%), Gaps = 39/281 (13%)

Query: 4   MKEDYSFFVPDK------QKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQAVR 54
           ++ D  F +PD+      + ND P+ +  Q              + D  +V +    A  
Sbjct: 75  IEYDIQFILPDQAQSLKFKNNDTPQLEP-QTPVKGDHSNLNPNYTFDTFVVGNNNRFAHS 133

Query: 55  L---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILID 106
               +   P      + + G  G GK+ L +     I      +      ++   + +I+
Sbjct: 134 ASLAVAESPGEAYNPLYIYGGPGLGKTHLMHSIGHFIIDQNPDTKVLYVTSEEFTNEVIE 193

Query: 107 TRK------------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145
           + +                   ++++DI  +   +    + FH  N++      +++T+ 
Sbjct: 194 SIRNGNSSAMTKFRDKYRTVDVLMIDDIQFIIGKESTQEEFFHTFNTLQTQGKQIILTSD 253

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SR +   +  I  PD +    ++ K        ID  +  YI   +
Sbjct: 254 KPPKEMETLEERIRSRFEWGLMADIGTPDYETRMAILRKKAETDNFDIDDDILNYIASNI 313

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             ++   E  ++K+          IT  +A   L      D
Sbjct: 314 SSNIRELEGALNKLLAFHNLEHTHITMDIAERELSNIITPD 354


>gi|291526546|emb|CBK92133.1| chromosomal replication initiator protein DnaA [Eubacterium rectale
           DSM 17629]
          Length = 453

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 93/281 (33%), Gaps = 39/281 (13%)

Query: 4   MKEDYSFFVPDK------QKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQAVR 54
           ++ D  F +PD+      + ND P+ +  Q              + D  +V +    A  
Sbjct: 75  IEYDIQFILPDQAQSLKFKNNDTPQLEP-QTPVKGDHSNLNPNYTFDTFVVGNNNRFAHS 133

Query: 55  L---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILID 106
               +   P      + + G  G GK+ L +     I      +      ++   + +I+
Sbjct: 134 ASLAVAESPGEAYNPLYIYGGPGLGKTHLMHSIGHFIIDQNPDTKVLYVTSEEFTNEVIE 193

Query: 107 TRK------------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145
           + +                   ++++DI  +   +    + FH  N++      +++T+ 
Sbjct: 194 SIRNGNSSAMTKFRDKYRTVDVLMIDDIQFIIGKESTQEEFFHTFNTLQTQGKQIILTSD 253

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SR +   +  I  PD +    ++ K        ID  +  YI   +
Sbjct: 254 KPPKEMETLEERIRSRFEWGLMADIGTPDYETRMAILRKKAETDNFDIDDDILNYIASNI 313

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             ++   E  ++K+          IT  +A   L      D
Sbjct: 314 SSNIRELEGALNKLLAFHNLEHTHITMDIAERELSNIITPD 354


>gi|310657317|ref|YP_003935038.1| chromosomal replication initiator protein DnaA [Clostridium
           sticklandii DSM 519]
 gi|308824095|emb|CBH20133.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Clostridium sticklandii]
          Length = 440

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 87/241 (36%), Gaps = 34/241 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P++    + + G  G GK+ L +         
Sbjct: 105 NPKYTFDTFVIGNSNRFAHAACVAVAESPAKAYNPLFIYGGVGLGKTHLMHAI----GHY 160

Query: 92  RFSNIAKS--------------LDSILIDTRKP----------VLLEDIDLLDFND---T 124
             SN   S              ++SI  D  +           +L++DI  +   +    
Sbjct: 161 IVSNNKNSKILYLSSETFTNELINSIKDDKNEAFRNKYRNVDVILVDDIQFIAGKERTQE 220

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++H  +  +++++   P         L SR +   +  I  PD +    ++ K
Sbjct: 221 EFFHTFNALHDANKQIIISSDRTPKEIPTLEDRLRSRFEMGLIADIQPPDFETRIAILRK 280

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                   I  ++  +I + ++ ++   E  + ++   +      IT  LA E LK+  Q
Sbjct: 281 KAQVENRDIPNEVMVHIAKNIKSNIRELEGALVRVIAYSDLTKEEITYELACEALKDIFQ 340

Query: 245 C 245
            
Sbjct: 341 S 341


>gi|315928462|gb|EFV07774.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni DFVF1099]
          Length = 440

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +             + + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|148926820|ref|ZP_01810499.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145844545|gb|EDK21652.1| chromosomal replication initiator protein [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 383

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +             + + GP+G GK+ L     + S 
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|301154703|emb|CBW14166.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Haemophilus
           parainfluenzae T3T1]
          Length = 455

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 90/229 (39%), Gaps = 27/229 (11%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWP-SRVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            ++ +   + + A  +   +   P  P +    L G +G GK+ L +     I ++K  +
Sbjct: 126 FENFVEGKSNQLARAVGQKLALAPGEPTANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 185

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A +    ++   +                +L++DI      +    + FHI N+
Sbjct: 186 RVLYIHANNFMQHMVKAMRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 245

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + +    +++T+  +P         L SR        I  PD +    +++K   +  + 
Sbjct: 246 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHHME 305

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +++A +I QR+  ++   E  ++++  +   +G  I      + LK+
Sbjct: 306 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGHIDIDFVRDTLKD 354


>gi|283953664|ref|ZP_06371195.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794705|gb|EFC33443.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 432

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 28/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI------DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
               + +  +V  + + A          D         + + GP+G GK+ L     + S
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIIHKDKLGK-LYNPIFVYGPTGLGKTHLLQAVGNAS 160

Query: 89  RSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLF 127
                  I  + ++ + D                      +L++D+  L   D    + F
Sbjct: 161 LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFF 220

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K   
Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNILKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 281 LNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|257455388|ref|ZP_05620623.1| regulatory inactivation of DnaA Hda protein [Enhydrobacter
           aerosaccus SK60]
 gi|257447350|gb|EEV22358.1| regulatory inactivation of DnaA Hda protein [Enhydrobacter
           aerosaccus SK60]
          Length = 261

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 80/213 (37%), Gaps = 22/213 (10%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLA 81
            EQL  +       S  D     +    V +ID        ++    L G   +GK+ L 
Sbjct: 2   SEQLSLNLNIKQSASISDF----SGPGWVSIIDVVRQMHVGLLTQLYLYGERDTGKTHLL 57

Query: 82  NIWSDKSRSTRFSNIAKSLDSIL-----------IDTRKPVLLEDIDLLDFN---DTQLF 127
           N   +  R    S I  SL  ++           ++    + L+D+D +  +      +F
Sbjct: 58  NAICESFRDIDQSVIYLSLRELINANMDAMVLSSLENTTVIALDDMDAIQGHPEWQEAVF 117

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMF 186
           H+IN   +Y + ++  +R    +    L DL SRL  A   ++    D    ++ +  + 
Sbjct: 118 HLINLSQEYGNKIIFASRLPVKALNFELRDLLSRLARAATFQLPTGSDRLDRQLILESVL 177

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             R    D ++  Y++      +     +++++
Sbjct: 178 RRRHWHFDPRIIDYLLNEGPHRIGAMLAILNEL 210


>gi|58579624|ref|YP_198640.1| chromosomal replication initiation protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|71151811|sp|Q5H715|DNAA_XANOR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|58424218|gb|AAW73255.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 443

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 27/244 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            F+       +  + +   +       A++            ++L G +G GK+ L    
Sbjct: 102 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 161

Query: 85  SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123
            +  R  +             FS + ++L    +D           +L++DI      D 
Sbjct: 162 GNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 221

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++      +++T   +P       P L SRL     V I  PD +    +
Sbjct: 222 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 281

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++
Sbjct: 282 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 341

Query: 242 TQQC 245
             + 
Sbjct: 342 LLRA 345


>gi|313678901|ref|YP_004056640.1| chromosomal replication initiator protein dnaa [Oceanithermus
           profundus DSM 14977]
 gi|313151616|gb|ADR35467.1| chromosomal replication initiator protein DnaA [Oceanithermus
           profundus DSM 14977]
          Length = 442

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + +  +V      A     +    P +    + + G  G GK+ L +     +R  
Sbjct: 106 NPKYTFESFVVGPGNSMAHAAAMAVAEAPGKAYNPLFIYGGVGLGKTHLMHAVGHYARQR 165

Query: 92  -----------------RFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                              S I     +   +  + V   L++D+  +   +    + FH
Sbjct: 166 FPEIRVEYVSTETFTNDLISAIRSDRMNQFRERYRSVDMLLVDDVQFIAGKERTQEEFFH 225

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +L+T+   P         L SR +   +  I  PD +    ++      
Sbjct: 226 TFNTLYEDGKQILLTSDRPPREILTLESRLRSRFEWGLITDIQPPDLETRIAILKMNAER 285

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           R + + +++  Y+ +++  ++   E  + ++   A   G+ IT  +A   L + 
Sbjct: 286 RGVQLSEEVLEYVARQVASNIRELEGALMRLIAYASLSGVTITPKVAQNALADL 339


>gi|327438162|dbj|BAK14527.1| ATPase [Solibacillus silvestris StLB046]
          Length = 447

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ S    A     +    P++      + G  G GK+ L +      +  
Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPFFIYGGVGLGKTHLMHAIGHYVKEH 171

Query: 92  RFSNIAKSL--------------DSILIDTRK------PVLLEDIDLLDFND---TQLFH 128
             +     L              D+  ID R        +L++DI  L   +    + FH
Sbjct: 172 NPTANVVYLSSEKFTNEFINSIRDNKTIDFRNKYRNVDVLLIDDIQFLAGKESTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 232 TFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAPPDLETRIAILRKKAKA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  ++  YI  +++ ++   E  + ++   +    M ++  LAAE LK+
Sbjct: 292 DGLDIPNEVMLYIANQVDTNIRELEGALIRVVAYSSLVNMDVSPELAAEALKD 344


>gi|314922677|gb|EFS86508.1| replication initiator protein DnaA [Propionibacterium acnes
           HL001PA1]
 gi|314982903|gb|EFT26995.1| replication initiator protein DnaA [Propionibacterium acnes
           HL110PA3]
 gi|315091209|gb|EFT63185.1| replication initiator protein DnaA [Propionibacterium acnes
           HL110PA4]
 gi|315094443|gb|EFT66419.1| replication initiator protein DnaA [Propionibacterium acnes
           HL060PA1]
 gi|315105163|gb|EFT77139.1| replication initiator protein DnaA [Propionibacterium acnes
           HL050PA2]
 gi|327328938|gb|EGE70698.1| DNA-directed DNA replication initiator protein [Propionibacterium
           acnes HL103PA1]
          Length = 474

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 197

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQSVDISLAEVVLKDL 371


>gi|84621658|ref|YP_449030.1| chromosomal replication initiation protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188574271|ref|YP_001911200.1| chromosomal replication initiation protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|123725613|sp|Q2P9M1|DNAA_XANOM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735864|sp|B2SUW3|DNAA_XANOP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|84365598|dbj|BAE66756.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188518723|gb|ACD56668.1| chromosomal replication initiator protein DnaA [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 442

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 27/244 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            F+       +  + +   +       A++            ++L G +G GK+ L    
Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160

Query: 85  SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123
            +  R  +             FS + ++L    +D           +L++DI      D 
Sbjct: 161 GNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++      +++T   +P       P L SRL     V I  PD +    +
Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++
Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340

Query: 242 TQQC 245
             + 
Sbjct: 341 LLRA 344


>gi|78187985|ref|YP_378323.1| chromosomal replication initiation protein [Chlorobium
           chlorochromatii CaD3]
 gi|78170184|gb|ABB27280.1| chromosomal replication initiator protein, DnaA [Chlorobium
           chlorochromatii CaD3]
          Length = 492

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 29/235 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90
                 D L+       A     +    P       +++ G  G GK+ +     +  R 
Sbjct: 154 NTKYIFDTLIRGDCNSLAFAAAKAVSQNPGQNAFNPLVIYGGVGLGKTHMMQAVGNSVRE 213

Query: 91  TRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127
            R ++  +  S +   ID    +                  +++DI      +    ++F
Sbjct: 214 NRLTDRVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRSIDVLIIDDIQFFSGKEKTQEEIF 273

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++HQ +  ++++A             L SR        I  PD +  + +I+    
Sbjct: 274 HIFNTLHQSNKQIILSADRPIKDIKGIEDRLISRFNWGLSADIQPPDYETRKAIILSKLQ 333

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241
              + +D  +  +I   +  ++   E  +V  +   +L     I  +     LK+
Sbjct: 334 HNGVTLDDAVIEFIATNVTENVRELEGCIVKLLAAQSLDN-RDIDLAFTKSTLKD 387


>gi|205371912|ref|ZP_03224732.1| chromosomal replication initiation protein [Bacillus coahuilensis
           m4-4]
          Length = 447

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 113 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLEH 172

Query: 92  RFSNIAKSL--------------DSILIDTRK------PVLLEDIDLLDFND---TQLFH 128
             S     L              D+  +D R        +L++DI  L   +    + FH
Sbjct: 173 NPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFH 232

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 233 TFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 292

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I  +   YI  +++ ++   E  + ++   +      I   LA+E LK+
Sbjct: 293 EGLDIPNEAMLYIANQIDTNIRELEGALIRVVAYSSLINKDINADLASEALKD 345


>gi|152977689|ref|YP_001343318.1| chromosomal replication initiation protein [Actinobacillus
           succinogenes 130Z]
 gi|171472899|sp|A6VK86|DNAA_ACTSZ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|150839412|gb|ABR73383.1| chromosomal replication initiator protein DnaA [Actinobacillus
           succinogenes 130Z]
          Length = 455

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 89/230 (38%), Gaps = 27/230 (11%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            ++ +   + + A  +     + P       + L G +G GK+ L +     I ++  ++
Sbjct: 125 FENFVEGKSNQLARAVGIKVANNPGDKTANPLFLYGGTGLGKTHLLHAVGNGILANNPKA 184

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A+      +   K                +L++DI      +    + F+  N+
Sbjct: 185 RVLYIHAERFVQEYVKATKLGAAENFKKFYRNLDALLIDDIQFFAGKELTQEEFFNTFNN 244

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           + + +  +++T+  +P         L SR      V I  P+ +    +++K   +R + 
Sbjct: 245 LFEGEKQIILTSDRYPREIEKIEDRLKSRFSWGLSVAIEPPELETRVAILMKKAEERGVN 304

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +++A +I Q++   +   E  ++++   A   G  IT     + LK+ 
Sbjct: 305 LAEEVAFFIGQKLRTHVRELEGALNRVIANAEFTGKTITIDFVRDTLKDM 354


>gi|329576316|gb|EGG57831.1| replication initiator protein DnaA [Enterococcus faecalis TX1467]
          Length = 447

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + D  ++    + A      +   P      +   G  G GK+ L +    +    
Sbjct: 112 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVN 171

Query: 89  --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128
              +      +++  +  I++                  +L++DI  L   +  L   F 
Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFR 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++  +  +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 232 TFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A   G  IT SLAA+ LK  
Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSL 345


>gi|324999881|ref|ZP_08120993.1| chromosomal replication initiation protein [Pseudonocardia sp. P1]
          Length = 593

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 91/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
               + D  ++ ++      A   +   P+     + + G SG GK+ L +     ++  
Sbjct: 254 NERYTFDTFVIGASNRFSHAAAVAVSEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRL 313

Query: 91  -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L+  +    + FH
Sbjct: 314 FPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDVDVLLVDDIQFLEGKEGTQEEFFH 373

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         + +R +   +  I  P+ +    ++ K  A 
Sbjct: 374 TFNTLHNANKQIVVSSDRPPKRLETLEDRMRTRFEWGLITDIQPPELETRIAILRKKAAQ 433

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ +  ++  +I +R+ER++   E  + ++   A      +   LA  VL++ 
Sbjct: 434 DRLAVPGEVLEFIAERIERNIRELEGALIRVTAFASLNRQAVDTQLAEIVLRDL 487


>gi|198417057|gb|ACH87840.1| DnaA [Francisella noatunensis subsp. noatunensis]
          Length = 433

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           ++  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 115 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 174

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   + ++DI  +   
Sbjct: 175 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIAGK 234

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 235 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 294

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA---- 235
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A    
Sbjct: 295 AILLKKAYDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACS 354

Query: 236 AEVLKETQQ 244
            +V+K  ++
Sbjct: 355 RDVIKIQEK 363


>gi|195973854|gb|ACG63492.1| chromosomal replication initiator protein DnaA [Francisella
           noatunensis]
          Length = 434

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           ++  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 116 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 175

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   + ++DI  +   
Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIAGK 235

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++++    +++T+  +P         L SR      V + +PD +   
Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 295

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA---- 235
            +++K   D    +  + AA+I + +  ++   E  ++++   +       T  +A    
Sbjct: 296 AILLKKAYDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACS 355

Query: 236 AEVLKETQQ 244
            +V+K  ++
Sbjct: 356 RDVIKIQEK 364


>gi|330752007|emb|CBL80520.1| chromosomal replication initiation protein [uncultured Polaribacter
           sp.]
          Length = 475

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 90/259 (34%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  QK       E QL          +  + +   +   A     +  + P      
Sbjct: 125 FVIPGLQKV----KIESQL------NPNYNFVNFVEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            +++ G  G GK+ L++                   S+K       ++  +  +  I   
Sbjct: 175 PLLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRNDFIHFY 234

Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++D+  L          FHI N +HQ    +++T+   PV        L SR 
Sbjct: 235 QMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     ++  PD +    ++        + +  ++  YI + ++ ++   E ++  M   
Sbjct: 295 KWGLSAELQAPDYETRISILDNKLFRDGVEMPSEIVEYIAKNIKSNVRELEGVIISMIAQ 354

Query: 223 ALSRGMGITRSLAAEVLKE 241
           A       +  LA +++ +
Sbjct: 355 ASFNRREFSLELAKQIVDK 373


>gi|172039681|ref|YP_001799395.1| chromosomal replication initiation protein [Corynebacterium
           urealyticum DSM 7109]
 gi|171850985|emb|CAQ03961.1| chromosomal replication initiator protein [Corynebacterium
           urealyticum DSM 7109]
          Length = 586

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 85/236 (36%), Gaps = 26/236 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTR- 92
             + +  ++  + + A     +    P+R    + + G SG GK+ L +     ++  + 
Sbjct: 250 KYTFESFVIGGSNQFAHAACRAVAEAPARAYNPLFIWGESGLGKTHLLHAIGHYAKELQP 309

Query: 93  ----------------FSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHII 130
                            ++IA           +    ++++DI  L   +    + FH  
Sbjct: 310 DMRVRYVSSEELTNDFINSIANDRREEFKREYRNLDMLIVDDIQFLQGKESTQEEFFHTF 369

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++HQ +  +++++   P         L +R +   +  +  PD +    ++ +  A   
Sbjct: 370 NALHQANKQIVLSSDRPPRQLTTLEDRLRTRFEGGLITDVQTPDLETRMAILSRKAAAEG 429

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             + + +   I  R E S+   E  + ++          IT+  A   L++    D
Sbjct: 430 TTLPEDVLELIASRYETSIRELEGALIRVTAYCSLGKEPITKQAAEIALRDIMPVD 485


>gi|319945018|ref|ZP_08019280.1| DNA-directed DNA replication initiator protein [Lautropia mirabilis
           ATCC 51599]
 gi|319741588|gb|EFV94013.1| DNA-directed DNA replication initiator protein [Lautropia mirabilis
           ATCC 51599]
          Length = 592

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
             G++    +   A + A          P      + + G  G GK+ L       I   
Sbjct: 256 NPGLTFAAFVNGKANDLARAAALQVADRPGSAYNPLFIHGGVGLGKTHLMQAVGNAIQQR 315

Query: 87  KSRSTR--------FSNIAKSLDSILID-------TRKPVLLEDIDLLD---FNDTQLFH 128
           +SR+            ++ +++    ID       +   +L++DI  L     +  + FH
Sbjct: 316 ESRAIIRYISSNQFVQDLIQAIRRNAIDRFKHYYQSLDVLLIDDIQFLSDKQRSQEEFFH 375

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           +  ++      +++T  T+P         L SRL +  +V I  P+ +    ++ +    
Sbjct: 376 VFETMTINQRQIVITCDTYPKELKGIDDRLISRLNSGLIVAIEPPELEMRVAILQRKAEQ 435

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +   +A +I + + R++   E  + +  + A  R   +T  L  E LK+ 
Sbjct: 436 ARIRLPDDVAYFIAKNIRRNVRELEGALQRAIHYASFRSSPLTLELVKEALKDL 489


>gi|312878753|ref|ZP_07738553.1| chromosomal replication initiator protein DnaA [Aminomonas
           paucivorans DSM 12260]
 gi|310782044|gb|EFQ22442.1| chromosomal replication initiator protein DnaA [Aminomonas
           paucivorans DSM 12260]
          Length = 439

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 88/256 (34%), Gaps = 30/256 (11%)

Query: 13  PDKQKNDQPKNKEEQLFFSF-PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68
           P++QK         QL             D  +V  +   A     +    P      + 
Sbjct: 86  PNEQKRA---EAAAQLVVPKNGLNPNYVFDTFVVGKSNRLAHAASLASAESPGVAYNPLF 142

Query: 69  LVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDTR--------------- 108
           + G  G GK+ L +            +      ++   + LI +                
Sbjct: 143 IWGGVGLGKTHLMHAIGHYVSENLPGAKVVYVSSEKFTNELISSIQNNRTQDFKAKYRSV 202

Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI  L   +    + FH  NS+H     +++++   P         L SR +  
Sbjct: 203 DVLLIDDIQFLADKESTQEEFFHTFNSLHDAKKQVVISSDRPPKDIQRVEERLVSRFEWG 262

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            V  I  PD +    ++ K    R   + + +  ++ Q +  ++   E  ++++   +  
Sbjct: 263 LVTDIQPPDLETRVAILQKKAELRGYVVPEDVIFFLAQNIPSNIRELEGALNRVVACSEL 322

Query: 226 RGMGITRSLAAEVLKE 241
            G  I+   AAE LK+
Sbjct: 323 NGEPISTERAAEWLKD 338


>gi|320105247|ref|YP_004180837.1| chromosomal replication initiator protein DnaA [Terriglobus
           saanensis SP1PR4]
 gi|319923768|gb|ADV80843.1| chromosomal replication initiator protein DnaA [Terriglobus
           saanensis SP1PR4]
          Length = 478

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 89/246 (36%), Gaps = 30/246 (12%)

Query: 26  EQLFFSFPRCLGIS----RDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKS 78
           EQ  F +     ++     D+ ++ S  + A     +    PS+    + L G  G GK+
Sbjct: 132 EQARFDWNTASQLNARYLFDNFVIGSGNQFAHAASQAVAERPSKAYNPLFLYGGVGMGKT 191

Query: 79  CLANIWSDK------SRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDL 118
            L      +        S  + +  K  + ++   R                +L++DI  
Sbjct: 192 HLMQAIGHEVKRRNPHASISYVSGEKFTNEMINSVRYDKMTTFRDKFRTVDVLLIDDIQF 251

Query: 119 LDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           L   +    + FH  N++H+    +++ +   P         L SR +   +  I  PD 
Sbjct: 252 LAGKERTQEEFFHTFNALHESMKQIVIASDRPPKELADFEDRLRSRFEWGLIADIQPPDL 311

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           +    ++ K     Q  +   +A ++   +  ++   E  + ++       G+ IT   A
Sbjct: 312 ETKVAILQKKAESEQTVLPIDVALFVASNVRTNVRELEGALVRLLAWCSLHGVEITLPTA 371

Query: 236 AEVLKE 241
            + LK+
Sbjct: 372 QQCLKQ 377


>gi|88813024|ref|ZP_01128266.1| chromosomal replication initiator protein DnaA [Nitrococcus mobilis
           Nb-231]
 gi|88789657|gb|EAR20782.1| chromosomal replication initiator protein DnaA [Nitrococcus mobilis
           Nb-231]
          Length = 432

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 77/235 (32%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
               + D  +   + + A      L+++ P      + + G  G GK+ L +   +    
Sbjct: 98  NPNFTFDTFVEGKSNQLARAASSQLVEN-PGGAYNPLFIYGGVGLGKTHLMHAIGNALLQ 156

Query: 91  TRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQLF 127
                    L S                            +L++DI      +    + F
Sbjct: 157 RLPDAEVLYLHSERFVGDMVKALQHNAINEFKRYYRGVNALLIDDIQFFAGKERSQEEFF 216

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    ++M+   +P         L SR      V I  P+ +    +++    
Sbjct: 217 HTFNALLEGQQQVVMSCDRYPKEVQGLEERLKSRFGWGLTVAIEPPEFETRAAILMTKAN 276

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              I +  ++A +I +R+  ++   E  + ++   +   G  IT       L++ 
Sbjct: 277 LEGIELPHEVAFFIAKRIRSNVRELEGALRRVIANSYFTGERITVEFTKGALRDL 331


>gi|315931305|gb|EFV10274.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 440

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 28/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI------DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
               + +  +V  + + A          D         + + GP+G GK+ L     + S
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIIHKDKLGK-LYNPIFVYGPTGLGKTHLLQAVGNAS 160

Query: 89  RSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLF 127
                  I  + ++ + D                      +L++D+  L   D    + F
Sbjct: 161 LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFF 220

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K   
Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 281 FNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|256821229|ref|YP_003145192.1| chromosomal replication initiator protein DnaA [Kangiella koreensis
           DSM 16069]
 gi|256794768|gb|ACV25424.1| chromosomal replication initiator protein DnaA [Kangiella koreensis
           DSM 16069]
          Length = 461

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 77/234 (32%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLAN--------- 82
                    +   + + A          P      + + G  G GK+ L +         
Sbjct: 127 NPKFLFSSFVEGKSNQLARAAAQQVVENPGEAYNPLFIYGGVGLGKTHLMHSVGNSILDK 186

Query: 83  --------IWSDKSRSTRFSNIAKSLDSIL---IDTRKPVLLEDIDLLD---FNDTQLFH 128
                   + S++  +     +             +   +L++DI           + FH
Sbjct: 187 NPNAHIVYLHSERFMANMVKALQTGTMDKFKNFYRSVDALLIDDIQFFANKGRTQEEFFH 246

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T   FP         L SR      V +  P+ +    +++     
Sbjct: 247 TFNNLIEKNKQVIITCDRFPKEVEGLEERLKSRFGWGLTVAVEPPELETRVAILMSKAQS 306

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +  ++A +I +R+  ++   E  + ++   A   G  IT     + LK+ 
Sbjct: 307 SKIELPNEVAFFIAKRIRSNVRELEGALKRVIANAQFTGRAITLDFVKDALKDL 360


>gi|86152361|ref|ZP_01070571.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|315123617|ref|YP_004065621.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85840658|gb|EAQ57910.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|315017339|gb|ADT65432.1| chromosomal replication initiator protein DnaA [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 440

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 28/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI------DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
               + +  +V  + + A          D         + + GP+G GK+ L     + S
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIIHKDKLGK-LYNPIFVYGPTGLGKTHLLQAVGNAS 160

Query: 89  RSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLF 127
                  I  + ++ + D                      +L++D+  L   D    + F
Sbjct: 161 LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFF 220

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K   
Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 281 FNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334


>gi|313885387|ref|ZP_07819137.1| chromosomal replication initiator protein DnaA [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619117|gb|EFR30556.1| chromosomal replication initiator protein DnaA [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 449

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 91/234 (38%), Gaps = 28/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
               + ++ ++    + A    + +++S P       ++ G  G GK+ L     ++   
Sbjct: 114 NPNYTFENFVIGEDNKMASVAALAVVES-PGKTYNPFLIYGGVGLGKTHLMQAIGNEIKH 172

Query: 88  --SRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLL---DFNDTQLF 127
               +      ++S  +  I +                  +L++DI  L   D    + F
Sbjct: 173 RNPGAKIKYATSESFVNDFITSIQNGSQDHFRQMYREIDILLIDDIQFLSNKDKTQEEFF 232

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N+++     +++T+   P +       L SR K      I+ PD +    ++ K  +
Sbjct: 233 HTFNALYNNGKQIVLTSDRLPNNITNLEERLISRFKWGLSTDITPPDLETRIAILRKKAS 292

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              + I+ +   YI   ++ ++   E  + ++   A  +G+ IT  LAAE LK 
Sbjct: 293 TDNLDINSETLTYIASHIDSNIRELEGALVRVIAYAAIKGLDITTDLAAEALKN 346


>gi|91203534|emb|CAJ71187.1| similar to chromosomal replication initiator protein DnaA
           [Candidatus Kuenenia stuttgartiensis]
          Length = 472

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 25/234 (10%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW--------- 84
             + ++ +V +    A      +   P +    + + G SG GK+ L +           
Sbjct: 142 RYTFENFVVAAYNRMAHAAAISVAGSPGYAYNPLFIHGASGLGKTHLMHAINNFILQQGR 201

Query: 85  -------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDI---DLLDFNDTQLFHIIN 131
                   +   +   S I  +         + V   L++DI   +    +  + FH  N
Sbjct: 202 LKTFYLSCEHFVNHYISAIQSNNMEAFRKFYRNVDVLLMDDIQFFENSYGSREEFFHTFN 261

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +++     +++T+   P S       L SR K   V  IS P  +    ++ K  A   I
Sbjct: 262 ALYNDGKQIVITSNYPPESIAYMEDRLVSRFKWGLVCGISTPSLETRAAIVEKRAAAWNI 321

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +  + A Y+ + +  ++   E  + ++ N A +    ++     +V +E    
Sbjct: 322 KVSHESAVYLAENIPGNIRELEGAIARLSNEAKATNNAVSFDFIRKVSREISGS 375


>gi|289207188|ref|YP_003459254.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio
           sp. K90mix]
 gi|288942819|gb|ADC70518.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio
           sp. K90mix]
          Length = 455

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD----- 86
               + D  +   + + A          P      + + G  G GK+ L +   +     
Sbjct: 121 NPAFTFDTFVEGKSNQLARAASLQVAENPGVAYNPLFIYGGVGLGKTHLMHAIGNSILSR 180

Query: 87  --------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128
                          +++ K+L    ID       T   +L++DI      +    + FH
Sbjct: 181 LPEGRIIYLHSERFVADMIKALQHNAIDDFKQHYRTADALLIDDIQFFANKERSQEEFFH 240

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T+  +P         L SR      + I  P+ +    ++ +    
Sbjct: 241 TFNALLEGQQQIILTSDRYPKEVEGLEERLKSRFGWGLTIAIEPPELETRVAILQRKAEQ 300

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I +  ++A ++ +R+  ++   E  + ++   A   G  IT   A E L++ 
Sbjct: 301 AGIELPTEVAFFMGKRIRSNIRELEGSLRRVIANAHFTGKPITLDFAKEALRDL 354


>gi|57233687|ref|YP_180756.1| chromosomal replication initiator protein DnaA [Dehalococcoides
           ethenogenes 195]
 gi|57224135|gb|AAW39192.1| chromosomal replication initiator protein DnaA [Dehalococcoides
           ethenogenes 195]
          Length = 445

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 84/259 (32%), Gaps = 26/259 (10%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
            +      + +   P+   E+    F      + +  +V S    A     +    P + 
Sbjct: 79  GFQLVQSAQVQAAAPQTAREKTVSPF--NPRYTFESFIVGSCNRLAHAASLAATQNPGKS 136

Query: 67  ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN- 122
              + +   +G GK+ L       +   R   +  S +    D    +     +      
Sbjct: 137 YNPLYIYAAAGLGKTHLLQAIGHLANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRARY 196

Query: 123 --------------------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                               +  LFH  N +H  +  ++++A + P S       L SR 
Sbjct: 197 RDVDLLLLDDVQFIGGKEQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRF 256

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    ++I  PD+    +++          ++     Y+ Q ++ ++   E  ++++   
Sbjct: 257 EWGLTIEIEPPDEKTRLELLQLKAEQSGTELNMDTLEYLAQEVKHNIRELEGSLNRVLAY 316

Query: 223 ALSRGMGITRSLAAEVLKE 241
           A      IT  LAA  L +
Sbjct: 317 ARLLRATITPDLAARALSD 335


>gi|163790919|ref|ZP_02185342.1| chromosomal replication initiator protein DnaA [Carnobacterium sp.
           AT7]
 gi|159873761|gb|EDP67842.1| chromosomal replication initiator protein DnaA [Carnobacterium sp.
           AT7]
          Length = 358

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 81/234 (34%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + D  ++    + A      +   P      +   G  G GK+ L +    +    
Sbjct: 24  NTKYTFDTFVIGKGNQMAHAAALVVAEEPGTIYNPLFFYGGVGLGKTHLMHAIGHQMLLL 83

Query: 88  ---SRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLD---FNDTQLFH 128
              +R    S+   + D I                +   +L++DI           + FH
Sbjct: 84  NPDARVKYVSSETFANDFINSIQNKTQEKFRNEYRSVDLLLVDDIQFFADKEGTQEEFFH 143

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 144 TFNALYDDRKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRIAILRKKANA 203

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A      IT SLAA+ LK  
Sbjct: 204 ERLEIPGDTLSYIAGQIDSNIRELEGALVRVQAYAAIESRDITTSLAADALKSM 257


>gi|225575691|ref|ZP_03784301.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037095|gb|EEG47341.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM
           10507]
          Length = 449

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 29/241 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               +    +V S  + A      +   P      + + G  G GK+ L +     I   
Sbjct: 109 NPRYTFGTFVVGSNNKFAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMHSIARFILEH 168

Query: 87  KSRSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLL---DFNDTQ 125
              S      ++   + LI+  +                   +L++D+  +   D    +
Sbjct: 169 NPDSKVLYVTSEEFTNELIEAIRNGNNTAMTQFRDKYRNIDVLLVDDVQFIIGKDATQEE 228

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+H     +++++   P    +    + SR +   +  IS PD +    ++ K 
Sbjct: 229 FFHTFNSLHSAKKQIIISSDKPPKDMEILEDRIRSRFEWGLIADISSPDYETRVAILKKK 288

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                  I++ +  YI   ++ ++   E  ++K+   A      +T  LA +VLK+    
Sbjct: 289 EEMDGYDINEDVIKYIATNIKSNIRELEGSLNKVMAFANLEKREVTVELAEQVLKDIISP 348

Query: 246 D 246
           D
Sbjct: 349 D 349


>gi|313681131|ref|YP_004058869.1| chromosomal replication initiator protein dnaa [Sulfuricurvum
           kujiense DSM 16994]
 gi|313153991|gb|ADR32669.1| chromosomal replication initiator protein DnaA [Sulfuricurvum
           kujiense DSM 16994]
          Length = 442

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 90/234 (38%), Gaps = 24/234 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN----IWSDK 87
               +  + +V  +   A     +    P      + + G  G GK+ L      +   +
Sbjct: 106 NPSFTFQNFVVGDSNNFAFIAAKNVSEKPGVVYNPLFIYGGVGLGKTHLMQSVGNVMLSQ 165

Query: 88  SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFN---DTQLFHII 130
            ++  ++++ + L+                       +L++DI  L        + FH  
Sbjct: 166 GKTVIYTSVEQFLNDFTRHLSNRTMDRFKDKYRKCDLLLIDDIQFLSNKNQIQEEFFHTF 225

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           +++   +  +++T+   P   G     L SR ++  V  I  P+ +   ++I K     +
Sbjct: 226 DALRNENKQIIITSDKPPKKIGGLEERLKSRFESGLVADIQPPELETKIEIIKKKCEINR 285

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + +D+++  Y+   +E +    E ++ K++  +   G+ IT   A  VLKE   
Sbjct: 286 VKLDREVINYVATIIENNTREIEGILSKLNAYSQLMGVDITIEFARNVLKEQMA 339


>gi|269977741|ref|ZP_06184701.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris
           28-1]
 gi|269934045|gb|EEZ90619.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris
           28-1]
          Length = 516

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 92/250 (36%), Gaps = 28/250 (11%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSG 76
            P     Q+  +       + +  ++ S+      A   +   P+     + + G SG G
Sbjct: 159 APIPASMQIDRNTGLNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAYNPLFIYGGSGLG 218

Query: 77  KSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDI 116
           K+ L +                   S++  +   + IA      L    + V   L++DI
Sbjct: 219 KTHLLHAIGNYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREVDFLLIDDI 278

Query: 117 DLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             L   +  L   FH  N++H     +++T+   P         + SRL+   +  I  P
Sbjct: 279 QFLQGKEQTLEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWGLLTDIQPP 338

Query: 174 DDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGIT 231
           + +    ++ +  A   +   D  +  YI   +  ++   E  + ++    ALS G  ++
Sbjct: 339 NLETRIAILRRKSAQENLQGYDDAVLEYIASNISSNIRELEGALLRVTAYAALSGGGSVS 398

Query: 232 RSLAAEVLKE 241
              A E+L++
Sbjct: 399 LDTAKEILRD 408


>gi|206889361|ref|YP_002247869.1| chromosomal replication initiator protein DnaA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|259645263|sp|B5YGT9|DNAA_THEYD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|206741299|gb|ACI20356.1| chromosomal replication initiator protein DnaA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 438

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCL---------- 80
               + D  +V  + + A     R+ ++ P +    + + G  G GK+ L          
Sbjct: 103 NPKYTFDTFVVGPSNQFAHAASFRVAEN-PGFAYNPLFIYGGVGLGKTHLITAIGNYILD 161

Query: 81  -------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLF 127
                    I S++      S I         +  + V   L++DI  +   D    + F
Sbjct: 162 KKPEMNVCYISSEQFTGEFVSAIRHEKMPEFRNKYRTVDVFLVDDIQFIAGKDSTQEEFF 221

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N ++     +++++   P+        L SR     +  I  P+ +    ++ K   
Sbjct: 222 HTFNELYSKQKQIVISSDRPPMEISDITDRLRSRFGMGLIADIQPPEIETRLAILYKKAD 281

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              + + + +A +I  R++ ++   E  + K+        + I+  +A  VL++ 
Sbjct: 282 MEGVKLPEDVAYFIASRVKSNVRELEGSLIKLCAYTSLTKVPISMDVAKYVLRDL 336


>gi|300087140|ref|YP_003757662.1| chromosomal replication initiator protein DnaA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526873|gb|ADJ25341.1| chromosomal replication initiator protein DnaA [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 463

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 88/254 (34%), Gaps = 30/254 (11%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSW-PSRVVIL 69
           P K      KN++    F+       + +  +V ++   A     S    S      + +
Sbjct: 110 PAKTDRQPVKNRDGHRCFN----PKYNFNSFIVGNSNRMAHAAALSAAHQSGQAYNPLFI 165

Query: 70  VGPSGSGKSCLANIWSDKSR---------------STRFSNIAKSLDSILIDTRKPV--- 111
            G SG GK+ L       +                S   + + +       +  + V   
Sbjct: 166 HGSSGLGKTHLLQAIGQTAGDEGRRVRYVSGEQFTSEFVAALKERRADEFRELYRNVDVL 225

Query: 112 LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATV 167
           L++DI  +      +   FH  N +H     ++++A + P      L D L SR +    
Sbjct: 226 LIDDIQFIAGKAQTEESFFHTFNELHNNGKQIVLSADSPPREIS-QLEDRLRSRFEWGLT 284

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            +I  PD+     ++     +    I   +  Y+   + R++   E  ++++   +    
Sbjct: 285 TEIFPPDEKTRLSILKTRAEETGAEITPDVLDYLASEVIRNIRELEGNLNRVLAYSRLLR 344

Query: 228 MGITRSLAAEVLKE 241
             IT  +A + LK 
Sbjct: 345 SAITPEVARQALKN 358


>gi|213622042|ref|ZP_03374825.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 309

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 23/206 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID 106
           P      + L G +G GK+ L +     I + K  +            ++ K+L +  I+
Sbjct: 3   PGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIE 62

Query: 107 -------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                  +   +L++DI      +    + FH  N++ + +  +++T+  +P        
Sbjct: 63  EFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVED 122

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR      V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  +
Sbjct: 123 RLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGAL 182

Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242
           +++   A   G  IT     E L++ 
Sbjct: 183 NRVIANANFTGRAITIDFVREALRDL 208


>gi|194335183|ref|YP_002016977.1| chromosomal replication initiator protein DnaA [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307660|gb|ACF42360.1| chromosomal replication initiator protein DnaA [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 487

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 79/235 (33%), Gaps = 29/235 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90
               + D L+       A     S    P       +++ G  G GK+ +     +  R 
Sbjct: 149 NSKYTFDTLIRGDCNSLAFAASKSVAQSPGQNAFNPLVIYGGVGLGKTHMMQAIGNSVRE 208

Query: 91  TRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127
            R S   +  S +   ID    +                  +++DI      +    ++F
Sbjct: 209 NRLSERVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRSIDVLIIDDIQFFSGKEKTQEEIF 268

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++HQ +  ++++A             L SR        I  PD +  + +I+    
Sbjct: 269 HIFNTLHQSNKQIILSADRPIKDIKGIEDRLISRFNWGLSADIQPPDYETRKAIILSKLH 328

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241
              + +D+ +  +I   +  ++   E  +V  +   +L     I        LK+
Sbjct: 329 QSGVNLDETVIEFIATNVTENVRELEGCIVKLLAAQSLDN-REIDLQFTKSTLKD 382


>gi|255264264|ref|ZP_05343606.1| chromosomal replication initiator protein DnaA [Thalassiobium sp.
           R2A62]
 gi|255106599|gb|EET49273.1| chromosomal replication initiator protein DnaA [Thalassiobium sp.
           R2A62]
          Length = 447

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P     + D  +V    E A                 + L G  G GK+ L +  + +  
Sbjct: 106 PLDARFTFDRFVVGKPNELAFAAAKRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELT 165

Query: 90  STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF---NDTQL 126
           + R       L +                     +  +   ++++D+  +        + 
Sbjct: 166 ARRSDLNVLYLSAEQFMYRFVTALRENSMMDFKHMFRSVDILMVDDVQFIAGKGSTQEEF 225

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL++  VV +   D +    ++    
Sbjct: 226 FHTFNALVDQNKQIIISADRAPGEIKDLEERIKSRLQSGLVVDLHPTDYELRLGILQSKV 285

Query: 187 ADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                    + I   +  ++  R+  ++   E  + ++   A   G  IT  LA + L +
Sbjct: 286 RAYREQYAGLVIADGVLEFLAHRISTNVRVLEGALTRLYAFASLVGKEITLELAQDCLSD 345

Query: 242 TQQC 245
             + 
Sbjct: 346 ILRA 349


>gi|288939765|ref|YP_003442005.1| chromosomal replication initiator protein DnaA [Allochromatium
           vinosum DSM 180]
 gi|288895137|gb|ADC60973.1| chromosomal replication initiator protein DnaA [Allochromatium
           vinosum DSM 180]
          Length = 453

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 88/263 (33%), Gaps = 33/263 (12%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLG-------ISRDDLLVHSAIEQAVRL---IDSWPSW 62
           P K K  +  +K   +                 + D  +   + + A      I   P  
Sbjct: 90  PAKGKGARAGSKASVIDSDLATRRAAANLNADFNFDTFVEGKSNQLARAASIQIARNPGG 149

Query: 63  PSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT---------- 107
               + + G  G GK+ L +     I +    +      ++   + +I            
Sbjct: 150 TYNPLFIYGGVGLGKTHLMHAVGNVILASNPSARVVYLHSERFVAEMIKALQHNRIEDFK 209

Query: 108 -----RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
                   +L++D+      +    + FH  N++ +    +++++  FP         L 
Sbjct: 210 KTYRSVNALLIDDVQFFAGKERSQEEFFHTFNALLESGQQIVLSSDRFPKEVTGLEERLR 269

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SR      V I  PD +    ++        + + + +A ++ +R+  ++   E  + ++
Sbjct: 270 SRFGWGLTVAIDPPDLETSVAILHCKATQLGVELPEDVAFFVGRRIRSNIRELEGALRRL 329

Query: 220 DNLALSRGMGITRSLAAEVLKET 242
              A   G  IT   A + L++ 
Sbjct: 330 VANAHFTGKPITLEFAKQALRDV 352


>gi|167031024|ref|YP_001666255.1| chromosomal replication initiation protein [Pseudomonas putida
           GB-1]
 gi|189044600|sp|B0KEU9|DNAA_PSEPG RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166857512|gb|ABY95919.1| chromosomal replication initiator protein DnaA [Pseudomonas putida
           GB-1]
          Length = 510

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + D  +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 179 FTFDTFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 236

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 237 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 294

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 295 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 354

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 355 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 409


>gi|88606838|ref|YP_505074.1| chromosomal replication initiation protein [Anaplasma
           phagocytophilum HZ]
 gi|88597901|gb|ABD43371.1| chromosomal replication initiator protein DnaA [Anaplasma
           phagocytophilum HZ]
          Length = 459

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 87/242 (35%), Gaps = 28/242 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A             +     + L G  G GK+ L +  +  
Sbjct: 122 PLDPRFTFDNFVVGKPNELAFAAARRVAESSEPIPGSNPLFLYGGVGLGKTHLMHAIAWY 181

Query: 86  --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124
                          +    ++    +S D +L   +      ++++D+  +   D    
Sbjct: 182 ALGSPRKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQE 241

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++      L+++A   P         + SRL    V  I+    +    ++  
Sbjct: 242 EFFHTFNALIDQSKQLVISADRSPSDLDGVEDRIKSRLGWGLVADINETTFELRLGILQL 301

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 I +  ++  ++ + ++ ++   E  ++K+   +   G  +T  LA+++L +  +
Sbjct: 302 KVEKMGIHVPDEVLEFLAKNIKSNIRELEGALNKVVAHSSLVGSSVTVELASDILSDLLR 361

Query: 245 CD 246
            +
Sbjct: 362 AN 363


>gi|81251104|gb|ABB69899.1| DNA replication initiator protein [Nitrosomonas sp. OZK11]
          Length = 458

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 88/247 (35%), Gaps = 32/247 (12%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKS 78
           KN   QL        G + D  +   A + A      +   P      + + G  G GK+
Sbjct: 117 KNNPSQL------NPGFTFDAFVTGKANQLARAGAIQVAERPGIAYNPLFIYGGVGLGKT 170

Query: 79  CLANIWS------DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDL 118
            L           D     R+ +  K +  ++                +   +L++D+  
Sbjct: 171 HLMQAIGNCVLDLDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQF 230

Query: 119 LDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
                    + F+  N++ +    +++T+  +P         L SR      V I  P+ 
Sbjct: 231 FSGKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPEL 290

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           +    +++K     +I +D+  A +I + +  ++   E  + ++   +   G  IT  LA
Sbjct: 291 EMRVAILLKKAHAEKIALDENTAFFIAKYIRSNVRELEGALKRILAFSRFTGHPITLDLA 350

Query: 236 AEVLKET 242
            E LK+ 
Sbjct: 351 KEALKDL 357


>gi|325922759|ref|ZP_08184493.1| chromosomal replication initiator protein DnaA [Xanthomonas
           gardneri ATCC 19865]
 gi|325546755|gb|EGD17875.1| chromosomal replication initiator protein DnaA [Xanthomonas
           gardneri ATCC 19865]
          Length = 442

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 27/238 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
               +  + +   +       A++            ++L G +G GK+ L     +  R 
Sbjct: 107 DSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAAGNALRQ 166

Query: 91  TR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127
                          FS + ++L    +D           +L++DI      D    + F
Sbjct: 167 ANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDRTQEEFF 226

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++      +++T   +P       P L SRL     V I  PD +    +++    
Sbjct: 227 HTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKAR 286

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++  + 
Sbjct: 287 ERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRDLLRA 344


>gi|227876540|ref|ZP_03994651.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris
           ATCC 35243]
 gi|306817501|ref|ZP_07451245.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris
           ATCC 35239]
 gi|227842854|gb|EEJ53052.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris
           ATCC 35243]
 gi|304649725|gb|EFM47006.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris
           ATCC 35239]
          Length = 533

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 92/250 (36%), Gaps = 28/250 (11%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSG 76
            P     Q+  +       + +  ++ S+      A   +   P+     + + G SG G
Sbjct: 176 APIPASMQIDRNTGLNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAYNPLFIYGGSGLG 235

Query: 77  KSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDI 116
           K+ L +                   S++  +   + IA      L    + V   L++DI
Sbjct: 236 KTHLLHAIGNYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREVDFLLIDDI 295

Query: 117 DLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             L   +  L   FH  N++H     +++T+   P         + SRL+   +  I  P
Sbjct: 296 QFLQGKEQTLEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWGLLTDIQPP 355

Query: 174 DDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGIT 231
           + +    ++ +  A   +   D  +  YI   +  ++   E  + ++    ALS G  ++
Sbjct: 356 NLETRIAILRRKSAQENLQGYDDAVLEYIASNISSNIRELEGALLRVTAYAALSGGGSVS 415

Query: 232 RSLAAEVLKE 241
              A E+L++
Sbjct: 416 LDTAKEILRD 425


>gi|116491819|ref|YP_803554.1| chromosomal replication initiation protein [Pediococcus pentosaceus
           ATCC 25745]
 gi|122266717|sp|Q03I60|DNAA_PEDPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|116101969|gb|ABJ67112.1| DNA replication ATPase initiation [Pediococcus pentosaceus ATCC
           25745]
          Length = 446

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 90/253 (35%), Gaps = 32/253 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGP 72
           +K  +   ++ QL          + D  ++ S  + A     +    P      +   G 
Sbjct: 98  KKETKASTEDTQL------NSRYTFDTFVIGSGNQMAHAAAMAVSDEPGVLYNPLFFYGG 151

Query: 73  SGSGKSCLANIWSDK-------SRSTRFSNIAKSLDSILIDTRK-------------PVL 112
            G GK+ L +    +       +R    ++ A + D I    +               +L
Sbjct: 152 VGLGKTHLMHAIGHQLLENDPKTRVKYVTSEAFTNDFINSIQKNKTEEFHEKYRNVDLLL 211

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++D+      +    + FH   +++     +++T+   P         L SR K    + 
Sbjct: 212 VDDVQFFADKEATQEEFFHTFEALYNAQKQIVLTSDRLPNEIPKLQERLVSRFKWGLSID 271

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I+ P+ +    ++ +      + I  +   YI  R++ ++   E  + ++   A  +   
Sbjct: 272 ITPPNLETRIAILREKAQADNVEIPDETLEYIANRIDSNIRELEGAMARIQAYAKLQNAA 331

Query: 230 ITRSLAAEVLKET 242
           IT  LA++ L+  
Sbjct: 332 ITTDLASDALRSL 344


>gi|92112137|ref|YP_572065.1| chromosomal replication initiation protein [Chromohalobacter
           salexigens DSM 3043]
 gi|123084264|sp|Q1R1P2|DNAA_CHRSD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|91795227|gb|ABE57366.1| chromosomal replication initiator protein DnaA [Chromohalobacter
           salexigens DSM 3043]
          Length = 495

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + +  +   + + A          P      + L G  G GK+ L +   +     
Sbjct: 161 NPNFTFETFVEGKSNQLARAASRQVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQ 220

Query: 92  RFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQLFH 128
           R +     L S                        +   +L++DI      +    + FH
Sbjct: 221 RENAKVVYLHSERFVADMVKALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFH 280

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T+  +P         L SR      V I  P+ +    +++K    
Sbjct: 281 TFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLTVAIEPPELETRVAILMKKADQ 340

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ +    A +I Q++  ++   E  + K+   +   G  IT+    E LK+ 
Sbjct: 341 AKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLKDL 394


>gi|166709896|ref|ZP_02241103.1| chromosomal replication initiation protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 442

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 27/244 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            F+       +  + +   +       A++            ++L G +G GK+ L    
Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160

Query: 85  SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123
            +  R  +             FS + ++L    +D           +L++DI      D 
Sbjct: 161 GNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++      +++T   +P       P L SRL     V I  PD +    +
Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++
Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRLITVEFAQETLRD 340

Query: 242 TQQC 245
             + 
Sbjct: 341 LLRA 344


>gi|312128810|ref|YP_003996150.1| chromosomal replication initiator protein dnaa [Leadbetterella
           byssophila DSM 17132]
 gi|311905356|gb|ADQ15797.1| chromosomal replication initiator protein DnaA [Leadbetterella
           byssophila DSM 17132]
          Length = 465

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 94/270 (34%), Gaps = 37/270 (13%)

Query: 13  PDKQKNDQPKNKEE-----QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--- 64
           P +     PKN  E      + F          ++ +  S    A     +    PS   
Sbjct: 102 PKEDSRVIPKNPFEIKTSSDIIFDSQLNKNYRFENYVEGSCNRLARAASVAVAQKPSVTA 161

Query: 65  -RVVILVGPSGSGKSCLANIW------------------SDKSRSTRFSNIAKSLDSILI 105
              +++ G  G GK+ L                      S+K  S   + I  +     +
Sbjct: 162 FNPLMIYGDVGLGKTHLVQAIGNYIEDQPGNNKLVLYVSSEKFTSQFINAIRDNSLQDFM 221

Query: 106 DTR---KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
           +       ++++DI  L   +      FHI N +HQ    ++MT+   P         L 
Sbjct: 222 NFYMMVDVLIIDDIQFLAGKEKTQETFFHIFNHLHQSGKQIVMTSDRPPRELSGMEDRLL 281

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SR K      I +PD +    +I    A  +  +D ++  Y+   ++ ++   E +++ +
Sbjct: 282 SRFKWGLTTDIQIPDLETRMAIIQNKLATEKAEMDMEVVEYLANCVDSNVRELEGVLNSL 341

Query: 220 DNLALSRGMGITRSLA----AEVLKETQQC 245
              +      I   LA      +++E+Q+ 
Sbjct: 342 IVDSALLQRKIDIELAKYRIKSLVEESQKA 371


>gi|307699978|ref|ZP_07637029.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris
           FB024-16]
 gi|307615016|gb|EFN94234.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris
           FB024-16]
          Length = 516

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 92/250 (36%), Gaps = 28/250 (11%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSG 76
            P     Q+  +       + +  ++ S+      A   +   P+     + + G SG G
Sbjct: 159 APIPASMQIDRNTGLNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAYNPLFIYGGSGLG 218

Query: 77  KSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDI 116
           K+ L +                   S++  +   + IA      L    + V   L++DI
Sbjct: 219 KTHLLHAIGNYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREVDFLLIDDI 278

Query: 117 DLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             L   +  L   FH  N++H     +++T+   P         + SRL+   +  I  P
Sbjct: 279 QFLQGKEQTLEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWGLLTDIQPP 338

Query: 174 DDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGIT 231
           + +    ++ +  A   +   D  +  YI   +  ++   E  + ++    ALS G  ++
Sbjct: 339 NLETRIAILRRKSAQENLQGYDDAVLEYIASNISSNIRELEGALLRVTAYAALSGGGSVS 398

Query: 232 RSLAAEVLKE 241
              A E+L++
Sbjct: 399 LDTAKEILRD 408


>gi|282853039|ref|ZP_06262376.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes J139]
 gi|282582492|gb|EFB87872.1| chromosomal replication initiator protein DnaA [Propionibacterium
           acnes J139]
          Length = 500

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L        + FH
Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQSVDISLAEVVLKDL 397


>gi|291285948|ref|YP_003502764.1| chromosomal replication initiator protein DnaA [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883108|gb|ADD66808.1| chromosomal replication initiator protein DnaA [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 446

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 84/231 (36%), Gaps = 27/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDK------- 87
            +  + +   + E +    ++           + + G SG GK+ L +   ++       
Sbjct: 112 YTFANFVAGGSNEFSFSACEAVSEGQFMQYNPLFIYGGSGLGKTHLMHAVGNRILEKFPK 171

Query: 88  ------SRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLDFND---TQLFHIIN 131
                 +  T  +++  SL +  ++  +        +L +D+  L        + F+  N
Sbjct: 172 MKVLYITSETFTNDMINSLRTRKMEEFQARYRTIDVLLFDDVQFLSGKQRSTEEFFNTFN 231

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +++     +++T+   P         L SR     +  I  P  +    +++K      +
Sbjct: 232 ALYDNQKQIIITSDKTPAEIPDMEDRLKSRFAWGLIADIQPPSTEEKTAILMKRAEFMGL 291

Query: 192 FIDKKLAAYIVQRM-ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +  ++A +I + M   ++      + ++   A     G+T  LA + L +
Sbjct: 292 KLPGEVALFIAENMITENVRELMGALVRLSAFASFHKRGLTIDLAKDALDK 342


>gi|256851674|ref|ZP_05557062.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii 27-2-CHN]
 gi|260661609|ref|ZP_05862521.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii 115-3-CHN]
 gi|256615632|gb|EEU20821.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii 27-2-CHN]
 gi|260547666|gb|EEX23644.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii 115-3-CHN]
          Length = 455

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 26/238 (10%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--- 84
           +       + D  +     + A     +    P      + + G  G GK+ L       
Sbjct: 116 NLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQ 175

Query: 85  --SDKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---T 124
              ++  +      +++  +  I+               T   +L++DI      +    
Sbjct: 176 MLCERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGIQE 235

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH   +++     ++MT+   P         L SR      V+I+ PD +    ++ K
Sbjct: 236 EFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRK 295

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                 + ID     YI  ++  ++   E  + K+   A      I  +LA + L + 
Sbjct: 296 KAESEGLVIDDDTLDYIASQVSTNIRELEGALVKVQAHATIEKADINVNLARDALTDL 353


>gi|282934242|ref|ZP_06339519.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii 208-1]
 gi|297205283|ref|ZP_06922679.1| ATPase [Lactobacillus jensenii JV-V16]
 gi|281301716|gb|EFA93983.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii 208-1]
 gi|297149861|gb|EFH30158.1| ATPase [Lactobacillus jensenii JV-V16]
          Length = 455

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 26/238 (10%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--- 84
           +       + D  +     + A     +    P      + + G  G GK+ L       
Sbjct: 116 NLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQ 175

Query: 85  --SDKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---T 124
              ++  +      +++  +  I+               T   +L++DI      +    
Sbjct: 176 MLCERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGIQE 235

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH   +++     ++MT+   P         L SR      V+I+ PD +    ++ K
Sbjct: 236 EFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRK 295

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                 + ID     YI  ++  ++   E  + K+   A      I  +LA + L + 
Sbjct: 296 KAESEGLVIDDDTLDYIASQVSTNIRELEGALVKVQAHATIEKADINVNLARDALTDL 353


>gi|295694687|ref|YP_003587925.1| chromosomal replication initiator protein DnaA [Bacillus tusciae
           DSM 2912]
 gi|295410289|gb|ADG04781.1| chromosomal replication initiator protein DnaA [Bacillus tusciae
           DSM 2912]
          Length = 450

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 85/250 (34%), Gaps = 32/250 (12%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSC 79
               QL          + +  +V      A     +    PS     + + G  G GK+ 
Sbjct: 108 FPPPQLS------SKYTFESFVVGENNRFAHAACLAVAEAPSLSYNPLFIYGGVGLGKTH 161

Query: 80  LANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLL 119
           L                     +++  +   + I         +  + V   L++D+  L
Sbjct: 162 LMQAIGHYVLKHHPEKRVVYISTEQFTNEFINAILYKTVPDFRNRYRSVDILLVDDVQFL 221

Query: 120 DFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              +    + FH  N++H     +++++   P         L SR ++  +  I  PD +
Sbjct: 222 AGKEQTQEEFFHTFNTLHLEGKQIVLSSDRPPKEIPTLEDRLRSRFESGLITDIQPPDFE 281

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               ++ K      + I + + ++I  ++  ++   E  + ++   +      +   LAA
Sbjct: 282 TRVAILRKKAKAEGLDIGEDVISFIASKVNTNIRELEGALIRIVAYSSVVNQDMNSELAA 341

Query: 237 EVLKETQQCD 246
           E LK+    D
Sbjct: 342 EALKDIINAD 351


>gi|315037231|ref|YP_004030799.1| chromosomal replication initiation protein [Lactobacillus
           amylovorus GRL 1112]
 gi|325955722|ref|YP_004286332.1| chromosomal replication initiation protein [Lactobacillus
           acidophilus 30SC]
 gi|312275364|gb|ADQ58004.1| chromosomal replication initiation protein [Lactobacillus
           amylovorus GRL 1112]
 gi|325332287|gb|ADZ06195.1| chromosomal replication initiation protein [Lactobacillus
           acidophilus 30SC]
 gi|327182550|gb|AEA30997.1| chromosomal replication initiation protein [Lactobacillus
           amylovorus GRL 1118]
          Length = 455

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 88/254 (34%), Gaps = 27/254 (10%)

Query: 13  PDKQKNDQPKNKEEQ-LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68
           P      QP+N+E+Q            + D+ +     + A     +    P      + 
Sbjct: 97  PQHDIRVQPRNREQQEFTKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLF 156

Query: 69  LVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRK-------------- 109
           + G  G GK+ L      +       +      +++  +  I++ K              
Sbjct: 157 IFGGVGLGKTHLMQAIGHQMLLERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTC 216

Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI      +    + FH   +++     ++MT+   P         L SR    
Sbjct: 217 DLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWG 276

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             V+I+ PD +    ++ +      + ID     YI  +++ ++   E  + K+   A  
Sbjct: 277 LQVEITPPDLETRIAILRRKAESEGLTIDDNTLDYIASQVDTNIRELEGALVKVQAYATI 336

Query: 226 RGMGITRSLAAEVL 239
               I  +LA E L
Sbjct: 337 EKADIDVNLAREAL 350


>gi|323341100|ref|ZP_08081348.1| replication initiation protein DnaA [Lactobacillus ruminis ATCC
           25644]
 gi|323091521|gb|EFZ34145.1| replication initiation protein DnaA [Lactobacillus ruminis ATCC
           25644]
          Length = 461

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 78/201 (38%), Gaps = 23/201 (11%)

Query: 67  VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRKP----------- 110
           + + G  G GK+ L +        D   +      +++  +  I++ K            
Sbjct: 161 LFIYGGVGLGKTHLMHAIGNRLLQDNPNARIKYVSSEAFANDFINSIKSKNSEAFRQKYR 220

Query: 111 ----VLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI      D    + FH  N+++     +++T+   P         L SR +
Sbjct: 221 NLDLLLVDDIQFFAEKDGTQEEFFHTFNALYDDKKQIVLTSDRLPNEIPKLQKRLVSRFR 280

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I+ PD +    ++ K      + +     +YI  +++ ++   E  + ++   A
Sbjct: 281 WGLSVDITPPDFETRTAILRKKAESDFLDVSDDALSYIAGKIDSNIRELEGALMRVSAYA 340

Query: 224 LSRGMGITRSLAAEVLKETQQ 244
             +   IT SLAAE L +  Q
Sbjct: 341 KLKHQRITTSLAAEALSDLNQ 361


>gi|58336355|ref|YP_192940.1| chromosomal replication initiation protein [Lactobacillus
           acidophilus NCFM]
 gi|71151800|sp|Q5FN15|DNAA_LACAC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|58253672|gb|AAV41909.1| chromosomal replication initiator protein [Lactobacillus
           acidophilus NCFM]
          Length = 455

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 84/251 (33%), Gaps = 26/251 (10%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71
             +    +  + +           + D+ +     + A     +    P      + + G
Sbjct: 100 NLQTTPTRAPQREFAKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFG 159

Query: 72  PSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PV 111
             G GK+ L          ++  +      +++  +  I++ K                +
Sbjct: 160 GVGLGKTHLMQAIGHQMLVERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLL 219

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI      +    + FH   +++     ++MT+   P         L SR      V
Sbjct: 220 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQV 279

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +I+ PD +    ++ +      + ID     YI  +++ ++   E  + K+   A     
Sbjct: 280 EITPPDLETRIAILRRKAEAEGLTIDDDTLDYIASQVDTNIRELEGALVKVQAYATIEKA 339

Query: 229 GITRSLAAEVL 239
            I  +LA E L
Sbjct: 340 DIDINLAREAL 350


>gi|227902594|ref|ZP_04020399.1| DNA-directed DNA replication initiator protein [Lactobacillus
           acidophilus ATCC 4796]
 gi|227869683|gb|EEJ77104.1| DNA-directed DNA replication initiator protein [Lactobacillus
           acidophilus ATCC 4796]
          Length = 465

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 84/251 (33%), Gaps = 26/251 (10%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71
             +    +  + +           + D+ +     + A     +    P      + + G
Sbjct: 110 NLQTTPTRAPQREFAKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFG 169

Query: 72  PSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PV 111
             G GK+ L          ++  +      +++  +  I++ K                +
Sbjct: 170 GVGLGKTHLMQAIGHQMLVERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLL 229

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI      +    + FH   +++     ++MT+   P         L SR      V
Sbjct: 230 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQV 289

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +I+ PD +    ++ +      + ID     YI  +++ ++   E  + K+   A     
Sbjct: 290 EITPPDLETRIAILRRKAEAEGLTIDDDTLDYIASQVDTNIRELEGALVKVQAYATIEKA 349

Query: 229 GITRSLAAEVL 239
            I  +LA E L
Sbjct: 350 DIDINLAREAL 360


>gi|251794037|ref|YP_003008768.1| chromosomal replication initiation protein [Paenibacillus sp.
           JDR-2]
 gi|247541663|gb|ACS98681.1| chromosomal replication initiator protein DnaA [Paenibacillus sp.
           JDR-2]
          Length = 450

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 34/243 (13%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW- 84
            F+       + D  ++ +    A     +    P++    + L G  G GK+ L +   
Sbjct: 107 TFNHMLNPKYTFDTFVIGANNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIG 166

Query: 85  ----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND-- 123
                           S+K  +   + I  +      +  + +   L++DI  L   D  
Sbjct: 167 HYIMDHNPSTKIMYISSEKFTNEFINAIRDNRGESFRNKYRNIDVLLIDDIQFLAGKDGT 226

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N++H+    +++++   P         L SR +   +  I  PD +    ++
Sbjct: 227 QEEFFHTFNALHEERKQIVISSDRTPKEIPTLEERLRSRFEWGLITDIQAPDLETRIAIL 286

Query: 183 VKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEV 238
            K      + I  +   YI  +++   R L     ++V      +L     IT  LAAE 
Sbjct: 287 RKKAKAENLDIPNEAMVYIANQIDTNIRELEGALIRVVA---YSSLINQ-DITSHLAAEA 342

Query: 239 LKE 241
           LK+
Sbjct: 343 LKD 345


>gi|170719188|ref|YP_001746876.1| chromosomal replication initiation protein [Pseudomonas putida
           W619]
 gi|226735835|sp|B1J3Y2|DNAA_PSEPW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|169757191|gb|ACA70507.1| chromosomal replication initiator protein DnaA [Pseudomonas putida
           W619]
          Length = 511

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + +  +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 180 FTFETFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 237

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 238 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 295

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 296 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 355

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 356 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 410


>gi|237749314|ref|ZP_04579794.1| chromosomal replication initiator protein dnaA [Oxalobacter
           formigenes OXCC13]
 gi|229380676|gb|EEO30767.1| chromosomal replication initiator protein dnaA [Oxalobacter
           formigenes OXCC13]
          Length = 459

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS---- 90
           ++ D  +   A + A        + P      + L G  G GK+ L +   ++  +    
Sbjct: 128 MTFDSFVTGKANQLARAAAIQVANNPGVSYNPLYLFGGVGLGKTHLIHAIGNQVLADTPS 187

Query: 91  --TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFHIIN 131
              R+ +  + +  ++                +   +L++DI           + F+   
Sbjct: 188 AKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDMLLIDDIQFFSGKSRTQEEFFYAFE 247

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++      +++T+ T+P         L SR  +   V I  P+ +    +++K      I
Sbjct: 248 ALIAARKQIIITSDTYPKEISGMDDRLTSRFDSGLTVAIEPPELEMRVAILIKKACQEGI 307

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +   +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 308 QLSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHGRDITIELTKEALKDL 358


>gi|261368844|ref|ZP_05981727.1| ATPase [Subdoligranulum variabile DSM 15176]
 gi|282569116|gb|EFB74651.1| ATPase [Subdoligranulum variabile DSM 15176]
          Length = 436

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 83/236 (35%), Gaps = 30/236 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIW---------- 84
            + ++ +   + + A     +    PS     + + GPSG GK+ L N            
Sbjct: 105 FTFENFIKGPSNQFAYAAAQAVAANPSGAYNPLFIYGPSGLGKTHLLNAIQIEIKKNHPD 164

Query: 85  -------SDKSRSTRFSNIAKSLDSIL---IDTRKPVLLEDIDLLDFND---TQLFHIIN 131
                   +   +   + +  +              +L++DI  L   +    + FH  N
Sbjct: 165 FNIVYVDCEMFTNEIITAVKTATTEQFRQKYRQADVLLIDDIQFLAGKESTQEEFFHTFN 224

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++H     +++ +             L +R +      I  PD +    ++ +      +
Sbjct: 225 TLHNDGRQIVIASDRPAKEIKSLEERLRTRFEWGLTADIQPPDFETRVAIVKRKAELLNL 284

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG----ITRSLAAEVLKETQ 243
            +   +A YI   +++++   E  V K++   +  G+     +T +   + L ++Q
Sbjct: 285 DLPDDVAEYIANHLKQNIRQLEGAVKKLNAYYMLEGIAPCIGVTTTAIKDTLNDSQ 340


>gi|71066177|ref|YP_264904.1| regulatory inactivation of DnaA Hda protein [Psychrobacter arcticus
           273-4]
 gi|71039162|gb|AAZ19470.1| regulatory inactivation of DnaA Hda protein [Psychrobacter arcticus
           273-4]
          Length = 270

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 15/234 (6%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           E QL  +       S  D          +  +          + L G   +GKS L +  
Sbjct: 3   EAQLSLNLDIKHDASLSDF-SGPGWMSIIDAVRQLHVGLIGQLYLFGSPATGKSHLLSAI 61

Query: 85  SDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132
            +       S I  SL+ ++         ++    + ++D+++++ N      LFH+IN 
Sbjct: 62  CESFIEMDKSAICLSLNELIHTDVNVLSSLENFSLIAIDDLEVIEQNSQWQEALFHLINR 121

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQI 191
             +    LL  A          L DL +RL  A   K+    D    E ++  +   R  
Sbjct: 122 SREGQRQLLFAANKPASELPFQLRDLLTRLAQAPSFKVPTGHDLADREALLQSILRRRGW 181

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLKETQQ 244
             D+++A Y++      +    ++++ +    +      I++++  + L+   +
Sbjct: 182 QFDERIANYLLTEGPHRIGAMMEVLNYIQPMFSNLGRSNISKAVIGDALRTIDE 235


>gi|21229479|ref|NP_635396.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|188989397|ref|YP_001901407.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. campestris str. B100]
 gi|38257667|sp|Q8PEH5|DNAA_XANCP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735863|sp|B0RLI8|DNAA_XANCB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|21110939|gb|AAM39320.1| chromosomal replication initiator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|167731157|emb|CAP49329.1| chromosomal replication initiator protein [Xanthomonas campestris
           pv. campestris]
          Length = 442

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 27/238 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
               +  + +   +       A++            ++L G +G GK+ L     +  R 
Sbjct: 107 DSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAAGNALRQ 166

Query: 91  TR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127
                          FS + ++L    +D           +L++DI      D    + F
Sbjct: 167 ANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDRTQEEFF 226

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++      +++T   +P       P L SRL     V I  PD +    +++    
Sbjct: 227 HTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKAR 286

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++  + 
Sbjct: 287 ERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRDLLRA 344


>gi|325528073|gb|EGD05285.1| chromosomal replication initiation protein [Burkholderia sp. TJI49]
          Length = 365

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 31  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 90

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 91  KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 150

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 151 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 210

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 211 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 264


>gi|21326649|gb|AAL30089.1| chromosomal replication initiator protein DnaA [Xanthomonas
           campestris pv. campestris]
          Length = 442

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 27/238 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
               +  + +   +       A++            ++L G +G GK+ L     +  R 
Sbjct: 107 DSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAAGNALRQ 166

Query: 91  TR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127
                          FS + ++L    +D           +L++DI      D    + F
Sbjct: 167 ANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDRTQEEFF 226

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++      +++T   +P       P L SRL     V I  PD +    +++    
Sbjct: 227 HTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKAR 286

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++  + 
Sbjct: 287 ERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRDLLRA 344


>gi|313887738|ref|ZP_07821420.1| chromosomal replication initiator protein DnaA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846347|gb|EFR33726.1| chromosomal replication initiator protein DnaA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 449

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 88/237 (37%), Gaps = 30/237 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIW--- 84
               + +  +V  + E A           ++  +  S  + + G  G GK+ L +     
Sbjct: 110 NPKYTFETFVVGKSNEFAHAAALAVSENYENPQNAFSNPLFIYGGVGLGKTHLMHAIGHF 169

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---T 124
                         S++  +   ++I  + +    +  +    +L++DI  +   D    
Sbjct: 170 VLEQDPTKKILYVTSEQFTNELINSIQTNKNEEFRNKYRKVDLLLIDDIQFIADKDRTQE 229

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N +H+ +  +++T+   P         L SR     VV I  PD +    ++ K
Sbjct: 230 EFFHTFNELHEQNKQIVLTSDKPPKDIKSLEERLISRFAWGLVVDIGPPDLETRIAILRK 289

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                   + +++  +I + +  ++   E  + ++   +      I+   AA VL++
Sbjct: 290 KADSEGFEVSQEVMTFIAENVRSNIRELEGALSRVMAYSKLTDSDISVESAAIVLRD 346


>gi|167900712|ref|ZP_02487917.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 408

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 74  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 133

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 134 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 193

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 194 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 253

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 254 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 307


>gi|225848588|ref|YP_002728751.1| chromosomal replication initiator protein DnaA
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644495|gb|ACN99545.1| chromosomal replication initiator protein DnaA
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 442

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 97/239 (40%), Gaps = 26/239 (10%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS--- 85
                  +  +L++ +  + A +   +    P ++   + + G  G GK+ + +  +   
Sbjct: 103 LTLNPKFTFKNLVIGNHNKVAYQSCIAVAENPGKIFNPLFIYGDVGLGKTHMLHATAYHL 162

Query: 86  ---DKSRSTRFSNIAKSLDSILIDTRKPVLLE------DIDLLDFNDTQLF--------- 127
              +++    ++        +    +K ++LE      D+DLL  +D Q           
Sbjct: 163 LKRNQNAKIIYTTADTFASEMFSYIQKGMILEFRKRYKDVDLLLMDDIQFLVGKERTQIE 222

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             HI N ++     +++++   P S       L SR  +  +V+I+ PD +    +I K 
Sbjct: 223 FYHIFNILYTAGKQIILSSDQPPNSLKGIEKRLISRFNSGLIVEITKPDLETKVNIINKK 282

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            ++  I I +++A ++ + +  S+   E  V ++       G  +   +A  VLK+  +
Sbjct: 283 ASEYGIEIPREVAIFLGKIVNSSVRELEGAVKRLKAYCDIMGKPLNLEVAKTVLKDVVE 341


>gi|257091664|ref|YP_003165305.1| chromosomal replication initiation protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044188|gb|ACV33376.1| chromosomal replication initiator protein DnaA [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 473

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 95/253 (37%), Gaps = 33/253 (13%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID----SWPSWPSRVVILVGP 72
             D+P  ++ +L          + ++L+V  A + A         S        + + G 
Sbjct: 126 DRDRPSYEKTRLI------PTFTFENLIVGKANDLARAASRQVAISPGEATYNPLFIYGG 179

Query: 73  SGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILID--------------TRKPVL 112
           +G GK+ L +   +        R  R+ +       ++                +   +L
Sbjct: 180 AGLGKTHLIHAIGNHILECFPDRIVRYVHAEDYYSDVVRAYQQKSFDVFKRYYRSLDVLL 239

Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           L+D+   +       + F + N++ +    L++++ T+P +       L +R      V+
Sbjct: 240 LDDVHFFNGKNRTQEEFFFVFNALSEAKKQLVISSDTYPKNISGLEDRLVTRFDWGLTVQ 299

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  P+ +    ++ K      + +D ++A Y+ + +  ++   E  + K+   +   G  
Sbjct: 300 IEPPETEMRVAILKKKAELEGVLLDDEVAFYVAKHLRSNVRELEGALKKVLAYSAFHGRE 359

Query: 230 ITRSLAAEVLKET 242
           I   LA E LK+ 
Sbjct: 360 IALDLAKEALKDV 372


>gi|167916970|ref|ZP_02504061.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei BCC215]
 gi|238561943|ref|ZP_00441124.2| chromosomal replication initiator protein DnaA [Burkholderia mallei
           GB8 horse 4]
 gi|238523506|gb|EEP86944.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           GB8 horse 4]
          Length = 406

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 72  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 131

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 132 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 191

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 192 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 251

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 252 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 305


>gi|167892200|ref|ZP_02479602.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei 7894]
          Length = 397

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 63  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 122

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 123 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 182

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 183 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 242

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 243 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 296


>gi|167843721|ref|ZP_02469229.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei B7210]
 gi|167908929|ref|ZP_02496020.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei 112]
          Length = 389

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 55  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 114

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 115 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 174

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 175 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 234

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 235 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 288


>gi|167822116|ref|ZP_02453587.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei 9]
          Length = 386

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 52  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 111

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 112 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 171

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 172 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 231

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 232 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 285


>gi|167813575|ref|ZP_02445255.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei 91]
          Length = 391

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 57  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 116

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 117 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 176

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 177 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 236

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 237 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 290


>gi|282877834|ref|ZP_06286646.1| chromosomal replication initiator protein DnaA [Prevotella buccalis
           ATCC 35310]
 gi|281300045|gb|EFA92402.1| chromosomal replication initiator protein DnaA [Prevotella buccalis
           ATCC 35310]
          Length = 470

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 82/251 (32%), Gaps = 31/251 (12%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSC 79
           + +QL  +      ++ ++ +   + +        + +         + + GPSG GK+ 
Sbjct: 124 QPQQLDPNL--NPHLTFNNYIEGDSNKLPRSVGMSIAEHPNKTQFNPMFIYGPSGCGKTH 181

Query: 80  L---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID- 117
           L                     A ++  +  +    N           T   ++++DI  
Sbjct: 182 LINAIGMLSKQLYPQKRVLYVSARLFQVQYTNAVLQNSVNDF-INFYQTIDLLIVDDIQE 240

Query: 118 --LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
                      FHI N + +    +++ +   PV        L +R     + ++  P+ 
Sbjct: 241 WMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNERLLTRFACGLIAELEKPNL 300

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
                ++        + I   +  YI Q    S+   + +++ +   ++     +   LA
Sbjct: 301 QLCIDILNSKIQRDGLQIPDDVVQYIAQTANGSVRDLQGVINSLLAYSVVYNSVVDMRLA 360

Query: 236 AEVLKETQQCD 246
             V++   + D
Sbjct: 361 QRVIQRAVKID 371


>gi|167620899|ref|ZP_02389530.1| chromosomal replication initiation protein [Burkholderia
           thailandensis Bt4]
          Length = 401

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 67  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 126

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 127 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 186

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 187 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 246

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 247 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 300


>gi|167582970|ref|ZP_02375844.1| chromosomal replication initiation protein [Burkholderia
           thailandensis TXDOH]
          Length = 392

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 58  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 117

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 118 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 177

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 178 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 237

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 238 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 291


>gi|66766353|ref|YP_241115.1| chromosomal replication initiation protein [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|81307653|sp|Q4V0S8|DNAA_XANC8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|66571685|gb|AAY47095.1| chromosomal replication initiator [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 442

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 83/238 (34%), Gaps = 27/238 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
               +  + +   +       A++            ++L G +G GK+ L     +  R 
Sbjct: 107 DSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAAGNALRQ 166

Query: 91  TR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDF---NDTQLF 127
                          FS + ++L    +D           +L++DI           + F
Sbjct: 167 ANPAAKVMYLRSEQFFSAMIRALHDKAMDQFKRQFHQIDALLIDDIQFFAGMDRTQEEFF 226

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++      +++T   +P       P L SRL     V I  PD +    +++    
Sbjct: 227 HTFNALFDGRQHIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKAR 286

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A E L++  + 
Sbjct: 287 ERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRDLLRA 344


>gi|167736497|ref|ZP_02409271.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei 14]
          Length = 385

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 51  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 110

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 111 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 170

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 171 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 230

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 231 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 284


>gi|78484347|ref|YP_390272.1| chromosomal replication initiator protein DnaA [Thiomicrospira
           crunogena XCL-2]
 gi|123728109|sp|Q31JS5|DNAA_THICR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78362633|gb|ABB40598.1| chromosomal replication initiator protein DnaA [Thiomicrospira
           crunogena XCL-2]
          Length = 467

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87
               + D  +   A + A          P        + G  G GK+ L +   ++    
Sbjct: 133 NTNFTFDTFVEGKANQLAAAAARQVADNPGGSYNPFFIYGGVGLGKTHLMHAIGNELMRR 192

Query: 88  ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128
                          +++  +L    ID       +   +L++DI      +    + FH
Sbjct: 193 DPNARVVYLHSERFVADMVNALRHNKIDEFKRFYRSLDALLIDDIQFFAKKEQSQEEFFH 252

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T+  FP         L SR      + +  P+ +    +++K  A+
Sbjct: 253 TFNTLLEGNKQVILTSDRFPKEVDGLEDRLKSRFGWGLTIAVEPPEFEMRVAILMKKAAE 312

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               +  ++A +I +R+  ++   E  + ++   A      +T  LA + LK+ 
Sbjct: 313 FGFLLPDEVAFFIAKRLRGNVRDLEGALKRVGAFAQFTQQLVTVDLAKDALKDL 366


>gi|119385558|ref|YP_916613.1| chromosomal replication initiation protein [Paracoccus
           denitrificans PD1222]
 gi|119376153|gb|ABL70917.1| chromosomal replication initiator protein DnaA [Paracoccus
           denitrificans PD1222]
          Length = 448

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 88/265 (33%), Gaps = 32/265 (12%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVIL 69
           P  ++   P+   E+   + P     + ++ +V    E A                 + L
Sbjct: 88  PVVKRPAPPRVSGEE-ELAAPLDSRFTFENFVVGKPNELAHAAARRVAEGGPVTFNPLFL 146

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------------------LIDTRK 109
            G  G GK+ L +  + + +  +       L +                     L  T  
Sbjct: 147 YGGVGLGKTHLMHAIAREIQIRQPEARVLYLSAEQFMYRFVQALRDRTVMDFKELFRTVS 206

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            ++++D+  +   D    + FH  N++      ++++A   P         + SRL+   
Sbjct: 207 VLMVDDVQFIAGKDSTQEEFFHTFNTLVDQGKQIVISADRAPGEIKDMEERIKSRLQCGL 266

Query: 167 VVKISLPDDDFLEKVIVK-----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           VV +   D +    ++             + I   +  ++  R+  ++   E  + ++  
Sbjct: 267 VVDLHPTDYELRLGILQSKTDSFRAQYPGLLIAPGVLEFLAHRITSNVRVLEGALQRLFA 326

Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246
            A   G  IT  +  E L +  + +
Sbjct: 327 FASLMGREITLDMTQECLADILRAN 351


>gi|291455692|ref|ZP_06595082.1| putative replication initiator protein [Bifidobacterium breve DSM
           20213]
 gi|291382620|gb|EFE90138.1| putative replication initiator protein [Bifidobacterium breve DSM
           20213]
          Length = 488

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 92/263 (34%), Gaps = 40/263 (15%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RV 66
           F VP ++ N  P+                + D  +   +   A  +  +           
Sbjct: 131 FSVPQQKMNRDPETH---------LNKSFTFDSFVPGDSNRFARTVALAVAEGSGQDFNP 181

Query: 67  VILVGPSGSGKSCLANIWSD---------KSRSTRFSNIAKSLDSILIDTRKP------- 110
           + + G SG GK+ L N   +         K R              L +T +        
Sbjct: 182 LCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTNDFIDALQNTNQSQGQIAEF 241

Query: 111 ---------VLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                    +L++DI  L   +  L   FH  NS+HQ +  +++ +   P +       L
Sbjct: 242 NRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNSLHQANKRIVIASDVAPKNLKGFEARL 301

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SR ++   V +  PD +    ++  + A     I   +   I +R   ++   E  + +
Sbjct: 302 ISRFESGLTVDVKPPDLETRIAILRMIAAMNGSKIPNDVLDLIAERFTENIRELEGALTR 361

Query: 219 MDNLALSRGMGITRSLAAEVLKE 241
           +  +A      +TR+LA + L++
Sbjct: 362 VTAVASLSNQPVTRALAEQTLQD 384


>gi|313205512|ref|YP_004044689.1| chromosomal replication initiator protein dnaa [Riemerella
           anatipestifer DSM 15868]
 gi|312444828|gb|ADQ81183.1| chromosomal replication initiator protein DnaA [Riemerella
           anatipestifer DSM 15868]
 gi|315023384|gb|EFT36394.1| Chromosomal replication initiator protein dnaA [Riemerella
           anatipestifer RA-YM]
 gi|325335056|gb|ADZ11330.1| DnaA [Riemerella anatipestifer RA-GD]
          Length = 492

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 89/282 (31%), Gaps = 43/282 (15%)

Query: 6   EDYSFFVPDKQKNDQPKNKEE-QLFFSFP----------RCLGISRDDLLVHSAIEQAVR 54
           +  S  VP  Q+   P    + Q     P               S D+ +   + + A  
Sbjct: 112 KGMSMPVPKPQEIMPPSLSSKIQNPLVVPGLKKISVESNLNPVHSFDNFVEGESNKFAFS 171

Query: 55  ----LIDSWPSWPSRVVILVGPSGSGKSCLANI-------------------------WS 85
               +           + + G  G GK+ +A                           + 
Sbjct: 172 AAKIIAKRPGETSFNPMFIYGGVGVGKTHIAQAIGLEIKNTYPDKVVHYLSSEKFIQQFI 231

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLM 142
             + S R +  ++   +        ++++DI  L          FHI + +HQ    +++
Sbjct: 232 KAANSNRGNANSREDFANFYKMLDVLIVDDIQFLSGKRATQDSFFHIFDYLHQNGKQIIL 291

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T+   P         + SR K     +I  PD D   K+IV       I + + +  ++ 
Sbjct: 292 TSDKAPADIMDIEERVVSRFKWGLTAEIKSPDYDTRRKIIVDKLHRDGIALSEDMIDFLA 351

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             ++ ++     +++ +   +      +T  L  E + +   
Sbjct: 352 GEVQSNVRELIGVINAVIAYSTIYKSDLTLDLLKETINKISA 393


>gi|299135923|ref|ZP_07029107.1| chromosomal replication initiator protein DnaA [Acidobacterium sp.
           MP5ACTX8]
 gi|298602047|gb|EFI58201.1| chromosomal replication initiator protein DnaA [Acidobacterium sp.
           MP5ACTX8]
          Length = 474

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 93/267 (34%), Gaps = 33/267 (12%)

Query: 8   YSFFVPDKQKNDQPKN---KEEQLFFSFPR----CLGISRDDLLVHSAIEQAVRLIDSWP 60
           +S   P   +N  P       EQ  F +            D  ++ S  + A     +  
Sbjct: 107 HSLNAPRSLRNGAPTGNGVGPEQSRFDWNTAAQLNPRYQFDSFVIGSGNQFAHAAAQAVA 166

Query: 61  SWPSRV---VILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTR--- 108
             PS+    + + G  G GK+ L      +        +  + +  K  + ++   R   
Sbjct: 167 ERPSKAYNPLFVYGGVGMGKTHLMQAIGHQVKLRQPHAAISYVSGEKFTNEMINSVRYDK 226

Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++ +   P      
Sbjct: 227 MTGFRDKFRTVDVLLIDDIQFLAGKERTQEEFFHTFNALHESMKQIVIASDRPPKELADF 286

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   VV I  PD +    ++ K     Q  +   +A +I   +  ++   E 
Sbjct: 287 EDRLRSRFEWGLVVDIQPPDLETKVAILQKKAELEQTVLPMDVALFIAGNVRTNVRELEG 346

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++       G+ IT   A + LK+
Sbjct: 347 ALVRLIAWCSLHGVEITLPTAQQCLKQ 373


>gi|332294862|ref|YP_004436785.1| Chromosomal replication initiator protein dnaA [Thermodesulfobium
           narugense DSM 14796]
 gi|332177965|gb|AEE13654.1| Chromosomal replication initiator protein dnaA [Thermodesulfobium
           narugense DSM 14796]
          Length = 442

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 93/254 (36%), Gaps = 31/254 (12%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73
           +N+    K EQ  F        + +  +V      A     +    P +    + + G +
Sbjct: 92  ENNNKVEKNEQKGF----LSKYTFETFVVGPGNRMAHAASLAVADNPGKAYNPLFIYGGA 147

Query: 74  GSGKSCLANIWS-----------------DKSRSTRFSNIAKSLDSILIDTRKPV---LL 113
           G GK+ L    +                 +K  +   + I     +   +  + +   L+
Sbjct: 148 GLGKTHLLQAIATTIRSKKPNLYILYITSEKFTNEFINAIKDDKINSFQEHYRNIDILLV 207

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  +   +    + FH  N++++    +++++   P         L +R +   +  I
Sbjct: 208 DDIQFIAGKERTQEEFFHTFNTLYESGKQIVLSSDRPPKEIRTLEERLRTRFEMGLIADI 267

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALSRGMG 229
             PD +    ++ K      I ID +    I +++  ++   E ++ K M   ++++   
Sbjct: 268 QPPDLETRIAILQKKAEIENIDIDPEALVLIAEKVASNIRELEGVLTKSMALCSINQESR 327

Query: 230 ITRSLAAEVLKETQ 243
           IT   A E LK  +
Sbjct: 328 ITIKHAQEALKNIE 341


>gi|313889534|ref|ZP_07823180.1| chromosomal replication initiator protein DnaA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122146|gb|EFR45239.1| chromosomal replication initiator protein DnaA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 451

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 92/278 (33%), Gaps = 37/278 (13%)

Query: 4   MKEDYSF-----FVPDKQKNDQPKNKEEQLFFSF---PRCLGISRDDLLVHSAIEQAVRL 55
           +  DY F      +P  Q+  Q  + +                S ++ +       AV  
Sbjct: 74  IAVDYQFEDDLEMMPGTQEGSQAFSSQNINPLPLVKSDLNPKYSFENFIQGDENRWAVAA 133

Query: 56  ---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS------------------RSTRFS 94
              + + P      + + G  G GK+ L N   +                          
Sbjct: 134 SIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLDNPNARVKYITAENFINEFVIH 193

Query: 95  NIAKSLDSILIDTRKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTF 147
               ++D +    R    +L++DI  L          + F+  N++H  +  +++T+   
Sbjct: 194 IRLDTMDELKEKFRNLDLLLIDDIQSLAKKTLLGTQEEFFNTFNALHNNNKQIVLTSDRT 253

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P         L +R K    V I+ PD +    ++     +      +    Y+  + + 
Sbjct: 254 PDHLNDLEQRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYSFTFPQDTIEYLAGQFDS 313

Query: 208 SLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKETQQ 244
           ++   E  +  +  +A   +   IT  +AAE ++  +Q
Sbjct: 314 NVRDLEGALKDISLVANFKQIDRITVDIAAEAIRARKQ 351


>gi|296118604|ref|ZP_06837182.1| DNA-directed DNA replication initiator protein [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968503|gb|EFG81750.1| DNA-directed DNA replication initiator protein [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 381

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 104/266 (39%), Gaps = 39/266 (14%)

Query: 9   SFFVPDKQKNDQPK-----NKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSW 59
           SF  P   +  + +     N+E+ L          + D+ ++ S+       AV + ++ 
Sbjct: 17  SFQAPSSARIPRERPAHDPNREQSL------NPTHTFDNFVIGSSNRFANGAAVAVAEN- 69

Query: 60  PSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRK 109
           P+     + + G SG GK+ L +          +  R   ++        ++S+  D ++
Sbjct: 70  PARAYNPLFIWGGSGLGKTHLLHAAGNYAQLLHKGLRVKYVSSEEFTNDYINSLRDDRQE 129

Query: 110 P----------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                      ++++DI  L+  +    + FH  N++HQ +  +++++   P        
Sbjct: 130 SFKRRYRNLDILMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLED 189

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L +R +   +  I  PD +    +++K  +     +D+ +   I  R E S+   E  +
Sbjct: 190 RLRTRFEGGLITDIQPPDLETRIAILMKKASADGTTVDRAVLELIASRFESSIRELEGAL 249

Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242
            ++   +      I   +A   L++ 
Sbjct: 250 IRVSAYSSLVNEPINIEMAEVALRDL 275


>gi|291165897|gb|EFE27944.1| ATPase involved in DNA replication initiation [Filifactor alocis
           ATCC 35896]
          Length = 443

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 87/237 (36%), Gaps = 27/237 (11%)

Query: 36  LGISRDDLLVHSAIEQAVRLI---DSWPSWPSRVVILVGPSGSGKSCLANI--------- 83
              + D  +V +    A        + P+     + + G  G GK+ L +          
Sbjct: 107 PKYTFDSFVVGNNNVLAHSACVAVANDPAHSYNPLFIYGGVGLGKTHLMHAIGNHVLSQN 166

Query: 84  ------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128
                       ++++  ++   +  +   +        +L++DI  +   +    + FH
Sbjct: 167 KDVKILYLSSETFTNELINSIKDDTNEEFRNKYRKDVDILLIDDIQFISEKERTQEEFFH 226

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  D  +++++   P    +    L SR +   +V I  PD +    ++ K   +
Sbjct: 227 TFNTLHGADKQIIISSDRAPKEIPMLADRLRSRFEMGLIVDIQPPDYETRIAILRKKAQE 286

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +  +   +  YI + ++ ++   E  + ++   +      IT  L+ E LK   Q 
Sbjct: 287 EKHHVPDLVFEYIAKNIKSNIRELEGALTRIFAYSDLTKREITPELSQEALKNIFQS 343


>gi|330814957|ref|YP_004358662.1| Chromosomal replication initiator protein DnaA [Burkholderia
           gladioli BSR3]
 gi|327367350|gb|AEA58706.1| Chromosomal replication initiator protein DnaA [Burkholderia
           gladioli BSR3]
          Length = 527

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 193 NPVLTFDNFVTGKANQLARAAAIQVADNPGVSYNPLFLYGGVGLGKTHLIHAIGNQLLLD 252

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 253 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 312

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 313 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 372

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 373 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 426


>gi|315640356|ref|ZP_07895472.1| DNA-directed DNA replication initiator protein [Enterococcus
           italicus DSM 15952]
 gi|315483892|gb|EFU74372.1| DNA-directed DNA replication initiator protein [Enterococcus
           italicus DSM 15952]
          Length = 446

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 92/258 (35%), Gaps = 31/258 (12%)

Query: 15  KQKNDQPKNKEEQLFFSFPRC----LGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVV 67
           ++K +    + EQ     P         + D  ++    + A      +   P      +
Sbjct: 88  QKKKEPQAVQPEQ-AEEVPSKAMLNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPL 146

Query: 68  ILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------------- 109
              G  G GK+ L +         +  +      +++  +  I++ K             
Sbjct: 147 FFYGGVGLGKTHLMHAIGHQMLQKRPNARIKYVSSENFTNDFINSIKRKEMEEFRNEYRT 206

Query: 110 --PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI  L   +    + F+    ++  +  +++T+   P         L SR   
Sbjct: 207 VDLLLVDDIQFLVNKEGTQEEFFNTFEELYLNNKQIVLTSDRLPNEIPTLPERLVSRFAW 266

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              V I+ PD +    ++ K      + I     +YI  +++ ++   E  + ++   A 
Sbjct: 267 GLSVDITPPDLETRTAILRKKAEAENLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAA 326

Query: 225 SRGMGITRSLAAEVLKET 242
            R + IT SLAAE LK  
Sbjct: 327 MRNVDITTSLAAEALKAL 344


>gi|222528058|ref|YP_002571940.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312621128|ref|YP_004022741.1| chromosomal replication initiator protein dnaa
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222454905|gb|ACM59167.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312201595|gb|ADQ44922.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 454

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 93/266 (34%), Gaps = 38/266 (14%)

Query: 6   EDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI----DSWPS 61
           E Y  F+  KQ          QL          + +  +V +    A        ++ P 
Sbjct: 92  EKYKRFLKPKQDEKP--EIVTQL------NPKYTFETFVVGNNNRLAHAAALAVAETPPG 143

Query: 62  W-PSRVVILVGPSGSGKSCLANIWSDK------------------SRSTRFSNIAKSLDS 102
                 + + G  G GK+ L +                       +     +   +  D 
Sbjct: 144 ERTYNPLFIYGGVGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDE 203

Query: 103 ILIDTRKP--VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             +  R    +L++DI  L   +    + FH  N++++ +  +++++   P         
Sbjct: 204 FRLKYRNVDVLLIDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDR 263

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR +   +  I  PD +    ++ K        + + +  +I  ++E ++   E  ++
Sbjct: 264 LRSRFEWGLITDIQPPDFETRIAILSKKCQLEGTPVPQHILEFIASKIETNIRELEGALN 323

Query: 218 KMDNLA--LSRGMGITRSLAAEVLKE 241
           K+   +  ++    IT  LA + LKE
Sbjct: 324 KILAYSKLMAPDKEITLDLAEKALKE 349


>gi|317126742|ref|YP_004093024.1| chromosomal replication initiator protein DnaA [Bacillus
           cellulosilyticus DSM 2522]
 gi|315471690|gb|ADU28293.1| chromosomal replication initiator protein DnaA [Bacillus
           cellulosilyticus DSM 2522]
          Length = 451

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 77/213 (36%), Gaps = 30/213 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 117 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDH 176

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 177 KPNAKVVYLSSEKFTNEFINSIRDNKAVNFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 236

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 237 TFNALHEERKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 296

Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVD 217
             + I  ++  YI  +++   R L     ++V 
Sbjct: 297 ENLDIPNEVMLYIANQIDTNIRELEGALIRVVA 329


>gi|167589705|ref|ZP_02382093.1| chromosomal replication initiation protein [Burkholderia ubonensis
           Bu]
          Length = 357

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 23  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 82

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 83  KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 142

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 143 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 202

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 203 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 256


>gi|256831256|ref|YP_003159983.1| chromosomal replication initiator protein DnaA [Jonesia
           denitrificans DSM 20603]
 gi|256684787|gb|ACV07680.1| chromosomal replication initiator protein DnaA [Jonesia
           denitrificans DSM 20603]
          Length = 476

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 91/267 (34%), Gaps = 37/267 (13%)

Query: 13  PDKQKNDQPKNKEEQL---------FFSFPRC--LGISRDDLLVHSAIE---QAVRLIDS 58
           P  Q +    +    L                       +  ++ S+      A   +  
Sbjct: 102 PHTQDSAPTPDAPRSLVDREPVVPKSLDEGHRLNPKYIFETFVIGSSNRFAHAAAVAVAE 161

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------LDSILIDTR 108
            P+     + + G SG GK+ L +   + + +   S   K           ++SI  +  
Sbjct: 162 APAKAYNPLFIYGGSGLGKTHLLHAIGNYALNLYPSAKVKYVNSEEFTNDFINSIRDEKA 221

Query: 109 KP----------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                       +L++DI  L   +    + FH  N++H  +  +++T+   P       
Sbjct: 222 GAFQRRHREVDFLLIDDIQFLQGKEATMEEFFHTFNALHNANKQVVITSDLPPKQLAGFE 281

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L SR +   +  +  PD +    ++ K  A  ++     +  YI  R+  ++   E  
Sbjct: 282 DRLRSRFEWGLITDVQPPDLETRIAILRKKAAGERLNAPDDVLEYIASRISSNIRELEGA 341

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKET 242
           + ++   A      + R LA  VLK+ 
Sbjct: 342 LIRVTAFANLNRQPVDRQLAEIVLKDL 368


>gi|294101016|ref|YP_003552874.1| chromosomal replication initiator protein DnaA [Aminobacterium
           colombiense DSM 12261]
 gi|293615996|gb|ADE56150.1| chromosomal replication initiator protein DnaA [Aminobacterium
           colombiense DSM 12261]
          Length = 442

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 93/274 (33%), Gaps = 35/274 (12%)

Query: 3   LMKEDYS------FFVPDKQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQAV 53
           LM + Y+           ++   Q   +  Q   + PR         +  +V  +   A 
Sbjct: 68  LMDKGYAQSLELKVASEARKDEQQRAERAAQHTGTLPRSGLNPNYIFNSFVVGKSNRLAH 127

Query: 54  RL---IDSWPSWPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRF 93
                +   P      + + G  G GK+ L +                   S+K  +   
Sbjct: 128 AASLAVAETPGEAYNPLFIWGGVGLGKTHLMHAIGHYVLNKNNSLKVTYVSSEKFINEFI 187

Query: 94  SNIAKSLDSILIDTRKPV---LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTF 147
            +I  +         + V   L++DI  L     +  + FH  N +H     +++ +   
Sbjct: 188 QSIKNNRTQEFKSKYRSVDILLIDDIQFLGNKGSSQEEFFHTFNQLHVSKKQIVICSDRP 247

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P         L SR +   V  I +PD +    ++ K    R   + + + +++ Q +  
Sbjct: 248 PKEIQNIEDRLVSRFEWGLVTDIQMPDLETRIAILQKKAQIRNYEVPEDVISFLAQNVPS 307

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++   E  ++++   A      IT   A + LK+
Sbjct: 308 NIRELEGALNRIIACAELNSEPITEENATQWLKD 341


>gi|223038517|ref|ZP_03608811.1| chromosomal replication initiator protein DnaA [Campylobacter
           rectus RM3267]
 gi|222880374|gb|EEF15461.1| chromosomal replication initiator protein DnaA [Campylobacter
           rectus RM3267]
          Length = 436

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--------- 82
               + ++ +V  + + A     +      ++   + + GP+G GK+ L           
Sbjct: 102 NPSYTFENFVVGDSNQFAFLSAKAVSEQLGKIYNPLFIYGPTGLGKTHLLQSVGNFCLNG 161

Query: 83  ---IWSDKSRSTRFSNIAKSLDSILIDTRK------PVLLEDIDLLDFND---TQLFHII 130
              +    S            +  +   R+       +L++D+  L   D    + FH  
Sbjct: 162 GKMVICVTSEQFITDFTYNLNNHSMERFREKYRNCDVLLIDDVQFLGKTDKIQEEFFHTF 221

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +H  +  ++MT+   P         L +R +   +  I+ P+ D    +I K     +
Sbjct: 222 NELHAKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIIADITPPELDTKIAIIKKKCEFDK 281

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I++  ++  YI   M  ++   E  +  ++  A      IT   A  +L++ 
Sbjct: 282 IYLGIEVINYIATNMGDNIREIESAIINLNAYARLMRQEITLEFAKNILRDQ 333


>gi|72117120|gb|AAZ59383.1| chromosomal replication initiator protein, DnaA [Ralstonia eutropha
           JMP134]
          Length = 611

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
              ++ D+ +   A + A        + P +    + L G  G GK+ L +   +     
Sbjct: 277 NPILTFDNFVTGKANQLARAAAIQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 336

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128
             ++R           D +    RK              +L++DI           + F+
Sbjct: 337 NPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 396

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    +++K  A 
Sbjct: 397 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAAA 456

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + +++A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 457 ENVSVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGRDITIEVTREALKDL 510


>gi|226326146|ref|ZP_03801664.1| hypothetical protein COPCOM_03965 [Coprococcus comes ATCC 27758]
 gi|225205688|gb|EEG88042.1| hypothetical protein COPCOM_03965 [Coprococcus comes ATCC 27758]
          Length = 466

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 88/250 (35%), Gaps = 40/250 (16%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS------ 85
               + D  +V      A      +   P      + L G  G GK+ L +  +      
Sbjct: 120 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHYILDR 179

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP--------------------VLLEDIDLLDFND-- 123
           + S+   +       + ++   R                      +L++D+  +   +  
Sbjct: 180 EPSKKVLYVTSETFTNDLITAIRNGKTGNDLAMNAFRDKYRNNDVLLIDDVQFIIGKEST 239

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N +H     +++++   P         L +R +   +  IS+PD +    ++
Sbjct: 240 QEEFFHTFNHLHNAGKQIVISSDKPPKDMTTLEARLRTRFEWGLIADISVPDYETRMAIL 299

Query: 183 VKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR---GMGITRSLAA 236
            K     Q+    I  ++  YI   ++ ++   E  ++K+  +AL R         SLAA
Sbjct: 300 YKKIELDQLERYQIPDEVIQYIAMNIKTNIRELEGSLNKL--IALYRIGGRKNFDVSLAA 357

Query: 237 EVLKETQQCD 246
           E LK+    D
Sbjct: 358 EALKDMIAPD 367


>gi|167717462|ref|ZP_02400698.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei DM98]
          Length = 381

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 47  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 106

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 107 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 166

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 167 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 226

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 227 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 280


>gi|161611268|ref|YP_294227.2| chromosomal replication initiation protein [Ralstonia eutropha
           JMP134]
          Length = 584

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
              ++ D+ +   A + A        + P +    + L G  G GK+ L +   +     
Sbjct: 250 NPILTFDNFVTGKANQLARAAAIQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 309

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128
             ++R           D +    RK              +L++DI           + F+
Sbjct: 310 NPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 369

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    +++K  A 
Sbjct: 370 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAAA 429

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + +++A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 430 ENVSVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGRDITIEVTREALKDL 483


>gi|83719949|ref|YP_443733.1| chromosomal replication initiation protein [Burkholderia
           thailandensis E264]
 gi|123726547|sp|Q2STL6|DNAA_BURTA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|83653774|gb|ABC37837.1| chromosomal replication initiator protein DnaA [Burkholderia
           thailandensis E264]
          Length = 536

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 202 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 261

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 262 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 321

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 322 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 381

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 382 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 435


>gi|328468760|gb|EGF39731.1| chromosomal replication initiation protein [Lactobacillus
           helveticus MTCC 5463]
          Length = 455

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 86/246 (34%), Gaps = 26/246 (10%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76
           Q K   +Q   +       + D+ +     + A     +    P      + + G  G G
Sbjct: 105 QEKRAPKQFTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFGGVGLG 164

Query: 77  KSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDI 116
           K+ L         +++  +      +++  +  I++ K                +L++DI
Sbjct: 165 KTHLMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDI 224

Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
                 +    + FH   +++     ++MT+   P         L SR      V+I+ P
Sbjct: 225 QFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPP 284

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D +    ++ +      + ID     YI  +++ ++   E  + K+   A      I  +
Sbjct: 285 DLETRIAILRRKAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIERADINVN 344

Query: 234 LAAEVL 239
           LA E L
Sbjct: 345 LAREAL 350


>gi|313611875|gb|EFR86331.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes FSL F2-208]
          Length = 327

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 74/213 (34%), Gaps = 30/213 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290

Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVD 217
             + I  ++  YI  +++   R L     ++V 
Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVA 323


>gi|297521958|ref|ZP_06940344.1| DNA replication initiation factor [Escherichia coli OP50]
          Length = 103

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 47/102 (46%)

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            LL+T    P    + LPDL SRL    + K+    D+   + +      R   + + + 
Sbjct: 1   RLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVG 60

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            ++++R++R +      +D++D  +++    +T     E+LK
Sbjct: 61  RFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 102


>gi|296453188|ref|YP_003660331.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296182619|gb|ADG99500.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 500

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 31/235 (13%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKS 88
            + D  +   +   A  +  +           + + G SG GK+ L N         D  
Sbjct: 161 FTFDSFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPG 220

Query: 89  RSTRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL--- 126
              R+    +  +  +   + P                   +L++DI  L   +  L   
Sbjct: 221 LKVRYVTSEEFTNEFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQF 280

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++HQ +  +++ +   P +       L SR ++   V +  PD +    ++  + 
Sbjct: 281 FHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIA 340

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +     I   +   I +R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 341 SMNGSKIPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395


>gi|167834929|ref|ZP_02461812.1| chromosomal replication initiation protein [Burkholderia
           thailandensis MSMB43]
          Length = 412

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 78  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 137

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 138 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 197

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 198 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 257

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 258 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 311


>gi|323465558|gb|ADX69245.1| DNA-directed DNA replication initiator protein [Lactobacillus
           helveticus H10]
          Length = 469

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 86/246 (34%), Gaps = 26/246 (10%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76
           Q K   +Q   +       + D+ +     + A     +    P      + + G  G G
Sbjct: 119 QEKRAPKQFTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFGGVGLG 178

Query: 77  KSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDI 116
           K+ L         +++  +      +++  +  I++ K                +L++DI
Sbjct: 179 KTHLMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDI 238

Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
                 +    + FH   +++     ++MT+   P         L SR      V+I+ P
Sbjct: 239 QFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPP 298

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D +    ++ +      + ID     YI  +++ ++   E  + K+   A      I  +
Sbjct: 299 DLETRIAILRRKAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIERADINVN 358

Query: 234 LAAEVL 239
           LA E L
Sbjct: 359 LAREAL 364


>gi|329942825|ref|ZP_08291604.1| chromosomal replication initiator protein DnaA [Chlamydophila
           psittaci Cal10]
 gi|332287417|ref|YP_004422318.1| chromosomal replication initiator protein [Chlamydophila psittaci
           6BC]
 gi|313847997|emb|CBY16994.1| chromosomal replication initiator protein [Chlamydophila psittaci
           RD1]
 gi|325506740|gb|ADZ18378.1| chromosomal replication initiator protein [Chlamydophila psittaci
           6BC]
 gi|328815085|gb|EGF85074.1| chromosomal replication initiator protein DnaA [Chlamydophila
           psittaci Cal10]
 gi|328914665|gb|AEB55498.1| chromosomal replication initiator protein DnaA [Chlamydophila
           psittaci 6BC]
          Length = 460

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 77/238 (32%), Gaps = 34/238 (14%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
               ++  + LV    +   R++       +    +P   + L GP GSGK+ L     +
Sbjct: 104 VNPEMTFANFLVTPENDLPFRILQEFTKPAEDATGFPFNPIYLFGPEGSGKTHLMQAAVN 163

Query: 87  ---KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDF---NDTQ 125
              +S        +      L+   +                + +EDI++         +
Sbjct: 164 VLRESGGKILYVASDLFTEHLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSGKGATQEE 223

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+      +++++   P         L SR +    V I     + L   +++ 
Sbjct: 224 FFHTFNSLQTEGKLIVISSAYAPADLKAMEERLISRFEWGVAVPIHPLTKEGLRSFLMRQ 283

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                I I+     +++  +   +      ++ +            + L+ ++L E  
Sbjct: 284 TEQLSIRIEDSALDFLIHALSSDMKALLHALNLL------SKRVAYKKLSQQLLYEDD 335


>gi|325685106|gb|EGD27237.1| DNA-directed DNA replication initiator protein [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 454

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 26/254 (10%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71
           + K ++ + +  +           + ++ +     + A     +    P      + + G
Sbjct: 99  QAKPEKARPQGREFTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFYNPLFIFG 158

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------------------DTRKPV 111
             G GK+ L      +  + R       + S                        T   +
Sbjct: 159 GVGLGKTHLMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLL 218

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI      +    + FH   +++     ++MT+   P         L SR      V
Sbjct: 219 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQV 278

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +I+ PD +    ++ K      + ID+    Y+  +++ ++   E  + K+   A  +  
Sbjct: 279 EITPPDLETRIAILRKKAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQ 338

Query: 229 GITRSLAAEVLKET 242
            I   LA   L + 
Sbjct: 339 DINIGLARSALADL 352


>gi|313835170|gb|EFS72884.1| replication initiator protein DnaA [Propionibacterium acnes
           HL037PA2]
 gi|314929146|gb|EFS92977.1| replication initiator protein DnaA [Propionibacterium acnes
           HL044PA1]
 gi|314970905|gb|EFT15003.1| replication initiator protein DnaA [Propionibacterium acnes
           HL037PA3]
 gi|328905785|gb|EGG25561.1| chromosomal replication initiator protein DnaA [Propionibacterium
           sp. P08]
          Length = 500

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +       S 
Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128
                    S + +  D    +                  L++DI  L+       + FH
Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTREFRRSYRDVDVLLVDDIQFLESKIQTQEEFFH 283

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R+  ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 344 EKITVEPDVLEFIASRIHTNIRELEGALIRVTAFASLNQQPVDTSLAEVVLKDL 397


>gi|300811995|ref|ZP_07092451.1| chromosomal replication initiator protein DnaA [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497021|gb|EFK32087.1| chromosomal replication initiator protein DnaA [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 454

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 26/254 (10%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71
           + K ++ + +  +           + ++ +     + A     +    P      + + G
Sbjct: 99  QAKPEKARPQGREFTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFYNPLFIFG 158

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------------------DTRKPV 111
             G GK+ L      +  + R       + S                        T   +
Sbjct: 159 GVGLGKTHLMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLL 218

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI      +    + FH   +++     ++MT+   P         L SR      V
Sbjct: 219 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQV 278

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +I+ PD +    ++ K      + ID+    Y+  +++ ++   E  + K+   A  +  
Sbjct: 279 EITPPDLETRIAILRKKAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQ 338

Query: 229 GITRSLAAEVLKET 242
            I   LA   L + 
Sbjct: 339 DINIGLARSALADL 352


>gi|313122776|ref|YP_004033035.1| chromosomal replication initiator protein dnaa [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312279339|gb|ADQ60058.1| Chromosomal replication initiator protein dnaA [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 454

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 26/254 (10%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71
           + K ++ + +  +           + ++ +     + A     +    P      + + G
Sbjct: 99  QAKPEKARPQGREFTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFYNPLFIFG 158

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------------------DTRKPV 111
             G GK+ L      +  + R       + S                        T   +
Sbjct: 159 GVGLGKTHLMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLL 218

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI      +    + FH   +++     ++MT+   P         L SR      V
Sbjct: 219 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQV 278

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +I+ PD +    ++ K      + ID+    Y+  +++ ++   E  + K+   A  +  
Sbjct: 279 EITPPDLETRIAILRKKAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQ 338

Query: 229 GITRSLAAEVLKET 242
            I   LA   L + 
Sbjct: 339 DINIGLARSALADL 352


>gi|312126263|ref|YP_003991137.1| chromosomal replication initiator protein dnaa
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776282|gb|ADQ05768.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 454

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 93/266 (34%), Gaps = 38/266 (14%)

Query: 6   EDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI----DSWPS 61
           E Y  F+  KQ          QL          + +  +V +    A        ++ P 
Sbjct: 92  EKYKKFLKPKQDEKP--EIVTQL------NPKYTFETFVVGNNNRLAHAAALAVAETPPG 143

Query: 62  W-PSRVVILVGPSGSGKSCLANIWSDK------------------SRSTRFSNIAKSLDS 102
                 + + G  G GK+ L +                       +     +   +  D 
Sbjct: 144 ERTYNPLFIYGGVGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDE 203

Query: 103 ILIDTRKP--VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             +  R    +L++DI  L   +    + FH  N++++ +  +++++   P         
Sbjct: 204 FRLKYRNVDVLLIDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDR 263

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR +   +  I  PD +    ++ K        + + +  +I  ++E ++   E  ++
Sbjct: 264 LRSRFEWGLITDIQPPDFETRIAILSKKCQLEGTPVPQHILEFIASKIETNIRELEGALN 323

Query: 218 KMDNLA--LSRGMGITRSLAAEVLKE 241
           K+   +  ++    IT  LA + LKE
Sbjct: 324 KILAYSKLMAPDKEITLELAEKALKE 349


>gi|297181712|gb|ADI17894.1| ATPase involved in DNA replication initiation [uncultured
           Chloroflexi bacterium HF0200_06I16]
          Length = 451

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               S D  +   +   A+     +  +P      + L   SG GK+ L      +  S 
Sbjct: 118 NPKYSFDSFVAGPSNRLALSASQTVSEFPGQSYNPLYLHSASGLGKTHLLQSIGKRCASR 177

Query: 92  RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130
             S +  + +    +    +                  LL+D+  L   +      FH  
Sbjct: 178 GLSVLYVTSEQFTNEFITAIRNRTTEDFRRRYRSVQVLLLDDVQFLSGKEQTHEGFFHTF 237

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +H   + +++++   P +       L SR +   +  I  PD +    ++     + +
Sbjct: 238 NELHNSGNQVVISSDRAPKALDSIEDRLRSRFEGGLIADIQPPDLETRMSILANKAVELR 297

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + ++  +   I +R++R++   E  +++M   +    + IT     ++L E 
Sbjct: 298 VNLESNVIELIAKRIQRNVRELEGSLNRMVAYSQLMNVNITLESTLQILNEM 349


>gi|104773258|ref|YP_618238.1| chromosomal replication initiation protein [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116513229|ref|YP_812135.1| chromosomal replication initiation protein [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122276000|sp|Q04CX5|DNAA_LACDB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|122984030|sp|Q1GC43|DNAA_LACDA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|103422339|emb|CAI96847.1| Chromosomal replication initiator protein dnaA [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092544|gb|ABJ57697.1| DNA replication ATPase initiation [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325124856|gb|ADY84186.1| Chromosomal replication initiator protein dnaA [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 454

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 26/254 (10%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71
           + K ++ + +  +           + ++ +     + A     +    P      + + G
Sbjct: 99  QAKPEKARPQGREFTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFYNPLFIFG 158

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------------------DTRKPV 111
             G GK+ L      +  + R       + S                        T   +
Sbjct: 159 GVGLGKTHLMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLL 218

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI      +    + FH   +++     ++MT+   P         L SR      V
Sbjct: 219 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQV 278

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +I+ PD +    ++ K      + ID+    Y+  +++ ++   E  + K+   A  +  
Sbjct: 279 EITPPDLETRIAILRKKAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQ 338

Query: 229 GITRSLAAEVLKET 242
            I   LA   L + 
Sbjct: 339 DINIGLARSALADL 352


>gi|260101878|ref|ZP_05752115.1| DNA-directed DNA replication initiator protein [Lactobacillus
           helveticus DSM 20075]
 gi|260084306|gb|EEW68426.1| DNA-directed DNA replication initiator protein [Lactobacillus
           helveticus DSM 20075]
          Length = 500

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 86/246 (34%), Gaps = 26/246 (10%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76
           Q K   +Q   +       + D+ +     + A     +    P      + + G  G G
Sbjct: 150 QEKRAPKQFTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFGGVGLG 209

Query: 77  KSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDI 116
           K+ L         +++  +      +++  +  I++ K                +L++DI
Sbjct: 210 KTHLMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDI 269

Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
                 +    + FH   +++     ++MT+   P         L SR      V+I+ P
Sbjct: 270 QFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPP 329

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D +    ++ +      + ID     YI  +++ ++   E  + K+   A      I  +
Sbjct: 330 DLETRIAILRRKAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIERADINVN 389

Query: 234 LAAEVL 239
           LA E L
Sbjct: 390 LAREAL 395


>gi|113866032|ref|YP_724521.1| chromosomal replication initiation protein [Ralstonia eutropha H16]
 gi|123033387|sp|Q0KFR8|DNAA_CUPNH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|113524808|emb|CAJ91153.1| chromosomal replication initiator protein DnaA [Ralstonia eutropha
           H16]
          Length = 588

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 93/257 (36%), Gaps = 33/257 (12%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68
           +P  Q +D    +             ++ D+ +   A + A        + P +    + 
Sbjct: 238 MPGHQPSDTVHERSR-------LNPILTFDNFVTGKANQLARAAAIQVANNPGKSYNPLY 290

Query: 69  LVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKP----------- 110
           L G  G GK+ L +   +       ++R           D +    RK            
Sbjct: 291 LYGGVGLGKTHLIHAIGNFMLLENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSL 350

Query: 111 --VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI           + F+   ++    + +++T+ T+P         L SR  + 
Sbjct: 351 DLLLIDDIQFFSGKNRTQEEFFYAFEALIANRAQVIITSDTYPKEISGIDDRLISRFDSG 410

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             V I  P+ +    +++K  A   + + +++A ++ + +  ++   E  + K+   +  
Sbjct: 411 LTVAIEPPELEMRVAILMKKAAAENVNVPEEVAFFVAKHLRSNVRELEGALRKILAFSNF 470

Query: 226 RGMGITRSLAAEVLKET 242
            G  IT  +  E LK+ 
Sbjct: 471 HGKDITIEVTREALKDL 487


>gi|332662000|ref|YP_004444788.1| Chromosomal replication initiator protein dnaA [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330814|gb|AEE47915.1| Chromosomal replication initiator protein dnaA [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 488

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 88/261 (33%), Gaps = 41/261 (15%)

Query: 10  FFVPD--KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS 64
           F +P   K K D       QL            D+ +       A      I   P   S
Sbjct: 133 FVIPGIKKMKVDP------QL------NPNYRFDNYIEGDCNRLARSAGHAISRKPGQTS 180

Query: 65  -RVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRKPVLLED--- 115
              +++ G  G GK+ LA    ++        T     ++   + +I   K   + D   
Sbjct: 181 FNPLVIFGNVGLGKTHLAQAIGNEILDKFPTKTVLYVSSEKFTNQIIAGIKNNAINDVVT 240

Query: 116 ----IDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
               ID+L  +D Q            FHI N +HQ    +++T+   P         L S
Sbjct: 241 FYQLIDVLIVDDIQFLEGKKKTQDIFFHIFNQLHQNGKQIILTSDRPPKDLQDMEERLIS 300

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R K      +  PD +    ++        + I + +  +I   ++ ++   E ++  + 
Sbjct: 301 RFKWGLSADLQAPDLETRIAILEYKMMQEGVEIAQDVTEFICYNIKNNIRELEGVLISLI 360

Query: 221 NLALSRGMGITRSLAAEVLKE 241
             +      I   LA EV++ 
Sbjct: 361 AQSSLNRREIDIDLAKEVVRN 381


>gi|332971204|gb|EGK10167.1| DNA-directed DNA replication initiator protein DnaA [Desmospora sp.
           8437]
          Length = 460

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 90/234 (38%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD--KSR 89
               + D  ++ S    A     +    P++    + + G  G GK+ L +   +  +S 
Sbjct: 122 NSRYTFDTFVIGSGNRFAHAASLAVAEAPAKSYNPLFIYGGVGLGKTHLMHAIGNYVQSH 181

Query: 90  STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
           ST    +  S ++   +    +                  L++DI  L   +    + FH
Sbjct: 182 STHTRVVYLSSETFTNEFINSIRDNRADDFRNRYRNVDILLIDDIQFLAGKEQTQEEFFH 241

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     +++++   P +       L SR +   +  I  PD +    ++ K    
Sbjct: 242 TFNALHGESKQIVISSDRPPKAIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAIA 301

Query: 189 RQIFI-DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + I + ++ A+I  R+E ++   E  + ++   +      +T  LAAE LK+
Sbjct: 302 DNLEINNSEVMAFIADRVETNIRELEGALIRVVAYSALTNQPVTVELAAEALKD 355


>gi|297184288|gb|ADI20405.1| ATPase involved in DNA replication initiation [uncultured alpha
           proteobacterium EB080_L43F08]
          Length = 451

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 91/272 (33%), Gaps = 39/272 (14%)

Query: 11  FVPDKQKNDQPKNKEEQL-FFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWPSW---P 63
             P K+ + +P+ K  +      P        + D+ +V    E A              
Sbjct: 84  ITPAKKSSTKPEAKNTKTGSTDLPGASLDPRYTFDNFVVGKPNELAHAAARRVAEGDDVS 143

Query: 64  SRVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRK--------- 109
              + L G  G GK+ L +  +         +      A+      +   +         
Sbjct: 144 FNPLFLHGGVGLGKTHLMHAIAWEIKKRDPNARVLYLSAEQFMYRFVQALRFKDTISFKE 203

Query: 110 ------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LC 159
                  ++++D+  +        + FH  N++   +  ++++    PV     L D + 
Sbjct: 204 MFRSVDVLMVDDVQFIAGKSSTQEEFFHTFNALIDQNKQVIISGDRAPVDME-QLEDRIK 262

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAE 213
           SRL+   VV +   D +    ++     + Q      + +   +  ++ QR+  ++   E
Sbjct: 263 SRLQWGLVVDVHPTDYELRLGILQSK-QESQARYNSTVEVSPGVLEFMAQRISSNVRVLE 321

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             + ++       G  +T  +A E L +  + 
Sbjct: 322 GALTRLYAFGSLVGRPVTLEMAQESLSDILRA 353


>gi|213690929|ref|YP_002321515.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|254777888|sp|B7GSF9|DNAA_BIFLS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|213522390|gb|ACJ51137.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|291517733|emb|CBK71349.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. longum F8]
 gi|320456975|dbj|BAJ67596.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 500

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 31/235 (13%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKS 88
            + D  +   +   A  +  +           + + G SG GK+ L N         D  
Sbjct: 161 FTFDSFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPG 220

Query: 89  RSTRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL--- 126
              R+    +  +  +   + P                   +L++DI  L   +  L   
Sbjct: 221 LKVRYVTSEEFTNEFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQF 280

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++HQ +  +++ +   P +       L SR ++   V +  PD +    ++  + 
Sbjct: 281 FHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIA 340

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +     I   +   I +R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 341 SMNGSKIPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395


>gi|311748263|ref|ZP_07722048.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1]
 gi|126576758|gb|EAZ81006.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1]
          Length = 472

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 81/235 (34%), Gaps = 29/235 (12%)

Query: 35  CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
               +    +       A      +           +++ G  G GK+ L     ++   
Sbjct: 134 NPNYTFSAYIEGDCNRLARSAGFAVATKPGITSFNPLMVYGGVGLGKTHLVQAIGNEIKN 193

Query: 88  ----------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127
                     S     +    S+    + +          ++++DI  L   D      F
Sbjct: 194 GPEDKFVLYVSSEKFVNQFMDSIKDGNVKSFTNFYMQVDVLIIDDIQFLAGKDRTQEMFF 253

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N +HQ    ++MT+   P         L SR K      + +PD +    +I +   
Sbjct: 254 HIFNHLHQNKKQIIMTSDCPPRDLKGLEERLLSRFKWGLTADLQMPDFETRVAIIRRKMQ 313

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKE 241
              IFI   +  Y+   ++ ++   E ++  +  + +LSR + I+  LA  V+K 
Sbjct: 314 SEGIFIPDDVVEYLAYTVDTNVRELEGILISLIAHASLSR-VEISLELAKTVMKN 367


>gi|254447382|ref|ZP_05060848.1| chromosomal replication initiator protein DnaA [gamma
           proteobacterium HTCC5015]
 gi|198262725|gb|EDY87004.1| chromosomal replication initiator protein DnaA [gamma
           proteobacterium HTCC5015]
          Length = 458

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 81/243 (33%), Gaps = 27/243 (11%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN 82
           Q   +     G + D  +   + + A          P       + L G  G GK+ L +
Sbjct: 115 QPPVNHNLEAGHTFDSFVEGKSNQMAKAAAQHVAQAPGDGYYNPLFLYGGVGLGKTHLMH 174

Query: 83  IWSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122
                                    ++ K+L    ID       +   +L++DI      
Sbjct: 175 AVGHAILERNPKARVVYLHSERFVGDMVKALQHNAIDEFKRLYRSVDALLIDDIQFFAGK 234

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++ +    +++T   +P         L SR      V I  P+ +   
Sbjct: 235 ERSQEEFFHTFNALLERKQQMILTCDRYPKEVNGLEERLKSRFGWGLTVAIEPPELEERV 294

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            ++        + +   +A +I Q++  ++   E  + ++   +   G  IT   A E L
Sbjct: 295 AILKSKAEIANVDMKDDVAFFIAQKVRSNVRELEGAMKRVIVNSQFTGREITVDFAREQL 354

Query: 240 KET 242
           ++ 
Sbjct: 355 RDQ 357


>gi|23465223|ref|NP_695826.1| chromosomal replication initiation protein [Bifidobacterium longum
           NCC2705]
 gi|189440298|ref|YP_001955379.1| chromosomal replication initiation protein [Bifidobacterium longum
           DJO10A]
 gi|227547513|ref|ZP_03977562.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239622843|ref|ZP_04665874.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|312133632|ref|YP_004000971.1| dnaa [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482359|ref|ZP_07941379.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322688192|ref|YP_004207926.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis 157F]
 gi|322690194|ref|YP_004219764.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|38257643|sp|Q8G6K0|DNAA_BIFLO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735779|sp|B3DP22|DNAA_BIFLD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|23325851|gb|AAN24462.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum NCC2705]
 gi|189428733|gb|ACD98881.1| ATPase for DNA replication initiation [Bifidobacterium longum
           DJO10A]
 gi|227212028|gb|EEI79924.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239514840|gb|EEQ54707.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|311772890|gb|ADQ02378.1| DnaA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916239|gb|EFV37641.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320455050|dbj|BAJ65672.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320459528|dbj|BAJ70148.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 500

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 31/235 (13%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKS 88
            + D  +   +   A  +  +           + + G SG GK+ L N         D  
Sbjct: 161 FTFDSFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPG 220

Query: 89  RSTRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL--- 126
              R+    +  +  +   + P                   +L++DI  L   +  L   
Sbjct: 221 LKVRYVTSEEFTNEFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQF 280

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++HQ +  +++ +   P +       L SR ++   V +  PD +    ++  + 
Sbjct: 281 FHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIA 340

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +     I   +   I +R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 341 SMNGSKIPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395


>gi|325980882|ref|YP_004293284.1| chromosomal replication initiator protein DnaA [Nitrosomonas sp.
           AL212]
 gi|325530401|gb|ADZ25122.1| chromosomal replication initiator protein DnaA [Nitrosomonas sp.
           AL212]
          Length = 474

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
               + D+ +   A + A      +   P      + + G  G GK+ L     +     
Sbjct: 140 NPNFTFDNFITGKANQLARAGAIQVAESPGVAYNPLFIYGGVGLGKTHLIQAIGNYVHEN 199

Query: 87  -KSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
            KS   R+ +  K +  ++                +   +L++D+           + F+
Sbjct: 200 NKSAKIRYVHAEKYVSDVVSAYQHKAFDKFKLYYHSLDLLLVDDVQFFGGKNRTQEEFFY 259

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T  T+P         L SR      V +  P+ +    +++K    
Sbjct: 260 AFNALIETHKQVIITCDTYPKEITGLEERLVSRFGWGLTVAVEPPELEMRVAILLKKAEM 319

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +D+ +A +I + +  ++   E  + ++   +      IT  LA E LK+ 
Sbjct: 320 EKIRLDENVAFFIAKHIRSNVRELEGALKRVLAFSRFVNQDITLDLAKEALKDL 373


>gi|312794750|ref|YP_004027672.1| Chromosomal replication initiator protein dnaA [Burkholderia
           rhizoxinica HKI 454]
 gi|312166525|emb|CBW73528.1| Chromosomal replication initiator protein dnaA [Burkholderia
           rhizoxinica HKI 454]
          Length = 530

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86
              ++ ++ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 196 NPVLTFENFVTGKANQLARAAAIQVADNPGVSYNPLFLYGGVGLGKTHLIHAIGNQLLQD 255

Query: 87  KSRST-RFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
           K+ +  R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 256 KANARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 315

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 316 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 375

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +++ +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 376 EGVALNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 429


>gi|254490242|ref|ZP_05103432.1| chromosomal replication initiator protein DnaA [Methylophaga
           thiooxidans DMS010]
 gi|224464589|gb|EEF80848.1| chromosomal replication initiator protein DnaA [Methylophaga
           thiooxydans DMS010]
          Length = 418

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 27/252 (10%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPS 73
           N +P   + +     P     + D  +   + + A          P       + L G +
Sbjct: 66  NSKPSETKAEPAIGNPMNPLFTFDSYVEGKSNQIARAASLHVAEAPGTSGYNPLFLYGGT 125

Query: 74  GSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLL 113
           G GK+ L     +K             S      ++  +L +  ID       +   +L+
Sbjct: 126 GLGKTHLMLAVGNKIKQDNPKARVIYLSSERFVQDMITALRNNAIDQFKSHYRSADALLI 185

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI      +    + F+  NS+ +    +++T   FP         L SRL     V I
Sbjct: 186 DDIQFFAKKERSQEEFFYTFNSLLEGQRQIILTCDRFPKEVENLDERLQSRLGWGLTVAI 245

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             P+ +    +++K      I + + +A +I +R++ ++   E  + ++   +      +
Sbjct: 246 EPPELETRVAILIKKAQQNLITLPEDVAFFIAKRIKSNVRDLEGALQRVLAFSRFTNQPL 305

Query: 231 TRSLAAEVLKET 242
           +  +A E LK+ 
Sbjct: 306 SIDMAQEALKDL 317


>gi|238025685|ref|YP_002909916.1| chromosomal replication initiator protein DnaA [Burkholderia glumae
           BGR1]
 gi|237874879|gb|ACR27212.1| Chromosomal replication initiator protein DnaA [Burkholderia glumae
           BGR1]
          Length = 534

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 200 NPVLTFDNFVTGKANQLARAAAIQVADNPGVSYNPLFLYGGVGLGKTHLIHAIGNQLLLD 259

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           KS +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 260 KSGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 319

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 320 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 379

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 380 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 433


>gi|332882720|ref|ZP_08450331.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679222|gb|EGJ52208.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 473

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 92/273 (33%), Gaps = 47/273 (17%)

Query: 10  FFVPDKQK-NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           F +P  ++    P+    Q           + D+ +   +   A     +  + P     
Sbjct: 118 FVIPGIREITVDPQLNLHQ-----------NFDNFVEGESNRLARSAGIAVANKPGGTAF 166

Query: 67  --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDS----- 102
             + + G  G GK+ LA+                   ++K      S             
Sbjct: 167 NPLFIFGGVGLGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNNLN 226

Query: 103 ---ILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                      ++++DI  L          FHI N +HQ    +++T+   PV       
Sbjct: 227 DFIHFYQLIDVLIVDDIQFLSGKVKTQDAFFHIFNHLHQTGKQVILTSDKAPVDLFDIEQ 286

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR K     +++ PD +   K++   F      I + + AY+ + +  ++   E + 
Sbjct: 287 RLLSRFKWGLSAELTTPDYNTRYKILQNKFYTDGAEISEDIIAYLAENIRTNVRELEGVS 346

Query: 217 DKMDNLALSRGMGITRSLAAEVLKET---QQCD 246
           + +   A       +  LA  +++++    QCD
Sbjct: 347 NSLIAQAAFNRKEYSIELAQSIIEKSVKNSQCD 379


>gi|227502242|ref|ZP_03932291.1| chromosomal replication initiation protein [Corynebacterium
           accolens ATCC 49725]
 gi|227077066|gb|EEI15029.1| chromosomal replication initiation protein [Corynebacterium
           accolens ATCC 49725]
          Length = 382

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 95/255 (37%), Gaps = 36/255 (14%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72
           +     +   +   +       + +  ++ S+       AV + ++ P+     + + G 
Sbjct: 29  REAPAHDPNRETSLN----PKHTFESFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 83

Query: 73  SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110
           SG GK+ L +  +  + +                     ++S+  D ++           
Sbjct: 84  SGLGKTHLLH--AAGNYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 141

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  L+  +    + FH  N++HQ +  +++++   P         L +R +   +
Sbjct: 142 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 201

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    +++K  A     +D+ +   I  R E S+   E  + ++   +    
Sbjct: 202 TDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 261

Query: 228 MGITRSLAAEVLKET 242
             I   +A   L++ 
Sbjct: 262 EPINVEMAEIALRDL 276


>gi|78776202|ref|YP_392517.1| chromosomal replication initiation protein [Sulfurimonas
           denitrificans DSM 1251]
 gi|123768675|sp|Q30UP9|DNAA_SULDN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78496742|gb|ABB43282.1| chromosomal replication initiator protein, DnaA [Sulfurimonas
           denitrificans DSM 1251]
          Length = 435

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 100/270 (37%), Gaps = 30/270 (11%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKE---EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS 58
           N +K D S  + ++ ++ + + K    +Q           + ++ +V  + + A   + S
Sbjct: 68  NSIKVDVSILLKNQVESKKAEQKSVQKQQHSL---LNPSHTFENFMVGGSNQFAYAAVKS 124

Query: 59  WPSWPS---RVVILVGPSGSGKSCLAN----IWSDKSRSTRFSNIAKSLDSILIDTRK-- 109
                      + + G  G GK+ L      ++ ++ +   ++ + + L+  +   R   
Sbjct: 125 VSEKAGVLYNPLFIHGGVGLGKTHLMQAAGNVFQNQGKVVIYTTVEQFLNDFIRHVRNKT 184

Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH   ++      +++TA   P      
Sbjct: 185 MERFQEKYRKCDVLLIDDIQFLSNKEGIQEEFFHTFEALKGVGKQIILTADKHPKKIAGL 244

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   V  I  P+ +    +I       ++ + K +  YI   +E ++   E 
Sbjct: 245 EKRLQSRFEHGLVADIQPPELETKIAIIENKCKINKVILTKDIIHYIATVIESNVREIEG 304

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           ++ K+   +    + I       VLK+  Q
Sbjct: 305 ILSKLHAYSQLMHVDIDLQFTKNVLKDQLQ 334


>gi|262200047|ref|YP_003271255.1| chromosomal replication initiator protein DnaA [Gordonia
           bronchialis DSM 43247]
 gi|262083394|gb|ACY19362.1| chromosomal replication initiator protein DnaA [Gordonia
           bronchialis DSM 43247]
          Length = 509

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 85/235 (36%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A      +   P+     + + G SG GK+ L +  +      
Sbjct: 171 NPKYTFDTFVIGASNRFAHASAVAVSEAPARAYNPLFIWGESGLGKTHLLHA-AGHYAQR 229

Query: 92  RFSNI-----------AKSLDSILIDTRKP----------VLLEDIDLLDFND---TQLF 127
            F  +              ++S+  D R            +L++DI  L   +    + F
Sbjct: 230 LFPGMRVKYVSTEEFTNDFINSLRDDRRVAFKRRYRDVDVLLVDDIQFLMGKEGIQEEFF 289

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H     +++++   P         L +R +   +  +  PD +    ++ K   
Sbjct: 290 HTFNTLHNASKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPDLETRIAILRKKAQ 349

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              I +   +   I  ++ER++   E  + ++   A      + +SLA  VL+  
Sbjct: 350 MDNIAVPDDVLELIASKIERNIRELEGALIRVTAFASLNNAELDKSLADVVLQAL 404


>gi|163797310|ref|ZP_02191263.1| ATPase [alpha proteobacterium BAL199]
 gi|159177401|gb|EDP61957.1| ATPase [alpha proteobacterium BAL199]
          Length = 473

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 86/265 (32%), Gaps = 35/265 (13%)

Query: 6   EDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--- 62
           E      P   +++ P +       S P     +  + +V    E A             
Sbjct: 115 EPLELSTPAVFRSNDPTD-----ALSAPLDPRFTFANFVVGKPNELAFAAARRVADSETV 169

Query: 63  PSRVVILVGPSGSGKSCLANIWS----------------------DKSRSTRFSNIAKSL 100
           P   + L G  G GK+ L +  +                         R+ RF +     
Sbjct: 170 PFNPLFLYGGVGLGKTHLMHAIAWNLREKHPQRRMLYMSAEKFMYQFIRALRFKDTVAFK 229

Query: 101 DSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           D  L  +   ++++D+  +   D    + FH  N++   +  ++++A   P         
Sbjct: 230 D--LFRSVDVLMIDDVQFISGKDSTQEEFFHTFNALVDRNRQVIISADKSPNDLDGLEER 287

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SRL    V  I     +    ++       ++ I  K+  ++  ++  ++   E  ++
Sbjct: 288 LRSRLGWGLVADIHPTTYELRLGILQSKAERLEVSIPSKVLEFLAHKITSNVRELEGALN 347

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
           ++       G  IT     E L + 
Sbjct: 348 RIVAHTTLVGRPITIESTQEGLHDL 372


>gi|296115229|ref|ZP_06833870.1| chromosomal replication initiator protein DnaA [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978330|gb|EFG85067.1| chromosomal replication initiator protein DnaA [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 484

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 87/254 (34%), Gaps = 26/254 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSG 74
           ++P+  E +   + P     + D  +V    E A          PS      + L G  G
Sbjct: 134 EEPRTAEVRSDLAAPLDPRFTFDTFVVGKPNEFAYACARRVAERPSSPGFNPLFLYGGVG 193

Query: 75  SGKSCLANIW-SDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLED 115
            GK+ L +   S+  R  R S    S +  +      +                  +++D
Sbjct: 194 LGKTHLMHAIGSELVREGRVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDD 253

Query: 116 IDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +  L   D    + FH  N++      ++++A   P         L +RL    V  I  
Sbjct: 254 LQFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHA 313

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
              +    ++        + +  K+  ++  ++  ++   E  ++++   A   G  +T 
Sbjct: 314 TTFELRISILEAKATASGVEVPAKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTL 373

Query: 233 SLAAEVLKETQQCD 246
               +VL +  + +
Sbjct: 374 ETTQDVLHDILKAN 387


>gi|291558311|emb|CBL35428.1| chromosomal replication initiator protein DnaA [Eubacterium siraeum
           V10Sc8a]
          Length = 466

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 27/240 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK 87
                   + D  +V    + A     +    PS     + +    G GK+ L +    +
Sbjct: 124 ELASNYQHTFDTFIVGDNNKLAYAACKAVVQEPSTRYNPLYIYSEPGLGKTHLLSAVKSE 183

Query: 88  SRST-----RFSNIAKSLDSILIDTRK----------------PVLLEDIDLLD---FND 123
                         A +     +   +                 +L++DI  +       
Sbjct: 184 MEKLHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMANKSETQ 243

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +LFH  NS++  +  ++ T+   P         L SR +   +  I+ P+ +    +I 
Sbjct: 244 QELFHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYETRIAIIK 303

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +      + +   +  ++  +++ ++   E  + K++ L L  G   T ++A +V+++ Q
Sbjct: 304 RKAELYGMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTLNMAQQVVRDIQ 363


>gi|291531951|emb|CBK97536.1| chromosomal replication initiator protein DnaA [Eubacterium siraeum
           70/3]
          Length = 467

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 27/240 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK 87
                   + D  +V    + A     +    PS     + +    G GK+ L +    +
Sbjct: 125 ELASNYQHTFDTFIVGDNNKLAYAACKAVVQEPSTRYNPLYIYSEPGLGKTHLLSAVKSE 184

Query: 88  SRST-----RFSNIAKSLDSILIDTRK----------------PVLLEDIDLLD---FND 123
                         A +     +   +                 +L++DI  +       
Sbjct: 185 MEKLHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMANKSETQ 244

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +LFH  NS++  +  ++ T+   P         L SR +   +  I+ P+ +    +I 
Sbjct: 245 QELFHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYETRIAIIK 304

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +      + +   +  ++  +++ ++   E  + K++ L L  G   T ++A +V+++ Q
Sbjct: 305 RKAELYGMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTLNMAQQVVRDIQ 364


>gi|167751447|ref|ZP_02423574.1| hypothetical protein EUBSIR_02443 [Eubacterium siraeum DSM 15702]
 gi|167655693|gb|EDR99822.1| hypothetical protein EUBSIR_02443 [Eubacterium siraeum DSM 15702]
          Length = 467

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 27/240 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK 87
                   + D  +V    + A     +    PS     + +    G GK+ L +    +
Sbjct: 125 ELASNYQHTFDTFIVGDNNKLAYAACKAVVQEPSTRYNPLYIYSEPGLGKTHLLSAVKSE 184

Query: 88  SRST-----RFSNIAKSLDSILIDTRK----------------PVLLEDIDLLD---FND 123
                         A +     +   +                 +L++DI  +       
Sbjct: 185 MEKLHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMANKSETQ 244

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +LFH  NS++  +  ++ T+   P         L SR +   +  I+ P+ +    +I 
Sbjct: 245 QELFHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYETRIAIIK 304

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +      + +   +  ++  +++ ++   E  + K++ L L  G   T ++A +V+++ Q
Sbjct: 305 RKAELYGMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTLNMAQQVVRDIQ 364


>gi|126730156|ref|ZP_01745968.1| chromosomal replication initiation protein [Sagittula stellata
           E-37]
 gi|126709536|gb|EBA08590.1| chromosomal replication initiation protein [Sagittula stellata
           E-37]
          Length = 459

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 32/265 (12%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVI 68
           +P+ ++     ++++QL  + P  +  + D  +V    E A                 + 
Sbjct: 98  IPEAEQAPVTSSRDQQLPGA-PLDMRFTFDTFVVGKPNELAHAAARRVAEGGPVTFNPLF 156

Query: 69  LVGPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDS------------------ILIDTR 108
           L G  G GK+ L +   W    R+   + +  S +                    +  + 
Sbjct: 157 LYGGVGLGKTHLMHAIAWELSQRNPGLTVLYLSAEQFMYRFVQALRERKMMDFKEMFRSV 216

Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             ++++D+  +   D    + FH  N++   +  ++++A   P         + SRL++ 
Sbjct: 217 DVLMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPDEIKDLENRIRSRLQSG 276

Query: 166 TVVKISLPDDDFLEKVIVKMFADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
            VV +   D +    ++             + ID  +  ++  R+  ++   E  + ++ 
Sbjct: 277 LVVDLHPTDYELRLGILQSKVEVYRGMHPGLQIDDGVLEFLAHRISTNVRVLEGALTRLF 336

Query: 221 NLALSRGMGITRSLAAEVLKETQQC 245
             A   G  I   L  + L +  + 
Sbjct: 337 AFASLVGKPINMDLVQDSLADVLRA 361


>gi|317011662|gb|ADU85409.1| chromosomal replication initiation protein [Helicobacter pylori
           SouthAfrica7]
          Length = 455

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H  +  +++ +   P +       L SR +     KI  PD +    ++ +     
Sbjct: 228 FNELHANNKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKIMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           QI + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 QIILPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPINLNLAKTVLEDLQK 342


>gi|260437689|ref|ZP_05791505.1| DNA replication initiator protein, ATPase [Butyrivibrio crossotus
           DSM 2876]
 gi|292809915|gb|EFF69120.1| DNA replication initiator protein, ATPase [Butyrivibrio crossotus
           DSM 2876]
          Length = 450

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 85/276 (30%), Gaps = 36/276 (13%)

Query: 2   NLMKEDYSFFV---PDKQKNDQ----PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54
           N     Y       PD          P      L          + +  +V      A  
Sbjct: 71  NFFDHSYDVRFISTPDLANPQPVVKEPVESLNSLIIKAGLNPKYTFETFVVGDNNNFAHA 130

Query: 55  LIDSWPSWPS---RVVILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILI 105
              +    P      + L G  G GK+ L           + S    +       + ++ 
Sbjct: 131 ASLAVAESPGDTYNPLFLYGGVGLGKTHLMQAIGNYIIKQNPSLKVMYVTSEIFTNELIE 190

Query: 106 D-----------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145
                                 +L++DI  +   +    + FH  N++ +    +++++ 
Sbjct: 191 SIKTEKNTSNKNFREKYRNVDVLLIDDIQFIIGKESTQDEFFHTFNTLREAKKQVIISSD 250

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P  +      L SR     +V IS P+ +    ++ K        ID  +  YI   +
Sbjct: 251 RPPKDFETLEDRLKSRFTNGLLVDISPPNYETRMAILHKKGEIEGYNIDMDVLEYIATNI 310

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + ++   E  + K+   +      I  SLA EVL++
Sbjct: 311 KSNIRELEGSLTKLVAFSKFSKKPINVSLAEEVLRD 346


>gi|38232643|ref|NP_938410.1| chromosomal replication initiation protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|61212619|sp|Q6NKL7|DNAA_CORDI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|38198901|emb|CAE48512.1| chromosomal replication initiator protein [Corynebacterium
           diphtheriae]
          Length = 552

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 88/241 (36%), Gaps = 30/241 (12%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
               + D  +V  +       A  + +  P+     + + G SG GK+ L +   + ++ 
Sbjct: 213 NPRYTFDTYVVSDSNKLPWSAAWAVAEK-PARAYNPLFIWGDSGLGKTHLMHAIGNYAQE 271

Query: 91  T----------RFSNIAKSLDSILIDTRKP----------VLLEDIDLLDFND---TQLF 127
                              ++S+  D ++           ++++DI  L   +    + F
Sbjct: 272 LDPKLKVKYVSSEEFTNDYINSVRDDRQEAFKRRYRDLDILMVDDIQFLQGKEGTQEEFF 331

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ Q D  +++++   P         L +R ++  +  I  PD +    +++   +
Sbjct: 332 HTFNALQQADKQIVLSSDRPPKQLTTLEDRLRTRFQSGLIADIYPPDLETRIAILLNKAS 391

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET--QQC 245
              I  D+ +   I  R   S+   E    ++   A      I  + A E L++   +Q 
Sbjct: 392 AEGITADRDVLELIASRFNASIRELEGAFIRVSAYASLNEAPINMATAQEALRDMMPEQA 451

Query: 246 D 246
           D
Sbjct: 452 D 452


>gi|254496740|ref|ZP_05109599.1| chromosomal replication initiator protein DnaA [Legionella
           drancourtii LLAP12]
 gi|254354035|gb|EET12711.1| chromosomal replication initiator protein DnaA [Legionella
           drancourtii LLAP12]
          Length = 458

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 85/232 (36%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87
               +  +  ++ + A      +   P      + + G  G GK+ L +   ++      
Sbjct: 126 KFLFESFVEGNSNQLARAASMQVAERPGDAYNPLFIYGGVGLGKTHLMHAIGNEILRNNP 185

Query: 88  -------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFHII 130
                        +++ K+L +  I+       +   +L++DI        +  + FH  
Sbjct: 186 EAKILYLHSERFVADMVKALQTNSINEFKRFYRSLNALLIDDIQFFAGKDRSQEEFFHTF 245

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++ +    +++T+  +P         L SR      V +  P+ +    +++       
Sbjct: 246 NALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVAILISKAEQSN 305

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I +  ++A +I +R+  ++   E  + ++   A   G  IT     E L++ 
Sbjct: 306 IELPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPITIEFVHEALRDL 357


>gi|119947308|ref|YP_944988.1| chromosomal replication initiator protein DnaA [Psychromonas
           ingrahamii 37]
 gi|166214694|sp|A1T0X4|DNAA_PSYIN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|119865912|gb|ABM05389.1| chromosomal replication initiator protein DnaA [Psychromonas
           ingrahamii 37]
          Length = 458

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 76/233 (32%), Gaps = 27/233 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS--- 90
             + D+ +   +   A+         P      + L    G GK+ L +   +   +   
Sbjct: 125 KYTFDNFVEGKSNNFAIATTQQIAENPGDVYNPLFLYAHPGLGKTHLLHAVGNAILAENP 184

Query: 91  -----------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHII 130
                                N           +   +L++DI        +   LF   
Sbjct: 185 ESKVVYIRSERFVQDMINSIRNNTIEQFKEYYASLDALLIDDIHFFAGKDRSQEVLFQTF 244

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           NS+      +++T+  FP         L +R      + I  P+ +    +++    +R 
Sbjct: 245 NSMLDAHQQVILTSDRFPKEIEGIDERLRTRFGWGLSIPIDPPELETRVAILITKAEERG 304

Query: 191 IFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +   +A +I +R+    +   E  +  +   A   G GIT SL  + L++ 
Sbjct: 305 LKLPDDVAFFIAKRLTITDVRVLEGAIANISAKAQFTGQGITISLVQDALRDM 357


>gi|302870732|ref|YP_003839368.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573591|gb|ADL41382.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 454

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 91/257 (35%), Gaps = 36/257 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI----DSWPSW-PSRVVIL 69
           K K D+      QL          + +  +V +    A        ++ P       + +
Sbjct: 99  KSKQDEKLEIVTQL------NPKYTFETFVVGNNNRLAHAAALAVAETPPGERTYNPLFI 152

Query: 70  VGPSGSGKSCLANIWSDK------------------SRSTRFSNIAKSLDSILIDTRKP- 110
            G  G GK+ L +                       +     +   +  D   +  R   
Sbjct: 153 YGGVGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVD 212

Query: 111 -VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI  L   +    + FH  N++++ +  +++++   P         L SR +   
Sbjct: 213 VLLIDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGL 272

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--L 224
           +  I  PD +    ++ K        + + +  +I  ++E ++   E  ++K+   +  +
Sbjct: 273 ITDIQPPDFETRIAILSKKCQLEGTPVPQHILEFIASKIETNIRELEGALNKILAYSKLM 332

Query: 225 SRGMGITRSLAAEVLKE 241
           +    IT  LA + LKE
Sbjct: 333 APDKEITLELAEKALKE 349


>gi|162147555|ref|YP_001602016.1| chromosomal replication initiator protein dnaA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786132|emb|CAP55714.1| putative chromosomal replication initiator protein dnaA
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 487

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 26/242 (10%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIW- 84
            + P     + D  +V    E A          PS      + L G  G GK+ L +   
Sbjct: 148 LAAPLDPRFTFDTFVVGKPNEFAYACARRVAERPSSPGFNPLFLYGGVGLGKTHLMHAIG 207

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLL---DFND 123
           S+  R    S    S +  +      +                  +++D+  L   D   
Sbjct: 208 SELVRGGAVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDDLQFLIGKDNTQ 267

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++      ++++A   P         L +RL    V  I     +    ++ 
Sbjct: 268 EEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRISILE 327

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
              A   + +  K+  ++  ++  ++   E  ++++   A   G  +T     +VL +  
Sbjct: 328 SKAAASGVAVPAKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTLEATQDVLHDIL 387

Query: 244 QC 245
           + 
Sbjct: 388 KA 389


>gi|159045913|ref|YP_001534707.1| chromosomal replication initiation protein [Dinoroseobacter shibae
           DFL 12]
 gi|157913673|gb|ABV95106.1| chromosomal replication initiation protein [Dinoroseobacter shibae
           DFL 12]
          Length = 460

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 88/244 (36%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P    ++  + +V    E A                 + L G  G GK+ L +   W  +
Sbjct: 119 PLDPRLTFSNFVVGKPNELAHASARRVAEGGPVSFNPLFLYGGVGLGKTHLMHAIAWEAQ 178

Query: 88  SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFNDT---QL 126
           +R+     +  S +                    L  +   ++++D+  +   D+   + 
Sbjct: 179 ARNPGLKVLYLSAEQFMYRFVRALRDRNTMEFKELFRSVDLLMVDDVQFIAGKDSTQDEF 238

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL    VV I   D +    V+ +  
Sbjct: 239 FHTFNALVDQNKQIIISADRAPGEIDGLEDRIKSRLSCGLVVDIHPTDYELRLGVLQQRL 298

Query: 187 ADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            D+      I ++  +   + QR+  ++   E  ++++   +   G  IT  LA E L +
Sbjct: 299 QDQIAAGETIAVEDGVLECLAQRISTNVRVLEGALNRLIAFSDLVGRRITLDLAHEALSD 358

Query: 242 TQQC 245
             + 
Sbjct: 359 LIRA 362


>gi|307728077|ref|YP_003905301.1| chromosomal replication initiator protein DnaA [Burkholderia sp.
           CCGE1003]
 gi|307582612|gb|ADN56010.1| chromosomal replication initiator protein DnaA [Burkholderia sp.
           CCGE1003]
          Length = 537

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 203 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 262

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 263 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 322

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 323 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 382

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +++ +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 383 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 436


>gi|322412915|gb|EFY03822.1| chromosomal replication initiation protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 451

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 92/281 (32%), Gaps = 43/281 (15%)

Query: 4   MKEDYSF---FVPDKQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL 55
           +  DY F    + D+ +    +   +Q+    P            ++ +       AV  
Sbjct: 74  IAVDYVFEEDLINDQNQTPNSQGYNQQVITPLPAVTSDLNPKYRFENFIQGDENRWAVAA 133

Query: 56  ---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS------------------RSTRFS 94
              + + P      + + G  G GK+ L N   +                          
Sbjct: 134 SIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIH 193

Query: 95  NIAKSLDSILIDTRKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTF 147
               ++D +    R    +L++DI  L          + F+  N++H  +  +++T+   
Sbjct: 194 IRLDTMDELKEKFRNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRT 253

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P         L +R K    V I+ PD +    ++     +      +    Y+  + + 
Sbjct: 254 PDHLNDLEDRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDS 313

Query: 208 SLVFAEKLVDKMDNLALSRGMG----ITRSLAAEVLKETQQ 244
           ++   E  +  +   +L         IT  +AAE ++  +Q
Sbjct: 314 NVRDLEGALKDI---SLVANFKQIDTITVDIAAEAIRARKQ 351


>gi|255324008|ref|ZP_05365133.1| chromosomal replication initiator protein DnaA [Corynebacterium
           tuberculostearicum SK141]
 gi|255298865|gb|EET78157.1| chromosomal replication initiator protein DnaA [Corynebacterium
           tuberculostearicum SK141]
          Length = 545

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 96/255 (37%), Gaps = 36/255 (14%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72
           +     +   +   +       + D  ++ S+       AV + ++ P+     + + G 
Sbjct: 192 REAPAHDPNRETSLN----PKHTFDSFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 246

Query: 73  SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110
           SG GK+ L +  +  + +                     ++S+  D ++           
Sbjct: 247 SGLGKTHLLH--AAGNYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 304

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  L+  +    + FH  N++HQ +  +++++   P         L +R +   +
Sbjct: 305 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 364

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    +++K  A+    +D+ +   I  R E S+   E  + ++   +    
Sbjct: 365 TDIQPPDLETRIAILMKKAANDGTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 424

Query: 228 MGITRSLAAEVLKET 242
             I   +A   L++ 
Sbjct: 425 EPINVEMAEIALRDL 439


>gi|251781469|ref|YP_002995770.1| chromosomal replication initiation protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390097|dbj|BAH80556.1| chromosomal replication initiator protein dnaA [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|323126260|gb|ADX23557.1| chromosomal replication initiation protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 451

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 89/268 (33%), Gaps = 40/268 (14%)

Query: 14  DKQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65
           D+ +    ++  +Q+    P          S ++ +       AV     + + P     
Sbjct: 87  DQNQIPNSQSYNQQVITPLPAVTSDLNPKYSFENFIQGDENRWAVAASIAVANTPGTTYN 146

Query: 66  VVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDT 107
            + + G  G GK+ L N   +                              ++D +    
Sbjct: 147 PLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKF 206

Query: 108 RKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           R    +L++DI  L          + F+  N++H  +  +++T+   P         L +
Sbjct: 207 RNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVT 266

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R K    V I+ PD +    ++     +      +    Y+  + + ++   E  +  + 
Sbjct: 267 RFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI- 325

Query: 221 NLALSRGMG----ITRSLAAEVLKETQQ 244
             +L         IT  +AAE ++  +Q
Sbjct: 326 --SLVANFKQIDTITVDVAAEAIRARKQ 351


>gi|229826864|ref|ZP_04452933.1| hypothetical protein GCWU000182_02248 [Abiotrophia defectiva ATCC
           49176]
 gi|229788482|gb|EEP24596.1| hypothetical protein GCWU000182_02248 [Abiotrophia defectiva ATCC
           49176]
          Length = 457

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 42/280 (15%)

Query: 6   EDYSFFVPDKQKNDQ---PKNKEEQL---FFSFPRCLGISRDDLLVHSAI----EQAVRL 55
           + Y+     K++ D     K++  QL     S       + D  +V          A+ +
Sbjct: 78  KSYNLKFISKEELDSYNTEKSENNQLRERAASANLNPNYTFDTFVVGDNNRLVTAAAISV 137

Query: 56  IDSW-PSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK 109
            ++   +W    + + G  G GK+ L +     I  +++ +      ++   + +I+  K
Sbjct: 138 AENPGTNW--NPLFIYGGVGLGKTHLMHSIAHYILENQADARVLYVTSEQFTNEVIEAIK 195

Query: 110 -----------------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPV 149
                             +L++DI  +      + + FH  N ++Q    +++++   P 
Sbjct: 196 EGVLASKEFRKKYRNIDALLIDDIQFVIGKERTEEEFFHTFNELYQAGKRIIISSDRPPK 255

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME--- 206
            +      + SR  +  + +I+ PD +    ++ K        +  ++  YI   +    
Sbjct: 256 DFTDIEDRIKSRFGSGMLSEINPPDYETRMAILKKRCELENENLSDEILDYIATNVNSNI 315

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           R L  A K V  ++ L ++     T  +A   LK+    +
Sbjct: 316 RELEGAYKKVTALNKL-VNVNTEATLDIAKNALKDIINPN 354


>gi|209542189|ref|YP_002274418.1| chromosomal replication initiator protein DnaA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529866|gb|ACI49803.1| chromosomal replication initiator protein DnaA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 477

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 26/242 (10%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIW- 84
            + P     + D  +V    E A          PS      + L G  G GK+ L +   
Sbjct: 138 LAAPLDPRFTFDTFVVGKPNEFAYACARRVAERPSSPGFNPLFLYGGVGLGKTHLMHAIG 197

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLL---DFND 123
           S+  R    S    S +  +      +                  +++D+  L   D   
Sbjct: 198 SELVRGGAVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDDLQFLIGKDNTQ 257

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++      ++++A   P         L +RL    V  I     +    ++ 
Sbjct: 258 EEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRISILE 317

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
              A   + +  K+  ++  ++  ++   E  ++++   A   G  +T     +VL +  
Sbjct: 318 SKAAASGVAVPAKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTLEATQDVLHDIL 377

Query: 244 QC 245
           + 
Sbjct: 378 KA 379


>gi|62185088|ref|YP_219873.1| chromosomal replication initiation protein [Chlamydophila abortus
           S26/3]
 gi|62148155|emb|CAH63912.1| chromosomal replication initiator protein [Chlamydophila abortus
           S26/3]
          Length = 460

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 34/238 (14%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
               ++  + LV    +   R++       +    +P   + L GP GSGK+ L     +
Sbjct: 104 VNPEMTFANFLVTPENDLPFRILQEFTKPSEDATGFPFNPIYLFGPEGSGKTHLMQAAVN 163

Query: 87  ---KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDF---NDTQ 125
              +S        +      L+   +                + +EDI++         +
Sbjct: 164 VLRESGGKILYVASDLFTEHLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSGKGATQEE 223

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+      +++++   P         L SR +    V I     + L   +++ 
Sbjct: 224 FFHTFNSLQTEGKLIVISSAYAPADLKAMEERLISRFEWGVAVLIHPLTKEGLRSFLMRQ 283

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                I I+     +++  +  ++      +  +            + L  ++L E  
Sbjct: 284 TEQLSIRIEDSALDFLIHALSSNMKALLHALTLL------SKRVAYKKLTQQLLYEDD 335


>gi|304439078|ref|ZP_07398997.1| DNA-directed DNA replication initiator protein [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372437|gb|EFM26024.1| DNA-directed DNA replication initiator protein [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 447

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 82/237 (34%), Gaps = 30/237 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIW--- 84
                 ++ +V  + E A           ++  +  S  + + G  G GK+ L       
Sbjct: 108 NPKYIFENFIVGKSNEFAHAASLAAAESYENPEAAHSNPLFIYGGVGLGKTHLMQAIGHF 167

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---T 124
                         S++  +    +I    +       + V   L++DI  +   +    
Sbjct: 168 VLQQDISKKVLYVTSEQFMNELIDSIKNGRNEEFRRKYRSVDLLLIDDIQFIADKESTQE 227

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++H  +  +++T+   P         L SR     VV I  PD +    ++  
Sbjct: 228 EFFHTFNALHGANKQIVLTSDKPPKDIKSLKERLVSRFAWGLVVDIGPPDLETRIAILRA 287

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                   + + +  YI + +  ++   E  + ++   +      IT  +A + +K+
Sbjct: 288 KSDSEGFDVPENVINYIAENVRSNIRELEGALTRVKAFSKLTKGVITEDIAKQAIKD 344


>gi|126660126|ref|ZP_01731245.1| chromosomal replication initiation protein [Cyanothece sp. CCY0110]
 gi|126618569|gb|EAZ89319.1| chromosomal replication initiation protein [Cyanothece sp. CCY0110]
          Length = 456

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 82/257 (31%), Gaps = 42/257 (16%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71
             K D+   K  QL          +    +V      A     +    P R    + L G
Sbjct: 103 NNKTDKQSPKLSQL------NPHYNFSRFVVGPTNRMAHAASLAVAESPGREFNPLFLCG 156

Query: 72  PSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILI---------------DTRKPV 111
             G GK+ L    +         +  F    +   + LI                T   +
Sbjct: 157 GVGLGKTHLMQAIAHYRLELYPNANVFYVSTEQFTNDLITSIRQDSMEHFREHYRTADIL 216

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATV 167
           L++DI  ++  +    + FH  N++H+    +++ +   P      L D L SR     +
Sbjct: 217 LVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKRIP-SLQDRLVSRFSMGLI 275

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLA 223
             I +PD +    ++ K      I + + +  YI        R L     + V  +    
Sbjct: 276 ADIQVPDLETRMAILQKKAEYENIVLPRDVIEYIATNYTSNIRELEGALIRAVTYISISG 335

Query: 224 LSRGMGITRSLAAEVLK 240
           LS     T    A VL 
Sbjct: 336 LSM----TVENIAPVLN 348


>gi|52840257|ref|YP_094056.1| chromosomal replication initiation protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|54292965|ref|YP_125380.1| chromosomal replication initiator protein DnaA [Legionella
           pneumophila str. Lens]
 gi|54295984|ref|YP_122353.1| chromosomal replication initiation protein [Legionella pneumophila
           str. Paris]
 gi|148358140|ref|YP_001249347.1| chromosomal replication initiator protein DnaA [Legionella
           pneumophila str. Corby]
 gi|296105498|ref|YP_003617198.1| chromosomal replication initiator protein DnaA [Legionella
           pneumophila 2300/99 Alcoy]
 gi|61212502|sp|Q5X0L8|DNAA_LEGPL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61212504|sp|Q5X990|DNAA_LEGPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61212515|sp|Q5ZZK8|DNAA_LEGPH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166214678|sp|A5I9F1|DNAA_LEGPC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|52627368|gb|AAU26109.1| chromosomal replication initiator protein DnaA [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53749769|emb|CAH11149.1| Chromosomal replication initiator protein DnaA [Legionella
           pneumophila str. Paris]
 gi|53752797|emb|CAH14231.1| Chromosomal replication initiator protein DnaA [Legionella
           pneumophila str. Lens]
 gi|148279913|gb|ABQ54001.1| chromosomal replication initiator protein DnaA [Legionella
           pneumophila str. Corby]
 gi|295647399|gb|ADG23246.1| chromosomal replication initiator protein DnaA [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 452

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 84/232 (36%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD------- 86
               D  +  ++ + A      +   P      + + G  G GK+ L +   +       
Sbjct: 120 KFVFDSFVEGNSNQLARAASMQVAERPGDAYNPLFIYGGVGLGKTHLMHAIGNSILKNNP 179

Query: 87  ------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFHII 130
                        +++ K+L +  I+       +   +L++DI        +  + FH  
Sbjct: 180 EAKVLYLHSERFVADMVKALQTNSINEFKRFYRSLNALLIDDIQFFAGKDRSQEEFFHTF 239

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++ +    +++T+  +P         L SR      V +  P+ +    +++       
Sbjct: 240 NALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVAILISKAEQSN 299

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I +  ++A +I +R+  ++   E  + ++   A   G  IT     E L++ 
Sbjct: 300 IELPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPITIEFVHEALRDL 351


>gi|23097456|ref|NP_690922.1| chromosomal replication initiation protein [Oceanobacillus
           iheyensis HTE831]
 gi|38257607|sp|Q8EU88|DNAA_OCEIH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|22775679|dbj|BAC11957.1| chromosomal replication initiation protein [Oceanobacillus
           iheyensis HTE831]
          Length = 447

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 95/267 (35%), Gaps = 36/267 (13%)

Query: 10  FFVPD---KQKNDQPKNKEEQLFFSFPRCLG------ISRDDLLVHSAIEQAVRLIDSWP 60
           F +PD   + +  +P  K +Q                 + D  ++ +    A     +  
Sbjct: 78  FIIPDSLEEIEEQKPMPKPKQ-STDTGDSPKSMLNSKYTFDTFVIGAGNRFAHAASLAVA 136

Query: 61  SWPSRV---VILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDTR---- 108
             P++    + + G  G GK+ L +      R     +      ++   +  I+      
Sbjct: 137 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVRDHNPNAKVVYLTSEKFTNEFINAIMDNK 196

Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  +   +    + FH  N++H     +++++   P      
Sbjct: 197 SNHFRNKYRNIDVLLIDDIQFIAGKESTQEEFFHTFNALHGESKQIIISSDRPPKEIPTL 256

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR +   +  I+ PD +    ++ K      + I  ++  YI  ++  ++   E 
Sbjct: 257 EDRLRSRFEWGLITDITPPDLETRIAILNKKAKAEGLDIPNEVMLYIANQINTNIRELEG 316

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241
            + ++   +      I  SLAA+ LK+
Sbjct: 317 ALIRVVAYSSLVNQDIDASLAADALKD 343


>gi|170694069|ref|ZP_02885225.1| chromosomal replication initiator protein DnaA [Burkholderia
           graminis C4D1M]
 gi|170141141|gb|EDT09313.1| chromosomal replication initiator protein DnaA [Burkholderia
           graminis C4D1M]
          Length = 542

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 208 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 267

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 268 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 327

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 328 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 387

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +++ +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 388 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 441


>gi|78187975|ref|YP_376018.1| chromosomal replication initiation protein [Chlorobium luteolum DSM
           273]
 gi|78167877|gb|ABB24975.1| chromosomal replication initiator protein DnaA [Chlorobium luteolum
           DSM 273]
          Length = 489

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 83/256 (32%), Gaps = 32/256 (12%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVIL 69
            K      ++ E    F        + D L+       A     S    P       +++
Sbjct: 133 GKADRAFERDVER---FETHLNSKYTFDTLIRGDCNSLAFAAAKSVAQNPGQNAFNPLVI 189

Query: 70  VGPSGSGKSCLANIW-------SDKSRSTRFSNIAKSLDSILIDTRK------------- 109
            G  G GK+ +            D S+    S+   ++D +                   
Sbjct: 190 YGGVGLGKTHIMQAIGNTVRESRDASKVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRNID 249

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            ++++DI      +    ++FHI N++HQ +  ++++A             L SR     
Sbjct: 250 VLIIDDIQFFSGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKDIKGIEDRLISRFNWGL 309

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALS 225
              I  PD +  + +I+       +  D+ +  +I   +  ++   E  +V  +   +L 
Sbjct: 310 SADIQPPDYETRKAIILSKLHQSGVNFDENVIEFIANNVTDNVRELEGCIVKLLAAQSLD 369

Query: 226 RGMGITRSLAAEVLKE 241
               I        LK+
Sbjct: 370 -KREIDLQFTKSTLKD 384


>gi|326329129|ref|ZP_08195457.1| putative replication initiator protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325953016|gb|EGD45028.1| putative replication initiator protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 575

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 87/240 (36%), Gaps = 26/240 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
                     + +  ++ S+      A   +   P      +++ G SG GK+ L +   
Sbjct: 229 VLETRLNPKYTFETFVIGSSNRFPHAAAVAVSEAPGKAYNPLLVYGESGLGKTHLLHAIG 288

Query: 86  DKSRS------TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF---N 122
              RS       R+ +  +  +  +   R                +L++DI  L+     
Sbjct: 289 HYVRSLYSGAKVRYVSSEEFTNEFINAIRDDRQDRFKRRYRDVDVLLIDDIQFLEGKTQT 348

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N++H  +  +++T+   P         L +R +   +  +  PD +    ++
Sbjct: 349 QEEFFHTFNTLHNANKQIVLTSDRPPKRLEALEDRLRNRFEWGLITDVQPPDIETRIAIL 408

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            K  A  ++     +  +I  +++ ++   E  + ++   A      +  +LA  VLK+ 
Sbjct: 409 RKKAAMERLTAPPDVLEFIASKIQTNIRELEGALIRVTAFANLNRQDVDLTLAEIVLKDL 468


>gi|148552930|ref|YP_001260512.1| chromosomal replication initiation protein [Sphingomonas wittichii
           RW1]
 gi|148498120|gb|ABQ66374.1| chromosomal replication initiator protein DnaA [Sphingomonas
           wittichii RW1]
          Length = 477

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 82/241 (34%), Gaps = 27/241 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P     + D  +V  A E A     +           + L G +G GK+ L +    +  
Sbjct: 140 PLEARYTFDSYVVGKANEVAYNAARTLAEGGKLVFNPLFLHGGTGLGKTHLMHAIGHEYL 199

Query: 90  STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126
           + +       + +                      +     ++++D+  +   +    + 
Sbjct: 200 ARQPGAKVVYMSAEKFMFEFVSAMRAKDTFSFKQRLRAADVLMIDDVQFIAGKESTQEEF 259

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF-LEKVIVKM 185
           FH +N +      L+++A   P         + SRL    V  ++  D +  L  ++ K+
Sbjct: 260 FHTMNELISAGRRLVISADRSPQDLDGIESRILSRLSWGLVADVNPADFELRLNILMRKL 319

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
               Q  + + +  ++ +R+  ++   E  ++++   A   G  +        L +  + 
Sbjct: 320 QGMPQAQVPQDVVMFLARRISANVRELEGALNRVVAYAALSGKPVDIDFTQATLADILRA 379

Query: 246 D 246
           +
Sbjct: 380 N 380


>gi|116332682|ref|YP_794209.1| DNA replication ATPase initiation [Lactobacillus brevis ATCC 367]
 gi|122270622|sp|Q03UE4|DNAA_LACBA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|116098029|gb|ABJ63178.1| DNA replication ATPase initiation [Lactobacillus brevis ATCC 367]
          Length = 452

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++    + A      +   P      +   G  G GK+ L +   +K    
Sbjct: 117 NSRYTFDTFVIGKGNQMAHAAALVVSEEPGVMYNPLFFYGGVGLGKTHLMHAIGNKMLED 176

Query: 92  R-----------------FSNIAKSLDSILIDTRK---PVLLEDIDLLD---FNDTQLFH 128
           R                  + I            +    +L++DI           + FH
Sbjct: 177 RPDTKVKYVTSEAFTNDFINAIQTRTQEQFRQEYRNVDLLLVDDIQFFANKEGTQEEFFH 236

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N+++     +++T+   P      L D L SR      V I+ PD +    ++     
Sbjct: 237 TFNALYDDGKQIVLTSDRLPNEIP-KLQDRLVSRFAWGLSVDITPPDLETRIAILRNKAD 295

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             QI I     +YI  +++ ++   E  + ++   +      I   LAAE LK  
Sbjct: 296 ADQIDIPDDTLSYIAGQIDSNVRELEGALARVQAYSQLMHQPIATDLAAEALKSL 350


>gi|307565813|ref|ZP_07628274.1| chromosomal replication initiator protein DnaA [Prevotella amnii
           CRIS 21A-A]
 gi|307345437|gb|EFN90813.1| chromosomal replication initiator protein DnaA [Prevotella amnii
           CRIS 21A-A]
          Length = 467

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 83/236 (35%), Gaps = 29/236 (12%)

Query: 39  SRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCL-------------- 80
           S ++ +   + +  +     + +         + + GPSG GK+ L              
Sbjct: 135 SFNNYVEGDSNKMPLTIGLAIAEHPNKNQFNPLFVYGPSGCGKTHLINAIGLKIKKLYPQ 194

Query: 81  -------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQLFHII 130
                  A ++  +  ++  +N           T   +L++DI             FHI 
Sbjct: 195 KRVLYVSARLFQVQYTNSVRTNTTNDF-IHFYQTIDILLVDDIQEWMTATKTQDTFFHIF 253

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N + +    +++ +   PV        L +R KA  + ++  P+      ++        
Sbjct: 254 NHLSRNGKRIILASDRPPVDLRGMNDRLLTRFKAGLITELEKPNIQLCIDILHNKIKRDG 313

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + I + +  +I Q    S+   + +++ +   ++     +  +LA  V+K   + D
Sbjct: 314 LIIPEDVIQFIAQTANGSVRDLQGVINSLLAYSVVYNSAVDMNLAERVIKRAVKID 369


>gi|91774357|ref|YP_544113.1| chromosomal replication initiator protein DnaA [Methylobacillus
           flagellatus KT]
 gi|123380248|sp|Q1GXK1|DNAA_METFK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|91708344|gb|ABE48272.1| chromosomal replication initiator protein DnaA [Methylobacillus
           flagellatus KT]
          Length = 470

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 97/265 (36%), Gaps = 27/265 (10%)

Query: 4   MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           + +      P K  +  PK K + L  +         D+ +   A + A          P
Sbjct: 106 ISKVTKTVSPAKPASAAPK-KPKTLTETSGLNPAFRFDNFVTGKANQLARAAAIQVAENP 164

Query: 64  S---RVVILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSLDSILID- 106
                 + + G  G GK+ +     +                    S++ K+ +    D 
Sbjct: 165 GTAYNPLFIYGGVGLGKTHVLQAIGNHLKSQRPDAKIRYLHAERYVSDVVKAYEHKAFDE 224

Query: 107 ------TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                 +   +L++DI           + F+  NS+ +    +++T  T+P         
Sbjct: 225 FKRQYHSLDLLLIDDIQFFAKKSRTQEEFFYAFNSLIEAKKQIIITCDTYPKEIADVDER 284

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L +R      V +  P+ +    +++K     ++ +D+ +A +I +++  S+   E  ++
Sbjct: 285 LRTRFSWGLTVAVEPPELEMRVAILLKKAEAARVTLDEDVAFFIAKQVRSSVRELEGALN 344

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
           ++  +A   G  I  SLA E LK+ 
Sbjct: 345 RIIAMANFTGHAIDVSLAKEALKDL 369


>gi|225025478|ref|ZP_03714670.1| hypothetical protein EIKCOROL_02378 [Eikenella corrodens ATCC
           23834]
 gi|224941762|gb|EEG22971.1| hypothetical protein EIKCOROL_02378 [Eikenella corrodens ATCC
           23834]
          Length = 510

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 83/252 (32%), Gaps = 30/252 (11%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGP 72
           ++ ++ + +  Q           + D L+       AV    S    P        L G 
Sbjct: 161 KREERQQQRYAQTNL----SPEYTFDTLVEGKGNRLAVAAARSIAENPGKNYNPFFLYGS 216

Query: 73  SGSGKSCLANI-----------------WSDKSRSTRFSNIAKSLDSILIDTRKP---VL 112
           +G GK+ LA                    ++                      KP   ++
Sbjct: 217 TGLGKTHLAQAVGNELLRLKPEAKVYYMHAEDFVRGMIQAFRNHAHDAFRQQYKPYDFLI 276

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  +   D    + FH+ N  H +   +++T    P         L SR      ++
Sbjct: 277 IDDIQFIKGKDRSMEEFFHLYNHCHHHKKQIILTCDVLPTKIDDMDDRLKSRFSWGLTLE 336

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           +  P+ +   +++ K      + + ++ A +I   +  ++   E    +++  +      
Sbjct: 337 LEPPELEMRVEILQKKADSVGVELKEEAAFFIATHIRSNVRELEGAFKRVEARSRFEHKP 396

Query: 230 ITRSLAAEVLKE 241
           I   LA E L++
Sbjct: 397 IDVELATEALQD 408


>gi|304405889|ref|ZP_07387547.1| chromosomal replication initiator protein DnaA [Paenibacillus
           curdlanolyticus YK9]
 gi|304345132|gb|EFM10968.1| chromosomal replication initiator protein DnaA [Paenibacillus
           curdlanolyticus YK9]
          Length = 448

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 97/269 (36%), Gaps = 34/269 (12%)

Query: 7   DYSFFVPDKQ--KNDQPKNKEEQLFF----SFPR--CLGISRDDLLVHSAIEQAVRLIDS 58
           D  F + + +  +  QP     Q+       F        + D  ++ +    A     +
Sbjct: 75  DVKFIIEENRAPEPAQPLPVAVQVPVASDEPFTHLLNPKYTFDTFVIGANNRFAHAASLA 134

Query: 59  WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98
               P++    + L G  G GK+ L +                   S+K  +   + I  
Sbjct: 135 VAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYILDHNPSTKVMYISSEKFTNEFINAIRD 194

Query: 99  SLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +      +  + +   L++DI  L   D    + FH  N++H+    +++++   P    
Sbjct: 195 NRGESFRNKYRNIDVLLIDDIQFLAGKDGTQEEFFHTFNALHEERKQIIISSDRTPKEIP 254

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L SR +   +  I  PD +    ++ K      + I  +   YI  +++ ++   
Sbjct: 255 TLEERLRSRFEWGLITDIQAPDLETRIAILRKKAKAENLEIPNEAMVYIANQIDTNIREL 314

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           E  + ++   +      I+  LAAE LK+
Sbjct: 315 EGALIRVVAYSSLINEDISSHLAAEALKD 343


>gi|311741699|ref|ZP_07715521.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303220|gb|EFQ79301.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 545

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 96/255 (37%), Gaps = 36/255 (14%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72
           +     +   +   +       + D  ++ S+       AV + ++ P+     + + G 
Sbjct: 192 REAPAHDPNRETSLN----PKHTFDSFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 246

Query: 73  SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110
           SG GK+ L +  +  + +                     ++S+  D ++           
Sbjct: 247 SGLGKTHLLH--AAGNYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 304

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  L+  +    + FH  N++HQ +  +++++   P         L +R +   +
Sbjct: 305 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 364

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    +++K  A+    +D+ +   I  R E S+   E  + ++   +    
Sbjct: 365 TDIQPPDLETRIAILMKKAANDGTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 424

Query: 228 MGITRSLAAEVLKET 242
             I   +A   L++ 
Sbjct: 425 EPINVEMAEIALRDL 439


>gi|319940693|ref|ZP_08015035.1| chromosomal replication initiator protein dnaA [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805844|gb|EFW02611.1| chromosomal replication initiator protein dnaA [Sutterella
           wadsworthensis 3_1_45B]
          Length = 454

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 35/244 (14%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------- 85
            G++ ++ +  +A + AV   +   +        + + G  G GK+ L            
Sbjct: 112 PGLTFENYVNGNANQLAVAAAEHVATTTGTQYNPLYIYGGVGLGKTHLMQAIGHRYLDLH 171

Query: 86  --DKSRSTRFSNIAKSLDSILIDTRK-----------------PVLLEDIDLLDF---ND 123
              + R     +      S + ++                    +L++D+  L     + 
Sbjct: 172 PKARVRCVSAQDFINEYTSAVRESTNKTHASLEKFDERYRSLDLLLIDDVQSLSGAKGSQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            Q F    ++  ++  L++T+ T+        P L SRL     V I  P+ +    +++
Sbjct: 232 GQFFRAFEALVPHNKQLVITSDTYTRGLKDIEPRLISRLSQGLSVAIEPPEFEMRTAILL 291

Query: 184 KMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                  + +  ++AAYI +R++   R L  A + V        +    IT  +A  VL+
Sbjct: 292 NKAKTMGVDLPDEVAAYIAKRLKSNVRELEGALQQVVAYQQFQATSSREITIDIAKRVLR 351

Query: 241 ETQQ 244
           E  Q
Sbjct: 352 EQFQ 355


>gi|218297059|ref|ZP_03497736.1| chromosomal replication initiator protein DnaA [Thermus aquaticus
           Y51MC23]
 gi|218242614|gb|EED09151.1| chromosomal replication initiator protein DnaA [Thermus aquaticus
           Y51MC23]
          Length = 441

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSR-- 89
               + ++ +V      A     +    P +    + + G  G GK+ L +         
Sbjct: 108 NPKYTFENFVVGPNNNLAHAAAVAVAESPGKAYNPLFIYGGVGLGKTHLMHAVGHSVAKR 167

Query: 90  ---------------STRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                          +   + I +   +   +  + V   L++DI  +   +    + FH
Sbjct: 168 FPSLKIEYVSTETFTNELINAIREDRMAEFRERYRSVDLLLVDDIQFIAGKERTQEEFFH 227

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++++   P         L SR +   +  I  PD +    ++      
Sbjct: 228 TFNALFEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIAILKMNAEQ 287

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           R + I + +  YI +++  ++   E  + ++   A   G+ +TR +AA+ L +    
Sbjct: 288 RGLRIGEDVLEYIARQVTSNIRELEGALMRVVAYASLNGVELTRQVAAKALSDIFAP 344


>gi|152994044|ref|YP_001338879.1| chromosomal replication initiator protein DnaA [Marinomonas sp.
           MWYL1]
 gi|189044598|sp|A6VR65|DNAA_MARMS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|150834968|gb|ABR68944.1| chromosomal replication initiator protein DnaA [Marinomonas sp.
           MWYL1]
          Length = 516

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 30/236 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D+ +   + + A      +   P      + + G  G GK+ L           
Sbjct: 182 NNSFTFDNFIEGKSNQLAHAAALQVAENPGGAYNPLFIYGGVGLGKTHLMQAVGTEMMRH 241

Query: 85  ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126
                          +D  ++ + + I          +   +L++DI      D    + 
Sbjct: 242 NPNAKVVYLHSERFVADMVKALQLNAINDFKR--YYRSVDALLIDDIQFFAGKDRTQEEF 299

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++ +    +++T   +P         L SR      V I  P+ +    ++++  
Sbjct: 300 FHTFNALLEGGQQMILTCDRYPKEIQGLEDRLKSRFGWGLTVAIEPPELETRVAILMRKA 359

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +  I +    A +I Q++  ++   E  + ++   +   G  IT     E LK+ 
Sbjct: 360 DESGIKLSYDSAFFIAQKIRSNVRELEGALKRVIANSHFTGRAITPDFVRESLKDL 415


>gi|88798539|ref|ZP_01114123.1| chromosomal replication initiation protein [Reinekea sp. MED297]
 gi|88778639|gb|EAR09830.1| chromosomal replication initiation protein [Reinekea sp. MED297]
          Length = 495

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 82/234 (35%), Gaps = 30/234 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPS---WPSRVVILVGPSGSGKSCLANIW--------- 84
             +    +   + + A+                + + G  G GK+ L             
Sbjct: 163 AFTFQSFVEGKSNQLALAASQQVAENAGGAYNPLFIYGGVGLGKTHLMQAIGNEIIANNP 222

Query: 85  -------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFH 128
                        +D  ++ + + +A+        +   +L++DI        +  + FH
Sbjct: 223 TAKVVYLHSERFVADMVKALQLNAMAEFKR--FYRSLDALLIDDIQFFAKKDRSQEEFFH 280

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ + +  +++T   FP         L SR      V +  PD +    +++K    
Sbjct: 281 TFNALLEGNQQVILTCDRFPKEIDGLEDRLKSRFGWGLTVAVEPPDLETRVAILMKKAEQ 340

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ +  + A +I QR+  ++   E  + ++   A   G  I  +L  E LK+ 
Sbjct: 341 AKVKLPAESAFFIAQRIRSNVRELEGALKRVIANAQFIGAPIDTALVKEALKDL 394


>gi|258544743|ref|ZP_05704977.1| ATPase involved in DNA replication initiation [Cardiobacterium
           hominis ATCC 15826]
 gi|258520014|gb|EEV88873.1| ATPase involved in DNA replication initiation [Cardiobacterium
           hominis ATCC 15826]
          Length = 444

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 86/258 (33%), Gaps = 34/258 (13%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILVG 71
           Q+N  P        F           + +   +  +A    +          S  +++ G
Sbjct: 95  QRNAAPA------PFESNLNSDYQFHNFVAAPSNNEAFAAAERVSGGHFFADSNPLLIYG 148

Query: 72  PSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDTRK--------------PVL 112
            +G GKS L +   +  R     +  + N  + ++  L                    +L
Sbjct: 149 GTGLGKSHLMHAAGNALRRNGRTAVMYMNAEQYVNEFLAALAGKTQKAFSNRLRSVDALL 208

Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++D+  L     +  + FH  N +      ++MT   +P         L SR  A   V 
Sbjct: 209 IDDVQFLGGKTQSQAEFFHTFNELIDKKRQIIMTCDRYPKEIEGLEARLKSRFGAGLTVS 268

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM--DNLALSRG 227
           I  P+ +    ++     ++   +   +A +I + +E ++   E  + K+      L + 
Sbjct: 269 IRAPEPETRFAILKSKAKEQNFPLPDDVAYFIAENIESNVRDLEGALKKVIFQCQVLKKN 328

Query: 228 MGITRSLAAEVLKETQQC 245
              T  +A   L +  Q 
Sbjct: 329 EPATVPIAQAALADLLQA 346


>gi|168334923|ref|ZP_02693043.1| DnaA [Epulopiscium sp. 'N.t. morphotype B']
          Length = 445

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 90/244 (36%), Gaps = 28/244 (11%)

Query: 27  QLFFSFPRC--LGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLA 81
           Q   + P       + +  +V ++   A      +   P+     + L G  G GK+ L 
Sbjct: 98  QDPLNAPSNLNPKYTFNSFVVGNSNRMAHAATMAVAKMPAKSYNPLFLYGGVGLGKTHLM 157

Query: 82  NIWS-----------------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF 121
              +                 +K  +   ++I    ++   +  + +   L++DI  +  
Sbjct: 158 QSIAHFTLKHHPNLKVLYTSTEKFTNELINSIRDDQNNAFRNKYRNIDILLIDDIQFIAG 217

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            +    + FH  N++++ +  +++++   P         L SR +   +  +  PD +  
Sbjct: 218 KERTQEEFFHTFNTLYEANKQIIISSDRTPKEIEFLESRLRSRFEWGLIADLQPPDLETR 277

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             ++ K      I ID  +  +I + +  ++   E  ++++   +      I   L  E 
Sbjct: 278 IAILKKKAEMENITIDSNVLQFIAETIISNIRELEGALNRIIAFSSLSNETINLELTEEA 337

Query: 239 LKET 242
           LK+T
Sbjct: 338 LKDT 341


>gi|156740029|ref|YP_001430158.1| chromosomal replication initiation protein [Roseiflexus
           castenholzii DSM 13941]
 gi|189044602|sp|A7NFB8|DNAA_ROSCS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|156231357|gb|ABU56140.1| chromosomal replication initiator protein DnaA [Roseiflexus
           castenholzii DSM 13941]
          Length = 480

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  ++  +   A     +    P++    + L G  G GK+ L +   +     
Sbjct: 142 NPRYTFDRFIIGPSNRLANAACMAVAEHPAQAYNPLFLYGGVGLGKTHLLHAIGNFVLDR 201

Query: 87  --KSRSTRFSNIAKSLDSILIDTR-------------KPVLLEDIDLLDFND---TQLFH 128
             +      S+   + D I    R               +L++DI  +   +    + FH
Sbjct: 202 DPEVNVLYVSSETFTNDLINSIRRQQTEEFRIRYRNIDILLIDDIQFIAGKEQTQEEFFH 261

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     +++++   P +       L SR +   +V + +PD +    ++      
Sbjct: 262 TFNTLHSAGKQIIISSDRSPKAILTLEERLRSRFEWGLIVDVQMPDLETRTAILRAKAEQ 321

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +  ++ QR++  +   E  ++++   A    + +T  +A   L E 
Sbjct: 322 SPVPVPQPVIDFLAQRIQSHIRELEGCLNRVTAYAQMYNIPVTIEVATAALSEL 375


>gi|119355858|ref|YP_910502.1| chromosomal replication initiation protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353207|gb|ABL64078.1| chromosomal replication initiator protein DnaA [Chlorobium
           phaeobacteroides DSM 266]
          Length = 490

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 77/235 (32%), Gaps = 29/235 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90
                 + L+       A     S    P       +++ G  G GK+ +     +  R 
Sbjct: 152 NPKYVFETLIRGDCNSLAFAASKSVAQNPGLNAFNPLVIYGGVGLGKTHMMQAIGNSVRK 211

Query: 91  TRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127
              S   +  S +   +D    +                  +++DI      +    ++F
Sbjct: 212 NCLSEKVLYVSSEKFAVDFVNAIQNGKIQEFSSFYRNIDVLIIDDIQFFAGKEKTQEEIF 271

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++HQ +  +++++             L SR        I  PD +  + +I+    
Sbjct: 272 HIFNTLHQTNKQIILSSDRPIKDIKGIEDRLISRFNWGLSADIQPPDYETRKAIILSKLE 331

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241
              + +D+ +  +I   +  ++   E  +V  +   +L     I        LK+
Sbjct: 332 QSGVNLDESVIEFIATNVTENVRELEGCIVKLLAAQSLDN-REIDLHFTKSTLKD 385


>gi|332523224|ref|ZP_08399476.1| chromosomal replication initiator protein DnaA [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314488|gb|EGJ27473.1| chromosomal replication initiator protein DnaA [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 451

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 37/278 (13%)

Query: 4   MKEDYSF-----FVPDKQKNDQPKNKEEQLFFSF---PRCLGISRDDLLVHSAIEQAVRL 55
           +  DY F      +   Q+  Q  + +                S ++ +       AV  
Sbjct: 74  IAVDYQFEDDLEIMSGAQETSQTFSTQNSNPLPLVKSDLNPKYSFENFIQGDENRWAVAA 133

Query: 56  ---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS------------------RSTRFS 94
              + + P      + + G  G GK+ L N   +                          
Sbjct: 134 SIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLDNPNARVKYITAENFINEFVIH 193

Query: 95  NIAKSLDSILIDTRKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTF 147
               ++D +    R    +L++DI  L          + F+  N++H  +  +++T+   
Sbjct: 194 IRLDTMDELKEKFRNLDLLLIDDIQSLAKKTLLGTQEEFFNTFNALHNNNKQIVLTSDRT 253

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P         L +R K    V I+ PD +    ++     +      +    Y+  + + 
Sbjct: 254 PDHLNDLEQRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYSFTFPQDTIEYLAGQFDS 313

Query: 208 SLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKETQQ 244
           ++   E  +  +  +A   +   IT  +AAE ++  +Q
Sbjct: 314 NVRDLEGALKDISLVANFKQIDKITVDIAAEAIRARKQ 351


>gi|302205158|gb|ADL09500.1| Chromosomal replication initiation protein [Corynebacterium
           pseudotuberculosis C231]
 gi|308275398|gb|ADO25297.1| Chromosomal replication initiation protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 603

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 101/266 (37%), Gaps = 38/266 (14%)

Query: 14  DKQKNDQPKNKEEQLFFS----FPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSR 65
           ++  +  P+ + EQ  F+           + D  +V  +       A+ + +  P+    
Sbjct: 235 EQIPSGTPRTR-EQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVAEK-PARAYN 292

Query: 66  VVILVGPSGSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----- 110
            + + G SG GK+ L +         +   R   ++      + ++S+  D ++      
Sbjct: 293 PLFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINSVRDDRQEAFKRKY 352

Query: 111 -----VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++DI  L   +    + FH  N+++Q +  +++++   P         L +R 
Sbjct: 353 RELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPKQLTTLEDRLRTRF 412

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN- 221
           +A  +  I  PD +    +++K  A   I  D++    I  R   S+   E    ++   
Sbjct: 413 QAGLIADIYPPDLETRIAILMKKAASESIVADREAIELIASRFNTSIRELEGAFIRVSAY 472

Query: 222 LALSR----GMGITRSLAAEVLKETQ 243
            +L         I   +A + L++  
Sbjct: 473 ASLMSPDKGKHRIDLRIAEKALEDMM 498


>gi|15612564|ref|NP_240867.1| chromosomal replication initiation protein [Bacillus halodurans
           C-125]
 gi|14194694|sp|Q9RCA2|DNAA_BACHD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|5672647|dbj|BAA82685.1| 78%-identity [Bacillus halodurans]
 gi|10172613|dbj|BAB03720.1| initiation of chromosome replication [Bacillus halodurans C-125]
          Length = 449

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 34/235 (14%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-----DKS 88
             + D  ++ S    A     +    P++    + + G  G GK+ L +           
Sbjct: 116 KYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVMDHNP 175

Query: 89  RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHII 130
            +      ++   +  I+  +                +L++DI  L   +    + FH  
Sbjct: 176 NAKVVYLSSEKFTNEFINAIRDNKAVNFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTF 235

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++H+ +  +++++   P         L SR +   +  I+ PD +    ++ K      
Sbjct: 236 NALHEDNKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEN 295

Query: 191 IFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + I  ++  YI  +++   R L     ++V      +L     +   LAAE LK+
Sbjct: 296 LDIPNEVMLYIANQIDTNIRELEGALIRVVA---YSSLINQ-DMNADLAAEALKD 346


>gi|260665210|ref|ZP_05866059.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii SJ-7A-US]
 gi|260560947|gb|EEX26922.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii SJ-7A-US]
          Length = 455

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 75/238 (31%), Gaps = 26/238 (10%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87
           +       + D  +     + A     +    P      + + G  G GK+ L      +
Sbjct: 116 NLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQ 175

Query: 88  SRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDFND---T 124
               R +     + S                        T   +L++DI      +    
Sbjct: 176 MLGERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGIQE 235

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH   +++     ++MT+   P         L SR      V+I+ PD +    ++ K
Sbjct: 236 EFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRK 295

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                 + ID     YI  ++  ++   E  + K+   A      I  +LA + L + 
Sbjct: 296 KAESEGLVIDDATLDYIASQVSTNIRELEGALVKVQAHATIEKADINVNLARDALTDL 353


>gi|238855506|ref|ZP_04645811.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii 269-3]
 gi|282931532|ref|ZP_06337031.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii 208-1]
 gi|238831872|gb|EEQ24204.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii 269-3]
 gi|281304339|gb|EFA96442.1| chromosomal replication initiator protein DnaA [Lactobacillus
           jensenii 208-1]
          Length = 455

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 75/238 (31%), Gaps = 26/238 (10%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87
           +       + D  +     + A     +    P      + + G  G GK+ L      +
Sbjct: 116 NLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQ 175

Query: 88  SRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDFND---T 124
               R +     + S                        T   +L++DI      +    
Sbjct: 176 MLGERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGIQE 235

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH   +++     ++MT+   P         L SR      V+I+ PD +    ++ K
Sbjct: 236 EFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRK 295

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                 + ID     YI  ++  ++   E  + K+   A      I  +LA + L + 
Sbjct: 296 KAESEGLVIDDATLDYIASQVSTNIRELEGALVKVQAHATIEKADINVNLARDALTDL 353


>gi|314917480|gb|EFS81311.1| replication initiator protein DnaA [Propionibacterium acnes
           HL050PA1]
          Length = 474

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 91/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--------- 82
               + D  ++ ++   A     +    P +    +++ G SG GK+ L +         
Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGVGKTPLLHGIGRYVMSY 197

Query: 83  --------IWSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF---NDTQLFH 128
                   + +++  +   + I  +  +    + + V   L++DI  L        + FH
Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     ++MT+   P       P L SR +   +  I  PD +    ++ +  A 
Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I ++  +  +I  R++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 371


>gi|312877904|ref|ZP_07737849.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795330|gb|EFR11714.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 454

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 85/237 (35%), Gaps = 30/237 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI----DSWPSW-PSRVVILVGPSGSGKSCLANIWSDK-- 87
               + +  +V +    A        ++ P       + + G  G GK+ L +       
Sbjct: 113 NPKYTFETFVVGNNNRLAHAAALAVAETPPGERTYNPLFIYGGVGLGKTHLMHAIGHHVL 172

Query: 88  ----------------SRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQL 126
                           +     +   +  D   +  R    +L++DI  L   +    + 
Sbjct: 173 KLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLLIDDIQFLGGKERTQEEF 232

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++++ +  +++++   P         L SR +   +  I  PD +    ++ K  
Sbjct: 233 FHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQPPDFETRIAILSKKC 292

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LSRGMGITRSLAAEVLKE 241
                 + + +  +I  ++E ++   E  ++K+   +  ++    IT  LA + LKE
Sbjct: 293 QLEGTPVPQHILEFIASKIETNIRELEGALNKILAYSKLMAPDKEITLELAEKALKE 349


>gi|311696593|gb|ADP99466.1| chromosomal replication initiation protein [marine bacterium HP15]
          Length = 480

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 87/262 (33%), Gaps = 34/262 (12%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPR----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65
           P  +     + +  Q+            G + +  +   + + A      +   P     
Sbjct: 120 PSVRPKSDTQRRPVQVEGDIKHQSFLNEGFTFETFVEGKSNQLARAASMQVAENPGGAYN 179

Query: 66  VVILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103
            + L G  G GK+ L +                        +D  ++ + + I +     
Sbjct: 180 PLFLYGGVGLGKTHLMHAIGNEIVRRNPKAKVAYLRSERFVADMVKALQLNAINEFKR-- 237

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +   +L++DI      +    + FH  N++ +    +++T   FP         L S
Sbjct: 238 YYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVIVTCDRFPKEIVDMEERLKS 297

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V +  P+ +    +++K      + +  + A +I Q++  ++   E  +  + 
Sbjct: 298 RFGWGLTVMVEPPELETRVAILMKKADQANVKLSSEAAFFIAQKIRSNVRELEGALRLVI 357

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             A   G  IT     E LK+ 
Sbjct: 358 ANAHFTGSEITPPFIRESLKDL 379


>gi|312134083|ref|YP_004001421.1| chromosomal replication initiator protein dnaa
           [Caldicellulosiruptor owensensis OL]
 gi|311774134|gb|ADQ03621.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor owensensis OL]
          Length = 454

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 85/237 (35%), Gaps = 30/237 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI----DSWPSW-PSRVVILVGPSGSGKSCLANIWSDK-- 87
               + +  +V +    A        ++ P       + + G  G GK+ L +       
Sbjct: 113 NPKYTFETFVVGNNNRLAHAAALAVAETPPGEKTYNPLFIYGGVGLGKTHLMHAIGHHVL 172

Query: 88  ----------------SRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQL 126
                           +     +   +  D   +  R    +L++DI  L   +    + 
Sbjct: 173 KLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLLIDDIQFLGGKERTQEEF 232

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++++ +  +++++   P         L SR +   +  I  PD +    ++ K  
Sbjct: 233 FHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQPPDFETRIAILSKKC 292

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LSRGMGITRSLAAEVLKE 241
                 + + +  +I  ++E ++   E  ++K+   +  ++    IT  LA + LKE
Sbjct: 293 QLEGTPVPQHILEFIASKIETNIRELEGALNKILAYSKLMAPDKEITLELAEKALKE 349


>gi|300857418|ref|YP_003782401.1| chromosomal replication initiator protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300684872|gb|ADK27794.1| chromosomal replication initiator protein [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 526

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 101/266 (37%), Gaps = 38/266 (14%)

Query: 14  DKQKNDQPKNKEEQLFFS----FPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSR 65
           ++  +  P+ + EQ  F+           + D  +V  +       A+ + +  P+    
Sbjct: 158 EQIPSGTPRTR-EQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVAEK-PARAYN 215

Query: 66  VVILVGPSGSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----- 110
            + + G SG GK+ L +         +   R   ++      + ++S+  D ++      
Sbjct: 216 PLFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINSVRDDRQEAFKRKY 275

Query: 111 -----VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++DI  L   +    + FH  N+++Q +  +++++   P         L +R 
Sbjct: 276 RELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPKQLTTLEDRLRTRF 335

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN- 221
           +A  +  I  PD +    +++K  A   I  D++    I  R   S+   E    ++   
Sbjct: 336 QAGLIADIYPPDLETRIAILMKKAASESIVADREAIELIASRFNTSIRELEGAFIRVSAY 395

Query: 222 LALSR----GMGITRSLAAEVLKETQ 243
            +L         I   +A + L++  
Sbjct: 396 ASLMSPDKGKHRIDLRIAEKALEDMM 421


>gi|253581087|ref|ZP_04858347.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847623|gb|EES75593.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 451

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 103/273 (37%), Gaps = 33/273 (12%)

Query: 7   DYSFFVPD---KQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSW 62
           D +F +P+   K++   PK + +             + D  +V S  + A     +    
Sbjct: 79  DINFILPEDVPKKEEVSPKAQSQDARCEEAHLNPKYTFDTFVVGSNNKFAQAAALAVAES 138

Query: 63  PS---RVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK----- 109
           P      + + G +G GK+ L +     I      S      ++   + LI+T +     
Sbjct: 139 PGDTYNPLFIYGGAGLGKTHLMHSIAHFIIDHDENSKVLYVTSEEFTNELIETIRNGNNS 198

Query: 110 -------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         +L++DI  +   +    + FH  NS+H     +++++   P    +
Sbjct: 199 AMTKFREKYRNIDVLLVDDIQFIIGKESTQEEFFHTFNSLHSAKKQIIISSDKPPKDMEI 258

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
                 SR +   +  I+LPD +    ++ K        I++++  YI   ++ ++   E
Sbjct: 259 LEERFRSRFEWGLIADITLPDYETRMAILHKKEEMDGYDINEEVIKYIANNIKSNIRELE 318

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             ++K+   A      +T  LA + LK+    D
Sbjct: 319 GAINKVMAFAKLEKKEVTLELAEQALKDIISPD 351


>gi|149925376|ref|ZP_01913640.1| chromosomal replication initiation protein [Limnobacter sp. MED105]
 gi|149825493|gb|EDM84701.1| chromosomal replication initiation protein [Limnobacter sp. MED105]
          Length = 463

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 83/238 (34%), Gaps = 30/238 (12%)

Query: 35  CLGISRD----DLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN----- 82
              ++RD    + +   A + A    +   S P      + L G  G GK+ L +     
Sbjct: 125 RSRLNRDLCFSNFVSGRANQLARAAAEQVASNPGVSYNPLFLYGGVGLGKTHLIHSIGNR 184

Query: 83  ------------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDF---NDT 124
                       I +++  S       K        +      +L++DI           
Sbjct: 185 LLEQNPNTQIRYIHAEQYVSDVVKAYQKKAFEEFKRSYYSLDLLLIDDIQFFGGKSRTQE 244

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + F+    +      +++T+ T+P         L SR  +   V I  P+ +    +++K
Sbjct: 245 EFFYAFEQLIAAKKQIIITSDTYPKDIQGMDDRLISRFNSGLTVAIEPPELEMRVAILLK 304

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               ++I   + +A ++ + M  ++   E  + ++   A      +T  L  E L++ 
Sbjct: 305 KAEQQKIMFSEDVAFFVAKHMRSNIRELEGALRRIMAFASFHNKPVTMDLVREALRDM 362


>gi|167041954|gb|ABZ06692.1| putative bacterial DnaA protein [uncultured marine microorganism
           HF4000_137B17]
          Length = 461

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 86/239 (35%), Gaps = 26/239 (10%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS 88
                   R   +V  + E A    ++  + P  V   ++L G  G GK+ L +    ++
Sbjct: 126 LNTKYTFGR--FVVGKSNELAHAAAEAVSNRPGEVYSPLVLYGAVGLGKTHLMHAIGHRA 183

Query: 89  RSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127
            +   S I  + +    +  K +                  LL+DI  L   +      F
Sbjct: 184 VANGLSLIYATTEEFTNEYIKAIGEGRTEEFRDRYRSTDVLLLDDIQFLIGKEQTQEGFF 243

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H  +  +++T+     +  +    + SRL    VV I  PD +    ++     
Sbjct: 244 HTFNALHMTNRQIVITSDRPVSALTLLEDRIQSRLAGGLVVDIQAPDIETRLAILRAKAE 303

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
                + + +  ++ +R+ +++   E  ++++   A   G  +   L    +      D
Sbjct: 304 TINQDVSQTVLDFLAERIHKNIRELEGSLNRVVAYADLTGSLLDVELVKRAIDGLADPD 362


>gi|145218823|ref|YP_001129532.1| chromosomal replication initiator protein DnaA [Prosthecochloris
           vibrioformis DSM 265]
 gi|145204987|gb|ABP36030.1| chromosomal replication initiator protein DnaA [Chlorobium
           phaeovibrioides DSM 265]
          Length = 487

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 85/256 (33%), Gaps = 36/256 (14%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVIL 69
           D  + D  +  E QL          + D L+       A     S    P       +++
Sbjct: 135 DSFERDIERF-ETQL------NSKYTFDTLIRGDCNSLAFAAAKSVAQNPGQNAFNPLVI 187

Query: 70  VGPSGSGKSCLANIW-----SDKSRS---------------TRFSNIAKSLDSILIDTRK 109
            G  G GK+ +          ++  +                   N      S    T  
Sbjct: 188 YGGVGLGKTHMMQAIGNTVRQEREGAKVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRTID 247

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            ++++DI      +    ++FHI N++HQ +  ++++A     +       L SR     
Sbjct: 248 VLIIDDIQFFSGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKNIKGIEDRLISRFNWGL 307

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALS 225
              I  PD +  + +I+       + +D+ +  +I   +  ++   E  +V  +   +L 
Sbjct: 308 SADIQPPDYETRKAIILSKLQQSGVDLDENVIEFIANNITDNVRELEGCIVKLLAARSLD 367

Query: 226 RGMGITRSLAAEVLKE 241
               I  S     LK+
Sbjct: 368 N-RDIDLSFTKLTLKD 382


>gi|116688025|ref|YP_833648.1| chromosomal replication initiation protein [Burkholderia
           cenocepacia HI2424]
 gi|166201863|sp|A0K2M8|DNAA_BURCH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|116646114|gb|ABK06755.1| chromosomal replication initiator protein DnaA [Burkholderia
           cenocepacia HI2424]
          Length = 525

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424


>gi|78064659|ref|YP_367428.1| chromosomal replication initiation protein [Burkholderia sp. 383]
 gi|123729088|sp|Q39L82|DNAA_BURS3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|77965404|gb|ABB06784.1| chromosomal replication initiator protein, DnaA [Burkholderia sp.
           383]
          Length = 525

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424


>gi|56416662|ref|YP_153736.1| chromosomal replication initiation protein [Anaplasma marginale
           str. St. Maries]
 gi|71151791|sp|Q5PB48|DNAA_ANAMM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56387894|gb|AAV86481.1| chromosomal replication initiator protein [Anaplasma marginale str.
           St. Maries]
          Length = 471

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 87/242 (35%), Gaps = 28/242 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A           + +     + L G  G GK+ L +  +  
Sbjct: 134 PLDPRFTFDNFVVGKPNELAFAAARRVAESSAPIPGSNPLFLYGGVGLGKTHLMHAIAWY 193

Query: 86  --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124
                          +    ++    +S D +L   +      ++++D+  +   D    
Sbjct: 194 ILNSSVKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 253

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++  
Sbjct: 254 EFFHTFNALIDQNKQLVISADRSPSDLDGVEDRIKSRLGWGLVADINETTFELRLGILQL 313

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 + +  ++  ++ + ++ ++   E  ++K+   +   G  +T   A+ +L +  +
Sbjct: 314 KIEKMGVHVPNEVLEFLAKNIKSNIRELEGALNKVVAHSSLVGRSVTIESASGILSDLLR 373

Query: 245 CD 246
            +
Sbjct: 374 AN 375


>gi|306834799|ref|ZP_07467863.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726]
 gi|304569327|gb|EFM44828.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726]
          Length = 566

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 95/255 (37%), Gaps = 36/255 (14%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72
           +     +   +   +       + +  ++ S+       AV + ++ P+     + + G 
Sbjct: 213 REAPAHDPNRETSLN----PKHTFESFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 267

Query: 73  SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110
           SG GK+ L +  +  + +                     ++S+  D ++           
Sbjct: 268 SGLGKTHLLH--AAGNYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 325

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  L+  +    + FH  N++HQ +  +++++   P         L +R +   +
Sbjct: 326 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 385

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    +++K  A     +D+ +   I  R E S+   E  + ++   +    
Sbjct: 386 TDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 445

Query: 228 MGITRSLAAEVLKET 242
             I   +A   L++ 
Sbjct: 446 EPINVEMAEIALRDL 460


>gi|288554606|ref|YP_003426541.1| chromosomal replication initiation protein [Bacillus pseudofirmus
           OF4]
 gi|288545766|gb|ADC49649.1| chromosomal replication initiation protein [Bacillus pseudofirmus
           OF4]
          Length = 450

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 34/235 (14%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-----DKS 88
             + D  ++ S    A     +    P++    + + G  G GK+ L +           
Sbjct: 117 KYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVMDHNP 176

Query: 89  RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHII 130
            +      ++   +  I++ +                +L++DI  L   +    + FH  
Sbjct: 177 NAKVVYLSSEKFTNEFINSIRDNRAVNFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTF 236

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++H+    +++++   P         L SR +   +  I+ PD +    ++ K      
Sbjct: 237 NALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEN 296

Query: 191 IFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + I  ++  YI  +++   R L     ++V      +L     +   LAAE LK+
Sbjct: 297 LDIPNEVMLYIANQIDTNIRELEGALIRVVA---YSSLINQ-DMNADLAAEALKD 347


>gi|170731357|ref|YP_001763304.1| chromosomal replication initiation protein [Burkholderia
           cenocepacia MC0-3]
 gi|226735786|sp|B1K0Y8|DNAA_BURCC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|169814599|gb|ACA89182.1| chromosomal replication initiator protein DnaA [Burkholderia
           cenocepacia MC0-3]
          Length = 525

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424


>gi|270158402|ref|ZP_06187059.1| chromosomal replication initiator protein DnaA [Legionella
           longbeachae D-4968]
 gi|289163354|ref|YP_003453492.1| Chromosomal replication initiator protein DnaA [Legionella
           longbeachae NSW150]
 gi|269990427|gb|EEZ96681.1| chromosomal replication initiator protein DnaA [Legionella
           longbeachae D-4968]
 gi|288856527|emb|CBJ10322.1| Chromosomal replication initiator protein DnaA [Legionella
           longbeachae NSW150]
          Length = 458

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 83/233 (35%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSD------ 86
               +  +  ++ + A        +         + + G  G GK+ L +   +      
Sbjct: 126 KFVFESFVEGNSNQLARAASMQVAERPGD-AYNPLFIYGGVGLGKTHLMHAIGNSILKNN 184

Query: 87  -------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFHI 129
                         +++ K++ +  I+       +   +L++DI        +  + FH 
Sbjct: 185 PDAKILYLHSERFVADMVKAIQTNSINEFKRFYRSLNALLIDDIQFFAGKDRSQEEFFHT 244

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++ +    +++T+  +P         L SR      V +  P+ +    +++      
Sbjct: 245 FNALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVAILISKAEQS 304

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            I +  ++A +I +R+  ++   E  + ++   A   G  IT     E L++ 
Sbjct: 305 NIDLPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPITIEFVHEALRDL 357


>gi|251771680|gb|EES52255.1| chromosomal replication initiator protein DnaA [Leptospirillum
           ferrodiazotrophum]
          Length = 450

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 44/280 (15%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDD--------------LLVHSAIEQ 51
           ++S  V +++K+ +P+   +      P      SRD                +V  +   
Sbjct: 75  EFSISVSEEKKSKKPRQTPKP---PLPVLKESASRDPSWESHLISRHTFDTYVVGESNRF 131

Query: 52  AVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-- 106
           A      +   P        + G  G GK+ L N   +   +   S+    L S      
Sbjct: 132 AHAAAFQVSENPGKSYNPFYIYGGVGLGKTHLVNAIGNAILAKIPSSRILYLTSESFLNE 191

Query: 107 ------------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145
                             T   ++++DI  +   +    + FH  NS+ +    +++T+ 
Sbjct: 192 MVSAIRFAKMIEFKERYRTIDVLIIDDIQFISTKEKTQEEFFHTFNSLFEKGKQIILTSD 251

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         L SR  +  +  I +PD +    ++++      I + + +  ++   +
Sbjct: 252 CPPNEIATLEERLRSRFASGLIADIQIPDFETKVAILIEKMKLEGIALPEDVIYFLATSI 311

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + ++   E  + ++       G  +T  +   +L    Q 
Sbjct: 312 KSNIRELEGAMIRLGAYQTLMGKPVTMEVTRRLLSNLIQS 351


>gi|219871632|ref|YP_002476007.1| chromosomal replication initiation protein [Haemophilus parasuis
           SH0165]
 gi|219691836|gb|ACL33059.1| chromosomal replication initiator protein [Haemophilus parasuis
           SH0165]
          Length = 444

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 92/252 (36%), Gaps = 27/252 (10%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPS 73
              P  + +           ++ D+ +   + + A  +     S P         L G +
Sbjct: 92  TATPPQETQATALRSGLTETLTFDNFVQGKSNQLAKAVAQQVASNPGESHCNPFSLYGGT 151

Query: 74  GSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDF 121
           G GK+ L +   ++       +      ++     ++   K   +E+       +D+L  
Sbjct: 152 GLGKTHLLHAIGNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMI 211

Query: 122 ND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +D            + FH  NS+ +    +++T+  FP +       + SRL       I
Sbjct: 212 DDIQFFANKEATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAI 271

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             P+ +    +++K   +R I + + +A ++ Q++  ++   E  +++    +      I
Sbjct: 272 EPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQI 331

Query: 231 TRSLAAEVLKET 242
           T     E LK+ 
Sbjct: 332 TIDAVREALKDL 343


>gi|107024098|ref|YP_622425.1| chromosomal replication initiation protein [Burkholderia
           cenocepacia AU 1054]
 gi|105894287|gb|ABF77452.1| chromosomal replication initiator protein DnaA [Burkholderia
           cenocepacia AU 1054]
          Length = 561

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 227 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 286

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 287 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 346

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 347 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 406

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 407 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 460


>gi|237747155|ref|ZP_04577635.1| chromosomal replication initiator protein dnaA [Oxalobacter
           formigenes HOxBLS]
 gi|229378506|gb|EEO28597.1| chromosomal replication initiator protein dnaA [Oxalobacter
           formigenes HOxBLS]
          Length = 460

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 84/231 (36%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK------S 88
           ++ D  +   A + A        + P      + L G  G GK+ L +   ++      S
Sbjct: 129 MTFDSFVTGKANQLARAAAIQVANNPGVSYNPLYLFGGVGLGKTHLIHAIGNQVLQDIPS 188

Query: 89  RSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFHIIN 131
              R+ +  + +  ++                +   +L++DI           + F+   
Sbjct: 189 ARIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDMLLIDDIQFFSGKNRTQEEFFYAFE 248

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++      +++T+ T+P         L SR  +   V I  P+ +    +++K      I
Sbjct: 249 ALIAARKQIIITSDTYPKEISGMDDRLTSRFDSGLTVAIEPPELEMRVAILIKKAGQEGI 308

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +   +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 309 QLSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHGRDITIELTKEALKDL 359


>gi|206558825|ref|YP_002229585.1| chromosomal replication initiation protein [Burkholderia
           cenocepacia J2315]
 gi|226735787|sp|B4E7D1|DNAA_BURCJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|198034862|emb|CAR50734.1| chromosomal replication initiator protein DnaA [Burkholderia
           cenocepacia J2315]
          Length = 525

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424


>gi|90415378|ref|ZP_01223312.1| chromosomal replication initiation protein [marine gamma
           proteobacterium HTCC2207]
 gi|90332701|gb|EAS47871.1| chromosomal replication initiation protein [marine gamma
           proteobacterium HTCC2207]
          Length = 523

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 87/258 (33%), Gaps = 28/258 (10%)

Query: 13  PDKQKNDQPK--NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVV 67
           P  Q+   P       +           + D  +   + + A+         P      +
Sbjct: 165 PVIQRIQAPAIITSAAEHSLKSNLNSAFTFDSFVEGKSNQLALAAAQQVAENPGGSYNPL 224

Query: 68  ILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILID-------T 107
            + G  G GK+ L +   +  R                 +++ K+L    ID       +
Sbjct: 225 FIYGGVGLGKTHLMHAVGNALRMRKPDAKIVYLHSERFVADMVKALQLKAIDEFKQFYRS 284

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI      +    + FH  N++ +    +++T   +P         L SR   
Sbjct: 285 VDALLIDDIQFFAGKERSQEEFFHTYNALLERGQQMILTCDRYPKEINGVEERLKSRFGW 344

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              V +  P+ +    +++       I + +  A +I QR+  ++   E  + ++   A 
Sbjct: 345 GLTVAVEPPELETRVAILINKAEQAGIELSRDAAFFIAQRIRSNVRELEGALKRVMAHAQ 404

Query: 225 SRGMGITRSLAAEVLKET 242
             G  I   L  E LK+ 
Sbjct: 405 FSGRVIDIDLIRESLKDL 422


>gi|237814480|ref|YP_002898931.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei MSHR346]
 gi|237504967|gb|ACQ97285.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei MSHR346]
          Length = 459

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 125 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 184

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 185 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 244

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 245 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 304

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 305 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 358


>gi|94993397|ref|YP_601495.1| chromosomal replication initiation protein [Streptococcus pyogenes
           MGAS10750]
 gi|123080159|sp|Q1J960|DNAA_STRPF RecName: Full=Chromosomal replication initiator protein DnaA
 gi|94546905|gb|ABF36951.1| Chromosomal replication initiator protein dnaA [Streptococcus
           pyogenes MGAS10750]
          Length = 451

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 41/268 (15%)

Query: 15  KQKNDQPKNKEEQLFFS-FPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65
           +Q   +   K +Q   +  P          S ++ +       AV     + + P     
Sbjct: 87  EQNQTKINQKPKQQALNSLPTVTSDLNPKYSFENFIQGDENRWAVAASIAVANTPGTTYN 146

Query: 66  VVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDT 107
            + + G  G GK+ L N   +                              ++D +    
Sbjct: 147 PLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKF 206

Query: 108 RKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           R    +L++DI  L          + F+  N++H  +  +++T+   P         L +
Sbjct: 207 RNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVT 266

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R K    V I+ PD +    ++     +      +    Y+  + + ++   E  +  + 
Sbjct: 267 RFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI- 325

Query: 221 NLALSRGMG----ITRSLAAEVLKETQQ 244
             +L         IT  +AAE ++  +Q
Sbjct: 326 --SLVANFKQIDTITVDIAAEAIRARKQ 351


>gi|331092112|ref|ZP_08340943.1| chromosomal replication initiator protein DnaA [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330402313|gb|EGG81884.1| chromosomal replication initiator protein DnaA [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 456

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 93/265 (35%), Gaps = 42/265 (15%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVG 71
           K++N + K   EQ   +       + D  +V +  + A      +   P      + L G
Sbjct: 92  KEENQKIKTIIEQANLNH----KYTFDTFVVGNNNQFAHAASLAVAESPGEVYNPLFLYG 147

Query: 72  PSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
             G GK+ L +     I  +          +++  + LI+  K                 
Sbjct: 148 GVGLGKTHLMHSIAHFILEEDPTKKVLYVTSETFTNELIEAIKSGRTGNESTMTSFREKY 207

Query: 111 -----VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                +L++D+  +   +    + FH  N +H     +++++   P  +      L +R 
Sbjct: 208 RNIDVLLIDDVQFIIGKESTQEEFFHTFNHLHVSGKQIILSSDKPPKDFETLEARLRTRF 267

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQI---FIDKKLAAYIVQRME---RSLVFAEKLV 216
           +   +  IS PD +    ++ K      +    I   +  YI   ++   R L  +   +
Sbjct: 268 EWGLIADISSPDYETRMAILQKKIELDNLDVYHIPDDVVEYIANNVKSNIRELEGSLNKL 327

Query: 217 DKMDNLALSRGMGITRSLAAEVLKE 241
             +  L  +    I   LAAE LK+
Sbjct: 328 IALYKLNYNSSKEIDIPLAAEALKD 352


>gi|291333918|gb|ADD93598.1| chromosomal replication initiation protein [uncultured marine
           bacterium MedDCM-OCT-S04-C385]
          Length = 444

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 36  LGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----- 87
              + +  +   +   A+     +   P      + + G  G GK+ L +   +K     
Sbjct: 111 ENFTFETFVEGKSNNIALAAAKQVADSPKGAYNPLFIYGGVGLGKTHLMHAVGNKLKEKD 170

Query: 88  --------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHI 129
                         S++ KSL    I+           +L++DI      +    +LFH 
Sbjct: 171 PSKRIVYIHSERFVSDMVKSLQLGAINEFKQFYRGVDALLIDDIQFFAGKEQSQEELFHT 230

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++ +    +++T   +P         L SRL     V +  P+ +    +++K   + 
Sbjct: 231 FNALLEGGQQMILTCDRYPKEIEGLEERLKSRLGWGLPVIVEPPELETRVAILLKKAEEL 290

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            + + +  A +I +R+  ++   E  + ++   A      +  +L  E L++ 
Sbjct: 291 NLNMPQDCAFFISERIRSNVRELEGALKRVGANAKFANKEVDLNLIKESLRDL 343


>gi|172038580|ref|YP_001805081.1| chromosomal replication initiation protein [Cyanothece sp. ATCC
           51142]
 gi|254777898|sp|B1X0X6|DNAA_CYAA5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|171700034|gb|ACB53015.1| chromosomal replication initiator protein [Cyanothece sp. ATCC
           51142]
          Length = 455

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 42/257 (16%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71
           + K  Q   K  QL          +    +V      A     +    P R    + L G
Sbjct: 103 QNKRQQESPKLNQL------NPRYNFSRFVVGPTNRMAHAASLAVAESPGREFNPLFLCG 156

Query: 72  PSGSGKSCLANIWS-----------------DKSRSTRFSNIAKSLDSILID---TRKPV 111
             G GK+ L    +                 ++  +   ++I +       +   T   +
Sbjct: 157 GVGLGKTHLMQAIAYYRLELYPNANVFYVSTEQFTNDLITSIRQDSMENFREHYRTADIL 216

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATV 167
           L++DI  ++  +    + FH  N++H+    +++ +   P      L D L SR     +
Sbjct: 217 LVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKRIP-SLQDRLVSRFSMGLI 275

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLA 223
             I +PD +    ++ K      I + + +  YI        R L     + V  +    
Sbjct: 276 ADIQVPDLETRMAILQKKAEYENIRLPRDVIEYIATNYTSNIRELEGALIRAVTYISISG 335

Query: 224 LSRGMGITRSLAAEVLK 240
           LS     T    A VL 
Sbjct: 336 LSM----TVENIAPVLN 348


>gi|312958103|ref|ZP_07772626.1| hypothetical protein PFWH6_0001 [Pseudomonas fluorescens WH6]
 gi|311287534|gb|EFQ66092.1| hypothetical protein PFWH6_0001 [Pseudomonas fluorescens WH6]
          Length = 505

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 84/235 (35%), Gaps = 34/235 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84
            + ++ +   + + A     +W    +       + L G  G GK+ L +          
Sbjct: 174 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 231

Query: 85  --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127
                         +D  ++ + + I +        +   +L++DI      +    + F
Sbjct: 232 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 289

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H   ++ +    +++T+  +P         L SR      V +  P+ +    +++K   
Sbjct: 290 HPFTALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 349

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++ +    A +I QR+  ++   E  + ++   +   G  IT  L  E LK+ 
Sbjct: 350 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 404


>gi|300814770|ref|ZP_07095018.1| chromosomal replication initiator protein DnaA [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300511157|gb|EFK38409.1| chromosomal replication initiator protein DnaA [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 451

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 108/292 (36%), Gaps = 59/292 (20%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLI 56
           +N++ ED +  V   + ND   +  +    +       S +  +V  + E A    + + 
Sbjct: 82  LNIISEDEAKNVVLNKNNDSFDDNFQSTRLN----PKYSFESFVVGKSNEFAHAASLAVA 137

Query: 57  DSWPSWP----SRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSN 95
           +++   P    S  + + G  G GK+ L +                   S++  +   ++
Sbjct: 138 ENYED-PRKSYSNPLFIYGGVGLGKTHLMHAIGNFIINQDPTKKILYVTSEQFTNELINS 196

Query: 96  IAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPV 149
           I K+ +    +  +    +L++DI  +   D    + FH  N +H+ +  +++T+   P 
Sbjct: 197 IQKNKNEEFRNKYRKVDLLLIDDIQFIADKDRTQEEFFHTFNELHEANKQIVLTSDKPPK 256

Query: 150 SWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-- 206
                L D L SR     VV I  PD +    ++          + + +  YI + ++  
Sbjct: 257 EIK-SLEDRLISRFAWGLVVDIGQPDLETRIAILRSKANVEGFDVSEDVINYIAENVKSN 315

Query: 207 -RSLV-FAEKLVD---------KMDNLAL--------SRGMGITRSLAAEVL 239
            R L     ++V           ++N A+         +   I   L  EV+
Sbjct: 316 IRELEGALSRVVAYSKLTSGDISIENTAIVLADIFESKKKKVINVKLIKEVI 367


>gi|227831831|ref|YP_002833538.1| chromosomal replication initiator protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183095|ref|ZP_06042516.1| chromosomal replication initiation protein [Corynebacterium
           aurimucosum ATCC 700975]
 gi|254777897|sp|C3PE72|DNAA_CORA7 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|227452847|gb|ACP31600.1| chromosomal replication initiator protein [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 546

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 97/255 (38%), Gaps = 36/255 (14%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72
           + +   N   +   +       + ++ ++ S+       AV + ++ P+     + + G 
Sbjct: 193 REEPAHNPNREKSLN----PKHTFENFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 247

Query: 73  SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110
           SG GK+ L +  +  + +                     ++S+  D ++           
Sbjct: 248 SGLGKTHLLH--AAGNYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 305

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  L+  +    + FH  N++HQ +  +++++   P         L +R +   +
Sbjct: 306 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 365

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    +++K  +     +D+ +   I  R E S+   E  + ++   +    
Sbjct: 366 TDIQPPDLETRIAILMKKASADGTDVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 425

Query: 228 MGITRSLAAEVLKET 242
             I+  +A   L + 
Sbjct: 426 EPISLEMAEIALHDL 440


>gi|167854885|ref|ZP_02477661.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755]
 gi|167853952|gb|EDS25190.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755]
          Length = 444

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 92/252 (36%), Gaps = 27/252 (10%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPS 73
              P  + +           ++ D+ +   + + A  +     S P         L G +
Sbjct: 92  TATPPQETQATALRSGLTETLTFDNFVQGKSNQLAKAVAQQVASNPGESHCNPFSLYGGT 151

Query: 74  GSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDF 121
           G GK+ L +   ++       +      ++     ++   K   +E+       +D+L  
Sbjct: 152 GLGKTHLLHAIGNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMI 211

Query: 122 ND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +D            + FH  NS+ +    +++T+  FP +       + SRL       I
Sbjct: 212 DDIQFFANKEATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAI 271

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             P+ +    +++K   +R I + + +A ++ Q++  ++   E  +++    +      I
Sbjct: 272 EPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQI 331

Query: 231 TRSLAAEVLKET 242
           T     E LK+ 
Sbjct: 332 TIDAVREALKDL 343


>gi|148259022|ref|YP_001233149.1| chromosomal replication initiation protein [Acidiphilium cryptum
           JF-5]
 gi|146400703|gb|ABQ29230.1| chromosomal replication initiator protein DnaA [Acidiphilium
           cryptum JF-5]
          Length = 482

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANI--WSD 86
           P     + D  +V    E A           +      + L G  G GK+ L +   W  
Sbjct: 145 PLDPRFTFDTFVVGKPNEFAYACARRVADGHASPGFNPLFLYGGVGLGKTHLMHAIAWEL 204

Query: 87  KSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLL---DFNDTQ 125
             RS   +    S +  +                  + +   ++++D+  L   D    +
Sbjct: 205 SQRSDEVTVAYMSAEKFMHKFVSALRRQSTIEFKNELRSVDVLMVDDLQFLIGKDGTQEE 264

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++      ++++A   P         L +RL    V  +     +    ++   
Sbjct: 265 FFHTFNALVDSGKQIIVSADKSPSDLSGIEDRLRTRLGCGMVADVHATTYELRLAILEAK 324

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            A   + +  ++  ++ Q++  ++   E  ++++   A      +T   A EVL +  + 
Sbjct: 325 AARAGVVVPGRVMEFLAQKITANVRELEGALNRLIAHANLFERPVTLETAHEVLHDLLRA 384


>gi|332299202|ref|YP_004441123.1| Chromosomal replication initiator protein dnaA [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176265|gb|AEE11955.1| Chromosomal replication initiator protein dnaA [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 475

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 92/258 (35%), Gaps = 38/258 (14%)

Query: 22  KNKEEQLF-FSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSG 76
           K +  QL  F       +S D      +   A      + +           + GPSG G
Sbjct: 127 KTEPRQLPDFDSQLKPQLSFDTYYQGESNRTASSIARSIAEKPGQGALNPCFIYGPSGVG 186

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSILIDTR-------------------------KPV 111
           K+ L +         R   +   L  + + +                            +
Sbjct: 187 KTHLCHAI-----GLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVL 241

Query: 112 LLEDID-LLDFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI  L+    TQL  F + N ++     +++T+ T PV+       L SR+  +  +
Sbjct: 242 LIDDIQGLIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTI 301

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           ++  PD D   + +     +    + +++  YI + +  S+   + +   +   A   G 
Sbjct: 302 EVERPDYDLRREYLRHKSEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLITRAAVEGC 361

Query: 229 GITRSLAAEVLKETQQCD 246
            +T S   +++ +T + +
Sbjct: 362 DVTSSFVKKIVSQTVKQE 379


>gi|313886600|ref|ZP_07820313.1| chromosomal replication initiator protein DnaA [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923956|gb|EFR34752.1| chromosomal replication initiator protein DnaA [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 475

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 92/258 (35%), Gaps = 38/258 (14%)

Query: 22  KNKEEQLF-FSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSG 76
           K +  QL  F       +S D      +   A      + +           + GPSG G
Sbjct: 127 KTEPRQLPDFDSQLKPQLSFDTYYQGESNRTASSIARSIAEKPGQGALNPCFIYGPSGVG 186

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSILIDTR-------------------------KPV 111
           K+ L +         R   +   L  + + +                            +
Sbjct: 187 KTHLCHAI-----GLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVL 241

Query: 112 LLEDID-LLDFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI  L+    TQL  F + N ++     +++T+ T PV+       L SR+  +  +
Sbjct: 242 LIDDIQGLIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTI 301

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           ++  PD D   + +     +    + +++  YI + +  S+   + +   +   A   G 
Sbjct: 302 EVERPDYDLRREYLRHKSEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLITRAAVEGC 361

Query: 229 GITRSLAAEVLKETQQCD 246
            +T S   +++ +T + +
Sbjct: 362 DVTSSFVKKIVSQTVKQE 379


>gi|193211677|ref|YP_001997630.1| chromosomal replication initiation protein [Chlorobaculum parvum
           NCIB 8327]
 gi|193085154|gb|ACF10430.1| chromosomal replication initiator protein DnaA [Chlorobaculum
           parvum NCIB 8327]
          Length = 493

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 29/240 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85
           F        +   L+       A     S    P       +++ G  G GK+ +     
Sbjct: 150 FESNLNPKYTFSTLIRGDCNSLAFAAAKSIAQNPGQNAFNPLVIYGGVGLGKTHMMQAIG 209

Query: 86  DKSRSTRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND-- 123
           +     R S   +  S +   ID    +                  +++DI      +  
Sbjct: 210 NSVLENRISGAVLYVSSEKFAIDFVNAIQNGNIQEFSAFYRNIDVLIIDDIQFFAGKEKT 269

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             ++FHI N++HQ +  ++++A             L SR        I  PD +  + +I
Sbjct: 270 QEEIFHIFNTLHQANKQIILSADRPIKEIKGIEDRLISRFNWGLSTDIQAPDYETRKAII 329

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241
                   + +D  +  +I   +  ++   E  +V  +   +L     I        LK+
Sbjct: 330 QSKLKQNGVNLDPAVIEFIATNVTNNVRELEGCIVKLLAAHSLDNQ-EIDLQFTKSTLKD 388


>gi|77464920|ref|YP_354424.1| chromosomal replication initiation protein [Rhodobacter sphaeroides
           2.4.1]
 gi|126460789|ref|YP_001041903.1| chromosomal replication initiation protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332559819|ref|ZP_08414141.1| chromosomal replication initiation protein [Rhodobacter sphaeroides
           WS8N]
 gi|123771654|sp|Q3IY61|DNAA_RHOS4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166214695|sp|A3PFL5|DNAA_RHOS1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|77389338|gb|ABA80523.1| chromosomal replication initiator protein DnaA [Rhodobacter
           sphaeroides 2.4.1]
 gi|126102453|gb|ABN75131.1| chromosomal replication initiator protein DnaA [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332277531|gb|EGJ22846.1| chromosomal replication initiation protein [Rhodobacter sphaeroides
           WS8N]
          Length = 455

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--- 86
           P     + D  +V    E A                 + L G  G GK+ L +  +    
Sbjct: 114 PLDARFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHDLQ 173

Query: 87  --KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQL 126
             +  +      A+      +   +                ++++D+  +   D    + 
Sbjct: 174 KRQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVDDVQFIAGKDSTQEEF 233

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++ +  
Sbjct: 234 FHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKA 293

Query: 187 -----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                  R + I   +  ++  R+  ++   E  + ++   A   G  IT  LA + L +
Sbjct: 294 DFYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLAQDCLAD 353

Query: 242 TQQC 245
             + 
Sbjct: 354 ILRA 357


>gi|282881772|ref|ZP_06290430.1| chromosomal replication initiator protein DnaA [Peptoniphilus
           lacrimalis 315-B]
 gi|281298382|gb|EFA90820.1| chromosomal replication initiator protein DnaA [Peptoniphilus
           lacrimalis 315-B]
          Length = 451

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 106/291 (36%), Gaps = 57/291 (19%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLI 56
           +N++ ED +  V   + ND   +  +    +       S +  +V  + E A    + + 
Sbjct: 82  LNIISEDEAKNVVLNKNNDSFDDNFQSTRLN----PKYSFESFVVGKSNEFAHAASLAVA 137

Query: 57  DSWPSWP----SRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSN 95
           +++   P    S  + + G  G GK+ L +                   S++  +   ++
Sbjct: 138 ENYED-PRKSYSNPLFIYGGVGLGKTHLMHAIGNFIINQDPTKKILYVTSEQFTNELINS 196

Query: 96  IAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPV 149
           I K+ +    +  +    +L++DI  +   D    + FH  N +H+ +  +++T+   P 
Sbjct: 197 IQKNKNEEFRNKYRKVDLLLIDDIQFIADKDRTQEEFFHTFNELHEANKQIVLTSDKPPK 256

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME--- 206
                   L SR     VV I  PD +    ++          + + +  YI + ++   
Sbjct: 257 EIKSLEERLISRFAWGLVVDIGQPDLETRIAILRSKANVEGFDVSEDVINYIAENVKSNI 316

Query: 207 RSLV-FAEKLVD---------KMDNLAL--------SRGMGITRSLAAEVL 239
           R L     ++V           ++N A+         +   I   L  EV+
Sbjct: 317 RELEGALSRVVAYSKLTSGDISIENTAIVLADIFESKKKKVINVKLIKEVI 367


>gi|154508239|ref|ZP_02043881.1| hypothetical protein ACTODO_00733 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797873|gb|EDN80293.1| hypothetical protein ACTODO_00733 [Actinomyces odontolyticus ATCC
           17982]
          Length = 476

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 32/244 (13%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + D  ++  +      A       P      + + G SG GK+ L       +   
Sbjct: 132 NPKFTFDTFVIGPSNRFAHAAALAASETPGTAFNPLFIYGDSGLGKTHLLQAIGHNALSM 191

Query: 89  -------------------RSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123
                               + R +    S         + +   L++DI  +   +   
Sbjct: 192 MPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQTV 251

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
              FH  N++H  +  +++T+   P         + SR  +  +V +  PD +    ++ 
Sbjct: 252 EGFFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLETRIAILH 311

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE-T 242
           K      + +  ++  Y+  R+  ++   E  + ++   A      I  +LA  +LK+  
Sbjct: 312 KKADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDLNLAQMMLKDFV 371

Query: 243 QQCD 246
              D
Sbjct: 372 SNPD 375


>gi|187250425|ref|YP_001874907.1| DNA replication initiation ATPase [Elusimicrobium minutum Pei191]
 gi|226735810|sp|B2KAM4|DNAA_ELUMP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|186970585|gb|ACC97570.1| ATPase involved in DNA replication initiation [Elusimicrobium
           minutum Pei191]
          Length = 452

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 97/266 (36%), Gaps = 36/266 (13%)

Query: 11  FVPDKQKNDQPKNKEE--------QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS---- 58
            + D     +P+   +        ++ F        + +  +   +   A R  ++    
Sbjct: 81  VLEDTTPYKRPEIPPQVMGANYNAKIPFPSRLNPNYTFEGFIEGPSNRFAYRAAEAVVKK 140

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILI 105
                +  +++    G GK+ L +   ++             S     S   +SL +   
Sbjct: 141 LGERENNPLVIYSTPGLGKTHLLHAIGNRILKENPYAKILYMSGEEFVSEYIESLQNRNP 200

Query: 106 DTRK-------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           +  +         L++DI  +   +    + F+  N++ +    +++T+   P   G+  
Sbjct: 201 EAFRKKHRSLDCFLMDDIQFVAGKESSVQEFFYTFNALFESKKQIVLTSDRTPQQLGID- 259

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
           P L SRL +  V +I  PD +    ++ +        +   + A+I + ++ S+   E  
Sbjct: 260 PRLSSRLLSGIVSEIKRPDLETRIAILRQKRDTSNFDVGDDVIAFIAEGVQASIRELEGC 319

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKE 241
           + ++       G+  T  +A EVL +
Sbjct: 320 LFRLTTYCNIHGVTPTIPIAREVLSD 345


>gi|58584534|ref|YP_198107.1| chromosomal replication initiation protein [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|71151810|sp|Q5GT09|DNAA_WOLTR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|58418850|gb|AAW70865.1| ATPase involved in DNA replication initiation, DnaA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 460

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 90/245 (36%), Gaps = 34/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL-------IDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           P     + D+ +V    E A          ID  P   S  + L G  G GK+ L +  +
Sbjct: 123 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPIPG--SNPLFLYGGVGLGKTHLMHAIA 180

Query: 86  --------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND- 123
                    K +    S          A     I++      +   ++++D+  +   D 
Sbjct: 181 WHIVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDS 240

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++   +  L+++A   P         + SRL    V  I+    +    +
Sbjct: 241 TQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGI 300

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +        +++ + +  ++ + +  ++   E  ++K+ + +L  G  +T   A+E L +
Sbjct: 301 LQAKVEQMNMYVPQDVLEFLARNIRSNIRELEGALNKVAHTSLI-GRSMTVESASETLMD 359

Query: 242 TQQCD 246
             + +
Sbjct: 360 LLRSN 364


>gi|307543590|ref|YP_003896069.1| chromosomal replication initiation protein [Halomonas elongata DSM
           2581]
 gi|307215614|emb|CBV40884.1| chromosomal replication initiation protein [Halomonas elongata DSM
           2581]
          Length = 488

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            + +  +   + + A      +   P      + L G  G GK+ L +   +   + R +
Sbjct: 157 FTFETFVEGKSNQLARAASRQVSENPGGAYNPLFLYGGVGLGKTHLMHAVGNALDARREN 216

Query: 95  NIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQLFHIIN 131
                L S                        +   +L++DI      +    + FH  N
Sbjct: 217 ARVVYLHSERFVADMVKALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFN 276

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++ +    +++T+  +P         L SR      V I  P+ +    +++K     ++
Sbjct: 277 ALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLTVAIEPPELETRVAILMKKADQAKV 336

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +    A +I Q++  ++   E  + K+   +   G  IT+    E LK+ 
Sbjct: 337 NLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKTITQDFIRESLKDL 387


>gi|222152202|ref|YP_002561377.1| chromosomal replication initiation protein [Streptococcus uberis
           0140J]
 gi|254777917|sp|B9DSN7|DNAA_STRU0 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|222113013|emb|CAR40315.1| chromosomal replication initiator protein [Streptococcus uberis
           0140J]
          Length = 451

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 35/242 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               S D+ +       AV     + + P      + + G  G GK+ L N       + 
Sbjct: 113 NPKYSFDNFIQGDENRWAVAASLAVANTPGTTYNPLFIWGGPGLGKTHLLNAI---GNAV 169

Query: 92  RFSNIAKSLDSILIDT-----------------------RKPVLLEDIDLLD-----FND 123
              N    +  I  +                           +L++DI  L         
Sbjct: 170 LLDNPKARVKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKTLLGTQ 229

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H  +  +++T+   P         L +R K    V I+ PD +    ++ 
Sbjct: 230 EEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEQRLVTRFKWGLTVNITPPDFETRVAILT 289

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKET 242
               +      +    Y+  + + ++   E  +  +  +A       IT  +AAE ++  
Sbjct: 290 NKIQEYNFTFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKEIDKITVDIAAEAIRAR 349

Query: 243 QQ 244
           +Q
Sbjct: 350 KQ 351


>gi|326402149|ref|YP_004282230.1| chromosomal replication initiator protein DnaA [Acidiphilium
           multivorum AIU301]
 gi|325049010|dbj|BAJ79348.1| chromosomal replication initiator protein DnaA [Acidiphilium
           multivorum AIU301]
          Length = 490

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANI--WSD 86
           P     + D  +V    E A           +      + L G  G GK+ L +   W  
Sbjct: 153 PLDPRFTFDTFVVGKPNEFAYACARRVADGHASPGFNPLFLYGGVGLGKTHLMHAIAWEL 212

Query: 87  KSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLL---DFNDTQ 125
             RS   +    S +  +                  + +   ++++D+  L   D    +
Sbjct: 213 SQRSDEVTVAYMSAEKFMHKFVSALRRQSTIEFKNELRSVDVLMVDDLQFLIGKDGTQEE 272

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++      ++++A   P         L +RL    V  +     +    ++   
Sbjct: 273 FFHTFNALVDSGKQIIVSADKSPSDLSGIEDRLRTRLGCGMVADVHATTYELRLAILEAK 332

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            A   + +  ++  ++ Q++  ++   E  ++++   A      +T   A EVL +  + 
Sbjct: 333 AARAGVVVPGRVMEFLAQKITANVRELEGALNRLIAHANLFERPVTLETAHEVLHDLLRA 392


>gi|312897428|ref|ZP_07756852.1| replication initiator protein DnaA [Megasphaera micronuciformis
           F0359]
 gi|310621489|gb|EFQ05025.1| replication initiator protein DnaA [Megasphaera micronuciformis
           F0359]
          Length = 513

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 82/236 (34%), Gaps = 28/236 (11%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD------- 86
             + D  +V ++   A      I   P        + G SG GK+ L +           
Sbjct: 176 AYTFDTFVVGNSNRLAHAAAMSIAESPMTKYSPFFIYGDSGLGKTHLMHAIGHYILKHYP 235

Query: 87  --KSRSTRFSNIAKSLDSILIDTRK-----------PVLLEDIDLLDFND---TQLFHII 130
             + R     + A  L   + D               +L++DI  L+  +    + FH  
Sbjct: 236 HLRLRCITSEDFANELIQSIQDKNPESFRQRYRNIDVLLVDDIQFLESKEHTQEEFFHTF 295

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           N +++    ++ T+   P +    L D L SR +  TVV I  PD +    ++       
Sbjct: 296 NKLYKDHKQMVFTSDRPPQNIK-KLEDRLRSRFQGGTVVNIDPPDLETRTAILRNRAKIE 354

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            + IDK+   YI   +  ++   E    +    A      IT  +    L+E  + 
Sbjct: 355 HLPIDKEAIDYIASNVSENIRELEGAFIRAQMQASVENSPITLEVTQRALQELVKT 410


>gi|61212638|sp|Q72H87|DNAA_THET2 RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 436

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 93/239 (38%), Gaps = 30/239 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + ++ +V      A     +    P R    + + G  G GK+ L +     S + 
Sbjct: 103 NPKYTFENFVVGPNNSMAHAAAVAVAESPGRAYNPLFIYGGVGLGKTHLMHA-VGHSVAK 161

Query: 92  RFSNI------AKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127
           RF ++       ++  + LI+  +                +L++D+  +   +    + F
Sbjct: 162 RFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDVQFIAGKERTQEEFF 221

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++++    +++++   P         L SR +   +  I  PD +    ++     
Sbjct: 222 HTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIAILKMNAE 281

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            R + I +    YI +++  ++   E  L+  +   +L  G+ +TR++AA+ L +    
Sbjct: 282 QRGLRIPEDALEYIARQVTSNIRELEGALMRAIAFASL-NGVELTRAVAAKALSDIFAP 339


>gi|213019238|ref|ZP_03335045.1| chromosomal replication initiator protein DnaA [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995347|gb|EEB55988.1| chromosomal replication initiator protein DnaA [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 473

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 86/236 (36%), Gaps = 30/236 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V  + E A             +     + L G  G GK+ L +  +  
Sbjct: 136 PLDTRFTFDNFVVGKSNELAFTAAKRVAESIDPISGSNPLFLYGGVGLGKTHLMHAIAWD 195

Query: 86  ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123
                  K +    S          A     I++      +   ++++D+  +   D   
Sbjct: 196 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 255

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++ 
Sbjct: 256 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 315

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                  +++ K +  ++ + ++ ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 316 AKVERMNMYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLI-GRSMTVESASETL 370


>gi|190570479|ref|YP_001974837.1| chromosomal replication initiator protein DnaA [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190356751|emb|CAQ54110.1| chromosomal replication initiator protein DnaA [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 460

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 86/236 (36%), Gaps = 30/236 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V  + E A             +     + L G  G GK+ L +  +  
Sbjct: 123 PLDTRFTFDNFVVGKSNELAFTAAKRVAESIDPISGSNPLFLYGGVGLGKTHLMHAIAWD 182

Query: 86  ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123
                  K +    S          A     I++      +   ++++D+  +   D   
Sbjct: 183 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 242

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++ 
Sbjct: 243 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 302

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                  +++ K +  ++ + ++ ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 303 AKVERMNMYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLI-GRSMTVESASETL 357


>gi|311742163|ref|ZP_07715973.1| DNA-directed DNA replication initiator protein [Aeromicrobium
           marinum DSM 15272]
 gi|311314656|gb|EFQ84563.1| DNA-directed DNA replication initiator protein [Aeromicrobium
           marinum DSM 15272]
          Length = 491

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 91/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
                 ++ ++ S+   A     +    P +    +++ G SG GK+ L +         
Sbjct: 151 NPRYLFENFVIGSSNRFAHAAAVAAAEAPGKAYNPLVIHGESGLGKTHLLHAIGHYVLGL 210

Query: 87  -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
             S   R+ N  +  + ++    +               +L++DI  ++  +    + FH
Sbjct: 211 YPSSRVRYVNTEEFTNDVINAIGERRTGALKRKYREIDVLLVDDIQFIEGKEATQEEFFH 270

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  ++MT+   P +       L +R +      ++ P+ +    ++ K  + 
Sbjct: 271 TFNALHNENKQIVMTSDRPPKNLKTLEERLRNRFEWGLTTDVTPPELETRIAILRKKASS 330

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +   +  +I  +++ ++   E  + +    A  +G  +  +LA  VLK+ 
Sbjct: 331 DGLTVPADVLEFIASKVQSNIRELEGALIRATAFANLQGTTVDLNLAQIVLKDL 384


>gi|189345559|ref|YP_001942088.1| chromosomal replication initiation protein [Chlorobium limicola DSM
           245]
 gi|189339706|gb|ACD89109.1| chromosomal replication initiator protein DnaA [Chlorobium limicola
           DSM 245]
          Length = 491

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 29/235 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90
               + + L+       A     S    P       +++ G  G GK+ +     +  R+
Sbjct: 153 NTKYTFETLIRGDCNSLAFAASKSIAQNPGQNAFNPLVIYGGVGLGKTHMIQAIGNSVRT 212

Query: 91  TRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127
              S   +  S +   ID    +                  +++DI      +    ++F
Sbjct: 213 NCLSEKVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRTIDVLIIDDIQFFAGKEKTQEEIF 272

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++HQ +  ++++A             L SR        I  PD +  + +I+    
Sbjct: 273 HIFNTLHQSNKQIILSADRPIKEIKGIEDRLISRFNWGLSADIQPPDYETRKAIILSKLH 332

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241
              + +D+ +  +I   +  ++   E  +V  +   +L     I        LK+
Sbjct: 333 QSGVNLDEAVIEFIATNVTENVRELEGCIVKLLAAQSLDNQ-EIDLQFTKSTLKD 386


>gi|124384274|ref|YP_001028201.1| chromosomal replication initiation protein [Burkholderia mallei
           NCTC 10229]
 gi|126449063|ref|YP_001079584.1| chromosomal replication initiation protein [Burkholderia mallei
           NCTC 10247]
 gi|254359608|ref|ZP_04975879.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           2002721280]
 gi|166201864|sp|A3MH48|DNAA_BURM7 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166201865|sp|A2S8D2|DNAA_BURM9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|124292294|gb|ABN01563.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           NCTC 10229]
 gi|126241933|gb|ABO05026.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           NCTC 10247]
 gi|148028822|gb|EDK86754.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           2002721280]
          Length = 533

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 199 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 258

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 259 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 318

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 319 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 378

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 379 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 432


>gi|57504597|ref|ZP_00370709.1| chromosomal replication initiator protein DnaA [Campylobacter coli
           RM2228]
 gi|57019492|gb|EAL56186.1| chromosomal replication initiator protein DnaA [Campylobacter coli
           RM2228]
          Length = 440

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVI----LVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +         +     + G +G GK+ L     + S 
Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAISQKDKLGKLYNPIFIYGLTGLGKTHLLQAVGNASL 161

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128
                 I  + ++ + D                      +L++D+  L   D    + F 
Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I   D  ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I +   +  YI   +  ++   E ++  ++  A   G  IT  LA  V+K+
Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYANILGQEITLELAKSVMKD 334


>gi|89898341|ref|YP_515451.1| chromosomal replication initiation protein [Chlamydophila felis
           Fe/C-56]
 gi|89331713|dbj|BAE81306.1| chromosomal replication initiator protein [Chlamydophila felis
           Fe/C-56]
          Length = 460

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 34/238 (14%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
               ++  + LV    +   R++       +    +P   + L GP GSGK+ L      
Sbjct: 104 VNPEMTFANFLVTPENDLPFRILQEFTKPAEDSSGFPFNPIYLFGPEGSGKTHLMQAAVS 163

Query: 87  ---KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDF---NDTQ 125
              +S       ++      L+   +                + +EDI++         +
Sbjct: 164 ALRESGGKILYVVSDLFTEHLVSAIRSGEVQRFRSFYRNVDALFIEDIEVFSGKGATQEE 223

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+      +++++   P         L SR +    V I     + L   + + 
Sbjct: 224 FFHTFNSLQMEGKLIVISSAYAPADLKAMEERLISRFEWGVAVPIHPLTKEGLRSFLKRQ 283

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                I I+     ++++ +  ++      +  +            + LA ++L E  
Sbjct: 284 AEQLSIRIEDTALDFLIRALSSNVKTLIHALTLL------SKRVAYKKLAQQLLYEDD 335


>gi|295691863|ref|YP_003600473.1| chromosomal replication initiator protein dnaa [Lactobacillus
           crispatus ST1]
 gi|295029969|emb|CBL49448.1| Chromosomal replication initiator protein dnaA [Lactobacillus
           crispatus ST1]
          Length = 455

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 88/251 (35%), Gaps = 26/251 (10%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71
           + +  QP   E++           + D+ +     + A     +    P      + + G
Sbjct: 100 EAQVQQPNLPEKEFTKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFG 159

Query: 72  PSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTRK---------------PV 111
             G GK+ L         +++  +      +++  +  I++ K                +
Sbjct: 160 GVGLGKTHLMQAVGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLL 219

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI      +    + FH   +++     ++MT+   P         L SR      V
Sbjct: 220 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQV 279

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +I+ PD +    ++ +      + ID     YI  +++ ++   E  + K+   A     
Sbjct: 280 EITPPDLETRIAILRRKAETEGLTIDDGTLNYIASQVDTNIRELEGALVKVQAYATIEKA 339

Query: 229 GITRSLAAEVL 239
            I  +LA E L
Sbjct: 340 DIDVNLAREAL 350


>gi|114769644|ref|ZP_01447254.1| chromosomal replication initiation protein [alpha proteobacterium
           HTCC2255]
 gi|114549349|gb|EAU52231.1| chromosomal replication initiation protein [alpha proteobacterium
           HTCC2255]
          Length = 451

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 92/272 (33%), Gaps = 39/272 (14%)

Query: 11  FVPDKQKNDQPKNKEEQL-FFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWPSW---P 63
             P K+ + +P++K  +      P        + D+ +V    E A              
Sbjct: 84  IAPTKKSSIKPESKNTKTGSTDLPGASLDPRYTFDNFVVGKPNELAHAAARRVSEGGDVS 143

Query: 64  SRVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRK--------- 109
              + L G  G GK+ L +  +         +      A+      +   +         
Sbjct: 144 FNPLFLHGGVGLGKTHLMHAIAWEIKKRDPNARVLYLSAEQFMYRFVQALRFKDTISFKE 203

Query: 110 ------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LC 159
                  ++++D+  +        + FH  N++   +  ++++    PV     L D + 
Sbjct: 204 MFRSVDVLMVDDVQFIAGKSSTQEEFFHTFNALIDQNKQVIISGDRAPVDME-QLEDRIK 262

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAE 213
           SRL+   VV +   D +    ++     + Q      + +   +  ++ QR+  ++   E
Sbjct: 263 SRLQWGLVVDVHPTDYELRLGILQSK-QESQARYNSTVEVSPGVLEFMAQRISSNVRVLE 321

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             + ++       G  +T  +A E L +  + 
Sbjct: 322 GALTRLYAFGSLVGRPVTLEMAQESLSDILRA 353


>gi|313682853|ref|YP_004060591.1| chromosomal replication initiator protein dnaa [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155713|gb|ADR34391.1| chromosomal replication initiator protein DnaA [Sulfuricurvum
           kujiense DSM 16994]
          Length = 443

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 24/234 (10%)

Query: 33  PRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
           P     + D+ +V  + E A R   +    P      + + G  G GK+ L +   +  +
Sbjct: 108 PLNPLYTFDNFIVGGSNEFAYRAAIMASKKPGIVYNPLFIHGGVGLGKTHLMHAVGNVLK 167

Query: 90  STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFN---DTQLFH 128
                 I  S+++ L D  +                   +L++D+  L        + FH
Sbjct: 168 DYGKEVIYTSVENFLNDFSRYLRIGEMEQFKNKYRKCDLLLIDDVQFLSGKVKVQEEFFH 227

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++   +  +++T+   P         L SR +   V  I  P+ +   ++I K    
Sbjct: 228 TFEALKNENRQIIITSDQHPKKIKGIEKRLISRFEWGLVADIQSPELETKLEIIKKKCEI 287

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++     +  YI   +E +    E ++ K++  +   G+ +    A  V+K  
Sbjct: 288 NRVSFSNDIIQYIATIIENNTREIEGIITKLNAYSQLMGIEVDLEFARSVMKNQ 341


>gi|171316345|ref|ZP_02905565.1| chromosomal replication initiator protein DnaA [Burkholderia
           ambifaria MEX-5]
 gi|171098474|gb|EDT43276.1| chromosomal replication initiator protein DnaA [Burkholderia
           ambifaria MEX-5]
          Length = 525

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424


>gi|170697754|ref|ZP_02888841.1| chromosomal replication initiator protein DnaA [Burkholderia
           ambifaria IOP40-10]
 gi|170137369|gb|EDT05610.1| chromosomal replication initiator protein DnaA [Burkholderia
           ambifaria IOP40-10]
          Length = 525

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424


>gi|161506635|ref|YP_001576583.1| chromosomal replication initiation protein [Lactobacillus
           helveticus DPC 4571]
 gi|172048332|sp|A8YW41|DNAA_LACH4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|160347624|gb|ABX26298.1| Chromosomal replication initiation protein [Lactobacillus
           helveticus DPC 4571]
          Length = 455

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 86/247 (34%), Gaps = 26/247 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75
            Q K   +Q   +       + D+ +     + A     +    P      + + G  G 
Sbjct: 104 QQEKRAHKQFTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFGGVGL 163

Query: 76  GKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLED 115
           GK+ L         +++  +      +++  +  I++ K                +L++D
Sbjct: 164 GKTHLMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDD 223

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I      +    + FH   +++     ++MT+   P         L SR      V+I+ 
Sbjct: 224 IQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITP 283

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           PD +    ++ +      + ID     YI  +++ ++   E  + K+   A      I  
Sbjct: 284 PDLETRIAILRRKAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIERADINV 343

Query: 233 SLAAEVL 239
           +LA E L
Sbjct: 344 NLAREAL 350


>gi|115350057|ref|YP_771896.1| chromosomal replication initiation protein [Burkholderia ambifaria
           AMMD]
 gi|172059068|ref|YP_001806720.1| chromosomal replication initiation protein [Burkholderia ambifaria
           MC40-6]
 gi|122324479|sp|Q0BJW1|DNAA_BURCM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735785|sp|B1YPZ0|DNAA_BURA4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|115280045|gb|ABI85562.1| chromosomal replication initiator protein DnaA [Burkholderia
           ambifaria AMMD]
 gi|171991585|gb|ACB62504.1| chromosomal replication initiator protein DnaA [Burkholderia
           ambifaria MC40-6]
          Length = 525

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424


>gi|53724901|ref|YP_101862.1| chromosomal replication initiation protein [Burkholderia mallei
           ATCC 23344]
 gi|52428324|gb|AAU48917.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           ATCC 23344]
          Length = 518

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 184 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 243

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 244 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 303

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 304 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 363

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 364 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 417


>gi|326793323|ref|YP_004311143.1| Chromosomal replication initiator protein dnaA [Marinomonas
           mediterranea MMB-1]
 gi|326544087|gb|ADZ89307.1| Chromosomal replication initiator protein dnaA [Marinomonas
           mediterranea MMB-1]
          Length = 514

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 80/236 (33%), Gaps = 30/236 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D+ +   + + A      +   P      + + G  G GK+ L           
Sbjct: 180 NNSFTFDNFVEGKSNQLAHAAALQVAENPGGAYNPLFIYGGVGLGKTHLMQAVGTELMRH 239

Query: 85  ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126
                          +D  ++ + + I          +   +L++DI      D    + 
Sbjct: 240 NPNAKVVYLHSERFVADMVKALQLNAINDFKR--YYRSVDALLIDDIQFFAGKDRTQEEF 297

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++ +    +++T   +P         L SR      V +  P+ +    ++++  
Sbjct: 298 FHTFNALLEGGQQMILTCDRYPKEIQGLEDRLKSRFGWGLTVAVEPPELETRVAILMRKA 357

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +  + +    A +I Q++  ++   E  + ++   +   G  IT     E LK+ 
Sbjct: 358 EESGVKLSYDSAFFIAQKIRSNVRELEGALKRVIANSHFTGRAITPDFVRESLKDL 413


>gi|146295086|ref|YP_001178857.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145408662|gb|ABP65666.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 454

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 85/237 (35%), Gaps = 30/237 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI----DSWPSW-PSRVVILVGPSGSGKSCLANIWSDK-- 87
               + +  +V +    A        ++ P       + + G  G GK+ L +       
Sbjct: 113 NPKYTFETFVVGNNNRLAHAAALAVAETPPGEKTYNPLFIYGGVGLGKTHLMHAIGHHVL 172

Query: 88  ----------------SRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQL 126
                           +     +   +  D   +  R    +L++DI  L   +    + 
Sbjct: 173 KLYPDTKVMYVTSEIFTNELIAAIRDEKTDEFRMKYRNVDVLLIDDIQFLGGKERTQEEF 232

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++++ +  +++++   P         L SR +   +  I  PD +    ++ K  
Sbjct: 233 FHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQPPDFETRIAILSKKC 292

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LSRGMGITRSLAAEVLKE 241
                 + + +  +I  ++E ++   E  ++K+   +  ++    IT  LA + LKE
Sbjct: 293 QLEGTPVPQHILEFIASKIETNIRELEGALNKILAYSKLMAPDKEITLELAEKALKE 349


>gi|73747957|ref|YP_307196.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp.
           CBDB1]
 gi|73659673|emb|CAI82280.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp.
           CBDB1]
          Length = 444

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 89/259 (34%), Gaps = 28/259 (10%)

Query: 8   YSFFVPDKQKNDQPK-NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
           +      +     P+ NK++Q     P     + +  +V S    A     +    P + 
Sbjct: 80  FQLIQSGQVPAAVPQTNKQKQ---ESPFNPRYTFESFIVGSCNRMAHAASLAAAQNPGKS 136

Query: 67  ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV------------ 111
              + +   +G GK+ L       +   R   +  S +    D    +            
Sbjct: 137 YNPLYIYAEAGLGKTHLLQAIGHLANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRSRY 196

Query: 112 ---------LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                     ++ I   +  +  LFH  N +H  +  ++++A + P S       L SR 
Sbjct: 197 RDVDLLLLDDVQFIGGKEQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRF 256

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    ++I  PD+    +++          ++     Y+ Q ++ ++   E  ++++   
Sbjct: 257 EWGLTIEIEPPDEKTRLELLQLKAEQSGTELNMDTLEYLAQAVKHNIRELEGSLNRVLAY 316

Query: 223 ALSRGMGITRSLAAEVLKE 241
           A      IT  LAA  L +
Sbjct: 317 ARLLRAAITPDLAARALSD 335


>gi|218244895|ref|YP_002370266.1| chromosomal replication initiation protein [Cyanothece sp. PCC
           8801]
 gi|226735800|sp|B7JYF1|DNAA_CYAP8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|218165373|gb|ACK64110.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC
           8801]
          Length = 453

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 26/232 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87
               +    +V      A     +    P R    + L G  G GK+ L    +      
Sbjct: 115 NPRYTFSRFVVGPTNRMAHAASLAVAESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLEL 174

Query: 88  -SRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFH 128
              +  F    +   + LI                    +L++DI  ++  +    +LFH
Sbjct: 175 YPNAKVFYVSTEQFTNDLIAAIRQDSMERFREHYRRADFLLIDDIQFIEGKEYTQEELFH 234

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++ +   P         L SR     +  I +PD +    ++ K    
Sbjct: 235 TFNTLHEAGKQVVLASDRAPKRIPTLQDRLISRFSMGLIADIQVPDLETRMAILQKKAQY 294

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             + + + +  YI      ++   E  + +        G+ +T    A VL 
Sbjct: 295 ENMRLPRDVVEYIATNYTSNIRELEGALIRAIAYTSISGLSMTVQNIAPVLN 346


>gi|46199910|ref|YP_005577.1| chromosomal replication initiator protein dnaA [Thermus
           thermophilus HB27]
 gi|46197537|gb|AAS81950.1| chromosomal replication initiator protein dnaA [Thermus
           thermophilus HB27]
          Length = 446

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 93/239 (38%), Gaps = 30/239 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + ++ +V      A     +    P R    + + G  G GK+ L +     S + 
Sbjct: 113 NPKYTFENFVVGPNNSMAHAAAVAVAESPGRAYNPLFIYGGVGLGKTHLMHA-VGHSVAK 171

Query: 92  RFSNI------AKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127
           RF ++       ++  + LI+  +                +L++D+  +   +    + F
Sbjct: 172 RFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDVQFIAGKERTQEEFF 231

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++++    +++++   P         L SR +   +  I  PD +    ++     
Sbjct: 232 HTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIAILKMNAE 291

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            R + I +    YI +++  ++   E  L+  +   +L  G+ +TR++AA+ L +    
Sbjct: 292 QRGLRIPEDALEYIARQVTSNIRELEGALMRAIAFASL-NGVELTRAVAAKALSDIFAP 349


>gi|302329715|gb|ADL19909.1| Chromosomal replication initiation protein [Corynebacterium
           pseudotuberculosis 1002]
          Length = 603

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 101/266 (37%), Gaps = 38/266 (14%)

Query: 14  DKQKNDQPKNKEEQLFFS----FPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSR 65
           ++  +  P+ + EQ  F+           + D  +V  +       A+ + +  P+    
Sbjct: 235 EQIPSGTPRTR-EQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVAEK-PARAYN 292

Query: 66  VVILVGPSGSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----- 110
            + + G SG GK+ L +         +   R   ++      + ++S+  D ++      
Sbjct: 293 PLFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINSVRDDRQEAFKRKY 352

Query: 111 -----VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                ++++DI  L   +    + FH  N+++Q +  +++++   P         L +R 
Sbjct: 353 RELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPKQLTTLEDRLRTRF 412

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN- 221
           +A  +  I  PD +    +++K  A   I  D++    I  R   S+   E    ++   
Sbjct: 413 QAGLIADIYPPDLETRIAILMKKAASESIVADREAIELIASRFNTSIRELEGAFIRVSAY 472

Query: 222 LALSR----GMGITRSLAAEVLKETQ 243
            +L         +   +A + L++  
Sbjct: 473 ASLMSPDKGKHRVDLRIAEKALEDMM 498


>gi|227893838|ref|ZP_04011643.1| DNA-directed DNA replication initiator protein [Lactobacillus
           ultunensis DSM 16047]
 gi|227864327|gb|EEJ71748.1| DNA-directed DNA replication initiator protein [Lactobacillus
           ultunensis DSM 16047]
          Length = 460

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 29/259 (11%)

Query: 10  FFVPDKQKNDQ-PKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
              P+ Q + +  + K EQ  F          + D+ +     + A     +    P   
Sbjct: 97  IVTPEPQHDIRIRQEKREQKEFTKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSF 156

Query: 67  ---VILVGPSGSGKSCLANIWSDK-------SRSTRFSNIAKSLDSILIDTRK------- 109
              + + G  G GK+ L      +       +++    +     D I     K       
Sbjct: 157 YNPLFIFGGVGLGKTHLMQAIGHQMLVERPNAKAVYIQSETFVNDFINSIKNKTQDQFRE 216

Query: 110 ------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                  +L++DI      +    + FH   +++     ++MT+   P         L S
Sbjct: 217 KYRTCDLLLVDDIQFFTKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVS 276

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V+I+ PD +    ++ +      + ID     YI  +++ ++   E  + K+ 
Sbjct: 277 RFTWGLQVEITPPDLETRIAILRRKAEAEGLTIDDDTLDYIASQVDTNIRELEGALVKVQ 336

Query: 221 NLALSRGMGITRSLAAEVL 239
             A      I  +LA E L
Sbjct: 337 AYATIEKADINVNLAREAL 355


>gi|229496699|ref|ZP_04390413.1| chromosomal replication initiator protein DnaA [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316596|gb|EEN82515.1| chromosomal replication initiator protein DnaA [Porphyromonas
           endodontalis ATCC 35406]
          Length = 471

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 85/238 (35%), Gaps = 27/238 (11%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDS----WPSWPSRVVILVGPSGSGKSCLANI--WSDKSR 89
              + D  +   + + A+ L                 + GP G GK+ + N   W    +
Sbjct: 137 PPFTFDSFIRGESNDVALSLARRICVEPGDAMMNPFFIYGPPGVGKTHMMNAMGWEILRQ 196

Query: 90  STRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND---TQLFH 128
            +    +  +    +                        +LL+DI  L+  +      F 
Sbjct: 197 HSDLRVLYVTTLQFVQQFTAASKNKKVPDFIKYYQQIDVLLLDDIQELEGKERSQQAFFE 256

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N ++     +++T+      +      + SR+  +   +I  PD     +++ K+ + 
Sbjct: 257 IFNHLYSLGKQIVLTSDRSVSDFNALSERIVSRMAGSLTAQIKRPDLCLRREILNKLASQ 316

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             + + ++++ +IV+    S+   + ++  +   A   G  I  S + E+L  T + +
Sbjct: 317 GGVVLTEEVSDFIVKNASHSVREIDGVLSSIFLSASVTGSPIDLSFSREILSRTIRME 374


>gi|257057920|ref|YP_003135808.1| chromosomal replication initiation protein [Cyanothece sp. PCC
           8802]
 gi|256588086|gb|ACU98972.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC
           8802]
          Length = 453

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 26/232 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87
               +    +V      A     +    P R    + L G  G GK+ L    +      
Sbjct: 115 NPRYTFSRFVVGPTNRMAHAASLAVAESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLEL 174

Query: 88  -SRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFH 128
              +  F    +   + LI                    +L++DI  ++  +    +LFH
Sbjct: 175 YPNAKVFYVSTEQFTNDLIAAIRQDSMERFREHYRRADFLLIDDIQFIEGKEYTQEELFH 234

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++ +   P         L SR     +  I +PD +    ++ K    
Sbjct: 235 TFNTLHEAGKQVVLASDRAPKRIPTLQDRLISRFSMGLIADIQVPDLETRMAILQKKAQY 294

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             + + + +  YI      ++   E  + +        G+ +T    A VL 
Sbjct: 295 ENMRLPRDVVEYIATNYTSNIRELEGALIRAIAYTSISGLSMTVQNIAPVLN 346


>gi|146276060|ref|YP_001166219.1| chromosomal replication initiation protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554301|gb|ABP68914.1| chromosomal replication initiator protein DnaA [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 461

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 82/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P     + D  +V    E A                 + L G  G GK+ L +  + + +
Sbjct: 120 PLDSRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELQ 179

Query: 90  STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126
             +       L +                     L  +   ++++D+  +   D    + 
Sbjct: 180 KRQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVDDVQFIAGKDSTQEEF 239

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++ +  
Sbjct: 240 FHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKA 299

Query: 187 -----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                  R + I   +  ++  R+  ++   E  + ++   A   G  IT  LA + L +
Sbjct: 300 DFYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLAQDCLAD 359

Query: 242 TQQC 245
             + 
Sbjct: 360 ILRA 363


>gi|227877540|ref|ZP_03995601.1| DNA-directed DNA replication initiator protein [Lactobacillus
           crispatus JV-V01]
 gi|256843831|ref|ZP_05549318.1| chromosomal replication initiator protein DnaA [Lactobacillus
           crispatus 125-2-CHN]
 gi|256849614|ref|ZP_05555046.1| chromosomal replication initiator protein dnaA [Lactobacillus
           crispatus MV-1A-US]
 gi|262046282|ref|ZP_06019245.1| chromosomal replication initiator protein DnaA [Lactobacillus
           crispatus MV-3A-US]
 gi|227862863|gb|EEJ70321.1| DNA-directed DNA replication initiator protein [Lactobacillus
           crispatus JV-V01]
 gi|256613736|gb|EEU18938.1| chromosomal replication initiator protein DnaA [Lactobacillus
           crispatus 125-2-CHN]
 gi|256713730|gb|EEU28719.1| chromosomal replication initiator protein dnaA [Lactobacillus
           crispatus MV-1A-US]
 gi|260573612|gb|EEX30169.1| chromosomal replication initiator protein DnaA [Lactobacillus
           crispatus MV-3A-US]
          Length = 455

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 90/259 (34%), Gaps = 29/259 (11%)

Query: 10  FFVPDKQKN---DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
              P  +++    QP   E++           + D+ +     + A     +    P   
Sbjct: 92  IVTPAPKRDAQVQQPNLPEKEFTKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSF 151

Query: 67  ---VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTRK--------- 109
              + + G  G GK+ L         +++  +      +++  +  I++ K         
Sbjct: 152 YNPLFIFGGVGLGKTHLMQAVGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFRE 211

Query: 110 ------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                  +L++DI      +    + FH   +++     ++MT+   P         L S
Sbjct: 212 KYRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVS 271

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V+I+ PD +    ++ +      + ID     YI  +++ ++   E  + K+ 
Sbjct: 272 RFTWGLQVEITPPDLETRIAILRRKAETEGLTIDDGTLNYIASQVDTNIRELEGALVKVQ 331

Query: 221 NLALSRGMGITRSLAAEVL 239
             A      I  +LA E L
Sbjct: 332 AYATIEKADIDVNLAREAL 350


>gi|118594214|ref|ZP_01551561.1| dnaA; chromosomal replication initiator protein [Methylophilales
           bacterium HTCC2181]
 gi|118439992|gb|EAV46619.1| dnaA; chromosomal replication initiator protein [Methylophilales
           bacterium HTCC2181]
          Length = 445

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRSTRF 93
             + ++ +   A + A          P      + + G  G GK+ L +   +  ++ + 
Sbjct: 113 SFNFENFVTGKANQLACAAARQIAEKPGTTYNPLFIYGGVGLGKTHLMHAIGNHLKAIQP 172

Query: 94  SNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF---NDTQLFHII 130
           +   K L +                        +   +L++DI  +        + F+  
Sbjct: 173 NAKVKYLHAERYVHDVVKAYENKDFDSFKKNYHSLDLLLIDDIQFIAKKNRTQEEFFYAF 232

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++ +    +++T  ++P         L +R      V I  P+ +    +++K   + +
Sbjct: 233 NTLIENKKQIIITCDSYPKEIVGVDERLRTRFSWGLTVSIDPPELEMRVAILLKKALEHK 292

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I + +++A ++ +++  ++   E  ++++  ++   G  I   LA E LK+ 
Sbjct: 293 IKLSEEVAFFVAKQIRSNVRELEGALNRIVAMSNFTGKPIDLGLAKESLKDL 344


>gi|289431956|ref|YP_003461829.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp.
           GT]
 gi|288945676|gb|ADC73373.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp.
           GT]
          Length = 444

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 89/259 (34%), Gaps = 28/259 (10%)

Query: 8   YSFFVPDKQKNDQPK-NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
           +      +     P+ NK++Q     P     + +  +V S    A     +    P + 
Sbjct: 80  FQLIQSGQVPAAVPQTNKQKQ---ESPFNPRYTFESFIVGSCNRMAHAASLAAAQNPGKS 136

Query: 67  ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV------------ 111
              + +   +G GK+ L       +   R   +  S +    D    +            
Sbjct: 137 YNPLYIYAEAGLGKTHLLQAIGHLANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRSRY 196

Query: 112 ---------LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                     ++ I   +  +  LFH  N +H  +  ++++A + P S       L SR 
Sbjct: 197 RDVDLLLLDDVQFIGGKEQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRF 256

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    ++I  PD+    +++          ++     Y+ Q ++ ++   E  ++++   
Sbjct: 257 EWGLTIEIEPPDEKTRLELLQLKAEQSGTELNMDTLEYLAQAVKHNIRELEGSLNRVLAY 316

Query: 223 ALSRGMGITRSLAAEVLKE 241
           A      IT  LAA  L +
Sbjct: 317 ARLLRAAITPDLAARALSD 335


>gi|163785265|ref|ZP_02179928.1| chromosomal replication initiation protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879465|gb|EDP73306.1| chromosomal replication initiation protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 347

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 110/278 (39%), Gaps = 36/278 (12%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFP---------RCLGISRDDLLVHSAIEQA 52
           NL  +D +  V  +++ D  +N++ Q+    P              +  +L++ +  + A
Sbjct: 63  NLTGKDLAVEVISQEEVDL-RNEKSQIEKELPQDKLIRNINLNPKYTFSNLIIGNCNKIA 121

Query: 53  VRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSIL 104
            +   +    P ++   + + G  G GK+ + +  +        R+      A +  S L
Sbjct: 122 YKAAIAVAENPGKIYNPLFIYGGIGLGKTHILHATAHYMLSKNPRANIIYTTADAFMSEL 181

Query: 105 ID---------------TRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTART 146
           I                    +L++D+  L   +    + ++I N++H     +++++ T
Sbjct: 182 IAYMQKGSILDFRRRYKNIDLLLIDDVQFLVGKERTQVEFYYIFNALHLIGKQVILSSDT 241

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P         L SR  +  +V++  PD D    +I K  ++ ++ +   +  +I + + 
Sbjct: 242 PPSKLKGIQERLLSRFSSGLIVEVKPPDIDTKLSIIRKKASEMKMNLPHDVMLFIAKTVN 301

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            ++   E  + K+   +      IT  +  EVLK+  +
Sbjct: 302 TNIRELEGSLMKLKAYSEIMERQITLEMTREVLKDICE 339


>gi|225873717|ref|YP_002755176.1| chromosomal replication initiator protein DnaA [Acidobacterium
           capsulatum ATCC 51196]
 gi|225794217|gb|ACO34307.1| chromosomal replication initiator protein DnaA [Acidobacterium
           capsulatum ATCC 51196]
          Length = 478

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 96/264 (36%), Gaps = 35/264 (13%)

Query: 13  PDKQKNDQPKNK-----EEQLFFSFPR----CLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           P      +P  +      +Q  F +          + D  ++ S  + A    ++    P
Sbjct: 113 PGNAGAQRPAQRLNGAMPQQSRFDWSTAAQLNPRYTFDAFVIGSGNQFARAAAEAVAERP 172

Query: 64  SRV---VILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTR------ 108
           S+    + L G  G GK+ L +    +      S S  + ++ K  + ++   R      
Sbjct: 173 SKAYNPLFLYGGVGMGKTHLMHAIGHEVKLRNPSASICYVSVEKFTNEMISSLRYDKMTT 232

Query: 109 --------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     +L++DI  L   +    + FH  N++H+    +++ +   P         
Sbjct: 233 FRDKFRSVDLLLIDDIQFLSQKERTQEEFFHTFNALHENMKQIVIASDRPPKELPEIEDR 292

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR +   +  I  PD +    ++ K      + +   +A +I   +  ++   E  + 
Sbjct: 293 LRSRFEWGLIADIQPPDLETKVAILQKKAESEHVLLPTDVALFIASNVRTNVRELEGALT 352

Query: 218 KMDNLALSRGMGITRSLAAEVLKE 241
           ++   +   G+ I+ +   + LK+
Sbjct: 353 RLFAWSQLNGVEISLATTQQCLKQ 376


>gi|121599001|ref|YP_994142.1| chromosomal replication initiation protein [Burkholderia mallei
           SAVP1]
 gi|126451895|ref|YP_001064388.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei 1106a]
 gi|134281353|ref|ZP_01768061.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 305]
 gi|167001180|ref|ZP_02266979.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           PRL-20]
 gi|217423994|ref|ZP_03455494.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 576]
 gi|242317321|ref|ZP_04816337.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 1106b]
 gi|254184148|ref|ZP_04890739.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 1655]
 gi|254194550|ref|ZP_04900981.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei S13]
 gi|254298586|ref|ZP_04966037.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 406e]
 gi|166201866|sp|A1V7D9|DNAA_BURMS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166201867|sp|A3NPW7|DNAA_BURP0 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|121227811|gb|ABM50329.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           SAVP1]
 gi|126225537|gb|ABN89077.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 1106a]
 gi|134247020|gb|EBA47106.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 305]
 gi|157808658|gb|EDO85828.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 406e]
 gi|169651300|gb|EDS83993.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei S13]
 gi|184214680|gb|EDU11723.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 1655]
 gi|217393057|gb|EEC33079.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 576]
 gi|242140560|gb|EES26962.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 1106b]
 gi|243063007|gb|EES45193.1| chromosomal replication initiator protein DnaA [Burkholderia mallei
           PRL-20]
          Length = 533

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 199 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 258

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 259 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 318

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 319 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 378

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 379 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 432


>gi|257054090|ref|YP_003131922.1| chromosomal replication initiation protein [Saccharomonospora
           viridis DSM 43017]
 gi|256583962|gb|ACU95095.1| chromosomal replication initiator protein DnaA [Saccharomonospora
           viridis DSM 43017]
 gi|260600338|gb|ACX47006.1| chromosomal replication initiator protein DnaA [Saccharomonospora
           viridis]
          Length = 597

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 91/238 (38%), Gaps = 26/238 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90
               + D  ++ ++   A     +    PSR    + + G SG GK+ L +     ++  
Sbjct: 257 NEKYTFDTFVIGASNRFAHAAAVAVAEAPSRAYNPLFVWGESGLGKTHLLHAVGHYAQRL 316

Query: 91  -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L+  +    + FH
Sbjct: 317 FPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDILLVDDIQFLEGKEGTQEEFFH 376

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L +R +   +  I  P+ +    ++ K  A 
Sbjct: 377 TFNTLHNANKQIVVSSDRPPKRLETLEERLRTRFEWGLITDIQPPELETRIAILRKKAAQ 436

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            ++ +  ++  +I  R+E ++   E  + ++   A      +   LA  VL++    D
Sbjct: 437 DRLAVPGEVLEFIAARVEANIRELEGALIRVTAFASLNQQPVDVGLAEVVLRDLMPTD 494


>gi|188590796|ref|YP_001795396.1| chromosomal replication initiation protein [Cupriavidus taiwanensis
           LMG 19424]
 gi|226735798|sp|B2AFZ7|DNAA_CUPTR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|170937690|emb|CAP62674.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Cupriavidus taiwanensis
           LMG 19424]
          Length = 589

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 92/257 (35%), Gaps = 33/257 (12%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68
           +P  Q +D    +             ++ D+ +   A + A        + P +    + 
Sbjct: 239 MPGHQPSDTVHERSR-------LNPILTFDNFVTGKANQLARAAAIQVANNPGKSYNPLY 291

Query: 69  LVGPSGSGKSCLAN-----------------IWSDKSRSTRFSNIAKSLDSILID---TR 108
           L G  G GK+ L +                 I +++  S       +           + 
Sbjct: 292 LYGGVGLGKTHLIHSIGNHMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSL 351

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI           + F+   ++    + +++T+ T+P         L SR  + 
Sbjct: 352 DLLLIDDIQFFSGKNRTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSG 411

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             V I  P+ +    +++K  A   + + +++A ++ + +  ++   E  + K+   +  
Sbjct: 412 LTVAIEPPELEMRVAILMKKAAAENVNVPEEVAFFVAKHLRSNVRELEGALRKILAFSNF 471

Query: 226 RGMGITRSLAAEVLKET 242
            G  IT  +  E LK+ 
Sbjct: 472 HGKDITIEVTREALKDL 488


>gi|147668653|ref|YP_001213471.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp.
           BAV1]
 gi|146269601|gb|ABQ16593.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp.
           BAV1]
          Length = 444

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 89/259 (34%), Gaps = 28/259 (10%)

Query: 8   YSFFVPDKQKNDQPK-NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
           +      +     P+ NK++Q     P     + +  +V S    A     +    P + 
Sbjct: 80  FQLIQSGQVPAAVPQTNKQKQ---ESPFNPRYTFESFIVGSCNRMAHAASLAAAQNPGKS 136

Query: 67  ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV------------ 111
              + +   +G GK+ L       +   R   +  S +    D    +            
Sbjct: 137 YNPLYIYAEAGLGKTHLLQAIGHLANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRSRY 196

Query: 112 ---------LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                     ++ I   +  +  LFH  N +H  +  ++++A + P S       L SR 
Sbjct: 197 RDVDLLLLDDVQFIGGKEQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRF 256

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    ++I  PD+    +++          ++     Y+ Q ++ ++   E  ++++   
Sbjct: 257 EWGLTIEIEPPDEKTRLELLQLKAEQSGTELNMDTLEYLAQAVKHNIRELEGSLNRVLAY 316

Query: 223 ALSRGMGITRSLAAEVLKE 241
           A      IT  LAA  L +
Sbjct: 317 ARLLRAAITPDLAARALSD 335


>gi|55981942|ref|YP_145239.1| chromosomal replication initiation protein [Thermus thermophilus
           HB8]
 gi|14194700|sp|Q9X9D5|DNAA_THET8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|4572641|emb|CAB40110.1| initiator protein DnaA [Thermus thermophilus]
 gi|55773355|dbj|BAD71796.1| chromosomal replication initiator protein DnaA [Thermus
           thermophilus HB8]
          Length = 436

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 93/239 (38%), Gaps = 30/239 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + ++ +V      A     +    P R    + + G  G GK+ L +     S + 
Sbjct: 103 NPKYTFENFVVGPNNSMAHAAAVAVAESPGRAYNPLFIYGGVGLGKTHLMHA-VGHSVAK 161

Query: 92  RFSNI------AKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127
           RF ++       ++  + LI+  +                +L++D+  +   +    + F
Sbjct: 162 RFPHLRIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDVQFIAGKERTQEEFF 221

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++++    +++++   P         L SR +   +  I  PD +    ++     
Sbjct: 222 HTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIAILKMNAE 281

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            R + I +    YI +++  ++   E  L+  +   +L  G+ +TR++AA+ L +    
Sbjct: 282 QRGLRIPEDALEYIARQVTSNIRELEGALMRAIAFASL-NGVELTRAVAAKALSDIFAP 339


>gi|227506187|ref|ZP_03936236.1| chromosomal replication initiation protein [Corynebacterium
           striatum ATCC 6940]
 gi|227197211|gb|EEI77259.1| chromosomal replication initiation protein [Corynebacterium
           striatum ATCC 6940]
          Length = 537

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 96/255 (37%), Gaps = 36/255 (14%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72
           +     +   +   +       + ++ ++ S+       AV + ++ P+     + + G 
Sbjct: 184 REAPAHDPNREESLN----PKHTFENFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 238

Query: 73  SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110
           SG GK+ L +  +  + +                     ++S+  D ++           
Sbjct: 239 SGLGKTHLLH--AAGNYAQLLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 296

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  L+  +    + FH  N++HQ +  +++++   P         L +R +   +
Sbjct: 297 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 356

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    +++K  A     +D+ +   I  R E S+   E  + ++   +    
Sbjct: 357 TDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 416

Query: 228 MGITRSLAAEVLKET 242
             I+  +A   L + 
Sbjct: 417 EPISLEMAEIALHDL 431


>gi|282858609|ref|ZP_06267771.1| chromosomal replication initiator protein DnaA [Prevotella bivia
           JCVIHMP010]
 gi|282588613|gb|EFB93756.1| chromosomal replication initiator protein DnaA [Prevotella bivia
           JCVIHMP010]
          Length = 467

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 87/263 (33%), Gaps = 30/263 (11%)

Query: 13  PDKQKNDQPKNKEEQLF-FSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVV 67
           P  + N  P   +  L           S ++ +   + +  +     + +         +
Sbjct: 108 PTVRGNQSPTVIDAVLPDIDSQLDPHKSFNNYVEGDSNKMPLTIGLAIAEHPNKNQFNPL 167

Query: 68  ILVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILID 106
            + GPSG GK+ L                     A ++  +  ++  +N           
Sbjct: 168 FIYGPSGCGKTHLINAIGLKVKKLYPQKRVLYVSARLFQVQYTNSVRTNTTNDF-INFYQ 226

Query: 107 TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           T   ++++DI             FHI N + +    +++ +   PV        L +R  
Sbjct: 227 TIDVLIVDDIQEWMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLEGMNDRLLTRFV 286

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           A  + ++  P+      ++        + I + +  +I Q    S+   + +++ +   +
Sbjct: 287 AGLITELEKPNIQLCVDILHSKIKRDGLIIPENVIQFIAQTANGSVRDLQGVINSLLAYS 346

Query: 224 LSRGMGITRSLAAEVLKETQQCD 246
           +     I   LA  V+K   + D
Sbjct: 347 VVYNSSIDMRLAERVIKRAVKID 369


>gi|323524378|ref|YP_004226531.1| chromosomal replication initiator protein DnaA [Burkholderia sp.
           CCGE1001]
 gi|323381380|gb|ADX53471.1| chromosomal replication initiator protein DnaA [Burkholderia sp.
           CCGE1001]
          Length = 538

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 204 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 263

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 264 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 323

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 324 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 383

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +++ +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 384 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 437


>gi|293191011|ref|ZP_06609055.1| DnaA [Actinomyces odontolyticus F0309]
 gi|292820698|gb|EFF79664.1| DnaA [Actinomyces odontolyticus F0309]
          Length = 479

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 32/244 (13%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + D  ++  +      A       P      + + G SG GK+ L       +   
Sbjct: 135 NPKFTFDTFVIGPSNRFAHAAALAASETPGTAFNPLFIYGDSGLGKTHLLQAIGHNALSM 194

Query: 89  -------------------RSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123
                               + R +    S         + +   L++DI  +   +   
Sbjct: 195 MPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQTV 254

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
              FH  N++H  +  +++T+   P         + SR  +  +V +  PD +    ++ 
Sbjct: 255 EGFFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLETRIAILH 314

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE-T 242
           K      + +  ++  Y+  R+  ++   E  + ++   A      I  +LA  +LK+  
Sbjct: 315 KKADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDLNLAQMMLKDFV 374

Query: 243 QQCD 246
              D
Sbjct: 375 SNPD 378


>gi|294507379|ref|YP_003571437.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber
           M8]
 gi|294343707|emb|CBH24485.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber
           M8]
          Length = 564

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWS----D 86
               + D+ +       A     +    P       +++ G  G GK+ LA   +    +
Sbjct: 222 RPEYTFDEFVEGDGNRLARSAAFAVAQEPGSTNYNPLLVYGGVGLGKTHLAQAVANYALE 281

Query: 87  KSRSTRF---------SNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127
            + + R          S   +S+    I            ++++D+      +    + F
Sbjct: 282 HNTAERVLYVSSDRFTSQFVQSVRENRIAAFSSYYRQADLLIVDDVQFFGEKEKTQEEFF 341

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N +HQ    + + A   P         L SR +      I  PD +    ++ +  A
Sbjct: 342 HIFNDLHQNGKQIFLCADRPPAEIPGIEERLLSRFQWGLSADIQRPDLETRIAILQRKAA 401

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            + I +   +   I QR++ ++   E  + ++  L       +    A   L+E
Sbjct: 402 RQDIAVSPDVLELIAQRIDSNVRQLEGALTRLTALVQLDDRTLDLDTARRFLRE 455


>gi|315605508|ref|ZP_07880545.1| DNA-directed DNA replication initiator protein [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315312775|gb|EFU60855.1| DNA-directed DNA replication initiator protein [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 476

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 32/244 (13%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + D  ++  +      A       P      + + G SG GK+ L       +   
Sbjct: 132 NPKFTFDTFVIGPSNRFAHAAALAASETPGTAFNPLFIYGDSGLGKTHLLQAIGHNALSM 191

Query: 89  -------------------RSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123
                               + R +    S         + +   L++DI  +   +   
Sbjct: 192 MPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQTV 251

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
              FH  N++H  +  +++T+   P         + SR  +  +V +  PD +    ++ 
Sbjct: 252 EGFFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLETRIAILH 311

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE-T 242
           K      + +  ++  Y+  R+  ++   E  + ++   A      I  +LA  +LK+  
Sbjct: 312 KKADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDLNLAQMMLKDFV 371

Query: 243 QQCD 246
              D
Sbjct: 372 SNPD 375


>gi|221640841|ref|YP_002527103.1| chromosomal replication initiation protein [Rhodobacter sphaeroides
           KD131]
 gi|221161622|gb|ACM02602.1| Chromosomal replication initiator protein dnaA [Rhodobacter
           sphaeroides KD131]
          Length = 447

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--- 86
           P     + D  +V    E A                 + L G  G GK+ L +  +    
Sbjct: 106 PLDARFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHDLQ 165

Query: 87  --KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQL 126
             +  +      A+      +   +                ++++D+  +   D    + 
Sbjct: 166 KRQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVDDVQFIAGKDSTQEEF 225

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++ +  
Sbjct: 226 FHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKA 285

Query: 187 -----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                  R + I   +  ++  R+  ++   E  + ++   A   G  IT  LA + L +
Sbjct: 286 DFYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLAQDCLAD 345

Query: 242 TQQC 245
             + 
Sbjct: 346 ILRA 349


>gi|294053542|ref|YP_003547200.1| chromosomal replication initiator protein DnaA [Coraliomargarita
           akajimensis DSM 45221]
 gi|293612875|gb|ADE53030.1| chromosomal replication initiator protein DnaA [Coraliomargarita
           akajimensis DSM 45221]
          Length = 469

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 73/211 (34%), Gaps = 26/211 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--- 88
               + ++ +V S  + A     +  + P R    + + G +G GK+ L +  + +    
Sbjct: 131 NPRNTFENFVVGSGNQLAHAASIAVANAPGRAYNPLFVFGETGLGKTHLMHAVAHQMLVN 190

Query: 89  --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128
              +       +   +  I                    +L++DI  L   +    + FH
Sbjct: 191 NPNARIAYVSTEKFTNEFIRAIQENKLAKFRKYYRTVDALLVDDIHFLSGKESTQEEFFH 250

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N + +    + + +             L SR +   V  +  PD +    ++ K    
Sbjct: 251 TFNDLFESGRQIFLASDRPANEIERLENRLISRFQWGLVTDMQAPDYETRVAILRKKAIA 310

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             I +D  +  ++ +R+ R++   E  + ++
Sbjct: 311 MDITLDDSIVDFLAERVSRNVRRMEGALTRI 341


>gi|57239018|ref|YP_180154.1| chromosomal replication initiation protein [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58578957|ref|YP_197169.1| chromosomal replication initiation protein [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58617015|ref|YP_196214.1| chromosomal replication initiation protein [Ehrlichia ruminantium
           str. Gardel]
 gi|71151797|sp|Q5FHH8|DNAA_EHRRG RecName: Full=Chromosomal replication initiator protein DnaA
 gi|71151798|sp|Q5HBP0|DNAA_EHRRW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|57161097|emb|CAH58004.1| chromosomal replication initiator protein DnaA [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58416627|emb|CAI27740.1| Chromosomal replication initiator protein DNAA [Ehrlichia
           ruminantium str. Gardel]
 gi|58417583|emb|CAI26787.1| Chromosomal replication initiator protein DNAA [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 464

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 88/242 (36%), Gaps = 28/242 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A           S +     + L G  G GK+ L +  +  
Sbjct: 127 PLDPRFTFDNFVVGKPNELAFAAARRVAESNSPISGSNPLFLYGGVGLGKTHLMHAIAWY 186

Query: 86  --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124
                          +    ++    +S D +L   +      ++++D+  +   D    
Sbjct: 187 IIKSCSKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 246

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++  
Sbjct: 247 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQL 306

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 I I  K+  ++ + ++ ++   E  ++K+   +   G  IT   A+++L +  +
Sbjct: 307 KVEKMGINIPNKVLEFLAKNIKSNIRELEGALNKVVAHSSLVGCSITLDTASDILSDLLR 366

Query: 245 CD 246
            +
Sbjct: 367 AN 368


>gi|21672843|ref|NP_660908.1| chromosomal replication initiator protein DnaA [Chlorobium tepidum
           TLS]
 gi|38257655|sp|Q8KGG6|DNAA_CHLTE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|21645891|gb|AAM71250.1| chromosomal replication initiator protein DnaA [Chlorobium tepidum
           TLS]
          Length = 493

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 86/258 (33%), Gaps = 30/258 (11%)

Query: 13  PDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVV 67
           P ++ +  + + +  +  F        +   L+       A     S    P       +
Sbjct: 132 PGQKASAERERLEIARPRFESNLNPKYTFSTLVRGDCNSLAFAASKSIAQNPGQNAFNPL 191

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSN--IAKSLDSILIDTRKPV-------------- 111
           ++ G  G GK+ +     +     R ++  +  S +   ID    +              
Sbjct: 192 VIYGGVGLGKTHMMQAIGNSVLENRITDAVLYVSSEKFAIDFVNAIQNGNIQEFSAFYRN 251

Query: 112 ----LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
               +++DI      +    ++FHI N++HQ +  ++++A             L SR   
Sbjct: 252 IDVLIIDDIQFFAGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKEIKGIEDRLISRFNW 311

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLA 223
                I  PD +  + +I        + +D  +  +I   +  ++   E  +V  +   +
Sbjct: 312 GLSTDIQAPDYETRKAIIQSKLKQSGVSLDPVVIEFIATNVTSNVRELEGCIVKLLAAHS 371

Query: 224 LSRGMGITRSLAAEVLKE 241
           L     I    A   LK+
Sbjct: 372 LDNQ-EIDLQFAKSTLKD 388


>gi|227549437|ref|ZP_03979486.1| chromosomal replication initiation protein [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078514|gb|EEI16477.1| chromosomal replication initiation protein [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 534

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 97/255 (38%), Gaps = 36/255 (14%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72
           +     N + +   +       + ++ ++ S+       AV + ++ P+     + + G 
Sbjct: 180 RETPAHNPDREASLN----PKYTFENFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 234

Query: 73  SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110
           SG GK+ L +  +  + +                     ++S+  D ++           
Sbjct: 235 SGLGKTHLLH--AAGNYAKLLQPNLRISYVSSEEFTNDYINSVRDDRQESFKRRYRNLDI 292

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  L+  +    + FH  N++HQ +  +++++   P         L +R +   +
Sbjct: 293 LMVDDIQFLEGKEGTQEEFFHTFNALHQQNKQIILSSDRPPRQLTTLEDRLRTRFEGGLI 352

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             +  PD +    +++K  A     +D  +   I  + E S+   E  + ++   +    
Sbjct: 353 TDVQPPDLETRIAILMKKAAADGTHVDHAVLELIASQFESSIRELEGALIRVSAYSSLIN 412

Query: 228 MGITRSLAAEVLKET 242
             IT  +A   L++ 
Sbjct: 413 EPITLEVAQVALRDL 427


>gi|225867618|ref|YP_002743566.1| chromosomal replication initiator protein [Streptococcus equi
           subsp. zooepidemicus]
 gi|259645261|sp|C0MC62|DNAA_STRS7 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|225700894|emb|CAW97552.1| chromosomal replication initiator protein [Streptococcus equi
           subsp. zooepidemicus]
          Length = 450

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 89/267 (33%), Gaps = 40/267 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV 66
           +Q++   +   EQ F   P          S D+ +       AV     + + P      
Sbjct: 87  EQQHQGQQGYTEQAFQQLPAVQSDLNPKYSFDNFIQGDENRWAVAASIAVANTPGTTYNP 146

Query: 67  VILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTR 108
           + + G  G GK+ L N   +                              ++D +    R
Sbjct: 147 LFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFR 206

Query: 109 KP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
               +L++DI  L          + F+  N++H  +  +++T+   P         L +R
Sbjct: 207 NLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTR 266

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K    V I+ PD +    ++     +      +    Y+  + + ++   E  +  +  
Sbjct: 267 FKWGLTVNITPPDFETRVAILTNKIQEYNFVFPQDTIEYLAGQFDSNVRDLEGALKDI-- 324

Query: 222 LALSRGMG----ITRSLAAEVLKETQQ 244
            +L         IT  +AAE ++  +Q
Sbjct: 325 -SLVANFKQIDTITVDIAAEAIRARKQ 350


>gi|312792284|ref|YP_004025207.1| chromosomal replication initiator protein dnaa
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179424|gb|ADQ39594.1| chromosomal replication initiator protein DnaA
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 454

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 30/237 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI----DSWPSW-PSRVVILVGPSGSGKSCLANIWSDK-- 87
               + +  +V +    A        ++ P       + + G  G GK+ L +       
Sbjct: 113 NPKYTFETFVVGNNNRLAHAAALAVAETPPGERTYNPLFIYGGVGLGKTHLMHAIGHHVL 172

Query: 88  ----------------SRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQL 126
                           +     +   +  +   +  R    +L++DI  L   +    + 
Sbjct: 173 KLYPGTKVMYVTSEIFTNELIAAIRDEKTNEFRLKYRNVDVLLIDDIQFLGGKERTQEEF 232

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++++ +  +++++   P         L SR +   +  I  PD +    ++ K  
Sbjct: 233 FHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQPPDFETRIAILSKKC 292

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LSRGMGITRSLAAEVLKE 241
                 + + +  +I  ++E ++   E  ++K+   +  ++    IT  LA + LKE
Sbjct: 293 QLEGTPVPQHILEFIASKIETNIRELEGALNKILAYSKLMAPDKEITLELAEKALKE 349


>gi|288802026|ref|ZP_06407467.1| DNA replication initiator protein, ATPase [Prevotella
           melaninogenica D18]
 gi|288335461|gb|EFC73895.1| DNA replication initiator protein, ATPase [Prevotella
           melaninogenica D18]
          Length = 468

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 88/281 (31%), Gaps = 36/281 (12%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLF---------FSFPRCLGISRDDLLVHSAI--- 49
           N + +D      +   + +P  +  Q                    S  + +   +    
Sbjct: 89  NHLSQDLEQDTVEDISSQRPTARANQSPTVLDTVPQDLDSQLDPHKSFSNYVEGDSNKLP 148

Query: 50  -EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-- 106
               + + +   +     + + GPSG GK+ L N    +++          + + L    
Sbjct: 149 RSIGLSIAEHPNTTQFNPMFIYGPSGCGKTHLVNAIGLRAKQLYPQKRVLYVSARLFQVQ 208

Query: 107 ------------------TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTAR 145
                             T   ++++DI             FHI N + +    +++ + 
Sbjct: 209 YTDSVRQNTTNDFINFYQTIDILIVDDIQEWVTATKTQDTFFHIFNHLFRNGKRIILASD 268

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             PV        L +R     + ++  P+      ++        + I + +  +I +  
Sbjct: 269 RPPVDLKGMNDRLLTRFSCGLIAELEKPNVQLCVDILHSKIKRDGLNIPEDVVRFIAETA 328

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             S+   + +++ +   ++     I   LA  V+K   + D
Sbjct: 329 NGSVRDLQGVINSLLAYSVVYNSNIDMRLAERVIKRAVKID 369


>gi|160941462|ref|ZP_02088797.1| hypothetical protein CLOBOL_06353 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435608|gb|EDP13375.1| hypothetical protein CLOBOL_06353 [Clostridium bolteae ATCC
           BAA-613]
          Length = 456

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 84/236 (35%), Gaps = 29/236 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLID---SWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
               + D  +V      A          P      + + G  G GK+ L +  +      
Sbjct: 117 NPKYTFDTFVVGGNNNLAHAAALAVAESPGEIYNPLFIYGGVGLGKTHLMHAIAHFILKN 176

Query: 87  KSRSTRFSNIAKSLDSILIDT------------------RKPVLLEDIDLLDFND---TQ 125
            ++S      +++  + LID                      +L++DI  +   +    +
Sbjct: 177 NAKSKILYVTSETFTNELIDAIRNKNNITTTEFREKYRNNDVLLIDDIQFIIGKESTQEE 236

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++++    +++++   P         L SR +    V I  PD +    ++ K 
Sbjct: 237 FFHTFNTLYESKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK 296

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                  ID ++  YI   ++ ++   E  + K+  L+      IT  LA E LK+
Sbjct: 297 EEMEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLNKCDITLELAEEALKD 352


>gi|300934349|ref|ZP_07149605.1| chromosomal replication initiation protein [Corynebacterium
           resistens DSM 45100]
          Length = 584

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 77/207 (37%), Gaps = 26/207 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTR-- 92
            + +  ++ S+   A     +    P++    + + G SG GK+ L +     ++  R  
Sbjct: 250 YTFETFVIGSSNNFANAACRAVAESPAKAYNPLFIWGESGLGKTHLLHAIGHYAKELRPN 309

Query: 93  ---------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIIN 131
                           ++IA           + V   +++DI  L+  +    + FH  N
Sbjct: 310 MRVRYVSSEELTNDFINSIATDTREAFKRRYRNVDMLIVDDIQFLEGKESTQEEFFHTFN 369

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++HQ +  +++++   P         L +R +      ++ PD +    ++ K      I
Sbjct: 370 ALHQANKQIVLSSDRPPKKLTTLEDRLRTRFEGGLTTDVTSPDLETRIAILSKKAQLEGI 429

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDK 218
            + + +   I  R + S+   E  + +
Sbjct: 430 QLPEDVKQLIANRYDTSIRVLEGALIR 456


>gi|330994264|ref|ZP_08318192.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter
           sp. SXCC-1]
 gi|329758731|gb|EGG75247.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter
           sp. SXCC-1]
          Length = 476

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 87/253 (34%), Gaps = 26/253 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSG 74
           ++P+  E +   + P     + D  +V    E A          PS      + L G  G
Sbjct: 126 EEPRPAEVRTDLAAPLDQRFTFDTFVVGKPNEFAYACARRVAEQPSSPGFNPLFLYGGVG 185

Query: 75  SGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLED 115
            GK+ L + I ++  R  R S    S +  +      +                  +++D
Sbjct: 186 LGKTHLMHSIGAELVREGRVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDD 245

Query: 116 IDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +  L   D    + FH  N++      ++++A   P         L +RL    V  I  
Sbjct: 246 LQFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHA 305

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
              +    ++        + +  K+  ++  ++  ++   E  ++++   A   G  +T 
Sbjct: 306 TTFELRISILEAKATASGVVVPAKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTL 365

Query: 233 SLAAEVLKETQQC 245
               +VL +  + 
Sbjct: 366 EATQDVLHDILKA 378


>gi|254186619|ref|ZP_04893136.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157934304|gb|EDO89974.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 533

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 199 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 258

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 259 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 318

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 319 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 378

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 379 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 432


>gi|53717714|ref|YP_106700.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei K96243]
 gi|76810636|ref|YP_331717.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei 1710b]
 gi|126441420|ref|YP_001057144.1| chromosomal replication initiation protein [Burkholderia
           pseudomallei 668]
 gi|254259753|ref|ZP_04950807.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 1710a]
 gi|61212530|sp|Q63YW5|DNAA_BURPS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123771937|sp|Q3JXI6|DNAA_BURP1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166201868|sp|A3N473|DNAA_BURP6 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|52208128|emb|CAH34058.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei K96243]
 gi|76580089|gb|ABA49564.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 1710b]
 gi|126220913|gb|ABN84419.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 668]
 gi|254218442|gb|EET07826.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei 1710a]
          Length = 533

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 199 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 258

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 259 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 318

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 319 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 378

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 379 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 432


>gi|90408442|ref|ZP_01216602.1| chromosomal replication initiation protein [Psychromonas sp. CNPT3]
 gi|90310426|gb|EAS38551.1| chromosomal replication initiation protein [Psychromonas sp. CNPT3]
          Length = 386

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 80/233 (34%), Gaps = 27/233 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN------IWSDK 87
             + D+ +   +   A+         P      + L    G GK+ L +      + ++ 
Sbjct: 53  KYTFDNFVEGKSNNFAIATTQQIAENPGDVYNPLFLYAHPGLGKTHLLHAVGNAIVAANP 112

Query: 88  SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDIDLLDF---NDTQLFHII 130
                +    + +  ++                +   +L++DI        +   LF   
Sbjct: 113 ESKVVYIRSERFVQDMINSIRNNTIEQFKEYYASLDALLIDDIHFFAGKDRSQEVLFQTF 172

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           NS+      +++T+  FP         L +R      + I  P+ +    +++    +R 
Sbjct: 173 NSMLDAHQQVILTSDRFPKEIEGIDERLRTRFGWGLSIPIDPPELETRVAILITKAEERG 232

Query: 191 IFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +   +A +I +R+    +   E  +  +   A   G  IT SL  + L++ 
Sbjct: 233 LVLPDDVAFFIAKRLTITDVRVLEGAIANISAKAQFTGQDITISLVQDALRDM 285


>gi|325106587|ref|YP_004267655.1| Chromosomal replication initiator protein dnaA [Planctomyces
           brasiliensis DSM 5305]
 gi|324966855|gb|ADY57633.1| Chromosomal replication initiator protein dnaA [Planctomyces
           brasiliensis DSM 5305]
          Length = 568

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 89/260 (34%), Gaps = 40/260 (15%)

Query: 13  PDKQKNDQP--KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVV 67
           P  QK   P  + +  QL            DD +       A+ +   +   P      +
Sbjct: 212 PGGQKAKLPPRRRRFAQL------------DDFVAEENNHVALSMARVVAQEPGENYNPL 259

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------------T 107
              G  G+GK+ L      ++R      +   L +                        +
Sbjct: 260 YFYGGVGTGKTHLLEGIHSETRQLYPELMVMYLTAEAFANYYTKALREKSLPSFRRRFRS 319

Query: 108 RKPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++D+D LD       +  H I  +  Y   +++ A   P        DLCSR  A
Sbjct: 320 IDVLLVDDVDFLDSKKGIQEEFCHTIQELLAYRRQIVLAADRHPRMLTNIRQDLCSRFLA 379

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             V ++  PD+   ++++ +      + I  +   YI ++  RS       V+ +     
Sbjct: 380 GLVTRLEAPDEQSRQEIVRQQAKKVGLPISPEAVDYISRKFTRSARELLGAVNCLQTYHH 439

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  I  +   EVLK+ ++
Sbjct: 440 LTGRAIGVTATREVLKDLER 459


>gi|115372312|ref|ZP_01459622.1| chromosomal replication initiator protein DnaA [Stigmatella
           aurantiaca DW4/3-1]
 gi|115370777|gb|EAU69702.1| chromosomal replication initiator protein DnaA [Stigmatella
           aurantiaca DW4/3-1]
          Length = 388

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 91/236 (38%), Gaps = 31/236 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86
               +    +V  + +       +    P      + + G +G GK+ L +     IW +
Sbjct: 54  SPRFTFGTFVVADSNQLPAAAAAAVADKPGHHYNPLYIYGGTGLGKTHLLHAVGNLIW-E 112

Query: 87  KSRSTRFSNIAKS-----------------LDSILIDTRKPVLLEDIDLLDFNDT---QL 126
           ++ + R   ++                         D    +L++DI  L   +    + 
Sbjct: 113 RNPAQRVVYLSSEQFTNEYVESVREHRMTEFRRKFRDECDVLLIDDIQFLGKREETQKEF 172

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N++++ + ++++T+ T P         L SR     +  I  P  +    ++ K  
Sbjct: 173 FYTFNTLYEQNKAIVLTSDTVPSEIPGLEDRLRSRFAMGLLTDIREPSYETRVAILQKKA 232

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGITRSLAAEVLKE 241
               + +   +A +I + +++++   E  + K+    +LSR   +T   AA+VLK+
Sbjct: 233 EAEGLGLPDDVAHFIAKHIQKNVRELEGALVKLSAIHSLSRL-PVTVEFAAQVLKD 287


>gi|83814277|ref|YP_445493.1| chromosomal replication initiator protein DnaA [Salinibacter ruber
           DSM 13855]
 gi|83755671|gb|ABC43784.1| chromosomal replication initiator protein DnaA [Salinibacter ruber
           DSM 13855]
          Length = 564

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWS----D 86
               + D+ +       A     +    P       +++ G  G GK+ LA   +    +
Sbjct: 222 RPEYTFDEFVEGDGNRLARSAAFAVAQEPGSTNYNPLLVYGGVGLGKTHLAQAVANYALE 281

Query: 87  KSRSTRF---------SNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127
            + + R          S   +S+    I            ++++D+      +    + F
Sbjct: 282 HNTAERVLYVSSDRFTSQFVQSVRENRIAAFSSYYRQADLLIVDDVQFFGEKEKTQEEFF 341

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N +HQ    + + A   P         L SR +      I  PD +    ++ +  A
Sbjct: 342 HIFNDLHQNGKQIFLCADRPPAEIPGIEERLLSRFQWGLSADIQRPDLETRIAILQRKAA 401

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            + I +   +   I QR++ ++   E  + ++  L       +    A   L+E
Sbjct: 402 RQDIAVSPDVLELIAQRIDSNVRQLEGALTRLTALVQLDDRTLDLDTARRFLRE 455


>gi|148653240|ref|YP_001280333.1| DNA replication initiation ATPase-like protein [Psychrobacter sp.
           PRwf-1]
 gi|148572324|gb|ABQ94383.1| regulatory inactivation of DnaA Hda protein [Psychrobacter sp.
           PRwf-1]
          Length = 270

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 75/206 (36%), Gaps = 14/206 (6%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL  +       S  D          +  +          + + G + +GK+ L +   +
Sbjct: 4   QLSLNLEVRKDASLSDFA-GPGWSTLIDAVRQMHVGLIGQMYIFGSAATGKTHLLSAICE 62

Query: 87  KSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134
                  S I  SL  +L         +++   V ++D++ +  +      +FH+IN   
Sbjct: 63  SYMEMDKSAICLSLKELLHTDVAVLASLESFDLVAIDDLEAIKDSREWQEAIFHLINRSR 122

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFI 193
           +    L+  A+T        LPDL +RL  +   ++    D    + ++  +   R    
Sbjct: 123 EGRGQLIFAAKTPATELPFELPDLLTRLIQSPAFRVPEGHDIADRKAMLESIMRRRGWQF 182

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKM 219
           D ++  ++++     +     +++ +
Sbjct: 183 DSRITEHLLEEGPHRIGGMLDVLNVI 208


>gi|297582339|ref|YP_003698119.1| chromosomal replication initiator protein DnaA [Bacillus
           selenitireducens MLS10]
 gi|297140796|gb|ADH97553.1| chromosomal replication initiator protein DnaA [Bacillus
           selenitireducens MLS10]
          Length = 451

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 77/213 (36%), Gaps = 30/213 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-----D 86
               + D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 116 NTKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVVDH 175

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      ++   +  I++ +                +L++DI  L   +    + FH
Sbjct: 176 NPDAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDILLIDDIQFLAGKEQTQEEFFH 235

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 236 TFNALHEERKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 295

Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVD 217
             + I K++  YI  +++   R L     ++V 
Sbjct: 296 ENLDIPKEVMNYIANQIDTNIRELEGALIRVVA 328


>gi|192359033|ref|YP_001980525.1| chromosomal replication initiation protein [Cellvibrio japonicus
           Ueda107]
 gi|190685198|gb|ACE82876.1| chromosomal replication initiator protein DnaA [Cellvibrio
           japonicus Ueda107]
          Length = 534

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 26/226 (11%)

Query: 43  LLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
            +   + +    A R +   P      + + G  G GK+ L     +   +   +     
Sbjct: 208 FVEGKSNQLGLAAARQVAENPGGAYNPLFIYGGVGLGKTHLMQAVGNAMVARNPNAKVVY 267

Query: 100 LDSILIDTR--------------------KPVLLEDIDLLDFND---TQLFHIINSIHQY 136
           L S                            +L++DI      +    + FH  NS+ + 
Sbjct: 268 LHSERFVADMVKALQLNAINDFKRYYRSMDALLIDDIQFFAGKERSQEEFFHTFNSLLEG 327

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              +++T   FP         L SR      V +  P+ +    +++K      I +  +
Sbjct: 328 GRQIILTCDRFPKEINGLEERLKSRFGWGLTVAVEPPELETRVAILIKKAEQANIDLPHE 387

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            A +I QR+  ++   E  + ++   A   G  I   L  E LK+ 
Sbjct: 388 AAFFIAQRIRANVRDLEGALKRVIASANFTGRSIDVELVREALKDL 433


>gi|146328959|ref|YP_001208941.1| chromosomal replication initiator protein [Dichelobacter nodosus
           VCS1703A]
 gi|146232429|gb|ABQ13407.1| chromosomal replication initiator protein [Dichelobacter nodosus
           VCS1703A]
          Length = 442

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 87/266 (32%), Gaps = 36/266 (13%)

Query: 9   SFFVPDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----P 63
           + F   KQ ND  P                   ++ +V  + + A   +           
Sbjct: 85  NLFTQRKQSNDFAPTFNSR-------LNPHYQFENFIVGKSNDNAYAAVHRVSKGLLSED 137

Query: 64  SRVVILVGPSGSGKSCLANIW----------------SDKSRSTRFSNIAKSLDSI---- 103
              +++ G +G GKS L +                  +++  +   + I      +    
Sbjct: 138 FNPLLIYGGTGLGKSHLMHAAGNALCQNGKKRVMYLTAEEFTNDYINAIKNPKREMSDFI 197

Query: 104 -LIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
                   +L++D+  L     +  + FH  NS+      +++T   FP         L 
Sbjct: 198 NFYRNADALLIDDVQFLSGKNRSQEEFFHTFNSLFDKKRQIILTCDRFPKEIEGLADRLK 257

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SR  +   V ++ PD +    ++          + K++  YI +++  ++   E  + K+
Sbjct: 258 SRFGSGLTVSVAPPDYETRIAILQSKAERLHFSLPKEVEEYIAEKVTSNIRDLEGALRKV 317

Query: 220 DNLALSRGMGITRSLAAEVLKETQQC 245
                     IT  +A   L +  Q 
Sbjct: 318 YAYCEFNHEIITLDIARNALNDLIQA 343


>gi|29653365|ref|NP_819057.1| chromosomal replication initiation protein [Coxiella burnetii RSA
           493]
 gi|154706441|ref|YP_001423440.1| chromosomal replication initiation protein [Coxiella burnetii
           Dugway 5J108-111]
 gi|161830473|ref|YP_001595901.1| chromosomal replication initiation protein [Coxiella burnetii RSA
           331]
 gi|164685862|ref|ZP_01947694.2| chromosomal replication initiator protein DnaA [Coxiella burnetii
           'MSU Goat Q177']
 gi|165924211|ref|ZP_02220043.1| chromosomal replication initiator protein DnaA [Coxiella burnetii
           RSA 334]
 gi|212211670|ref|YP_002302606.1| chromosomal replication initiation protein [Coxiella burnetii
           CbuG_Q212]
 gi|212217689|ref|YP_002304476.1| chromosomal replication initiation protein [Coxiella burnetii
           CbuK_Q154]
 gi|38257444|sp|Q83FD8|DNAA_COXBU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189044636|sp|A9KEU8|DNAA_COXBN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189044637|sp|A9N900|DNAA_COXBR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735796|sp|B6J8S3|DNAA_COXB1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735797|sp|B6J287|DNAA_COXB2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|29540627|gb|AAO89571.1| chromosomal replication initiator protein [Coxiella burnetii RSA
           493]
 gi|154355727|gb|ABS77189.1| chromosomal replication initiator protein [Coxiella burnetii Dugway
           5J108-111]
 gi|161762340|gb|ABX77982.1| chromosomal replication initiator protein DnaA [Coxiella burnetii
           RSA 331]
 gi|164601379|gb|EAX31682.2| chromosomal replication initiator protein DnaA [Coxiella burnetii
           'MSU Goat Q177']
 gi|165916345|gb|EDR34949.1| chromosomal replication initiator protein DnaA [Coxiella burnetii
           RSA 334]
 gi|212010080|gb|ACJ17461.1| chromosomal replication initiator protein [Coxiella burnetii
           CbuG_Q212]
 gi|212011951|gb|ACJ19331.1| chromosomal replication initiator protein [Coxiella burnetii
           CbuK_Q154]
          Length = 451

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 80/231 (34%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----------- 83
            + D  +   + + A          P +    + + G  G GK+ L +            
Sbjct: 120 FTFDSFVEGKSNQLARAAATQVAENPGQAYNPLFIYGGVGLGKTHLMHAVGNAILRKDSS 179

Query: 84  ------WSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLDF---NDTQLFHIIN 131
                  S++  +     +  +  +       +   +L++DI        +  + FH  N
Sbjct: 180 KKVLYLHSERFVADMIKALQHNAMNEFKRFYRSLNALLIDDIQFFAGKDRSQEEFFHTFN 239

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++      +++T   +P         L SR      V I  P+ +    +++      ++
Sbjct: 240 ALLDGQQQIILTCDRYPKEINGLEERLQSRFGWGLTVAIEPPELETRVAILMSKAEQLKV 299

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +  ++A +I + ++ ++   E  + ++   A   G  IT     E LK+ 
Sbjct: 300 HLPHEVAFFIAKHIQSNVRELEGALKRVIANAHFTGQSITVDFTREALKDL 350


>gi|297564485|ref|YP_003683457.1| chromosomal replication initiator protein DnaA [Meiothermus
           silvanus DSM 9946]
 gi|296848934|gb|ADH61949.1| chromosomal replication initiator protein DnaA [Meiothermus
           silvanus DSM 9946]
          Length = 439

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 94/261 (36%), Gaps = 29/261 (11%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66
            VP     +   +   Q     PR       + ++ +V      A     +    P +  
Sbjct: 79  VVPGNPVQEDIFSAPVQAPAPDPRSRLNPKYTFENFVVGQNNRLAHAAAMAVAESPGKAY 138

Query: 67  --VILVGPSGSGKSCLANIWSDKSRST-----------------RFSNIAKSLDSILIDT 107
             + + G  G GK+ L +       +                    + I +   +   + 
Sbjct: 139 NPLFIYGGVGLGKTHLMHAVGHSVAARFPSLRIEYVSTETFTNELINAIREDRMTEFRER 198

Query: 108 RKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            + V   L++DI  +   +    + FH  N++++    +++++   P         L SR
Sbjct: 199 YRSVDLLLVDDIQFVAGKERTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSR 258

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            +   +  I  P+ +    ++      R + I +++  YI +++  ++   E  + ++  
Sbjct: 259 FEWGLITDIQPPELETRIAILKMNSEYRSMRIPEEVLEYIARQVTSNIRELEGALMRVIA 318

Query: 222 LALSRGMGITRSLAAEVLKET 242
            A   G+ IT+++AA  L + 
Sbjct: 319 YASLNGVEITKNVAARALSDV 339


>gi|302346167|ref|YP_003814465.1| chromosomal replication initiator protein DnaA [Prevotella
           melaninogenica ATCC 25845]
 gi|302150481|gb|ADK96742.1| chromosomal replication initiator protein DnaA [Prevotella
           melaninogenica ATCC 25845]
          Length = 468

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 88/281 (31%), Gaps = 36/281 (12%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLF---------FSFPRCLGISRDDLLVHSAI--- 49
           N + +D      +   + +P  +  Q                    S  + +   +    
Sbjct: 89  NHLSQDLEQDTVEDISSQRPTARANQSPTVLDTVPQDLDSQLDPHKSFSNYVEGDSNKLP 148

Query: 50  -EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-- 106
               + + +   +     + + GPSG GK+ L N    K++          + + L    
Sbjct: 149 RSIGLSIAEHPNTTQFNPMFIYGPSGCGKTHLVNAIGLKAKQLYPQKRVLYVSARLFQVQ 208

Query: 107 ------------------TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTAR 145
                             T   ++++DI             FHI N + +    +++ + 
Sbjct: 209 YTDSVRQNTTNDFINFYQTIDILIVDDIQEWVTATKTQDTFFHIFNHLFRNGKRIILASD 268

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             PV        L +R     + ++  P+      ++        + I + +  +I +  
Sbjct: 269 RPPVDLKGMNDRLLTRFSCGLIAELEKPNVQLCVDILHSKIKRDGLNIPEDVVRFIAETA 328

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             S+   + +++ +   ++     I   LA  V+K   + D
Sbjct: 329 NGSVRDLQGVINSLLAYSVVYNSNIDMRLAERVIKRAVKID 369


>gi|297622253|ref|YP_003703687.1| chromosomal replication initiator protein DnaA [Truepera
           radiovictrix DSM 17093]
 gi|297163433|gb|ADI13144.1| chromosomal replication initiator protein DnaA [Truepera
           radiovictrix DSM 17093]
          Length = 444

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 78/237 (32%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
                  + +V      A     +    P R    + + G +G GK+ L +         
Sbjct: 111 NPKYVFSNFVVGPNNNLASAAALAVAEAPGRAYNPLFIYGDAGLGKTHLMHAVGHAVAER 170

Query: 92  R-----------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                              + I +   +   D  + V   L++D+  +   +    + FH
Sbjct: 171 LPQLYIEYVTTEAFTNDLINAIREDRMTAFRDRYRSVDVLLVDDVQFIAGKERTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++++   P         L SR +   +  I  P+ +    ++      
Sbjct: 231 TFNALYESGKQIILSSDRPPKDIPTLENRLRSRFEWGLITDIQAPELETRIAILKMNAEY 290

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           R + I   +  YI +++  ++   E  + ++   A    + + R   A  L +    
Sbjct: 291 RGVKIPPDVIDYIARQVTSNIRELEGALVRVILYASMNQVELNRQTVAAALSDVYAP 347


>gi|886325|gb|AAB53141.1| chromosomal replication initiator protein [Mycobacterium leprae]
          Length = 521

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 87/233 (37%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + +  ++ ++   A R   +    P+R    + + G SG GK+ L +  +       F
Sbjct: 185 RYTFETFVIGASNRFAHRAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 243

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 244 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 303

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 304 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 363

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 364 RLAVPGDVLELIASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDL 416


>gi|329116547|ref|ZP_08245264.1| chromosomal replication initiator protein DnaA [Streptococcus
           parauberis NCFD 2020]
 gi|326906952|gb|EGE53866.1| chromosomal replication initiator protein DnaA [Streptococcus
           parauberis NCFD 2020]
          Length = 453

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 35/242 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
                 D+ +       AV     + + P      + + G  G GK+ L N   +     
Sbjct: 114 NPKYGFDNFIQGDENRWAVAASIAVANTPGSTYNPLFIWGGPGLGKTHLLNAIGNSVLQD 173

Query: 92  RFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLD-----FNDTQL 126
                 K + +                     +      +L++DI  L          + 
Sbjct: 174 NPHARVKYISAENFINEFVTHIRLDKMDELKEVFRNLDLLLIDDIQSLAKKTLAVTQEEF 233

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N++H  +  +++T+   P         L +R K    V I+ PD +    ++    
Sbjct: 234 FNTFNALHNNNKQIVLTSDRTPDHLNDLEERLVTRFKWGLTVNITPPDFETRVAILTNKI 293

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG----ITRSLAAEVLKET 242
            D      +    Y+  + + S+   E  +  +   +L         I+  LAAE ++  
Sbjct: 294 QDYSFTFPQSTIEYLAGQFDSSVRDLEGALKDI---SLVANFKQIDVISVELAAEAIRAR 350

Query: 243 QQ 244
           +Q
Sbjct: 351 KQ 352


>gi|91781385|ref|YP_556591.1| chromosomal replication initiation protein [Burkholderia xenovorans
           LB400]
 gi|123359273|sp|Q147F0|DNAA_BURXL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|91685339|gb|ABE28539.1| chromosomal replication initiator protein DnaA [Burkholderia
           xenovorans LB400]
          Length = 544

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 210 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 269

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 270 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 329

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 330 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 389

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +++ +A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 390 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVTKEALKDL 443


>gi|226193147|ref|ZP_03788757.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei Pakistan 9]
 gi|225934747|gb|EEH30724.1| chromosomal replication initiator protein DnaA [Burkholderia
           pseudomallei Pakistan 9]
          Length = 506

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 172 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 231

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 232 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 291

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 292 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 351

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 352 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 405


>gi|224477956|ref|YP_002635562.1| chromosomal replication initiation protein [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254777913|sp|B9DPX4|DNAA_STACT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|222422563|emb|CAL29377.1| chromosomal replication initiator protein [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 453

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91
            +  ++         A   +   P+     + + G  G GK+ L +            + 
Sbjct: 122 FETFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLENNRDAK 181

Query: 92  RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133
                ++   +  I + +                +L++DI  +   +    + FH  N +
Sbjct: 182 VIYTSSEKFTNEFIKSIRDNETEQFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNDL 241

Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           HQ    +++++   P      L D L SR +   +V I+ PD +    ++ K   +  + 
Sbjct: 242 HQTGKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKLEEEDVD 300

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           I  +   YI  +++ ++   E  + ++   +  +   IT  L AE LK+  Q 
Sbjct: 301 IPLESLTYIANQIQSNIRELEGALTRVIAYSRLQNEAITTELTAEALKDIIQT 353


>gi|300726801|ref|ZP_07060231.1| chromosomal replication initiator protein DnaA [Prevotella bryantii
           B14]
 gi|299775914|gb|EFI72494.1| chromosomal replication initiator protein DnaA [Prevotella bryantii
           B14]
          Length = 469

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 86/261 (32%), Gaps = 33/261 (12%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVI 68
           P      +P++    L         ++ D+ L   +        V + +   +       
Sbjct: 116 PSVSDAAKPQDIPSHL------NNRLTFDNYLEGESNKLTRTVGVSIAEHPYNSQFNPFF 169

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLED-----------I 116
           + GPSG GK+ L N    K +     +    + + L        +LE+           I
Sbjct: 170 IYGPSGCGKTHLVNAIGLKIKKLYPDSRVLYISAKLFSVQYTQAVLENHTNDFIAFYQTI 229

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           D L  +D              FHI N + + +  +++     PVS       + +R    
Sbjct: 230 DTLIIDDVQEWMGKTKTLETFFHIFNHLFRNNKRIILACDRPPVSLTGMPDRMLTRFSCG 289

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            + ++  P+      ++        + I   +  YI Q    S+   +  ++++   ++ 
Sbjct: 290 LIAEMEKPNVQLCIDIMKHKMRRDGLDIHDDVLTYIAQNANCSVRDLQGTINQLLAYSIV 349

Query: 226 RGMGITRSLAAEVLKETQQCD 246
               I   LA   ++   + D
Sbjct: 350 YNSKIDIKLAKRCIERAVKVD 370


>gi|294675558|ref|YP_003576173.1| chromosomal replication initiator protein DnaA [Rhodobacter
           capsulatus SB 1003]
 gi|294474378|gb|ADE83766.1| chromosomal replication initiator protein DnaA [Rhodobacter
           capsulatus SB 1003]
          Length = 457

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--K 87
           P     + D  +V    E A                 + L G  G GK+ L +  +   +
Sbjct: 116 PLDARFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELQ 175

Query: 88  SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126
           ++      +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 176 TQHGELRVLYLSAEQFMYRFVQALRDRQIMDFKELFRSVDVLMVDDVQFIAGKDSTQEEF 235

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV--- 183
           FH  N++      ++++A   P         + SRL+   VV +   D +    ++    
Sbjct: 236 FHTFNALVDQGKQIVISADRAPGEIKDLEDRIKSRLQCGLVVDLHPTDYELRLGILQTKT 295

Query: 184 --KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                 +  + +   +  ++  R+  ++   E  + ++   A   G  IT  LA E L +
Sbjct: 296 EIHAARNPGLVVASGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLAQECLAD 355

Query: 242 TQQC 245
             + 
Sbjct: 356 ILRA 359


>gi|257461143|ref|ZP_05626241.1| chromosomal replication initiator protein DnaA [Campylobacter
           gracilis RM3268]
 gi|257441517|gb|EEV16662.1| chromosomal replication initiator protein DnaA [Campylobacter
           gracilis RM3268]
          Length = 442

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN---IWSDKS 88
               + ++ ++  + + A     S    P      + + GPSG GK+ L      +  K 
Sbjct: 104 SENYNFENFIIGDSNKFAFECSVSVAKEPGIRFNPLFIYGPSGLGKTHLLQSIGNYCIKK 163

Query: 89  RSTRFSNIAKSL--DSILIDTRKPV-------------LLEDIDLL---DFNDTQLFHII 130
             T     ++    D +       +             L++DI  L   D    +LF+  
Sbjct: 164 GKTVICVTSEQFANDFVFNLKNNSIDKFKQKYRNCDVLLIDDIQFLIGRDKAQEELFYTF 223

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +   +  +++T    P         L +R ++  +  I+ P+ +    +I K   + +
Sbjct: 224 NELKDKNCQIVLTNDLPPKFLKGFENRLTTRFESGIIANITPPNLETKIAIINKKSEENR 283

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + I   +  YI   M  ++   E  ++K++  +      IT       L++ 
Sbjct: 284 VRIPHDVVEYIAANMGDNIREIEGAINKLNAYSSILRTKITLEFTKSTLQDQ 335


>gi|281414964|ref|ZP_06246706.1| chromosomal replication initiator protein DnaA [Micrococcus luteus
           NCTC 2665]
          Length = 420

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS--- 90
               +  ++ S+   A    ++           + + G SG GK+ L +     +R    
Sbjct: 82  RYHFETFVIGSSNRFAHAAANAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYP 141

Query: 91  ---TRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFHII 130
               R+ N  +  +  +   R                +L++DI  L   +    + FH  
Sbjct: 142 GLRVRYVNSEEFTNDFINSIRHDEGASFKQVYRNVDILLIDDIQFLADKEATVEEFFHTF 201

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N+++  +  +++T+   P         L SR +   +  I  PD +    ++ K      
Sbjct: 202 NTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEWGLITDIQPPDLETRIAILRKKAEAEG 261

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +   YI  R+  ++   E  + ++   A      +   LA  VLK+ 
Sbjct: 262 LVAPPEALEYIASRISTNIRELEGALIRVTAFASLNRQTVDIELAEHVLKDL 313


>gi|268610504|ref|ZP_06144231.1| chromosomal replication initiation protein [Ruminococcus
           flavefaciens FD-1]
          Length = 457

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 90/241 (37%), Gaps = 41/241 (17%)

Query: 38  ISRDDLLVHSAIEQAVRLID---------SWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
            + D  +   + E A+             + P      + + GPSG GK+ L    +++ 
Sbjct: 116 YTFDTFIEGRSNEFALACSKSVAKNCGEKAVPD--YNPLFIYGPSGMGKTHLITAIANEV 173

Query: 89  -----------------RSTRFSNIAKS--LDSILIDTRKP--VLLEDIDLLDFND---T 124
                                 + +  +  +D      R    +L++DI      +    
Sbjct: 174 RKNHPDFNIVYVTSEAFGGELINALNNTGNIDDFHAKYRNADILLIDDIQFFSGKERMQE 233

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH   ++HQ    +++T+   P         L +R +   +  IS PD +    +I +
Sbjct: 234 EFFHTFYTLHQEGRQIVITSDKPPKELLTLEERLRTRFEGGLIADISAPDYETRLAIINR 293

Query: 185 MFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                ++ +  ++A ++  R++   R L  A   +  +++ A   G  IT S+A  V+++
Sbjct: 294 KSELLELKMPSEVAEFMANRLKSNIRQLEGAVVRLKALNHFA---GSPITISMAQSVIRD 350

Query: 242 T 242
            
Sbjct: 351 V 351


>gi|260584257|ref|ZP_05852004.1| DNA replication initiator protein, ATPase [Granulicatella elegans
           ATCC 700633]
 gi|260157775|gb|EEW92844.1| DNA replication initiator protein, ATPase [Granulicatella elegans
           ATCC 700633]
          Length = 455

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + D  ++    + A      +   P      +   G  G GK+ L     ++    
Sbjct: 121 NPKYTFDSFIIGKGNQMAHAAALVVCERPGQLYNPLFFYGGVGLGKTHLMQAIGNQYKLL 180

Query: 89  --RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
              +      +++  + +I + +                +L++DI      +    + FH
Sbjct: 181 NPNARVKYVTSEAFTNEMITSLRTNTQQEFRDYYRNVDLLLVDDIQFFAEKEATQEEFFH 240

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++      +++T+   P         L SR  +   V I+ PD +    ++ K    
Sbjct: 241 TFNALFNNQKQIVLTSDRQPTEIKALQERLVSRFVSGLPVDITPPDLETRIAILSKKAEA 300

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I I     +YI  +++ ++   E  + ++   +++ G  IT +LAAE L+ 
Sbjct: 301 VGIDIPTDTLSYIAGQIQSNVRELEGALVRVQAYSVTHGEDITTNLAAEALQN 353


>gi|149375636|ref|ZP_01893405.1| chromosomal replication initiation protein [Marinobacter algicola
           DG893]
 gi|149360038|gb|EDM48493.1| chromosomal replication initiation protein [Marinobacter algicola
           DG893]
          Length = 445

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 81/236 (34%), Gaps = 30/236 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
             G + D  +   + + A      +   P      + L G  G GK+ L +         
Sbjct: 111 NEGFTFDTFVEGKSNQLARAASMQVAENPGGAYNPLFLYGGVGLGKTHLMHAIGNDIVRR 170

Query: 85  ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126
                          +D  ++ + + I +        +   +L++DI      +    + 
Sbjct: 171 NPRAKVAYLRSERFVADMVKALQLNAINEFKR--YYRSVDALLIDDIQFFARKERSQEEF 228

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++ +    +++T   FP         L SR      V +  P+ +    +++K  
Sbjct: 229 FHTFNALLEGGQQVIVTCDRFPKEIVDMEERLKSRFGWGLTVMVEPPELETRVAILMKKA 288

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + +  + A +I Q++  ++   E  +  +   A   G  IT     E LK+ 
Sbjct: 289 EQVNVKLSSEAAFFIAQKIRSNVRELEGALRLVIANAHFTGSEITPPFIRESLKDL 344


>gi|113473943|ref|YP_720004.1| chromosomal replication initiation protein [Trichodesmium
           erythraeum IMS101]
 gi|122965345|sp|Q11AE3|DNAA_TRIEI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|110164991|gb|ABG49531.1| chromosomal replication initiator protein DnaA [Trichodesmium
           erythraeum IMS101]
          Length = 456

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 28/242 (11%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLA 81
            + L  +       SR   +V      A     +    P      + L G  G GK+ L 
Sbjct: 112 PKPLPANLNAKYMFSR--FVVGPNNRMAHAASLAVAESPGQEFNPLFLCGGVGLGKTHLM 169

Query: 82  NIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDF 121
                        S+    S    + D I                    +L++DI  ++ 
Sbjct: 170 QAIGHYRLDIFPHSQIFYVSTEKFTNDLIAAIRKDSLQGFREHYRAADVLLVDDIQFIEG 229

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            +    + FH  N++H+    +++ +   P         LCSR     +  I  PD +  
Sbjct: 230 KEYTQEEFFHTFNTLHEAGKQVVLASDRPPNQIPSLQERLCSRFSMGLIADIQAPDLETR 289

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             +++K      + + + +  YI  R   ++   E  + ++       G+ +T    A +
Sbjct: 290 MAILLKKSEYENMVLPRDVIEYIATRYPSNIRELEGALTRVVTYISISGLPMTVENIAPI 349

Query: 239 LK 240
           L 
Sbjct: 350 LN 351


>gi|293380891|ref|ZP_06626927.1| chromosomal replication initiator protein DnaA [Lactobacillus
           crispatus 214-1]
 gi|290922564|gb|EFD99530.1| chromosomal replication initiator protein DnaA [Lactobacillus
           crispatus 214-1]
          Length = 455

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 88/259 (33%), Gaps = 29/259 (11%)

Query: 10  FFVPDKQKN---DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
              P  ++     QP   E++           + D+ +     + A     +    P   
Sbjct: 92  IVTPAPKREAQVQQPNLPEKEFTKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSF 151

Query: 67  ---VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTRK--------- 109
              + + G  G GK+ L         +++  +      +++  +  I++ K         
Sbjct: 152 YNPLFIFGGVGLGKTHLMQAVGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFRE 211

Query: 110 ------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                  +L++DI      +    + FH   +++     ++MT+   P         L S
Sbjct: 212 KYRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVS 271

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R      V+I+ PD +    ++ +        ID     YI  +++ ++   E  + K+ 
Sbjct: 272 RFTWGLQVEITPPDLETRIAILRRKAETEGWTIDDGTLNYIASQVDTNIRELEGALVKVQ 331

Query: 221 NLALSRGMGITRSLAAEVL 239
             A      I  +LA E L
Sbjct: 332 AYATIEKADIDVNLAREAL 350


>gi|186474774|ref|YP_001856244.1| chromosomal replication initiation protein [Burkholderia phymatum
           STM815]
 gi|226735789|sp|B2JJ97|DNAA_BURP8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|184191233|gb|ACC69198.1| chromosomal replication initiator protein DnaA [Burkholderia
           phymatum STM815]
          Length = 518

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 184 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 243

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 244 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 303

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 304 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 363

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +++ +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 364 EGVNLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 417


>gi|259047905|ref|ZP_05738306.1| DNA replication initiator protein, ATPase [Granulicatella adiacens
           ATCC 49175]
 gi|259035439|gb|EEW36694.1| DNA replication initiator protein, ATPase [Granulicatella adiacens
           ATCC 49175]
          Length = 456

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 79/234 (33%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSR-- 89
               + D  ++    + A          P      +   G  G GK+ L     +  +  
Sbjct: 122 NPKYTFDTFIIGKGNQMATAAARYVAENPGTAYNPLFFYGGVGLGKTHLMQAIGNDYKKN 181

Query: 90  ---STRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFH 128
              +      ++   + +I +                  +L++DI  L   +    + FH
Sbjct: 182 HPTARVKYVTSEEFMNEMIASIGSKTPQEFRNRYRNVDILLVDDIQFLAAKEATQEEFFH 241

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++      +++T+   P         L SR  +   V I+ PD +    ++      
Sbjct: 242 TFNALFNNQKQIVLTSDRQPTEIKALQERLVSRFVSGLPVDITPPDLETRIAILQNKAQS 301

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               I   + +Y+   ++ ++   E  + ++   ++  G  I+  LAAE LK  
Sbjct: 302 LGFNIPIDVLSYVAGHIQSNVRELEGALMRLQAYSVMVGEDISTDLAAEALKNL 355


>gi|225869488|ref|YP_002745435.1| chromosomal replication initiator protein [Streptococcus equi
           subsp. equi 4047]
 gi|254777914|sp|C0M7C0|DNAA_STRE4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|225698892|emb|CAW91873.1| chromosomal replication initiator protein [Streptococcus equi
           subsp. equi 4047]
          Length = 450

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 89/267 (33%), Gaps = 40/267 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV 66
           +Q++   +   EQ F   P          S D+ +       AV     + + P      
Sbjct: 87  EQQHQGQQGYTEQAFQQLPAVQSDLNPKYSFDNFIQGDENRWAVAASIAVANTPGTTYNP 146

Query: 67  VILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTR 108
           + + G  G GK+ L N   +                              ++D +    R
Sbjct: 147 LFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFR 206

Query: 109 KP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
               +L++DI  L          + F+  N++H  +  +++T+   P         L +R
Sbjct: 207 NLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTR 266

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K    V I+ PD +    ++     +      +    Y+  + + ++   E  +  +  
Sbjct: 267 FKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI-- 324

Query: 222 LALSRGMG----ITRSLAAEVLKETQQ 244
            +L         IT  +AAE ++  +Q
Sbjct: 325 -SLVANFKQIDTITVDIAAEAIRARKQ 350


>gi|195977157|ref|YP_002122401.1| chromosomal replication initiation protein [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|226735849|sp|B4U5G8|DNAA_STREM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|195973862|gb|ACG61388.1| chromosomal replication initiator protein DnaA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 450

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 89/267 (33%), Gaps = 40/267 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV 66
           +Q++   +   EQ F   P          S D+ +       AV     + + P      
Sbjct: 87  EQQHQGQQGYTEQAFQQLPAVQSDLNPKYSFDNFIQGDENRWAVAASIAVANTPGTTYNP 146

Query: 67  VILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTR 108
           + + G  G GK+ L N   +                              ++D +    R
Sbjct: 147 LFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFR 206

Query: 109 KP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
               +L++DI  L          + F+  N++H  +  +++T+   P         L +R
Sbjct: 207 NLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTR 266

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K    V I+ PD +    ++     +      +    Y+  + + ++   E  +  +  
Sbjct: 267 FKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI-- 324

Query: 222 LALSRGMG----ITRSLAAEVLKETQQ 244
            +L         IT  +AAE ++  +Q
Sbjct: 325 -SLVANFKQIDTITVDIAAEAIRARKQ 350


>gi|119509172|ref|ZP_01628323.1| chromosomal replication initiation protein [Nodularia spumigena
           CCY9414]
 gi|119466338|gb|EAW47224.1| chromosomal replication initiation protein [Nodularia spumigena
           CCY9414]
          Length = 459

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 94/273 (34%), Gaps = 36/273 (13%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61
           NL + + ++ +P +    +   + +Q           SR   +V +    A     +   
Sbjct: 89  NLGESEVTWELPSQSMTAESVPQNKQPPKDLNSKYVFSR--FVVGANNRMAHAASLAVAE 146

Query: 62  WPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLD 101
            P R    + L G  G GK+ L                     +++  +   + I     
Sbjct: 147 SPGREFNPLFLCGGVGLGKTHLMQAIGHYRSQICPDSKIFYVSTEQFTNDLITAIRNDSM 206

Query: 102 SILIDTRKP---VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
               +  +    +L++DI  ++  +    + FH  N++H+    +++ +   P       
Sbjct: 207 QNFREHYRAADVLLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPHHIPQLQ 266

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             LCSR     +  +  PD +    ++ K      I + + +  YI      ++   E  
Sbjct: 267 ERLCSRFSMGLIADVQTPDLETRMAILQKKAEYENIRLPRDVIEYIASNYTNNIRELEGA 326

Query: 216 VDKMDNLALSR----GMGITRSLAAEVLKETQQ 244
           + +    AL+     G+ +T      VL+   +
Sbjct: 327 LIR----ALAYISIWGLPMTVENITPVLERQSE 355


>gi|81251100|gb|ABB69896.1| DNA replication initiator protein [Nitrosomonas sp. IWT310]
          Length = 459

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWS------ 85
               + D  +   A + A      +   P      + + G  G GK+ L +         
Sbjct: 125 NPAFTFDAFVTGKANQLARAGAIQVAERPGIAYNPLFIYGGVGLGKTHLMHAVGNYVMEL 184

Query: 86  DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
           D     R+ +  K +  ++                +   +L++D+           + F+
Sbjct: 185 DAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQFFSGKNRTQEEFFY 244

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T+  +P         L SR      V I  P+ +    +++K    
Sbjct: 245 AFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPELEMRVAILLKKAFI 304

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +D+  A +I + +  ++   E  + ++   +   G  I+  LA E LK+ 
Sbjct: 305 EKIELDESTAFFIAKYIRSNVRELEGALKRVLAYSRFTGHPISLDLAKEALKDL 358


>gi|114330037|ref|YP_746259.1| chromosomal replication initiator protein DnaA [Nitrosomonas
           eutropha C91]
 gi|122314857|sp|Q0AK27|DNAA_NITEC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|81251096|gb|ABB69893.1| DNA replication initiator protein [Nitrosomonas sp. CNS332]
 gi|114307051|gb|ABI58294.1| chromosomal replication initiator protein DnaA [Nitrosomonas
           eutropha C91]
          Length = 459

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWS------ 85
               + D  +   A + A      +   P      + + G  G GK+ L +         
Sbjct: 125 NPAFTFDAFVTGKANQLARAGAIQVAERPGIAYNPLFIYGGVGLGKTHLMHAVGNYVMEL 184

Query: 86  DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
           D     R+ +  K +  ++                +   +L++D+           + F+
Sbjct: 185 DAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQFFSGKNRTQEEFFY 244

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T+  +P         L SR      V I  P+ +    +++K    
Sbjct: 245 AFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPELEMRVAILLKKAFI 304

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +D+  A +I + +  ++   E  + ++   +   G  I+  LA E LK+ 
Sbjct: 305 EKIELDESTAFFIAKYIRSNVRELEGALKRVLAYSRFTGHPISLDLAKEALKDL 358


>gi|94308946|ref|YP_582156.1| chromosomal replication initiation protein [Cupriavidus
           metallidurans CH34]
 gi|123384106|sp|Q1LSI9|DNAA_RALME RecName: Full=Chromosomal replication initiator protein DnaA
 gi|93352798|gb|ABF06887.1| chromosomal replication initiator protein DnaA [Cupriavidus
           metallidurans CH34]
          Length = 579

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
              ++ D+ +   A + A        + P +    + L G  G GK+ L +   +     
Sbjct: 245 NPILTFDNFVTGKANQLARAAAIQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 304

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128
             ++R           D +    RK              +L++DI           + F+
Sbjct: 305 NPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 364

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    +++K  A 
Sbjct: 365 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAAA 424

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + +++A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 425 ENVSVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGKDITIDVTREALKDL 478


>gi|134294129|ref|YP_001117864.1| chromosomal replication initiation protein [Burkholderia
           vietnamiensis G4]
 gi|166201869|sp|A4J9S6|DNAA_BURVG RecName: Full=Chromosomal replication initiator protein DnaA
 gi|134137286|gb|ABO53029.1| chromosomal replication initiator protein DnaA [Burkholderia
           vietnamiensis G4]
          Length = 525

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS-----D 86
              ++ D+ +   A + A      +   P      + L G  G GK+ L +        D
Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVAHNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424


>gi|134096621|ref|YP_001102282.1| chromosomal replication initiation protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005725|ref|ZP_06563698.1| chromosomal replication initiation protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909244|emb|CAL99356.1| chromosomal replication initiator protein DnaA [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 592

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 98/270 (36%), Gaps = 37/270 (13%)

Query: 9   SFFVPDKQKNDQPKNKEEQLFFSFP----------RCLGISRDDLLVHSAIE---QAVRL 55
           +   P   +   P+ ++ Q  F+ P               + D  ++ ++      A   
Sbjct: 217 NEIWPTFGRGQAPEAQQGQ-PFTAPKHAPPTSQTRLNAKYTFDTFVIGASNRFAHAAAVA 275

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK 109
               P+     + + G SG GK+ L +     ++        R+ +  +  +  +   R 
Sbjct: 276 AAEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSLRD 335

Query: 110 --------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
                          +L++DI  L+  +    + FH  N++H  +  +++++   P    
Sbjct: 336 DRQVAFQRRYRDVDVLLVDDIQFLEGKEGTQEEFFHTFNTLHNSNKQIVVSSDRPPKGLR 395

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L +R +   +  I  P+ +    ++ K  A  ++     +  +I  R+ER++   
Sbjct: 396 TLEDRLRTRFEWGLITDIQPPELETRIAILRKKAAQDRMNAPADVLEFIAARIERNIREL 455

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           E  + ++   A      +   LA  VL++ 
Sbjct: 456 EGALIRVTAFASLNRQPVDVQLAEIVLRDL 485


>gi|289705896|ref|ZP_06502275.1| chromosomal replication initiator protein DnaA [Micrococcus luteus
           SK58]
 gi|289557381|gb|EFD50693.1| chromosomal replication initiator protein DnaA [Micrococcus luteus
           SK58]
          Length = 515

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS--- 90
               +  ++ S+   A    ++           + + G SG GK+ L +     +R    
Sbjct: 177 RYHFETFVIGSSNRFAHAAANAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYP 236

Query: 91  ---TRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFHII 130
               R+ N  +  +  +   R                +L++DI  L   +    + FH  
Sbjct: 237 GLRVRYVNSEEFTNDFINSIRHDEGASFKQVYRNVDILLIDDIQFLADKEATVEEFFHTF 296

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N+++  +  +++T+   P         L SR +   +  I  PD +    ++ K      
Sbjct: 297 NTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEWGLITDIQPPDLETRIAILRKKAEAEG 356

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +   YI  R+  ++   E  + ++   A      +   LA  VLK+ 
Sbjct: 357 LVAPPEALEYIASRISTNIRELEGALIRVTAFASLNRQTVDIELAEHVLKDL 408


>gi|326563702|gb|EGE13953.1| DnaA family protein [Moraxella catarrhalis 46P47B1]
 gi|326564422|gb|EGE14650.1| DnaA family protein [Moraxella catarrhalis 12P80B1]
 gi|326577487|gb|EGE27367.1| DnaA family protein [Moraxella catarrhalis O35E]
          Length = 254

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 18/227 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +  Q   +       S +D    S+    +  ID       R + +VG SG GK+ LA+
Sbjct: 2   TQAIQDSLNLDIRPEASLEDF-QSSSYRPILDAIDKLVQGSLRELFIVGDSGFGKTHLAS 60

Query: 83  IWSDKSRS------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127
              +   S                    +   + ++    ++++D+ ++  +      LF
Sbjct: 61  AIYEHYTSMTSKMVISLNLTELIEQDPHATALVGLEMFDLIIVDDLQMVRHSYEWQEGLF 120

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD-DFLEKVIVKMF 186
           H+IN + ++   +L  A        + L DL +RL  A ++ +   DD +    +I  + 
Sbjct: 121 HLINRLREHQKQILYLADDPARELQIGLLDLHTRLSLAPMLTLPDNDDINDRRILIEVIL 180

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
             +   + +++  Y+++   R+      ++D +    L+R   +   
Sbjct: 181 KKKNWKLPEEIFDYLLEEGPRNAGDINTILDHI-RPLLTRLSRVQIP 226


>gi|254468744|ref|ZP_05082150.1| chromosomal replication initiator protein DnaA [beta
           proteobacterium KB13]
 gi|207087554|gb|EDZ64837.1| chromosomal replication initiator protein DnaA [beta
           proteobacterium KB13]
          Length = 450

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 90/231 (38%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------- 87
           ++ ++ +   A + A      +   P      + + G  G GK+ L     +K       
Sbjct: 119 LNFENFVTGRANQLATAAAKQVSERPGESYNPLFIYGGVGLGKTHLLQSIGNKVKEENKD 178

Query: 88  ------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFHIIN 131
                       +++ K+ +    D       +   +L++DI  +        + F+  N
Sbjct: 179 FKIKYLHAERYVTDVVKAYEGKTFDQFKKNYHSLDLLLIDDIQFIGKKNRTQEEFFYAFN 238

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++ +    +++T  ++P         L +R      V I  P+ +    +++K     +I
Sbjct: 239 TLIENKKQIIITCDSYPKEIQGVDERLRTRFSWGLTVAIEPPELEMRVAILLKKAEISKI 298

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            + + +A +I +++  ++   E  ++++  L+    + I  +LA E LK+ 
Sbjct: 299 TLPEDVAFFIAKQIRSNVRELEGALNRIVALSNFTNLPIDLNLAKEALKDL 349


>gi|262193327|ref|YP_003264536.1| chromosomal replication initiator protein DnaA [Haliangium
           ochraceum DSM 14365]
 gi|262076674|gb|ACY12643.1| chromosomal replication initiator protein DnaA [Haliangium
           ochraceum DSM 14365]
          Length = 498

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 31/237 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLID-----SWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
               + D  +   + + A+           P      V + G  G GK+ L +       
Sbjct: 162 NPRYTFDSFVAGPSNQLALAASQAAASSHPPK--YNPVFICGGVGLGKTHLLHSIGHSLH 219

Query: 90  STRFSNIAKSLDSILI---------------------DTRKPVLLEDIDLLDFND---TQ 125
             R       L                          +    +L++D+  L   D    +
Sbjct: 220 GLRPDARILYLSGERFMNEYILAIRSNRMHEFRRRYREGCDLLLIDDVQFLAGKDGTQDE 279

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++H     +++TA   P         L SR +   +  I  P+ +    ++ + 
Sbjct: 280 FFHTFNALHDSQRQIVLTADRKPHEISDIADRLRSRFQWGLLADIEPPELEMRMAILRQK 339

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                I +   +  YI   +  ++   E  + ++   A      IT + A E L+ +
Sbjct: 340 AEAEHIELPDDVVLYIATAIRANVRELEGALIRLSAYASLSRKPITLAFARETLEGS 396


>gi|221201814|ref|ZP_03574851.1| chromosomal replication initiator protein DnaA [Burkholderia
           multivorans CGD2M]
 gi|221207680|ref|ZP_03580688.1| chromosomal replication initiator protein DnaA [Burkholderia
           multivorans CGD2]
 gi|221172526|gb|EEE04965.1| chromosomal replication initiator protein DnaA [Burkholderia
           multivorans CGD2]
 gi|221178234|gb|EEE10644.1| chromosomal replication initiator protein DnaA [Burkholderia
           multivorans CGD2M]
          Length = 524

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 190 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 249

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 250 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 309

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 310 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 369

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 370 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 423


>gi|291612473|ref|YP_003522630.1| chromosomal replication initiator protein DnaA [Sideroxydans
           lithotrophicus ES-1]
 gi|291582585|gb|ADE10243.1| chromosomal replication initiator protein DnaA [Sideroxydans
           lithotrophicus ES-1]
          Length = 447

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
              +  D  +   A + A      +   P      + + G  G GK+ L           
Sbjct: 113 NSALVFDTFVTGKANQLAHAAAIQVAETPGVAYNPLFIYGGVGLGKTHLLQAIGNLVSKK 172

Query: 85  ------SDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLD---FNDTQLFH 128
                      +   S + ++  +   D       +   +L++DI  +        + F+
Sbjct: 173 NPQARICYIHATNYISGVVRAFQTKNFDEFKQFYNSLDLLLIDDIQFIADKPGTQQEFFY 232

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            +NS+   +  +++T  TFP       P L SR      V I  P  +    ++++  A 
Sbjct: 233 TLNSLIDTNKQVVITCDTFPKEITGIEPRLTSRFTCGLTVAIEPPGLEMRVAILLQKSAT 292

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
               I + +A +I + +  ++   E  +++++  A      I+  LA E LK+    
Sbjct: 293 NGSPISEDVAFFIAKHVRSNIRELEGALNRIEAYARFHKRIISIELAKEALKDLLAA 349


>gi|187922036|ref|YP_001893678.1| chromosomal replication initiation protein [Burkholderia
           phytofirmans PsJN]
 gi|226735790|sp|B2SZ75|DNAA_BURPP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|187713230|gb|ACD14454.1| chromosomal replication initiator protein DnaA [Burkholderia
           phytofirmans PsJN]
          Length = 545

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 211 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 270

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 271 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 330

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 331 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 390

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +++ +A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 391 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVTKEALKDL 444


>gi|302669375|ref|YP_003829335.1| chromosomal replication initiator protein DnaA1 [Butyrivibrio
           proteoclasticus B316]
 gi|302393848|gb|ADL32753.1| chromosomal replication initiator protein DnaA1 [Butyrivibrio
           proteoclasticus B316]
          Length = 466

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 85/241 (35%), Gaps = 29/241 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
                 D  +V S  + A      +   P      + L G  G GK+ L +     +   
Sbjct: 126 NPKYRFDTFVVGSNNKFAHSASLAVAESPGISYNPLFLYGGPGLGKTHLMHSIGHFVMEH 185

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND---TQ 125
             R+      ++   + +I++ +                   ++++D+  +   +    +
Sbjct: 186 NRRAKVLYVTSEQFTNEVIESIRSGKAESMSKLREKYRTVDVLMVDDVQFIIGKESTQEE 245

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N +HQ    +++++   P           SR +   +  I  PD +    ++ K 
Sbjct: 246 FFHTFNELHQAGKQIILSSDKPPKEMETLEERFRSRFEMGLIADIQSPDYETRMAILQKN 305

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             +    ID ++  YI   ++ ++   E   +K+   +    + IT   A E LK+    
Sbjct: 306 AENYGKHIDAEVINYIATNIKSNIRELEGAYNKIIAYSRLNNVDITLENAMEALKDIIYP 365

Query: 246 D 246
           D
Sbjct: 366 D 366


>gi|323344469|ref|ZP_08084694.1| replication initiation protein DnaA [Prevotella oralis ATCC 33269]
 gi|323094596|gb|EFZ37172.1| replication initiation protein DnaA [Prevotella oralis ATCC 33269]
          Length = 469

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 83/247 (33%), Gaps = 31/247 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCL---- 80
                     +  + +   +        + + +   +     + + GPSG GK+ L    
Sbjct: 126 PLDSQLNPHQTFANYIEGDSNKLPRSIGLSIAEHPNTAQFNPMFIYGPSGCGKTHLINAI 185

Query: 81  -----------------ANIWSDK-SRSTRFSNIAKSLDSILIDTRKPVLLEDID---LL 119
                            A ++  + S +T  +++   ++     T   ++++DI      
Sbjct: 186 GMKIREHYPRKRVLYVSARLFQVQFSNATLRNSVNDFIN--FYQTIDVLIVDDIQEWITA 243

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
                  FHI N + +    +++ +   PV        L +R     + ++  P+     
Sbjct: 244 VKTQNTFFHIFNHLFKNGKRIILASDRPPVDLEGMNDRLLTRFSCGLIAELEQPNVKLCI 303

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            ++        + I K++  +I      S+   + +V+ +   ++     I   LA  V+
Sbjct: 304 DILNNKIHRDGLDIPKEVVEFIASSANGSVRDLQGVVNSLLAYSVVYNSSIDMRLAERVI 363

Query: 240 KETQQCD 246
           K   + D
Sbjct: 364 KRAVKID 370


>gi|225677165|ref|ZP_03788163.1| chromosomal replication initiation protein [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590789|gb|EEH12018.1| chromosomal replication initiation protein [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 460

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 85/236 (36%), Gaps = 30/236 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A             ++      L G  G GK+ L +  +  
Sbjct: 123 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIAWH 182

Query: 86  ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123
                  K +    S          A     I++      +   ++++D+  +   D   
Sbjct: 183 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 242

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++ 
Sbjct: 243 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 302

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                  +++ K +  ++ + ++ ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 303 AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 357


>gi|5702042|emb|CAB52256.1| dnaA protein [Wolbachia sp. wRi]
          Length = 454

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 85/236 (36%), Gaps = 30/236 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A             ++      L G  G GK+ L +  +  
Sbjct: 123 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIAWH 182

Query: 86  ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123
                  K +    S          A     I++      +   ++++D+  +   D   
Sbjct: 183 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 242

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++ 
Sbjct: 243 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 302

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                  +++ K +  ++ + ++ ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 303 AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 357


>gi|42519921|ref|NP_965836.1| chromosomal replication initiation protein [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|225629873|ref|YP_002726664.1| chromosomal replication initiator protein DnaA [Wolbachia sp. wRi]
 gi|61212648|sp|Q73IZ0|DNAA_WOLPM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|42409658|gb|AAS13770.1| chromosomal replication initiator protein DnaA [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|67810247|gb|AAY81988.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|225591854|gb|ACN94873.1| chromosomal replication initiator protein DnaA [Wolbachia sp. wRi]
          Length = 460

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 85/236 (36%), Gaps = 30/236 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A             ++      L G  G GK+ L +  +  
Sbjct: 123 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIAWH 182

Query: 86  ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123
                  K +    S          A     I++      +   ++++D+  +   D   
Sbjct: 183 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 242

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++ 
Sbjct: 243 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 302

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                  +++ K +  ++ + ++ ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 303 AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 357


>gi|58698404|ref|ZP_00373316.1| chromosomal replication initiator protein DnaA [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58535086|gb|EAL59173.1| chromosomal replication initiator protein DnaA [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 464

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 85/236 (36%), Gaps = 30/236 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A             ++      L G  G GK+ L +  +  
Sbjct: 127 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIAWH 186

Query: 86  ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123
                  K +    S          A     I++      +   ++++D+  +   D   
Sbjct: 187 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 246

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++ 
Sbjct: 247 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 306

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                  +++ K +  ++ + ++ ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 307 AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 361


>gi|254463282|ref|ZP_05076698.1| chromosomal replication initiator protein DnaA [Rhodobacterales
           bacterium HTCC2083]
 gi|206679871|gb|EDZ44358.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 458

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 83/244 (34%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P     + D  +V    E A                 + L G  G GK+ L +  + + +
Sbjct: 117 PLDKRFTFDTFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELQ 176

Query: 90  STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126
           S+R       L +                     L      ++++D+  +   D    + 
Sbjct: 177 SSRPDLKVLYLSAEQFMYRFVQALRERKMMDFKSLFRAVDVLMVDDVQFIGGKDSTQEEF 236

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++    
Sbjct: 237 FHTFNALVDQNKQIIISADRAPGEIKGLEDRIKSRLQCGLVVDLHPTDYELRLGILQSKV 296

Query: 187 ADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +      + ID+ +  ++  R+  ++   E  + ++   A   G  IT  L  + L +
Sbjct: 297 EIQKAQYPGLHIDEGIIEFLAHRISTNVRVLEGALTRLFAFASLVGREITMDLTVDCLSD 356

Query: 242 TQQC 245
             + 
Sbjct: 357 VLRA 360


>gi|325567641|ref|ZP_08144308.1| DNA-directed DNA replication initiator protein [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159074|gb|EGC71220.1| DNA-directed DNA replication initiator protein [Enterococcus
           casseliflavus ATCC 12755]
          Length = 445

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + D  ++    + A      +   P      +   G  G GK+ L +    +    
Sbjct: 110 NEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLLK 169

Query: 88  --------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLL---DFNDTQLFH 128
                         +     S     ++    + R    +L++DI  L   +    + F+
Sbjct: 170 RPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVNKEGTQEEFFN 229

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
               +++ +  +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 230 TFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETRTAILRKKAEA 289

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A  +   IT SLAAE +K  
Sbjct: 290 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTSLAAEAIKAL 343


>gi|257875893|ref|ZP_05655546.1| chromosomal replication initiator protein [Enterococcus
           casseliflavus EC20]
 gi|257810059|gb|EEV38879.1| chromosomal replication initiator protein [Enterococcus
           casseliflavus EC20]
          Length = 445

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + D  ++    + A      +   P      +   G  G GK+ L +    +    
Sbjct: 110 NEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLLK 169

Query: 88  --------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLL---DFNDTQLFH 128
                         +     S     ++    + R    +L++DI  L   +    + F+
Sbjct: 170 RPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVNKEGTQEEFFN 229

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
               +++ +  +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 230 TFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETRTAILRKKAEA 289

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A  +   IT SLAAE +K  
Sbjct: 290 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTSLAAEAIKAL 343


>gi|257871389|ref|ZP_05651042.1| chromosomal replication initiator protein [Enterococcus gallinarum
           EG2]
 gi|257805553|gb|EEV34375.1| chromosomal replication initiator protein [Enterococcus gallinarum
           EG2]
          Length = 445

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + D  ++    + A      +   P      +   G  G GK+ L +    +    
Sbjct: 110 NEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLLK 169

Query: 88  --------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLL---DFNDTQLFH 128
                         +     S     ++    + R    +L++DI  L   +    + F+
Sbjct: 170 RPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVNKEGTQEEFFN 229

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
               +++ +  +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 230 TFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETRTAILRKKAEA 289

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A  +   IT SLAAE +K  
Sbjct: 290 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTSLAAEAIKAL 343


>gi|257866276|ref|ZP_05645929.1| chromosomal replication initiator protein [Enterococcus
           casseliflavus EC30]
 gi|257873208|ref|ZP_05652861.1| chromosomal replication initiator protein [Enterococcus
           casseliflavus EC10]
 gi|257800234|gb|EEV29262.1| chromosomal replication initiator protein [Enterococcus
           casseliflavus EC30]
 gi|257807372|gb|EEV36194.1| chromosomal replication initiator protein [Enterococcus
           casseliflavus EC10]
          Length = 445

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + D  ++    + A      +   P      +   G  G GK+ L +    +    
Sbjct: 110 NEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLLK 169

Query: 88  --------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLL---DFNDTQLFH 128
                         +     S     ++    + R    +L++DI  L   +    + F+
Sbjct: 170 RPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVNKEGTQEEFFN 229

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
               +++ +  +++T+   P         L SR      V I+ PD +    ++ K    
Sbjct: 230 TFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETRTAILRKKAEA 289

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ I     +YI  +++ ++   E  + ++   A  +   IT SLAAE +K  
Sbjct: 290 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTSLAAEAIKAL 343


>gi|303235975|ref|ZP_07322578.1| chromosomal replication initiator protein DnaA [Prevotella disiens
           FB035-09AN]
 gi|302483848|gb|EFL46840.1| chromosomal replication initiator protein DnaA [Prevotella disiens
           FB035-09AN]
          Length = 468

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 82/255 (32%), Gaps = 35/255 (13%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGS 75
            P+  + QL          S  + +   +        + + +   +     + + GPSG 
Sbjct: 122 APQEIDSQLDL------HKSFSNYIEGDSNKLPRSIGLSIAEHPNTTQFNPMFIYGPSGC 175

Query: 76  GKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           GK+ L                     A ++  +  ++  +N           T   ++++
Sbjct: 176 GKTHLINAIGLKIKQLYPQKRVLYISARLFQVQYTNSVLNNTTNDFIG-FYQTIDVLIVD 234

Query: 115 DID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DI             FHI N +      +++     PV        L +R     + ++ 
Sbjct: 235 DIQEWITSIKTQDTFFHIFNHLFMNGKRIVLACDRPPVELKGMNDRLLTRFSCGLIAELE 294

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            P+      ++        + I  ++  +I Q    S+   + +++ +   ++     + 
Sbjct: 295 KPNIQLCIDILNSKIKRDGLNIPDEVVQFIAQTANGSVRDLQGIINSLLAYSVVYNSNVD 354

Query: 232 RSLAAEVLKETQQCD 246
             LA  V+K   + D
Sbjct: 355 MRLAERVIKRAVKID 369


>gi|224418815|ref|ZP_03656821.1| chromosomal replication initiation protein [Helicobacter canadensis
           MIT 98-5491]
 gi|253826661|ref|ZP_04869546.1| Chromosomal replication initiator protein dnaA [Helicobacter
           canadensis MIT 98-5491]
 gi|313142334|ref|ZP_07804527.1| chromosomal replication initiator protein dnaA [Helicobacter
           canadensis MIT 98-5491]
 gi|253510067|gb|EES88726.1| Chromosomal replication initiator protein dnaA [Helicobacter
           canadensis MIT 98-5491]
 gi|313131365|gb|EFR48982.1| chromosomal replication initiator protein dnaA [Helicobacter
           canadensis MIT 98-5491]
          Length = 430

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 87/234 (37%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
              ++ +  +V ++   A  +  +     S     +++ G +G GK+ L N   + + + 
Sbjct: 98  NPSLTFNSFIVGNSNSFAFNVAKAVAQNQSTIYNPLVIYGNTGLGKTHLLNAIGNTNANV 157

Query: 92  RFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFN---DTQLFHII 130
             S I  + +  L D                      +L++DI  L        + FH  
Sbjct: 158 GKSVIYTTSEQFLNDYLLHIRNNTMDRFREKYRACDYLLIDDIQFLSGKNQIQEEFFHTF 217

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N + + +  +++T+   P         L +R  +  +  I  P+ +    +I        
Sbjct: 218 NELKKNNKQIVLTSDRPPKDMNGLEERLKTRFTSGLLADIQPPELETKINIINAKCELDG 277

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL--SRGMGITRSLAAEVLKET 242
           I +  K+  +I   +  ++   E ++ K++  ++  +    IT     ++LKE 
Sbjct: 278 IHLSPKIIDFIAANINDNIREIEGVLVKLN-FSINVTNIQEITIDFVRDILKEY 330


>gi|209515897|ref|ZP_03264759.1| chromosomal replication initiator protein DnaA [Burkholderia sp.
           H160]
 gi|209503745|gb|EEA03739.1| chromosomal replication initiator protein DnaA [Burkholderia sp.
           H160]
          Length = 387

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 53  NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 112

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K  +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 113 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 172

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 173 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 232

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +++ +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 233 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 286


>gi|296157625|ref|ZP_06840460.1| chromosomal replication initiator protein DnaA [Burkholderia sp.
           Ch1-1]
 gi|295892397|gb|EFG72180.1| chromosomal replication initiator protein DnaA [Burkholderia sp.
           Ch1-1]
          Length = 537

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 203 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 262

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K+ +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 263 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 322

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 323 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 382

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +++ +A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 383 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVTKEALKDL 436


>gi|68171134|ref|ZP_00544543.1| chromosomal replication initiator protein, DnaA [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658026|ref|YP_507606.1| chromosomal replication initiation protein [Ehrlichia chaffeensis
           str. Arkansas]
 gi|123722775|sp|Q2GG27|DNAA_EHRCR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|67999459|gb|EAM86099.1| chromosomal replication initiator protein, DnaA [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599483|gb|ABD44952.1| chromosomal replication initiator protein DnaA [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 464

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 87/242 (35%), Gaps = 28/242 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A             +     + L G  G GK+ L +  +  
Sbjct: 127 PLDPRFTFDNFVVGKPNELAFAAARRVAESNEPISGSNPLFLYGGVGLGKTHLMHAIAWY 186

Query: 86  --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124
                          +    ++    +S D +L   +      ++++D+  +   D    
Sbjct: 187 IIKSSSKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 246

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++  
Sbjct: 247 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQL 306

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 I I  K+  ++ + ++ ++   E  ++K+   +   G  IT   A+++L +  +
Sbjct: 307 KVEKMGINIPNKVLEFLAKNIKSNIRELEGALNKVVAHSSLVGCSITLDSASDILSDLLR 366

Query: 245 CD 246
            +
Sbjct: 367 AN 368


>gi|295394846|ref|ZP_06805059.1| ATPase involved in DNA replication initiation [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972179|gb|EFG48041.1| ATPase involved in DNA replication initiation [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 476

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 33/260 (12%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69
           P +     P    E            + D  ++ ++   A     +    P++    + +
Sbjct: 112 PAQPTVVAPTESPEVGSSDL--NPKYTFDSFVIGASNRFAHAAAFAVAESPAKAYNPLFI 169

Query: 70  VGPSGSGKSCLANI-------------------------WSDKSRSTRFSNIAKSLDSIL 104
            G SG GK+ L +                          + +   S   SN  +      
Sbjct: 170 YGDSGLGKTHLLHAVGHYALQLYPKIRVRYVSSEEFVNDFINTVGSQVTSNTLRPAFQRR 229

Query: 105 IDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                 ++++DI  L   D    + FH  N++H  +  +++T+   P         L SR
Sbjct: 230 YREVDILMIDDIQFLQGKDATVEEFFHTFNALHAENKQVIITSDQPPKMLKGFEERLRSR 289

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            ++  +  +  PD +    ++    A+  + +  ++  +I  R+  ++   E  + ++  
Sbjct: 290 FESGLLTDVQPPDLETRFAILRNKAANENLAVPDEVLEFIASRVSSNIRELEGALIRVTA 349

Query: 222 LALSRGMGITRSLAAEVLKE 241
            +      I   LA  VLK+
Sbjct: 350 FSNLNEQVIDVGLAQTVLKD 369


>gi|260891931|ref|YP_003238028.1| chromosomal replication initiator protein DnaA [Ammonifex degensii
           KC4]
 gi|260864072|gb|ACX51178.1| chromosomal replication initiator protein DnaA [Ammonifex degensii
           KC4]
          Length = 444

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 97/269 (36%), Gaps = 32/269 (11%)

Query: 3   LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW 62
           ++ E+   ++  + KN+       QL          + ++ +V ++   A     +    
Sbjct: 81  ILAEEEPLYINLEAKNNSAVITPPQL------NPKYTFENFVVGNSNRFAHAAALAVAEA 134

Query: 63  PSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDS 102
           P+R    + + G  G GK+ L +                   ++K  +     +  +   
Sbjct: 135 PARAYNPLFIYGGVGLGKTHLMHAIGHHILSRRPDLKVAYVTTEKFTNEMIDALQMNRTQ 194

Query: 103 ILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
              +  + V   L++DI  L   +    + FH  N++++    +++++   P        
Sbjct: 195 QFREKYRNVDVLLIDDIQFLAGKERTQEEFFHTFNTLYEAARQIVISSDRPPKEIPTLEE 254

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR +   +  I  PD +    ++ K      + +  +   +I  R++ ++   E   
Sbjct: 255 RLRSRFEWGLITDIQPPDFETRVAILRKKAQLENVTVPDETLLFIADRIQSNIRELEGAF 314

Query: 217 DKMDNLALSRGMGITRSLAAEVLKETQQC 245
            ++   A      IT   AA VLK+    
Sbjct: 315 IRVVAFAALTNSPITPETAATVLKDIFHA 343


>gi|217031880|ref|ZP_03437383.1| hypothetical protein HPB128_199g88 [Helicobacter pylori B128]
 gi|298735501|ref|YP_003728022.1| chromosomal replication initiator protein DnaA [Helicobacter pylori
           B8]
 gi|216946532|gb|EEC25134.1| hypothetical protein HPB128_199g88 [Helicobacter pylori B128]
 gi|298354686|emb|CBI65558.1| chromosomal replication initiator protein DnaA [Helicobacter pylori
           B8]
          Length = 457

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 110 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 169

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 170 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 229

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 230 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 289

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           QI + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 290 QITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 344


>gi|120552945|ref|YP_957296.1| chromosomal replication initiation protein [Marinobacter aquaeolei
           VT8]
 gi|166214680|sp|A1TWJ0|DNAA_MARAV RecName: Full=Chromosomal replication initiator protein DnaA
 gi|120322794|gb|ABM17109.1| chromosomal replication initiator protein DnaA [Marinobacter
           aquaeolei VT8]
          Length = 487

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 30/236 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  +   + + A      +   P      + L G  G GK+ L +         
Sbjct: 153 NETFTFDTFVEGKSNQLARAASMQVAENPGGAYNPLFLYGGVGLGKTHLMHAIGNEIVRR 212

Query: 85  ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126
                          +D  ++ + + I +        +   +L++DI      +    + 
Sbjct: 213 NPRAKVAYLRSERFVADMVKALQLNAINEFKR--YYRSVDALLIDDIQFFARKERSQEEF 270

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++ +    +++T   FP         L SR      V +  P+ +    +++K  
Sbjct: 271 FHTFNALLEGGQQVIVTCDRFPKEISDMEERLKSRFGWGLTVMVEPPELETRVAILMKKA 330

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + +  + A +I Q++  ++   E  +  +   A   G  IT     E LK+ 
Sbjct: 331 EQANVKLSSEAAFFIAQKIRSNVRELEGALRLVIANAHFTGSEITPPFIRESLKDL 386


>gi|154250459|ref|YP_001411283.1| chromosomal replication initiator protein DnaA [Parvibaculum
           lavamentivorans DS-1]
 gi|154154409|gb|ABS61626.1| chromosomal replication initiator protein DnaA [Parvibaculum
           lavamentivorans DS-1]
          Length = 519

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 83/245 (33%), Gaps = 31/245 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSR 89
           P     + D  +V  + E A                 + L G  G GK+ L +  + + R
Sbjct: 173 PLDPRFTFDAFVVGKSNELAHAAARRVAEATDVTFNPLFLYGGVGLGKTHLMHAIAWEIR 232

Query: 90  STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126
             +       L +                        +   ++++D+  +   D    + 
Sbjct: 233 KRQPERKVLYLSAEKFMYQFVRALRFKDTMAFKQQFRSVDVLMIDDVQFISGKDSTQEEF 292

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++  ++  ++++A   P         + SRL       I   D +    ++    
Sbjct: 293 FHTFNALIDHNRQVIISADRSPSDLEGIEERIRSRLGWGLAADIHPTDYELRLGILQAKA 352

Query: 187 AD---RQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +   R   + I   +  ++  R+  ++   E  + ++   A   G  IT  ++ EVL++
Sbjct: 353 DEMMQRNGPVSIPPGVLEFLAHRIVSNVRELEGALKRVVAYASLVGRPITLDMSQEVLRD 412

Query: 242 TQQCD 246
             + +
Sbjct: 413 LLRSN 417


>gi|209558588|ref|YP_002285060.1| chromosomal replication initiation protein [Streptococcus pyogenes
           NZ131]
 gi|226735856|sp|B5XIP2|DNAA_STRPZ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|209539789|gb|ACI60365.1| Chromosomal replication initiator protein dnaA [Streptococcus
           pyogenes NZ131]
          Length = 451

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 41/268 (15%)

Query: 15  KQKNDQPKNKEEQLFFS-FPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65
           +Q   +   K +Q   +  P          S ++ +       AV     + + P     
Sbjct: 87  EQNQTKINQKPKQQALNSLPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYN 146

Query: 66  VVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDT 107
            + + G  G GK+ L N   +                              ++D +    
Sbjct: 147 PLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKF 206

Query: 108 RKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           R    +L++DI  L          + F+  N++H  +  +++T+   P         L +
Sbjct: 207 RNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVT 266

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R K    V I+ PD +    ++     +      +    Y+  + + ++   E  +  + 
Sbjct: 267 RFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI- 325

Query: 221 NLALSRGMG----ITRSLAAEVLKETQQ 244
             +L         IT  +AAE ++  +Q
Sbjct: 326 --SLGANFKQIDTITVDIAAEAIRARKQ 351


>gi|15674251|ref|NP_268424.1| chromosomal replication initiation protein [Streptococcus pyogenes
           M1 GAS]
 gi|19745202|ref|NP_606338.1| chromosomal replication initiation protein [Streptococcus pyogenes
           MGAS8232]
 gi|21909537|ref|NP_663805.1| chromosomal replication initiation protein [Streptococcus pyogenes
           MGAS315]
 gi|28894913|ref|NP_801263.1| chromosomal replication initiation protein [Streptococcus pyogenes
           SSI-1]
 gi|50913347|ref|YP_059319.1| chromosomal replication initiation protein [Streptococcus pyogenes
           MGAS10394]
 gi|56808865|ref|ZP_00366576.1| COG0593: ATPase involved in DNA replication initiation
           [Streptococcus pyogenes M49 591]
 gi|71902668|ref|YP_279471.1| chromosomal replication initiation protein [Streptococcus pyogenes
           MGAS6180]
 gi|71909815|ref|YP_281365.1| chromosomal replication initiation protein [Streptococcus pyogenes
           MGAS5005]
 gi|94987632|ref|YP_595733.1| chromosomal replication initiation protein [Streptococcus pyogenes
           MGAS9429]
 gi|94989510|ref|YP_597610.1| chromosomal replication initiation protein [Streptococcus pyogenes
           MGAS10270]
 gi|94991498|ref|YP_599597.1| chromosomal replication initiation protein [Streptococcus pyogenes
           MGAS2096]
 gi|139472889|ref|YP_001127604.1| chromosomal replication initiation protein [Streptococcus pyogenes
           str. Manfredo]
 gi|61212508|sp|Q5XEM7|DNAA_STRP6 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61222629|sp|P0A3A4|DNAA_STRP1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61222631|sp|P0A3A5|DNAA_STRP3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61222632|sp|P0A3A6|DNAA_STRP8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|122987157|sp|Q1JP60|DNAA_STRPC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123382367|sp|Q1JEA5|DNAA_STRPB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123382466|sp|Q1JJA7|DNAA_STRPD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123761459|sp|Q48VX2|DNAA_STRPM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166215363|sp|A2RBX3|DNAA_STRPG RecName: Full=Chromosomal replication initiator protein DnaA
 gi|8037923|gb|AAF71535.1|AF255728_1 chromosomal initiator protein DnaA [Streptococcus pyogenes]
 gi|13621326|gb|AAK33146.1| Chromosomal initiator protein [Streptococcus pyogenes M1 GAS]
 gi|19747291|gb|AAL96837.1| chromosomal replication initiator protein [Streptococcus pyogenes
           MGAS8232]
 gi|21903717|gb|AAM78608.1| chromosomal initiator protein [Streptococcus pyogenes MGAS315]
 gi|28810158|dbj|BAC63096.1| chromosomal initiator protein [Streptococcus pyogenes SSI-1]
 gi|50902421|gb|AAT86136.1| chromosomal replication initiator protein [Streptococcus pyogenes
           MGAS10394]
 gi|71801763|gb|AAX71116.1| chromosomal replication initiator protein [Streptococcus pyogenes
           MGAS6180]
 gi|71852597|gb|AAZ50620.1| chromosomal replication initiator protein [Streptococcus pyogenes
           MGAS5005]
 gi|94541140|gb|ABF31189.1| chromosomal replication initiator protein [Streptococcus pyogenes
           MGAS9429]
 gi|94543018|gb|ABF33066.1| Chromosomal replication initiator protein dnaA [Streptococcus
           pyogenes MGAS10270]
 gi|94545006|gb|ABF35053.1| Chromosomal replication initiator protein dnaA [Streptococcus
           pyogenes MGAS2096]
 gi|134271135|emb|CAM29345.1| chromosomal replication initiator protein [Streptococcus pyogenes
           str. Manfredo]
          Length = 451

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 41/268 (15%)

Query: 15  KQKNDQPKNKEEQLFFS-FPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65
           +Q   +   K +Q   +  P          S ++ +       AV     + + P     
Sbjct: 87  EQNQTKINQKPKQQALNSLPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYN 146

Query: 66  VVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDT 107
            + + G  G GK+ L N   +                              ++D +    
Sbjct: 147 PLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKF 206

Query: 108 RKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           R    +L++DI  L          + F+  N++H  +  +++T+   P         L +
Sbjct: 207 RNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVT 266

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R K    V I+ PD +    ++     +      +    Y+  + + ++   E  +  + 
Sbjct: 267 RFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI- 325

Query: 221 NLALSRGMG----ITRSLAAEVLKETQQ 244
             +L         IT  +AAE ++  +Q
Sbjct: 326 --SLVANFKQIDTITVDIAAEAIRARKQ 351


>gi|73666899|ref|YP_302915.1| chromosomal replication initiation protein [Ehrlichia canis str.
           Jake]
 gi|72394040|gb|AAZ68317.1| chromosomal replication initiator protein DnaA [Ehrlichia canis
           str. Jake]
          Length = 452

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 87/242 (35%), Gaps = 28/242 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A             +     + L G  G GK+ L +  +  
Sbjct: 115 PLDPRFTFDNFVVGKPNELAFAAARRVAESNDPISGSNPLFLYGGVGLGKTHLMHAIAWY 174

Query: 86  --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124
                          +    ++    +S D +L   +      ++++D+  +   D    
Sbjct: 175 IIKSSSKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 234

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++  
Sbjct: 235 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQL 294

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 I I  K+  ++ + ++ ++   E  ++K+   +   G  IT   A+++L +  +
Sbjct: 295 KVEKMGINIPNKVLEFLAKNIKSNIRELEGALNKVVAHSSLVGCSITLDSASDILSDLLR 354

Query: 245 CD 246
            +
Sbjct: 355 AN 356


>gi|167752111|ref|ZP_02424238.1| hypothetical protein ALIPUT_00353 [Alistipes putredinis DSM 17216]
 gi|167660352|gb|EDS04482.1| hypothetical protein ALIPUT_00353 [Alistipes putredinis DSM 17216]
          Length = 469

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 39/259 (15%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL-----IDSWPSWPS 64
           F +P  +K          +          +    +       A        +D     P 
Sbjct: 119 FVIPGLKK----------IVIDPQLNPNYTFATFIEGECNRLARSAGMAVAVD-PGHTPF 167

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKP------------ 110
             + + G SG GK+ +      + R        +  S++      +              
Sbjct: 168 NPLYIYGNSGLGKTHIVQSIGHEVRQRHPELQVLYVSMNKFQAQFQTAYKNGEIPDFIHF 227

Query: 111 ------VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                 ++++DI  L          F+I N +      L++T+   PV        L +R
Sbjct: 228 YQMIDVLIIDDIQELTGKTGTQNAFFNIFNHLQLAGKQLILTSDKPPVELKDIEQRLLTR 287

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K     +++ PD D   K+I        + +  ++  Y+   +  ++   E  +  +  
Sbjct: 288 FKWGLSTQLNTPDYDTKVKIIRIKAQKLGLQLTDEIVRYLADNISANVREIEGALSALVA 347

Query: 222 LALSRGMGITRSLAAEVLK 240
             +  G  ++ SL  E+LK
Sbjct: 348 NTVYMGKKVSLSLVKEILK 366


>gi|269954811|ref|YP_003324600.1| chromosomal replication initiator protein DnaA [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303492|gb|ACZ29042.1| chromosomal replication initiator protein DnaA [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 468

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 99/269 (36%), Gaps = 33/269 (12%)

Query: 5   KEDYSFFVPDKQKN-DQPKNKEEQL--FFSFPRC--LGISRDDLLVHSAIE---QAVRLI 56
            +DY    P+++ + D P     Q     + P         +  ++ ++      A   +
Sbjct: 96  TQDY--VEPEEEDDVDAPAPPLPQPVRPAAEPTRLNPRYVFETFVIGASNRFAHAAAVAV 153

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK- 109
              P+     + + G SG GK+ L +     + +       R+ N  +  +  +      
Sbjct: 154 AEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAHNLYPHVRVRYVNSEEFTNDFINSIGDK 213

Query: 110 -------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         +L++DI  L   +    + FH  N++H  +  +++T+   P     
Sbjct: 214 KQGAFQRRYRDVDVLLIDDIQFLQGKEQTMEEFFHTFNALHNANKQVVITSDVPPKQLNG 273

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR +   +  +  PD +    ++ K  A  ++ + + + +YI  R+  ++   E
Sbjct: 274 FEDRLRSRFEWGLITDVQPPDLETRIAILRKKAASDKLDVPQDVLSYIGSRISTNIRELE 333

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + ++   A      +   LA  VL++ 
Sbjct: 334 GALIRVTAFANLNRQQVDLPLAEIVLRDL 362


>gi|242310227|ref|ZP_04809382.1| chromosomal replication initiator protein dnaA [Helicobacter
           pullorum MIT 98-5489]
 gi|239523524|gb|EEQ63390.1| chromosomal replication initiator protein dnaA [Helicobacter
           pullorum MIT 98-5489]
          Length = 430

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 101/259 (38%), Gaps = 29/259 (11%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRV 66
            F P+K+K+++   K+ Q   +      ++ +  +V ++   A  +  +     S     
Sbjct: 75  VFNPNKKKDNKHNTKKIQNATNL--NPSLTFNSFIVGNSNSFAFNVAKAVAQNQSTIYNP 132

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID------------------TR 108
           +++ G +G GK+ L N   + + +   S I  + +  L D                    
Sbjct: 133 LMIYGNTGLGKTHLLNAIGNANVNVGKSVIYTTSEQFLNDYLLHIRNNTMDRFREKYRAC 192

Query: 109 KPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI  L        + FH  N + + +  +++T+   P +       L +R  + 
Sbjct: 193 DYLLIDDIQFLSGKNQIQEEFFHTFNELKKNNKQIVLTSDRPPKNMDGLEERLKTRFTSG 252

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL- 224
            +  I  P+ +    +I        I +  ++  +I   +  ++   E ++ K++  ++ 
Sbjct: 253 LLADIQPPELETKINIINAKCELDGIHLTPQVIDFIAANINDNIREIEGVLVKLN-FSIN 311

Query: 225 -SRGMGITRSLAAEVLKET 242
            +    +T     ++LKE 
Sbjct: 312 VTNVQEVTIDFVRDILKEY 330


>gi|119503573|ref|ZP_01625656.1| chromosomal replication initiation protein [marine gamma
           proteobacterium HTCC2080]
 gi|119460635|gb|EAW41727.1| chromosomal replication initiation protein [marine gamma
           proteobacterium HTCC2080]
          Length = 477

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 83/254 (32%), Gaps = 32/254 (12%)

Query: 19  DQPKNKEEQLFFSFPRC--LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPS 73
             P+    Q   S       G +    +   + + A+         P      + L G  
Sbjct: 125 APPRAPAVQTVPSHQHNLVEGYTFRSFVEGKSNQLALAAAQQVADNPGDSYNPLFLYGGV 184

Query: 74  GSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSILIDTRKPV 111
           G GK+ L +                        +D  ++ + + I          +   +
Sbjct: 185 GLGKTHLMHAVGNSLRRKKPDARIVYLHSERFVADMVKALQLNAINDFKR--YYRSVDAL 242

Query: 112 LLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI      D +  + FH  N++ +    +++T   +P         L SR      V
Sbjct: 243 LIDDIQFFANKDRSQEEFFHTFNALLEGGQQMILTCDRYPKEINGLEERLKSRFGWGLTV 302

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            +  P+ +    +++K      + +    A +I QR+  ++   E  + ++   A   G 
Sbjct: 303 AVEPPELETRVAILMKKAEQSGVTLPHDAAFFIAQRIRSNVRELEGALKRVIASANFTGR 362

Query: 229 GITRSLAAEVLKET 242
                L  E LK+ 
Sbjct: 363 PFDIDLIKESLKDL 376


>gi|161523181|ref|YP_001578193.1| chromosomal replication initiation protein [Burkholderia
           multivorans ATCC 17616]
 gi|189348958|ref|YP_001944586.1| chromosomal replication initiation protein [Burkholderia
           multivorans ATCC 17616]
 gi|221214574|ref|ZP_03587544.1| chromosomal replication initiator protein DnaA [Burkholderia
           multivorans CGD1]
 gi|226735788|sp|A9AI97|DNAA_BURM1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|160340610|gb|ABX13696.1| chromosomal replication initiator protein DnaA [Burkholderia
           multivorans ATCC 17616]
 gi|189332980|dbj|BAG42050.1| chromosomal replication initiator protein [Burkholderia multivorans
           ATCC 17616]
 gi|221165464|gb|EED97940.1| chromosomal replication initiator protein DnaA [Burkholderia
           multivorans CGD1]
          Length = 524

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 190 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 249

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 250 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 309

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 310 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 369

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 370 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 423


>gi|326561047|gb|EGE11412.1| DnaA family protein [Moraxella catarrhalis 7169]
 gi|326566731|gb|EGE16870.1| DnaA family protein [Moraxella catarrhalis 103P14B1]
 gi|326569353|gb|EGE19413.1| DnaA family protein [Moraxella catarrhalis BC8]
 gi|326571448|gb|EGE21463.1| DnaA family protein [Moraxella catarrhalis BC7]
 gi|326575269|gb|EGE25197.1| DnaA family protein [Moraxella catarrhalis CO72]
 gi|326576644|gb|EGE26551.1| DnaA family protein [Moraxella catarrhalis 101P30B1]
          Length = 254

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 18/227 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +  Q   +       S +D    S+    +  ID       R + +VG SG GK+ LA+
Sbjct: 2   TQAIQDSLNLDIRPEASLEDF-QSSSYRPILDAIDKLVQGSLRELFIVGDSGFGKTHLAS 60

Query: 83  IWSDKSRS------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127
              +   S                    +   + ++    ++++D+ ++  +      LF
Sbjct: 61  AIYEHYTSMTSKMVISLNLTELIEQDPHATALVGLEMFDLIIVDDLQMVRHSYEWQEGLF 120

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD-DFLEKVIVKMF 186
           H+IN + ++   +L  A        + L DL +RL  A ++ +   DD +    +I  + 
Sbjct: 121 HLINRLREHQKQILYLADDPARELQIGLLDLHTRLSLAPMLTLPDNDDINDRRILIEVIL 180

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
             +   + +++  Y+++   R+      ++D +    L+R   +   
Sbjct: 181 KKKNWKLPEEIFDYLLEEGPRNAGDINTVLDHI-RPLLTRLSRVQIP 226


>gi|295675102|ref|YP_003603626.1| chromosomal replication initiator protein DnaA [Burkholderia sp.
           CCGE1002]
 gi|295434945|gb|ADG14115.1| chromosomal replication initiator protein DnaA [Burkholderia sp.
           CCGE1002]
          Length = 532

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86
              ++ D+ +   A + A          P      + L G  G GK+ L +        D
Sbjct: 198 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 257

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128
           K  +      A+   S ++   +    +D       +DLL  +D            + F+
Sbjct: 258 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 317

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 318 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 377

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +++ +A ++ + +  ++   E  + K+   +   G  IT  L  E LK+ 
Sbjct: 378 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 431


>gi|29840234|ref|NP_829340.1| chromosomal replication initiation protein [Chlamydophila caviae
           GPIC]
 gi|33301061|sp|Q823E6|DNAA2_CHLCV RecName: Full=Chromosomal replication initiator protein DnaA 2
 gi|29834582|gb|AAP05218.1| chromosomal replication initiator protein DnaA [Chlamydophila
           caviae GPIC]
          Length = 460

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 77/238 (32%), Gaps = 34/238 (14%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
               ++  + LV    +   R++       +    +P   + L GP GSGK+ L     +
Sbjct: 104 VNPEMTFGNFLVTPENDLPFRILQEFTKPAEDTAGFPFNPIYLFGPEGSGKTHLMQAAVN 163

Query: 87  ---KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDF---NDTQ 125
              +         +      L+   +                + +EDI++         +
Sbjct: 164 ALREFGGKILYVASDLFTEHLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSGKGATQEE 223

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+      +++++   P         L SR +    V I     + L   ++  
Sbjct: 224 FFHTFNSLQTEGKLIVISSAYAPADLKAMEERLISRFEWGVAVPIHPLTKEGLRSFLMHQ 283

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                + I+     +++  +  ++         +D L L       + LA ++L E  
Sbjct: 284 AEQLSVRIEDTALDFLIHALSSNVKTL------IDALKLLSKRVAYKKLAQQLLYEDD 335


>gi|296112801|ref|YP_003626739.1| DnaA family protein [Moraxella catarrhalis RH4]
 gi|295920495|gb|ADG60846.1| DnaA family protein [Moraxella catarrhalis RH4]
          Length = 254

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 86/227 (37%), Gaps = 18/227 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +  Q   +       S +D    S+    +  ID       R + +VG SG GK+ LA+
Sbjct: 2   TQAIQDSLNLDIRPEASLEDF-QSSSYRPILDAIDKLVQGSLRELFIVGDSGFGKTHLAS 60

Query: 83  IWSDKSRS------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127
              +   S                    +   + ++    ++++D+ ++  +      LF
Sbjct: 61  AIYEHYTSMTSKMVISLNLTELIEQDPHATALVGLEMFDLIIVDDLQMVRHSYEWQEGLF 120

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD-DFLEKVIVKMF 186
           H+IN + ++   +L  A        + L DL +RL  A ++ +   DD +    +I  + 
Sbjct: 121 HLINRLREHQKQILYLADDPARELQIGLLDLHTRLSLAPMLTLPDNDDINDRRILIEVIL 180

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
             +   + +++  Y++    R+      ++D +    L+R   +   
Sbjct: 181 KKKNWKLPEEIFDYLLDEGPRNAGDINTILDHI-RPLLTRLSRVQIP 226


>gi|255017120|ref|ZP_05289246.1| chromosomal replication initiation protein [Listeria monocytogenes
           FSL F2-515]
          Length = 295

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 48  AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDS 102
           ++  A       P+     + + G  G GK+ L +         K  +      ++   +
Sbjct: 1   SLAVAEA-----PAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQHKDNAKVMYLSSEKFTN 55

Query: 103 ILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTA 144
             I + +                +L++DI  L   +    + FH  N+++     +++++
Sbjct: 56  EFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNTLYDEQKQIIISS 115

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P         L SR +   +  I+ PD +    ++ K      + I  ++  YI  +
Sbjct: 116 DRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKADGLDIPNEVMLYIANQ 175

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++ ++   E  + ++   +      IT  LAAE LK+
Sbjct: 176 IDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 212


>gi|160893411|ref|ZP_02074196.1| hypothetical protein CLOL250_00960 [Clostridium sp. L2-50]
 gi|156864806|gb|EDO58237.1| hypothetical protein CLOL250_00960 [Clostridium sp. L2-50]
          Length = 454

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 28/235 (11%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSD----- 86
              + +  +V  + + A     +    P       + L G +G GK+ L    +      
Sbjct: 116 PKYTFETFVVGESNKLAHATCLAVADSPGLDKFNPLFLYGGAGLGKTHLMQSIAHYILQH 175

Query: 87  ------------KSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                       K  +     I K+      +  + V   L++DI  L   +    + F 
Sbjct: 176 NKNMKVLYVPSNKFTNEIVEAIKKNKTDEFREKYRTVDVLLIDDIQYLIGKESTQQEFFD 235

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     +++++   P           SR +    + I  PD +    ++      
Sbjct: 236 TFNALHDEGKQIILSSDKPPKEIKTLEERFRSRFEWGVPIDIHAPDYETRMAILKNKVEM 295

Query: 189 RQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                I   +  YI   +  ++   E  ++K+   A    + IT  LA  +LK+ 
Sbjct: 296 NGYKNISDNILEYIANNVTYNVRELEGALNKISVYAELGNVTITEDLAKNILKDM 350


>gi|222475026|ref|YP_002563441.1| chromosomal replication initiator protein (dnaA) [Anaplasma
           marginale str. Florida]
 gi|254994872|ref|ZP_05277062.1| chromosomal replication initiation protein [Anaplasma marginale
           str. Mississippi]
 gi|255003006|ref|ZP_05277970.1| chromosomal replication initiation protein [Anaplasma marginale
           str. Puerto Rico]
 gi|255004132|ref|ZP_05278933.1| chromosomal replication initiation protein [Anaplasma marginale
           str. Virginia]
 gi|222419162|gb|ACM49185.1| chromosomal replication initiator protein (dnaA) [Anaplasma
           marginale str. Florida]
          Length = 471

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 87/242 (35%), Gaps = 28/242 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A           + +     + L G  G GK+ L +  +  
Sbjct: 134 PLDPRFTFDNFVVGKPNELAFAAARRVAESSAPIPGSNPLFLYGGVGLGKTHLMHAIAWY 193

Query: 86  --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124
                          +    ++    +S D +L   +      ++++D+  +   D    
Sbjct: 194 ILNSSVKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 253

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++  
Sbjct: 254 EFFHTFNALIDQNKQLVISADRSPSDLDGVEDRIKSRLGWGLVADINETTFELRLGILQL 313

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 + +  ++  ++ + ++ ++   E  ++K+   +   G  +T   A+ +L +  +
Sbjct: 314 KIEKMGVHVPNEVLEFLAKNIKSNIRELEGALNKVVAHSSLVGSSVTIESASGILSDLLR 373

Query: 245 CD 246
            +
Sbjct: 374 AN 375


>gi|329902527|ref|ZP_08273137.1| Chromosomal replication initiator protein DnaA [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548755|gb|EGF33394.1| Chromosomal replication initiator protein DnaA [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 464

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 83/235 (35%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS 90
               ++ D  +   A + A          P      + L G  G GK+ L +   ++  +
Sbjct: 129 VNTALTFDSFVTGKANQLARAAAIQVADNPGVSYNPLFLYGGVGLGKTHLVHAIGNQVMA 188

Query: 91  ------TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLF 127
                  R+ +  + +  ++                +   +L++DI           + F
Sbjct: 189 DNPSAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDVLLIDDIQFFGGKSRTQEEFF 248

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +   ++      +++T+ T+P         L SR  +   V +  P+ +    +++K  A
Sbjct: 249 YAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGLTVAVEPPELEMRVAILLKKAA 308

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              +     +A ++ + +  ++   E  + K+   +   G  IT  +  + LK+ 
Sbjct: 309 QEGVNFSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHGKDITIEVVKDALKDL 363


>gi|300362678|ref|ZP_07058854.1| DNA-directed DNA replication initiator protein [Lactobacillus
           gasseri JV-V03]
 gi|300353669|gb|EFJ69541.1| DNA-directed DNA replication initiator protein [Lactobacillus
           gasseri JV-V03]
          Length = 464

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 81/265 (30%), Gaps = 35/265 (13%)

Query: 13  PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           P++    +P+ K  Q                    + D  +     + A     +    P
Sbjct: 98  PERLVTPKPRIKTNQEILEDRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 157

Query: 64  SRV---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR------------ 108
                 + + G  G GK+ L      +  + +       + S                  
Sbjct: 158 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKLHAKVVYIQSETFVNDFINSIKNKTQAE 217

Query: 109 --------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     +L++DI      +    + FH   +++     ++MT+   P         
Sbjct: 218 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 277

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      V+I+ PD +    ++ K      + ID     YI  +++ ++   E  + 
Sbjct: 278 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGALV 337

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
           K+   A      I   LA E L + 
Sbjct: 338 KVQAHATIEREDINVDLAKEALADL 362


>gi|239916572|ref|YP_002956130.1| chromosomal replication initiator protein DnaA [Micrococcus luteus
           NCTC 2665]
 gi|118706|sp|P21173|DNAA_MICLU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|259645255|sp|C5C7X4|DNAA_MICLC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|149848|gb|AAA25315.1| DNA biosynthesis initiation protein (dnaA) [Micrococcus luteus]
 gi|239837779|gb|ACS29576.1| chromosomal replication initiator protein DnaA [Micrococcus luteus
           NCTC 2665]
          Length = 515

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS--- 90
               +  ++ S+   A    ++           + + G SG GK+ L +     +R    
Sbjct: 177 RYHFETFVIGSSNRFAHAAANAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYP 236

Query: 91  ---TRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFHII 130
               R+ N  +  +  +   R                +L++DI  L   +    + FH  
Sbjct: 237 GLRVRYVNSEEFTNDFINSIRHDEGASFKQVYRNVDILLIDDIQFLADKEATVEEFFHTF 296

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N+++  +  +++T+   P         L SR +   +  I  PD +    ++ K      
Sbjct: 297 NTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEWGLITDIQPPDLETRIAILRKKAEAEG 356

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    +   YI  R+  ++   E  + ++   A      +   LA  VLK+ 
Sbjct: 357 LVAPPEALEYIASRISTNIRELEGALIRVTAFASLNRQTVDIELAEHVLKDL 408


>gi|332709094|ref|ZP_08429063.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula
           3L]
 gi|332352145|gb|EGJ31716.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula
           3L]
          Length = 460

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 85/253 (33%), Gaps = 40/253 (15%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGIS----RDDLLVHSAIEQAVRLIDSWPSW 62
           D+S+  P    + +   K +      PR   ++        +V      A     +   +
Sbjct: 94  DFSWSFPVATNHSENTFKNQ------PRRAKLNPKHVFSRFVVGPNNRMAHAASLAVGEY 147

Query: 63  PSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDS 102
           P R    + L G  G GK+ L                     +++  +   S I +    
Sbjct: 148 PGREFNPLFLCGGVGLGKTHLMQAIGHYRLDNNPDSKIFYVSTEQFTNDLISAIREDSIQ 207

Query: 103 ILID---TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
              +   T + +L++DI  ++  +    + FH  N++H+    +++ +   P        
Sbjct: 208 SFREHYRTAEVLLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQINSLEE 267

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FA 212
            LCSR     +  I  PD +    ++ K   D  I +   +  YI        R L    
Sbjct: 268 RLCSRFSMGLIADIQPPDLETRMAILQKKAEDENIRLPHDVVEYIAASYTSNIRELEGAL 327

Query: 213 EKLVDKMDNLALS 225
            + V  +    L+
Sbjct: 328 TRAVTYISIAGLA 340


>gi|307149946|ref|YP_003885330.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC
           7822]
 gi|306980174|gb|ADN12055.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC
           7822]
          Length = 454

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 70/210 (33%), Gaps = 26/210 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------ 85
               +    +V      A     +    P R    + L G  G GK+ L    +      
Sbjct: 114 NPKYTFSRFVVGPNNRLAHAATLAVAESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLEM 173

Query: 86  -----------DKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFH 128
                      ++  +   + I +       +   T   +L++DI  ++  +    + FH
Sbjct: 174 YPDSKVFYVSTEQFTNDLIAAIRQDSLQSFREHYRTADILLVDDIQFIEGKEYTQEEFFH 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++ +   P         L SR     +  I +PD +    ++ K    
Sbjct: 234 TFNTLHEAGKQVVIASDRPPKQIPTLQDRLISRFSMGLIADIQVPDLETRMAILQKKAEY 293

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
             + + +++  YI      ++   E  + +
Sbjct: 294 ENMRLPREVIEYIATHYTSNIRELEGALIR 323


>gi|226942152|ref|YP_002797226.1| DnaA [Laribacter hongkongensis HLHK9]
 gi|254777904|sp|C1D6I2|DNAA_LARHH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226717079|gb|ACO76217.1| DnaA [Laribacter hongkongensis HLHK9]
          Length = 481

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 79/234 (33%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82
               + + L+           A+++ D+          + G  G GK+ L          
Sbjct: 146 NPAFTFESLVTGKGNQLARAAALQIADNPGDSTYNPFFVYGGVGLGKTHLIQAIGNHVYQ 205

Query: 83  ---------IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLF 127
                    I +++  +                   +   +L++DI      +    + F
Sbjct: 206 KNPQAKIRYIHAERYVADIMRAYQHKAFDEFKRYYHSLDLLLIDDIQFFAGKNRTMEEFF 265

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++ +    ++MT  ++P         L SR      V+I  P+ +    +++K   
Sbjct: 266 YAFNALLEGGKQVIMTCDSYPKQIEGMDERLISRFSWGLTVEIQPPELEMRVAILMKKAE 325

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              + +   +A +I Q +  ++   E  + ++   +      I+  L  E LK+
Sbjct: 326 ADNLKLGNDVAFFIAQNVRSNVRELEGALKRVVAYSRFSNQPISLDLVKEALKD 379


>gi|56798246|dbj|BAD82889.1| DnaA [Burkholderia multivorans]
          Length = 524

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+ +   A + A          P      + L G  G GK+ L +   ++    
Sbjct: 190 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 249

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 250 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 309

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 310 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 369

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A ++ + +  ++   E  + K+   +   G  I+  L  E LK+ 
Sbjct: 370 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 423


>gi|189499001|ref|YP_001958471.1| chromosomal replication initiation protein [Chlorobium
           phaeobacteroides BS1]
 gi|189494442|gb|ACE02990.1| chromosomal replication initiator protein DnaA [Chlorobium
           phaeobacteroides BS1]
          Length = 491

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 80/235 (34%), Gaps = 29/235 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90
               + D L+       A     S    P       +++ G  G GK+ +     +  R 
Sbjct: 153 NPKYTFDTLIRGDCNSLAFAASKSVSQNPGQNAFNPLVIYGGVGLGKTHMMQAVGNHVRE 212

Query: 91  TRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127
           +  S   +  S +   ID    +                  +++DI      +    ++F
Sbjct: 213 SHRSEYVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRKMDVLIIDDIQFFAGKEKTQEEIF 272

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           HI N++HQ +  +++++             L SR        I  PD +  + +I     
Sbjct: 273 HIFNTLHQSNKQIILSSDRPIKEIRGIEERLISRFNWGLSADIQPPDYETRKAIIQSKLE 332

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241
              + +D+ +  +I   + +++   E  +V  + + +L     I        LK+
Sbjct: 333 QSGVTLDESVVEFIATNVTQNVREIEGCIVKLLASHSLFNQ-EIDLQFTKMTLKD 386


>gi|310817279|ref|YP_003949637.1| chromosomal replication initiator protein DnaA [Stigmatella
           aurantiaca DW4/3-1]
 gi|309390351|gb|ADO67810.1| Chromosomal replication initiator protein DnaA [Stigmatella
           aurantiaca DW4/3-1]
          Length = 450

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 91/236 (38%), Gaps = 31/236 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86
               +    +V  + +       +    P      + + G +G GK+ L +     IW +
Sbjct: 116 SPRFTFGTFVVADSNQLPAAAAAAVADKPGHHYNPLYIYGGTGLGKTHLLHAVGNLIW-E 174

Query: 87  KSRSTRFSNIAKS-----------------LDSILIDTRKPVLLEDIDLLDFNDT---QL 126
           ++ + R   ++                         D    +L++DI  L   +    + 
Sbjct: 175 RNPAQRVVYLSSEQFTNEYVESVREHRMTEFRRKFRDECDVLLIDDIQFLGKREETQKEF 234

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N++++ + ++++T+ T P         L SR     +  I  P  +    ++ K  
Sbjct: 235 FYTFNTLYEQNKAIVLTSDTVPSEIPGLEDRLRSRFAMGLLTDIREPSYETRVAILQKKA 294

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGITRSLAAEVLKE 241
               + +   +A +I + +++++   E  + K+    +LSR   +T   AA+VLK+
Sbjct: 295 EAEGLGLPDDVAHFIAKHIQKNVRELEGALVKLSAIHSLSRL-PVTVEFAAQVLKD 349


>gi|74316019|ref|YP_313759.1| chromosomal replication initiator protein DnaA [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055514|gb|AAZ95954.1| chromosomal replication initiator protein, DnaA [Thiobacillus
           denitrificans ATCC 25259]
          Length = 457

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSR-- 89
             G + D+ +   A + A          P      + + G  G GK+ L     +  R  
Sbjct: 123 NPGFTFDNFVSGRANQLARAAALQIAENPGVAYNPLFVYGGVGLGKTHLLQAIGNTVRQT 182

Query: 90  --STRFS--NIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFH 128
             + R S  +    +D ++                +   +L++DI  L   D    + F+
Sbjct: 183 NPAARISYIHANDYVDDVVKAYLNKQFDDLKRRYMSLDLLLIDDIQFLAKKDRTQEEFFY 242

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + NS+ +    +++T  TFP         L SR      V +  P+ +    +++     
Sbjct: 243 VFNSLIENKKQIVITCDTFPKEISGLDDRLKSRFAWGLTVAVEPPELEMRVAILLAKARA 302

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +D+ +A +I +++  ++   E  + ++   +      IT  L  E L++ 
Sbjct: 303 ESVTLDENVAFFIAKQVRSNVRELEGALKRVIAFSRFHEKPITMELVKEALRDL 356


>gi|300213940|gb|ADJ78356.1| Chromosomal replication initiator protein dnaA [Lactobacillus
           salivarius CECT 5713]
          Length = 446

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 82/245 (33%), Gaps = 32/245 (13%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCL 80
           KE QL          + D  +V    + A     +    P      +   G  G GK+ L
Sbjct: 114 KETQL------NDRYTFDTFVVGKGNQLAHAAALAVAEEPGVFYNPLFFYGGVGLGKTHL 167

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLD 120
            +    +    R     K + S                        +   +L++DI    
Sbjct: 168 MHAIGHQMLENRPDAKVKYVTSESFANDFISSIQTKRQEEFRREYRSVDLLLVDDIQFFA 227

Query: 121 ---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
                  + FH  N+++     +++++   P         L SR K    V I+ PD + 
Sbjct: 228 DKVGTQEEFFHTFNALYDDKKQIVLSSDRLPNEIPKLQQRLVSRFKWGLSVDITPPDFET 287

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
              ++        + I     +YI  +++ ++   E  + +++  +      I+ SLAAE
Sbjct: 288 RIAILRNKAEAEHVSIPDDTLSYIAGQIDSNIRELEGALMRVEAFSSMTRTPISTSLAAE 347

Query: 238 VLKET 242
            LK  
Sbjct: 348 ALKNL 352


>gi|307256022|ref|ZP_07537810.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865444|gb|EFM97339.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 451

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85
           F       ++ ++ +   + + A  +       P         L G +G GK+ L +   
Sbjct: 111 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 170

Query: 86  D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122
           +       ++R     +     D +       +             +++DI        +
Sbjct: 171 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 230

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  NS+ + +  +++ +  FP +       + SRL       I  P+ +    ++
Sbjct: 231 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 290

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240
           +K   +R + + +++A +I Q++  ++   E  ++++  +A        IT     E LK
Sbjct: 291 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 348

Query: 241 ET 242
           + 
Sbjct: 349 DL 350


>gi|307253756|ref|ZP_07535610.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258213|ref|ZP_07539956.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260451|ref|ZP_07542146.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306863240|gb|EFM95180.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867673|gb|EFM99518.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869854|gb|EFN01636.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 451

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85
           F       ++ ++ +   + + A  +       P         L G +G GK+ L +   
Sbjct: 111 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 170

Query: 86  D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122
           +       ++R     +     D +       +             +++DI        +
Sbjct: 171 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 230

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  NS+ + +  +++ +  FP +       + SRL       I  P+ +    ++
Sbjct: 231 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 290

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240
           +K   +R + + +++A +I Q++  ++   E  ++++  +A        IT     E LK
Sbjct: 291 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 348

Query: 241 ET 242
           + 
Sbjct: 349 DL 350


>gi|307249123|ref|ZP_07531130.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306854411|gb|EFM86607.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 451

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85
           F       ++ ++ +   + + A  +       P         L G +G GK+ L +   
Sbjct: 111 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 170

Query: 86  D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122
           +       ++R     +     D +       +             +++DI        +
Sbjct: 171 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 230

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  NS+ + +  +++ +  FP +       + SRL       I  P+ +    ++
Sbjct: 231 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 290

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240
           +K   +R + + +++A +I Q++  ++   E  ++++  +A        IT     E LK
Sbjct: 291 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 348

Query: 241 ET 242
           + 
Sbjct: 349 DL 350


>gi|307244802|ref|ZP_07526901.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307251522|ref|ZP_07533429.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854247|gb|EFM86453.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306860986|gb|EFM92992.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 451

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85
           F       ++ ++ +   + + A  +       P         L G +G GK+ L +   
Sbjct: 111 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 170

Query: 86  D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122
           +       ++R     +     D +       +             +++DI        +
Sbjct: 171 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 230

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  NS+ + +  +++ +  FP +       + SRL       I  P+ +    ++
Sbjct: 231 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 290

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240
           +K   +R + + +++A +I Q++  ++   E  ++++  +A        IT     E LK
Sbjct: 291 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 348

Query: 241 ET 242
           + 
Sbjct: 349 DL 350


>gi|303250480|ref|ZP_07336677.1| chromosomal replication initiator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650468|gb|EFL80627.1| chromosomal replication initiator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 447

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85
           F       ++ ++ +   + + A  +       P         L G +G GK+ L +   
Sbjct: 107 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 166

Query: 86  D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122
           +       ++R     +     D +       +             +++DI        +
Sbjct: 167 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 226

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  NS+ + +  +++ +  FP +       + SRL       I  P+ +    ++
Sbjct: 227 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 286

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240
           +K   +R + + +++A +I Q++  ++   E  ++++  +A        IT     E LK
Sbjct: 287 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 344

Query: 241 ET 242
           + 
Sbjct: 345 DL 346


>gi|303251822|ref|ZP_07337993.1| chromosomal replication initiator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649252|gb|EFL79437.1| chromosomal replication initiator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 447

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85
           F       ++ ++ +   + + A  +       P         L G +G GK+ L +   
Sbjct: 107 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 166

Query: 86  D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122
           +       ++R     +     D +       +             +++DI        +
Sbjct: 167 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 226

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  NS+ + +  +++ +  FP +       + SRL       I  P+ +    ++
Sbjct: 227 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 286

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240
           +K   +R + + +++A +I Q++  ++   E  ++++  +A        IT     E LK
Sbjct: 287 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 344

Query: 241 ET 242
           + 
Sbjct: 345 DL 346


>gi|190149270|ref|YP_001967795.1| chromosomal replication initiator protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189914401|gb|ACE60653.1| chromosomal replication initiator protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 494

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85
           F       ++ ++ +   + + A  +       P         L G +G GK+ L +   
Sbjct: 154 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 213

Query: 86  D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122
           +       ++R     +     D +       +             +++DI        +
Sbjct: 214 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 273

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  NS+ + +  +++ +  FP +       + SRL       I  P+ +    ++
Sbjct: 274 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 333

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240
           +K   +R + + +++A +I Q++  ++   E  ++++  +A        IT     E LK
Sbjct: 334 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 391

Query: 241 ET 242
           + 
Sbjct: 392 DL 393


>gi|126207489|ref|YP_001052714.1| chromosomal replication initiation protein [Actinobacillus
           pleuropneumoniae L20]
 gi|126096281|gb|ABN73109.1| chromosomal replication initiator protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 494

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85
           F       ++ ++ +   + + A  +       P         L G +G GK+ L +   
Sbjct: 154 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 213

Query: 86  D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122
           +       ++R     +     D +       +             +++DI        +
Sbjct: 214 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 273

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  NS+ + +  +++ +  FP +       + SRL       I  P+ +    ++
Sbjct: 274 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 333

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240
           +K   +R + + +++A +I Q++  ++   E  ++++  +A        IT     E LK
Sbjct: 334 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 391

Query: 241 ET 242
           + 
Sbjct: 392 DL 393


>gi|53729134|ref|ZP_00134100.2| COG0593: ATPase involved in DNA replication initiation
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307249200|ref|ZP_07531197.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307262581|ref|ZP_07544212.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306858724|gb|EFM90783.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306872079|gb|EFN03792.1| Chromosomal replication initiator protein dnaA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 451

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85
           F       ++ ++ +   + + A  +       P         L G +G GK+ L +   
Sbjct: 111 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 170

Query: 86  D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122
           +       ++R     +     D +       +             +++DI        +
Sbjct: 171 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 230

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  NS+ + +  +++ +  FP +       + SRL       I  P+ +    ++
Sbjct: 231 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 290

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240
           +K   +R + + +++A +I Q++  ++   E  ++++  +A        IT     E LK
Sbjct: 291 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 348

Query: 241 ET 242
           + 
Sbjct: 349 DL 350


>gi|291547605|emb|CBL20713.1| chromosomal replication initiator protein DnaA [Ruminococcus sp.
           SR1/5]
          Length = 455

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 87/241 (36%), Gaps = 29/241 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V S  + A     +    P      + + G +G GK+ L +     I   
Sbjct: 115 NPKYTFDTFVVGSNNKFAQAAALAVAESPGDTYNPLFIYGGAGLGKTHLMHSIAHFILEH 174

Query: 87  KSRSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQ 125
              S      ++   + LI+T +                   +L++DI  +   +    +
Sbjct: 175 DENSRVLYVTSEEFTNELIETIRNGNNTAMSKFREKYRNIDVLLVDDIQFIIGKESTQEE 234

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+H     +++++   P    +      SR +   +  I+LPD +    ++ K 
Sbjct: 235 FFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDYETRMAILHKN 294

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                  I + +  YI   ++ ++   E   +K+   A      +T  LA + LK+    
Sbjct: 295 EEMNGYNISEDVIKYIATNIKSNIRELEGAFNKVMAGAKLEKKEVTLELAEQALKDIISP 354

Query: 246 D 246
           D
Sbjct: 355 D 355


>gi|220905644|ref|YP_002480955.1| chromosomal replication initiation protein [Cyanothece sp. PCC
           7425]
 gi|254777899|sp|B8HRT5|DNAA_CYAP4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|219862255|gb|ACL42594.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC
           7425]
          Length = 460

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 86/264 (32%), Gaps = 37/264 (14%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLFF-SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65
           D  F  P   +N  P    ++            SR   +V      A     +    P R
Sbjct: 94  DLGFAFPPLFRNPSPAPAPQRERMSDLNPKYVFSR--YVVGPNNRMAHAACLAVAESPGR 151

Query: 66  V---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILI 105
               + L G  G GK+ L                     +++  +   + I K       
Sbjct: 152 EFNPLFLCGGVGLGKTHLMQAIGHYRLEICPDSKIFYVSTEQFTNDLIAAIRKDSMQSFR 211

Query: 106 DTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
           +  + V   L++DI  ++  +    + FH  N++H+    +++ +   P         LC
Sbjct: 212 EHYRAVDVMLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPSQIPRLQERLC 271

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKL 215
           SR     +  I  PD +    ++ K      I + +++  YI        R L     + 
Sbjct: 272 SRFSMGLIADIQPPDLETRMAILQKKAEYENIRLPREVIEYIASSYTSNIRELEGALIRA 331

Query: 216 VDKMDNLALSRGMGITRSLAAEVL 239
           V  +       G+ +T    A VL
Sbjct: 332 VAYIS----ISGLPMTVENIAPVL 351


>gi|81251088|gb|ABB69887.1| DNA replication initiator protein [Nitrosovibrio sp. FJI82]
 gi|81251092|gb|ABB69890.1| DNA replication initiator protein [Nitrosovibrio sp. RY3C]
          Length = 460

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85
               + D  +   A + A      +   P      + + G  G GK+ L           
Sbjct: 126 NPAFTFDSFVTGKANQLARAGAIQVAERPGVAYNPLFIYGGVGLGKTHLIQAIGNLVLEQ 185

Query: 86  DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
           +     R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 186 NSQAKVRYIHAEQYVSDVVRAYQHKAFDDFKQYYHSLDLLLIDDIQFFGGKSRTQEEFFY 245

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T  ++P         L SR      V +  P+ +    +++K    
Sbjct: 246 AFNALIEAHKQVIITCDSYPKEISGMEERLVSRFGWGLTVAVEPPELEMRVAILLKKAQL 305

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +I +D+ +A +I + +  ++   E  + ++   +      ++  LA E LK+ 
Sbjct: 306 EKIELDESVAFFIAKHIRSNVRELEGALKRVLAYSRFTNHPLSLDLAKEALKDL 359


>gi|90960991|ref|YP_534907.1| chromosomal replication initiation protein [Lactobacillus
           salivarius UCC118]
 gi|227891669|ref|ZP_04009474.1| DNA-directed DNA replication initiator protein [Lactobacillus
           salivarius ATCC 11741]
 gi|301300472|ref|ZP_07206671.1| chromosomal replication initiator protein DnaA [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90820185|gb|ABD98824.1| Chromosomal replication initiation protein [Lactobacillus
           salivarius UCC118]
 gi|227866472|gb|EEJ73893.1| DNA-directed DNA replication initiator protein [Lactobacillus
           salivarius ATCC 11741]
 gi|300851919|gb|EFK79604.1| chromosomal replication initiator protein DnaA [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 454

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 82/245 (33%), Gaps = 32/245 (13%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCL 80
           KE QL          + D  +V    + A     +    P      +   G  G GK+ L
Sbjct: 114 KETQL------NDRYTFDTFVVGKGNQLAHAAALAVAEEPGVFYNPLFFYGGVGLGKTHL 167

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLD 120
            +    +    R     K + S                        +   +L++DI    
Sbjct: 168 MHAIGHQMLENRPDAKVKYVTSESFANDFISSIQTKRQEEFRREYRSVDLLLVDDIQFFA 227

Query: 121 ---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
                  + FH  N+++     +++++   P         L SR K    V I+ PD + 
Sbjct: 228 DKVGTQEEFFHTFNALYDDKKQIVLSSDRLPNEIPKLQQRLVSRFKWGLSVDITPPDFET 287

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
              ++        + I     +YI  +++ ++   E  + +++  +      I+ SLAAE
Sbjct: 288 RIAILRNKAEAEHVSIPDDTLSYIAGQIDSNIRELEGALMRVEAFSSMTRTPISTSLAAE 347

Query: 238 VLKET 242
            LK  
Sbjct: 348 ALKNL 352


>gi|58697378|ref|ZP_00372705.1| chromosomal replication initiator protein DnaA [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536223|gb|EAL59777.1| chromosomal replication initiator protein DnaA [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 345

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 85/236 (36%), Gaps = 30/236 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A             ++      L G  G GK+ L +  +  
Sbjct: 8   PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIAWH 67

Query: 86  ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123
                  K +    S          A     I++      +   ++++D+  +   D   
Sbjct: 68  IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 127

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++ 
Sbjct: 128 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 187

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                  +++ K +  ++ + ++ ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 188 AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 242


>gi|283782562|ref|YP_003373316.1| chromosomal replication initiator protein DnaA [Gardnerella
           vaginalis 409-05]
 gi|298253031|ref|ZP_06976823.1| chromosomal replication initiator protein DnaA [Gardnerella
           vaginalis 5-1]
 gi|283442037|gb|ADB14503.1| chromosomal replication initiator protein DnaA [Gardnerella
           vaginalis 409-05]
 gi|297532426|gb|EFH71312.1| chromosomal replication initiator protein DnaA [Gardnerella
           vaginalis 5-1]
          Length = 539

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIWS------DKSRS 90
            D  +   +   A  +  +      R    + + G SG GK+ L N         D S  
Sbjct: 199 FDTFVPGDSNRFARTVALAVAEGSGRDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLK 258

Query: 91  TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128
            R+    +  +  +   + P                   +L++DI  L   +  L   FH
Sbjct: 259 VRYVTSEEFTNEFIEALQTPNQSQGQIADFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 318

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS++Q +  +++ +   P +       L SR ++   V I  PD +    ++  M + 
Sbjct: 319 TFNSLYQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDIKPPDLETRIAILRMMASM 378

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
               +   +   I +R   ++   E  + ++  +A      ++++LA + L++    D
Sbjct: 379 NHCNVPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSKALAEQALQDFFATD 436


>gi|313671971|ref|YP_004050082.1| chromosomal replication initiator protein dnaa [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938727|gb|ADR17919.1| chromosomal replication initiator protein DnaA [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 443

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 29/232 (12%)

Query: 38  ISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87
            + D+ +V S+       A+ + + +       + + G  G GK+ L +   +K      
Sbjct: 111 YTFDNFVVGSSNQFPHAAALAVAEGYFQ-TYNPLFIYGGVGLGKTHLMHAIGNKILEKFP 169

Query: 88  ------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLLDF---NDTQLFHII 130
                       +    ++  +K++D      R    +L +D+  L     +  + F+  
Sbjct: 170 KLKILYISSEAFTNEMIYALKSKTMDIFREKYRNIDLLLFDDVQFLAGKTRSTEEFFYTF 229

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           NS++     +++T+   P         L SR     V  I  P  D    +I+K      
Sbjct: 230 NSLYDMQKQIVLTSDKEPNEIPDLEERLRSRFSWGLVADIQPPSVDEKVAIILKRSEIMN 289

Query: 191 IFIDKKLAAYIVQRMERS-LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           I++  ++A ++ + ++   +      + +++  +      IT  LA + L++
Sbjct: 290 IYVSNEVAHFLAENLKGDNIRDLIGALIRLNAFSTFHNEPITIELAKKALEK 341


>gi|237753474|ref|ZP_04583954.1| chromosomal replication initiator protein dnaA [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375741|gb|EEO25832.1| chromosomal replication initiator protein dnaA [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 434

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 95/256 (37%), Gaps = 29/256 (11%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVIL 69
           P+K+K+++   +++    +       +    +V ++   A  +  +     S     +++
Sbjct: 82  PNKKKDNKANIRKQNTASNL--NPSFTFTSFIVGNSNTFAFNVAKAVAQNQSTSYNPLVI 139

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID------------------TRKPV 111
            G +G GK+ L N   + +     + I  + +  L D                      +
Sbjct: 140 YGNTGLGKTHLLNAIGNANIIVGKNVIYTTSEQFLNDFLLHIRNNTMDRFREKYRACDYL 199

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI  L   D    + FH  N + +    +++T+   P         L +R  +  + 
Sbjct: 200 LIDDIQFLSGKDQIQEEFFHTFNELKENHKQIVLTSDRPPKDMNGLEERLKTRFTSGLLA 259

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL--SR 226
            I  P+ +    +I        I +   +  +I   +  ++   E ++ K++  ++  + 
Sbjct: 260 DIQPPELETKINIIRAKCELDGIHLSDSIINFIAANINDNIREIEGVLVKLN-FSMNVTN 318

Query: 227 GMGITRSLAAEVLKET 242
              I+     ++LKE 
Sbjct: 319 IQEISLDFVKDILKEY 334


>gi|254780033|ref|YP_003058140.1| chromosomal replication initiation protein [Helicobacter pylori
           B38]
 gi|254001946|emb|CAX30203.1| Chromosomal replication initiator protein DnaA [Helicobacter pylori
           B38]
          Length = 455

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           QI + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 QIILPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|218437014|ref|YP_002375343.1| chromosomal replication initiation protein [Cyanothece sp. PCC
           7424]
 gi|226735799|sp|B7K7Y7|DNAA_CYAP7 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|218169742|gb|ACK68475.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC
           7424]
          Length = 453

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 71/210 (33%), Gaps = 26/210 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------ 85
               +    +V S    A     +    P R    + L G  G GK+ L    +      
Sbjct: 113 NPKYTFSRFVVGSNNRLAHAATLAVAESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLQM 172

Query: 86  -----------DKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFH 128
                      ++  +   + I +       +   T   +L++DI  ++  +    + FH
Sbjct: 173 YPDSKVFYVSTEQFTNDLITAIRQDSLQSFREHYRTADILLVDDIQFIEGKEYTQEEFFH 232

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++ +   P         L SR     +  I +PD +    ++ K    
Sbjct: 233 TFNTLHEAGKQVVIASDRPPKQIPTLEDRLISRFSMGLIADIQVPDLETRMAILQKKAEY 292

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
             + + +++  YI      ++   E  + +
Sbjct: 293 ENMRLPREVIEYIATHYTSNIRELEGALIR 322


>gi|50953926|ref|YP_061214.1| chromosomal replication initiator protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|61212563|sp|Q6AHN6|DNAA_LEIXX RecName: Full=Chromosomal replication initiator protein DnaA
 gi|50950408|gb|AAT88109.1| chromosomal replication initiator protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 473

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 87/258 (33%), Gaps = 32/258 (12%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVV 67
             P  +    P+N + +L          S D+ ++  +      A   +   P+     +
Sbjct: 117 VAPPAEITAPPRNGDTRL------NSKYSFDNFVIGQSNRFAHAAAVAVAEAPAKAYNPL 170

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTR--------------------FSNIAKSLDSILIDT 107
            + G SG GK+ L +     + S                       +N   S        
Sbjct: 171 FIYGDSGLGKTHLLHAIGHYAMSLYPGIRVRYVSSEEFTNDFINSIANNRGSSFQARYRN 230

Query: 108 RKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI             FH  N++H ++  +++T+   P         + SR + 
Sbjct: 231 IDILLIDDIQFLQRAVETQEAFFHTFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEW 290

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             +  + +PD +    ++ K     +I +   +  ++  ++  ++   E  + ++   A 
Sbjct: 291 GLITDVQVPDLETRIAILRKKAQSEKIQVPDDILEFMASKISSNIRELEGTLIRVTAFAS 350

Query: 225 SRGMGITRSLAAEVLKET 242
                +   L   VLK+ 
Sbjct: 351 LNRTPVDMPLVQTVLKDL 368


>gi|294786219|ref|ZP_06751473.1| DNA-directed DNA replication initiator protein [Parascardovia
           denticolens F0305]
 gi|294485052|gb|EFG32686.1| DNA-directed DNA replication initiator protein [Parascardovia
           denticolens F0305]
          Length = 531

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 84/243 (34%), Gaps = 31/243 (12%)

Query: 35  CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------ 84
               + D  +  ++       AV + +S  +     + + G SG GK+ L N        
Sbjct: 186 NPFATFDTFVQGTSNRFAKSAAVMVAESPGTVDYNPLFIYGESGLGKTHLLNAIGNYVLR 245

Query: 85  -----------SDKSRSTRFSNIAKSLDSILIDTR--------KPVLLEDIDLLDFND-- 123
                      +++  +   S +A                     +LL+DI     ++  
Sbjct: 246 QDPTMIVRYVTAEEFVNDFVSALAAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETM 305

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            Q FH  N +      +++ +   P         L +R     VV ++ P+ D    ++ 
Sbjct: 306 EQFFHTFNELVSTGKQIVIASDVAPNHLKGFNERLRTRFNNGLVVDVAPPEKDTRLAILR 365

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
              ++  I +   +  YI  ++  S+   E  + ++  +A      +T SLA + L +  
Sbjct: 366 LKASNSNIEVPADVLDYIADKITDSVRELEGALTRVTAIATLNNQPVTHSLAEQTLHDFF 425

Query: 244 QCD 246
             D
Sbjct: 426 NSD 428


>gi|165975458|ref|YP_001651051.1| chromosomal replication initiation protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165875559|gb|ABY68607.1| chromosomal replication initiator protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 494

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 92/242 (38%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN--- 82
           F       ++ ++ +   + + A  +       P         L G +G GK+ L +   
Sbjct: 154 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 213

Query: 83  --IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND---------- 123
             I     ++      ++     ++   K   +E+       +D+L  +D          
Sbjct: 214 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFSNKEAS 273

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  NS+ + +  +++ +  FP +       + SRL       I  P+ +    ++
Sbjct: 274 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 333

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240
           +K   +R + + +++A +I Q++  ++   E  ++++  +A        IT     E LK
Sbjct: 334 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 391

Query: 241 ET 242
           + 
Sbjct: 392 DL 393


>gi|239624133|ref|ZP_04667164.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520519|gb|EEQ60385.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 456

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 26/208 (12%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT------- 107
           P      + + G  G GK+ L +  +         S      +++  + LID        
Sbjct: 145 PGEIYNPLFIYGGVGLGKTHLMHAIAHFILKNNPSSKILYVTSETFTNELIDAIRNKNNI 204

Query: 108 -----------RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         +L++DI  +   +    + FH  N++++    +++++   P     
Sbjct: 205 TTTEFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNTLYESKKQIIISSDKPPKEIET 264

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR +    V I  PD +    ++ K        ID ++  YI   ++ ++   E
Sbjct: 265 LEERLRSRFEWGLTVDIQSPDYETRMAILRKKEEMEGYNIDNEVIKYIATNIKSNIRELE 324

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + K+  L+      IT  LA E LK+
Sbjct: 325 GALTKIVALSRLNKCDITLELAEEALKD 352


>gi|308235533|ref|ZP_07666270.1| chromosomal replication initiation protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311114014|ref|YP_003985235.1| DNA-directed DNA replication initiator protein [Gardnerella
           vaginalis ATCC 14019]
 gi|310945508|gb|ADP38212.1| DNA-directed DNA replication initiator protein [Gardnerella
           vaginalis ATCC 14019]
          Length = 535

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 86/238 (36%), Gaps = 31/238 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIWS------DKSRS 90
            D  +   +   A  +  +      R    + + G SG GK+ L N         D S  
Sbjct: 197 FDTFVPGDSNRFARTVALAVAEGSGRDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLK 256

Query: 91  TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128
            R+    +  +  +   +                     +L++DI  L   +  L   FH
Sbjct: 257 VRYITSEEFTNEFIEALQNTSQNQGQIANFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 316

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++Q +  +++ +   P +       L SR ++   V I  PD +    ++  M + 
Sbjct: 317 TFNALYQANKRIVIASDVAPKNLRGFESRLISRFESGLTVDIKPPDLETRIAILRMMASM 376

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
               +   +   I +R   ++   E  + ++  +A      ++++LA + L++    D
Sbjct: 377 NGSNVPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSKALAEQALQDFFASD 434


>gi|33152000|ref|NP_873353.1| chromosomal replication initiator protein [Haemophilus ducreyi
           35000HP]
 gi|61212729|sp|Q7VMW1|DNAA_HAEDU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|33148222|gb|AAP95742.1| chromosomal replication initiator protein [Haemophilus ducreyi
           35000HP]
          Length = 448

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 91/263 (34%), Gaps = 33/263 (12%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGIS------RDDLLVHSAIEQAVRLIDSWPSWPS-- 64
           P +Q        +E+L                  D+ +   + + A  +       P   
Sbjct: 85  PTEQNLSASSTNKEELTQDTVHKFKTGLNGRLTFDNFVQGKSNQLAKAVAQQVADNPGES 144

Query: 65  --RVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKPV---- 111
                 L G +G GK+ L +   +       ++R     +     D +       +    
Sbjct: 145 HCNPFSLYGGTGLGKTHLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKNNTIENFK 204

Query: 112 ---------LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
                    +++DI      +    + FH  NS+ + +  +++ +  FP +       + 
Sbjct: 205 KFYRSLDVLMIDDIQFFAKKEASQEEFFHTFNSLFERNKQIILASDHFPKNIENIEERIK 264

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           SRL       I  P+ +    +++K   +R + + +++A Y+ Q++  ++   E  ++++
Sbjct: 265 SRLNWGVSTAIEPPELETRVAILMKKAEERNVELPEEVAFYLGQKLRTNVRELEGAINRV 324

Query: 220 DNLALSRGMGITRSLAAEVLKET 242
                     IT     E LK+ 
Sbjct: 325 SAWCNFTKRQITIDAVRETLKDL 347


>gi|328949541|ref|YP_004366876.1| Chromosomal replication initiator protein dnaA [Marinithermus
           hydrothermalis DSM 14884]
 gi|328449865|gb|AEB10766.1| Chromosomal replication initiator protein dnaA [Marinithermus
           hydrothermalis DSM 14884]
          Length = 448

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 92/235 (39%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + ++ +V +    A     +    P R    + + G  G GK+ L +       + 
Sbjct: 115 NPKYTFENFVVGANNNMAHAAALAVAESPGRAYNPLFIYGGVGLGKTHLMHA-VGHYVAQ 173

Query: 92  RFSNI------AKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127
           RF ++       ++  + LI+  +                +L++DI  +   +    + F
Sbjct: 174 RFPHLKIEYVSTETFTNELINAIREDKMSEFRERYRSVDLLLVDDIQFIAGKERTQEEFF 233

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++++    +++++   P         L SR +   +  I  P+ +    ++     
Sbjct: 234 HTFNALYEAHKQIILSSDRPPKDILTLESRLRSRFEWGLITDIQPPELETRIAILKMNAE 293

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            R I I +++  YI +++  ++   E  + ++   A   G+ IT+ +AA  L + 
Sbjct: 294 YRGISIPEEVLEYIARQITSNIRELEGALMRLIAYASLNGVEITKQVAARALSDV 348


>gi|291541862|emb|CBL14972.1| chromosomal replication initiator protein DnaA [Ruminococcus bromii
           L2-63]
          Length = 452

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 85/239 (35%), Gaps = 30/239 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS---- 90
            + D  +V S+ + A     +  + PS     + L G SG GK+ L     ++ +     
Sbjct: 118 YTFDTFIVGSSNKFAHAACLAVATNPSHAYNPLFLYGNSGLGKTHLLYAIGNEIKKNDPS 177

Query: 91  -----TRFSNIAKSLDSILIDT-----------RKPVLLEDIDLLDFND---TQLFHIIN 131
                 +  +    L   L                 +L++D+  +   +    + FH  N
Sbjct: 178 KVICYIKGDDFTVELVESLRLAKMNEFRQKYRQADILLVDDVQFIGGKESTQEEFFHTFN 237

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +++     +++T+   P         L SR +   +  I  PD +    +I +      +
Sbjct: 238 ALYDARKQIVLTSDRPPKEIKTLEDRLRSRFEQDLIADIQPPDLETRIAIIKRKAELDGV 297

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS----LAAEVLKETQQCD 246
            I  ++  Y+  +++ ++   E  V K+       G   T +    + +++L      +
Sbjct: 298 EISDEVCEYVASKIKANIRQLEGTVKKIKAKYYLDGEKPTINSVQGIISDILNNDAPPE 356


>gi|83642915|ref|YP_431350.1| chromosomal replication initiation protein [Hahella chejuensis KCTC
           2396]
 gi|123767560|sp|Q2SQZ9|DNAA_HAHCH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|83630958|gb|ABC26925.1| chromosomal replication initiator protein DnaA [Hahella chejuensis
           KCTC 2396]
          Length = 467

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 78/234 (33%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + +  +   + + A          P      + L G  G GK+ L       I+  
Sbjct: 133 NPTFTFETFVEGKSNQLARAAAMQVADNPGSAYNPLFLYGGVGLGKTHLMQAVGNAIFKK 192

Query: 87  KSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFH 128
              +      ++   + ++                    +L++DI      +    + FH
Sbjct: 193 NPNAKILYLHSERFVADMVKALQLNAFNEFKRLYRSVDALLIDDIQFFARKERSQEEFFH 252

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T   +P         L SR      V +  P+ +    +++K    
Sbjct: 253 TFNALLEGGQQMILTCDRYPKEIDHMEERLKSRFGWGLTVMVEPPELETRVAILMKKAEQ 312

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +  + A +I Q++  ++   E  +  +   A   G  IT +   E LK+ 
Sbjct: 313 ANVHLSSESAFFIAQKIRSNVRELEGALKLVIANAHFTGQEITPAFIRECLKDL 366


>gi|170780463|ref|YP_001708795.1| chromosomal replication initiation protein [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|189044633|sp|B0RH69|DNAA_CLAMS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|169155031|emb|CAQ00127.1| chromosomal replication initiator protein DnaA [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 476

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
                 D  ++  +      A   +   P+     + + G SG GK+ L +     + S 
Sbjct: 134 NPKYGFDTFVIGGSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAISL 193

Query: 92  R--------------------FSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128
                                 +N   SL          +L++DI  L   D      FH
Sbjct: 194 YPGIRVRYVSSEEFTNDFINSIANNRSSLFQSRYRDNDILLIDDIQFLQGKDSTQEAFFH 253

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H ++  +++T+   P         + SR +   +  +  PD +    ++ K    
Sbjct: 254 TFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEWGLITDVQAPDLETRIAILRKKAQS 313

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ +   +  Y+  ++  ++   E  + ++   A      +  +L   VLK+ 
Sbjct: 314 EKLQVPDDILEYMATKVTSNIRELEGTLIRVTAFASLNKTPVDLALVQTVLKDL 367


>gi|152981050|ref|YP_001351691.1| chromosomal replication initiation protein [Janthinobacterium sp.
           Marseille]
 gi|166214676|sp|A6STW2|DNAA_JANMA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|151281127|gb|ABR89537.1| chromosomal replication initiator protein DnaA [Janthinobacterium
           sp. Marseille]
          Length = 460

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 91/257 (35%), Gaps = 32/257 (12%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68
           +P    +  P+  + ++         ++ D  +   A + A        + P      + 
Sbjct: 109 IPSNATDHTPRRDQSRI------NTALTFDSFVTGKANQLARAAAIQVANNPGSSYNPLF 162

Query: 69  LVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILID--------------TR 108
           L G  G GK+ L +   ++  +       R+ +  + +  ++                + 
Sbjct: 163 LYGGVGLGKTHLIHAIGNQVLADNPDVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSL 222

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI           + F+   ++      +++T+ T+P         L SR  + 
Sbjct: 223 DLLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSG 282

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             V +  P+ +    +++K      +     +A ++ + +  ++   E  + K+   +  
Sbjct: 283 LTVAVEPPELEMRVAILLKKAVQEGVTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRF 342

Query: 226 RGMGITRSLAAEVLKET 242
            G  IT  +  + LK+ 
Sbjct: 343 HGKDITIEVVKDALKDL 359


>gi|325270017|ref|ZP_08136625.1| DNA-directed DNA replication initiator protein DnaA [Prevotella
           multiformis DSM 16608]
 gi|324987602|gb|EGC19577.1| DNA-directed DNA replication initiator protein DnaA [Prevotella
           multiformis DSM 16608]
          Length = 468

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 84/253 (33%), Gaps = 33/253 (13%)

Query: 21  PKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSG 76
           P++ + QL          S  + +   +        + + +   +     + + GPSG G
Sbjct: 123 PQDIDSQL------DPHKSFGNYVEGDSNKLPRSIGLSIAEHPNTTQFNPMFIYGPSGCG 176

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSILID--------------------TRKPVLLEDI 116
           K+ L N    +++          + + L                      T   ++++DI
Sbjct: 177 KTHLINAIGLRTKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDVLIVDDI 236

Query: 117 D---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
                        FHI N + +    +++ +   PV        L +R     + ++  P
Sbjct: 237 QEWATATKTQDTFFHIFNHLFRNGRRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKP 296

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           +      ++        + I + +  +I +    S+   + +++ +   ++     +   
Sbjct: 297 NVQLCIDILHSKIKRDGLNIPEDVVRFIAETANGSVRDLQGVINSLLAYSVVYNSNVDMR 356

Query: 234 LAAEVLKETQQCD 246
           LA  V+K   + D
Sbjct: 357 LAERVIKRAVKID 369


>gi|298245521|ref|ZP_06969327.1| chromosomal replication initiator protein DnaA [Ktedonobacter
           racemifer DSM 44963]
 gi|297553002|gb|EFH86867.1| chromosomal replication initiator protein DnaA [Ktedonobacter
           racemifer DSM 44963]
          Length = 536

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 82/232 (35%), Gaps = 26/232 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  +V  + + A     +    P R+   + L G  G GK+ L +    +    
Sbjct: 197 NSRYTFDAFIVGKSNQLAHAASLAASENPGRIYNPLFLYGGVGLGKTHLLHAVGHEGEVK 256

Query: 92  RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFHII 130
             + +  + +    +    +                  L++DI  +      + + FH  
Sbjct: 257 GLTVLYVTSEKFTNEIINAIRYQKTEEFRAKYRQIDILLVDDIQFIAGKESTEEEFFHTF 316

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           NS+H  +  +++T+   P +    L D L SR +   +  +  P+ +    ++       
Sbjct: 317 NSLHNANKQIVVTSDRPPKAIH-SLQDRLRSRFEWGLLADVQPPEYEHRLAILRSKTDLL 375

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              +   +  Y+ +    S+   E  ++++   A      IT  LA + L+ 
Sbjct: 376 HFSVPSAVVEYVARPECSSVRELEGALNRVIAYATLHNAPITVQLATDALEN 427


>gi|294790224|ref|ZP_06755382.1| DNA-directed DNA replication initiator protein [Scardovia inopinata
           F0304]
 gi|294458121|gb|EFG26474.1| DNA-directed DNA replication initiator protein [Scardovia inopinata
           F0304]
          Length = 572

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 31/243 (12%)

Query: 35  CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------ 84
               + D  +  ++       AV + ++  +     + + G SG GK+ L N        
Sbjct: 229 NPFATFDTFVQGTSNRFAKSAAVIVAEAPGTADYNPLFIYGGSGLGKTHLLNAIGNYVLQ 288

Query: 85  -----------SDKSRSTRFSNIAKSLDSILIDTR--------KPVLLEDIDLLDFND-- 123
                      +++  +   S +A                     +LL+DI     ++  
Sbjct: 289 QDPTMTVRYVTAEEFVNDFVSALAAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETM 348

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            Q FH  N +      +++ +   P +       L +R     VV ++ P+ +    ++ 
Sbjct: 349 EQFFHTFNELTSTGKQIVIASDVAPNNLKGFNERLRTRFNKGLVVDVAPPEKETRVAILR 408

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
              ++  + +   +  YI  ++  S+   E  + ++  +A      +TR+LA + L +  
Sbjct: 409 LKVSNSNLAVPDDVLDYIADKITDSVRELEGALTRVTAIATLNDQQVTRTLAEQTLHDFF 468

Query: 244 QCD 246
             D
Sbjct: 469 NSD 471


>gi|227889156|ref|ZP_04006961.1| DNA-directed DNA replication initiator protein [Lactobacillus
           johnsonii ATCC 33200]
 gi|227850385|gb|EEJ60471.1| DNA-directed DNA replication initiator protein [Lactobacillus
           johnsonii ATCC 33200]
          Length = 464

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 88/265 (33%), Gaps = 35/265 (13%)

Query: 13  PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           P++    QP+ K  Q                    + D  +     + A     +    P
Sbjct: 98  PERLVTPQPRIKTNQEILENRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 157

Query: 64  SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109
                 + + G  G GK+ L         ++K  +      +++  +  I++ K      
Sbjct: 158 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAE 217

Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     +L++DI      +    + FH   +++     ++MT+   P         
Sbjct: 218 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 277

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      V+I+ PD +    ++ K      + ID     YI  +++ ++   E  + 
Sbjct: 278 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGALV 337

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
           K+   A      I   LA E L + 
Sbjct: 338 KVQAHATIEREDINVDLAKEALADL 362


>gi|42518085|ref|NP_964015.1| chromosomal replication initiator protein DnaA [Lactobacillus
           johnsonii NCC 533]
 gi|61212661|sp|Q74M34|DNAA_LACJO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|41582369|gb|AAS07981.1| chromosomal replication initiator protein DnaA [Lactobacillus
           johnsonii NCC 533]
 gi|329666392|gb|AEB92340.1| chromosomal replication initiator protein DnaA [Lactobacillus
           johnsonii DPC 6026]
          Length = 454

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 88/265 (33%), Gaps = 35/265 (13%)

Query: 13  PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           P++    QP+ K  Q                    + D  +     + A     +    P
Sbjct: 88  PERLVTPQPRIKTNQEILENRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 147

Query: 64  SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109
                 + + G  G GK+ L         ++K  +      +++  +  I++ K      
Sbjct: 148 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAE 207

Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     +L++DI      +    + FH   +++     ++MT+   P         
Sbjct: 208 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 267

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      V+I+ PD +    ++ K      + ID     YI  +++ ++   E  + 
Sbjct: 268 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGALV 327

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
           K+   A      I   LA E L + 
Sbjct: 328 KVQAHATIEREDINVDLAKEALADL 352


>gi|148271179|ref|YP_001220740.1| chromosomal replication initiation protein [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|166201875|sp|A5CLT3|DNAA_CLAM3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|147829109|emb|CAN00006.1| chromosomal replication initiator protein dnaA [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 477

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
                 D  ++  +      A   +   P+     + + G SG GK+ L +     + S 
Sbjct: 135 NPKYGFDTFVIGGSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAISL 194

Query: 92  R--------------------FSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128
                                 +N   SL          +L++DI  L   D      FH
Sbjct: 195 YPGIRVRYVSSEEFTNDFINSIANNRSSLFQSRYRDNDILLIDDIQFLQGKDSTQEAFFH 254

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H ++  +++T+   P         + SR +   +  +  PD +    ++ K    
Sbjct: 255 TFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEWGLITDVQAPDLETRIAILRKKAQS 314

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ +   +  Y+  ++  ++   E  + ++   A      +  +L   VLK+ 
Sbjct: 315 EKLQVPDDILEYMATKVTSNIRELEGTLIRVTAFASLNKTPVDLALVQTVLKDL 368


>gi|83749733|ref|ZP_00946710.1| DnaA [Ralstonia solanacearum UW551]
 gi|207741915|ref|YP_002258307.1| chromosomal replication initiator protein dnaa [Ralstonia
           solanacearum IPO1609]
 gi|83723585|gb|EAP70786.1| DnaA [Ralstonia solanacearum UW551]
 gi|206593301|emb|CAQ60228.1| chromosomal replication initiator protein dnaa [Ralstonia
           solanacearum IPO1609]
          Length = 531

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
              ++ D+L+   A + A        + P +    + L G  G GK+ L +   +     
Sbjct: 197 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 256

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128
             ++R           D +    RK              +L++DI           + F+
Sbjct: 257 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 316

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    +++K    
Sbjct: 317 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 376

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + +++A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 377 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 430


>gi|297243220|ref|ZP_06927155.1| chromosomal replication initiator protein DnaA [Gardnerella
           vaginalis AMD]
 gi|296888754|gb|EFH27491.1| chromosomal replication initiator protein DnaA [Gardnerella
           vaginalis AMD]
          Length = 537

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIWS------DKSRS 90
            D  +   +   A  +  +      R    + + G SG GK+ L N         D S  
Sbjct: 197 FDTFVPGDSNRFARTVALAVAEGSGRDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLK 256

Query: 91  TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128
            R+    +  +  +   + P                   +L++DI  L   +  L   FH
Sbjct: 257 VRYVTSEEFTNEFIEALQTPNQSQGQIADFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 316

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS++Q +  +++ +   P +       L SR ++   V I  PD +    ++  M + 
Sbjct: 317 TFNSLYQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDIKPPDLETRIAILRMMASM 376

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
               +   +   I +R   ++   E  + ++  +A      ++++LA + L++    D
Sbjct: 377 NHCNVPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSKALAEQALQDFFATD 434


>gi|268318563|ref|YP_003292219.1| Chromosomal replication initiator protein dnaA [Lactobacillus
           johnsonii FI9785]
 gi|262396938|emb|CAX65952.1| Chromosomal replication initiator protein dnaA [Lactobacillus
           johnsonii FI9785]
          Length = 454

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 88/265 (33%), Gaps = 35/265 (13%)

Query: 13  PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           P++    QP+ K  Q                    + D  +     + A     +    P
Sbjct: 88  PERLVTPQPRIKTNQEILENRRDEFAQDLQLTSKYTFDTFVQGEGNKLAAGAALAVADNP 147

Query: 64  SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109
                 + + G  G GK+ L         ++K  +      +++  +  I++ K      
Sbjct: 148 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQVE 207

Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     +L++DI      +    + FH   +++     ++MT+   P         
Sbjct: 208 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 267

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      V+I+ PD +    ++ K      + ID     YI  +++ ++   E  + 
Sbjct: 268 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGALV 327

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
           K+   A      I   LA E L + 
Sbjct: 328 KVQAHATIEREDINVDLAKEALADL 352


>gi|196230261|ref|ZP_03129124.1| chromosomal replication initiator protein DnaA [Chthoniobacter
           flavus Ellin428]
 gi|196225858|gb|EDY20365.1| chromosomal replication initiator protein DnaA [Chthoniobacter
           flavus Ellin428]
          Length = 464

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 27/221 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               + D  +V +  + A     +    P+R    + + G  G GK+ L +     I S 
Sbjct: 128 NPRNNFDSFVVGTNNQFAHAACKAVSDAPARTYNPLFIYGGVGLGKTHLMHAIGHAILSK 187

Query: 87  KSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLD---FNDTQLFH 128
           +         +++  +  ID                   +L++DI  L        + FH
Sbjct: 188 RKPGKVVYITSEAFTNEFIDAIQNNTLIKFRKRYRQADVLLIDDIQFLADKGRTQEEFFH 247

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++      +++++   P         L SR +     ++  PD +    ++ K    
Sbjct: 248 TFNTLFDGHKQIVLSSDRPPSEIANLETRLVSRFEWGLTAELQAPDIETRVAILRKKAQS 307

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRGM 228
            +I +D ++  ++  R+  ++   E  + ++ +  +LS G 
Sbjct: 308 VEIQLDDEIIQFLAARIRTNVRRLEGALMRVASYVSLSHGR 348


>gi|225386353|ref|ZP_03756117.1| hypothetical protein CLOSTASPAR_00097 [Clostridium asparagiforme
           DSM 15981]
 gi|225047535|gb|EEG57781.1| hypothetical protein CLOSTASPAR_00097 [Clostridium asparagiforme
           DSM 15981]
          Length = 456

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 83/236 (35%), Gaps = 29/236 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLID---SWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
               + D  +V S    A          P      + + G  G GK+ L +  +      
Sbjct: 117 NPKYTFDTFVVGSNNNLAHAAALAVAESPGEIYNPLFIYGGVGLGKTHLMHAIAHFILKN 176

Query: 87  KSRSTRFSNIAKSLDSILIDT------------------RKPVLLEDIDLLDFND---TQ 125
              S      +++  + LID                      +L++DI  +   +    +
Sbjct: 177 TPTSKILYVSSETFTNELIDAIRNKNNITTTEFREKYRNNDVLLIDDIQFIIGKESTQEE 236

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++++    +++++   P         L SR +    V I  PD +    ++ K 
Sbjct: 237 FFHTFNTLYESKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILQKK 296

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                  ID ++  YI   ++ ++   E  + K+  L+      IT  LA E LK+
Sbjct: 297 EELEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLNKCDITLELAEEALKD 352


>gi|56961783|ref|YP_173505.1| chromosomal replication initiation protein [Bacillus clausii
           KSM-K16]
 gi|61212498|sp|Q5WM31|DNAA_BACSK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56908017|dbj|BAD62544.1| chromosome replication initiator protein DnaA [Bacillus clausii
           KSM-K16]
          Length = 451

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 93/262 (35%), Gaps = 36/262 (13%)

Query: 12  VPDKQKNDQP-KNKEEQLFFSFP-RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           +P++     P K+   Q   S        + +  ++ S    A     +    P+R    
Sbjct: 91  LPEQTPQTPPEKDVAGQSTLSQTMLNDKYTFNTFVIGSGNRFAHAASLAVAEAPARAYNP 150

Query: 67  VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------------ 109
           + + G  G GK+ L +            +      ++   +  I+  +            
Sbjct: 151 LFIYGGVGLGKTHLMHAIGHYVMEHNPNAKVVYLSSEKFTNEFINAIRDNKAVHFRNKYR 210

Query: 110 ---PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI  +        + FH  N++H+    +++++   P         L SR +
Sbjct: 211 NVDVLLIDDIQFIAGKIQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFE 270

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKM 219
              +  I+ PD +    ++ K      + I  ++  YI  +++   R L     ++V   
Sbjct: 271 WGLITDITPPDLETRIAILRKKAKAENLDIPNEVMLYIANQIDTNIRELEGALIRVVA-- 328

Query: 220 DNLALSRGMGITRSLAAEVLKE 241
              +L     +   LAAE LK+
Sbjct: 329 -YSSLINQ-DMNADLAAEALKD 348


>gi|207727478|ref|YP_002255872.1| chromosomal replication initiator DnaA [Ralstonia solanacearum
           MolK2]
 gi|206590715|emb|CAQ56327.1| chromosomal replication initiator protein dnaa [Ralstonia
           solanacearum MolK2]
          Length = 534

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
              ++ D+L+   A + A        + P +    + L G  G GK+ L +   +     
Sbjct: 200 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 259

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128
             ++R           D +    RK              +L++DI           + F+
Sbjct: 260 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 319

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    +++K    
Sbjct: 320 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 379

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + +++A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 380 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 433


>gi|34495456|ref|NP_899671.1| chromosomal replication iniciator protein DnaA [Chromobacterium
           violaceum ATCC 12472]
 gi|61212703|sp|Q7P259|DNAA_CHRVO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|34101312|gb|AAQ57681.1| chromosomal replication iniciator protein DnaA [Chromobacterium
           violaceum ATCC 12472]
          Length = 467

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 87/234 (37%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-----NIWS 85
               + D L+           A+++ ++        + + G  G GK+ L      +++ 
Sbjct: 132 NPSFTFDTLVTGKGNQLARAAAMQIAENPGDQAYNPLFVYGGVGLGKTHLIQAIGNHVFQ 191

Query: 86  DKSRS-TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLF 127
              ++  R+ +  + +  I+                +   +L++DI           + F
Sbjct: 192 KNPQAKIRYIHAERYVADIMRAYQHKAFDEFKRYYHSLDLLLIDDIQFFAGKNRTQEEFF 251

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++ +    ++MT  ++P         L SR      V+I  P+ +    +++K   
Sbjct: 252 YAFNALIEGGKQVIMTCDSYPKQIEGMEERLISRFSWGLTVEIQPPELEMRVAILMKKAE 311

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              I ++  +A +I Q +  ++   E  + ++   A      IT  L  E LK+
Sbjct: 312 ADSIKLEHNVAFFIAQNVRSNVRELEGALKRVVAYARFTSQNITLELVKEALKD 365


>gi|88854499|ref|ZP_01129166.1| chromosomal replication initiator protein [marine actinobacterium
           PHSC20C1]
 gi|88816307|gb|EAR26162.1| chromosomal replication initiator protein [marine actinobacterium
           PHSC20C1]
          Length = 471

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 93/256 (36%), Gaps = 32/256 (12%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVIL 69
           P   +   P+  + +L          S D+ ++  +      A   +   P+     + +
Sbjct: 113 PTPIEQSPPRRSDSRL------NPKYSFDNFVIGGSNRFAHAAAVAVAEAPAKAYNPLFI 166

Query: 70  VGPSGSGKSCLANIWSDKSRSTR-----------------FSNIAKSLDSILIDTRKPV- 111
            G SG GK+ L +     + S                    ++IA +  S+     + + 
Sbjct: 167 YGGSGLGKTHLLHAIGHYAESLYPGIRVRYVSSEEFTNDFINSIANNRASVFQSRYREID 226

Query: 112 --LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
             L++DI  L   D      FH  N++H ++  +++T+   P         + SR +   
Sbjct: 227 ILLIDDIQFLQGKDSTQEAFFHTFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEWGL 286

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  +  PD +    ++ K     ++ +   +  ++  ++  ++   E  + ++   A   
Sbjct: 287 ITDVQAPDLETRIAILRKKAQSEKMQVGNDILEFMASKVSSNIRELEGTLIRVTAFASLN 346

Query: 227 GMGITRSLAAEVLKET 242
              +  +L   VLK+ 
Sbjct: 347 RTEVDMALVQTVLKDL 362


>gi|83855142|ref|ZP_00948672.1| chromosomal replication initiation protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83941665|ref|ZP_00954127.1| chromosomal replication initiation protein [Sulfitobacter sp.
           EE-36]
 gi|83842985|gb|EAP82152.1| chromosomal replication initiation protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83847485|gb|EAP85360.1| chromosomal replication initiation protein [Sulfitobacter sp.
           EE-36]
          Length = 452

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 85/244 (34%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--K 87
           P     S D+ +V    E A                 + L G  G GK+ L +  +   +
Sbjct: 111 PLDARFSFDNFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAQELQ 170

Query: 88  SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126
            R    + +  S +                    +  +   ++++D+  +   D    + 
Sbjct: 171 VRKPELNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKDSTQEEF 230

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++  K+
Sbjct: 231 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQNKV 290

Query: 186 FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            A R     + ++  +  ++  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 291 EAQRKNYPGLEVEAGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREINMDLTQDCLAD 350

Query: 242 TQQC 245
             + 
Sbjct: 351 VLRA 354


>gi|313894736|ref|ZP_07828297.1| chromosomal replication initiator protein DnaA [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312976645|gb|EFR42099.1| chromosomal replication initiator protein DnaA [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 487

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 27/223 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP----SRVVILVGPSGSGKSCLANIWSDKSRS 90
               + D  +   + + +  +  S    P    +  + + G  G GK+ L +    K  +
Sbjct: 151 NPKYTFDAFVTGRSNQFSYAMAKSVAEAPGLPSNNPLFIYGGVGLGKTHLMHAVGHKILA 210

Query: 91  TR-----------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFN---DTQLF 127
                               S I K       +    +   L++DI           + F
Sbjct: 211 DHPDKRVLYIASMDFTNEFISAIGKKNTDEFREKYYAIDVLLIDDIQFFSGQLQTQAEFF 270

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            + N +      ++MT    P         L SR     VV I  P+ +    ++ K   
Sbjct: 271 QMFNKLRDSGRQIIMTCDRQPQEVKGLEDRLISRFSGGVVVDIQPPEFETRMAILQKKAQ 330

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             +I I   +  YI  R++ ++   E  + ++   A +  + I
Sbjct: 331 SEEIDIPGDVMTYIASRVDSNIRELEGALTRLIKYASTMRLPI 373


>gi|269958921|ref|YP_003328710.1| chromosomal replication initiation protein [Anaplasma centrale str.
           Israel]
 gi|269848752|gb|ACZ49396.1| chromosomal replication initiation protein [Anaplasma centrale str.
           Israel]
          Length = 471

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 87/242 (35%), Gaps = 28/242 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85
           P     + D+ +V    E A           + +     + L G  G GK+ L +  +  
Sbjct: 134 PLDPRFTFDNFVVGKPNELAFAAARRVAESSAPIPGSNPLFLYGGVGLGKTHLMHAIAWY 193

Query: 86  --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124
                          +    ++    +S D +L   +      ++++D+  +   D    
Sbjct: 194 ILNSSVKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 253

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++  
Sbjct: 254 EFFHTFNALIDQNKQLVISADRSPSDLDGVEDRIKSRLGWGLVADINETTFELRLGILQL 313

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 + +  ++  ++ + ++ ++   E  ++K+   +   G  +T   A+ +L +  +
Sbjct: 314 KTEKMGVHVPNEVLEFLAKNIKSNIRELEGALNKVVAHSSLVGSSVTIESASGILSDLLR 373

Query: 245 CD 246
            +
Sbjct: 374 AN 375


>gi|266620978|ref|ZP_06113913.1| ribosomal subunit interface protein [Clostridium hathewayi DSM
           13479]
 gi|288867359|gb|EFC99657.1| ribosomal subunit interface protein [Clostridium hathewayi DSM
           13479]
          Length = 308

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 76/201 (37%), Gaps = 26/201 (12%)

Query: 67  VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT-------------- 107
           + + G  G GK+ L +     I  +   +      ++   + LID               
Sbjct: 3   LFIYGGVGLGKTHLMHSIGHFILKNNPNAKVLYVTSEKFTNELIDAIRNKNNFSPTEFRD 62

Query: 108 ----RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                  +L++DI  +   +    + FH  N++++    +++++   P         L S
Sbjct: 63  KYRTNDVLLIDDIQFIIGKESTQEEFFHTFNALYESKKQIIISSDKPPKEIETLEERLRS 122

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R +    V I  PD +    ++ K        ID ++  YI   ++ ++   E  + K+ 
Sbjct: 123 RFEWGLTVDIQSPDYETRMAILRKKEEMEGYNIDNEVIKYIATNIKSNIRELEGALTKIV 182

Query: 221 NLALSRGMGITRSLAAEVLKE 241
            L+      IT  LA E LK+
Sbjct: 183 ALSRLDNKEITVELAEEALKD 203


>gi|228470045|ref|ZP_04054956.1| chromosomal replication initiator protein DnaA [Porphyromonas
           uenonis 60-3]
 gi|228308319|gb|EEK17168.1| chromosomal replication initiator protein DnaA [Porphyromonas
           uenonis 60-3]
          Length = 475

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 93/258 (36%), Gaps = 38/258 (14%)

Query: 22  KNKEEQLF-FSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSG 76
           K++  QL  F       +S        +   A      + +           + GPSG G
Sbjct: 127 KSEPRQLPDFDSQLKPQLSFASYYQGESNRTASSIARSIAEKPGQGALNPCFIYGPSGVG 186

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSILIDTR-------------------------KPV 111
           K+ L +         R   +   L  + + +                            +
Sbjct: 187 KTHLCHAI-----GLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVL 241

Query: 112 LLEDID-LLDFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI  L+    TQL  F + N ++     +++T+ T PV+       L SR+  +  +
Sbjct: 242 LIDDIQGLIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTI 301

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           ++  PD D  ++ +     +    + +++  YI + +  S+   + +   +   A   G 
Sbjct: 302 EVERPDYDLRKEYLRHKSEESGSILPREMIDYIARTVTSSIRGLQGVFFSLITRAAVEGC 361

Query: 229 GITRSLAAEVLKETQQCD 246
            IT S   +++ +T + +
Sbjct: 362 DITSSFVKKIVSQTVKQE 379


>gi|67924996|ref|ZP_00518381.1| chromosomal replication initiator protein, DnaA [Crocosphaera
           watsonii WH 8501]
 gi|67853170|gb|EAM48544.1| chromosomal replication initiator protein, DnaA [Crocosphaera
           watsonii WH 8501]
          Length = 455

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 26/210 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               +    +V      A      +   P      + L G  G GK+ L    +      
Sbjct: 117 NPNYNFSRFVVGPTNRMAHAASLAVSESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLEL 176

Query: 88  -SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---TQLFH 128
              +  F    +   + LI                T   +L++DI  ++  +    + FH
Sbjct: 177 YPNANVFYVSTEQFTNDLIASIRQDSMEFFREHYRTADILLVDDIQFIEDKEYTQEEFFH 236

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++ +   P         L SR     +  I +PD +    ++ K    
Sbjct: 237 TFNTLHEAGKQVVIASDRPPQRIPTLQDRLVSRFSMGLIADIQVPDWETRMAILQKKAEY 296

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
             I + + +  YI      ++   E  + +
Sbjct: 297 ENIRLPRDVIEYIATNYTSNIRELEGALIR 326


>gi|270307452|ref|YP_003329510.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp.
           VS]
 gi|270153344|gb|ACZ61182.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp.
           VS]
          Length = 444

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 83/259 (32%), Gaps = 26/259 (10%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
            +      +     P+   E+    F      + +  +V S    A     +    P + 
Sbjct: 79  GFQLVQSAQVPAAAPQTAREKTVSPF--NPRYTFESFIVGSCNRLAHAASLAAAQNPGKS 136

Query: 67  ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN- 122
              + +   +G GK+ L       +   R   +  S +    D    +     +      
Sbjct: 137 YNPLYIYADAGLGKTHLLQAIGHLANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRARY 196

Query: 123 --------------------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                               +  LFH  N +H  +  ++++A + P S       L SR 
Sbjct: 197 RDVDLLLLDDVQFIGGKEQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRF 256

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    ++I  PD+    +++          ++     Y+ Q ++ ++   E  ++++   
Sbjct: 257 EWGLTIEIEPPDEKTRFELLQLKAEQSGAELNMDTLEYLAQEVKHNIRELEGSLNRVLAY 316

Query: 223 ALSRGMGITRSLAAEVLKE 241
           A      IT  LAA  L +
Sbjct: 317 ARLLRATITPDLAARALSD 335


>gi|299065055|emb|CBJ36216.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Ralstonia solanacearum
           CMR15]
          Length = 539

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
              ++ D+L+   A + A        + P +    + L G  G GK+ L +   +     
Sbjct: 205 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 264

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128
             ++R           D +    RK              +L++DI           + F+
Sbjct: 265 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 324

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    +++K    
Sbjct: 325 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 384

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + +++A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 385 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 438


>gi|32266609|ref|NP_860641.1| chromosomal replication initiation protein [Helicobacter hepaticus
           ATCC 51449]
 gi|61212728|sp|Q7VH57|DNAA_HELHP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|32262660|gb|AAP77707.1| chromosomal replication initiator protein DnaA [Helicobacter
           hepaticus ATCC 51449]
          Length = 456

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 87/236 (36%), Gaps = 24/236 (10%)

Query: 32  FPRCLGISRDDLLVHSAIEQAV---RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
                  + ++ +V  + E A    +L+    +     V+L G SG GK+ L N   +  
Sbjct: 116 LSLNPFYTFENFVVGKSNEYAYTIAKLVLQQQASAYNPVLLYGKSGLGKTHLLNAIGNDV 175

Query: 89  RSTRFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFND---TQLF 127
           +    + +  + +  L D                      +L++D+      +    +L 
Sbjct: 176 KEKNKNVLYVTSEDFLNDYMDKIKRKTMDSFRDKYRKCDYLLIDDVQFFGGKEGIQEELL 235

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H     ++MT+   P         L +R +   + +I+ P+ +    +I     
Sbjct: 236 HTFNTLHNSQKQIVMTSDKPPKEIKGLEERLRTRFEWGAMAEITNPELETKIAIIKSKCE 295

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             +I ++ ++  YI   +  ++   E ++  ++          +  +A  VLK  Q
Sbjct: 296 VNRIVLENEVIDYIASNIYGNIRQIEGILSTINAHINLSPESSSLKIAKNVLKNYQ 351


>gi|329113489|ref|ZP_08242270.1| Chromosomal replication initiator protein DnaA [Acetobacter pomorum
           DM001]
 gi|326697314|gb|EGE48974.1| Chromosomal replication initiator protein DnaA [Acetobacter pomorum
           DM001]
          Length = 477

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 87/265 (32%), Gaps = 28/265 (10%)

Query: 9   SFFVPDKQKNDQPKNKEEQLFFSF--PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
           +   P +++         ++            + D  +V    E A          PS V
Sbjct: 115 NAATPAQEEATPAARTAPEVRSDLVTALDSRFTFDTFVVGKPNEFAYACARRVAEKPSSV 174

Query: 67  ----VILVGPSGSGKSCLANIW-SDKSRSTRFSNIAKSLDSILIDTRKPV---------- 111
               + L G  G GK+ L +   ++  +S   S    S +  +      +          
Sbjct: 175 GFNPLFLYGGVGLGKTHLMHAIGAELIQSGNVSVAYMSAEKFMYRFIAAIRSQSTIEFKE 234

Query: 112 --------LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                   +++D+  L   D    + FH  N++      ++++A   P         L +
Sbjct: 235 QLRSVDVLMIDDLQFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRT 294

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           RL    V  I     +    ++    A   + +  K+  ++  ++  ++   E  ++++ 
Sbjct: 295 RLGCGMVADIHATTFELRISILESKAAASGVVVPGKVLEFLAHKITSNVRELEGALNRLI 354

Query: 221 NLALSRGMGITRSLAAEVLKETQQC 245
             A   G  +T     EVL +  + 
Sbjct: 355 AHANLFGRPVTLEATQEVLHDILKA 379


>gi|310286521|ref|YP_003937779.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           bifidum S17]
 gi|309250457|gb|ADO52205.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           bifidum S17]
          Length = 529

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 31/233 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKSRS 90
            D  +   +   A  +  +           + + G SG GK+ L N         D +  
Sbjct: 192 FDTFVPGDSNRFARTVALAVAEGTGQEFNPLCIYGGSGLGKTHLLNAIGNYALVKDPTLK 251

Query: 91  TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128
            R+ N  +  +  +   + P                   +L++DI  L   +  L   FH
Sbjct: 252 VRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 311

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++HQ +  +++ +   P +       L SR  +   V +  PD +    ++  M + 
Sbjct: 312 TFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASM 371

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                   +   I +R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 372 NGTSTPNDVLNLIAERFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424


>gi|300702375|ref|YP_003743975.1| chromosomal replication initiator protein DnaA [Ralstonia
           solanacearum CFBP2957]
 gi|299070036|emb|CBJ41321.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Ralstonia solanacearum
           CFBP2957]
          Length = 525

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
              ++ D+L+   A + A        + P +    + L G  G GK+ L +   +     
Sbjct: 191 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 250

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128
             ++R           D +    RK              +L++DI           + F+
Sbjct: 251 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 310

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    +++K    
Sbjct: 311 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 370

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + +++A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 371 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 424


>gi|260909520|ref|ZP_05916223.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636368|gb|EEX54355.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 469

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 91/261 (34%), Gaps = 31/261 (11%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVIL 69
            KQK ++   KE++L          +  + +   + + +    + + +   +     + +
Sbjct: 113 AKQKTEEEPAKEQEL--DPQLNPHQTFSNYIEGDSNKLSRSVGLSIAEHPNTNQFNPMFI 170

Query: 70  VGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTR 108
            GPSG GK+ L                     A+++  +  +    N           T 
Sbjct: 171 YGPSGCGKTHLVNAIGVQTKQLYPQKRVLYISAHLFQVQFVNAVLKNATNDF-IKFYQTI 229

Query: 109 KPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             ++++D+      D      FHI N + +    +++ +   PV        L +R    
Sbjct: 230 DMLIVDDVQTWASADKTQETFFHIFNHLFRNGKRIILASDRPPVELNDMSDRLITRFSCG 289

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            + ++  P+      ++        + I  ++  +I +    S+   E +++ +   ++ 
Sbjct: 290 IIAELEKPNVQLCVDILNAKIRRDGLKIPAEVTQFIAETANGSVRDLEGVINSLMAYSVV 349

Query: 226 RGMGITRSLAAEVLKETQQCD 246
               I   LA  V+K   + D
Sbjct: 350 YNSDIDMRLAERVIKRAVKID 370


>gi|258542326|ref|YP_003187759.1| chromosomal replication initiator protein DnaA [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633404|dbj|BAH99379.1| chromosomal replication initiator protein DnaA [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636463|dbj|BAI02432.1| chromosomal replication initiator protein DnaA [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639516|dbj|BAI05478.1| chromosomal replication initiator protein DnaA [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642572|dbj|BAI08527.1| chromosomal replication initiator protein DnaA [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645627|dbj|BAI11575.1| chromosomal replication initiator protein DnaA [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648680|dbj|BAI14621.1| chromosomal replication initiator protein DnaA [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651733|dbj|BAI17667.1| chromosomal replication initiator protein DnaA [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654724|dbj|BAI20651.1| chromosomal replication initiator protein DnaA [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 477

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 86/261 (32%), Gaps = 28/261 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSF--PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           P +++         ++            + D  +V    E A          PS V    
Sbjct: 119 PAQEEATPAARTAPEVRSDLVTALDSRFTFDTFVVGKPNEFAYACARRVAEKPSSVGFNP 178

Query: 67  VILVGPSGSGKSCLANIW-SDKSRSTRFSNIAKSLDSILIDTRKPV-------------- 111
           + L G  G GK+ L +   ++  +S   S    S +  +      +              
Sbjct: 179 LFLYGGVGLGKTHLMHAIGAELIQSGNVSVAYMSAEKFMYRFIAAIRSQSTIEFKEQLRS 238

Query: 112 ----LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
               +++D+  L   D    + FH  N++      ++++A   P         L +RL  
Sbjct: 239 VDVLMIDDLQFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGC 298

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             V  I     +    ++    A   + +  K+  ++  ++  ++   E  ++++   A 
Sbjct: 299 GMVADIHATTFELRISILESKAAASGVVVPGKVLEFLAHKITSNVRELEGALNRLIAHAN 358

Query: 225 SRGMGITRSLAAEVLKETQQC 245
             G  +T     EVL +  + 
Sbjct: 359 LFGRPVTLEATQEVLHDILKA 379


>gi|224283952|ref|ZP_03647274.1| ATPase for DNA replication initiation [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313141104|ref|ZP_07803297.1| chromosomal replication initiator protein dnaA [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313133614|gb|EFR51231.1| chromosomal replication initiator protein dnaA [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 529

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 31/233 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKSRS 90
            D  +   +   A  +  +           + + G SG GK+ L N         D +  
Sbjct: 192 FDTFVPGDSNRFARTVALAVAEGTGQEFNPLCIYGGSGLGKTHLLNAIGNYALVKDPTLK 251

Query: 91  TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128
            R+ N  +  +  +   + P                   +L++DI  L   +  L   FH
Sbjct: 252 VRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 311

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++HQ +  +++ +   P +       L SR  +   V +  PD +    ++  M + 
Sbjct: 312 TFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASM 371

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                   +   I +R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 372 NGTSTPNDVLNLIAERFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424


>gi|163733262|ref|ZP_02140706.1| chromosomal replication initiation protein [Roseobacter litoralis
           Och 149]
 gi|161393797|gb|EDQ18122.1| chromosomal replication initiation protein [Roseobacter litoralis
           Och 149]
          Length = 454

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 86/260 (33%), Gaps = 32/260 (12%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPS 73
           +   PK     L  + P     + D+ +V    E A                 + L G  
Sbjct: 98  RGAAPKTPRSGLSTA-PLDARFTFDNFIVGKPNELAHAAAKRVAEGGPVTFNPLFLYGGV 156

Query: 74  GSGKSCLANIWSDKSRSTR--FSNIAKSLDS------------------ILIDTRKPVLL 113
           G GK+ L +  +   R  R   + +  S +                    +  +   +++
Sbjct: 157 GLGKTHLMHAIAHDLRLRRPEINVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMV 216

Query: 114 EDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +D+  +        + FH  N++   +  ++++    P         + SRL+   VV +
Sbjct: 217 DDVQFIAGKGSTQEEFFHTFNALVDQNKQIIISGDRAPGEIKDMEERVKSRLQCGLVVDL 276

Query: 171 SLPDDDFLEKVIV-KMFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              D +    ++  K+   R     + I   +  ++  R+  ++   E  + ++   A  
Sbjct: 277 HPTDYELRLGILQSKVEQQRKNYPGLDISDGVLEFLAHRISTNVRVLEGALTRLCAFASL 336

Query: 226 RGMGITRSLAAEVLKETQQC 245
            G  I   L  + L +  + 
Sbjct: 337 VGREIDMELTQDCLSDVLRA 356


>gi|241661626|ref|YP_002979986.1| chromosomal replication initiation protein [Ralstonia pickettii
           12D]
 gi|240863653|gb|ACS61314.1| chromosomal replication initiator protein DnaA [Ralstonia pickettii
           12D]
          Length = 529

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-------K 87
           ++ D+ +   A + A        + P +    + L G  G GK+ L +   +       +
Sbjct: 198 LTFDNFVTGKANQLARAAAIQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLMENPR 257

Query: 88  SRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFHIIN 131
           +R           D +    RK              +L++DI           + F+   
Sbjct: 258 ARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 317

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++    + +++T+ T+P         L SR  +   V I  P+ +    +++K      +
Sbjct: 318 ALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQAENV 377

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            + +++A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 378 TVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 428


>gi|320531085|ref|ZP_08032114.1| replication initiator protein DnaA [Selenomonas artemidis F0399]
 gi|320136667|gb|EFW28620.1| replication initiator protein DnaA [Selenomonas artemidis F0399]
          Length = 487

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 27/223 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP----SRVVILVGPSGSGKSCLANIWSDKSRS 90
               + D  +   + + +  +  S    P    +  + + G  G GK+ L +    K  +
Sbjct: 151 NPKYTFDAFVTGRSNQFSYAMAKSVAEAPGLPSNNPLFIYGGVGLGKTHLMHAVGHKILA 210

Query: 91  TR-----------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFN---DTQLF 127
                               S I K       +    +   L++DI           + F
Sbjct: 211 DHPDKRVLYIASMDFTNEFISAIGKKNTDEFREKYYAIDVLLIDDIQFFSGQLQTQAEFF 270

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            + N +      ++MT    P         L SR     VV I  P+ +    ++ K   
Sbjct: 271 QMFNKLRDSGRQIIMTCDRQPQEVKGLEDRLISRFSGGVVVDIQPPEFETRMAILQKKAQ 330

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             +I I   +  YI  R++ ++   E  + ++   A +  + I
Sbjct: 331 SEEIDIPGDVMTYIASRVDSNIRELEGALTRLIKYASTMRLPI 373


>gi|281411445|ref|YP_003345524.1| chromosomal replication initiator protein DnaA [Thermotoga
           naphthophila RKU-10]
 gi|281372548|gb|ADA66110.1| chromosomal replication initiator protein DnaA [Thermotoga
           naphthophila RKU-10]
          Length = 440

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 26/235 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN-------- 82
           P     + ++ +V      A          P R   + + G  G GK+ L          
Sbjct: 97  PLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ 156

Query: 83  ---------IWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL---DFNDTQL 126
                    I S+K  +    ++ +   +   +  +     +L++D+  L       T+L
Sbjct: 157 NEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTEL 216

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N +H     +++ +   P         L SR +   V K+  PD++  + +  KM 
Sbjct: 217 FHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKNIARKML 276

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                 + +++  ++ + ++ +L      + K+     + G  I    A  +LK+
Sbjct: 277 EIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEIDLKEAILLLKD 331


>gi|297380624|gb|ADI35511.1| chromosomal replication initiator protein DnaA [Helicobacter pylori
           v225d]
          Length = 455

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 85/235 (36%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKRVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K++  A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKINVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|322378946|ref|ZP_08053360.1| chromosomal replication initiation protein [Helicobacter suis HS1]
 gi|322379800|ref|ZP_08054097.1| chromosomal replication initiation protein [Helicobacter suis HS5]
 gi|321147768|gb|EFX42371.1| chromosomal replication initiation protein [Helicobacter suis HS5]
 gi|321148622|gb|EFX43108.1| chromosomal replication initiation protein [Helicobacter suis HS1]
          Length = 433

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 23/231 (9%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
               + D L+V S    A+++       S     V+  G  G GK+ + N   +K+    
Sbjct: 99  NPAFTFDTLVVGSCNHLAIKVASQVAQNSGSYNPVLFFGGVGLGKTHILNAIGNKACDRL 158

Query: 93  FSNIAKSLDSILID------------------TRKPVLLEDIDLLDFND---TQLFHIIN 131
              +  + +  L D                  TR  +L++D+           + FH  N
Sbjct: 159 QDVLYVTAEQFLNDYVFRLGNHSMDKFQDKYRTRDYLLIDDVQFFGGKQMVQEEFFHTFN 218

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++H   S ++MT+   P         L SR +   +  I  P  +    +I +      I
Sbjct: 219 ALHSQGSQIVMTSDKPPRDIKGLADRLLSRFEMGMIASIQPPKLETKIAIINQKCQFNHI 278

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +D  +  Y+      ++   E  + +++  A+  G+ I  SL   VLK+T
Sbjct: 279 RMDAPVVEYLASHTNENIRQIEGALLRLNATAMLTGVSIDLSLVEAVLKDT 329


>gi|16330393|ref|NP_441121.1| chromosomal replication initiation protein [Synechocystis sp. PCC
           6803]
 gi|2506358|sp|P49995|DNAA_SYNY3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|1652883|dbj|BAA17801.1| chromosomal replication initiator protein; DnaA [Synechocystis sp.
           PCC 6803]
          Length = 447

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 28/231 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KS 88
             +    +V      A     +    P R    + L G  G GK+ L    +        
Sbjct: 110 KYTFSRFVVGPTNRMAHAASLAVAESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLEMYP 169

Query: 89  RSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFHII 130
            +  +    +   + LI                    +L++DI  +   +    + FH  
Sbjct: 170 NAKVYYVSTERFTNDLITAIRQDNMEDFRSYYRSADFLLIDDIQFIKGKEYTQEEFFHTF 229

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           NS+H+    +++ +   P         L SR     +  I +PD +    ++ K     +
Sbjct: 230 NSLHEAGKQVVVASDRAPQRIPGLQDRLISRFSMGLIADIQVPDLETRMAILQKKAEYDR 289

Query: 191 IFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLK 240
           I + K++  YI      ++   E  L+  +   +LS  + +T    A VL 
Sbjct: 290 IRLPKEVIEYIASHYTSNIRELEGALIRAIAYTSLSN-VAMTVENIAPVLN 339


>gi|134093295|ref|YP_001098370.1| chromosomal replication initiation protein [Herminiimonas
           arsenicoxydans]
 gi|166214675|sp|A4G154|DNAA_HERAR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|133737198|emb|CAL60241.1| Chromosomal replication initiator protein DnaA [Herminiimonas
           arsenicoxydans]
          Length = 460

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 91/257 (35%), Gaps = 32/257 (12%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68
           +P    +  P+  + ++         ++ D  +   A + A        + P      + 
Sbjct: 109 IPSNATDHTPRRDQSRI------NTALTFDSFVTGKANQLARAAAIQVANNPGSSYNPLF 162

Query: 69  LVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILID--------------TR 108
           L G  G GK+ L +   ++  +       R+ +  + +  ++                + 
Sbjct: 163 LYGGVGLGKTHLIHAIGNQVLADNPNVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSL 222

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI           + F+   ++      +++T+ T+P         L SR  + 
Sbjct: 223 DLLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSG 282

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             V +  P+ +    +++K      +     +A ++ + +  ++   E  + K+   +  
Sbjct: 283 LTVAVEPPELEMRVAILLKKAVQEGVTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRF 342

Query: 226 RGMGITRSLAAEVLKET 242
            G  IT  +  + LK+ 
Sbjct: 343 HGKDITIEVVKDALKDL 359


>gi|148543244|ref|YP_001270614.1| chromosomal replication initiation protein [Lactobacillus reuteri
           DSM 20016]
 gi|184152656|ref|YP_001840997.1| chromosomal replication initiation protein [Lactobacillus reuteri
           JCM 1112]
 gi|227364307|ref|ZP_03848400.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri MM2-3]
 gi|325683506|ref|ZP_08163022.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus
           reuteri MM4-1A]
 gi|167016901|sp|A5VHF3|DNAA_LACRD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735822|sp|B2G4Y5|DNAA_LACRJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|148530278|gb|ABQ82277.1| chromosomal replication initiator protein DnaA [Lactobacillus
           reuteri DSM 20016]
 gi|183224000|dbj|BAG24517.1| chromosomal replication initiator protein DnaA [Lactobacillus
           reuteri JCM 1112]
 gi|227070620|gb|EEI08950.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri MM2-3]
 gi|324977856|gb|EGC14807.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus
           reuteri MM4-1A]
          Length = 440

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 31/262 (11%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F   +K+  D P    E      P     +    +V    + A     +    P  +   
Sbjct: 84  FTYTNKKTEDDPTPSFE---MDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLYNP 140

Query: 67  VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109
           + + G  G GK+ L                     S+   +   + I  +    L +  +
Sbjct: 141 LFIYGGVGLGKTHLMEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYR 200

Query: 110 ---PVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRL 162
               +L++DI  L        + F+  N++H     ++MT+   P      L D L SR 
Sbjct: 201 NLDLLLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIP-ELQDRLVSRF 259

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    V+I+ PD +    ++     +  I I      YI  +++ ++   E  + K+   
Sbjct: 260 RWGLTVEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAF 319

Query: 223 ALSRGMGITRSLAAEVLKETQQ 244
           A   G  IT SLA++ LK   +
Sbjct: 320 ANLSGERITPSLASQALKGLHR 341


>gi|311063460|ref|YP_003970185.1| Chromosomal replication initiator protein DnaA [Bifidobacterium
           bifidum PRL2010]
 gi|310865779|gb|ADP35148.1| Chromosomal replication initiator protein DnaA [Bifidobacterium
           bifidum PRL2010]
          Length = 529

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 31/233 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKSRS 90
            D  +   +   A  +  +           + + G SG GK+ L N         D +  
Sbjct: 192 FDTFVPGDSNRFARTVALAVAEGTGQEFNPLCIYGGSGLGKTHLLNAIGNYALVKDPTLK 251

Query: 91  TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128
            R+ N  +  +  +   + P                   +L++DI  L   +  L   FH
Sbjct: 252 VRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 311

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++HQ +  +++ +   P +       L SR  +   V +  PD +    ++  M + 
Sbjct: 312 TFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASM 371

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                   +   I +R   ++   E  + ++  +A      +TR+LA + L++
Sbjct: 372 NGTSTPNDVLNLIAERFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424


>gi|317050200|ref|YP_004111316.1| chromosomal replication initiator protein DnaA [Desulfurispirillum
           indicum S5]
 gi|316945284|gb|ADU64760.1| chromosomal replication initiator protein DnaA [Desulfurispirillum
           indicum S5]
          Length = 460

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 16  QKNDQPKNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILV 70
           Q    P  ++E+L              D  +V S+ + A     +  + P      + + 
Sbjct: 104 QTTPSPTQQKEKLHSDVRHILSPRYIFDSFVVGSSNQFAHAAAMAVANGPGVTYNPLFIY 163

Query: 71  GPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK---------------P 110
           G  G GK+ L       I+ D   +      ++   + +I+  K                
Sbjct: 164 GGVGLGKTHLMQAVGNAIYQDNRSAKIMYVQSEVFTNEMINALKNGKIEEFRQRYRYVDV 223

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  +   D    + FH  N++H     +++++  FP         L SR +   +
Sbjct: 224 LLIDDIQFIAGKDRTQEEFFHTFNTLHGEKKQIVLSSDKFPREIPHLEERLRSRFEWGLI 283

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD +    ++ K      +++  ++A +I + ++ ++   E  ++++   A   G
Sbjct: 284 ADIQPPDLETKMAILRKKAESIDMYLPNEVALFIAKAIKHNIRELEGCLNRISAYAHLTG 343

Query: 228 MGITRSLAAEVLKE 241
           +  T  +   VLK+
Sbjct: 344 VEPTVDIIKNVLKD 357


>gi|194467403|ref|ZP_03073390.1| chromosomal replication initiator protein DnaA [Lactobacillus
           reuteri 100-23]
 gi|194454439|gb|EDX43336.1| chromosomal replication initiator protein DnaA [Lactobacillus
           reuteri 100-23]
          Length = 440

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 31/262 (11%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F   +K+  D P    E      P     +    +V    + A     +    P  +   
Sbjct: 84  FTYTNKKTEDDPTPSFE---MDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLYNP 140

Query: 67  VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109
           + + G  G GK+ L                     S+   +   + I  +    L +  +
Sbjct: 141 LFIYGGVGLGKTHLMEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYR 200

Query: 110 ---PVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRL 162
               +L++DI  L        + F+  N++H     ++MT+   P      L D L SR 
Sbjct: 201 NLDLLLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIP-ELQDRLVSRF 259

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    V+I+ PD +    ++     +  I I      YI  +++ ++   E  + K+   
Sbjct: 260 RWGLTVEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAF 319

Query: 223 ALSRGMGITRSLAAEVLKETQQ 244
           A   G  IT SLA++ LK   +
Sbjct: 320 ANLSGERITPSLASQALKGLHR 341


>gi|292669293|ref|ZP_06602719.1| ATPase [Selenomonas noxia ATCC 43541]
 gi|292649134|gb|EFF67106.1| ATPase [Selenomonas noxia ATCC 43541]
          Length = 478

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 82/261 (31%), Gaps = 43/261 (16%)

Query: 13  PDKQKNDQPKNKEEQLFFSFP----------------RCLGISRDDLLVHSAIEQAVRLI 56
           P K++  Q  +   Q                           + D  +   + +    + 
Sbjct: 104 PTKEEPKQSADTPAQGSLPLTPTPSDTHAAAPDDATTLNPKYTFDAFVTGRSNQFPYAMA 163

Query: 57  DSWPSWPS----RVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT 107
            +    P       + + G  G GK+ L +     I +D          +    +  I +
Sbjct: 164 KAVADAPGLPSHNPLFIYGGVGLGKTHLMHAVGHKILADHPDRRVLYIASTDFTNEFIRS 223

Query: 108 RK---------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPV 149
            +                +L++DI      +   T+ F   N +    S +++T+   P 
Sbjct: 224 IREKNMDAFREKYYSIDVLLIDDIQFFAGQEQTQTEFFQTFNKLRDNGSQIILTSDRQPQ 283

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
                   L SR      V I  P+ +    ++ K     ++ I + +  YI  R++ ++
Sbjct: 284 DVKGLEDRLISRFAGGAPVDIQPPEFETRVAILQKKAQSEEVDIPEDVVTYIASRVDSNI 343

Query: 210 VFAEKLVDKMDNLALSRGMGI 230
              E  + ++   A +  M I
Sbjct: 344 RELEGALTRLIKYASTMRMPI 364


>gi|227543719|ref|ZP_03973768.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri CF48-3A]
 gi|300908784|ref|ZP_07126247.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri SD2112]
 gi|154705516|gb|ABS84184.1| chromosomal replication initiator protein DnaA [Lactobacillus
           reuteri]
 gi|227186287|gb|EEI66358.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri CF48-3A]
 gi|300894191|gb|EFK87549.1| DNA-directed DNA replication initiator protein [Lactobacillus
           reuteri SD2112]
          Length = 440

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 31/262 (11%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F   +K+  D P    E      P     +    +V    + A     +    P  +   
Sbjct: 84  FTYTNKKTEDDPTPSFE---MDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLYNP 140

Query: 67  VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109
           + + G  G GK+ L                     S+   +   + I  +    L +  +
Sbjct: 141 LFIYGGVGLGKTHLMEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYR 200

Query: 110 ---PVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRL 162
               +L++DI  L        + F+  N++H     ++MT+   P      L D L SR 
Sbjct: 201 NLDLLLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIP-ELQDRLVSRF 259

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    V+I+ PD +    ++     +  I I      YI  +++ ++   E  + K+   
Sbjct: 260 RWGLTVEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAF 319

Query: 223 ALSRGMGITRSLAAEVLKETQQ 244
           A   G  IT SLA++ LK   +
Sbjct: 320 ANLSGERITPSLASQALKGLHR 341


>gi|322513485|ref|ZP_08066595.1| ribosomal subunit interface protein [Actinobacillus ureae ATCC
           25976]
 gi|322120704|gb|EFX92588.1| ribosomal subunit interface protein [Actinobacillus ureae ATCC
           25976]
          Length = 447

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85
           F       ++ ++ +   + + A  +       P         L G +G GK+ L +   
Sbjct: 107 FRTGLNESLTFENFVQGKSNQLAKAVAQQIADNPGESHCNPFSLYGGTGLGKTHLLHAVG 166

Query: 86  D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122
           +       ++R     +     D +       +             +++DI        +
Sbjct: 167 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 226

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  NS+ + +  +++ +  FP +       + SRL       I  P+ +    ++
Sbjct: 227 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 286

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240
           +K   +R + + +++A +I Q++  ++   E  ++++  +A        IT     E LK
Sbjct: 287 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 344

Query: 241 ET 242
           + 
Sbjct: 345 DL 346


>gi|258650272|ref|YP_003199428.1| chromosomal replication initiation protein [Nakamurella
           multipartita DSM 44233]
 gi|258553497|gb|ACV76439.1| chromosomal replication initiator protein DnaA [Nakamurella
           multipartita DSM 44233]
          Length = 557

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 95/254 (37%), Gaps = 30/254 (11%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPS 73
           + DQ      Q   +       S +  ++ ++      A   +   P+     + + G S
Sbjct: 204 RRDQAPPNAAQSRLN----EKYSFETFVIGASNRFAHAAAVAVAEAPAVAYNPLFIWGDS 259

Query: 74  GSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK--------------PVLL 113
           G GK+ L +     ++        R+ +  +  +  +   R                +L+
Sbjct: 260 GLGKTHLLHGIGHYAQRLFPGMRVRYVSSEEFTNDFINSLRDDRKVAFQRRYRDVDVLLV 319

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  L+  +    + FH  N+++  +  +++++   P         + +R +   +  I
Sbjct: 320 DDIQFLEGKEGTQEEFFHTFNTLYNANKQIVISSDRPPKRLETLEDRMRTRFEWGLITDI 379

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             P+ +    ++ K  A  ++     +  +I  R+ER++   E  + ++   A      +
Sbjct: 380 QPPELETRIAILRKKAALDRMNAPDDVLEFIASRIERNIRELEGALIRVTAFASLNKQAV 439

Query: 231 TRSLAAEVLKETQQ 244
             +LA  VL++  +
Sbjct: 440 DLALAQIVLRDLVR 453


>gi|302535573|ref|ZP_07287915.1| chromosomal replication initiator protein DnaA [Streptomyces sp. C]
 gi|302444468|gb|EFL16284.1| chromosomal replication initiator protein DnaA [Streptomyces sp. C]
          Length = 599

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 261 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYARSL 320

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 321 YPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYREMDILLVDDIQFLASKESTQEEFFH 380

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 381 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 439

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L  +VLK  
Sbjct: 440 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEDVLKNL 494


>gi|294630338|ref|ZP_06708898.1| chromosomal replication initiator protein DnaA [Streptomyces sp.
           e14]
 gi|292833671|gb|EFF92020.1| chromosomal replication initiator protein DnaA [Streptomyces sp.
           e14]
          Length = 643

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 305 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 364

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 365 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 424

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 425 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 483

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 484 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 538


>gi|116628684|ref|YP_813856.1| DNA replication ATPase initiation [Lactobacillus gasseri ATCC
           33323]
 gi|116094266|gb|ABJ59418.1| DNA replication ATPase initiation [Lactobacillus gasseri ATCC
           33323]
          Length = 464

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 88/265 (33%), Gaps = 35/265 (13%)

Query: 13  PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           P++    +P+ K  Q                    + D  +     + A     +    P
Sbjct: 98  PERLVTPKPRIKTNQEILEDRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 157

Query: 64  SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109
                 + + G  G GK+ L         ++K  +      +++  +  I++ K      
Sbjct: 158 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAE 217

Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     +L++DI      +    + FH   +++     ++MT+   P         
Sbjct: 218 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 277

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      V+I+ PD +    ++ K      + ID     YI  +++ ++   E  + 
Sbjct: 278 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGALV 337

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
           K+   A      I   LA E L + 
Sbjct: 338 KVQAHATIEREDINVDLAKEALADL 362


>gi|170287808|ref|YP_001738046.1| chromosomal replication initiator protein DnaA [Thermotoga sp. RQ2]
 gi|226735861|sp|B1LC08|DNAA_THESQ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|170175311|gb|ACB08363.1| chromosomal replication initiator protein DnaA [Thermotoga sp. RQ2]
          Length = 440

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 85/235 (36%), Gaps = 26/235 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN-------- 82
           P     + ++ +V      A          P R   + + G  G GK+ L          
Sbjct: 97  PLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ 156

Query: 83  ---------IWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL---DFNDTQL 126
                    I S+K  +    ++ +   +   +  +     +L++D+  L       T+L
Sbjct: 157 NEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTEL 216

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N +H     +++ +   P         L SR +   V K+  PD++  + +  KM 
Sbjct: 217 FHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML 276

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                 + +++  ++ + ++ +L      + K+     + G  +    A  +LK+
Sbjct: 277 EIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331


>gi|15643688|ref|NP_228734.1| chromosomal replication initiation protein [Thermotoga maritima
           MSB8]
 gi|1169366|sp|P46798|DNAA_THEMA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|168177182|pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
           Maritima Replication Initiation Protein Dnaa
 gi|168177183|pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
           Maritima Replication Initiation Protein Dnaa
 gi|168177184|pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
           Maritima Replication Initiation Protein Dnaa
 gi|168177185|pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
           Maritima Replication Initiation Protein Dnaa
 gi|4981463|gb|AAD36007.1|AE001756_10 chromosomal replication initiator protein [Thermotoga maritima
           MSB8]
 gi|780792|gb|AAA65438.1| DnaA [Thermotoga maritima MSB8]
          Length = 440

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 85/235 (36%), Gaps = 26/235 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN-------- 82
           P     + ++ +V      A          P R   + + G  G GK+ L          
Sbjct: 97  PLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ 156

Query: 83  ---------IWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL---DFNDTQL 126
                    I S+K  +    ++ +   +   +  +     +L++D+  L       T+L
Sbjct: 157 NEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTEL 216

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N +H     +++ +   P         L SR +   V K+  PD++  + +  KM 
Sbjct: 217 FHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML 276

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                 + +++  ++ + ++ +L      + K+     + G  +    A  +LK+
Sbjct: 277 EIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331


>gi|222150251|ref|YP_002559404.1| chromosomal replication initiation protein DnaA [Macrococcus
           caseolyticus JCSC5402]
 gi|254777906|sp|B9E8Z7|DNAA_MACCJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|222119373|dbj|BAH16708.1| chromosomal replication initiation protein DnaA [Macrococcus
           caseolyticus JCSC5402]
          Length = 445

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 91/256 (35%), Gaps = 28/256 (10%)

Query: 14  DKQKNDQPKNKEE--QLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVI 68
           + +K    +  ++  Q           + D  ++ S       A   +   P+     + 
Sbjct: 87  NNEKEAPVRKTQQTSQELLPNQLNTDNTFDTFVIGSGNRFSHAASLAVAEAPAKAYNPLF 146

Query: 69  LVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK-------------- 109
           + G  G GK+ L +         K  +      ++   +  I++ K              
Sbjct: 147 IYGGVGLGKTHLMHAIGHYVMEHKENAKVVYISSEKFMNEFINSIKDNKTEEFRSKYRNV 206

Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI  L   +    + FH  N +HQ    +++++   P         L +R +  
Sbjct: 207 DVLLIDDIQFLAGKESTQEEFFHTFNELHQNHKQIVISSDRAPKEIPTLEERLRTRFEWG 266

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  ++ PD +    ++ K   +  I I  +   YI  +++ ++   E  + ++   +  
Sbjct: 267 LITDVTPPDLETRIAILRKKSEEENIDIPNEAMLYIATQIQSNIRELEGALTRVSAYSKL 326

Query: 226 RGMGITRSLAAEVLKE 241
               +   L AE LK+
Sbjct: 327 VNRELNSDLVAEALKD 342


>gi|288959510|ref|YP_003449851.1| chromosomal replication initiator protein [Azospirillum sp. B510]
 gi|288911818|dbj|BAI73307.1| chromosomal replication initiator protein [Azospirillum sp. B510]
          Length = 505

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 79/238 (33%), Gaps = 26/238 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI--WSDKSR 89
               + ++ +V    E A           +     + L G  G GK+ L +   W  +  
Sbjct: 171 DPRFTFENFVVGKPNELAHAAARRVADATAVTFNPLFLYGGVGLGKTHLMHALAWQIRKN 230

Query: 90  STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
                 +  S +  +    + +                  +++D+  +   D    + FH
Sbjct: 231 DPNRKVLYLSAEKFMYQFIRALRFKDTMAFKQQFRSVDVLMIDDVQFISGKDSTQEEFFH 290

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++   +  ++++A   P         L SRL    V  I     +    ++      
Sbjct: 291 TFNALVDQNRQVIISADKSPSDLEGMEERLRSRLGWGLVADIHPTTYELRLGILQAKADA 350

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            Q  I  K+  ++  ++  ++   E  ++++   A   G  I+     EVL +  + +
Sbjct: 351 LQATIPLKVLEFLAHKITSNVRELEGALNRIVAHAELVGRSISLETTQEVLHDLLRAN 408


>gi|17548159|ref|NP_521561.1| chromosomal replication initiation protein [Ralstonia solanacearum
           GMI1000]
 gi|38257696|sp|Q8XTV4|DNAA_RALSO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|17430466|emb|CAD16939.1| probable chromosomal replication initiator protein dnaa [Ralstonia
           solanacearum GMI1000]
          Length = 522

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
              ++ D+L+   A + A        + P +    + L G  G GK+ L +   +     
Sbjct: 188 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 247

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128
             ++R           D +    RK              +L++DI           + F+
Sbjct: 248 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 307

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    +++K    
Sbjct: 308 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 367

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + +++A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 368 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 421


>gi|260593160|ref|ZP_05858618.1| DNA replication initiator protein, ATPase [Prevotella veroralis
           F0319]
 gi|260534868|gb|EEX17485.1| DNA replication initiator protein, ATPase [Prevotella veroralis
           F0319]
          Length = 468

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 83/254 (32%), Gaps = 35/254 (13%)

Query: 21  PKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSG 76
           P++ + QL          S  + +   +        + + +   +     + + GPSG G
Sbjct: 123 PQDLDSQL------DPHKSFTNYIEGDSNKLPRSIGLSIAEHPSTTQFNPMFIYGPSGCG 176

Query: 77  KSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
           K+ L                     A ++  +   +   N           T   ++++D
Sbjct: 177 KTHLVNAIGLKVKQLYPEKRVLYVSARLFQVQYTDSVRQNTTNDF-INFYQTIDVLIVDD 235

Query: 116 ID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I             FHI N + +    +++ +   PV        L +R     + ++  
Sbjct: 236 IQEWITATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEK 295

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+      ++        + I + +  +I +    S+   + +++ +   ++     +  
Sbjct: 296 PNVQLCVDILHNKIKRDGLSIPEDVIKFIAETANGSVRDLQGVINSLLAYSVVYNSNVDM 355

Query: 233 SLAAEVLKETQQCD 246
            LA  V+K   + D
Sbjct: 356 RLAERVIKRAVKID 369


>gi|253997714|ref|YP_003049777.1| chromosomal replication initiator protein DnaA [Methylovorus sp.
           SIP3-4]
 gi|253984393|gb|ACT49250.1| chromosomal replication initiator protein DnaA [Methylovorus sp.
           SIP3-4]
          Length = 469

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD----- 86
               + D+ +   A + A          P      + + G  G GK+ L     +     
Sbjct: 135 NSAFNFDNFVTGRANQLARAAALQVAENPGTAYNPLFIYGGVGLGKTHLLQAIGNHLKMN 194

Query: 87  --------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFH 128
                          S++ K+ +    D       +   +L++DI           + F+
Sbjct: 195 RPDAKIRYLHAERYVSDVVKAYELKAFDEFKRQYHSLDLLLIDDIQFFAKKSRTQEEFFY 254

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS+ +    +++T  T+P         L +R      V +  P+ +    +++K   +
Sbjct: 255 AFNSLIEAKKQIIITCDTYPKEIVDVDERLRTRFSWGLTVAVEPPELEMRVAILLKKAEE 314

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +  + + +A +I +++  S+   E  ++++  +A   G  I   LA + LK+ 
Sbjct: 315 AKFVLHEDVAFFIAKQVRSSVRELEGALNRIVAMANFTGNPIDVHLAKDALKDL 368


>gi|17229501|ref|NP_486049.1| chromosomal replication initiation protein [Nostoc sp. PCC 7120]
 gi|38257719|sp|Q8YVG9|DNAA_NOSS1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|17131099|dbj|BAB73708.1| chromosomal replication initiator protein [Nostoc sp. PCC 7120]
          Length = 459

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 36/247 (14%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSC 79
           N+  Q           SR   +V +    A     +    P R    + L G  G GK+ 
Sbjct: 110 NQNRQPNTELNAKYVFSR--FVVGANNRMAHAASLAVAESPGREFNPLFLCGGVGLGKTH 167

Query: 80  LANI-----WSDKSRSTRFSNIAKSLDSILI---------------DTRKPVLLEDIDLL 119
           L        W     S  F    +   + LI                    +L++DI  +
Sbjct: 168 LMQAIGHYRWEICPNSKIFYVSTEQFTNDLITAIRNDSMQSFREHYRAADVLLVDDIQFI 227

Query: 120 DFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           +  +    + FH  N++H+    +++ +   P         LCSR     +  I  PD +
Sbjct: 228 EGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSMGLIADIQAPDLE 287

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR----GMGITR 232
               ++ K     +I + + +  YI      ++   E  + +    AL+     G+ +T 
Sbjct: 288 TRMAILQKKSEYEKIRLPRDVIEYIATNFTSNIRELEGALTR----ALAYISIWGLPMTV 343

Query: 233 SLAAEVL 239
           +  A VL
Sbjct: 344 ANLAPVL 350


>gi|326567507|gb|EGE17622.1| DnaA family protein [Moraxella catarrhalis BC1]
          Length = 254

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 18/227 (7%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
            +  Q   +       S +D    S+    +  ID       R + +VG SG GK+ LA+
Sbjct: 2   TQAIQDSLNLDIRPEASLEDF-QSSSYHPILDAIDKLVQGSLRELFIVGDSGFGKTHLAS 60

Query: 83  IWSDKSRS------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127
              +   S                    +   + ++    ++++D+ ++  +      LF
Sbjct: 61  AIYEHYTSMTSKMVISLNLTELIEQDPHATALVGLEMFDLIIVDDLQMVRHSYEWQEGLF 120

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD-DFLEKVIVKMF 186
           H+IN + ++   +L  A        + L DL +RL  A ++ +   DD +    +I  + 
Sbjct: 121 HLINRLREHQKQILYLADDPARELQIGLLDLHTRLSLAPMLTLPDNDDINDRRILIEVIL 180

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
             +   + +++  Y+++   R+      ++D +    L+R   +   
Sbjct: 181 KKKNWKLPEEIFDYLLEEGPRNAGDINTVLDHI-RPLLTRLSRVQIP 226


>gi|260574423|ref|ZP_05842427.1| chromosomal replication initiator protein DnaA [Rhodobacter sp.
           SW2]
 gi|259023319|gb|EEW26611.1| chromosomal replication initiator protein DnaA [Rhodobacter sp.
           SW2]
          Length = 452

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDK-- 87
           P     + D  +V    E A                 + L G  G GK+ L +  + +  
Sbjct: 111 PLDSRFTFDSFVVGKPNELAHAAARRVAEGGPVSFNPLFLYGGVGLGKTHLMHAIAHELH 170

Query: 88  SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126
            R      +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 171 VRQPHLRVLYLSAEQFMYRFVQALRERQIMDFKELFRSVDVLMVDDVQFIAGKDSTQEEF 230

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++ +  
Sbjct: 231 FHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKA 290

Query: 187 ADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                    + +   +  ++  R+  ++   E  + ++   A   G  IT  L  + L +
Sbjct: 291 EFYRGQYPGLQLADGVVEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLTQDCLAD 350

Query: 242 TQQC 245
             + 
Sbjct: 351 ILRA 354


>gi|224827186|ref|ZP_03700281.1| chromosomal replication initiator protein DnaA [Lutiella
           nitroferrum 2002]
 gi|224600579|gb|EEG06767.1| chromosomal replication initiator protein DnaA [Lutiella
           nitroferrum 2002]
          Length = 466

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 81/234 (34%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82
               + D L+           A+++ ++        + + G  G GK+ L          
Sbjct: 131 NPAFTFDTLVTGKGNQLARAAAMQIAENPGDQAYNPLFVYGGVGLGKTHLIQAIGNHVYQ 190

Query: 83  ---------IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLF 127
                    I +++  +                   +   +L++DI      +    + F
Sbjct: 191 KNPQAKIRYIHAERYVADIMRAYQHKAFDEFKRYYHSLDLLLIDDIQFFAGKNRTMEEFF 250

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++ +    ++MT  T+P         L SR      V+I  P+ +    +++K   
Sbjct: 251 YAFNALLESGKQVIMTCDTYPKQIEGMDERLISRFSWGLTVEIQPPELEMRVAILMKKAE 310

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              I +D  +A +I Q +  ++   E  + ++   A      I+  L  E LK+
Sbjct: 311 ADSIKLDHTVAFFIAQNVRSNVRELEGALKRVVAYARFTNQSISLELVKEALKD 364


>gi|315225750|ref|ZP_07867538.1| DNA-directed DNA replication initiator protein [Parascardovia
           denticolens DSM 10105]
 gi|315119882|gb|EFT83014.1| DNA-directed DNA replication initiator protein [Parascardovia
           denticolens DSM 10105]
          Length = 613

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 84/243 (34%), Gaps = 31/243 (12%)

Query: 35  CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------ 84
               + D  +  ++       AV + +S  +     + + G SG GK+ L N        
Sbjct: 268 NPFATFDTFVQGTSNRFAKSAAVMVAESPGTVDYNPLFIYGESGLGKTHLLNAIGNYVLR 327

Query: 85  -----------SDKSRSTRFSNIAKSLDSILIDTR--------KPVLLEDIDLLDFND-- 123
                      +++  +   S +A                     +LL+DI     ++  
Sbjct: 328 QDPTMIVRYVTAEEFVNDFVSALAAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETM 387

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            Q FH  N +      +++ +   P         L +R     VV ++ P+ D    ++ 
Sbjct: 388 EQFFHTFNELVSTGKQIVIASDVAPNHLKGFNERLRTRFNNGLVVDVAPPEKDTRLAILR 447

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
              ++  I +   +  YI  ++  S+   E  + ++  +A      +T SLA + L +  
Sbjct: 448 LKASNSNIEVPADVLDYIADKITDSVRELEGALTRVTAIATLNNQPVTHSLAEQTLHDFF 507

Query: 244 QCD 246
             D
Sbjct: 508 NSD 510


>gi|118578450|ref|YP_899700.1| chromosomal replication initiation protein [Pelobacter propionicus
           DSM 2379]
 gi|166214687|sp|A1AJX2|DNAA_PELPD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|118501160|gb|ABK97642.1| chromosomal replication initiator protein DnaA [Pelobacter
           propionicus DSM 2379]
          Length = 450

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPV------------- 111
           + + G  G GKS L N      +S S   S    S +  + +    +             
Sbjct: 151 LFIYGGVGLGKSHLLNAIGHTIRSSSPNLSVCYCSAEKFMYEMVNALRQKRMDQFRSRFR 210

Query: 112 -----LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
                L++DI  +        + FH  N+++     +++T+  FP         L SR +
Sbjct: 211 NLDVLLVDDIQFISGKVGTQEEFFHTFNALYDMQKQIVITSDKFPREISDLEERLRSRFE 270

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              +  I  PD +    ++ K     +I + + +  ++     R++   E ++ ++   +
Sbjct: 271 WGLIADIQPPDLETKIAILKKKSEITRIQLPEDVIYFLASSDTRNIRELEGMLIRLGAYS 330

Query: 224 LSRGMGITRSLAAEVLKE 241
             +G+ IT  +A E LKE
Sbjct: 331 SLQGIPITLDMARENLKE 348


>gi|259500777|ref|ZP_05743679.1| DNA-directed DNA replication initiator protein [Lactobacillus iners
           DSM 13335]
 gi|302190772|ref|ZP_07267026.1| chromosomal replication initiation protein [Lactobacillus iners
           AB-1]
 gi|259167471|gb|EEW51966.1| DNA-directed DNA replication initiator protein [Lactobacillus iners
           DSM 13335]
          Length = 453

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 91/261 (34%), Gaps = 28/261 (10%)

Query: 10  FFVPDKQKNDQP--KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66
           F V   QK  +P  +N   +           + D  +     + A     +    P    
Sbjct: 91  FVVHKTQKKQKPVIENNHNEFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY 150

Query: 67  --VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------- 109
             + + G  G GK+ L         ++K+ +      +++  +  I++ K          
Sbjct: 151 NPLFIFGGVGLGKTHLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREK 210

Query: 110 -----PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                 +L++DI      +    + FH   +++     ++MT+   P         L SR
Sbjct: 211 YRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSR 270

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                 V+I+ PD +    ++ K      + ID     Y+  +++ ++   E  + K+  
Sbjct: 271 FAWGLQVEITPPDLETRIAILRKKAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQA 330

Query: 222 LALSRGMGITRSLAAEVLKET 242
            A      I  +LA E L + 
Sbjct: 331 HATIEREDINLNLAKEALADL 351


>gi|187927113|ref|YP_001897600.1| chromosomal replication initiation protein [Ralstonia pickettii
           12J]
 gi|309780182|ref|ZP_07674933.1| bacterial DnaA protein helix-turn-helix domain protein [Ralstonia
           sp. 5_7_47FAA]
 gi|226735836|sp|B2UCF1|DNAA_RALPJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|187724003|gb|ACD25168.1| chromosomal replication initiator protein DnaA [Ralstonia pickettii
           12J]
 gi|308920885|gb|EFP66531.1| bacterial DnaA protein helix-turn-helix domain protein [Ralstonia
           sp. 5_7_47FAA]
          Length = 529

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 86/231 (37%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-------K 87
           ++ D+ +   A + A        + P +    + L G  G GK+ L +   +       +
Sbjct: 198 LTFDNFVTGKANQLARAAAIQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLMENPR 257

Query: 88  SRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFHIIN 131
           +R           D +    RK              +L++DI           + F+   
Sbjct: 258 ARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 317

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++    + +++T+ T+P         L SR  +   V I  P+ +    +++K      +
Sbjct: 318 ALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQAENV 377

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            + +++A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 378 TVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 428


>gi|329121620|ref|ZP_08250241.1| DNA-directed DNA replication initiator protein DnaA [Dialister
           micraerophilus DSM 19965]
 gi|327468775|gb|EGF14252.1| DNA-directed DNA replication initiator protein DnaA [Dialister
           micraerophilus DSM 19965]
          Length = 494

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 90/243 (37%), Gaps = 34/243 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPS--------RVVILVGPSGSGKSCLANI 83
           P     + +  +  +  E A +  +       +          + + GPSG GK+ L + 
Sbjct: 150 PINTEHTFETFVHGNCNEMAFQSALSVAQMAVNMEEMDKKMNPLFIYGPSGLGKTHLLHA 209

Query: 84  WSD--KSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDID---LLD 120
             +  +  +   S I  S ++   +    +                  L++D+      +
Sbjct: 210 ICNYIRENAPHLSYIFVSSETFTNELIASIKSNSMPKFREKYRNPDYLLIDDVQFFGSKN 269

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLE 179
            +  ++F+  N++      +++T+   P      L D + +R  +  +V IS PD +   
Sbjct: 270 SSKMEIFNTFNTLFDNKKHIILTSDRTPSDIE-ELEDRIQTRFSSGLIVPISPPDYEICS 328

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            ++ K      I I  ++  YI + +  ++   +   +K+   A  +   IT   A E L
Sbjct: 329 IILEKRAEKEGINIPSEVINYIAEHINTNVRELDGAFNKLVTYAKVKKKEITLEFAKETL 388

Query: 240 KET 242
           K+ 
Sbjct: 389 KDQ 391


>gi|229816997|ref|ZP_04447279.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM
           20098]
 gi|229785742|gb|EEP21856.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM
           20098]
          Length = 516

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 93/259 (35%), Gaps = 37/259 (14%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILV 70
              +N   ++ E  L          + D  +   +   A  +  +           + + 
Sbjct: 160 GVDRNKVQRDPETHL------NKNATFDTFVPGDSNRFARTVALAVAEGSGKDFNPLCIY 213

Query: 71  GPSGSGKSCLANIWS------DKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           G SG GK+ L N         D +   R+ N  + L+  +   + P              
Sbjct: 214 GGSGLGKTHLLNAIGNYALVKDPTLKVRYVNSEEFLNEFIEALQIPSQSQGRIAEFNRRY 273

Query: 111 -----VLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                +L++DI  L   +  L   FH  N++HQ +  +++ +   P +       L SR 
Sbjct: 274 RSVDVLLIDDIQFLGGKEATLEQFFHTFNALHQANKRIVIASDVAPKNLKGFEARLISRF 333

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            +   V +  PD +    ++  M +     I   +   I +R   ++   E  + ++  +
Sbjct: 334 DSGLTVDVKPPDLETRIAILRMMASMNHSNIPNDVLDLIAERFTENIRELEGALTRVTAV 393

Query: 223 ALSRGMGITRSLAAEVLKE 241
           A      +TR++A + L++
Sbjct: 394 ASLSNQPVTRAMAEQTLQD 412


>gi|313199778|ref|YP_004038436.1| chromosomal replication initiator protein dnaa [Methylovorus sp.
           MP688]
 gi|312439094|gb|ADQ83200.1| chromosomal replication initiator protein DnaA [Methylovorus sp.
           MP688]
          Length = 469

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD----- 86
               + D+ +   A + A          P      + + G  G GK+ L     +     
Sbjct: 135 NSAFNFDNFVTGRANQLARAAALQVAENPGTAYNPLFIYGGVGLGKTHLLQAIGNHLKMN 194

Query: 87  --------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFH 128
                          S++ K+ +    D       +   +L++DI           + F+
Sbjct: 195 RPDAKIRYLHAERYVSDVVKAYELKAFDEFKRQYHSLDLLLIDDIQFFAKKSRTQEEFFY 254

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS+ +    +++T  T+P         L +R      V +  P+ +    +++K   +
Sbjct: 255 AFNSLIEAKKQIIITCDTYPKEIVDVDERLRTRFSWGLTVAVEPPELEMRVAILLKKAEE 314

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +  + + +A +I +++  S+   E  ++++  +A   G  I   LA + LK+ 
Sbjct: 315 AKFVLHEDVAFFIAKQVRSSVRELEGALNRIVAMANFTGNPIDVHLAKDALKDL 368


>gi|254384774|ref|ZP_05000111.1| chromosomal replication initiator protein dnaA [Streptomyces sp.
           Mg1]
 gi|194343656|gb|EDX24622.1| chromosomal replication initiator protein dnaA [Streptomyces sp.
           Mg1]
          Length = 590

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 285 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 344

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 345 YPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYREMDILLVDDIQFLASKESTQEEFFH 404

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 405 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 463

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L  +VLK  
Sbjct: 464 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEDVLKNL 518


>gi|55820104|ref|YP_138546.1| chromosomal replication initiation protein [Streptococcus
           thermophilus LMG 18311]
 gi|55821994|ref|YP_140435.1| chromosomal replication initiation protein [Streptococcus
           thermophilus CNRZ1066]
 gi|116626973|ref|YP_819592.1| chromosomal replication initiation protein [Streptococcus
           thermophilus LMD-9]
 gi|71151807|sp|Q5M226|DNAA_STRT1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|71151808|sp|Q5M6L8|DNAA_STRT2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|122268421|sp|Q03N26|DNAA_STRTD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|55736089|gb|AAV59731.1| chromosomal replication initiator protein dnaA [Streptococcus
           thermophilus LMG 18311]
 gi|55737979|gb|AAV61620.1| chromosomal replication initiator protein dnaA [Streptococcus
           thermophilus CNRZ1066]
 gi|116100250|gb|ABJ65396.1| ATPase involved in DNA replication initiation [Streptococcus
           thermophilus LMD-9]
 gi|312277419|gb|ADQ62076.1| Chromosomal replication initiator protein dnaA [Streptococcus
           thermophilus ND03]
          Length = 454

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 35/262 (13%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPS 64
           P    ND    +E+Q     P          + D+ +       +V     +   P    
Sbjct: 90  PTLANNDFSNKREQQTP-DLPTLNSDLNSKYTFDNFIQGDENRWSVAASLAVADSPGATY 148

Query: 65  RVVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILID 106
             + + G  G GK+ L N   +K                              +D + + 
Sbjct: 149 NPLFIYGGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVLHIRLDKMDELKLK 208

Query: 107 TR--KPVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
            R    +L++DI  L          + F+  N +H  +  +++T+   P         L 
Sbjct: 209 YRHLDVLLIDDIQSLAKKSTQATQEEFFNTFNVLHDNNKQIVLTSDRNPDQLNEMEERLV 268

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +R K    V I+ PD +    ++     D       +   Y+  + + ++   E  +  +
Sbjct: 269 TRFKWGLTVNITPPDFETRVAILTNKIMDYDYHFPPETIEYLAGQFDSNVRDLEGALKDI 328

Query: 220 DNLALSRG-MGITRSLAAEVLK 240
             +A  R    IT  +AAE ++
Sbjct: 329 SLVANVRQLDTITVEVAAEAIR 350


>gi|312872761|ref|ZP_07732826.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LEAF 2062A-h1]
 gi|315654131|ref|ZP_07907047.1| DNA-directed DNA replication initiator protein [Lactobacillus iners
           ATCC 55195]
 gi|325913710|ref|ZP_08176072.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           UPII 60-B]
 gi|311091803|gb|EFQ50182.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LEAF 2062A-h1]
 gi|315488827|gb|EFU78473.1| DNA-directed DNA replication initiator protein [Lactobacillus iners
           ATCC 55195]
 gi|325477069|gb|EGC80219.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           UPII 60-B]
          Length = 453

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 91/261 (34%), Gaps = 28/261 (10%)

Query: 10  FFVPDKQKNDQP--KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66
           F V   QK  +P  +N   +           + D  +     + A     +    P    
Sbjct: 91  FVVHKTQKKQEPVIENNHNEFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY 150

Query: 67  --VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------- 109
             + + G  G GK+ L         ++K+ +      +++  +  I++ K          
Sbjct: 151 NPLFIFGGVGLGKTHLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREK 210

Query: 110 -----PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                 +L++DI      +    + FH   +++     ++MT+   P         L SR
Sbjct: 211 YRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSR 270

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                 V+I+ PD +    ++ K      + ID     Y+  +++ ++   E  + K+  
Sbjct: 271 FAWGLQVEITPPDLETRIAILRKKAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQA 330

Query: 222 LALSRGMGITRSLAAEVLKET 242
            A      I  +LA E L + 
Sbjct: 331 HATIEREDINLNLAKEALADL 351


>gi|284047389|ref|YP_003397728.1| chromosomal replication initiator protein DnaA [Acidaminococcus
           fermentans DSM 20731]
 gi|283951610|gb|ADB46413.1| chromosomal replication initiator protein DnaA [Acidaminococcus
           fermentans DSM 20731]
          Length = 462

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 89/254 (35%), Gaps = 27/254 (10%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGP 72
           Q   QP  K  Q  F        + D+ +   + E+A      + + P+     + L   
Sbjct: 108 QPEPQPAAKPAQ-EFDSHLSPKYTFDNFIRGKSNEEAFNFSMGVANAPAKSYNPLFLYSD 166

Query: 73  SGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---L 112
            G GK+ L N                   S+   +     I  + +    +  + +   L
Sbjct: 167 PGLGKTHLMNAIGNYIHKKFPQMKILYTSSETFTNELIGAIQHNTNEAFRNKYRNIDVLL 226

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  L   +    + FH   ++ Q D  +++++   P         L SR     +++
Sbjct: 227 IDDIQFLRKKESTQEEFFHTFEALKQADKQIIISSDRPPKELDTLEERLTSRFMQGLIIE 286

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I+ PD +    ++  M     +    ++   I   ++ ++   E    K+   A      
Sbjct: 287 INHPDFETRSAILRSMAEKDHLEFPLEVIQLIATNVKTNIRELEGAYTKVHAFANLNHQP 346

Query: 230 ITRSLAAEVLKETQ 243
           +T  LA + LK+  
Sbjct: 347 VTMELARKALKDLD 360


>gi|227487662|ref|ZP_03917978.1| chromosomal replication initiation protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092356|gb|EEI27668.1| chromosomal replication initiation protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 527

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 97/257 (37%), Gaps = 35/257 (13%)

Query: 21  PKNKEEQLFF-SFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGS 75
           P  + +Q    +       + +  ++  +       A  + +S P+     + + G SG 
Sbjct: 169 PSTQPKQAPAANSTLNPKHTFESFVIGKSNQFSQAAAFAVAES-PAEAYNPLYIWGGSGL 227

Query: 76  GKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP----------VLL 113
           GK+ L +  +  + + +                   ++S+  D ++           +++
Sbjct: 228 GKTHLLH--ATGNYALQLHPGIRVMYVSSEEFTNDYINSVRDDKQESFKHRYRNLDILMV 285

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVK 169
           +DI  L+  +    + FH  N++HQ +  +++++   P +  V L D L +R +A  +  
Sbjct: 286 DDIQFLEGKEGTQEEFFHTFNALHQANKQIILSSDRPPQNL-VTLEDRLRTRFQAGLITD 344

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  PD +    ++ K      + +D+     I      S+   E  + ++   A      
Sbjct: 345 IQPPDLETRIAILEKKAIAEHVQVDRDSLTEIATPFPGSIRSLEGALIRVTAFASLTHRQ 404

Query: 230 ITRSLAAEVLKETQQCD 246
           IT  L  E L +    +
Sbjct: 405 ITPDLVREALSDLIGTE 421


>gi|309807844|ref|ZP_07701776.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168946|gb|EFO71032.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LactinV 01V1-a]
          Length = 436

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 91/261 (34%), Gaps = 28/261 (10%)

Query: 10  FFVPDKQKNDQP--KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66
           F V   QK  +P  +N   +           + D  +     + A     +    P    
Sbjct: 91  FVVHKTQKKQEPVIENNHNEFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY 150

Query: 67  --VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------- 109
             + + G  G GK+ L         ++K+ +      +++  +  I++ K          
Sbjct: 151 NPLFIFGGVGLGKTHLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREK 210

Query: 110 -----PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                 +L++DI      +    + FH   +++     ++MT+   P         L SR
Sbjct: 211 YRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSR 270

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                 V+I+ PD +    ++ K      + ID     Y+  +++ ++   E  + K+  
Sbjct: 271 FAWGLQVEITPPDLETRIAILRKKAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQA 330

Query: 222 LALSRGMGITRSLAAEVLKET 242
            A      I  +LA E L + 
Sbjct: 331 HATIEREDINLNLAKEALADL 351


>gi|238926597|ref|ZP_04658357.1| DNA-directed DNA replication initiator protein [Selenomonas
           flueggei ATCC 43531]
 gi|238885543|gb|EEQ49181.1| DNA-directed DNA replication initiator protein [Selenomonas
           flueggei ATCC 43531]
          Length = 473

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 79/259 (30%), Gaps = 41/259 (15%)

Query: 13  PDKQKNDQPKNKEEQ--LFFSFPRCLGISRDD------------LLVHSAIEQAVRLIDS 58
           P   K    +    Q  L  + P     + DD             +   + +    +  +
Sbjct: 101 PASLKEPAEEAAPAQGSLPLTPPETHAAAPDDTTTLNPKYTFEAFVTGRSNQFPYAMAKA 160

Query: 59  WPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILID-- 106
               P       + + G  G GK+ L +    K  +        +       +  +    
Sbjct: 161 VADAPGLPSHNPLFIYGGVGLGKTHLMHAVGHKILADDPKKRVLYIASTDFTNEFIRSIR 220

Query: 107 ------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
                       +   +L++DI      +   T+ F   N +    S +++T+   P   
Sbjct: 221 EKNMDAFREKYYSIDVLLIDDIQFFAGQEQTQTEFFQTFNKLRDNGSQIILTSDRQPQDV 280

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L SR      V I  P+ +    ++ K      + I   +  YI  R++ ++  
Sbjct: 281 KGLEDRLISRFAGGAPVDIQPPEFETRVAILQKKAQSEDVDIPADVVTYIASRVDSNIRE 340

Query: 212 AEKLVDKMDNLALSRGMGI 230
            E  + ++   A +  M I
Sbjct: 341 LEGALTRLIKYASTMRMPI 359


>gi|81299909|ref|YP_400117.1| chromosomal replication initiation protein [Synechococcus elongatus
           PCC 7942]
 gi|81168790|gb|ABB57130.1| chromosomal replication initiator protein DnaA [Synechococcus
           elongatus PCC 7942]
          Length = 482

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 82/256 (32%), Gaps = 31/256 (12%)

Query: 13  PDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           P  +    P     +              SR   +V +    A     +   +P R    
Sbjct: 123 PAVEVVKPPTTTAGRPPLRSSDLNPKYVFSR--FVVGANNRMAHAASLAIAEYPGREYNP 180

Query: 67  VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT-------------- 107
           + L G  G GK+ L              +  F    +   + LI                
Sbjct: 181 LFLCGGVGLGKTHLMQAIGHYRLEIDPDAKIFYVSTEQFTNDLIAAIRRDSMQSFREHYR 240

Query: 108 -RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               ++++DI  ++  +    + F+  NS+H+    +++ +   P         L SR  
Sbjct: 241 AADVIMVDDIQFIEGKEYTQEEFFYTFNSLHEAGKQIVLASDRPPSQIPRLQERLISRFS 300

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              +  I  PD +    ++ K      + + + +  YI  R   ++   E  + +    A
Sbjct: 301 MGLIADIQPPDFETRVAILQKKSEFENMPLPRDVIEYIAARYTSNIRELEGALTRAVAYA 360

Query: 224 LSRGMGITRSLAAEVL 239
              G+ +T +  A VL
Sbjct: 361 SISGLALTLANIAPVL 376


>gi|15646137|ref|NP_208319.1| chromosomal replication initiation protein [Helicobacter pylori
           26695]
 gi|14194658|sp|O26057|DNAA_HELPY RecName: Full=Chromosomal replication initiator protein DnaA
 gi|2314709|gb|AAD08568.1| chromosomal replication initiator protein (dnaA) [Helicobacter
           pylori 26695]
          Length = 457

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 110 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 169

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 170 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 229

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 230 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 289

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           QI + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 290 QITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNASIDLNLAKTVLEDLQK 344


>gi|315639363|ref|ZP_07894525.1| DNA-directed DNA replication initiator protein [Campylobacter
           upsaliensis JV21]
 gi|315480689|gb|EFU71331.1| DNA-directed DNA replication initiator protein [Campylobacter
           upsaliensis JV21]
          Length = 439

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVI----LVGPSGSGKSCLANIWSDKSR 89
               + D  +V  + + A     +         +     + GP+G GK+ L     +   
Sbjct: 101 NPSFTFDSFVVGGSNQYAYATCKAVSQKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNACL 160

Query: 90  STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
                 I  + ++ + D    +                  L++D+  L   D    + F 
Sbjct: 161 EMGKKVIYATSENFINDFNSHIINKTMDKFQEKYQNCDVLLIDDVQFLGKTDKIQEKFFF 220

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I      ++MT+   P         L SR     +  I+ P  +    +I K    
Sbjct: 221 IFNEIRDQSGQIIMTSDNPPNMLKGITDRLKSRFANGIIADITPPQLETKIAIIRKKCEF 280

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ +  ++ +Y+   M  ++   E ++  ++  +      I+   A E++K+
Sbjct: 281 NEVNLSNEIISYLATAMGDNIREIEGMITNLNAYSRLINQEISLEFAKEMMKD 333


>gi|57506229|ref|ZP_00372148.1| chromosomal replication initiator protein DnaA [Campylobacter
           upsaliensis RM3195]
 gi|57015497|gb|EAL52292.1| chromosomal replication initiator protein DnaA [Campylobacter
           upsaliensis RM3195]
          Length = 439

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 80/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVI----LVGPSGSGKSCLANIWSDKSR 89
               + D  +V  + + A     +         +     + GP+G GK+ L     +   
Sbjct: 101 NPSFTFDSFVVGGSNQYAYATCKAVSQKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNACL 160

Query: 90  STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
                 I  + ++ + D    +                  L++D+  L   D    + F 
Sbjct: 161 EMGKKVIYATSENFINDFNSHIINKTMDKFQEKYQNCDVLLIDDVQFLGKTDKIQEKFFF 220

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N I      ++MT+   P         L SR     +  I+ P  +    +I K    
Sbjct: 221 IFNEIRDQSGQIIMTSDNPPNMLKGITDRLKSRFANGIIADITPPQLETKIAIIRKKCEF 280

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ +  ++ +Y+   M  ++   E ++  ++  +      I+   A E++K+
Sbjct: 281 NEVNLSNEIISYLATAMGDNIREIEGMITNLNAYSRLINQEISLEFAKEMMKD 333


>gi|302520514|ref|ZP_07272856.1| chromosomal replication initiator protein DnaA [Streptomyces sp.
           SPB78]
 gi|302429409|gb|EFL01225.1| chromosomal replication initiator protein DnaA [Streptomyces sp.
           SPB78]
          Length = 679

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 341 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 400

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 401 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 460

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +      +  P+ +    ++ K   
Sbjct: 461 TFNTLHNANKQIVLSSDRPPRQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 519

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 520 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 574


>gi|31791178|ref|NP_853671.1| chromosomal replication initiation protein [Mycobacterium bovis
           AF2122/97]
 gi|32700077|sp|P49991|DNAA_MYCBO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|31616763|emb|CAD92863.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycobacterium bovis
           AF2122/97]
          Length = 507

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 171 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 229

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 230 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 289

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 290 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 349

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ I   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 350 RLAIPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 402


>gi|283454960|ref|YP_003359524.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           dentium Bd1]
 gi|283101594|gb|ADB08700.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           dentium Bd1]
          Length = 500

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 31/233 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD---------K 87
            D  +   +   A  +  +           + + G SG GK+ L N   +         K
Sbjct: 162 FDTFVPGDSNRFARTVALAVAEGSGHDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPNLK 221

Query: 88  SRSTRFSNIAKSLDSILIDTR----------------KPVLLEDIDLLDFNDTQL---FH 128
            R              L DT                   +L++DI  L   +  L   FH
Sbjct: 222 VRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLSGKEATLEQFFH 281

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++HQ +  +++ +   P         L SR ++   V +  PD +    ++  M   
Sbjct: 282 TFNTLHQANKRIVIASDVPPKDLKGFQARLISRFESGLTVDVKPPDLETRIAILRMMATM 341

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               I   +   I +R   ++   E  ++++  +A      +TR+LA   L++
Sbjct: 342 NGSNIPNDVLNLIAERFTENIRELEGALNRVTAMASLSNQPVTRALAEHTLQD 394


>gi|262377659|ref|ZP_06070879.1| chromosomal replication initiator protein DnaA [Acinetobacter
           lwoffii SH145]
 gi|262307418|gb|EEY88561.1| chromosomal replication initiator protein DnaA [Acinetobacter
           lwoffii SH145]
          Length = 458

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 97/258 (37%), Gaps = 34/258 (13%)

Query: 13  PDKQKNDQPKN-KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--V 67
           P K+K D  KN +  QL          +    +   + + A             S+   +
Sbjct: 106 PKKEKEDSGKNSRRRQL------NPLFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPL 159

Query: 68  ILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR-------------- 108
            L GP+G GK+ L           K  +      A+S     + +               
Sbjct: 160 FLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTAESFVQDFVSSLQQGKVEEFKKNCRS 219

Query: 109 -KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI LL   +  L   F+  N++      +++T+  +P       P L SR   
Sbjct: 220 LDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSW 279

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              V +  PD +   ++++K     Q+ + +  A +I Q++  ++   E  ++K+  ++ 
Sbjct: 280 GLSVGVEPPDIETRIEILLKKAESNQVDLPRNCALFIAQQVVANVRELEGALNKVVAISR 339

Query: 225 SRGMGITRSLAAEVLKET 242
            +G  I   +  E LK+ 
Sbjct: 340 FKGTPIDLDVVRESLKDV 357


>gi|83591341|ref|YP_425093.1| chromosomal replication initiation protein [Rhodospirillum rubrum
           ATCC 11170]
 gi|83574255|gb|ABC20806.1| chromosomal replication initiator protein, DnaA [Rhodospirillum
           rubrum ATCC 11170]
          Length = 509

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 26/239 (10%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS---- 85
           P     + D+ +V    E A                 + L G  G GK+ L +  +    
Sbjct: 173 PLDPRFTFDNFVVGKPNEFAYAAAKRVADSTGVAFNPLFLYGGVGLGKTHLMHAIARGIR 232

Query: 86  --DKSRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQL 126
                R   + +  + +   +   R              + ++++DI  +   D    + 
Sbjct: 233 EASPHRRVIYLSAEQFMHRFIRALRQQDTMSFKEQFRSVEVLMVDDIQFISGKDSTQEEF 292

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++    S ++++A   P         L SR+    V  +     +    ++    
Sbjct: 293 FHTFNALVDQGSQIVLSADKSPTDLENIGARLRSRMACGLVADLHPTTYELRLGILESKA 352

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
               + + +K+  +I  ++  +    E  + ++   A   G  +T   A +VL +  + 
Sbjct: 353 EHMGVSVPEKVLEFIAHKIASNGREVEGALIRLIAHAQLVGRDLTLETAQDVLHDLLRT 411


>gi|227541371|ref|ZP_03971420.1| chromosomal replication initiation protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182922|gb|EEI63894.1| chromosomal replication initiation protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 527

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 97/257 (37%), Gaps = 35/257 (13%)

Query: 21  PKNKEEQLFF-SFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGS 75
           P  + +Q    +       + +  ++  +       A  + +S P+     + + G SG 
Sbjct: 169 PSTQPKQAPAANSTLNPKHTFESFVIGKSNQFSQAAAFAVAES-PAEAYNPLYIWGGSGL 227

Query: 76  GKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP----------VLL 113
           GK+ L +  +  + + +                   ++S+  D ++           +++
Sbjct: 228 GKTHLLH--ATGNYALQLHPGIRVMYVSSEEFTNDYINSVRDDKQESFKHRYRNLDILMV 285

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVK 169
           +DI  L+  +    + FH  N++HQ +  +++++   P +  V L D L +R +A  +  
Sbjct: 286 DDIQFLEGKEGTQEEFFHTFNALHQANKQIILSSDRPPQNL-VTLEDRLRTRFQAGLITD 344

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  PD +    ++ K      + +D+     I      S+   E  + ++   A      
Sbjct: 345 IQPPDLETRIAILEKKAIAEHVQVDRDSLTEIATPFPGSIRSLEGALIRVTAFASLTHRQ 404

Query: 230 ITRSLAAEVLKETQQCD 246
           IT  L  E L +    +
Sbjct: 405 ITPDLVREALSDLIGTE 421


>gi|9845531|gb|AAB38528.2| chromosomal replication initiator protein [Mycobacterium
           tuberculosis]
          Length = 507

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 171 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 229

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 230 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 289

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 290 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 349

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 350 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 402


>gi|306826410|ref|ZP_07459724.1| DNA-directed DNA replication initiator protein [Streptococcus
           pyogenes ATCC 10782]
 gi|304431405|gb|EFM34400.1| DNA-directed DNA replication initiator protein [Streptococcus
           pyogenes ATCC 10782]
          Length = 451

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 41/268 (15%)

Query: 15  KQKNDQPKNKEEQLFFS-FPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65
           +Q   +   K +Q   +  P          S ++ +       AV     + + P     
Sbjct: 87  EQNQTKINQKTKQQALNSLPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYN 146

Query: 66  VVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDT 107
            + + G  G GK+ L N   +                              ++D +    
Sbjct: 147 PLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKF 206

Query: 108 RKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           R    +L++DI  L          + F+  N++H  +  +++T+   P         L +
Sbjct: 207 RNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVT 266

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R K    V I+ PD +    ++     +      +    Y+  + + ++   E  +  + 
Sbjct: 267 RFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI- 325

Query: 221 NLALSRGMG----ITRSLAAEVLKETQQ 244
             +L         IT  +AAE ++  +Q
Sbjct: 326 --SLVANFKQIDTITVDIAAEAIRARKQ 351


>gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis H37Rv]
 gi|15839373|ref|NP_334410.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis CDC1551]
 gi|148659758|ref|YP_001281281.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148821192|ref|YP_001285946.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis F11]
 gi|167969464|ref|ZP_02551741.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215405983|ref|ZP_03418164.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis 02_1987]
 gi|215413853|ref|ZP_03422518.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215425187|ref|ZP_03423106.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis T92]
 gi|215432906|ref|ZP_03430825.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis EAS054]
 gi|215448272|ref|ZP_03435024.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis T85]
 gi|218755717|ref|ZP_03534513.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis GM 1503]
 gi|219555772|ref|ZP_03534848.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis T17]
 gi|253796916|ref|YP_003029917.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254366461|ref|ZP_04982505.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254548929|ref|ZP_05139376.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260184854|ref|ZP_05762328.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|260198985|ref|ZP_05766476.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis T46]
 gi|260203138|ref|ZP_05770629.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis K85]
 gi|289441368|ref|ZP_06431112.1| chromosomal replication initiator protein DnaA [Mycobacterium
           tuberculosis T46]
 gi|289445526|ref|ZP_06435270.1| chromosomal replication initiator protein DnaA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289552251|ref|ZP_06441461.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis KZN 605]
 gi|289567883|ref|ZP_06448110.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis T17]
 gi|289572577|ref|ZP_06452804.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis K85]
 gi|289747769|ref|ZP_06507147.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis 02_1987]
 gi|289748463|ref|ZP_06507841.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis T92]
 gi|289756060|ref|ZP_06515438.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis EAS054]
 gi|289760098|ref|ZP_06519476.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289764116|ref|ZP_06523494.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis GM 1503]
 gi|294995607|ref|ZP_06801298.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis 210]
 gi|297632469|ref|ZP_06950249.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729438|ref|ZP_06958556.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis KZN R506]
 gi|298527397|ref|ZP_07014806.1| dnaA [Mycobacterium tuberculosis 94_M4241A]
 gi|306795595|ref|ZP_07433897.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu006]
 gi|306801570|ref|ZP_07438238.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu008]
 gi|306805779|ref|ZP_07442447.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu007]
 gi|307086727|ref|ZP_07495840.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu012]
 gi|313656767|ref|ZP_07813647.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis KZN V2475]
 gi|3123213|sp|P49993|DNAA_MYCTU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166214683|sp|A5TY69|DNAA_MYCTA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|1321904|emb|CAA63257.1| dnaA [Mycobacterium tuberculosis H37Rv]
 gi|2808711|emb|CAA16238.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycobacterium
           tuberculosis H37Rv]
 gi|13879042|gb|AAK44224.1| chromosomal replication initiator protein DnaA [Mycobacterium
           tuberculosis CDC1551]
 gi|134151973|gb|EBA44018.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148503910|gb|ABQ71719.1| chromosomal replication initiation protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148719719|gb|ABR04344.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis F11]
 gi|253318419|gb|ACT23022.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414287|gb|EFD11527.1| chromosomal replication initiator protein DnaA [Mycobacterium
           tuberculosis T46]
 gi|289418484|gb|EFD15685.1| chromosomal replication initiator protein DnaA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289436883|gb|EFD19376.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis KZN 605]
 gi|289537008|gb|EFD41586.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis K85]
 gi|289541636|gb|EFD45285.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis T17]
 gi|289688297|gb|EFD55785.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis 02_1987]
 gi|289689050|gb|EFD56479.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis T92]
 gi|289696647|gb|EFD64076.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis EAS054]
 gi|289711622|gb|EFD75638.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis GM 1503]
 gi|289715662|gb|EFD79674.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298497191|gb|EFI32485.1| dnaA [Mycobacterium tuberculosis 94_M4241A]
 gi|308343891|gb|EFP32742.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu006]
 gi|308347675|gb|EFP36526.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu007]
 gi|308351593|gb|EFP40444.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu008]
 gi|308363877|gb|EFP52728.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu012]
 gi|323717340|gb|EGB26545.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis CDC1551A]
 gi|326905758|gb|EGE52691.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis W-148]
 gi|328456707|gb|AEB02130.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 507

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 171 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 229

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 230 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 289

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 290 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 349

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 350 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 402


>gi|184199647|ref|YP_001853854.1| chromosomal replication initiator protein DnaA [Kocuria rhizophila
           DC2201]
 gi|183579877|dbj|BAG28348.1| chromosomal replication initiator protein DnaA [Kocuria rhizophila
           DC2201]
          Length = 564

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS---WPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++  +   A     +    P+     + + G SG GK+ L +     ++  
Sbjct: 224 NPKYVFDSFVIGQSNRFAHAAAFAVAETPAKAYNPLFIYGDSGLGKTHLLHAIGHYAKRL 283

Query: 91  -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
                 R+ N  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 284 YPKMRVRYVNSEEFTNDFINSIRDDEGSSFKGIYRNVDLLLIDDIQFLAGKEHTQEEFFH 343

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H ++  +++T+   P         + SR +   +  +  P+ +    ++ K    
Sbjct: 344 TFNALHNHEKQIVITSDMPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAILRKKAIS 403

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +     +  YI   +  ++   E  + ++   A      +   LA  VLK+ 
Sbjct: 404 EGMDAPDDVMEYIASHISTNIRELEGALIRVTAFASLNKQPVDLPLAELVLKDL 457


>gi|171741734|ref|ZP_02917541.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC
           27678]
 gi|306823996|ref|ZP_07457370.1| DNA-directed DNA replication initiator protein [Bifidobacterium
           dentium ATCC 27679]
 gi|309801964|ref|ZP_07696078.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           dentium JCVIHMP022]
 gi|171277348|gb|EDT45009.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC
           27678]
 gi|304552994|gb|EFM40907.1| DNA-directed DNA replication initiator protein [Bifidobacterium
           dentium ATCC 27679]
 gi|308221412|gb|EFO77710.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           dentium JCVIHMP022]
          Length = 500

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 31/233 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD---------K 87
            D  +   +   A  +  +           + + G SG GK+ L N   +         K
Sbjct: 162 FDTFVPGDSNRFARTVALAVAEGSGHDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPNLK 221

Query: 88  SRSTRFSNIAKSLDSILIDTR----------------KPVLLEDIDLLDFNDTQL---FH 128
            R              L DT                   +L++DI  L   +  L   FH
Sbjct: 222 VRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLSGKEATLEQFFH 281

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++HQ +  +++ +   P         L SR ++   V +  PD +    ++  M   
Sbjct: 282 TFNTLHQANKRIVIASDVPPKDLKGFQARLISRFESGLTVDVKPPDLETRIAILRMMATM 341

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               I   +   I +R   ++   E  ++++  +A      +TR+LA   L++
Sbjct: 342 NGSNIPNDVLNLIAERFTENIRELEGALNRVTAMASLSNQPVTRALAEHTLQD 394


>gi|218960351|ref|YP_001740126.1| chromosomal replication initiation protein [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729008|emb|CAO79919.1| chromosomal replication initiation protein [Candidatus Cloacamonas
           acidaminovorans]
          Length = 443

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 86/237 (36%), Gaps = 29/237 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS---WPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D+ +V      A     +    P +    + + G SG GK+ L       I  +
Sbjct: 105 NERYTFDEFVVGKNNNFAYSAAKAVAESPGYTYNPLFIYGESGMGKTHLMQAIGNYILKE 164

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDID---LLDFNDTQLFH 128
               + +   +++  + +ID  +                +L++DI      +    + FH
Sbjct: 165 GRNCSIYYITSEAFTNEMIDGIRSNKMPEFRAKFRKVDLLLMDDIHFLSRKEGTQEEFFH 224

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T+   P         L +R ++  +  +  PD +    ++ K    
Sbjct: 225 TFNALFENKKQIVLTSDRPPKDIPDLEKRLVTRFESGLLCDLKSPDFETRVAILRKKAEP 284

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG---ITRSLAAEVLKET 242
             + +   +  +I   +  S+   E  + ++   +    +    I  +LAAE+L + 
Sbjct: 285 ENVVLSDAIFNFIADNITSSVRALEGSLIRILAFSSYNKLNPEDIDINLAAEILSDM 341


>gi|239942670|ref|ZP_04694607.1| chromosomal replication initiation protein [Streptomyces
           roseosporus NRRL 15998]
 gi|239989129|ref|ZP_04709793.1| chromosomal replication initiation protein [Streptomyces
           roseosporus NRRL 11379]
          Length = 611

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 273 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 332

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 333 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 392

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +      +  P+ +    ++ K   
Sbjct: 393 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 451

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 452 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 506


>gi|109946641|ref|YP_663869.1| chromosomal replication initiation protein [Helicobacter
           acinonychis str. Sheeba]
 gi|122973477|sp|Q17ZQ6|DNAA_HELAH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|109713862|emb|CAJ98870.1| chromosomal replication initiator protein [Helicobacter acinonychis
           str. Sheeba]
          Length = 449

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 88/235 (37%), Gaps = 30/235 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLI------DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
             + ++ +V S       +       D+ P  P   V+  G +G GK+ + N   + +  
Sbjct: 111 SYTFENFVVGSCNNTVYEIAKKIAQSDTPPYNP---VLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLRDFLKHLNNRSMDSFKEKYRHCDFFLLDDAQFLQGKPQLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H  +  +++ +   P +       L SR +     KI  PD +    ++ +     
Sbjct: 228 FNELHANNRQIVLISDRSPKNIAGLEDRLKSRFEWGITAKIMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KIILPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|312865764|ref|ZP_07725986.1| chromosomal replication initiator protein DnaA [Streptococcus
           downei F0415]
 gi|311098639|gb|EFQ56861.1| chromosomal replication initiator protein DnaA [Streptococcus
           downei F0415]
          Length = 462

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 31/257 (12%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGS 75
                +  Q             D+ +     + A      + + P      + + G  G 
Sbjct: 106 QPGSTQSSQPALPSNLNPKYQFDNFIQGDENKWAKAASIAVANSPGTTYNPLFIWGGPGL 165

Query: 76  GKSCLANIWSDK------SRSTRFSNIAKSLDSIL--------------IDTRKPVLLED 115
           GK+ L N   +       +   R+      ++  +                +   +L++D
Sbjct: 166 GKTHLLNAIGNTVLENNPNARVRYITAENFINEFVTHIRLESMEELKDNFRSLDVLLIDD 225

Query: 116 IDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           I  L          + F+  N++H  +  +++T+   P         L +R K    V I
Sbjct: 226 IQSLAKKTLEGTQEEFFNTFNALHANNKQIVLTSDRTPDHLNNLEERLVTRFKWGLTVDI 285

Query: 171 SLPDDDFLEKVIVKMFADRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           + PD +    ++     ++       +    Y+  + + ++   E  +  ++ +A  +  
Sbjct: 286 TPPDYETRIAILTNKILEQGFPYTFSQDTIEYLAGQFDSNVRDLEGALKDINLVATVKQA 345

Query: 229 G-ITRSLAAEVLKETQQ 244
             IT  LAAE ++  +Q
Sbjct: 346 NVITVDLAAEAIRARKQ 362


>gi|121635884|ref|YP_976107.1| chromosomal replication initiation protein [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|121635911|ref|YP_976134.1| chromosomal replication initiation protein [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224988384|ref|YP_002643051.1| chromosomal replication initiation protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|254777908|sp|C1AIZ8|DNAA_MYCBT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|121491531|emb|CAL69985.1| chromosomal replication initiation protein dnaA [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|121491558|emb|CAL70015.1| Chromosomal replication initiator protein dnaA [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224771497|dbj|BAH24303.1| chromosomal replication initiation protein [Mycobacterium bovis BCG
           str. Tokyo 172]
          Length = 507

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 171 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 229

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 230 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 289

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 290 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 349

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 350 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 402


>gi|110677616|ref|YP_680623.1| chromosomal replication initiation protein [Roseobacter
           denitrificans OCh 114]
 gi|123362395|sp|Q16DK6|DNAA_ROSDO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|109453732|gb|ABG29937.1| chromosomal replication initiator protein DnaA [Roseobacter
           denitrificans OCh 114]
          Length = 454

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P     + D+ +V    E A                 + L G  G GK+ L +  + + R
Sbjct: 113 PLDARFTFDNFIVGKPNELAHAAAKRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELR 172

Query: 90  STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF---NDTQL 126
             R       L +                     +  +   ++++D+  +        + 
Sbjct: 173 LRRPEMNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKGSTQEEF 232

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185
           FH  N++   +  ++++    P         + SRL+   VV +   D +    ++  K+
Sbjct: 233 FHTFNALVDQNKQIIISGDRAPGEIKDMEERVKSRLQCGLVVDLHPTDYELRLGILQSKV 292

Query: 186 FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              R     + I   +  ++  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 293 EQQRKNYPGLDISDGVLEFLAHRISTNVRVLEGALTRLCAFASLVGREIDMELTQDCLSD 352

Query: 242 TQQC 245
             + 
Sbjct: 353 VLRA 356


>gi|282863320|ref|ZP_06272379.1| chromosomal replication initiator protein DnaA [Streptomyces sp.
           ACTE]
 gi|282561655|gb|EFB67198.1| chromosomal replication initiator protein DnaA [Streptomyces sp.
           ACTE]
          Length = 577

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 92/260 (35%), Gaps = 38/260 (14%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV 66
           P  Q    P   E       P          D  ++ ++      A   +   P+     
Sbjct: 221 PGSQSAPAPGTNE-------PHARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNP 273

Query: 67  VILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRKP---------- 110
           + + G SG GK+ L +     +RS       R+ +  +  +  +   R            
Sbjct: 274 LFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYR 333

Query: 111 ----VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRL 162
               +L++DI  L   +    + FH  N++H  +  +++++   P    V L D L +R 
Sbjct: 334 DVDILLVDDIQFLASKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRF 392

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +      +  P+ +    ++ K     Q+    ++  +I  R+ R++   E  + ++   
Sbjct: 393 EWGLTTDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAF 452

Query: 223 ALSRGMGITRSLAAEVLKET 242
           A      +   L   VLK+ 
Sbjct: 453 ASLNRQPVDLGLTEIVLKDL 472


>gi|300309347|ref|YP_003773439.1| chromosomal replication initiator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072132|gb|ADJ61531.1| chromosomal replication initiator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 465

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
              ++ D+L+   A + A        + P      + L G  G GK+ + +   ++    
Sbjct: 131 NPVLTFDNLVTGKANQLARAAATQVANNPGTSYNPLFLYGGVGLGKTHIIHAIGNQVLVD 190

Query: 88  --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
                 R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 191 NPGAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFFGGKSRTQEEFFY 250

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++      +++T+ T+P         L SR  +   V I  P+ +    +++K  + 
Sbjct: 251 AFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLTVAIEPPELEMRVAILMKKASA 310

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +   +A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 311 EDVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIDVVKEALKDL 364


>gi|160932427|ref|ZP_02079817.1| hypothetical protein CLOLEP_01262 [Clostridium leptum DSM 753]
 gi|156868386|gb|EDO61758.1| hypothetical protein CLOLEP_01262 [Clostridium leptum DSM 753]
          Length = 438

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 26/235 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWS--------- 85
            + D  +V S+ + A     +    P+     + + G SG GK+ L              
Sbjct: 105 FTFDTYIVGSSNKFAHAASLAVAANPAGAYNPLFIYGNSGLGKTHLLYAICNDLKRSHPE 164

Query: 86  --------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIIN 131
                   D   +     I     S      +    +L++DI  +   D    + FH  N
Sbjct: 165 MTTLYIKGDDFTNELIDAIQHGTTSTFHQKYRKTDVLLVDDIQFIAGKDSTQEEFFHTFN 224

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           S+++    +++T+   P         L +R +   +  I  PD +    +I +      +
Sbjct: 225 SLYEAKKQIVLTSDRPPKEIQTLEDRLRTRFEWGLIADIQPPDFETRIAIIKRKAEALDL 284

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            +   +  YI  R++ ++   E  V KM    L  G   T + A   + +    D
Sbjct: 285 ELPGDVCEYIATRLKTNIRQLEGAVKKMKANWLLNGDAPTMANAQTAISDILNND 339


>gi|317181210|dbj|BAJ58996.1| chromosomal replication initiation protein [Helicobacter pylori
           F32]
          Length = 455

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPIDLNLAKTVLEDLQK 342


>gi|317179709|dbj|BAJ57497.1| chromosomal replication initiation protein [Helicobacter pylori
           F30]
          Length = 455

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPIDLNLAKTVLEDLQK 342


>gi|217034280|ref|ZP_03439697.1| hypothetical protein HP9810_885g11 [Helicobacter pylori 98-10]
 gi|216943252|gb|EEC22717.1| hypothetical protein HP9810_885g11 [Helicobacter pylori 98-10]
          Length = 455

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPIDLNLAKTVLEDLQK 342


>gi|318079379|ref|ZP_07986711.1| chromosomal replication initiation protein [Streptomyces sp.
           SA3_actF]
          Length = 361

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 23  NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 82

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 83  YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 142

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +      +  P+ +    ++ K   
Sbjct: 143 TFNTLHNANKQIVLSSDRPPRQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 201

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 202 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 256


>gi|288929563|ref|ZP_06423407.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288329068|gb|EFC67655.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 469

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 88/262 (33%), Gaps = 40/262 (15%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVI 68
           P K++   P+    Q           +  + +   + + +    + + +   +     + 
Sbjct: 121 PAKEQELDPQLNPHQ-----------TFSNYIEGESNKLSRSVGLSVAEHPNTNQFNPMF 169

Query: 69  LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107
           + GPSG GK+ L                     A+++  +  +    N           T
Sbjct: 170 IYGPSGCGKTHLVNAIGVQTKQLYPQKRVLYISAHLFQVQFVNAVLKNATNDF-IKFYQT 228

Query: 108 RKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              ++++D+      D      FHI N + +    +++ +   PV        L +R   
Sbjct: 229 IDMLIVDDVQTWASADKTQETFFHIFNHLFRNGKRIILASDRPPVELNEMSDRLITRFSC 288

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             + ++  P+      ++        + I  ++  +I +    S+   E +++ +   ++
Sbjct: 289 GIIAELEKPNVQLCVDILNAKIRRDGLKIPAEVTQFIAETANGSVRDLEGVINSLMAYSV 348

Query: 225 SRGMGITRSLAAEVLKETQQCD 246
                I   LA  V+K   + D
Sbjct: 349 VYNSDIDMRLAERVIKRAVKVD 370


>gi|333025720|ref|ZP_08453784.1| putative chromosomal replication initiation protein [Streptomyces
           sp. Tu6071]
 gi|332745572|gb|EGJ76013.1| putative chromosomal replication initiation protein [Streptomyces
           sp. Tu6071]
          Length = 699

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 361 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 420

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 421 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 480

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +      +  P+ +    ++ K   
Sbjct: 481 TFNTLHNANKQIVLSSDRPPRQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 539

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 540 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 594


>gi|325860078|ref|ZP_08173204.1| chromosomal replication initiator protein DnaA [Prevotella
           denticola CRIS 18C-A]
 gi|325482363|gb|EGC85370.1| chromosomal replication initiator protein DnaA [Prevotella
           denticola CRIS 18C-A]
          Length = 468

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 84/253 (33%), Gaps = 33/253 (13%)

Query: 21  PKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSG 76
           P++ + QL          S ++ +   +        + + +   +     + + GPSG G
Sbjct: 123 PQDIDSQL------DPHKSFNNYVEGDSNKLPRSIGLSIAEHPNTTQFNPMFIYGPSGCG 176

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSILID--------------------TRKPVLLEDI 116
           K+ L N    + +          + + L                      T   ++++DI
Sbjct: 177 KTHLVNAIGLRVKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDVLIVDDI 236

Query: 117 D---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
                        FHI N + +    +++ +   PV        L +R     + ++  P
Sbjct: 237 QEWATATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKP 296

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           +      ++        + I + +  +I +    S+   + +++ +   ++     I   
Sbjct: 297 NVQLCIDILHNKIKRDGLCIPEDVVRFISETANGSVRDLQGVINSLLAYSVVYNSNIDMR 356

Query: 234 LAAEVLKETQQCD 246
           LA  V+K   + D
Sbjct: 357 LAERVIKRAVKID 369


>gi|317010101|gb|ADU80681.1| chromosomal replication initiation protein [Helicobacter pylori
           India7]
          Length = 455

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNDLHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|315635401|ref|ZP_07890667.1| DNA-directed DNA replication initiator protein [Arcobacter butzleri
           JV22]
 gi|315480159|gb|EFU70826.1| DNA-directed DNA replication initiator protein [Arcobacter butzleri
           JV22]
          Length = 320

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 75/197 (38%), Gaps = 21/197 (10%)

Query: 67  VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           + + G +G GK+ L         +K  +  +  I + ++      +              
Sbjct: 20  LFIYGGTGLGKTHLLQAVGNHAIEKGNTVIYVTIEQFMNDFTFSIKNKNMEHFRNKYRKC 79

Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI  L   +    + FH  N +H     ++MT+   P      +  L SR +  
Sbjct: 80  DVLLIDDIQFLSGKEQTQEEFFHTFNELHNAKKQIVMTSDRLPSQIAGLVDRLKSRFEWG 139

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
               + +P  +    +I K      I + +++  +I   ++ S+   E ++ +++  A  
Sbjct: 140 LTADVQIPGLETKIAIIEKKSELNGICLSREIINFIATNLDNSIREIEGVLIRINASASL 199

Query: 226 RGMGITRSLAAEVLKET 242
               IT  +   +LKE 
Sbjct: 200 LNQEITLPMVQGLLKEQ 216


>gi|284051271|ref|ZP_06381481.1| chromosomal replication initiation protein [Arthrospira platensis
           str. Paraca]
 gi|291566281|dbj|BAI88553.1| chromosomal replication initiator protein DnaA [Arthrospira
           platensis NIES-39]
          Length = 453

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 35/243 (14%)

Query: 33  PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-- 86
           P           +V +    A     +    P R    + L G  G GK+ L        
Sbjct: 115 PHLNSKYMFSQFVVGAGSRLAHAASLAVAESPGREFNPLFLCGGVGLGKTHLMQAIGHYR 174

Query: 87  -----KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQ 125
                 +R    S    + D I                    +L++DI  ++  +    +
Sbjct: 175 LEINPLARVFYVSTEKFTNDLITAIRRDSMQSFRDHYRAADVLLVDDIQFIEGKEYTQEE 234

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++H+    +++ +   P         LCSR     V  I  PD +    ++ K 
Sbjct: 235 FFHTFNTLHEAGKQIVLASDRPPTKISGLQDRLCSRFSMGLVADIQPPDLETRMAILQKK 294

Query: 186 FADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                + +   +  YI        R L     + V  +   +L     +T    A VL  
Sbjct: 295 AEYENMRLPPAVIEYIATNYTSNIRELEGALIRAVAYISISSL----PMTVENIAAVLTP 350

Query: 242 TQQ 244
            +Q
Sbjct: 351 KEQ 353


>gi|254414409|ref|ZP_05028175.1| chromosomal replication initiator protein DnaA [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178639|gb|EDX73637.1| chromosomal replication initiator protein DnaA [Microcoleus
           chthonoplastes PCC 7420]
          Length = 461

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 31/243 (12%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
             S+ VP     D  +    QL               +V S    A     +    P R 
Sbjct: 94  GISWSVPVAANPDTER-PSHQLPKPTELNQKYVFSRFVVGSNNRMAHAAALAVAESPGRE 152

Query: 67  ---VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDT----------- 107
              + L G  G GK+ L        W +   S  F    +   + LI             
Sbjct: 153 FNPLFLCGGVGLGKTHLMQAIAHFRWENSPNSKIFYVSTEHFTNDLIAAIRKDSMQSFRE 212

Query: 108 ----RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                + +L++DI  ++  +    + FH  N++H+    +++ +   P         LCS
Sbjct: 213 HYRAAEVLLIDDIQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPHQISRLQERLCS 272

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLV 216
           R     +  I  PD +    ++ K      I + + +  YI  + +   R L     ++V
Sbjct: 273 RFSMGLIADIQPPDLETRMAILQKKAEYENIRLPRSVVEYIATQYKSNIRELEGALIRVV 332

Query: 217 DKM 219
             +
Sbjct: 333 AYI 335


>gi|326778148|ref|ZP_08237413.1| Chromosomal replication initiator protein dnaA [Streptomyces cf.
           griseus XylebKG-1]
 gi|326658481|gb|EGE43327.1| Chromosomal replication initiator protein dnaA [Streptomyces cf.
           griseus XylebKG-1]
          Length = 608

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 270 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 329

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 330 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 389

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +      +  P+ +    ++ K   
Sbjct: 390 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 448

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 449 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 503


>gi|225020863|ref|ZP_03710055.1| hypothetical protein CORMATOL_00871 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681620|ref|ZP_07404426.1| chromosomal replication initiator protein DnaA [Corynebacterium
           matruchotii ATCC 14266]
 gi|224946345|gb|EEG27554.1| hypothetical protein CORMATOL_00871 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658780|gb|EFM48281.1| chromosomal replication initiator protein DnaA [Corynebacterium
           matruchotii ATCC 14266]
          Length = 594

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 91/255 (35%), Gaps = 31/255 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVG 71
           +  ++P +   Q           + D  +V  +       A+ + +  P+     + + G
Sbjct: 240 RSREKPAHNPAQ---DDSLNPRYTFDTYVVSDSNKLPTSAAIAVAEK-PARAYNPLFVWG 295

Query: 72  PSGSGKSCLANIW----SDKSRSTRFSNIA------KSLDSILIDTRKP----------V 111
            SG GK+ L +           + R   ++        ++S+  D ++           +
Sbjct: 296 DSGLGKTHLMHAIGNYAQQLDPNLRIKYVSSEQFTNDYINSVRDDRQESFKRRYRNLDIL 355

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           +++DI  L   +    + FH  N++ Q    +++++   P         L +R ++  + 
Sbjct: 356 MVDDIQFLQGKEGTQEEFFHTFNALQQGGKQIVLSSDRPPKQLTTLEDRLRTRFQSGLIA 415

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            I  PD +    +++K     QI   + +   I  +   S+   E    ++   A     
Sbjct: 416 DIYPPDLETRIAILMKKAEAEQIVASRDVLELIASQFSSSIRELEGAFIRVSAWASLNNQ 475

Query: 229 GITRSLAAEVLKETQ 243
            I    A + L++  
Sbjct: 476 QINLKTAEQALEDLM 490


>gi|327312316|ref|YP_004327753.1| chromosomal replication initiator protein DnaA [Prevotella
           denticola F0289]
 gi|326945680|gb|AEA21565.1| chromosomal replication initiator protein DnaA [Prevotella
           denticola F0289]
          Length = 468

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 84/254 (33%), Gaps = 35/254 (13%)

Query: 21  PKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSG 76
           P++ + QL          S ++ +   +        + + +   +     + + GPSG G
Sbjct: 123 PQDIDSQL------DPHKSFNNYVEGDSNKLPRSIGLSIAEHPNTTQFNPMFIYGPSGCG 176

Query: 77  KSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
           K+ L                     A ++  +   +   N           T   ++++D
Sbjct: 177 KTHLVNAVGLRVKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDF-INFYQTIDVLIVDD 235

Query: 116 ID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I             FHI N + +    +++ +   PV        L +R     + ++  
Sbjct: 236 IQEWATATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEK 295

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+      ++        + I + +  +I +    S+   + +++ +   ++     I  
Sbjct: 296 PNVQLCIDILHNKIKRDGLCIPEDVVRFISETANGSVRDLQGVINSLLAYSVVYNSNIDM 355

Query: 233 SLAAEVLKETQQCD 246
            LA  V+K   + D
Sbjct: 356 RLAERVIKRAVKID 369


>gi|300689715|ref|YP_003750710.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Ralstonia solanacearum
           PSI07]
 gi|299076775|emb|CBJ49382.1| chromosomal replication initiator protein DnaA, DNA-binding
           transcriptional dual regulator [Ralstonia solanacearum
           PSI07]
          Length = 525

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
              ++ D+L+   A + A        + P +    + L G  G GK+ L +   +     
Sbjct: 191 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 250

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128
             ++R           D +    RK              +L++DI           + F+
Sbjct: 251 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 310

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + +++T+ T+P         L SR  +   V I  P+ +    +++K    
Sbjct: 311 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 370

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + +++A ++ + +  ++   E  + K+   +   G  IT  +  E LK+ 
Sbjct: 371 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 424


>gi|210135692|ref|YP_002302131.1| chromosomal replication initiation protein [Helicobacter pylori
           P12]
 gi|226735815|sp|B6JP23|DNAA_HELP2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|210133660|gb|ACJ08651.1| chromosomal replication initiator protein [Helicobacter pylori P12]
          Length = 455

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  P+ +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPNLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           QI + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 QITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|298345816|ref|YP_003718503.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii
           ATCC 43063]
 gi|304390480|ref|ZP_07372433.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|315657689|ref|ZP_07910571.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|298235877|gb|ADI67009.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii
           ATCC 43063]
 gi|304326236|gb|EFL93481.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|315492161|gb|EFU81770.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 483

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 81/235 (34%), Gaps = 26/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  ++ S+      A   + + P+     + + G  G GK+ L +         
Sbjct: 143 NPTYTFDSFVIGSSNSFTAAAAESVVASPAKAYNPLFIYGGPGLGKTHLLHAIGNYALEL 202

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFNDTQL---FH 128
                     S++  +   + IA    +      + V   L++DI  L   +  L   FH
Sbjct: 203 YPDSKVKYISSEEFTNEFINAIASQTFAEFQARYREVDFLLIDDIQFLAGKEQTLEEFFH 262

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     +++T+   P         + SRL+   +  I  P  +    ++ +    
Sbjct: 263 TFNTLHTAQKQVVITSDVAPKELKGFEERVRSRLEWGLMADIQPPSLETRIAILRRKAQA 322

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             + +   +A +I   ++  +   E  + ++        +  T   A   +++  
Sbjct: 323 GNMQMPDDVAEFIASNVDSDIRALEGALIRVTAYWSLNHVPATIETAKLAIRDLM 377


>gi|56750458|ref|YP_171159.1| chromosomal replication initiation protein [Synechococcus elongatus
           PCC 6301]
 gi|56685417|dbj|BAD78639.1| chromosomal replication initiator protein DnaA [Synechococcus
           elongatus PCC 6301]
          Length = 482

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 82/256 (32%), Gaps = 31/256 (12%)

Query: 13  PDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           P  +    P     +              SR   +V +    A     +   +P R    
Sbjct: 123 PAVEVVKPPTTTAGRPPLRSSDLNPKYVFSR--FVVGAYNRMAHAASLAIAEYPGREYNP 180

Query: 67  VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT-------------- 107
           + L G  G GK+ L              +  F    +   + LI                
Sbjct: 181 LFLCGGVGLGKTHLMQAIGHYRLEIDPDAKIFYVSTEQFTNDLIAAIRRDSMQSFREHYR 240

Query: 108 -RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               ++++DI  ++  +    + F+  NS+H+    +++ +   P         L SR  
Sbjct: 241 AADVIMVDDIQFIEGKEYTQEEFFYTFNSLHEAGKQIVLASDRPPSQIPRLQERLISRFS 300

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              +  I  PD +    ++ K      + + + +  YI  R   ++   E  + +    A
Sbjct: 301 MGLIADIQPPDFETRVAILQKKSEFENMPLPRDVIEYIAARYTSNIRELEGALTRAVAYA 360

Query: 224 LSRGMGITRSLAAEVL 239
              G+ +T +  A VL
Sbjct: 361 SISGLALTLANIAPVL 376


>gi|87198027|ref|YP_495284.1| chromosomal replication initiator protein DnaA [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133708|gb|ABD24450.1| chromosomal replication initiator protein DnaA [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 498

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 33/237 (13%)

Query: 35  CLGISRDDLLVHSAIEQAV------RLIDSWPSWPSRVVILVGPSGSGKSCLANIW---- 84
              ++  + +  SA   AV        I++    P   + L G +G GK+ L +      
Sbjct: 163 DPSLTFAEFVSGSANVLAVNAAQRMAAIEAPQFSP---LYLKGSTGQGKTHLLHAIGHAF 219

Query: 85  -SDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLL---DFNDTQ 125
            ++K  +  F   A+      +   +                +L++DI  +        +
Sbjct: 220 AANKPGARIFYCSAERFMIEFVQAMRSNEMIEFKSRLRGFDMLLVDDIQFIIGKASTQEE 279

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H I+++      L++ A   P +       L SRL    V  I   D +   K++   
Sbjct: 280 FLHTIDALMSAGKRLVVAADRAPQALDGVEQRLLSRLSMGLVADIQPADIELRRKILEHR 339

Query: 186 FADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            A      +   +  ++ + + R++      ++K+   A   G  ++  LA E L +
Sbjct: 340 LARFGNTQVPSDVVEFLARTINRNVRELVGGLNKLIAYAQLTGQPVSLQLAEEQLTD 396


>gi|296533903|ref|ZP_06896430.1| DNA-directed DNA replication initiator protein [Roseomonas
           cervicalis ATCC 49957]
 gi|296265778|gb|EFH11876.1| DNA-directed DNA replication initiator protein [Roseomonas
           cervicalis ATCC 49957]
          Length = 365

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 88/254 (34%), Gaps = 26/254 (10%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPS 73
           +  P+  E +  ++ P     + D  +V    E A          P+      + L G  
Sbjct: 14  SSAPRGAESRNDWAAPLDPRFTFDSFVVGKPNEFAHACARRVAEKPASPGFNPLFLYGGV 73

Query: 74  GSGKSCLAN--IWSDKSRSTR--------------FSNIAKSLDSILIDTRKPV---LLE 114
           G GK+ L +   W+      R               + +         ++ + V   +++
Sbjct: 74  GLGKTHLMHSIAWAISFNGQRNVAYMSAEKFMYRFIAALRSQSTMEFKESLRSVDVLMID 133

Query: 115 DIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           D+  L   D    + FH  N++      ++++A   P         L +RL    V  I 
Sbjct: 134 DLQFLIGKDNTQEEFFHTFNALVDAGKQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIH 193

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
               +    ++       ++ +  ++  ++  ++  ++   E  ++++   A   G  IT
Sbjct: 194 ATTYELRISILQAKAQGAEVDVPPRVLEFLAHKITSNVRELEGALNRLIAHANLFGRPIT 253

Query: 232 RSLAAEVLKETQQC 245
              A EVL +  + 
Sbjct: 254 LESAQEVLHDILRA 267


>gi|148269146|ref|YP_001243606.1| chromosomal replication initiation protein [Thermotoga petrophila
           RKU-1]
 gi|166215367|sp|A5IIK7|DNAA_THEP1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|147734690|gb|ABQ46030.1| chromosomal replication initiator protein DnaA [Thermotoga
           petrophila RKU-1]
          Length = 440

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 85/235 (36%), Gaps = 26/235 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN-------- 82
           P     + ++ +V      A          P R   + + G  G GK+ L          
Sbjct: 97  PLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ 156

Query: 83  ---------IWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL---DFNDTQL 126
                    I S+K  +    ++ +   +   +  +     +L++D+  L       T+L
Sbjct: 157 NEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTEL 216

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N +H     +++ +   P         L SR +   V K+  PD++  + +  KM 
Sbjct: 217 FHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAKKML 276

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                 + +++  ++ + ++ +L      + K+     + G  +    A  +LK+
Sbjct: 277 EIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLREAILLLKD 331


>gi|114319167|ref|YP_740850.1| chromosomal replication initiation protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122312809|sp|Q0ACS7|DNAA_ALHEH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|114225561|gb|ABI55360.1| chromosomal replication initiator protein DnaA [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 451

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 82/232 (35%), Gaps = 28/232 (12%)

Query: 38  ISRDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANI-----WSDKS 88
            + D  +   + + A       +++ P      + L G  G GK+ L +         + 
Sbjct: 120 FTFDTFVEGKSNQLARAASMQVVEN-PGTAYNPLFLYGGVGLGKTHLMHAVGNAMLRRRP 178

Query: 89  RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFHII 130
            +      ++   + ++                    +L++DI      +    + FH  
Sbjct: 179 EARVLYLHSERFVADMVKALQHNAINEFKRHYRMVDALLIDDIQFFARKERSQEEFFHTF 238

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++ + +  ++MT   +P         L SR      V I  P+ +    +++       
Sbjct: 239 NALLEGEQQVIMTCDRYPKEVNGLEERLKSRFGWGLTVAIEPPELETRVAILMSKALQEG 298

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +  ++A +I +R+  ++   E  + ++   A   G  IT     E L++ 
Sbjct: 299 VDLPHEVAFFIAKRIRSNIRELEGALRRVVANAQFTGQEITVEFTKEALRDL 350


>gi|86139417|ref|ZP_01057986.1| chromosomal replication initiation protein [Roseobacter sp. MED193]
 gi|85823920|gb|EAQ44126.1| chromosomal replication initiation protein [Roseobacter sp. MED193]
          Length = 472

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 87/263 (33%), Gaps = 35/263 (13%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILV 70
           DK     P +  +            + D+ +V    E A                 ++L 
Sbjct: 116 DKAAAAAPMDTLQAAPLD----PRFTFDNFVVGKPNELAHAAARRVAEGGPVTFNPLVLY 171

Query: 71  GPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDSI------------------LIDTRKP 110
           G  G GK+ L +   W    ++   + +  S +                    L  +   
Sbjct: 172 GGVGLGKTHLMHAIAWEITVQNPSLNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDV 231

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++D+  +   D    + FH  N++   +  ++++A   P         + SRL+   V
Sbjct: 232 LMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLV 291

Query: 168 VKISLPDDDFLEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           V +   D +    ++      +Q     + I   +  ++  R+  ++   E  + ++   
Sbjct: 292 VDLHPTDYELRLGILQTKVQLQQQTYPDLEIADGVLEFLAHRISTNVRVLEGALTRLFAF 351

Query: 223 ALSRGMGITRSLAAEVLKETQQC 245
           A   G  I   L  + L +  + 
Sbjct: 352 ASLVGREIDMDLTQDCLADVLRA 374


>gi|117923319|ref|YP_863936.1| chromosomal replication initiator protein DnaA [Magnetococcus sp.
           MC-1]
 gi|166214679|sp|A0L3I7|DNAA_MAGSM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|117607075|gb|ABK42530.1| chromosomal replication initiator protein DnaA [Magnetococcus sp.
           MC-1]
          Length = 447

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 85/238 (35%), Gaps = 30/238 (12%)

Query: 35  CLGISRDDLLVHSAIEQA---VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88
               + D  +V    +        +   P+     + + G  G GK+ +     ++    
Sbjct: 113 DPRYTFDSFVVGGCNQFVHAAAARVAEAPAAAYNPLFIHGGVGLGKTHVMQAIGNRVLEI 172

Query: 89  -------------------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQL 126
                               S RF  +    ++    +   +L++DI  +        + 
Sbjct: 173 DPDKRVLYISSENFMTQLINSLRFKRVFDFKEN--FRSVDVLLVDDIQFIAGKKATQEEF 230

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++++    ++MTA +FP         L SR     V  +  PD +    ++ K  
Sbjct: 231 FHTFNALYEAKKQIVMTADSFPHEIEHLEERLRSRFGMGLVADMQPPDLETRVAILQKKA 290

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
               + +  ++A ++   ++ ++   E  + ++   A   G  IT +L  E LK+  +
Sbjct: 291 GSEGLRLADEVAFFLADAVQTNVRELEGALIRVSAYASLTGKPITMALVKESLKDIVR 348


>gi|332674313|gb|AEE71130.1| DNA-directed DNA replication initiator protein [Helicobacter pylori
           83]
          Length = 455

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|317178231|dbj|BAJ56020.1| chromosomal replication initiation protein [Helicobacter pylori
           F16]
          Length = 455

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|317013298|gb|ADU83906.1| chromosomal replication initiation protein [Helicobacter pylori
           Lithuania75]
          Length = 455

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|308183628|ref|YP_003927755.1| chromosomal replication initiation protein [Helicobacter pylori
           PeCan4]
 gi|308065813|gb|ADO07705.1| chromosomal replication initiation protein [Helicobacter pylori
           PeCan4]
          Length = 455

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|308062788|gb|ADO04676.1| chromosomal replication initiation protein [Helicobacter pylori
           Cuz20]
          Length = 455

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|208435392|ref|YP_002267058.1| chromosomal replication initiator protein [Helicobacter pylori G27]
 gi|226735816|sp|B5Z9E3|DNAA_HELPG RecName: Full=Chromosomal replication initiator protein DnaA
 gi|208433321|gb|ACI28192.1| chromosomal replication initiator protein [Helicobacter pylori G27]
          Length = 455

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|188528299|ref|YP_001910986.1| chromosomal replication initiation protein [Helicobacter pylori
           Shi470]
 gi|226735817|sp|B2UVS4|DNAA_HELPS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|188144539|gb|ACD48956.1| chromosomal replication initiation protein [Helicobacter pylori
           Shi470]
          Length = 455

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNQTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|325478855|gb|EGC81965.1| chromosomal replication initiator protein DnaA [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 459

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 91/248 (36%), Gaps = 41/248 (16%)

Query: 6   EDYSFFVP-DKQKNDQPKNKEEQLFFSFPRCLGIS---RDDLLVHSAIEQAVRLIDSWPS 61
           E+Y+  +   K  +   + +  Q+  SFPR         ++ +   + + A+ +  +   
Sbjct: 88  ENYNKVLTLGKDYDSNGQMRINQVT-SFPRPQLEDENIFENFVEGKSNQYALGVSQAVAQ 146

Query: 62  WPSRV--------VILVGPSGSGKSCLANIWS-----------------DKSRSTRFSNI 96
             S          + + G SG GK+ L    +                 +K  +   + +
Sbjct: 147 NISNKSQARLYNPLFIYGESGLGKTHLMQAIAHEILDNRDDAYVMYLSSEKFTNEMIAAL 206

Query: 97  AKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVS 150
             + +    +  + V   L++DI  +   +    + FH  N ++     +++++   P  
Sbjct: 207 RSTKNEKFREKYRSVDILLIDDIQFIAGKEGTQEEFFHTFNDLYNTGKQIVISSDRPPKE 266

Query: 151 WGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME--- 206
               L D L SR     +V I  PD +    ++ K       +ID ++  YI + ++   
Sbjct: 267 IK-RLEDRLVSRFSWGIIVDIGKPDFETRVAILQKKLDQLGAYIDNEILFYIAENIDTNI 325

Query: 207 RSLVFAEK 214
           R L  A  
Sbjct: 326 RDLEGALS 333


>gi|313112577|ref|ZP_07798238.1| replication initiator protein DnaA [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310625099|gb|EFQ08393.1| replication initiator protein DnaA [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 440

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 38/263 (14%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVV 67
            V  +Q    P + +    F+F        ++ +   + + A     +    PS     +
Sbjct: 89  VVLAQQYEANPASPQGNYEFTF--------ENFIKGPSNQFAFAAAQAVAANPSGAYNPL 140

Query: 68  ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSIL---IDT 107
            + G SG GK+ L                      ++  +   + I              
Sbjct: 141 FIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRV 200

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI  +   +    + FH  NS+H     +++ +             L +R + 
Sbjct: 201 ADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEW 260

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
                +  PD +    ++ +      + + + +A +I   ++ ++   E  V K++   +
Sbjct: 261 GLTADVQPPDFETRVAIVKRKAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYM 320

Query: 225 SRGMGITRSLA----AEVLKETQ 243
             G+    S+A     ++L ETQ
Sbjct: 321 LEGIQPVISVAQNAIKDILNETQ 343


>gi|295101863|emb|CBK99408.1| chromosomal replication initiator protein DnaA [Faecalibacterium
           prausnitzii L2-6]
          Length = 440

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 38/263 (14%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVV 67
            V  +Q    P + +    F+F        ++ +   + + A     +    PS     +
Sbjct: 89  VVLAQQYEANPASPQGNYEFTF--------ENFIKGPSNQFAFAAAQAVAANPSGAYNPL 140

Query: 68  ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSIL---IDT 107
            + G SG GK+ L                      ++  +   + I              
Sbjct: 141 FIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRV 200

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI  +   +    + FH  NS+H     +++ +             L +R + 
Sbjct: 201 ADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEW 260

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
                +  PD +    ++ +      + + + +A +I   ++ ++   E  V K++   +
Sbjct: 261 GLTADVQPPDFETRVAIVKRKAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYM 320

Query: 225 SRGMGITRSLA----AEVLKETQ 243
             G+    S+A     ++L ETQ
Sbjct: 321 LEGIQPVISVAQNAIKDILNETQ 343


>gi|257437736|ref|ZP_05613491.1| DNA replication initiator protein, ATPase [Faecalibacterium
           prausnitzii A2-165]
 gi|257200043|gb|EEU98327.1| DNA replication initiator protein, ATPase [Faecalibacterium
           prausnitzii A2-165]
          Length = 440

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 38/263 (14%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVV 67
            V  +Q    P + +    F+F        ++ +   + + A     +    PS     +
Sbjct: 89  VVLAQQYEANPASPQGNYEFTF--------ENFIKGPSNQFAFAAAQAVAANPSGAYNPL 140

Query: 68  ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSIL---IDT 107
            + G SG GK+ L                      ++  +   + I              
Sbjct: 141 FIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRV 200

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI  +   +    + FH  NS+H     +++ +             L +R + 
Sbjct: 201 ADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEW 260

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
                +  PD +    ++ +      + + + +A +I   ++ ++   E  V K++   +
Sbjct: 261 GLTADVQPPDFETRVAIVKRKAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYM 320

Query: 225 SRGMGITRSLA----AEVLKETQ 243
             G+    S+A     ++L ETQ
Sbjct: 321 LEGIQPVISVAQNAIKDILNETQ 343


>gi|160944267|ref|ZP_02091496.1| hypothetical protein FAEPRAM212_01776 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444449|gb|EDP21453.1| hypothetical protein FAEPRAM212_01776 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103715|emb|CBL01259.1| chromosomal replication initiator protein DnaA [Faecalibacterium
           prausnitzii SL3/3]
          Length = 440

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 38/263 (14%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVV 67
            V  +Q    P + +    F+F        ++ +   + + A     +    PS     +
Sbjct: 89  VVLAQQYEANPASPQGNYEFTF--------ENFIKGPSNQFAFAAAQAVAANPSGAYNPL 140

Query: 68  ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSIL---IDT 107
            + G SG GK+ L                      ++  +   + I              
Sbjct: 141 FIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRV 200

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI  +   +    + FH  NS+H     +++ +             L +R + 
Sbjct: 201 ADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEW 260

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
                +  PD +    ++ +      + + + +A +I   ++ ++   E  V K++   +
Sbjct: 261 GLTADVQPPDFETRVAIVKRKAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYM 320

Query: 225 SRGMGITRSLA----AEVLKETQ 243
             G+    S+A     ++L ETQ
Sbjct: 321 LEGIQPVISVAQNAIKDILNETQ 343


>gi|296167143|ref|ZP_06849550.1| DNA-directed DNA replication initiator protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897465|gb|EFG77064.1| DNA-directed DNA replication initiator protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 518

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 182 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 240

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 241 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 300

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 301 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 360

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 361 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 413


>gi|282890628|ref|ZP_06299151.1| hypothetical protein pah_c022o239 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499625|gb|EFB41921.1| hypothetical protein pah_c022o239 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 464

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 86/242 (35%), Gaps = 40/242 (16%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS------------WPS 61
            + +   PK     L F        + D  ++  +   A +L+               P+
Sbjct: 94  GQAETAPPKFH---LSFD-QVDPYCTFDQFVISESNLLAHKLLCKITGFDSVSKTFIPPT 149

Query: 62  ---WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI---AKSLDSILIDTRKP----- 110
                   + L G  G+GK+ L    +D  R    S I   A++    ++   +      
Sbjct: 150 SDLAAFNPIYLYGKEGTGKTHLLMATADALRKQGLSAIYTRAETFTEHVVGAIRAGEMST 209

Query: 111 ----------VLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     +L++D+           +LFH  N++H     +++++   P    +  P 
Sbjct: 210 FRQAYRNIDVLLIDDVHVFSRKGATQEELFHTFNTLHLSGKQIVLSSHCLPGDLQLIEPR 269

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR +   V+ +   +    ++++ +        ++ K++ Y+++    S     K ++
Sbjct: 270 LVSRFEWGIVLPLESLNIQEKQEMLSRKARAFNYLLNPKVSQYLLETFTSSTKALVKALE 329

Query: 218 KM 219
            +
Sbjct: 330 AL 331


>gi|308232614|ref|ZP_07416626.2| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu001]
 gi|308369280|ref|ZP_07417156.2| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu002]
 gi|308371505|ref|ZP_07425168.2| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu003]
 gi|308371555|ref|ZP_07425297.2| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu004]
 gi|308372785|ref|ZP_07429832.2| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu005]
 gi|308378519|ref|ZP_07482837.2| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu009]
 gi|308379669|ref|ZP_07487069.2| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu010]
 gi|308380868|ref|ZP_07491286.2| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu011]
 gi|308213439|gb|EFO72838.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu001]
 gi|308328156|gb|EFP17007.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu002]
 gi|308328618|gb|EFP17469.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu003]
 gi|308336273|gb|EFP25124.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339879|gb|EFP28730.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu005]
 gi|308352300|gb|EFP41151.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu009]
 gi|308356303|gb|EFP45154.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu010]
 gi|308360190|gb|EFP49041.1| chromosomal replication initiator protein dnaA [Mycobacterium
           tuberculosis SUMu011]
          Length = 496

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 160 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 218

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 219 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 278

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 279 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 338

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 339 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 391


>gi|331086957|ref|ZP_08336033.1| chromosomal replication initiator protein dnaA [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330409618|gb|EGG89057.1| chromosomal replication initiator protein dnaA [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 456

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 39/249 (15%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V      A      +   P      + L G  G GK+ L +     I  +
Sbjct: 111 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHFILEN 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------------PVLLEDIDLLDFND-- 123
           +         +++  + LI+  K                      +L++DI  +   +  
Sbjct: 171 EPEKKVLYVTSETFTNELIEAIKNGKTGNESAMTAFREKYRSIDVLLIDDIQFIIGKEST 230

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N +H     +++++   P         L SR +   V  IS PD +    ++
Sbjct: 231 QEEFFHTFNHLHISGKQIIISSDKPPKDIETLEARLRSRFECGLVADISSPDYETRMAIL 290

Query: 183 VKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM--GITRSLAAE 237
            K      +    I   +  YI   ++ ++   E  ++K+  +AL +     I  +LAAE
Sbjct: 291 RKKEELDGLDKYNIPDAVMQYIASNVKSNIRELEGSLNKL--IALYKLKNAPIDINLAAE 348

Query: 238 VLKETQQCD 246
            LK+    +
Sbjct: 349 ALKDIVSPN 357


>gi|325663383|ref|ZP_08151833.1| chromosomal replication initiator protein dnaA [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325470837|gb|EGC74067.1| chromosomal replication initiator protein dnaA [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 452

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 39/249 (15%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V      A      +   P      + L G  G GK+ L +     I  +
Sbjct: 111 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHFILEN 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------------PVLLEDIDLLDFND-- 123
           +         +++  + LI+  K                      +L++DI  +   +  
Sbjct: 171 EPEKKVLYVTSETFTNELIEAIKNGKTGNESAMTAFREKYRSIDVLLIDDIQFIIGKEST 230

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N +H     +++++   P         L SR +   V  IS PD +    ++
Sbjct: 231 QEEFFHTFNHLHISGKQIIISSDKPPKDIETLEARLRSRFECGLVADISSPDYETRMAIL 290

Query: 183 VKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM--GITRSLAAE 237
            K      +    I   +  YI   ++ ++   E  ++K+  +AL +     I  +LAAE
Sbjct: 291 RKKEELDGLDKYNIPDAVMQYIASNVKSNIRELEGSLNKL--IALYKLKNAPIDINLAAE 348

Query: 238 VLKETQQCD 246
            LK+    +
Sbjct: 349 ALKDIVSPN 357


>gi|25026557|ref|NP_736611.1| chromosomal replication initiation protein [Corynebacterium
           efficiens YS-314]
 gi|38257617|sp|Q8FUL7|DNAA_COREF RecName: Full=Chromosomal replication initiator protein DnaA
 gi|23491836|dbj|BAC16811.1| putative chromosomal replication initiator protein DnaA
           [Corynebacterium efficiens YS-314]
          Length = 573

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 94/251 (37%), Gaps = 30/251 (11%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73
           +     N   ++  +       + ++ ++      A     +    P++    + + G S
Sbjct: 220 RETPAHNPNREVSLN----PKYTFENFVIGPFNRFANAAAVAVAESPAKAFNPLFISGGS 275

Query: 74  GSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----------VLL 113
           G GK+ L +       +     R   ++        ++S+  D ++           +++
Sbjct: 276 GLGKTHLLHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRNLDILMV 335

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  L   +    + FH  N++HQ +  +++++   P         L +R +   +  I
Sbjct: 336 DDIQFLAGKEGTQEEFFHTFNALHQAEKQIILSSDRPPRQLTTLEDRLRTRFEGGLITDI 395

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             PD +    +++K        +D+++   I  R E S+   E  + ++   +      I
Sbjct: 396 QPPDLETRIAILMKKAQADGTHVDREVLELIASRFESSIRELEGALIRVSAYSSLINQPI 455

Query: 231 TRSLAAEVLKE 241
            + +A   L++
Sbjct: 456 DKEMAIVALRD 466


>gi|210614348|ref|ZP_03290167.1| hypothetical protein CLONEX_02381 [Clostridium nexile DSM 1787]
 gi|210150692|gb|EEA81701.1| hypothetical protein CLONEX_02381 [Clostridium nexile DSM 1787]
          Length = 461

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 85/251 (33%), Gaps = 41/251 (16%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
               + D  +V      A      +   P      + L G  G GK+ L +  +      
Sbjct: 114 NPKYTFDTFVVGGNNNFAHAASLAVSESPGEIYNPLFLYGGVGLGKTHLMHSIAHFILEK 173

Query: 87  ----------------------KSRSTRFSN-IAKSLDSILIDTRKPVLLEDIDLLDFND 123
                                 KS  T   N +A +           +L++D+  +   +
Sbjct: 174 DPTKKVLYVTSETFTNELIEALKSGKTSGGNELAMTAFREKYRNIDVLLIDDVQFIIGKE 233

Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + FH  N +H     +++++   P         L +R +   +  IS PD +    
Sbjct: 234 STQEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPDYETRMA 293

Query: 181 VIVKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM--GITRSLA 235
           ++ K      +    I  ++  YI   ++ ++   E  ++K+  +AL +     I   LA
Sbjct: 294 ILRKKEELDGLQKYHISNEVMQYIATNVKSNIRELEGSLNKL--IALHKLKNEEINIMLA 351

Query: 236 AEVLKETQQCD 246
           AE LK+    +
Sbjct: 352 AEALKDIVSPN 362


>gi|259508311|ref|ZP_05751211.1| chromosomal replication initiator protein DnaA [Corynebacterium
           efficiens YS-314]
 gi|259164129|gb|EEW48683.1| chromosomal replication initiator protein DnaA [Corynebacterium
           efficiens YS-314]
          Length = 566

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 94/251 (37%), Gaps = 30/251 (11%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73
           +     N   ++  +       + ++ ++      A     +    P++    + + G S
Sbjct: 213 RETPAHNPNREVSLN----PKYTFENFVIGPFNRFANAAAVAVAESPAKAFNPLFISGGS 268

Query: 74  GSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----------VLL 113
           G GK+ L +       +     R   ++        ++S+  D ++           +++
Sbjct: 269 GLGKTHLLHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRNLDILMV 328

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  L   +    + FH  N++HQ +  +++++   P         L +R +   +  I
Sbjct: 329 DDIQFLAGKEGTQEEFFHTFNALHQAEKQIILSSDRPPRQLTTLEDRLRTRFEGGLITDI 388

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             PD +    +++K        +D+++   I  R E S+   E  + ++   +      I
Sbjct: 389 QPPDLETRIAILMKKAQADGTHVDREVLELIASRFESSIRELEGALIRVSAYSSLINQPI 448

Query: 231 TRSLAAEVLKE 241
            + +A   L++
Sbjct: 449 DKEMAIVALRD 459


>gi|108563812|ref|YP_628128.1| chromosomal replication initiation protein [Helicobacter pylori
           HPAG1]
 gi|123246872|sp|Q1CRG8|DNAA_HELPH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|107837585|gb|ABF85454.1| chromosomal replication initiator protein [Helicobacter pylori
           HPAG1]
          Length = 455

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           QI + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 QIILPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNASIDLNLAKTVLEDLQK 342


>gi|315654389|ref|ZP_07907297.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii
           ATCC 51333]
 gi|315491424|gb|EFU81041.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii
           ATCC 51333]
          Length = 483

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 81/235 (34%), Gaps = 26/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D  ++ S+      A   + + P+     + + G  G GK+ L +         
Sbjct: 143 NPTYTFDSFVIGSSNSFTAAAAESVVASPAKAYNPLFIYGGPGLGKTHLLHAIGNYALEL 202

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFNDTQL---FH 128
                     S++  +   + IA    +      + V   L++DI  L   +  L   FH
Sbjct: 203 YPDSKVKYISSEEFTNEFINAIASQTFAEFQARYREVDFLLIDDIQFLAGKEQTLEEFFH 262

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     +++T+   P         + SRL+   +  I  P  +    ++ +    
Sbjct: 263 TFNTLHTAQKQVVITSDVAPKELKGFEERVRSRLEWGLMADIQPPSLETRIAILRRKAQA 322

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             + +   +A +I   ++  +   E  + ++        +  T   A   +++  
Sbjct: 323 GNMQMPDDVAEFIASNVDSDIRALEGALIRVTAYWSLNHVPATIETAKLAIRDLM 377


>gi|75906226|ref|YP_320522.1| chromosomal replication initiation protein [Anabaena variabilis
           ATCC 29413]
 gi|123745335|sp|Q3MHA9|DNAA_ANAVT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|75699951|gb|ABA19627.1| chromosomal replication initiator protein, DnaA [Anabaena
           variabilis ATCC 29413]
          Length = 460

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 36/247 (14%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSC 79
           N+  Q           SR   +V +    A     +    P R    + L G  G GK+ 
Sbjct: 109 NQNRQPNTELNAKYVFSR--FVVGANNRMAHAASLAVAESPGREFNPLFLCGGVGLGKTH 166

Query: 80  LANI-----WSDKSRSTRFSNIAKSLDSILI---------------DTRKPVLLEDIDLL 119
           L        W     S  F    +   + LI                    +L++DI  +
Sbjct: 167 LMQAIGHYRWEICPDSKIFYVSTEQFTNDLITAIRNDSMQSFREHYRAADVLLVDDIQFI 226

Query: 120 DFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           +  +    + FH  N++H+    +++ +   P         LCSR     +  I  PD +
Sbjct: 227 EGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSMGLIADIQAPDLE 286

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR----GMGITR 232
               ++ K     +I + + +  YI      ++   E  + +    AL+     G+ +T 
Sbjct: 287 TRMAILQKKSEYEKIRLPRDVIEYIATNFTSNIRELEGALTR----ALAYISIWGLPMTV 342

Query: 233 SLAAEVL 239
           +  A VL
Sbjct: 343 ANLAPVL 349


>gi|291446132|ref|ZP_06585522.1| chromosomal replication initiator protein dnaA [Streptomyces
           roseosporus NRRL 15998]
 gi|291349079|gb|EFE75983.1| chromosomal replication initiator protein dnaA [Streptomyces
           roseosporus NRRL 15998]
          Length = 625

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 287 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 346

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 347 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 406

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +      +  P+ +    ++ K   
Sbjct: 407 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 465

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 466 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 520


>gi|256374161|ref|YP_003097821.1| chromosomal replication initiation protein [Actinosynnema mirum DSM
           43827]
 gi|255918464|gb|ACU33975.1| chromosomal replication initiator protein DnaA [Actinosynnema mirum
           DSM 43827]
          Length = 577

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 94/252 (37%), Gaps = 32/252 (12%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPS 73
           +   P + + +L          + D  ++ ++      A   +   P+     + + G S
Sbjct: 217 RPANPASSQTRL------NEKYNFDTFVIGASNRFAHAAAVAVAEAPARAYNPLFIWGES 270

Query: 74  GSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK--------------PVLL 113
           G GK+ L +     ++        R+ +  +  +  +   R                +L+
Sbjct: 271 GLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDVLLV 330

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  L+  +    + FH  N++H  +  +++++   P         L +R +   +  I
Sbjct: 331 DDIQFLEGKEGTQEEFFHTFNTLHNSNKQIVVSSDRPPKRLETLEDRLRTRFEWGLITDI 390

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             P+ +    ++ K  A  ++    ++  +I  R+ R++   E  + ++   A      +
Sbjct: 391 QPPELETRIAILRKKAAQDRLAAPAEVLEFIAARVVRNIRELEGALIRVTAFASLNRQPV 450

Query: 231 TRSLAAEVLKET 242
              LA  VL++ 
Sbjct: 451 DVQLAEIVLRDL 462


>gi|308064285|gb|ADO06172.1| chromosomal replication initiation protein [Helicobacter pylori
           Sat464]
          Length = 455

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHAIQ 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNQTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342


>gi|22298146|ref|NP_681393.1| chromosomal replication initiation protein [Thermosynechococcus
           elongatus BP-1]
 gi|38257592|sp|Q8DL93|DNAA_THEEB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|22294325|dbj|BAC08155.1| chromosomal replication initiator protein [Thermosynechococcus
           elongatus BP-1]
          Length = 453

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 34/240 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
                    +V      A     +    P R    + L G  G GK+ L           
Sbjct: 114 NPKYVFSRYVVGPNNRMAHAACLAVAESPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEI 173

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     +++  +   + I K       +  + V   L++DI  ++  +    + FH
Sbjct: 174 DPNAKIFYVSTEQFTNDLIAAIRKDSMQSFREHYRAVDVMLVDDIQFIEGKEYTQEEFFH 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++ +   P         LCSR     +  I  PD +    ++ K    
Sbjct: 234 TFNTLHEAGKQVVLASDRPPSQIPRLQERLCSRFSMGLIADIQPPDLETRMAILQKKAEY 293

Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             I + +++  YI        R L     + V  +       G+ +T    A VL  T +
Sbjct: 294 ENIRLPREVIEYIAASYTSNIRELEGALIRAVAYIS----ISGLPMTVENIAPVLSPTVR 349


>gi|309804058|ref|ZP_07698139.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LactinV 11V1-d]
 gi|309804898|ref|ZP_07698960.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LactinV 09V1-c]
 gi|309809771|ref|ZP_07703625.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312871204|ref|ZP_07731302.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LEAF 3008A-a]
 gi|312873305|ref|ZP_07733360.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LEAF 2052A-d]
 gi|312874899|ref|ZP_07734918.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LEAF 2053A-b]
 gi|325912307|ref|ZP_08174704.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           UPII 143-D]
 gi|329919771|ref|ZP_08276722.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           SPIN 1401G]
 gi|308163826|gb|EFO66092.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308165837|gb|EFO68058.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308169950|gb|EFO71989.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311089644|gb|EFQ48069.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LEAF 2053A-b]
 gi|311091185|gb|EFQ49574.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LEAF 2052A-d]
 gi|311093218|gb|EFQ51564.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LEAF 3008A-a]
 gi|325475966|gb|EGC79135.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           UPII 143-D]
 gi|328937118|gb|EGG33546.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           SPIN 1401G]
          Length = 453

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 82/238 (34%), Gaps = 26/238 (10%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--- 84
                   + D  +     + A     +    P      + + G  G GK+ L       
Sbjct: 114 DLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQ 173

Query: 85  --SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---T 124
             ++K+ +      +++  +  I++ K                +L++DI      +    
Sbjct: 174 MLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDIQFFAKKEGIQE 233

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH   +++     ++MT+   P         L SR      V+I+ PD +    ++ K
Sbjct: 234 EFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRK 293

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                 + ID     Y+  +++ ++   E  + K+   A      I  +LA E L + 
Sbjct: 294 KAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQAHATIEREDINLNLAKEALADL 351


>gi|261838801|gb|ACX98567.1| chromosomal replication initiator protein [Helicobacter pylori 51]
          Length = 455

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L +  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTEFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPIDLNLAKTVLEDLQK 342


>gi|297621234|ref|YP_003709371.1| Chromosomal replication initiator protein dnaA [Waddlia
           chondrophila WSU 86-1044]
 gi|297376535|gb|ADI38365.1| Chromosomal replication initiator protein dnaA [Waddlia
           chondrophila WSU 86-1044]
          Length = 466

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 90/275 (32%), Gaps = 47/275 (17%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---------------DSW 59
           K KN  P      L F        + D  +   +   A +L+               +  
Sbjct: 98  KVKNIPPAFT---LAFD-ELDPLFTFDHFIPSESNLLAHKLLFKTTNYDPISSQVVSNPS 153

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV-------- 111
                  + L G  G+GK+ L    +     +    +    ++  +     +        
Sbjct: 154 ELASFNPIFLFGGKGTGKTHLLMATAHAINCSHKKALYVRSETFTVHVVSAIRAGEMSLF 213

Query: 112 ----------LLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                     L++D+ L         +LFH  N++H     ++++A   P       P L
Sbjct: 214 RQAYRSVDVLLIDDVHLFSKKWATQEELFHTFNALHLAGKQIILSANCAPQELQHIEPRL 273

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SR +   V+ ++    + + KVI +        +  K+  ++++    +       ++ 
Sbjct: 274 ISRFEWGIVLPLNPLPKEDMRKVIQRKAKAFDTQLHPKVEEFLLEMFSSTTNSIAAALES 333

Query: 219 MD---NLALSRGM----GITRSLAAEVLKETQQCD 246
           +    +L +         IT  LA  +LK+  + +
Sbjct: 334 LLMRHHLRMREQKKASAPITVQLAKHLLKDLIEKE 368


>gi|254442816|ref|ZP_05056292.1| chromosomal replication initiator protein DnaA [Verrucomicrobiae
           bacterium DG1235]
 gi|198257124|gb|EDY81432.1| chromosomal replication initiator protein DnaA [Verrucomicrobiae
           bacterium DG1235]
          Length = 461

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
               + ++ ++ S  + A      +   P+     + L G +G GK+ L +     I ++
Sbjct: 126 NPRNTFENFVIGSNSQLAHAASIAVAHAPAGAYNPLFLYGETGLGKTHLMHAVGHHILAN 185

Query: 87  KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128
           +  +      ++   +  I                    +L++D+  L   +    + FH
Sbjct: 186 RPEARVVYLSSEKFTNEFISAIQENTLTKFRQRYRNVDVLLIDDVQFLSGKERIQEEFFH 245

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N + +    + +++             L SR +   V  I  PD +    ++ K    
Sbjct: 246 TFNDLFESQKQIFLSSDRPANEIAKLESRLVSRFQWGLVTDIQAPDFETRVAILRKKALQ 305

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               I  ++  +I + + +++   E  + K+ + +      +  ++  ++L + 
Sbjct: 306 HNYDISDEVLHFIAKHIVKNIRRLEGALIKVCSYSSLTNKPLNIAICEQLLSDV 359


>gi|182437493|ref|YP_001825212.1| chromosomal replication initiation protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|226735850|sp|B1VPF0|DNAA_STRGG RecName: Full=Chromosomal replication initiator protein DnaA
 gi|178466009|dbj|BAG20529.1| putative replication initiator protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 622

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 284 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 343

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 344 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 403

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +      +  P+ +    ++ K   
Sbjct: 404 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 462

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 463 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 517


>gi|260904981|ref|ZP_05913303.1| chromosomal replication initiator protein DnaA [Brevibacterium
           linens BL2]
          Length = 544

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 84/238 (35%), Gaps = 31/238 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI---WSDKS 88
               + D  ++ ++   A     +           + + G SG GK+ L +    ++ + 
Sbjct: 200 NPKYTFDTFVIGASNRFAHAAAFAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGYYATQL 259

Query: 89  -------------------RSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123
                               +   S  + SL        + V   +++DI  L   D   
Sbjct: 260 FPEIRVKYVSSEEFVNDFINTIGSSKTSNSLRPAFQRRYREVDILMIDDIQFLQGKDATV 319

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++H     +++T+   P         L SR +   +  +  PD +    ++ 
Sbjct: 320 EEFFHTFNALHNEVKQVVITSDQPPKMLKGFEERLRSRFEWGLLTDVQPPDMETRFAILR 379

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +  A  Q+ +   +  YI  R+  ++   E  + ++   A      +  SLA  VLK+
Sbjct: 380 RKAAGEQLDVPNDVLEYIASRISSNIRELEGALIRVTAFANLNDQQVDVSLAETVLKD 437


>gi|11132615|sp|Q9ZH75|DNAA_STRCH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|3800785|gb|AAD08807.1| DNA replication initiator protein [Streptomyces anulatus]
          Length = 624

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 286 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 345

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 346 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 405

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +      +  P+ +    ++ K   
Sbjct: 406 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 464

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 465 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 519


>gi|254818679|ref|ZP_05223680.1| chromosomal replication initiation protein [Mycobacterium
           intracellulare ATCC 13950]
          Length = 511

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 175 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 233

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 234 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 293

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 294 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 353

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 354 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 406


>gi|323141437|ref|ZP_08076327.1| chromosomal replication initiator protein DnaA
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414093|gb|EFY04922.1| chromosomal replication initiator protein DnaA
           [Phascolarctobacterium sp. YIT 12067]
          Length = 459

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 36/260 (13%)

Query: 21  PKNKEEQLFFSFPR----------CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVV 67
           P  +E+Q  F+                   +  ++ ++      A + + + P+     +
Sbjct: 100 PAKREQQQLFNENTSVQQPDESNLNPKYVFETFVIGNSNRFAHAAAQAVANDPAHAYNPL 159

Query: 68  ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK- 109
            L G  G GK+ L +                   S+K  +   ++I            + 
Sbjct: 160 FLYGGVGLGKTHLMHAIGNRIKQNNPSMKVLYTSSEKFTNEIINSIQNKTTEAFRQKYRN 219

Query: 110 --PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              ++++DI  L   +    + FH  N++   D  +++++   P         L SR   
Sbjct: 220 IDCLIIDDIQFLKGKEQTQVEFFHTFNALKDADKQIIISSDRPPREIETLEDRLRSRFDQ 279

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
                I  PD +    ++    A   I +  ++   +   +  ++   E   +K+     
Sbjct: 280 GLTADIQTPDLETRMAILRTKAASDNIVLPTEVITLLATNIATNIREIEGAYNKIVAYTS 339

Query: 225 SRGMGITRSLAAEVLKETQQ 244
              M IT   A +VL +   
Sbjct: 340 LMHMPITVETAQKVLSDMGN 359


>gi|227873171|ref|ZP_03991462.1| DNA-directed DNA replication initiator protein [Oribacterium sinus
           F0268]
 gi|227841002|gb|EEJ51341.1| DNA-directed DNA replication initiator protein [Oribacterium sinus
           F0268]
          Length = 381

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 92/256 (35%), Gaps = 34/256 (13%)

Query: 20  QPKNKEEQLFFSFPRCLG-----ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVG 71
             KN+EEQ                + D  +V S+   A     +    P      + + G
Sbjct: 23  PKKNQEEQPGLEEALKNANLNSRYTFDSFVVGSSNALAHAACVAAAEMPGEQYNPLYIYG 82

Query: 72  PSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK----------------- 109
            +G GK+ L       I      +      +++  +  +D+ +                 
Sbjct: 83  GAGLGKTHLMQSVAHYILQQNKNAKIRYVTSETFINEFVDSIRNKNNISPAEFRRKYREL 142

Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI  L   +    + FH  N+++     +++ +   P         L SR +  
Sbjct: 143 DVLLIDDIQFLIGKEGTQEEFFHTFNALYDNRKQIIIASDKPPKKIDNIEERLLSRFEVG 202

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             V I LPD +    ++ K        ID ++  YI   ++ ++   E  + K+   +  
Sbjct: 203 LTVDIQLPDVETRMAILRKKEELEGYNIDNEVIKYIADNIKSNVRELEGALTKVVAKSRL 262

Query: 226 RGMGITRSLAAEVLKE 241
               +T SLA E+LK+
Sbjct: 263 IKQPVTLSLAEELLKD 278


>gi|227508127|ref|ZP_03938176.1| DNA-directed DNA replication initiator protein [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227192356|gb|EEI72423.1| DNA-directed DNA replication initiator protein [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 469

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 26/232 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + D+ ++    + A     ++   P      +   G  G GK+ L     +K    
Sbjct: 135 NPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLYNPLFFYGGVGLGKTHLMQAIGNKRLED 194

Query: 88  ---SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FNDTQLFH 128
              +     ++ A + D I                    ++++DI           + FH
Sbjct: 195 HPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFAQKEGTQEEFFH 254

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++  D  +++T+   P         L SR      V I+ PD +    ++      
Sbjct: 255 TFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAILKSKAKL 314

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             + I  +  +YI  ++  ++   E  + ++   +  +   IT  L  E LK
Sbjct: 315 DNLTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKNEPITTDLVYEALK 366


>gi|227523339|ref|ZP_03953388.1| DNA-directed DNA replication initiator protein [Lactobacillus
           hilgardii ATCC 8290]
 gi|227089530|gb|EEI24842.1| DNA-directed DNA replication initiator protein [Lactobacillus
           hilgardii ATCC 8290]
          Length = 469

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 26/232 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + D+ ++    + A     ++   P      +   G  G GK+ L     +K    
Sbjct: 135 NPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLYNPLFFYGGVGLGKTHLMQAIGNKRLED 194

Query: 88  ---SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FNDTQLFH 128
              +     ++ A + D I                    ++++DI           + FH
Sbjct: 195 HPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFAQKEGTQEEFFH 254

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++  D  +++T+   P         L SR      V I+ PD +    ++      
Sbjct: 255 TFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAILKSKAKL 314

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             + I  +  +YI  ++  ++   E  + ++   +  +   IT  L  E LK
Sbjct: 315 DNLTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKNEPITTDLVYEALK 366


>gi|331700396|ref|YP_004397355.1| chromosomal replication initiator protein DnaA [Lactobacillus
           buchneri NRRL B-30929]
 gi|329127739|gb|AEB72292.1| Chromosomal replication initiator protein dnaA [Lactobacillus
           buchneri NRRL B-30929]
          Length = 449

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 78/232 (33%), Gaps = 26/232 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + D+ ++    + A     ++   P      +   G  G GK+ L     +K    
Sbjct: 115 NPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLYNPLFFYGGVGLGKTHLMQAIGNKRLED 174

Query: 88  ---SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FNDTQLFH 128
              +     ++ A + D I                    ++++DI           + FH
Sbjct: 175 HPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRDVDILMVDDIQFFAQKEGTQEEFFH 234

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++  D  +++T+   P         L SR      V I+ PD +    ++      
Sbjct: 235 TFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAILKNKAKL 294

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             + I     +YI  +++ ++   E  + ++   +  +   IT  L  E L+
Sbjct: 295 DNLVIPNDTLSYIAGQIDSNVRELEGALSRVQAYSKLKDEPITTDLVYEALR 346


>gi|158311868|ref|YP_001504376.1| chromosomal replication initiator protein DnaA [Frankia sp.
           EAN1pec]
 gi|158107273|gb|ABW09470.1| chromosomal replication initiator protein DnaA [Frankia sp.
           EAN1pec]
          Length = 527

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 90/257 (35%), Gaps = 28/257 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVIL 69
           P +      ++   +             +  ++  +         +    P      + +
Sbjct: 165 PGRMAPGLGRDPSPRPSEPARLNPRYLFETFVIGDSNRFPHAAAVAVAEAPAKAYNPLFI 224

Query: 70  VGPSGSGKSCLANI---------------------WSDKSRSTRFSNIAKSLDSILIDTR 108
            G SG GK+ L +                      +++   ++   +   +      D  
Sbjct: 225 YGDSGLGKTHLLHAIGHYTVKLYPESKIKYVSMEEFTNDFIASIRDDRQLAFQRRYRD-I 283

Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI  L+  +    + FH  N +H  +  +++++   P         L SR +  
Sbjct: 284 DVLLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDRSPKQLSALEDRLRSRFEWG 343

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  ++ PD +    ++ K  A  ++ +   +  YI   +ER++   E  + ++   A  
Sbjct: 344 LITDVTPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASL 403

Query: 226 RGMGITRSLAAEVLKET 242
               + R+LA  VL++ 
Sbjct: 404 NKSHVDRTLAEIVLRDL 420


>gi|288916710|ref|ZP_06411085.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f]
 gi|288351965|gb|EFC86167.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f]
          Length = 515

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 89/256 (34%), Gaps = 26/256 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVIL 69
           P +      ++   +             +  ++  +         +    P      + +
Sbjct: 153 PGRVSPGLGRDPSPRPSEPARLNPRYLFETFVIGDSNRFPHAAAVAVAEAPAKAYNPLFI 212

Query: 70  VGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRK 109
            G SG GK+ L +           +SR    S    + D I                   
Sbjct: 213 YGDSGLGKTHLLHAIGHYTVKLYPESRIKYVSMEEFTNDFIASIRDDRQLAFQRRYRDID 272

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI  L+  +    + FH  N +H  +  +++++   P         L SR +   
Sbjct: 273 VLLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDRSPKQLAALEDRLRSRFEWGL 332

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  ++ PD +    ++ K  A  ++ +   +  YI   +ER++   E  + ++   A   
Sbjct: 333 ITDVTPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASLN 392

Query: 227 GMGITRSLAAEVLKET 242
              + R+LA  VL++ 
Sbjct: 393 KSHVDRTLAEIVLRDL 408


>gi|282880759|ref|ZP_06289455.1| chromosomal replication initiator protein DnaA [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305293|gb|EFA97357.1| chromosomal replication initiator protein DnaA [Prevotella
           timonensis CRIS 5C-B1]
          Length = 470

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 82/251 (32%), Gaps = 31/251 (12%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           + +QL  +       + ++ +   +        + + +         + + GPSG GK+ 
Sbjct: 124 QPQQLDPNL--NPHQTFNNYIEGDSNKLPRSVGLSIAEHPRKTQFNPMFVYGPSGCGKTH 181

Query: 80  L---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID- 117
           L                     A ++  +  +    N           T   ++++DI  
Sbjct: 182 LINAIGMRTKQLYAQKRVLYVSARLFQVQYTNAVLQNSINDF-INFYQTIDLLIVDDIQE 240

Query: 118 --LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
                      FHI N + +    +++ +   PV        L +R     + ++  P+ 
Sbjct: 241 WMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNERLLTRFSCGLIAELEKPNV 300

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
                ++        + I + +  +I +    S+   E +++ +   ++     +   LA
Sbjct: 301 QLCIDILNSKIRKDGLQILEDVVQFIAETANGSVRDLEGVINSLLAYSVVYNSTVDMRLA 360

Query: 236 AEVLKETQQCD 246
             V++   + D
Sbjct: 361 QRVIQRAVKID 371


>gi|260429115|ref|ZP_05783092.1| chromosomal replication initiator protein DnaA [Citreicella sp.
           SE45]
 gi|260419738|gb|EEX12991.1| chromosomal replication initiator protein DnaA [Citreicella sp.
           SE45]
          Length = 556

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 83/244 (34%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P     + D  +V    E A                 + L G  G GK+ L +  +   R
Sbjct: 215 PLDARFTFDSFIVGKPNELAHAAAKRVAEGGQVTFNPLFLYGGVGLGKTHLMHAIAWDLR 274

Query: 90  STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126
           + R       L +                     L  +   ++++D+  +   D    + 
Sbjct: 275 NHRPDLNVLYLSAEQFMYRFVQALRERRMMDFKELFRSVDVLMVDDVQFIAGKDSTQEEF 334

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL++  VV +   D +    ++    
Sbjct: 335 FHTFNALVDQNKQIIISADRAPDEIKDLENRIRSRLQSGLVVDLHPTDYELRLGILQSKV 394

Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            + +     + +D  +  ++  R+  ++   E  + ++   A   G  IT  L  + L +
Sbjct: 395 QNYRLQYPSLQLDDGILEFLAHRISTNVRVLEGALTRLFAFASLVGQPITMELTQDCLAD 454

Query: 242 TQQC 245
             + 
Sbjct: 455 VLRA 458


>gi|227511152|ref|ZP_03941201.1| DNA-directed DNA replication initiator protein [Lactobacillus
           buchneri ATCC 11577]
 gi|227085634|gb|EEI20946.1| DNA-directed DNA replication initiator protein [Lactobacillus
           buchneri ATCC 11577]
          Length = 469

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 26/232 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + D+ ++    + A     ++   P      +   G  G GK+ L     +K    
Sbjct: 135 NPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLYNPLFFYGGVGLGKTHLMQAIGNKRLED 194

Query: 88  ---SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FNDTQLFH 128
              +     ++ A + D I                    ++++DI           + FH
Sbjct: 195 HPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFAQKEGTQEEFFH 254

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++  D  +++T+   P         L SR      V I+ PD +    ++      
Sbjct: 255 TFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAILKSKAKL 314

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             + I  +  +YI  ++  ++   E  + ++   +  +   IT  L  E LK
Sbjct: 315 DNLTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKSEPITTDLVYEALK 366


>gi|302552694|ref|ZP_07305036.1| chromosomal replication initiator protein DnaA [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470312|gb|EFL33405.1| chromosomal replication initiator protein DnaA [Streptomyces
           viridochromogenes DSM 40736]
          Length = 663

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 325 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 384

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 385 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 444

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 445 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 503

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 504 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 558


>gi|256786613|ref|ZP_05525044.1| chromosomal replication initiation protein [Streptomyces lividans
           TK24]
          Length = 641

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 89/236 (37%), Gaps = 28/236 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
           R      D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS
Sbjct: 302 RNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARS 361

Query: 91  ------TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLF 127
                  R+ +  +  +  +   R                +L++DI  L   +    + F
Sbjct: 362 LYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFF 421

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           H  N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K  
Sbjct: 422 HTFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 480

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 481 VQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 536


>gi|291280548|ref|YP_003497383.1| chromosome replication initiator protein DnaA [Deferribacter
           desulfuricans SSM1]
 gi|290755250|dbj|BAI81627.1| chromosome replication initiator protein DnaA [Deferribacter
           desulfuricans SSM1]
          Length = 443

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 80/231 (34%), Gaps = 27/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLAN------------ 82
            + D+ +V ++   A     +           + + G  G GK+ L +            
Sbjct: 111 YTFDNFVVGNSNNFAHAACMAVADGYFHTYNPLFIYGGVGLGKTHLMHAVGNRLLEKFPK 170

Query: 83  -----IWSDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIIN 131
                I S+   +   S +         +  +    +L +D+  L        + F+  N
Sbjct: 171 LRVLYISSENFTNEMISALKSKKMDEFREKYRKVDVLLFDDVQFLAGKQRSTEEFFYTFN 230

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           S++     +++T+   P         L +R     +  I  P  +    +++K      I
Sbjct: 231 SLYDSQKQIILTSDKTPAEIPEMEERLTTRFAWGLIADIQPPSVEEKTAILMKRAELMNI 290

Query: 192 FIDKKLAAYIVQRM-ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +++K+A +I + +   ++      + ++   +   G  IT  LA + L  
Sbjct: 291 DLNEKVALFIAENLKSDNVRELIGALIRLSAYSSFNGEPITIELAKKTLDR 341


>gi|145294043|ref|YP_001136864.1| chromosomal replication initiation protein [Corynebacterium
           glutamicum R]
 gi|166201881|sp|A4Q9R9|DNAA_CORGB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|140843963|dbj|BAF52962.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 524

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 93/251 (37%), Gaps = 30/251 (11%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73
           +     N   ++  +       + +  ++      A     +    P++    + + G S
Sbjct: 171 RETPAHNPNREVSLN----PKYTFESFVIGPFNRFANAAAVAVAESPAKAFNPLFISGGS 226

Query: 74  GSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----------VLL 113
           G GK+ L +       +     R   ++        ++S+  D ++           +++
Sbjct: 227 GLGKTHLLHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQETFKRRYRNLDILMV 286

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  L   +    + FH  N++HQ D  +++++   P         L +R +   +  I
Sbjct: 287 DDIQFLAGKEGTQEEFFHTFNALHQADKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDI 346

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             PD +    +++K        +D+++   I  R E S+   E  + ++   +      I
Sbjct: 347 QPPDLETRIAILMKKAQTDGTHVDREVLELIASRFESSIRELEGALIRVSAYSSLINQPI 406

Query: 231 TRSLAAEVLKE 241
            + +A   L++
Sbjct: 407 DKEMAIVALRD 417


>gi|19551251|ref|NP_599253.1| chromosomal replication initiation protein [Corynebacterium
           glutamicum ATCC 13032]
 gi|62388893|ref|YP_224295.1| chromosomal replication initiation protein [Corynebacterium
           glutamicum ATCC 13032]
 gi|38257663|sp|Q8NUD8|DNAA_CORGL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|21322765|dbj|BAB97394.1| ATPase involved in DNA replication initiation [Corynebacterium
           glutamicum ATCC 13032]
 gi|41324226|emb|CAF18566.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 524

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 93/251 (37%), Gaps = 30/251 (11%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73
           +     N   ++  +       + +  ++      A     +    P++    + + G S
Sbjct: 171 RETPAHNPNREVSLN----PKYTFESFVIGPFNRFANAAAVAVAESPAKAFNPLFISGGS 226

Query: 74  GSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----------VLL 113
           G GK+ L +       +     R   ++        ++S+  D ++           +++
Sbjct: 227 GLGKTHLLHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQETFKRRYRNLDILMV 286

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  L   +    + FH  N++HQ D  +++++   P         L +R +   +  I
Sbjct: 287 DDIQFLAGKEGTQEEFFHTFNALHQADKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDI 346

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             PD +    +++K        +D+++   I  R E S+   E  + ++   +      I
Sbjct: 347 QPPDLETRIAILMKKAQTDGTHVDREVLELIASRFESSIRELEGALIRVSAYSSLINQPI 406

Query: 231 TRSLAAEVLKE 241
            + +A   L++
Sbjct: 407 DKEMAIVALRD 417


>gi|320547711|ref|ZP_08041996.1| DNA-directed DNA replication initiator protein [Streptococcus
           equinus ATCC 9812]
 gi|320447786|gb|EFW88544.1| DNA-directed DNA replication initiator protein [Streptococcus
           equinus ATCC 9812]
          Length = 451

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 86/267 (32%), Gaps = 36/267 (13%)

Query: 14  DKQKNDQPKNKEEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-- 64
            KQ   +P ++  Q                  + D+ +       A     +    P   
Sbjct: 85  AKQAVAKPTSQVLQAPKKSNLPQVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTT 144

Query: 65  -RVVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILI 105
              + + G  G GK+ L N   +                              +++ +  
Sbjct: 145 YNPLFIWGGPGLGKTHLLNAIGNAVLQNNPKARVKYITAENFINEFVIHIRLDTMEELKE 204

Query: 106 DTRKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
             R    +L++DI  L          + F+  N+++  +  +++T+   P         L
Sbjct: 205 KFRNLDVLLIDDIQSLAKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRL 264

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            +R K    + I+ PD +    ++     +      +    Y+  + + ++   E  +  
Sbjct: 265 VTRFKWGLTINITPPDFETRVAILTNKTQEYDFVFPQDTIEYLAGQFDSNVRDLEGALKD 324

Query: 219 MD-NLALSRGMGITRSLAAEVLKETQQ 244
           +    ++ +   IT  +AAE ++  +Q
Sbjct: 325 ISLVASIKKAKTITVDIAAEAIRARKQ 351


>gi|54021965|ref|YP_116207.1| putative replication initiator protein [Nocardia farcinica IFM
           10152]
 gi|61212513|sp|Q5Z3Z8|DNAA_NOCFA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|54013473|dbj|BAD54843.1| putative replication initiator protein [Nocardia farcinica IFM
           10152]
          Length = 662

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 96/262 (36%), Gaps = 34/262 (12%)

Query: 9   SFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           ++F  +++    P N    L          + +  ++ ++   A     +    P+R   
Sbjct: 305 TYFAKNQESTPAPANSSASL------NAKYTFETFVIGASNRFAHAAAVAIAEAPARAYN 358

Query: 67  -VILVGPSGSGKSCLANIWSDKSRSTRFSNI---AKSLDSILIDTRKPV----------- 111
            + + G SG GK+ L +  +       F  +     S +    D    +           
Sbjct: 359 PLFVWGASGLGKTHLLHA-AGHYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRR 417

Query: 112 -------LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                  L++DI  ++  +    + FH  N++H  +  +++++   P         L +R
Sbjct: 418 YRETDILLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTR 477

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            +   +  +  P+ +    ++ K     ++ +   +   I  R+ER++   E  + ++  
Sbjct: 478 FEWGLITDVQPPELETRIAILRKKARMDRLDVPHDVLELIASRVERNIRELEGALIRVTA 537

Query: 222 LALSRGMGITRSLAAEVLKETQ 243
            A   G  +  SLA  VL++  
Sbjct: 538 FASLNGQPLDLSLAEVVLRDLM 559


>gi|81251084|gb|ABB69884.1| DNA replication initiator protein [Nitrosospira sp. NIJS18]
          Length = 476

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 86/255 (33%), Gaps = 33/255 (12%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILV 70
           +  K  + KN               + +  +   A + A          P        + 
Sbjct: 128 NNIKEKREKNPSR-------LNPSFTFNTFVTGKANQLARAGAIQVAECPGVAYNPFFIY 180

Query: 71  GPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID-------TRKP 110
           G  G GK+ L     +                    S++ ++      D       +   
Sbjct: 181 GGVGLGKTHLIQAIGNLVLEHNPGAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSLDL 240

Query: 111 VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI           + F+  N++ +    +++T  ++P         L SR      
Sbjct: 241 LLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEISGMEERLISRFGWGLT 300

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V +  P+ +    +++K  +   I +D+ +A +I + +  ++   E  + ++   +   G
Sbjct: 301 VAVEPPELEMRVAILLKKASMEAIMLDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTG 360

Query: 228 MGITRSLAAEVLKET 242
             +T  LA E LK+ 
Sbjct: 361 HALTLDLAREALKDL 375


>gi|81251080|gb|ABB69881.1| DNA replication initiator protein [Nitrosospira sp. NIJS16]
          Length = 476

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 86/255 (33%), Gaps = 33/255 (12%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILV 70
           +  K  + KN               + +  +   A + A          P        + 
Sbjct: 128 NNIKEKREKNPSR-------LNPSFTFNTFVTGKANQLARAGAIQVAECPGVAYNPFFIY 180

Query: 71  GPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID-------TRKP 110
           G  G GK+ L     +                    S++ ++      D       +   
Sbjct: 181 GGVGLGKTHLIQAIGNLVLEHNPGAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSLDL 240

Query: 111 VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI           + F+  N++ +    +++T  ++P         L SR      
Sbjct: 241 LLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEISGMEERLISRFGWGLT 300

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V +  P+ +    +++K  +   I +D+ +A +I + +  ++   E  + ++   +   G
Sbjct: 301 VAVEPPELEMRVAILLKKASMEAIMLDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTG 360

Query: 228 MGITRSLAAEVLKET 242
             +T  LA E LK+ 
Sbjct: 361 HALTLDLAREALKDL 375


>gi|295837757|ref|ZP_06824690.1| DNA-directed DNA replication initiator protein [Streptomyces sp.
           SPB74]
 gi|295826662|gb|EFG64970.1| DNA-directed DNA replication initiator protein [Streptomyces sp.
           SPB74]
          Length = 632

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 301 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYARSL 360

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 361 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 420

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 421 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 479

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 480 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 534


>gi|226952830|ref|ZP_03823294.1| DNA replication initiator protein [Acinetobacter sp. ATCC 27244]
 gi|294648702|ref|ZP_06726162.1| DNA-directed DNA replication initiator protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226836451|gb|EEH68834.1| DNA replication initiator protein [Acinetobacter sp. ATCC 27244]
 gi|292825377|gb|EFF84120.1| DNA-directed DNA replication initiator protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 466

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 99/266 (37%), Gaps = 35/266 (13%)

Query: 4   MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPS 61
           +K++     P +  N  PK +  QL          +    +   + + A           
Sbjct: 108 IKKEADLVQPSQNANKIPKKR--QL------NPLFTFSLFVEGRSNQMAAETCRKVLTQL 159

Query: 62  WPSRV--VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR------ 108
             S+   + L GP+G GK+ L           K  +      ++S     + +       
Sbjct: 160 GASQHNPLFLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVE 219

Query: 109 ---------KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                      +L++DI LL   +  L   F+  N++      +++T+  +P       P
Sbjct: 220 EFKKNCRSLDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDP 279

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR      V +  PD +   ++++K   +  + + +  A +I Q++  ++   E  +
Sbjct: 280 RLVSRFSWGLSVGVEPPDIETRIEILLKKAENSGVDLPRNCALFIAQQVVANVRELEGAL 339

Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242
           +K+  ++  +G  I   +  E LK+ 
Sbjct: 340 NKVVAISRFKGTAIDLDVVRESLKDV 365


>gi|111219506|ref|YP_710300.1| chromosomal replication initiator protein [Frankia alni ACN14a]
 gi|111147038|emb|CAJ58685.1| Chromosomal replication initiator protein [Frankia alni ACN14a]
          Length = 534

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 92/267 (34%), Gaps = 36/267 (13%)

Query: 12  VPDKQKNDQPKNKEEQL---FFSFPRCLGISR-------DDLLVHSAIEQAVRLIDSWPS 61
            PD  ++  P      L             +R       +  ++  +         +   
Sbjct: 161 FPDSAESTPPMRVGAGLGRDAAPLETEPAQARLNPRYVFETFVIGDSNRFPHAAAVAVAE 220

Query: 62  WP---SRVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI------ 105
            P      + + G SG GK+ L +            +R    S+   + D I        
Sbjct: 221 APAKAYNPLFIYGDSGLGKTHLLHAIGHYALKLYPNTRVKYVSSEEFTNDFINSIRDDRQ 280

Query: 106 -------DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                       +L++DI  L+  +    + FH  N +H  +  +++++   P       
Sbjct: 281 QAFQRRYRDIDVLLVDDIQFLENKERTQEEFFHTFNVLHDGEKQIVISSDRSPKQLSALE 340

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L SR +   +  I+ PD +    ++ K  A  ++ +   +  YI   +ER++   E  
Sbjct: 341 DRLRSRFEWGLMTDITPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGA 400

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKET 242
           + ++   A      + R+LA  VL++ 
Sbjct: 401 LIRVAAFASLNKSHVDRTLAEIVLRDL 427


>gi|297537198|ref|YP_003672967.1| chromosomal replication initiator protein DnaA [Methylotenera sp.
           301]
 gi|297256545|gb|ADI28390.1| chromosomal replication initiator protein DnaA [Methylotenera sp.
           301]
          Length = 471

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
               + D+ +   A + A          P      + + G  G GK+ L     ++    
Sbjct: 137 NSAFNFDNYVTGRANQLARAAAIQVAENPGTAYNPLFIYGGVGLGKTHLLQAIGNELKKH 196

Query: 88  ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFH 128
                          +++ K+ +    D       +   +L++DI           + F+
Sbjct: 197 NPDAKIRYLHAERYVTDVVKAYEHKAFDEFKRQYHSLDLLLIDDIQFFAKKTRTQEEFFY 256

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS+ +    +++T  T+P         L +R      V +  P+ +    +++K    
Sbjct: 257 AFNSLIEAKKQIVITCDTYPKEIIDVDERLRTRFSWGLTVAVEPPELEMRVAILLKKAEA 316

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A +I +++  S+   E  ++++  +A   G  I   LA + L++ 
Sbjct: 317 VNLNLPEDVAFFIAKQIRSSVRELEGALNRIIAMAKFTGHSIDVHLAKDALRDL 370


>gi|34539881|ref|NP_904360.1| chromosomal replication initiation protein [Porphyromonas
           gingivalis W83]
 gi|188993865|ref|YP_001928117.1| chromosomal replication initiation protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|61212688|sp|Q7MXZ1|DNAA_PORGI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735831|sp|B2RGM5|DNAA_PORG3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|34396192|gb|AAQ65259.1| chromosomal replication initiator protein DnaA [Porphyromonas
           gingivalis W83]
 gi|188593545|dbj|BAG32520.1| chromosomal replication initiator protein DnaA [Porphyromonas
           gingivalis ATCC 33277]
          Length = 473

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 95/262 (36%), Gaps = 33/262 (12%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----V 67
           +P+   + + ++ + QL         ++  +         A  + ++  + P        
Sbjct: 121 MPNAATHSEAQDFDTQL------NSRLNFRNFYQSECNYVARSVAEAIAASPGNTPMNPF 174

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTR------------------FSNIAKSLDSILI--DT 107
            + G SG GK+ L +    + R                      +    +++  +     
Sbjct: 175 FIYGASGVGKTHLCHALGLRVREMHPRLKVLYVSSHLFEMQFTTAARMGTINDFIAFYQQ 234

Query: 108 RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              ++++DI  L          F + N ++     +++T+   PV        L +R+  
Sbjct: 235 VDVLIIDDIQWLIGKKKTQLAFFQVFNHLYMLGKQIVLTSDKPPVDLNGMEERLVTRMAG 294

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
           AT VKI  PD     +++ +      + +D+ +  +I + +  ++   E  +  +   ++
Sbjct: 295 ATCVKIERPDLKLRREILQQRTLQSGVRLDESVLNFIAENVCDNVRELEGTLVSLITNSV 354

Query: 225 SRGMGITRSLAAEVLKETQQCD 246
             G  I  + A  ++++  + +
Sbjct: 355 VVGKEIDLTFAKRIVRQAVRLE 376


>gi|320009750|gb|ADW04600.1| chromosomal replication initiator protein DnaA [Streptomyces
           flavogriseus ATCC 33331]
          Length = 580

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 242 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 301

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 302 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 361

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +      +  P+ +    ++ K   
Sbjct: 362 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 420

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 421 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 475


>gi|254509739|ref|ZP_05121806.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae
           bacterium KLH11]
 gi|221533450|gb|EEE36438.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae
           bacterium KLH11]
          Length = 460

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 87/247 (35%), Gaps = 35/247 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A                 ++L G  G GK+ L +   W  K
Sbjct: 119 PLDARFTFDSFVVGKPNELAHAAARRVSEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 178

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
           ++S   + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 179 TKSPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 238

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++    
Sbjct: 239 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQNKV 298

Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA----AE 237
                    + I   +  ++ QR+  ++   E  + ++   A   G  I   L     A+
Sbjct: 299 QQYSSTYPDLTISDGVLEFLAQRISTNVRVLEGALTRLFAFASLVGREIDMDLTQDCLAD 358

Query: 238 VLKETQQ 244
           VL+ +++
Sbjct: 359 VLRMSER 365


>gi|226362895|ref|YP_002780675.1| chromosomal replication initiation protein [Rhodococcus opacus B4]
 gi|254777911|sp|C1B7S7|DNAA_RHOOB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226241382|dbj|BAH51730.1| chromosomal replication initiator protein DnaA [Rhodococcus opacus
           B4]
          Length = 528

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 86/236 (36%), Gaps = 28/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ S+   A     +    P+R    + + G SG GK+ L +  +      
Sbjct: 190 NAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAYNPLFIWGASGLGKTHLLHA-AGHYAQR 248

Query: 92  RFSNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127
            F  +     S +    D    +                  L++DI  ++  +    + F
Sbjct: 249 LFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVLLVDDIQFIEGKEGIQEEFF 308

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K   
Sbjct: 309 HTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSKKAR 368

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             ++ +   +   I  R+ER++   E  + ++   A      +  +LA  VL++  
Sbjct: 369 MDRLEVPDDVLELIASRIERNIRELEGALIRVTAFASLNRQPLDLTLAEVVLRDLM 424


>gi|254488435|ref|ZP_05101640.1| chromosomal replication initiator protein DnaA [Roseobacter sp.
           GAI101]
 gi|214045304|gb|EEB85942.1| chromosomal replication initiator protein DnaA [Roseobacter sp.
           GAI101]
          Length = 454

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 82/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDK-- 87
           P     S D+ +V    E A                 + L G  G GK+ L +  + +  
Sbjct: 113 PLDARFSFDNFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAQELQ 172

Query: 88  -----------SRSTRFSNIAKSLDS-------ILIDTRKPVLLEDIDLLDFND---TQL 126
                      S         ++L          +  +   ++++D+  +   D    + 
Sbjct: 173 IRKPELNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKDSTQEEF 232

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++    
Sbjct: 233 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQSKV 292

Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +Q     + ++  +  ++  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 293 ETQQKNYPGLEVEAGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREINMDLTQDCLAD 352

Query: 242 TQQC 245
             + 
Sbjct: 353 VLRA 356


>gi|163738134|ref|ZP_02145550.1| chromosomal replication initiation protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388750|gb|EDQ13103.1| chromosomal replication initiation protein [Phaeobacter
           gallaeciensis BS107]
          Length = 475

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 84/244 (34%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A                 ++L G  G GK+ L +   W   
Sbjct: 134 PLDPRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELT 193

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
           +R+   + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 194 ARNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 253

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++  K+
Sbjct: 254 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVDLHPTDYELRLGILQSKV 313

Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               Q    + I   +  ++  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 314 AQQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMELTQDCLAD 373

Query: 242 TQQC 245
             + 
Sbjct: 374 VLRA 377


>gi|255534685|ref|YP_003095056.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340881|gb|ACU06994.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae
           bacterium 3519-10]
          Length = 488

 Score =  101 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 94/287 (32%), Gaps = 56/287 (19%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKE-----------EQLFFSFPRCLGISRDDLLVHSAI 49
           MN+  +  S   P  Q+   P               +++          S D+ +   + 
Sbjct: 110 MNM--KGKSIATPKMQETLPPSFSSNLINPFVVPGMKKINIDSNLKADFSFDNYVEGESN 167

Query: 50  ----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------------------- 83
                 A  +     +     + L G  G GK+ L +                       
Sbjct: 168 KFASTVARSIAKRPGATAFNPLFLYGGYGVGKTHLGHAVGLEVKNSYPDKVVLYLSSEKF 227

Query: 84  ------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIH 134
                  +   + T F+N  + +D         ++++DI  L          FHI + +H
Sbjct: 228 IQQFVSAAKAHKQTEFANFYQMVDV--------LIIDDIQFLSGKKSTQDSFFHIFDYLH 279

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           Q    +++T+   PV        + SR K     +I  PD D   K+IV   +   I + 
Sbjct: 280 QNGKQIILTSDKAPVDILDIQDRIVSRFKWGLSAEIKSPDFDTRRKIIVDKLSRDGIVLT 339

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + +  ++   ++ ++     +++ +   +      ++  L  E + +
Sbjct: 340 EDMLDFLASEVKTNVRELIGVINSVIAYSTVYKSELSLELLKETINK 386


>gi|296137751|ref|YP_003644994.1| chromosomal replication initiator protein DnaA [Tsukamurella
           paurometabola DSM 20162]
 gi|296025885|gb|ADG76655.1| chromosomal replication initiator protein DnaA [Tsukamurella
           paurometabola DSM 20162]
          Length = 490

 Score =  101 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 86/235 (36%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + +  ++ ++   A     +    P+R    + + G SG GK+ L +  +      
Sbjct: 153 NQKYTFETFVIGASNRFAHAAAFAVAEAPARAYNPLFIWGESGLGKTHLLHA-AGHYAQR 211

Query: 92  RFSNI---AKSLDSILIDTRKP------------------VLLEDIDLLDFN---DTQLF 127
            F  +     S +    D                      +L++DI  L+       + F
Sbjct: 212 LFPGMRVKYVSTEEFTNDFINSLKDDRQVQFKQRYRDVDILLVDDIQFLEGKLGIQEEFF 271

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H  +  +++++   P         L +R +   +  +  P+ +    +++K   
Sbjct: 272 HTFNTLHNANKQIVVSSDRPPKQLATLEDRLRTRFEWGLITDVQPPELEIRMAILLKKAQ 331

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +I +   +   I  R++R++   E  + ++   A      +T  LA  VL++ 
Sbjct: 332 MERIHVPHDVLELIATRIDRNIRELEGALIRVTAFASLTQTDVTYELAEMVLRDL 386


>gi|313892203|ref|ZP_07825796.1| chromosomal replication initiator protein DnaA [Dialister
           microaerophilus UPII 345-E]
 gi|313119341|gb|EFR42540.1| chromosomal replication initiator protein DnaA [Dialister
           microaerophilus UPII 345-E]
          Length = 494

 Score =  101 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 102/277 (36%), Gaps = 36/277 (12%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVR-LID 57
           +N+ K      +P  Q   +    +E+  +    P     + +  +  +  E A +  + 
Sbjct: 116 INIPKNSQDIVLPSIQNYSKQTKVKEKPVYKSPNPINTEHTFETFVHGNCNEMAFQSALS 175

Query: 58  SWPSWPS--------RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDT 107
                 +          + + GPSG GK+ L +   +  +  +   S I  S ++   + 
Sbjct: 176 VAQMAVNMEEMDKKMNPLFIYGPSGLGKTHLLHAICNYIRENAPHLSYIFVSSETFTNEL 235

Query: 108 RKPV------------------LLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTART 146
              +                  L++D+      + +  ++F+  N++      +++T+  
Sbjct: 236 IASIKSNSMPKFREKYRNPDYLLIDDVQFFGSKNSSKMEIFNTFNTLFDNKKHIILTSDR 295

Query: 147 FPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
            P      L D + +R  +  +V IS PD +    ++ K      I I  ++  YI + +
Sbjct: 296 TPSDIE-ELEDRIQTRFSSGLIVPISPPDYEICSIILEKRAEKEGINIPSEVINYIAEHI 354

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             ++   +   +K+   A  +   +T   A E LK+ 
Sbjct: 355 NTNVRELDGAFNKLVTYAKVQKKEMTLEFAKETLKDQ 391


>gi|289422504|ref|ZP_06424347.1| chromosomal replication initiator protein DnaA [Peptostreptococcus
           anaerobius 653-L]
 gi|289157076|gb|EFD05698.1| chromosomal replication initiator protein DnaA [Peptostreptococcus
           anaerobius 653-L]
          Length = 460

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 79/236 (33%), Gaps = 28/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWSDK-- 87
               + D  +       A+    S     + +     + L G  G GK+ L      +  
Sbjct: 123 NPKYTFDTFVSGPNNNIALAASLSMAGLNNNLKGKNPLYLYGGVGLGKTHLMQAIGHEII 182

Query: 88  ----SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQL 126
               S+   +       + +++               +   ++++D+           +L
Sbjct: 183 RKDPSKKVLYVTSETFTNDLIMSLKNNTPETFRQKYRSVDVLMVDDVQFFSGKNSTQEEL 242

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N +   +  ++ T+  +P         L SR  +  V  I  P+ +    ++ K  
Sbjct: 243 FHTFNVLQGQNKKIIFTSDKYPKDISGLEDRLTSRFGSGAVFDIQPPEFETRVAILQKKA 302

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            D  + +D  +  YI + ++ ++   E  ++ +   A   G  I    A E LK  
Sbjct: 303 QDENMSVDMDIIYYIAENVKSNIRELEGALNTVSFYASIAGRKIDLDTAREALKNQ 358


>gi|41406099|ref|NP_958935.1| chromosomal replication initiation protein [Mycobacterium avium
           subsp. paratuberculosis K-10]
 gi|13431486|sp|Q9L7L7|DNAA_MYCPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|6969271|gb|AAF33692.1| putative dnaA [Mycobacterium avium subsp. paratuberculosis]
 gi|41394447|gb|AAS02318.1| DnaA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 509

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 173 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 231

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 232 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 291

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 292 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 351

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I +SLA  VL++ 
Sbjct: 352 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDL 404


>gi|238853339|ref|ZP_04643719.1| chromosomal replication initiator protein DnaA [Lactobacillus
           gasseri 202-4]
 gi|238834027|gb|EEQ26284.1| chromosomal replication initiator protein DnaA [Lactobacillus
           gasseri 202-4]
          Length = 454

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 88/265 (33%), Gaps = 35/265 (13%)

Query: 13  PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           P++    +P+ K  Q                    + D  +     + A     +    P
Sbjct: 88  PERLVTPKPRIKTNQEILEDRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 147

Query: 64  SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109
                 + + G  G GK+ L         ++K  +      +++  +  I++ K      
Sbjct: 148 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAE 207

Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     +L++DI      +    + FH   +++     ++MT+   P         
Sbjct: 208 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 267

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      V+I+ PD +    ++ K      + ID     YI  +++ ++   E  + 
Sbjct: 268 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDGSTLDYIASQVDTNIRELEGALV 327

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
           K+   A      I   LA E L + 
Sbjct: 328 KVQAHATIEREDINVDLAKEALADL 352


>gi|254476159|ref|ZP_05089545.1| chromosomal replication initiator protein DnaA [Ruegeria sp. R11]
 gi|214030402|gb|EEB71237.1| chromosomal replication initiator protein DnaA [Ruegeria sp. R11]
          Length = 459

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 84/244 (34%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A                 ++L G  G GK+ L +   W  K
Sbjct: 118 PLDPRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 177

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
            R+   + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 178 DRNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 237

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++  K+
Sbjct: 238 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVDLHPTDYELRLGILQSKV 297

Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               Q    + I   +  ++  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 298 AQQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMELTQDCLAD 357

Query: 242 TQQC 245
             + 
Sbjct: 358 VLRA 361


>gi|254773054|ref|ZP_05214570.1| chromosomal replication initiation protein [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 509

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 173 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 231

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 232 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 291

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 292 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 351

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I +SLA  VL++ 
Sbjct: 352 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDL 404


>gi|145588190|ref|YP_001154787.1| chromosomal replication initiator protein DnaA [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046596|gb|ABP33223.1| chromosomal replication initiator protein DnaA [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 475

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 92/260 (35%), Gaps = 30/260 (11%)

Query: 13  PDKQKNDQPKNKEEQLFFSFP----RCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65
           P  Q    P    E+  F           ++ +  +   A + A      +   P     
Sbjct: 115 PQSQDESSPIISVEEQSFEIEDHSKLNPNLTFETFVTGKANQLARAASIQVAHNPGTSYN 174

Query: 66  VVILVGPSGSGKSCLANIWS-----DKSRST-RFSNIAKSLDSILID------------- 106
            + L G  G GK+ L +        +K  +  R+ +  + +  ++               
Sbjct: 175 PMFLYGGVGLGKTHLIHAIGNHLLKEKPNARIRYIHAEQYVSDVVRAYQQKAFDRFKRYY 234

Query: 107 -TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
            +   +L++DI           + F+   ++    S +++T+ T+P         L SR 
Sbjct: 235 HSLDLLLIDDIQFFSGKSRTQEEFFYAFEALLSNKSQVIITSDTYPKEMAGIDDRLISRF 294

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            +   V I  P+ +    +++K  A   I + + +A ++ + +  ++   E  + K+   
Sbjct: 295 DSGLTVAIEPPELEMRVAILMKKAASEGIPMTEDVAFFVAKHLRSNVRELEGALRKILAF 354

Query: 223 ALSRGMGITRSLAAEVLKET 242
               G  +T  +A   LK+ 
Sbjct: 355 VRFHGREVTIDVARIALKDL 374


>gi|118466558|ref|YP_879304.1| chromosomal replication initiation protein [Mycobacterium avium
           104]
 gi|118167845|gb|ABK68742.1| chromosomal replication initiator protein DnaA [Mycobacterium avium
           104]
          Length = 498

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 162 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 220

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 221 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 280

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 281 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 340

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I +SLA  VL++ 
Sbjct: 341 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDL 393


>gi|163743748|ref|ZP_02151122.1| chromosomal replication initiation protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161383009|gb|EDQ07404.1| chromosomal replication initiation protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 475

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 84/244 (34%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A                 ++L G  G GK+ L +   W   
Sbjct: 134 PLDPRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELT 193

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
           +R+   + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 194 ARNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 253

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++  K+
Sbjct: 254 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVDLHPTDYELRLGILQSKV 313

Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               Q    + I   +  ++  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 314 AQQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMELTQDCLAD 373

Query: 242 TQQC 245
             + 
Sbjct: 374 VLRA 377


>gi|304437932|ref|ZP_07397878.1| DNA-directed DNA replication initiator protein [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369072|gb|EFM22751.1| DNA-directed DNA replication initiator protein [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 483

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 71/223 (31%), Gaps = 27/223 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90
               + +  +   + +    +  +    P       + + G  G GK+ L +    K  +
Sbjct: 147 NPKYTFEAFVTGRSNQFPYAMAKAVADAPGLPSHNPLFIYGGVGLGKTHLMHAVGHKILA 206

Query: 91  ------TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLF 127
                   +       +  +   R+               +L++DI      +   T+ F
Sbjct: 207 DDPKKRVLYIASTDFTNEFIRSIREKNMDAFREKYYHIDVLLIDDIQFFAGQEQTQTEFF 266

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
              N +    S +++T+   P         L SR      V I  P+ +    ++ K   
Sbjct: 267 QTFNKLRDNGSQIILTSDRQPQDVKGLEDRLISRFAGGAPVDIQPPEFETRVAILQKKAQ 326

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
              + I   +  YI  R++ ++   E  + ++   A    M I
Sbjct: 327 SEDVDIPADVVTYIASRVDSNIRELEGALTRLIKYASMMRMPI 369


>gi|225570325|ref|ZP_03779350.1| hypothetical protein CLOHYLEM_06422 [Clostridium hylemonae DSM
           15053]
 gi|225160857|gb|EEG73476.1| hypothetical protein CLOHYLEM_06422 [Clostridium hylemonae DSM
           15053]
          Length = 462

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 46/249 (18%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
               + D  +V      A      +   P      + L G  G GK+ L +  +      
Sbjct: 114 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHFILEK 173

Query: 87  ----------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123
                                 K+  T  +  A S           +L++DI  +   + 
Sbjct: 174 SPKKKVLYVTSETFTNELIDALKNGKTAGNESAMSKFRDKYRNNDVLLIDDIQFIIGKES 233

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N +H     +++++   P         L +R +   +  IS P+ +    +
Sbjct: 234 TQEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISAPNYETRMAI 293

Query: 182 IVKMFADRQIF---IDKKLAAYIVQRME---RSLV-FAEKLVD--KMDNLALSRGMGITR 232
           + K     ++    I + +  YI   ++   R L     KL+   K++N A      I  
Sbjct: 294 LQKKIELDKLEKYNIPQDVIEYIATNIKTNIRELEGSLNKLIALYKLNNNATQ----IDI 349

Query: 233 SLAAEVLKE 241
           +LA+E LK+
Sbjct: 350 TLASEALKD 358


>gi|119025019|ref|YP_908864.1| chromosomal replication initiation protein [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154486346|ref|ZP_02027753.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis
           L2-32]
 gi|118764603|dbj|BAF38782.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084209|gb|EDN83254.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis
           L2-32]
          Length = 499

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 95/292 (32%), Gaps = 55/292 (18%)

Query: 5   KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCL------------------------GISR 40
           +E Y  F P K     P N+  Q     P  +                          + 
Sbjct: 102 EETYPRFSPAKSPAKSPANETMQGQLPIPATMPPEQDHFQSGQNRPLLDPETHLNKNATF 161

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD---------KS 88
           D  +   +   A  +  +           + + G SG GK+ L N   +         K 
Sbjct: 162 DTFVPGDSNRFARTVALAVAEGSGHDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPNLKV 221

Query: 89  RSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLLDFNDTQL---FHI 129
           R              L DT +                 +L++DI  L   D  L   FH 
Sbjct: 222 RYVTSEEFTNEFIEALADTNQSSGQIKEFNRRYREVDVLLIDDIQFLSGKDATLEQFFHT 281

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++HQ +  +++ +   P         L SR ++   V +  PD +    ++  +    
Sbjct: 282 FNTLHQANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPDLETRIAILRMIATMN 341

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              I   +   I +R   ++   E  ++++  +A      +T++LA + L++
Sbjct: 342 GSNIPNDVFNLIAERFTENIRELEGALNRVTAMASLSNQPVTKALAEQTLQD 393


>gi|221229344|ref|YP_002502760.1| chromosomal replication initiation protein [Mycobacterium leprae
           Br4923]
 gi|219932451|emb|CAR70094.1| putative chromosomal replication initiator protein [Mycobacterium
           leprae Br4923]
          Length = 521

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + +  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 185 RYTFETFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 243

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 244 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 303

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 304 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 363

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 364 RLAVPGDVLELIASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDL 416


>gi|307331907|ref|ZP_07611003.1| chromosomal replication initiator protein DnaA [Streptomyces
           violaceusniger Tu 4113]
 gi|306882425|gb|EFN13515.1| chromosomal replication initiator protein DnaA [Streptomyces
           violaceusniger Tu 4113]
          Length = 388

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 89/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 50  NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 109

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 110 YPGTRVRYVSSEEFTNEFINSIRDGKADAFRRRYRDMDILLVDDIQFLASKESTQEEFFH 169

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 170 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 228

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   LA  VLK+ 
Sbjct: 229 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLAEIVLKDL 283


>gi|289770505|ref|ZP_06529883.1| chromosomal replication initiator protein DnaA [Streptomyces
           lividans TK24]
 gi|289700704|gb|EFD68133.1| chromosomal replication initiator protein DnaA [Streptomyces
           lividans TK24]
          Length = 656

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 89/236 (37%), Gaps = 28/236 (11%)

Query: 34  RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
           R      D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS
Sbjct: 317 RNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARS 376

Query: 91  ------TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLF 127
                  R+ +  +  +  +   R                +L++DI  L   +    + F
Sbjct: 377 LYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFF 436

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           H  N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K  
Sbjct: 437 HTFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 495

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 496 VQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 551


>gi|219685250|ref|ZP_03540070.1| chromosomal replication initiator protein DnaA [Borrelia garinii
           Far04]
 gi|219673346|gb|EED30365.1| chromosomal replication initiator protein DnaA [Borrelia garinii
           Far04]
          Length = 485

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++      A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 145 RYTFENFIIGPNNRLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 204

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 205 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 264

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    +I K   +  
Sbjct: 265 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 325 IKVPKDILNLVAQKVTTNVRDLEAAVTKL 353


>gi|219684275|ref|ZP_03539219.1| chromosomal replication initiator protein DnaA [Borrelia garinii
           PBr]
 gi|219672264|gb|EED29317.1| chromosomal replication initiator protein DnaA [Borrelia garinii
           PBr]
          Length = 485

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++      A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 145 RYTFENFIIGPNNRLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 204

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 205 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 264

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    +I K   +  
Sbjct: 265 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 325 IKVPKDILNLVAQKVTTNVRDLEAAVTKL 353


>gi|51598691|ref|YP_072879.1| chromosomal replication initiator protein [Borrelia garinii PBi]
 gi|61212541|sp|Q661I4|DNAA_BORGA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|51573262|gb|AAU07287.1| chromosomal replication initiator protein [Borrelia garinii PBi]
          Length = 484

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++      A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 144 RYTFENFIIGPNNRLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 203

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 204 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 263

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    +I K   +  
Sbjct: 264 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 323

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 324 IKVPKDILNLVAQKVTTNVRDLEAAVTKL 352


>gi|226303490|ref|YP_002763448.1| chromosomal replication initiator protein DnaA [Rhodococcus
           erythropolis PR4]
 gi|229491154|ref|ZP_04384982.1| chromosomal replication initiator protein DnaA [Rhodococcus
           erythropolis SK121]
 gi|259645258|sp|C0ZLE1|DNAA_RHOE4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226182605|dbj|BAH30709.1| chromosomal replication initiator protein DnaA [Rhodococcus
           erythropolis PR4]
 gi|229321892|gb|EEN87685.1| chromosomal replication initiator protein DnaA [Rhodococcus
           erythropolis SK121]
          Length = 520

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 86/236 (36%), Gaps = 28/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ S+   A     +    P+R    + + G SG GK+ L +  +      
Sbjct: 182 NAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAYNPLFIWGASGLGKTHLLHA-AGHYAQR 240

Query: 92  RFSNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127
            F  +     S +    D    +                  L++DI  ++  +    + F
Sbjct: 241 LFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVLLVDDIQFIEGKEGIQEEFF 300

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K   
Sbjct: 301 HTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSKKAR 360

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             ++ +   +   I  R+ER++   E  + ++   A      +  +LA  VL++  
Sbjct: 361 MDRLEVPHDVLELIASRIERNIRELEGALIRVTAFASLNRQPLDLTLAEVVLRDLM 416


>gi|83815237|ref|YP_444159.1| chromosomal replication initiator protein DnaA [Salinibacter ruber
           DSM 13855]
 gi|83756631|gb|ABC44744.1| chromosomal replication initiator protein DnaA [Salinibacter ruber
           DSM 13855]
          Length = 524

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 94/266 (35%), Gaps = 37/266 (13%)

Query: 16  QKNDQPKNKEEQLFFSFP----------RCLGISRDDLLVHSAIEQAVRL---IDSWPSW 62
            + D+      Q  F+ P               + D  +  +    A      I + P  
Sbjct: 157 AEGDEKSAPPVQNPFAIPGLKNAEVDNQLNDSYTFDRFIEGACNRLARSAAHSIATDPGE 216

Query: 63  PS-RVVILVGPSGSGKSCLA-----NIWSDKSRSTRFSNIAKSLDSILIDTR-------- 108
            S    ++ G  G GK+ L      ++ +  +  T F   ++   +  + +         
Sbjct: 217 TSFNPFLVYGGVGLGKTHLIQAIGNHVAARDASKTVFYVSSERFTTEFVQSIQENQIGEF 276

Query: 109 -------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                    ++++D+      +    + FHI N++ Q  + ++++A   P         L
Sbjct: 277 STFYRQVDVLIVDDVQFFGGKEKTQEEFFHIFNALRQAGNQIVLSADRPPREIDGLEERL 336

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SR +      +  P  D    ++ +   D  I +D  +  +I Q +E ++   E  + +
Sbjct: 337 LSRFQWGLSADLKPPGLDTRISILRRKAEDDGIDLDDDVVEFIAQSIESNIRELEGALIR 396

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244
           +   A    + IT  LA EVL +  Q
Sbjct: 397 LLAHATLHQLDITLDLAKEVLHDLFQ 422


>gi|15826866|ref|NP_301129.1| chromosomal replication initiation protein [Mycobacterium leprae
           TN]
 gi|13092413|emb|CAC29509.1| putative chromosomal replication initiator protein [Mycobacterium
           leprae]
          Length = 521

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + +  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 185 RYTFETFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 243

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 244 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 303

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 304 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 363

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 364 RLAVPGDVLELIASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDL 416


>gi|84501260|ref|ZP_00999465.1| chromosomal replication initiation protein [Oceanicola batsensis
           HTCC2597]
 gi|84390551|gb|EAQ03039.1| chromosomal replication initiation protein [Oceanicola batsensis
           HTCC2597]
          Length = 470

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 85/264 (32%), Gaps = 34/264 (12%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVIL 69
           P +     P +   Q     P     + D  +V    E A                 + L
Sbjct: 112 PAQPAKASPMDTMLQAA---PLDPRFTFDRFVVGKPNELAHAAARRVAEAGPVTFNPLFL 168

Query: 70  VGPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDSI------------------LIDTRK 109
            G  G GK+ L +   W  ++     + +  S +                    L  T  
Sbjct: 169 YGGVGLGKTHLMHAIAWELQTHRPDLTVVYLSAEQFMYRFVQAIRERRTMDFKSLFRTVD 228

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            ++++D+  +   D    + FH  N++   +  ++++    P         + SR++   
Sbjct: 229 VLMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISGDRAPGEMTDMEERIRSRMQCGL 288

Query: 167 VVKISLPDDDFLEKVIVKM--FADRQ---IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           +V +   D +    ++         Q   + +   +  ++  R+  ++   E  + ++  
Sbjct: 289 IVDLHPTDYELRLGILQSKVDAQRAQYPDLKLADGVLEFLAHRISTNVRVLEGALTRLFA 348

Query: 222 LALSRGMGITRSLAAEVLKETQQC 245
            +   G  IT  L  E L +  + 
Sbjct: 349 FSSLVGREITLDLTQECLSDILRA 372


>gi|328883703|emb|CCA56942.1| Chromosomal replication initiator protein DnaA [Streptomyces
           venezuelae ATCC 10712]
          Length = 591

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ S+      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 253 NPKYLFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 312

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 313 YPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKESTQEEFFH 372

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +      +  P+ +    ++ K   
Sbjct: 373 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 431

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 432 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 486


>gi|32141219|ref|NP_733620.1| chromosomal replication initiation protein [Streptomyces coelicolor
           A3(2)]
 gi|118710|sp|P27902|DNAA_STRCO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|153240|gb|AAA26734.1| DnaA [Streptomyces coelicolor A3(2)]
 gi|24413863|emb|CAD55464.1| chromosomal replication initiator protein [Streptomyces coelicolor
           A3(2)]
          Length = 656

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 318 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 377

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 378 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 437

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 438 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 496

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 497 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 551


>gi|225352379|ref|ZP_03743402.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156886|gb|EEG70255.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 530

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 34/269 (12%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLG-ISRDDLLVHSAIEQAVRLIDSWPSWPS---R 65
             +P ++ N+  + +   L           + D  +   +   A  +  +          
Sbjct: 163 VVMPPERHNNFQRGQNRPLLDPKTHLNKNATFDTFVPGDSNRFARTVALAVAEGSGHDFN 222

Query: 66  VVILVGPSGSGKSCLANIWSD---------KSRSTRFSNIAKSLDSILIDTR-------- 108
            + + G SG GK+ L N   +         K R              L DT         
Sbjct: 223 PLCIYGGSGLGKTHLLNAIGNYALVKDPTLKVRYVTSEEFTNEFIEALGDTNQNSGQIKE 282

Query: 109 --------KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     +L++DI  L   D  L   FH  N++HQ +  +++ +   P         
Sbjct: 283 FNRRYREVDVLLIDDIQFLSGKDATLEQFFHTFNTLHQANKRIVIASDVPPKDLQGFNER 342

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR ++   V +  PD +    ++  +       +   +   I +R   ++   E  ++
Sbjct: 343 LISRFESGLTVDVKPPDLETRIAILRMIAH--GTNVQDDVLNLIAERFTENIRELEGALN 400

Query: 218 KMDNLALSRGMGITRSLAAEVLKETQQCD 246
           ++  +A   G  +TR+LA + L++    D
Sbjct: 401 RVTAMASLSGQPVTRALAEQTLQDFFSTD 429


>gi|158336233|ref|YP_001517407.1| chromosomal replication initiation protein [Acaryochloris marina
           MBIC11017]
 gi|189044628|sp|B0CDM2|DNAA_ACAM1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|158306474|gb|ABW28091.1| chromosomal replication initiator protein DnaA [Acaryochloris
           marina MBIC11017]
          Length = 455

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 72/224 (32%), Gaps = 34/224 (15%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           +Q   +            +V      A     +    P R    + L G  G GK+ L  
Sbjct: 114 QQASLN----PKYVFSRYVVGPNNRMAHAACLAVAESPGREFNPLFLCGGVGLGKTHLMQ 169

Query: 83  IW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFN 122
                              +++  +   + I K       +  + V   L++DI  ++  
Sbjct: 170 AIGHYRLEISPNSRIFYISTEQFTNDLIAAIRKDGMQKFREHYRAVDVMLVDDIQFIEGK 229

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    + FH  N++H+    +++ +   P         LCSR     +  I  PD +   
Sbjct: 230 EYTQEEFFHTFNTLHEAGKQVVLASDRPPSQIPRLQERLCSRFSMGLIADIQPPDLETRM 289

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKM 219
            ++ K      I + +++  YI        R L     + V  +
Sbjct: 290 AILQKKAEYENIRLPREVIEYIASSYTSNIRELEGALIRAVAYI 333


>gi|239930175|ref|ZP_04687128.1| chromosomal replication initiation protein [Streptomyces ghanaensis
           ATCC 14672]
          Length = 638

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 300 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 359

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 360 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 419

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 420 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 478

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 479 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 533


>gi|300781938|ref|YP_003762229.1| chromosomal replication initiator protein DnaA [Amycolatopsis
           mediterranei U32]
 gi|299791452|gb|ADJ41827.1| chromosomal replication initiator protein DnaA [Amycolatopsis
           mediterranei U32]
          Length = 547

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 90/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
               + D  ++ ++      A   +   P+     + + G SG GK+ L +     ++  
Sbjct: 208 NEKYTFDTFVIGASNRFAHAAAVAVAEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRL 267

Query: 91  -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L+  +    + FH
Sbjct: 268 FPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDILLVDDIQFLEGKEGTQEEFFH 327

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L +R +   +  I  P+ +    ++ K  A 
Sbjct: 328 TFNTLHNANKQIVVSSDRPPKRLETLEDRLRTRFEWGLITDIQPPELETRIAILRKKAAQ 387

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ +  ++  +I  R+E ++   E  + ++   A      +  +LA  VL++ 
Sbjct: 388 DRLAVPGEVLEFIASRVEANIRELEGALIRVTAFASLNQQPVDSALAEIVLRDL 441


>gi|257456142|ref|ZP_05621339.1| chromosomal replication initiator protein DnaA [Treponema vincentii
           ATCC 35580]
 gi|257446228|gb|EEV21274.1| chromosomal replication initiator protein DnaA [Treponema vincentii
           ATCC 35580]
          Length = 464

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 79/233 (33%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + D  ++ +       A   +   P      +++ G  G GK+ L     +     
Sbjct: 128 NERYTFDKFVIDADNPLPANAAIAVSKNPGTAYNPLLIYGGVGLGKTHLMQAIGNALYQN 187

Query: 88  SRSTRFSNIAKSLDSILID---------------TRKPVLLEDI---DLLDFNDTQLFHI 129
           +        A++  +  I                    +LL+DI   +  +    +LFH 
Sbjct: 188 TNLKILYAPAETFTNEYIAHVNKNKMHEFKNKYRNADVLLLDDIHFLEKKEGTQEELFHT 247

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++++ +  ++ T              L SR      + + +P  +    ++ K   D 
Sbjct: 248 FNALYESNKQIVFTCDRPVEELKNLTDRLRSRFTRGLSIDLKIPSYETRCAILFKKLQDE 307

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              I  ++   I + +  ++   E  + K++  +      IT   A  +L++T
Sbjct: 308 HFSIPDEVVHLIAKNVSSNVRDLESALTKLEAYS-ELTGPITLENAQRLLQDT 359


>gi|153811986|ref|ZP_01964654.1| hypothetical protein RUMOBE_02379 [Ruminococcus obeum ATCC 29174]
 gi|149831885|gb|EDM86971.1| hypothetical protein RUMOBE_02379 [Ruminococcus obeum ATCC 29174]
          Length = 459

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 87/241 (36%), Gaps = 29/241 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86
                 D  +V +  + A     +    P      + + G +G GK+ L +     I   
Sbjct: 119 NPKYIFDTFIVGNNNKFAQAAALAVAESPGDTYNPLFIYGGAGLGKTHLMHSIAHYIIEH 178

Query: 87  KSRSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQ 125
              S      ++   + LI+T +                   +L++DI  +   +    +
Sbjct: 179 DENSKVLYVTSEEFTNELIETIRNGNNSAMSKFREKYRNIDVLLVDDIQFIIGKESTQEE 238

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+H     +++++   P    +      SR +   +  I+LPD +    ++ K 
Sbjct: 239 FFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDYETRMAILHKK 298

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                  I +++  YI   ++ ++   E   +K+   +      +T  LA + LK+    
Sbjct: 299 EELEGYNISEEVIKYIATNIKSNIRELEGAFNKVMASSKLEKKEVTLELAEQALKDIISP 358

Query: 246 D 246
           D
Sbjct: 359 D 359


>gi|91200553|emb|CAJ73602.1| similar to replication initiation protein DnaA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 495

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 81/238 (34%), Gaps = 29/238 (12%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAV----RLI-DSWPSWPSRVVILVGPSGSGKSCLA-NIW 84
           +     G+  +D ++      A      +I + +P  P   + + G  G GK+ L   IW
Sbjct: 155 ALGLNKGLLLEDFVIGPNNRLAYTAALEMIKEEYP--PFNPLFIHGNVGVGKTHLLVGIW 212

Query: 85  -----SDKSRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FND 123
                     +   S    + + I    +                L++D+  L       
Sbjct: 213 NRVRKEQTVNAVYMSAEKWTNEFIYALQKGKMESFRQRYRNVDVFLIDDVHFLSNKQGVQ 272

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +  H  N+++     ++  +   P        +L SR  +  V +I  P+      ++ 
Sbjct: 273 EEFLHTFNALYDSSKRIIFASDAHPKQISQLKENLASRFMSGMVARIERPEYATRLLILR 332

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              +   ++  ++   YI ++ + S+   E  +  +   A      I  +   +VLKE
Sbjct: 333 TKASKYDVYFPEEALEYIAEKFDDSVREVESALVTLTAHARFNDRKIDIAFVKDVLKE 390


>gi|91201685|emb|CAJ74745.1| similar to chromosomal replication initiator protein DnaA
           [Candidatus Kuenenia stuttgartiensis]
          Length = 495

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 81/238 (34%), Gaps = 29/238 (12%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAV----RLI-DSWPSWPSRVVILVGPSGSGKSCLA-NIW 84
           +     G+  +D ++      A      +I + +P  P   + + G  G GK+ L   IW
Sbjct: 155 ALGLNKGLLLEDFVIGPNNRLAYTAALEMIKEEYP--PFNPLFIHGNVGVGKTHLLVGIW 212

Query: 85  -----SDKSRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FND 123
                     +   S    + + I    +                L++D+  L       
Sbjct: 213 NRVRKEQTVNAVYMSAEKWTNEFIYALQKGKMESFRQRYRNVDVFLIDDVHFLSNKQGVQ 272

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +  H  N+++     ++  +   P        +L SR  +  V +I  P+      ++ 
Sbjct: 273 EEFLHTFNALYDSSKRIIFASDAHPKQISQLKENLASRFMSGMVARIERPEYATRLLILR 332

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              +   ++  ++   YI ++ + S+   E  +  +   A      I  +   +VLKE
Sbjct: 333 TKASKYDVYFPEEALEYIAEKFDDSVREVESALVTLTAHARFNDRKIDIAFVKDVLKE 390


>gi|302559666|ref|ZP_07312008.1| chromosomal replication initiator protein DnaA [Streptomyces
           griseoflavus Tu4000]
 gi|302477284|gb|EFL40377.1| chromosomal replication initiator protein DnaA [Streptomyces
           griseoflavus Tu4000]
          Length = 652

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 88/236 (37%), Gaps = 28/236 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 314 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 373

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 374 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 433

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 434 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 492

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+  
Sbjct: 493 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLM 548


>gi|291452646|ref|ZP_06592036.1| chromosomal replication initiator protein dnaA [Streptomyces albus
           J1074]
 gi|291355595|gb|EFE82497.1| chromosomal replication initiator protein dnaA [Streptomyces albus
           J1074]
          Length = 648

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 310 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYARSL 369

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 370 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 429

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 430 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 488

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 489 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 543


>gi|169830220|ref|YP_001716202.1| chromosomal replication initiation protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637064|gb|ACA58570.1| chromosomal replication initiator protein DnaA [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 445

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 32/263 (12%)

Query: 12  VPDKQKN-DQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           VP+ +K   +P +K   L           + D  +V ++   A     +    P +    
Sbjct: 86  VPEVKKYLSRPLDK---LSTDLSALNPKYTFDSFVVGNSNRFAHAAAFAVADTPVKAYNP 142

Query: 67  VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109
           + L G  G GK+ L +                   S++  +   + I            +
Sbjct: 143 LFLYGGVGLGKTHLMHAIGHHILGNHSRYRIAYVTSERFTNDLINAIKDDQTPQFRSKYR 202

Query: 110 PV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
            +   L++DI  L   +    + FH  NS+++    +++++   P         L SR +
Sbjct: 203 SIDILLIDDIQFLAGKERTQEEFFHTFNSLYEDAKQIVISSDRPPKEIPTLEERLRSRFE 262

Query: 164 AATVVKISLPDDDFLEKVIVKMF-ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
              +  I  PD +    ++ K   ++    +  +   YI  R++ ++   E    ++   
Sbjct: 263 WGLITDIQPPDLETRIAILRKKLQSEENSLVPDETILYIADRIQSNIRELEGAFIRVSAY 322

Query: 223 ALSRGMGITRSLAAEVLKETQQC 245
           A      ++   AAE+LK     
Sbjct: 323 ASLNRTIVSPENAAEILKNILPP 345


>gi|30248032|ref|NP_840102.1| dnaA; chromosomal replication initiator protein [Nitrosomonas
           europaea ATCC 19718]
 gi|38257436|sp|Q82Y84|DNAA_NITEU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|30179917|emb|CAD83912.1| dnaA; chromosomal replication initiator protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 459

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 87/253 (34%), Gaps = 32/253 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGP 72
           Q     K    QL          + D  +   A + A      +   P      + + G 
Sbjct: 112 QGVTSRKTNPSQL------NASFTFDAFVTGKANQLARAGAIQVAERPGIAYNPLFIYGG 165

Query: 73  SGSGKSCLANIWS------DKSRSTRFSNIAKSLDSILID--------------TRKPVL 112
            G GK+ L           D     R+ +  K +  ++                +   +L
Sbjct: 166 VGLGKTHLMQAIGNYVLELDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLL 225

Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++D+           + F+  N++ +    +++T+  +P         L SR      V 
Sbjct: 226 VDDVQFFSGKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVA 285

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  P+ +    +++K     +I +D+  A +I + +  ++   E  + ++   +   G  
Sbjct: 286 IEPPELEMRVAILLKKALAEKIELDENTAFFIAKYIRSNVRELEGALKRVLAFSRFTGHS 345

Query: 230 ITRSLAAEVLKET 242
           I+  LA E LK+ 
Sbjct: 346 ISLDLAKEALKDL 358


>gi|14195657|sp|P46388|DNAA_MYCLE RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 502

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
             + +  ++ ++   A     +    P+R    + + G SG GK+ L +  +       F
Sbjct: 166 RYTFETFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 224

Query: 94  SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129
             +     S +    D    +                  L++DI  ++  +    + FH 
Sbjct: 225 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 284

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K     
Sbjct: 285 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 344

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++ +   +   I   +ER++   E  + ++   A      I ++LA  VL++ 
Sbjct: 345 RLAVPGDVLELIASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDL 397


>gi|261884959|ref|ZP_06008998.1| chromosomal replication initiation protein [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 311

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 24/210 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN---IWSDKS 88
               + +  +V  + + A          P +V   + + G +G GK+ L      +  + 
Sbjct: 102 NPSYTFESFVVGDSNQFAYISSQQAAQNPGKVYNPLFIYGSTGLGKTHLLQSIGNYCLEH 161

Query: 89  RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHII 130
             T     ++   S  I   +                +L++DI     ++    + FH  
Sbjct: 162 GKTVICVTSEQFMSDFIRNVENRTMNKFKEKYRNCDILLIDDIQFFHKSEKTQEEFFHTF 221

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N IH     ++MT+   P         L SR +   +  I+ P+ D   ++I        
Sbjct: 222 NEIHAKKGQIVMTSDKPPKMLKGFEERLKSRFEWGLMADITPPELDTKIRIIKAKCEFDG 281

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           I +   +  YI   M  ++   E  +  ++
Sbjct: 282 INLSSDIIEYIATNMGDNIREIESAIININ 311


>gi|306834600|ref|ZP_07467712.1| DNA-directed DNA replication initiator protein [Streptococcus bovis
           ATCC 700338]
 gi|304423236|gb|EFM26390.1| DNA-directed DNA replication initiator protein [Streptococcus bovis
           ATCC 700338]
          Length = 451

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 86/264 (32%), Gaps = 36/264 (13%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68
           VP  QKN  P                 + D+ +       A     +    P      + 
Sbjct: 97  VPTTQKNTLP-------LVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTYNPLF 149

Query: 69  LVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTRKP 110
           + G  G GK+ L N   +                              +++ +    R  
Sbjct: 150 IWGGPGLGKTHLLNAIGNAVLQNNPNARVKYITAENFINEFVIHIRLDTMEELKEKFRNL 209

Query: 111 --VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
             +L++DI  L          + F+  N+++  +  +++T+   P         L +R K
Sbjct: 210 DVLLIDDIQSLAKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFK 269

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NL 222
               + I+ PD +    ++     +      +    Y+  + + ++   E  +  +    
Sbjct: 270 WGLTINITPPDFETRVAILTNKTQEYNYIFPQDTIEYLAGQFDSNVRDLEGALKDISLVA 329

Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246
           ++ +   IT  +AAE ++  +Q D
Sbjct: 330 SIKKIETITVDVAAEAIRARKQDD 353


>gi|289547952|ref|YP_003472940.1| chromosomal replication initiator protein DnaA [Thermocrinis albus
           DSM 14484]
 gi|289181569|gb|ADC88813.1| chromosomal replication initiator protein DnaA [Thermocrinis albus
           DSM 14484]
          Length = 394

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 81/209 (38%), Gaps = 25/209 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + ++ +V  + + A ++       P R    + L G  G GK+ L +   +++++ 
Sbjct: 76  NPRYTFENFVVGPSNQLAYKVCLEVAENPGRSFSPLFLYGSVGLGKTHLLHAIGNRAKTK 135

Query: 92  RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFNDT---QLFHII 130
            +  +  S++    +  K +                  LL+D+  L   +    +LF + 
Sbjct: 136 GYRAMYSSINDFSEEMVKALKEGKIEKFREKYINVDILLLDDVQFLAGKERTQMELFRVF 195

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
             +  ++  +++ +   P         L SR ++  +++I L DD+    VI K   +  
Sbjct: 196 EKLQTFEKQIVLVSDRHPKDLKDVPDRLVSRFESGLLLEIGL-DDETRISVIKKKLMEYG 254

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
              +  + +Y+ +    ++   E  +  M
Sbjct: 255 FSPEDSVVSYVAENTGYNVREIEGFIRTM 283


>gi|84514654|ref|ZP_01002018.1| chromosomal replication initiation protein [Loktanella
           vestfoldensis SKA53]
 gi|84511705|gb|EAQ08158.1| chromosomal replication initiation protein [Loktanella
           vestfoldensis SKA53]
          Length = 447

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--K 87
           P     + D  +V    E A                 + L G  G GK+ L +  +   +
Sbjct: 106 PLDARFTFDTFVVGKPNELAHAAARRVADGGPVTFNPLFLYGGVGLGKTHLMHAIAHELQ 165

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
            RS   + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 166 RRSPELNVLYLSAEQFMYRFITALRERKMMDFKQLFRSVDVLMVDDVQFIAGKDSTQEEF 225

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM- 185
           FH  N++      ++++A   P         + SRL+   VV +   D +    ++    
Sbjct: 226 FHTFNALVDGQKQIIISADRAPGEIKDLEDRIRSRLQCGLVVDLHPTDYELRLGILQSKV 285

Query: 186 ----FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                    + +   +  ++  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 286 DAFSAQYPGLAVAPGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREINLELTQDCLSD 345

Query: 242 TQQC 245
             + 
Sbjct: 346 VLKA 349


>gi|228931507|ref|ZP_04094417.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228828150|gb|EEM73874.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 313

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 79/205 (38%), Gaps = 23/205 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK----- 109
           P+     + + G  G GK+ L +     +      +      ++   +  I++ +     
Sbjct: 7   PAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAV 66

Query: 110 ----------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                      +L++DI  L   +    + FH  N++H+    +++++   P        
Sbjct: 67  DFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLED 126

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SR +   +  I+ PD +    ++ K      + I  ++  YI  +++ ++   E  +
Sbjct: 127 RLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGAL 186

Query: 217 DKMDNLALSRGMGITRSLAAEVLKE 241
            ++   +      I   LAAE L++
Sbjct: 187 IRVVAYSSLINKDINADLAAEALRD 211


>gi|302380126|ref|ZP_07268599.1| chromosomal replication initiator protein DnaA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312068|gb|EFK94076.1| chromosomal replication initiator protein DnaA [Finegoldia magna
           ACS-171-V-Col3]
          Length = 487

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 78/210 (37%), Gaps = 27/210 (12%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRK----- 109
           P+     + + G +G GK+ L +  + +      ++      ++S  + LI +       
Sbjct: 176 PATAYNPLFIHGKAGLGKTHLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTK 235

Query: 110 -------------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         +L++DI  +        + FH  N ++ ++  +++++   P     
Sbjct: 236 KNSQFRQKYRNIDVLLIDDIQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKT 295

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR +   +  I  PD +    ++ +        +  ++  YI   ++ ++   E
Sbjct: 296 LEERLVSRFEWGLMADIQPPDYETRVAIVNEYLDRNNTSLPPEIIDYIAMNVKSNIRELE 355

Query: 214 KLV-DKMDNLALSRGMGITRSLAAEVLKET 242
             V + +    L     IT  LA  VLK+ 
Sbjct: 356 GAVMNVVGQKTLIGDGNITLDLAKNVLKQL 385


>gi|169823698|ref|YP_001691309.1| chromosomal replication initiation protein [Finegoldia magna ATCC
           29328]
 gi|303234453|ref|ZP_07321091.1| chromosomal replication initiator protein DnaA [Finegoldia magna
           BVS033A4]
 gi|167830503|dbj|BAG07419.1| chromosomal replication initiation protein [Finegoldia magna ATCC
           29328]
 gi|302494408|gb|EFL54176.1| chromosomal replication initiator protein DnaA [Finegoldia magna
           BVS033A4]
          Length = 485

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 78/210 (37%), Gaps = 27/210 (12%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRK----- 109
           P+     + + G +G GK+ L +  + +      ++      ++S  + LI +       
Sbjct: 174 PATAYNPLFIHGKAGLGKTHLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTK 233

Query: 110 -------------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         +L++DI  +        + FH  N ++ ++  +++++   P     
Sbjct: 234 KNSQFRQKYRNIDVLLIDDIQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKT 293

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR +   +  I  PD +    ++ +        +  ++  YI   ++ ++   E
Sbjct: 294 LEERLVSRFEWGLMADIQPPDYETRVAIVNEYLDRNNTSLPPEIIDYIAMNVKSNIRELE 353

Query: 214 KLV-DKMDNLALSRGMGITRSLAAEVLKET 242
             V + +    L     IT  LA  VLK+ 
Sbjct: 354 GAVMNVVGQKTLIGDGNITLDLAKNVLKQL 383


>gi|83309735|ref|YP_419999.1| chromosomal replication initiation protein [Magnetospirillum
           magneticum AMB-1]
 gi|82944576|dbj|BAE49440.1| ATPase [Magnetospirillum magneticum AMB-1]
          Length = 477

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 26/239 (10%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P     +  + +V    E A                 + L G  G GK+ L +  +   R
Sbjct: 141 PLDNRFTFKNFVVGKPNEFAWAAARRVAEADQVSFNPLFLYGGVGLGKTHLMHAIAHHIR 200

Query: 90  ST----------------RFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---TQL 126
                             RF    +  D++    +      ++++D+  +   D    + 
Sbjct: 201 ERNPERSVLYLSAEKFMYRFIRALRGQDTMSFKEQFRSVDVLMIDDVQFIAGKDATQEEF 260

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++      ++++A   P         L SR+    V  I     +    ++    
Sbjct: 261 FHTFNALVDQGRQIVISADKSPSDLEGIEERLRSRMACGLVADIHATTYELRLGILHSKA 320

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
               + + +K+  ++  ++  ++   E  ++++   +   G  IT     EVL +  + 
Sbjct: 321 EQMGVLVPQKVMEFLAHKIISNVRELEGALNRVVAHSQLVGRAITLETTQEVLHDLLRA 379


>gi|254507297|ref|ZP_05119433.1| chromosomal replication initiator protein DnaA [Vibrio
           parahaemolyticus 16]
 gi|219549757|gb|EED26746.1| chromosomal replication initiator protein DnaA [Vibrio
           parahaemolyticus 16]
          Length = 278

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   +L++DI      +    + FH  N++ + +  +++T+  +P         L SR  
Sbjct: 39  SVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFG 98

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  P+ +    +++K   D QI +  ++A +I +R+  ++   E  ++++   A
Sbjct: 99  WGLTVAIEPPELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANA 158

Query: 224 LSRGMGITRSLAAEVLKET 242
              G  IT     E L++ 
Sbjct: 159 NFTGRPITIDFVREALRDL 177


>gi|294505817|ref|YP_003569875.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber
           M8]
 gi|294342145|emb|CBH22923.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber
           M8]
          Length = 524

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 37/266 (13%)

Query: 16  QKNDQPKNKEEQLFFSFP----------RCLGISRDDLLVHSAIEQAVRL---IDSWPSW 62
            + D+      Q  F+ P               + D  +       A      I + P  
Sbjct: 157 AEGDEKSAPPVQNPFAIPGLKNAEVDNQLNDSYTFDRFIEGECNRLARSAAHSIATDPGE 216

Query: 63  PS-RVVILVGPSGSGKSCLA-----NIWSDKSRSTRFSNIAKSLDSILIDTR-------- 108
            S    ++ G  G GK+ L      ++ +  +  T F   ++   +  + +         
Sbjct: 217 TSFNPFLVYGGVGLGKTHLIQAIGNHVAARDASKTVFYVSSERFTTEFVQSIQENQIGEF 276

Query: 109 -------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                    ++++D+      +    + FHI N++ Q  + ++++A   P         L
Sbjct: 277 STFYRQVDVLIVDDVQFFGGKEKTQEEFFHIFNALRQAGNQIVLSADRPPREIDGLEERL 336

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SR +      +  P  D    ++ +   D  I +D  +  +I Q +E ++   E  + +
Sbjct: 337 LSRFQWGLSADLKPPGLDTRISILRRKAEDDGIDLDDDVVEFIAQSIESNIRELEGALIR 396

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244
           +   A    + IT  LA EVL +  Q
Sbjct: 397 LLAHATLHQLDITLDLAKEVLHDLFQ 422


>gi|290959004|ref|YP_003490186.1| chromosomal replication initiator protein [Streptomyces scabiei
           87.22]
 gi|260648530|emb|CBG71641.1| chromosomal replication initiator protein [Streptomyces scabiei
           87.22]
          Length = 674

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 336 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 395

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 396 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 455

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 456 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 514

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 515 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 569


>gi|291438517|ref|ZP_06577907.1| chromosomal replication initiator protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341412|gb|EFE68368.1| chromosomal replication initiator protein [Streptomyces ghanaensis
           ATCC 14672]
          Length = 648

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 310 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 369

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 370 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 429

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 430 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 488

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 489 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 543


>gi|227498788|ref|ZP_03928928.1| chromosomal replication initiator protein [Acidaminococcus sp. D21]
 gi|226904240|gb|EEH90158.1| chromosomal replication initiator protein [Acidaminococcus sp. D21]
          Length = 458

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 91/265 (34%), Gaps = 33/265 (12%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
            +    P  ++   PK    Q  FS         ++ ++ ++   A     +    P++V
Sbjct: 96  GHGAAAPKAKEPLIPKKGPRQ-DFSSNLSPKYVFENFVIGNSNRFAHAASKAVAEAPAKV 154

Query: 67  ---VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTR---------- 108
              + L   SG GK+ L N     I  D          +++  + LI++           
Sbjct: 155 YNPLFLYSDSGLGKTHLMNAIGNKIHQDHPEMKILYTSSETFTNELINSIQNNATEAFRN 214

Query: 109 -----KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                  +L++DI  L   +    + FH   ++++ +  +++++   P         L S
Sbjct: 215 KYRNIDVLLIDDIQFLRKKESTQEEFFHTFETLYKAEKQIIISSDRKPSELDTLEERLKS 274

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVD 217
           R     +  I  PD +    ++  M     I +   +   I   +    R L  A   V 
Sbjct: 275 RFTWGLIADIQPPDLETRIAILKNMALKDHISVPDSVTNLIASNISTNIRELEGAYTKVR 334

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
                +      IT  LA E LK+ 
Sbjct: 335 AYSQFS---NEPITEELAIEALKDL 356


>gi|89892747|ref|YP_516234.1| ATPase involved in DNA replication initiation [Desulfitobacterium
           hafniense Y51]
 gi|219666072|ref|YP_002456507.1| chromosomal replication initiator protein DnaA [Desulfitobacterium
           hafniense DCB-2]
 gi|89332195|dbj|BAE81790.1| ATPase involved in DNA replication initiation [Desulfitobacterium
           hafniense Y51]
 gi|219536332|gb|ACL18071.1| chromosomal replication initiator protein DnaA [Desulfitobacterium
           hafniense DCB-2]
          Length = 449

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 28/266 (10%)

Query: 3   LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSW 59
           L+   +    P   +N    N + +   +       + D  ++ ++      A   +   
Sbjct: 81  LVTSIHETTQPGDNQNKASSNSKAEPADNKTLNSKYTFDTFVIGNSNRFAHAAALAVAES 140

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWS----DKSRSTRF----------SNIAKSLDSILI 105
           P+     + + G  G GK+ L +        +S STR             I    D   I
Sbjct: 141 PALAYNPLFIYGGVGLGKTHLMHAIGNAVIQRSPSTRVLYVSSEKFTNELIESIRDQNPI 200

Query: 106 DTRKP------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
           + R        +L++DI  L   +    + FH  N++H  +  +++++   P        
Sbjct: 201 EFRNHYRNVDILLIDDIQFLAGKEGTQEEFFHTFNALHDANKQIIISSDRPPKEIPTLED 260

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE-KL 215
            L SR +   +  I  PD +    ++ K      + +  ++  YI  ++  ++   E  L
Sbjct: 261 RLRSRFEWGLITDIQPPDLETRIAILRKKAKLENLQVANEVMVYIADKIHSNIRELEGAL 320

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKE 241
           +  M   +L+    IT   AAE LK+
Sbjct: 321 IRVMAVGSLTS-NPITVETAAEALKD 345


>gi|254451709|ref|ZP_05065146.1| chromosomal replication initiator protein DnaA [Octadecabacter
           antarcticus 238]
 gi|198266115|gb|EDY90385.1| chromosomal replication initiator protein DnaA [Octadecabacter
           antarcticus 238]
          Length = 454

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 31/242 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  +V    E A                 + L G  G GK+ L +  + +    
Sbjct: 115 DQRFTFDSFVVGKPNELAHAASKRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELGER 174

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
           R   + +  S D  +      +                  +++DI  L+  +    + FH
Sbjct: 175 RPDLNVLYVSADQFIYRFISALRDRKMMDFKQHFRSVDVLMVDDIQFLEGKESTQEEFFH 234

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++      ++++A   P         + SRL+   VV +   D +    ++      
Sbjct: 235 TYNALADQGKQMIISADRAPGEIRDLSERIKSRLQCGLVVDLHPTDYELRLGILHAKQEM 294

Query: 189 -----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                  + I   +  ++  R+  ++   E  ++++  LA   G  +T  +A + L +  
Sbjct: 295 FVNVYPGVEIATGVLEFLAHRISSNVRVLEGALNRLYALASMVGRTVTVEMAQDCLSDIL 354

Query: 244 QC 245
           + 
Sbjct: 355 RA 356


>gi|111020655|ref|YP_703627.1| chromosomal replication initiation protein [Rhodococcus jostii
           RHA1]
 gi|123144805|sp|Q0SAG7|DNAA_RHOSR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|110820185|gb|ABG95469.1| DNA-directed DNA replication initiator protein [Rhodococcus jostii
           RHA1]
          Length = 528

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 86/236 (36%), Gaps = 28/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ S+   A     +    P+R    + + G SG GK+ L +  +      
Sbjct: 190 NAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAYNPLFVWGASGLGKTHLLHA-AGHYAQR 248

Query: 92  RFSNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127
            F  +     S +    D    +                  L++DI  ++  +    + F
Sbjct: 249 LFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVLLVDDIQFIEGKEGIQEEFF 308

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K   
Sbjct: 309 HTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSKKAR 368

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             ++ +   +   I  R+ER++   E  + ++   A      +  +LA  VL++  
Sbjct: 369 MDRLEVPDDVLELIASRIERNIRELEGALIRVTAFASLNRQPLDLTLAEVVLRDLM 424


>gi|153854255|ref|ZP_01995554.1| hypothetical protein DORLON_01548 [Dorea longicatena DSM 13814]
 gi|149753030|gb|EDM62961.1| hypothetical protein DORLON_01548 [Dorea longicatena DSM 13814]
          Length = 462

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 37/249 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
               + D  +V      A      +   P      + L G  G GK+ L +  +      
Sbjct: 115 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHFILDK 174

Query: 87  ----------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123
                                 K+  T  +  A S           +L++DI  +   + 
Sbjct: 175 NPKKKVLYVTSETFTNELIEALKNGKTAGNESAMSKFRDKYRNNDVLLIDDIQFIIGKES 234

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N +H     +++++   P         L +R +   +  IS P+ +    +
Sbjct: 235 TQEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPNYETRMAI 294

Query: 182 IVKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGITRSLAAE 237
           + K      +    I   +  YI   ++ ++   E  ++K+     L+    I  +LAAE
Sbjct: 295 LQKKIELDHLEKYNIPNDVLEYIATNVKTNIRELEGSLNKLIALYKLNNTGSIDIALAAE 354

Query: 238 VLKETQQCD 246
            LK+    D
Sbjct: 355 ALKDIISSD 363


>gi|119485656|ref|ZP_01619931.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106]
 gi|119456981|gb|EAW38108.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106]
          Length = 452

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 86/259 (33%), Gaps = 37/259 (14%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69
           P  Q+   P         +       SR   +V +    A     +    P R    + L
Sbjct: 104 PSNQRLKPP---------NLNSKYVFSR--FVVGANSRLAHAAALAVAESPGREFNPLFL 152

Query: 70  VGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKP-- 110
            G  G GK+ L                     ++K  +   + I K       D  +   
Sbjct: 153 CGGVGLGKTHLMQAIGHYRIEINPDAKVFYVSTEKFTNDLIAAIRKDSMQSFRDHYRAAD 212

Query: 111 -VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI  ++  +    + FH  N++H+    +++ +   P         LCSR     
Sbjct: 213 VLLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPNQIPRLQERLCSRFSMGL 272

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           V  I  PD +    ++ K      + + + +  YI  R   ++   E  + +        
Sbjct: 273 VADIQPPDLETRMAILQKKAEYENVRLSEGVVEYIASRYTSNIRELEGALIRAVAYTSIS 332

Query: 227 GMGITRSLAAEVLKETQQC 245
           G+ +T    A VL   +Q 
Sbjct: 333 GLPMTVESIAPVLSPAEQP 351


>gi|103485499|ref|YP_615060.1| chromosomal replication initiation protein [Sphingopyxis alaskensis
           RB2256]
 gi|122984662|sp|Q1GN68|DNAA_SPHAL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|98975576|gb|ABF51727.1| chromosomal replication initiator protein DnaA [Sphingopyxis
           alaskensis RB2256]
          Length = 453

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 89/250 (35%), Gaps = 45/250 (18%)

Query: 32  FPRCLGISRDDLLVHSAI------EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
                 +S D  +V  +        + + +++     P   + L   +G GK+ L    +
Sbjct: 115 LGFDPRLSFDRFVVARSNILAANAARRMAMVERPQFNP---LYLCSGTGQGKTHLLQAIA 171

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---------------------- 123
               +      A    +I++ + +  +LE +  +   D                      
Sbjct: 172 QDYAA------AHPTATIILMSAEKFMLEFVGAMRGGDMMAFKARLRAADLLLLDDLQFV 225

Query: 124 -------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                   +L H I+ +      L++TA   P         L SRL    V  I  P+DD
Sbjct: 226 IGKNSTQEELLHTIDDLMTAGKRLVVTADRPPAMLDGVEARLLSRLSGGLVADIEAPEDD 285

Query: 177 FLEKVIV-KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
             E++I  ++ A   + +   + A++V+   R++   E  ++K+   A   G  I   LA
Sbjct: 286 LRERIIRQRLAAMPMVEVPDDVIAWLVKHFTRNIRELEGALNKLLAYAALTGARIDLMLA 345

Query: 236 AEVLKETQQC 245
            + L E  + 
Sbjct: 346 EDRLAENVRS 355


>gi|296127870|ref|YP_003635120.1| chromosomal replication initiator protein DnaA [Cellulomonas
           flavigena DSM 20109]
 gi|296019685|gb|ADG72921.1| chromosomal replication initiator protein DnaA [Cellulomonas
           flavigena DSM 20109]
          Length = 534

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILV 70
           D    D P  +   L            +  ++ S+      A   +   P+     + + 
Sbjct: 175 DGSSYDAPAPR-RGLSEPARLNPKYRFETFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIY 233

Query: 71  GPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRKP-------------- 110
           G SG GK+ L +     +++       R+ N  +  +  +    +               
Sbjct: 234 GDSGLGKTHLLHAIGHYAQNLYPTVRVRYVNSEEFTNDFINSIGEGKAGAFQRRYREVDV 293

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L   +    + FH  N++H     +++T+   P         + SR +   +
Sbjct: 294 LLIDDIQFLQGKEQTMEEFFHTFNTLHNASKQVVITSDVPPKQLNGFEDRMRSRFEWGLI 353

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             +  PD +    ++ K  A  ++     +  YI  R+  ++   E  + ++   A    
Sbjct: 354 TDVQPPDLETRIAILRKKAASERLQAPDDVLEYIASRISTNIRELEGALIRVTAFANLNR 413

Query: 228 MGITRSLAAEVLKET 242
             +  SLA  VLK+ 
Sbjct: 414 QLVDVSLAEIVLKDL 428


>gi|81251072|gb|ABB69875.1| DNA replication initiator protein [Nitrosospira sp. NRS527]
          Length = 475

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 88/257 (34%), Gaps = 33/257 (12%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVI 68
                +  + KN               + ++ +   A + A      +   P        
Sbjct: 125 FAMDAREKREKNPSR-------LNPSFTFNNFVTGKANQLARAGAIQVAERPGTAYNPFF 177

Query: 69  LVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID--------------TR 108
           + G  G GK+ L           + +   R+ +  + +  ++                + 
Sbjct: 178 IYGGVGLGKTHLIQAIGNFVLEHNSTAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSL 237

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI           + F+  N++ +    +++T  ++P         L SR    
Sbjct: 238 DVLLIDDIQFFGGKNRTQEEFFYAFNALIEAHRQVIITCDSYPKEISGMEERLISRFGWG 297

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             V +  P+ +    +++K      I +D+ +A +I + +  ++   E  + ++   +  
Sbjct: 298 LTVAVEPPELEMRVAILLKKALMENIVLDENVAFFIAKHIRSNVRELEGALKRVLAYSRF 357

Query: 226 RGMGITRSLAAEVLKET 242
            G  ++  LA E LK+ 
Sbjct: 358 TGHSLSLDLAREALKDL 374


>gi|126734082|ref|ZP_01749829.1| chromosomal replication initiation protein [Roseobacter sp. CCS2]
 gi|126716948|gb|EBA13812.1| chromosomal replication initiation protein [Roseobacter sp. CCS2]
          Length = 445

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 80/244 (32%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--K 87
           P     + D  +V    E A                 + L G  G GK+ L +  +   K
Sbjct: 104 PLDNRFTFDTFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELK 163

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
            RS   + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 164 ERSPELNVLYLSAEQFMYRFITALRERKMMDFKQLFRSVDVLMVDDVQFIGGKDSTQEEF 223

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++      ++++A   P         + SRL+   VV +   D +    ++    
Sbjct: 224 FHTFNALVDGQKQIIISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQSKV 283

Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                    + I   +  ++  R+  ++   E  + ++   A   G  IT  L  + L +
Sbjct: 284 DVYSAQYPELVIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREITLELTQDCLSD 343

Query: 242 TQQC 245
             + 
Sbjct: 344 VLKA 347


>gi|114762142|ref|ZP_01441610.1| chromosomal replication initiation protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114545166|gb|EAU48169.1| chromosomal replication initiation protein [Roseovarius sp.
           HTCC2601]
          Length = 451

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 84/244 (34%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A                 + L G  G GK+ L +   W  +
Sbjct: 110 PLDGRFTFDSFVVGKPNELAHAAAKRVAEGGQVTFNPLFLYGGVGLGKTHLMHAIAWDLR 169

Query: 88  SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126
           +     + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 170 NNRPDLNVLYLSAEQFMYRFVQALRERRMMDFKELFRSVDVLMVDDVQFIAGKDSTQEEF 229

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL++  VV +   D +    ++    
Sbjct: 230 FHTFNALVDQNKQIIISADRAPDEIKDLENRIRSRLQSGLVVDLHPTDYELRLGILQSKV 289

Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            + +     + +D  +  ++  R+  ++   E  + ++   A   G  IT  L  + L +
Sbjct: 290 QNYREQYPALQLDDGILEFLAHRISTNVRVLEGALTRLFAFASLVGQPITMELTQDCLAD 349

Query: 242 TQQC 245
             + 
Sbjct: 350 VLRA 353


>gi|325961451|ref|YP_004239357.1| chromosomal replication initiator protein DnaA [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467538|gb|ADX71223.1| chromosomal replication initiator protein DnaA [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 474

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 91/259 (35%), Gaps = 27/259 (10%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV 66
           F PD+    +P+         F R       D  ++ S+      A   +   P+     
Sbjct: 109 FSPDQLIEQKPQPMLPSTSHEFGRLNPKYVFDTFVIGSSNRFAHAAAVAVAEAPAKAYNP 168

Query: 67  VILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK----------- 109
           + + G SG GK+ L +     +R        R+ N  +  +  +   R            
Sbjct: 169 LFIYGDSGLGKTHLLHAIGHYARRLYSGIRVRYVNSEEFTNDFINSIRDDEGASFKTTYR 228

Query: 110 ---PVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI  L   D  L   FH  NS+H  +  +++T+   P         + SR +
Sbjct: 229 NVDVLLIDDIQFLAGKDRTLEEFFHTFNSLHNNNKQVVITSDQPPKLLAGFEDRMKSRFE 288

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              +  I  P+ +    ++ K      +        YI  ++  ++   E  + ++   A
Sbjct: 289 WGLLTDIQPPELETRIAILRKKALSEGLSAPDDALEYIASKISSNIRELEGALIRVTAFA 348

Query: 224 LSRGMGITRSLAAEVLKET 242
                 +  +LA  VLK+ 
Sbjct: 349 SLNRQPVDVALAEMVLKDL 367


>gi|256389233|ref|YP_003110797.1| chromosomal replication initiator protein DnaA [Catenulispora
           acidiphila DSM 44928]
 gi|256355459|gb|ACU68956.1| chromosomal replication initiator protein DnaA [Catenulispora
           acidiphila DSM 44928]
          Length = 570

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 88/256 (34%), Gaps = 32/256 (12%)

Query: 16  QKNDQPKN--KEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILV 70
            ++  P +  K +Q   +         +  ++ S+      A   +   P+     + + 
Sbjct: 216 ARSSTPDDGAKAQQAKLN----EKYVFETFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIY 271

Query: 71  GPSGSGKSCLANIWSDKSRST--------------------RFSNIAKSLDSILIDTRKP 110
           G SG GK+ L +     +R+                        + A +           
Sbjct: 272 GDSGLGKTHLLHAIGHYARNLYPGTRVRYVSTEEFTNDFINAIRDGAGNHLRKRYRDVDI 331

Query: 111 VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI   +  +    + FH  N++H     +++++   P         L SR +   +
Sbjct: 332 LMVDDIQFLENKEGTQEEFFHTFNTLHNASKQIVISSDRPPKQLNTLEDRLRSRFEWGLI 391

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  P+ +    ++ K      +    ++  +I  ++  ++   E  + ++   A    
Sbjct: 392 TDIQPPELETRIAILRKKAQQEGLNAPPEVLEFIASKISTNIRELEGALIRVTAFASLNR 451

Query: 228 MGITRSLAAEVLKETQ 243
             +  SLA +VLK   
Sbjct: 452 APVDLSLAEDVLKNLM 467


>gi|297158791|gb|ADI08503.1| chromosomal replication initiation protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 618

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 280 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 339

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 340 YPGTRVRYVSSEEFTNEFINSIRDGKADAFRKRYRDMDILLVDDIQFLASKESTQEEFFH 399

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 400 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 458

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 459 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 513


>gi|86604734|ref|YP_473497.1| chromosomal replication initiation protein [Synechococcus sp.
           JA-3-3Ab]
 gi|123724517|sp|Q2JQW9|DNAA_SYNJA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|86553276|gb|ABC98234.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           JA-3-3Ab]
          Length = 467

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 77/237 (32%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
               S    +V      A     +    P R    + L G  G GK+ L           
Sbjct: 128 NPKYSFSRFVVGPNNRMAHAAALAVADKPGRAYNPLFLCGGVGLGKTHLMQAIGHYQLEA 187

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
             R+  F    +   + LID  +                +L++DI  ++  +    + FH
Sbjct: 188 NPRAKVFYVSTERFTNDLIDAIRRDSMQSFREHYRDVDILLVDDIQFIEGKEYTQEEFFH 247

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++ A   P         LCSR     + +I  PD +    ++ K    
Sbjct: 248 TFNTLHESGKQIVLAADRSPHLIPRLQERLCSRFSMGLIAEIQPPDIETRMAILKKKAEY 307

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             + +  ++  YI      ++   E  + +        G+ ++      +L    + 
Sbjct: 308 EGMILPPEVIEYIATTYTSNIRELEGALIRAVAYVSISGLPMSVETIQPILNPPSEP 364


>gi|317182731|dbj|BAJ60515.1| chromosomal replication initiation protein [Helicobacter pylori
           F57]
          Length = 455

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNATIDLNLAKTVLEDLQK 342


>gi|315585910|gb|ADU40291.1| DNA-directed DNA replication initiator protein [Helicobacter pylori
           35A]
          Length = 455

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNATIDLNLAKTVLEDLQK 342


>gi|289642466|ref|ZP_06474611.1| chromosomal replication initiator protein DnaA [Frankia symbiont of
           Datisca glomerata]
 gi|289507725|gb|EFD28679.1| chromosomal replication initiator protein DnaA [Frankia symbiont of
           Datisca glomerata]
          Length = 500

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 95/262 (36%), Gaps = 31/262 (11%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA---VRLIDSWPSWP 63
           D +   P   ++  P++ E               +  ++  +          +   P+  
Sbjct: 137 DTARITPGLGRDPAPRSYE-----PTRLNPRYVFETFVIGDSNRFPHAAAVAVAEAPAKA 191

Query: 64  SRVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI----------- 105
              + + G SG GK+ L +           +SR    S+   + D I             
Sbjct: 192 YNPLFIYGDSGLGKTHLLHAIGHYTLKLYPESRVKYVSSEEFTNDFINSIRDDRQQAFQR 251

Query: 106 --DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                  +L++DI  L+  +    + FH  N +H  +  +++++   P         L S
Sbjct: 252 RYRDTDVLLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDRSPKQLSALEDRLRS 311

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R +   +  ++ PD +    ++ K  A  ++ +   +  YI   +ER++   E  + ++ 
Sbjct: 312 RFEWGLITDVTPPDLETRIAILSKKAATERLPVPGDVLEYIATHIERNIRELEGALIRVA 371

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             A      + R+LA  VL++ 
Sbjct: 372 AFASLNKSHVDRTLAEIVLRDL 393


>gi|209523410|ref|ZP_03271965.1| chromosomal replication initiator protein DnaA [Arthrospira maxima
           CS-328]
 gi|209496152|gb|EDZ96452.1| chromosomal replication initiator protein DnaA [Arthrospira maxima
           CS-328]
          Length = 453

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 30/212 (14%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--------------- 84
            +V S    A     +    P R    + L G  G GK+ L                   
Sbjct: 126 FVVGSGSRLAHAASLAVAESPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEINPYARVFY 185

Query: 85  --SDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFND---TQLFHIINSIHQY 136
             ++K  +   + I +       D  +    +L++DI  ++  +    + FH  N++H+ 
Sbjct: 186 VSTEKFTNDLIAAIRRDSMQSFRDHYRAADVLLVDDIQFIEGKEYTQEEFFHTFNTLHEA 245

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              +++ +   P         LCSR     V  I  PD +    ++ K      + +   
Sbjct: 246 GKQIVLASDRPPSKISGLQDRLCSRFSMGLVADIQPPDLETRMAILQKKAEYENMRLPPA 305

Query: 197 LAAYIVQRME---RSLV-FAEKLVDKMDNLAL 224
           +  YI        R L     + V  +   +L
Sbjct: 306 VIEYIATNYTSNIRELEGALIRAVAYISISSL 337


>gi|297588057|ref|ZP_06946701.1| ATPase [Finegoldia magna ATCC 53516]
 gi|297574746|gb|EFH93466.1| ATPase [Finegoldia magna ATCC 53516]
          Length = 481

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 78/210 (37%), Gaps = 27/210 (12%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRK----- 109
           P+     + + G +G GK+ L +  + +      ++      ++S  + LI +       
Sbjct: 170 PATAYNPLFIHGKAGLGKTHLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTK 229

Query: 110 -------------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         +L++DI  +        + FH  N ++ ++  +++++   P     
Sbjct: 230 KNSQFRQKYRNIDVLLIDDIQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKT 289

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR +   +  I  PD +    +I +        +  ++  YI   ++ ++   E
Sbjct: 290 LEERLVSRFEWGLMADIQPPDYETRVAIINEYLDRNNTSLTPEIIDYIAMNVKSNIRELE 349

Query: 214 KLV-DKMDNLALSRGMGITRSLAAEVLKET 242
             V + +    L     IT  LA  VLK+ 
Sbjct: 350 GAVMNVVGQKTLIGDGNITLDLAKNVLKQL 379


>gi|86738725|ref|YP_479125.1| chromosomal replication initiator protein DnaA [Frankia sp. CcI3]
 gi|86565587|gb|ABD09396.1| chromosomal replication initiator protein DnaA [Frankia sp. CcI3]
          Length = 562

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 89/253 (35%), Gaps = 30/253 (11%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGP 72
           +     + +  Q   +         +  ++  +         +    P      + + G 
Sbjct: 207 RDAAPHETEPAQARLN----PRYIFETFVIGDSNRFPHAAAVAVAEAPAKAYNPLFIYGD 262

Query: 73  SGSGKSCLANIWSDKS-------RSTRFSNIAKSLDSILI-------------DTRKPVL 112
           SG GK+ L +     +       R    S+   + D I                    +L
Sbjct: 263 SGLGKTHLLHAIGHYALKLYPNMRVKYVSSEEFTNDFINSIRDDRQQAFQRRYRDIDVLL 322

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  L+  +    + FH  N +H  +  +++++   P         L SR +   +  
Sbjct: 323 VDDIQFLENKERTQEEFFHTFNVLHDGEKQIVISSDRSPKQLSALEDRLRSRFEWGLMTD 382

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I+ PD +    ++ K  A  ++ +   +  YI   +ER++   E  + ++   A      
Sbjct: 383 ITPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASLNKSH 442

Query: 230 ITRSLAAEVLKET 242
           + R+LA  VL++ 
Sbjct: 443 VDRTLAEIVLRDL 455


>gi|297193296|ref|ZP_06910694.1| chromosomal replication initiator protein dnaA [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151727|gb|EDY62296.2| chromosomal replication initiator protein dnaA [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 611

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 273 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 332

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 333 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 392

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L +R +      +  P+ +    ++ K    
Sbjct: 393 TFNTLHNANKQIVLSSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAVQ 452

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 453 EQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 506


>gi|323357956|ref|YP_004224352.1| ATPase [Microbacterium testaceum StLB037]
 gi|323274327|dbj|BAJ74472.1| ATPase [Microbacterium testaceum StLB037]
          Length = 471

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 85/233 (36%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D+ ++  +      A   +   P+     + + G SG GK+ L +   D + S 
Sbjct: 134 NPKYTFDNFVIGQSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGDYAASM 193

Query: 92  R-----------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFN---DTQLFH 128
                              ++IA +  S      + V   L++DI  L          FH
Sbjct: 194 YAGIRVRYVSSEEFTNDFINSIANNRGSAFQARYRDVDILLIDDIQFLQGRAETQEAFFH 253

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H +D  +++T+   P         + SR +   +  +  PD +    ++ K    
Sbjct: 254 TFNTLHDHDKQVVITSDLPPKQLTGFEDRMRSRFEWGLITDVQAPDLETRIAILRKKAQS 313

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            ++ I   +  YI   +  ++   E  + ++   A      +  SLA  VL++
Sbjct: 314 ERLLIPDDVLEYIATVVSSNIRELEGALIRVSAFASLNRSTLDMSLAQTVLRD 366


>gi|228476806|ref|ZP_04061454.1| chromosomal replication initiator protein DnaA [Streptococcus
           salivarius SK126]
 gi|228251543|gb|EEK10680.1| chromosomal replication initiator protein DnaA [Streptococcus
           salivarius SK126]
          Length = 454

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 84/257 (32%), Gaps = 33/257 (12%)

Query: 17  KNDQPKNKEEQLF----FSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVIL 69
            ND    KE+Q               + D+ +       +V     +   P      + +
Sbjct: 94  NNDFGNKKEQQTPALPTLDSDLNSKYTFDNFIQGDENRWSVAASLAVADSPGATYNPLFI 153

Query: 70  VGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTR--K 109
            G  G GK+ L N   +K                              +D + +  R   
Sbjct: 154 YGGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVVHIRLDKMDELKLKYRHLD 213

Query: 110 PVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
            +L++DI  L          + F+  N +H  +  +++T+   P         L +R K 
Sbjct: 214 VLLIDDIQSLAKKSTQATQEEFFNTFNVLHNNNKQIVLTSDRNPDQLNEMEERLVTRFKW 273

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              V I+ PD +    ++     D       +   Y+  + + ++   E  +  +  +A 
Sbjct: 274 GLTVNITPPDFETRVAILTNKIMDYDYHFPPETIEYLAGQFDSNVRDLEGALKDISLVAN 333

Query: 225 SRG-MGITRSLAAEVLK 240
            R    IT  +AAE ++
Sbjct: 334 VRQLDTITVEVAAEAIR 350


>gi|312864110|ref|ZP_07724345.1| chromosomal replication initiator protein DnaA [Streptococcus
           vestibularis F0396]
 gi|322515792|ref|ZP_08068737.1| DNA-directed DNA replication initiator protein [Streptococcus
           vestibularis ATCC 49124]
 gi|311100342|gb|EFQ58550.1| chromosomal replication initiator protein DnaA [Streptococcus
           vestibularis F0396]
 gi|322125754|gb|EFX97072.1| DNA-directed DNA replication initiator protein [Streptococcus
           vestibularis ATCC 49124]
          Length = 454

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 87/262 (33%), Gaps = 35/262 (13%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPS 64
           P    ND    +E+Q   + P          + D+ +       +V     +   P    
Sbjct: 90  PTLSSNDFSNKREQQTP-ALPTLNSDLNSKYTFDNFIQGDENRWSVAASLAVADSPGATY 148

Query: 65  RVVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILID 106
             + + G  G GK+ L N   +K                              +D + + 
Sbjct: 149 NPLFIYGGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVLHIRLDKMDELKLK 208

Query: 107 TR--KPVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
            R    +L++DI  L          + F+  N +H  +  +++T+   P         L 
Sbjct: 209 YRHLDVLLIDDIQSLAKKSTQATQEEFFNTFNVLHDNNKQIVLTSDRNPDQLNEMEERLV 268

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +R K    V I+ PD +    ++     D       +   Y+  + + ++   E  +  +
Sbjct: 269 TRFKWGLTVNITPPDFETRVAILTNKIMDYDYHFPPETIEYLAGQFDSNVRDLEGALKDI 328

Query: 220 DNLALSRG-MGITRSLAAEVLK 240
             +A  R    IT  +AAE ++
Sbjct: 329 SLVANVRQLDTITVEVAAEAIR 350


>gi|310816811|ref|YP_003964775.1| chromosomal replication initiation protein [Ketogulonicigenium
           vulgare Y25]
 gi|308755546|gb|ADO43475.1| chromosomal replication initiation protein [Ketogulonicigenium
           vulgare Y25]
          Length = 468

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 84/253 (33%), Gaps = 37/253 (14%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRV--VILVGPSGSGKSCL 80
              QL          + D  +V  + E A           P     + + G  G GK+ L
Sbjct: 124 PAAQL------DARYTFDRFIVGKSNELAYAAARRVAQGGPVGFNPLFMYGGVGLGKTHL 177

Query: 81  ANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLD 120
            +  + + R  +       L +                     ++ +   ++++D+  + 
Sbjct: 178 MHAIAHELRRQQPDLNVLYLSAEQFMYRFVSALRDKKALDFKAMLRSVDVLMIDDVQFIA 237

Query: 121 FND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
             +    + FH  N++      +++++   P         + SRL+A  VV +   D   
Sbjct: 238 GKESTQEEFFHTFNALVDAQKQVIISSDRAPGEIRDINDRISSRLQAGLVVDLHPSDFTL 297

Query: 178 LEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
              V+             + +++ +  ++  R+  ++   E  + ++   A      I+ 
Sbjct: 298 RLGVLESRAKTAAAAYPHVVLEEDVLPFLAHRISSNIRVLEGALTRLFAFAGLVNKSISI 357

Query: 233 SLAAEVLKETQQC 245
           +L  + L +  + 
Sbjct: 358 ALTQDCLADILRA 370


>gi|317014942|gb|ADU82378.1| chromosomal replication initiation protein [Helicobacter pylori
           Gambia94/24]
          Length = 457

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 110 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 169

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 170 KHKKVVLVTSEDFLTDFLKHLDNKNMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 229

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 230 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 289

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 290 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLEDLQK 344


>gi|309805918|ref|ZP_07699950.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167694|gb|EFO69841.1| chromosomal replication initiator protein DnaA [Lactobacillus iners
           LactinV 03V1-b]
          Length = 333

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
               + D  +     + A     +    P      + + G  G GK+ L         ++
Sbjct: 4   NSKYTFDTFVQGEGNKLAAGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQMLTE 63

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K+ +      +++  +  I++ K                +L++DI      +    + FH
Sbjct: 64  KANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDIQFFAKKEGIQEEFFH 123

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              +++     ++MT+   P         L SR      V+I+ PD +    ++ K    
Sbjct: 124 TFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKKAEA 183

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + ID     Y+  +++ ++   E  + K+   A      I  +LA E L + 
Sbjct: 184 DGLGIDDNTLDYVASQVDTNIRELEGALVKVQAHATIEREDINLNLAKEALADL 237


>gi|308185298|ref|YP_003929431.1| chromosomal replication initiation protein [Helicobacter pylori
           SJM180]
 gi|308061218|gb|ADO03114.1| chromosomal replication initiation protein [Helicobacter pylori
           SJM180]
          Length = 455

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLEDLQK 342


>gi|307638185|gb|ADN80635.1| Chromosomal replication initiator protein [Helicobacter pylori 908]
 gi|325996781|gb|ADZ52186.1| Chromosomal replication initiator protein [Helicobacter pylori
           2018]
 gi|325998373|gb|ADZ50581.1| Chromosomal replication initiator protein [Helicobacter pylori
           2017]
          Length = 457

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 110 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 169

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 170 KHKKVVLVTSEDFLTDFLKHLDNKNMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 229

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 230 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 289

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 290 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLEDLQK 344


>gi|81251076|gb|ABB69878.1| DNA replication initiator protein [Nitrosospira sp. TYM9]
          Length = 475

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85
               + ++ +   A + A      +   P        + G  G GK+ L           
Sbjct: 141 NPSFTFNNFVTGKANQLARAGAIQVAERPGTAYNPFFIYGGVGLGKTHLIQAIGNFVLEH 200

Query: 86  DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
           + +   R+++  + +  ++                +   +L++DI           + F+
Sbjct: 201 NSTAKVRYTHSEQYVSGVVRAYQHKAFDDFKRYYHSLDVLLIDDIQFFGGKNRTQEEFFY 260

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T  ++P         L SR      V +  P+ +    +++K    
Sbjct: 261 AFNALIEAHRQVIITCDSYPKEISGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 320

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I +D+ +A +I + +  ++   E  + ++   +   G  ++  LA E LK+ 
Sbjct: 321 ENIVLDENVAFFIAKHIRSNVRELEGALKRVLAYSRFTGHSLSLDLAREALKDL 374


>gi|15612482|ref|NP_224135.1| chromosomal replication initiation protein [Helicobacter pylori
           J99]
 gi|14194709|sp|Q9ZJ96|DNAA_HELPJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|4156038|gb|AAD06996.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
          Length = 457

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 110 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 169

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 170 KHKKVVLVTSEDFLTDFLKHLDNKNMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 229

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 230 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 289

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  VL++ Q+
Sbjct: 290 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLEDLQK 344


>gi|149912812|ref|ZP_01901346.1| chromosomal replication initiator protein DnaA [Roseobacter sp.
           AzwK-3b]
 gi|149813218|gb|EDM73044.1| chromosomal replication initiator protein DnaA [Roseobacter sp.
           AzwK-3b]
          Length = 473

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 82/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A                 + L G  G GK+ L +   W  K
Sbjct: 132 PLDERFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAWELK 191

Query: 88  SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126
            RS   + +  S +                    L  +   ++++D+  +   +    + 
Sbjct: 192 QRSPELTVLYLSAEQFMYRFVQALRDRKMMDFKELFRSVDVLMVDDVQFIAGKESTQEEF 251

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++    P         + SRL+   VV +   D +    ++    
Sbjct: 252 FHTFNALVDQNKQIVISGDRAPGEIANLEDRIKSRLQCGLVVDLHPTDYELRLGILQSKS 311

Query: 187 AD--RQ---IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               RQ   + +   +  ++  R+  ++   E  + ++   A   G  IT  L  + L +
Sbjct: 312 EHYARQYPDLKLSNGVLEFLAHRISTNVRVLEGALTRLFAFASLVGHEITLELTQDCLAD 371

Query: 242 TQQC 245
             + 
Sbjct: 372 ILRA 375


>gi|253995375|ref|YP_003047439.1| chromosomal replication initiator protein DnaA [Methylotenera
           mobilis JLW8]
 gi|253982054|gb|ACT46912.1| chromosomal replication initiator protein DnaA [Methylotenera
           mobilis JLW8]
          Length = 472

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87
               + ++ +   A + A          P      + + G  G GK+ L     ++    
Sbjct: 138 NPTFNFNNYVTGRANQLARAAAIQVAENPGSAYNPLFIYGGVGLGKTHLLQAIGNELRLH 197

Query: 88  ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFH 128
                          S++ K+ +    D       +   +L++DI           + F+
Sbjct: 198 NPDAKIRYLHAERYVSDVVKAYEHKAFDEFKRQYHSLDLLLIDDIQFFAKKTRTQEEFFY 257

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS+ +    +++T  T+P         L +R      V +  P+ +    +++K    
Sbjct: 258 AFNSLIEAKKQIVITCDTYPKEIADVDERLRTRFSWGLTVAVEPPELEMRVAILLKKAEA 317

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + + +A +I +++  S+   E  ++++  ++   G  I   LA + L++ 
Sbjct: 318 VNLNLPEDVAFFIAKQIRSSVRELEGALNRIIAMSKFTGHAIDVHLAKDALRDL 371


>gi|11132617|sp|Q9ZH76|DNAA_STRRE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|3808288|gb|AAD08806.1| DNA replication initiator protein [Streptomyces reticuli]
          Length = 643

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 305 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 364

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 365 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 424

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 425 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 483

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 484 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 538


>gi|186680551|ref|YP_001863747.1| chromosomal replication initiation protein [Nostoc punctiforme PCC
           73102]
 gi|226735830|sp|B2J2B2|DNAA_NOSP7 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|186463003|gb|ACC78804.1| chromosomal replication initiator protein DnaA [Nostoc punctiforme
           PCC 73102]
          Length = 459

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 75/239 (31%), Gaps = 38/239 (15%)

Query: 17  KNDQPKNKEEQLF------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---V 67
           ++  P +  E L                SR   +V +    A     +    P +    +
Sbjct: 98  ESTNPSSIPESLPHHNHKTTELNSKYVFSR--FVVGANNRMAHAASLAVAESPGKEFNPL 155

Query: 68  ILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILI---------------DT 107
            L G  G GK+ L        W        F    +   + LI                 
Sbjct: 156 FLCGGVGLGKTHLMQAIGHYRWKICPDCKIFYVSTEQFTNDLITAIRKDSMQSFREHYRA 215

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI  L+  +    + F+  N++H+    +++ +   P         LCSR   
Sbjct: 216 ADVLLVDDIQFLEGKEYTQEEFFYTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSM 275

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKM 219
             +  I  PD +    ++ K   D  I + + +  YI        R L     + V  +
Sbjct: 276 GLIADIQKPDLETRMAILQKKAEDENIRLPRDVIEYIASNYTSNIRELEGALIRAVAYI 334


>gi|254281820|ref|ZP_04956788.1| chromosomal replication initiator protein DnaA [gamma
           proteobacterium NOR51-B]
 gi|219678023|gb|EED34372.1| chromosomal replication initiator protein DnaA [gamma
           proteobacterium NOR51-B]
          Length = 478

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 81/232 (34%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93
           G + D  +   + + A+         P      + L G  G GK+ L +   +  R+ + 
Sbjct: 146 GYTFDSFVEGKSNQLALAAAQQVAENPGNSYNPLFLYGGVGLGKTHLMHAVGNALRARKP 205

Query: 94  SNIAKSLDSILIDTR--------------------KPVLLEDID---LLDFNDTQLFHII 130
                 L S                            +L++DI      D +  + FH  
Sbjct: 206 DAKIVYLHSERFVADMVKALQLNAINDFKRYYRTVDALLIDDIQFFANKDRSQEEFFHTF 265

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++ +    +++T   +P         L SR      V +  P+ +    +++K  A+  
Sbjct: 266 NALLEGGQQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAAEAD 325

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I +  + A +I QR+  ++   E  + ++   A   G      L  + LK+ 
Sbjct: 326 IDLVPEAAFFIAQRIRSNVRELEGALKRVIASANFTGRPYDIELIKDSLKDL 377


>gi|29830859|ref|NP_825493.1| chromosomal replication initiation protein [Streptomyces
           avermitilis MA-4680]
 gi|38257424|sp|Q82FD8|DNAA_STRAW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|29607972|dbj|BAC72028.1| putative replication initiator protein [Streptomyces avermitilis
           MA-4680]
          Length = 653

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 315 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 374

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 375 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 434

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 435 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 493

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 494 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 548


>gi|213966256|ref|ZP_03394440.1| chromosomal replication initiator protein DnaA [Corynebacterium
           amycolatum SK46]
 gi|213951108|gb|EEB62506.1| chromosomal replication initiator protein DnaA [Corynebacterium
           amycolatum SK46]
          Length = 582

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 91/256 (35%), Gaps = 29/256 (11%)

Query: 16  QKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71
           +        E  + F  P      + +  ++    + A     +    P R    + + G
Sbjct: 224 RSESHGTPTEMSMPFEEPTLNPNYTFETFVIGPQNKFAAAAAVAVAESPGRTYNPLFISG 283

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKS-----------LDSILIDTRKP---------- 110
            SG GK+ L +     ++   + N+              ++S+  D ++           
Sbjct: 284 GSGLGKTHLLHGIGHYAK-HLYPNLRVRYVSSEEFTNDFINSVRDDAQESFKRRYRDLDM 342

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  L+  +    + FH  N++HQ +  +++++   P         L +R +    
Sbjct: 343 LIIDDIQFLEGKEGTQEEFFHTFNALHQSNHQIVLSSDRPPRELKTLEDRLRTRFQWGLN 402

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             +  PD +    ++ K      + +   +  YI +    S+   E  + ++   A    
Sbjct: 403 PDLQYPDLETRIAILSKKAQLSDLAVPHNVLQYIAENTSSSIRELEGRLLQISAHASMIH 462

Query: 228 MGITRSLAAEVLKETQ 243
             +T   A E+L   +
Sbjct: 463 EPVTLKFAQEILGADE 478


>gi|239980787|ref|ZP_04703311.1| chromosomal replication initiation protein [Streptomyces albus
           J1074]
          Length = 697

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 359 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYARSL 418

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 419 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 478

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 479 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 537

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 538 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 592


>gi|77917619|ref|YP_355434.1| chromosomal replication initiation protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77543702|gb|ABA87264.1| chromosomal replication initiator protein DnaA [Pelobacter
           carbinolicus DSM 2380]
          Length = 452

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 93/252 (36%), Gaps = 32/252 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGP 72
           Q+   P+     L          + +  ++ S+ + A     +  +        + + G 
Sbjct: 105 QEKTPPRANAYNL------NSRYTFETFVLGSSNQFASAAATAVANNPATTYNPLFIYGG 158

Query: 73  SGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVL 112
            G GK+ L N   +              +     + +  SL    +D       +   +L
Sbjct: 159 VGLGKTHLVNAVGNAILKKNPEMKVCYYTSEKFMNELINSLRYAKMDEFRTKFRSMDVLL 218

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++D+  +   +    + FH  N+++     +++T+  FP         L SR +   +  
Sbjct: 219 IDDVQFIAGKERTQEEFFHTFNALYDSHKQIVVTSDKFPKEIPGLEERLRSRFEWGLIAD 278

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  PD +  + ++        I + K++A ++   +  ++   E  + ++   A      
Sbjct: 279 IQAPDMETKQAILKMKAEQNGIDLPKEVALFLASAVSSNIRELEGYLVRIGAYASLTATP 338

Query: 230 ITRSLAAEVLKE 241
           IT S+A EVLK+
Sbjct: 339 ITLSMAQEVLKD 350


>gi|227500986|ref|ZP_03931035.1| DNA-directed DNA replication initiator protein [Anaerococcus
           tetradius ATCC 35098]
 gi|227216759|gb|EEI82157.1| DNA-directed DNA replication initiator protein [Anaerococcus
           tetradius ATCC 35098]
          Length = 459

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 76/222 (34%), Gaps = 31/222 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSRV--------VILVGPSGSGKSCLANIWS------ 85
             + +   + + A+ +  +     S          + + G SG GK+ L    +      
Sbjct: 125 FANFVEGKSNQYALGVSQAVAENISNKSQARLYNPLFIYGESGLGKTHLMQAIAHEILDN 184

Query: 86  -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                      +K  +   S +  + +    +  + V   L++DI  +   +    + FH
Sbjct: 185 RDDAYVMYLSSEKFTNEMISALRSTKNEKFREKYRSVDILLIDDIQFIAGKEGTQEEFFH 244

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++     +++++   P         L SR     +V I  PD +    ++ K    
Sbjct: 245 TFNDLYNTGKQIVISSDRPPKEIKHLENRLISRFSWGIIVDIGKPDFETRVAILQKKLDQ 304

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
              +I+  +  YI + ++ ++   E  +      A S    I
Sbjct: 305 LGAYIENDILFYIAENIDTNIRDLEGALSTAIAYAKSDNREI 346


>gi|28492968|ref|NP_787129.1| chromosomal replication initiator protein [Tropheryma whipplei str.
           Twist]
 gi|28572176|ref|NP_788956.1| chromosomal replication initiator protein DnaA [Tropheryma whipplei
           TW08/27]
 gi|61212757|sp|Q83N52|DNAA_TROWT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61212759|sp|Q83NZ5|DNAA_TROW8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|28410307|emb|CAD66693.1| chromosomal replication initiator protein DnaA [Tropheryma whipplei
           TW08/27]
 gi|28476008|gb|AAO44098.1| chromosomal replication initiator protein [Tropheryma whipplei str.
           Twist]
          Length = 478

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 26/235 (11%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-------- 82
                + D+ +V  + E A     S    P +    + + G SG GK+ L +        
Sbjct: 143 VNPRFTFDNFVVGKSNELARAASISAAERPGKSFNPLFIYGDSGVGKTHLLHSIGNYAKF 202

Query: 83  ---------IWSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFNDTQ---LF 127
                    + S+   +   ++I+        +  + +   +++DI  L          F
Sbjct: 203 LFPSLRIKYVSSEDFTNDFINSISSGTSQKFQEKYRQIDILMVDDIQFLQKKQETQESFF 262

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  NS+H     L++++   P         + SR +   V  I  PD +    ++ K   
Sbjct: 263 HTFNSLHNSSRQLVISSDLPPKQLMGFEDRMRSRFECGLVCDIQKPDLETRIAILQKKCQ 322

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +  +  ++  YI      S+   E  + ++  LA      I  +LA +VL++ 
Sbjct: 323 NEKKEVSMEILTYIASCFSSSVRELEGALLRIFALASFNKEEINMTLAQKVLEDL 377


>gi|299143462|ref|ZP_07036542.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517947|gb|EFI41686.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 447

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 97/271 (35%), Gaps = 42/271 (15%)

Query: 3   LMKEDYSFFVPDKQKNDQ-PKNKEEQLFFSFPRCLGISRDDLLVHSAIE--------QAV 53
           ++ ED    +P ++K+   P+ +                ++ +V  + E         A 
Sbjct: 84  ILTEDEDEIIPLRKKDTLLPETR---------LNPKYIFENFVVGKSNEFAHAAALAVAE 134

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNI 96
             +D      S  + + G  G GK+ L                     S++  +   ++I
Sbjct: 135 NYLD-PSDAHSNPLFIYGGVGLGKTHLMQAIGHFVHQQDPNKKILYVTSEQFTNELINSI 193

Query: 97  AKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVS 150
             + +    +  +    +L++DI  +   D    + FH  N +H+ +  +++T+   P  
Sbjct: 194 QTNKNEHFRNKYRKVDLLLIDDIQFIADKDRTQEEFFHTFNELHESNKQIVLTSDKPPKD 253

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
                  L SR     VV I  PD +    ++          +   +  +I Q ++ ++ 
Sbjct: 254 IKSLEERLISRFAWGLVVDIGTPDLETRIAILRSKADSEGFNVPDNIINFIAQNVKSNIR 313

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             E  + ++   +      +T   AA VL++
Sbjct: 314 ELEGALSRIMAYSKLTVGEMTEQTAAIVLRD 344


>gi|291294405|ref|YP_003505803.1| chromosomal replication initiator protein DnaA [Meiothermus ruber
           DSM 1279]
 gi|290469364|gb|ADD26783.1| chromosomal replication initiator protein DnaA [Meiothermus ruber
           DSM 1279]
          Length = 439

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS---WPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
                 ++ +V      A     +    P      + + G  G GK+ L +         
Sbjct: 106 NPKYIFENFVVGQNNNLAHAAAVAVAESPGNAYNPLFIYGGVGLGKTHLMHAVGHSVAQR 165

Query: 92  -----------------RFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                              + I +   S   D  + V   L++DI  +   +    + FH
Sbjct: 166 FPDKKIEYVSTETFTNELINAIREDRMSEFRDRYRSVDLLLVDDIQFIAGKERTQEEFFH 225

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++++   P         L SR +   +  I  PD +    ++      
Sbjct: 226 TFNALYEARKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRVAILKMNSEY 285

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           R + + +++  YI +++  ++   E  + ++   A   G+ +++++A + L + 
Sbjct: 286 RNMRVPEEVLEYIARQITSNIRELEGALMRVIAYASLNGVQLSKAVAIKALSDV 339


>gi|302531358|ref|ZP_07283700.1| chromosomal replication initiator protein DnaA [Streptomyces sp.
           AA4]
 gi|302440253|gb|EFL12069.1| chromosomal replication initiator protein DnaA [Streptomyces sp.
           AA4]
          Length = 585

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 89/234 (38%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
               + D  ++ ++      A   +   P+     + + G SG GK+ L +     ++  
Sbjct: 246 NEKYNFDTFVIGASNRFAHAAAVAVAEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRL 305

Query: 91  -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L+  +    + FH
Sbjct: 306 FPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDILLVDDIQFLEGKEGTQEEFFH 365

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L +R +   +  I  P+ +    ++ K  A 
Sbjct: 366 TFNTLHNANKQIVVSSDRPPKRLETLEDRLRTRFEWGLITDIQPPELETRIAILRKKAAQ 425

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ +  ++  +I  R+E ++   E  + ++   A      +   LA  VL++ 
Sbjct: 426 DRLAVPGEVLEFIASRVEANIRELEGALIRVTAFASLNQQPVEVGLAEIVLRDL 479


>gi|326442161|ref|ZP_08216895.1| chromosomal replication initiation protein [Streptomyces
           clavuligerus ATCC 27064]
          Length = 587

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 249 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 308

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 309 YPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKESTQEEFFH 368

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L +R +      +  P+ +    ++ K    
Sbjct: 369 TFNTLHNANKQIVLSSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAVQ 428

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 429 EQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 482


>gi|293611384|ref|ZP_06693680.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826256|gb|EFF84625.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123493|gb|ADY83016.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 469

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 94/260 (36%), Gaps = 38/260 (14%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID-------SWPSWPSR 65
           P       PK  +++L          +    +   + + A            +    P  
Sbjct: 117 PTTNSVVNPKTPKKKLL-----NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNP-- 169

Query: 66  VVILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR------------ 108
            + L GP+G GK+ L           K  +      ++S     + +             
Sbjct: 170 -LFLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNC 228

Query: 109 ---KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                +L++DI LL   +  L   F+  N++      +++T+  +P       P L SR 
Sbjct: 229 RSLDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRF 288

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
                V +  PD +   ++++K   +  + + +  A +I Q++  ++   E  ++K+  +
Sbjct: 289 SWGLSVGVEPPDIETRIEILLKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAI 348

Query: 223 ALSRGMGITRSLAAEVLKET 242
           +  +G  I   +  E LK+ 
Sbjct: 349 SRFKGAPIDLDVVRESLKDV 368


>gi|308175815|ref|YP_003915221.1| chromosomal replication initiator protein DnaA [Arthrobacter
           arilaitensis Re117]
 gi|307743278|emb|CBT74250.1| chromosomal replication initiator protein DnaA [Arthrobacter
           arilaitensis Re117]
          Length = 478

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ S+      A   +   P+     + + G SG GK+ L +     +R  
Sbjct: 138 NPKYIFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYARHL 197

Query: 91  -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLD---FNDTQLFH 128
                 R+ N  +  +  +   R                +L++DI  L        + FH
Sbjct: 198 YKGIRVRYVNSEEFTNDFINSIRDDEGASFKQTYRNVDILLIDDIQFLANKDATQEEFFH 257

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H ++  +++T+   P         + SR +   +  I  P+ +    ++ K    
Sbjct: 258 TFNALHNHNKQVVITSDLPPKQLQGFEDRMRSRFEWGLLTDIQPPELETRIAILRKKADA 317

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +     +  YI  R+  ++   E  + ++   A      +  +LA  VLK+ 
Sbjct: 318 ENLSAPGDVMEYIASRISTNIRELEGALIRVTAFASLNNQPVDLALAETVLKDL 371


>gi|298373770|ref|ZP_06983759.1| DNA replication initiator protein, ATPase [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298274822|gb|EFI16374.1| DNA replication initiator protein, ATPase [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 458

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 83/234 (35%), Gaps = 31/234 (13%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK---- 87
              + D+ +   + +       +    P +     + + G SG GK+ ++N    +    
Sbjct: 126 EHYTFDNYIEGRSNKLVRSAGINVAQNPGKTMFNPLFIFGNSGVGKTHVSNAIGLEVKRR 185

Query: 88  ------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQL 126
                             + + R++N    L+     +   ++++DI          +  
Sbjct: 186 FPNKRVLYVSANLFELQYTDAVRYNNKNNFLN--FYQSLDVLIIDDIHQFMSKPGTQSTF 243

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+I + IH+    +++T    P         L +R +     +I+ PD +  + ++    
Sbjct: 244 FNIFDHIHRLGKQIILTCDRQPSELNGMEERLLTRFRWGLTAEITKPDIELRKNILRHKI 303

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +  +   + +  +I + +  ++   E  V  +   +      I+  LA +++ 
Sbjct: 304 KENGLHFPEDVVCFIAENITENIRDLEGAVISLLAHSTINNEDISIELAKKIID 357


>gi|99079842|ref|YP_611996.1| chromosomal replication initiation protein [Ruegeria sp. TM1040]
 gi|123252667|sp|Q1GKT2|DNAA_SILST RecName: Full=Chromosomal replication initiator protein DnaA
 gi|99036122|gb|ABF62734.1| chromosomal replication initiator protein DnaA [Ruegeria sp.
           TM1040]
          Length = 470

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 94/263 (35%), Gaps = 32/263 (12%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILV 70
           +++ N   K+  E L  + P     + D  +V    E A                 ++L 
Sbjct: 111 NQEGNTSVKSPPEDLQAA-PLDPRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLVLY 169

Query: 71  GPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDSI------------------LIDTRKP 110
           G  G GK+ L +   W  K R+   + +  S +                    L  +   
Sbjct: 170 GGVGLGKTHLMHAIAWELKERNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDV 229

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++D+  +   D    + FH  N++   +  ++++A   P         + SRL+   V
Sbjct: 230 LMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLV 289

Query: 168 VKISLPDDDFLEKVIV-KMFADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           V +   D +    ++  K+  +R+    + I   +   +  R+  ++   E  + ++   
Sbjct: 290 VDLHPTDYELRLGILQTKVQQNRKNYPDLKIADGVLELLAHRISTNVRVLEGALTRLFAF 349

Query: 223 ALSRGMGITRSLAAEVLKETQQC 245
           A   G  I   L  + L +  + 
Sbjct: 350 ASLVGREIDMDLTQDCLADVLRA 372


>gi|119714273|ref|YP_921238.1| chromosomal replication initiator protein DnaA [Nocardioides sp.
           JS614]
 gi|119534934|gb|ABL79551.1| chromosomal replication initiator protein DnaA [Nocardioides sp.
           JS614]
          Length = 528

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 87/240 (36%), Gaps = 26/240 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS 85
                     + +  ++ S+         +    P +    +++ G SG GK+ L +   
Sbjct: 182 SLETRLNPKYTFETFVIGSSNRFPHAAAVAVAEAPGKAYNPLLVYGDSGLGKTHLLHAIG 241

Query: 86  DKSRS------TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF---N 122
              RS       R+ +  +  +  +   R                +L++DI  L+     
Sbjct: 242 HYVRSLYTGAKVRYVSSEEFTNEFINAIRDDRQDRFKRRYRDVDVLLIDDIQFLEGKTQT 301

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N++H  +  +++T+   P         L +R +   +  +  PD +    ++
Sbjct: 302 QEEFFHTFNTLHNANKQIVLTSDRAPKRLEALEDRLRNRFEWGLITDVQPPDLETRIAIL 361

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            K  A  ++     +  +I  +++ ++   E  + ++   A      +  +LA  VLK+ 
Sbjct: 362 RKKAAMDRLTAPPDVLEFIASKIQTNIRELEGALIRVTAFANLNRQEVDMTLAEIVLKDL 421


>gi|297625199|ref|YP_003686962.1| Chromosomal replication initiator protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296920964|emb|CBL55501.1| Chromosomal replication initiator protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 488

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 85/236 (36%), Gaps = 29/236 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D+ ++ S+   A     +    P +    +++ G SG GK+ L +      R+ 
Sbjct: 147 NPRYTFDNFVIGSSNRFAHAAAVAVAEAPGKAYNPLMIYGESGLGKTHLLHALGHYVRNY 206

Query: 92  R--FSNIAKSLDSILIDTRKPVLLED-----------------------IDLLDFNDTQL 126
                    S + +  +    V  E+                       ++       + 
Sbjct: 207 YSNVRVKYVSTEEMTNEFINAVG-ENRTAEFRRKYRDDVDVLLIDDIQFLEGKTQTQEEF 265

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N++H     +++T+   P +       L SR +   +  I  PD +    ++ +  
Sbjct: 266 FYTFNALHNAQRQIVLTSDRPPKALEQLESRLRSRFEWGLITDIQPPDPETRIAILQRKA 325

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           A   + +   +  +I  +++ ++   E  + ++   A      ++ ++A +VL++ 
Sbjct: 326 AADNLSVPPGVLEFIASKIQTNIRELEGALIRVTAFASLNREEVSLAVAEQVLRDL 381


>gi|222823047|ref|YP_002574620.1| chromosomal replication initiator protein DnaA [Campylobacter lari
           RM2100]
 gi|222538268|gb|ACM63369.1| chromosomal replication initiator protein DnaA [Campylobacter lari
           RM2100]
          Length = 442

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 79/233 (33%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89
               + +  +V  + + A     +             + + GP+G GK+ L     +   
Sbjct: 102 NPSFTFESFVVGDSNQFAYATCKAITDKSKLGKLYNPIFIYGPTGLGKTHLLQAVGNVCL 161

Query: 90  STRFSNIAKSLDSILIDTR------------------KPVLLEDIDLLDFND---TQLFH 128
              +  I  + D+ + D                      +L++D+  L   D    + F 
Sbjct: 162 DNGYKVIYATSDNFINDFTMHLNNKTMSKFHEKYKNCDVLLIDDVQFLGKTDKIQEEFFF 221

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N I +    ++MT+   P         L SR     +  I+ P  D    +I K    
Sbjct: 222 TFNEIKEKFGQIIMTSDNPPNMLKGITERLKSRFANGIIADITPPQLDTKIAIIKKKCEF 281

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             I++  ++ +YI   M  ++   E ++  ++  A      IT  +    +K+
Sbjct: 282 NAIYLKPEVISYIATSMGDNIREIEGMITNLNAQARLFNQEITLEIVKSFMKD 334


>gi|126738627|ref|ZP_01754332.1| chromosomal replication initiation protein [Roseobacter sp.
           SK209-2-6]
 gi|126720426|gb|EBA17132.1| chromosomal replication initiation protein [Roseobacter sp.
           SK209-2-6]
          Length = 489

 Score = 99.5 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 82/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A                 ++L G  G GK+ L +   W   
Sbjct: 148 PLDPRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELT 207

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
            ++   + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 208 EKNPHLNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 267

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++    
Sbjct: 268 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQTKV 327

Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +Q     + I   +  ++  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 328 QMQQATYPDLQIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMDLTQDCLAD 387

Query: 242 TQQC 245
             + 
Sbjct: 388 VLRA 391


>gi|82701136|ref|YP_410702.1| chromosomal replication initiator protein DnaA [Nitrosospira
           multiformis ATCC 25196]
 gi|123740823|sp|Q2YD61|DNAA_NITMU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|81251041|gb|ABB69852.1| DNA replication initiator protein [Nitrosospira multiformis]
 gi|82409201|gb|ABB73310.1| chromosomal replication initiator protein DnaA [Nitrosospira
           multiformis ATCC 25196]
          Length = 476

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 90/255 (35%), Gaps = 28/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILV 70
           D +     K K+E+           + +  +   A + A      +   P        + 
Sbjct: 123 DTKDTKDAKEKQEKNPTRL--NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIY 180

Query: 71  GPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID--------------TRKP 110
           G  G GK+ L           + +   R+ +  + +  ++                +   
Sbjct: 181 GGVGLGKTHLIQAIGNFVVEQNPAAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDL 240

Query: 111 VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI           + F+  N++ +    +++T  ++P         L SR      
Sbjct: 241 LLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLT 300

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V +  P+ +    +++K      I +D+ +A +I + +  ++   E  + ++   +   G
Sbjct: 301 VAVEPPELEMRVAILLKKALMEDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTG 360

Query: 228 MGITRSLAAEVLKET 242
             +T  LA E LK+ 
Sbjct: 361 HALTLDLAREALKDL 375


>gi|332296670|ref|YP_004438592.1| Chromosomal replication initiator protein dnaA [Treponema
           brennaborense DSM 12168]
 gi|332179773|gb|AEE15461.1| Chromosomal replication initiator protein dnaA [Treponema
           brennaborense DSM 12168]
          Length = 513

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 79/233 (33%), Gaps = 25/233 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87
               + D+ +             +    P R    +++ G  G GK+ L     ++    
Sbjct: 174 NPNYTFDNFVTGDDNSFVYNAALAVSKNPGRTYNPLLIYGGVGLGKTHLMEAIGNEVYKS 233

Query: 88  SRSTRFSNIAKSLDSILIDT---------------RKPVLLEDID---LLDFNDTQLFHI 129
           S        A++  +  I +                  +L++DI      D    +LFH 
Sbjct: 234 SGGNIVYITAENFTNEFIQSINTKTQSKFKSKYRNADILLIDDIHFFQDKDGTQEELFHT 293

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++++    L+ T              L SR +    V I +P  +    ++ +     
Sbjct: 294 FNALYENFKQLVFTCDRPVSELKNMTDRLRSRFERGLSVDIHMPKYEIRRAILERKLQSM 353

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              +  ++   I Q ++ ++   E  + KM       G  +T  +A + L++T
Sbjct: 354 GKKVPGEVIDLIAQNVQTNVRDLEASLTKMVAYIELTGKDLTIDVARKELRDT 406


>gi|288904224|ref|YP_003429445.1| Chromosomal replication initiator protein DnaA [Streptococcus
           gallolyticus UCN34]
 gi|306832484|ref|ZP_07465636.1| DNA-directed DNA replication initiator protein [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325977201|ref|YP_004286917.1| Chromosomal replication initiator protein dnaA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288730949|emb|CBI12493.1| Chromosomal replication initiator protein DnaA [Streptococcus
           gallolyticus UCN34]
 gi|304425384|gb|EFM28504.1| DNA-directed DNA replication initiator protein [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325177129|emb|CBZ47173.1| Chromosomal replication initiator protein dnaA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 451

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 85/262 (32%), Gaps = 36/262 (13%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68
           VP  QKN  P                 + D+ +       A     +    P      + 
Sbjct: 97  VPTTQKNTLP-------LVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTYNPLF 149

Query: 69  LVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTRKP 110
           + G  G GK+ L N   +                              +++ +    R  
Sbjct: 150 IWGGPGLGKTHLLNAIGNAVLQNNPNARVKYITAENFINEFVIHIRLDTMEELKEKFRNL 209

Query: 111 --VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
             +L++DI  L          + F+  N+++  +  +++T+   P         L +R K
Sbjct: 210 DVLLIDDIQSLAKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFK 269

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NL 222
               + I+ PD +    ++     +      +    Y+  + + ++   E  +  +    
Sbjct: 270 WGLTINITPPDFETRVAILTNKTQEYNYIFPQDTIEYLAGQFDSNVRDLEGALKDISLVA 329

Query: 223 ALSRGMGITRSLAAEVLKETQQ 244
           ++ +   IT  +AAE ++  +Q
Sbjct: 330 SIKKIETITVDVAAEAIRARKQ 351


>gi|108761581|ref|YP_628287.1| chromosomal replication initiator protein DnaA [Myxococcus xanthus
           DK 1622]
 gi|108465461|gb|ABF90646.1| chromosomal replication initiator protein DnaA [Myxococcus xanthus
           DK 1622]
          Length = 450

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 29/235 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86
               + D  +V  + +       +    P      + + G +G GK+ L       IW  
Sbjct: 116 NARFTFDTFVVADSNQLPAAAAQAVADKPGHHYNPLYIYGGTGLGKTHLLQAVGNLIWER 175

Query: 87  KSRSTRFSNIAKSLDSILIDTRK----------------PVLLEDIDLLDFNDT---QLF 127
                     ++   +  +++ +                 +LL+DI  L   +    + F
Sbjct: 176 DPSQRVVFLSSEQFTNEYVESVREHRMGDFRRKFREECDVLLLDDIQFLGKREETQKEFF 235

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++++ + ++++T+ T P         L SR     +  I  P  +    ++ K   
Sbjct: 236 YTFNTLYEMNKAIVLTSDTVPAEIPGLEDRLRSRFAMGLMTDIREPTYETRVAILQKKAV 295

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGITRSLAAEVLKE 241
              + +   +A +I + +++++   E  + K+    +L+R   +T   A++VL++
Sbjct: 296 AEGLDLPDSVAHFIAKHIQKNVRELEGALVKLSAVHSLTRQ-PVTEDFASQVLRD 349


>gi|111115264|ref|YP_709882.1| chromosomal replication initiator protein [Borrelia afzelii PKo]
 gi|216263632|ref|ZP_03435627.1| chromosomal replication initiator protein DnaA [Borrelia afzelii
           ACA-1]
 gi|123046987|sp|Q0SN72|DNAA_BORAP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|110890538|gb|ABH01706.1| chromosomal replication initiator protein [Borrelia afzelii PKo]
 gi|215980476|gb|EEC21297.1| chromosomal replication initiator protein DnaA [Borrelia afzelii
           ACA-1]
          Length = 485

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++    + A      I   P       ++ G  G GK+ L     +K+     
Sbjct: 145 RYTFENFIIGPNNKLAYNASLSISKNPGTKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 204

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 205 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 264

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    +I K   +  
Sbjct: 265 NALYEDNKQLVFTCDRPPSELTNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 325 IKVPKNILNLVAQKVTTNVRDLEAAVTKL 353


>gi|294813740|ref|ZP_06772383.1| Chromosomal replication initiator protein dnaA [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326339|gb|EFG07982.1| Chromosomal replication initiator protein dnaA [Streptomyces
           clavuligerus ATCC 27064]
          Length = 597

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 259 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 318

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 319 YPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKESTQEEFFH 378

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L +R +      +  P+ +    ++ K    
Sbjct: 379 TFNTLHNANKQIVLSSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAVQ 438

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 439 EQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 492


>gi|167951344|ref|ZP_02538418.1| chromosomal replication initiator protein DnaA [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 424

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 83/235 (35%), Gaps = 26/235 (11%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87
             + +  +   + + A      I S P      + + G  G GK+ L +   +       
Sbjct: 92  SFTFESFVEGKSNQLARAASMQIASNPGKAYNPLFIYGGVGLGKTHLMHAVGNAILSENP 151

Query: 88  -------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHII 130
                        +++ ++L    ID       +   +L++DI      +    + FH  
Sbjct: 152 NAKVLYLHSERFVADMVRALQHNKIDEFKKRYRSVNALLIDDIQFFAGKERSQEEFFHTF 211

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++ +    +++++  FP         L SR      V I  PD +    ++        
Sbjct: 212 NALFESQQQIILSSDRFPKEVKGLEERLKSRFGWGLTVAIEPPDLETRVAILKSKALQLN 271

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + +  ++A +I +++  ++   E  + ++   +   G  I+   +   L++    
Sbjct: 272 VELGDEVAFFIGKKIRSNIRELEGALRRVVANSTFTGKEISIEFSKNALRDMLAA 326


>gi|300865784|ref|ZP_07110539.1| Chromosomal replication initiator protein dnaA [Oscillatoria sp.
           PCC 6506]
 gi|300336225|emb|CBN55694.1| Chromosomal replication initiator protein dnaA [Oscillatoria sp.
           PCC 6506]
          Length = 452

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 30/231 (12%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75
           D P++   Q                +V S    A     +    P R    + L G  G 
Sbjct: 98  DIPESHSHQQPKPANLNPKYIFARFVVGSNNRMAHAASLAVAESPGREFNPLFLCGGVGL 157

Query: 76  GKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKP---VLLED 115
           GK+ L                     ++K  +   + I K       D  +    +L++D
Sbjct: 158 GKTHLMQAIGHYRLEIDPDAKIFYVSTEKFTNDLIAAIRKDSMQSFRDNYRAADVLLVDD 217

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I  ++  +    + FH  N++H+    +++ +   P         LCSR     +  I L
Sbjct: 218 IQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQIPRLQERLCSRFSMGLIADIQL 277

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKM 219
           PD +    ++ K      + + + +  YI    +   R L     + V  +
Sbjct: 278 PDLETRMAILQKKAEYENMRLPRDVIEYIASSYKSNIRELEGALIRAVAYL 328


>gi|329938638|ref|ZP_08288034.1| chromosomal replication initiator protein [Streptomyces
           griseoaurantiacus M045]
 gi|329302129|gb|EGG46021.1| chromosomal replication initiator protein [Streptomyces
           griseoaurantiacus M045]
          Length = 721

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 382 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 441

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 442 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 501

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 502 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 560

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+    ++  +I  R+ R++   E  + ++   A      +   L   VLK+ 
Sbjct: 561 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 615


>gi|295108627|emb|CBL22580.1| chromosomal replication initiator protein DnaA [Ruminococcus obeum
           A2-162]
          Length = 459

 Score = 99.5 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 86/236 (36%), Gaps = 29/236 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86
                 D  +V +  + A     +    P      + + G +G GK+ L +     I   
Sbjct: 119 NPKYIFDTFIVGNNNKFAQAAALAVAESPGDTYNPLFIYGGAGLGKTHLMHSIAHYIIEH 178

Query: 87  KSRSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQ 125
              S      ++   + LI+T +                   +L++DI  +   +    +
Sbjct: 179 DENSKVLYVTSEEFTNELIETIRNGNNSAMSKFREKYRNIDVLLVDDIQFIIGKESTQEE 238

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+H     +++++   P    +      SR +   +  I+LPD +    ++ K 
Sbjct: 239 FFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDYETRMAILHKK 298

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                  I +++  YI   ++ ++   E   +K+   +      +T  LA + LK+
Sbjct: 299 EEMEGYNISEEVIKYIATNIKSNIRELEGAFNKVMASSKLEKKEVTLELAEQALKD 354


>gi|300778760|ref|ZP_07088618.1| DNA-directed DNA replication initiator protein [Chryseobacterium
           gleum ATCC 35910]
 gi|300504270|gb|EFK35410.1| DNA-directed DNA replication initiator protein [Chryseobacterium
           gleum ATCC 35910]
          Length = 484

 Score = 99.1 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 78/259 (30%), Gaps = 37/259 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSR 65
           F VP  +K +                   S D  +   +       A  +     +    
Sbjct: 134 FVVPGIRKVN----------IDSNLKPDYSFDSYVEGESNKFAATVARSIAKRPGATAFN 183

Query: 66  VVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108
            + L G  G GK+ L                     S+K      S       +   +  
Sbjct: 184 PLFLYGGYGVGKTHLGQAVGLEVKNQFPDKVVLYLSSEKFIQQFISAAKAHKQTEFANFY 243

Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + V   +++DI  L          FHI + +HQ    +++T+   P         + SR 
Sbjct: 244 QMVDVLIIDDIQFLSGKSATQDSFFHIFDHLHQNGKQIILTSDKAPADIMDIQDRIVSRF 303

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           K     +I  PD     ++I    +   I +   +  ++    + ++     +++ +   
Sbjct: 304 KWGLSAEIKSPDLSTRRQIIEDKLSRDGIVLPGDMLDFLAAEAKTNVRELIGVINSVIAY 363

Query: 223 ALSRGMGITRSLAAEVLKE 241
           +      ++  L  E +  
Sbjct: 364 STVYKRDLSLELLKETINR 382


>gi|257065521|ref|YP_003151777.1| chromosomal replication initiator protein DnaA [Anaerococcus
           prevotii DSM 20548]
 gi|256797401|gb|ACV28056.1| chromosomal replication initiator protein DnaA [Anaerococcus
           prevotii DSM 20548]
          Length = 459

 Score = 99.1 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 34/209 (16%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSRV--------VILVGPSGSGKSCLANIWS------ 85
             + +   + + A+ +  +     S          + + G SG GK+ L    +      
Sbjct: 125 FANFVEGKSNQYALGVSQAVAENISNKSQARLYNPLFIYGESGLGKTHLMQAIAHEILDN 184

Query: 86  -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                      +K  +   S +  + +    +  + V   L++DI  +   +    + FH
Sbjct: 185 RDDAYVMYLSSEKFTNEMISALRSTKNEKFREKYRSVDILLIDDIQFIAGKEGTQEEFFH 244

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++     +++++   P         L SR     +V I  PD +    ++ K    
Sbjct: 245 TFNDLYNTGKQIVISSDRPPKEIKHLENRLISRFSWGIIVDIGKPDFETRVAILQKKLDQ 304

Query: 189 RQIFIDKKLAAYIVQRME---RSLVFAEK 214
              +ID  +  YI + ++   R L  A  
Sbjct: 305 LGAYIDNNILFYIAENIDTNIRDLEGALS 333


>gi|261840200|gb|ACX99965.1| chromosomal replication initiator protein DnaA [Helicobacter pylori
           52]
          Length = 455

 Score = 99.1 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 84/235 (35%), Gaps = 24/235 (10%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + ++ +V S       +          P   V+  G +G GK+ + N   + +  
Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167

Query: 91  TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129
                +  + +  L D  K +                  LL+D   L      + + FH 
Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++ +   P +       L SR +     K+  PD +    ++ +     
Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +I + +++  YI Q +  ++   E  + K+   A      I  +LA  +L++ Q+
Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTILEDLQK 342


>gi|254463654|ref|ZP_05077065.1| chromosomal replication initiator protein DnaA [Rhodobacterales
           bacterium Y4I]
 gi|206684562|gb|EDZ45044.1| chromosomal replication initiator protein DnaA [Rhodobacterales
           bacterium Y4I]
          Length = 470

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 85/244 (34%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A                 ++L G  G GK+ L +   W  K
Sbjct: 129 PLDPRFTFDSFVVGKPNELAHAAARRVGEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 188

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
            ++   + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 189 EKNPHLNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 248

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++  K+
Sbjct: 249 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQTKV 308

Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              R+    + I   +  ++  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 309 QQQRETYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMDLTQDCLAD 368

Query: 242 TQQC 245
             + 
Sbjct: 369 VLRA 372


>gi|116668569|ref|YP_829502.1| chromosomal replication initiator protein DnaA [Arthrobacter sp.
           FB24]
 gi|116608678|gb|ABK01402.1| chromosomal replication initiator protein DnaA [Arthrobacter sp.
           FB24]
          Length = 474

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ S+      A   +   P+     + + G SG GK+ L +     +R  
Sbjct: 134 NPKYVFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYARRL 193

Query: 91  -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFNDTQL---FH 128
                 R+ N  +  +  +   R                +L++DI  L   D  L   FH
Sbjct: 194 YSGIRVRYVNSEEFTNDFINSIRDDEGTSFKTTYRNVDVLLIDDIQFLAGKDRTLEEFFH 253

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++T+   P         + SR +   +  I  P+ +    ++ K    
Sbjct: 254 TFNALHNNNKQVVITSDQPPKLLAGFEDRMKSRFEWGLLTDIQPPELETRIAILRKKALS 313

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +        YI  ++  ++   E  + ++   A      +  +LA  VLK+ 
Sbjct: 314 EGLSAPDDALEYIASKISSNIRELEGALIRVTAFASLNRQPVDVALAEMVLKDL 367


>gi|260579561|ref|ZP_05847432.1| replication initiator protein [Corynebacterium jeikeium ATCC 43734]
 gi|258602332|gb|EEW15638.1| replication initiator protein [Corynebacterium jeikeium ATCC 43734]
          Length = 583

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 92/264 (34%), Gaps = 34/264 (12%)

Query: 17  KNDQPKNKEEQLFFSFP--------RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           ++  P     Q   SF              + ++ +V S+   A     +    P++   
Sbjct: 218 RHTSPHTPSPQPSSSFNDGLDGESLLNKNYTFENFVVGSSNNFAAAACRAVAEAPAKAYN 277

Query: 67  -VILVGPSGSGKSCLANIWSDKSRSTR-----------------FSNIAKSLDSILIDTR 108
            + + G SG GK+ L +     ++  +                  ++IA           
Sbjct: 278 PLFIWGESGLGKTHLLHAIGHYAKELQPNMRVKYVSSEELTNDFINSIANDTRESFKRRY 337

Query: 109 K---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           +    ++++DI  L   +    + FH  N++HQ +  +++++   P         L +R 
Sbjct: 338 RNLDMLIVDDIQFLQNKESTQEEFFHTFNALHQANKQIVLSSDRPPRQLTTLEDRLRTRF 397

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   +  +  PD +    ++ K      + + + +   I  R E+S+   +  + ++   
Sbjct: 398 EGGLITDVQTPDLETRIAILTKKAESDNVQLPEDVKVLIASRYEKSIRELDGALIRVTAY 457

Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246
                  +T   A   L++    D
Sbjct: 458 CALSHEPLTVETAEIALRDISPAD 481


>gi|56695074|ref|YP_165421.1| chromosomal replication initiation protein [Ruegeria pomeroyi
           DSS-3]
 gi|71151804|sp|Q5LWV4|DNAA_SILPO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56676811|gb|AAV93477.1| chromosomal replication initiator protein DnaA [Ruegeria pomeroyi
           DSS-3]
          Length = 468

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A                 ++L G  G GK+ L +   W  K
Sbjct: 127 PLDPRFTFDSFVVGKPNELAHAAARRVSEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 186

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
            +    + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 187 VKRPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 246

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++    
Sbjct: 247 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQTKV 306

Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              +     + I   +  ++  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 307 QMYRTTYPDLVIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMELTQDCLAD 366

Query: 242 TQQC 245
             + 
Sbjct: 367 VLRA 370


>gi|220910784|ref|YP_002486093.1| chromosomal replication initiator protein DnaA [Arthrobacter
           chlorophenolicus A6]
 gi|219857662|gb|ACL38004.1| chromosomal replication initiator protein DnaA [Arthrobacter
           chlorophenolicus A6]
          Length = 473

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ S+      A   +   P+     + + G SG GK+ L +     +R  
Sbjct: 133 NPKYVFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYARRL 192

Query: 91  -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFNDTQL---FH 128
                 R+ N  +  +  +   R                +L++DI  L   D  L   FH
Sbjct: 193 YSGIRVRYVNSEEFTNDFINSIRDDEGASFKTTYRNVDVLLIDDIQFLAGKDRTLEEFFH 252

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS+H  +  +++T+   P         + SR +   +  I  P+ +    ++ K    
Sbjct: 253 TFNSLHNNNKQVVITSDQPPKLLAGFEDRMKSRFEWGLLTDIQPPELETRIAILRKKALS 312

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +        YI  ++  ++   E  + ++   A      +  +LA  VLK+ 
Sbjct: 313 EGLSAPDDALEYIASKISSNIRELEGALIRVTAFASLNRQPVDVALAEMVLKDL 366


>gi|166032891|ref|ZP_02235720.1| hypothetical protein DORFOR_02612 [Dorea formicigenerans ATCC
           27755]
 gi|166027248|gb|EDR46005.1| hypothetical protein DORFOR_02612 [Dorea formicigenerans ATCC
           27755]
          Length = 462

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 83/252 (32%), Gaps = 42/252 (16%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
               + D  +V      A      +   P      + L G  G GK+ L +  +      
Sbjct: 114 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHFILDK 173

Query: 87  ----------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123
                                 ++  T  +  A             +L++DI  +   + 
Sbjct: 174 NPKKKVLYVTSETFTNELIDALRNGKTAGNESAMLNFRDKYRNIDVLLIDDIQFIIGKES 233

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N +H     +++++   P         L +R +   +  IS PD +    +
Sbjct: 234 TQEEFFHTFNHLHTLGKQIIISSDKPPKDIETLESRLRTRFEWGLIADISSPDYETRMAI 293

Query: 182 IVKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR----GMGITRSL 234
           + K      +    I   +  YI   ++ ++   E  ++K+  +AL +       I  +L
Sbjct: 294 LQKKIELDHLEKYNIKNDVLDYIAANVKSNIRELEGSLNKL--IALYKLNNNNNPIDIAL 351

Query: 235 AAEVLKETQQCD 246
           AAE LK+    D
Sbjct: 352 AAEALKDIISSD 363


>gi|227529862|ref|ZP_03959911.1| DNA-directed DNA replication initiator protein [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350231|gb|EEJ40522.1| DNA-directed DNA replication initiator protein [Lactobacillus
           vaginalis ATCC 49540]
          Length = 439

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 91/258 (35%), Gaps = 29/258 (11%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS---WPSWPSRVVILV 70
           D  +ND+P           P     +    +V    + A     +    P      + + 
Sbjct: 85  DPYQNDRPAESNN-FEMDTPLNPHYNFKTFVVGEGNKMAHAAAFAVAESPGGLYNPLFIY 143

Query: 71  GPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK---P 110
           G  G GK+ L                     S++  +    +I  +      +  +    
Sbjct: 144 GGVGLGKTHLMEAIGNHMLQLNPAAKVKYVTSEEFTNDFIHSIQSNSTEKFREEYRNLDL 203

Query: 111 VLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAAT 166
           +L++DI  L        + F+  N++H     ++MT+   P      L D L SR +   
Sbjct: 204 LLIDDIQFLANKEGTQLEFFNTFNALHDNKKQIVMTSDRIPNEIP-ELQDRLVSRFRWGL 262

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            V+I+ PD +    ++     +  I I      YI  +++ ++   E  + K+   +   
Sbjct: 263 TVEITPPDLETRIAILRSKVEEDHINIGNDTLNYIAGQIDTNIRELEGALTKVQAFSNLS 322

Query: 227 GMGITRSLAAEVLKETQQ 244
              IT  LA++ L+  Q+
Sbjct: 323 QEPITPHLASQALRGLQR 340


>gi|254437134|ref|ZP_05050628.1| chromosomal replication initiator protein DnaA [Octadecabacter
           antarcticus 307]
 gi|198252580|gb|EDY76894.1| chromosomal replication initiator protein DnaA [Octadecabacter
           antarcticus 307]
          Length = 446

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 31/242 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  +V    E A                 + L G  G GK+ L +  + +    
Sbjct: 107 NQRFNFDSFVVGKPNELAHAAAKRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELGLR 166

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
           R   + +  S D  +      +                  +++DI  L+  +    + FH
Sbjct: 167 RPDLNVLYVSADQFIYRFISALRDRKMMDFKQHFRSVDVLMVDDIQFLEGKESTQEEFFH 226

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++      ++++A   P         + SRL+   VV +   D +    ++      
Sbjct: 227 TYNALADQGKQMIISADRAPGEIRDLSERIKSRLQCGLVVDLHPTDYELRLGILHSKQEM 286

Query: 189 -----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                  + I   +  ++  R+  ++   E  ++++  LA   G  +T  +A + L +  
Sbjct: 287 FVNVYPGVEIATGVLEFLAHRISSNVRVLEGALNRLYALASLVGRVVTVEMAQDCLSDIL 346

Query: 244 QC 245
           + 
Sbjct: 347 RA 348


>gi|317496618|ref|ZP_07954965.1| chromosomal replication initiator protein DnaA [Gemella moribillum
           M424]
 gi|316913283|gb|EFV34782.1| chromosomal replication initiator protein DnaA [Gemella moribillum
           M424]
          Length = 343

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 81/241 (33%), Gaps = 38/241 (15%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSW-----PSWPSRVVILVGPSGSGKSCLANIWSDKSRS-- 90
            + ++ +V         +  +W     P      + + G  G GK+ L +   ++  +  
Sbjct: 5   YTFENFVVGEGNAFTHNI--AWNVAVEPGGIYNPLFIYGGVGLGKTHLLHAIGNEMENNF 62

Query: 91  ------------------TRFSNIAKSLDSILIDTRK------PVLLEDIDLLDF---ND 123
                                  +         D R+       +L++DI  L       
Sbjct: 63  PDFKIECISSEKFLNEFLASIKPMKNKNVGADEDFRRKYRDVDALLIDDIQFLSGKTETQ 122

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVI 182
              FH  N +      +++ +   P      L D L +R        I+ PD +    ++
Sbjct: 123 NAFFHTFNELQMNQKQIVLISDRSPSQLN-ELEDRLVTRFSQGITADITPPDFETRMAIL 181

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                   I + ++   YI   +  ++   E ++ ++   A S+    + ++A E+LK+T
Sbjct: 182 KYKCEQFDIQLSEETLTYISNNISSNIRELEGVLKRIKFTATSKNQPPSLAIAEEILKDT 241

Query: 243 Q 243
           +
Sbjct: 242 R 242


>gi|171778195|ref|ZP_02919424.1| hypothetical protein STRINF_00263 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283019|gb|EDT48443.1| hypothetical protein STRINF_00263 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 452

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 79/239 (33%), Gaps = 29/239 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKS--- 88
               + D+ +       A     +    P      + + G  G GK+ L N   +     
Sbjct: 114 NTKYTFDNFVQGDENRWAFSASYAVADAPGTTYNPLFIWGGPGLGKTHLLNAIGNAVLQN 173

Query: 89  ---------------RSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLD-----FNDTQL 126
                                    +++ +    R    +L++DI  L          + 
Sbjct: 174 NPKARVKYITAENFINEFVIHIRLDTMEELKEKFRNLDVLLIDDIQSLAKKTLSGTQEEF 233

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N+++  +  +++T+   P         L +R K    + I+ PD +    ++    
Sbjct: 234 FNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFKWGLTINITPPDFETRVAILTNKT 293

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLKETQQ 244
            +      +    Y+  + + ++   E  +  +    ++ +   IT  +AAE ++  +Q
Sbjct: 294 QEYDFVFPQDTIEYLAGQFDSNVRDLEGALKDISLVASIKKVQTITVDIAAEAIRARKQ 352


>gi|121607005|ref|YP_994812.1| chromosomal replication initiation protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121551645|gb|ABM55794.1| chromosomal replication initiator protein DnaA [Verminephrobacter
           eiseniae EF01-2]
          Length = 483

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 92/256 (35%), Gaps = 27/256 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69
           P  +     +++  Q          ++ + L+  SA   A          P  +   + +
Sbjct: 128 PGAESASAGRDEAPQ-ALRHRLNAALTFETLVEGSANRMARSAGMHVAGMPGHLYNPLFV 186

Query: 70  VGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---------------K 109
            G  G GK+ L +       + + ++      A+   S ++ +                 
Sbjct: 187 YGGVGLGKTHLVHAVGNRLLASRPQAKVLYVHAEQFVSDVVRSYQRRTFDEFKERYHSLD 246

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++D+      D    + F+   ++    S L+MT+ T+P         L SR  +  
Sbjct: 247 LLLIDDVQFFANKDRTQEEFFNAFEALLTKKSHLVMTSDTYPKGLSNIHERLVSRFDSGL 306

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            V I  P+ +    +++         + +++A ++ + +  ++   E  + K+   +   
Sbjct: 307 TVAIEPPELEMRVAILINKAQAESTEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFN 366

Query: 227 GMGITRSLAAEVLKET 242
              I+  LA E L++ 
Sbjct: 367 QKEISIQLAREALRDL 382


>gi|68535063|ref|YP_249768.1| chromosomal replication initiator protein [Corynebacterium jeikeium
           K411]
 gi|123775787|sp|Q4JYF7|DNAA_CORJK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|68262662|emb|CAI36150.1| chromosomal replication initiator protein [Corynebacterium jeikeium
           K411]
          Length = 583

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 92/264 (34%), Gaps = 34/264 (12%)

Query: 17  KNDQPKNKEEQLFFSFP--------RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           ++  P     Q   SF              + ++ +V S+   A     +    P++   
Sbjct: 218 RHTSPHTPSPQPSSSFNDGLDGESLLNKNYTFENFVVGSSNNFAAAACRAVAEAPAKAYN 277

Query: 67  -VILVGPSGSGKSCLANIWSDKSRSTR-----------------FSNIAKSLDSILIDTR 108
            + + G SG GK+ L +     ++  +                  ++IA           
Sbjct: 278 PLFIWGESGLGKTHLLHAIGHYAKELQPNMRVKYVSSEELTNDFINSIANDTRESFKRRY 337

Query: 109 K---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           +    ++++DI  L   +    + FH  N++HQ +  +++++   P         L +R 
Sbjct: 338 RNLDMLIVDDIQFLQNKESTQEEFFHTFNALHQANKQIVLSSDRPPRQLTTLEDRLRTRF 397

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   +  +  PD +    ++ K      + + + +   I  R E+S+   +  + ++   
Sbjct: 398 EGGLITDVQTPDLETRIAILTKKAESDNVQLPEDVKVLIASRYEKSIRELDGALIRVTAY 457

Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246
                  +T   A   L++    D
Sbjct: 458 CALSHEPLTVETAEIALRDISPAD 481


>gi|300112746|ref|YP_003759321.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           watsonii C-113]
 gi|299538683|gb|ADJ27000.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           watsonii C-113]
          Length = 449

 Score = 99.1 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 78/231 (33%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----------- 83
            + D  +   +      A   +   P      + + G  G GK+ L +            
Sbjct: 118 YTFDSFVEGKSNQLPRAASHQVAENPGSAYNPLFIYGGVGLGKTHLMHAVGNYIRSLNPS 177

Query: 84  ------WSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIIN 131
                  S++  +     +  +  +      + V   L++DI      +    + F+  N
Sbjct: 178 ARVVYLHSEQFVAEMIKALQLNAINEFKTRYRSVDILLIDDIQFFAGKERSQEEFFYTFN 237

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++ +    +++T   FP         L SR      V +  P+ +    +++   +   I
Sbjct: 238 TLLEVQHQIILTCDRFPKEVNGLEERLTSRFGWGLTVAVEPPELETRVAILMNKASIENI 297

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +   +A ++ + +  ++   E  + ++   +      IT  L  E LK+ 
Sbjct: 298 ILSDDVAFFLGRLIYSNVRELEGALRRVIAYSRFTHRPITMELTREALKDL 348


>gi|270284630|ref|ZP_05966430.2| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum
           DSM 20093]
 gi|270276567|gb|EFA22421.1| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum
           DSM 20093]
          Length = 560

 Score = 99.1 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 31/234 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIW------------ 84
            D+ +   + + A  +  +      R    + + G SG GK+ L N              
Sbjct: 224 FDNFVPGDSNQFARTVALAVAEGSGRDYNPLCIYGGSGLGKTHLLNAIGNYALVKDPSLK 283

Query: 85  ------SDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128
                  + +     S   +  D+  +        +   +L++DI  L        Q FH
Sbjct: 284 VRYVTTEEFTNEFIESIRPEGSDAKPMSEFNHRYRSVDVLLIDDIQFLSGKSQTMEQFFH 343

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ Q +  +++ +   P         L SR ++  VV +  P+ +    ++  M   
Sbjct: 344 TFNTLQQNNKRIVIASDVAPKKLRDFEDRLISRFESGLVVDVKPPELETRIAILRMMAET 403

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ + + +   I +    ++   E  + ++   A      ITR LA +VLK+ 
Sbjct: 404 NKVDVPRDVMDLIAEHCTENIRQLEGALTRVTAQATLNNQPITRILAEQVLKDY 457


>gi|322433660|ref|YP_004215872.1| chromosomal replication initiator protein DnaA [Acidobacterium sp.
           MP5ACTX9]
 gi|321161387|gb|ADW67092.1| chromosomal replication initiator protein DnaA [Acidobacterium sp.
           MP5ACTX9]
          Length = 492

 Score = 99.1 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 89/259 (34%), Gaps = 31/259 (11%)

Query: 14  DKQKNDQPKNKE-EQLFFSFPR----CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
             + N  P     EQ  F +            D  ++ S  + A     +    PS+   
Sbjct: 133 GARGNAAPAAPSTEQARFDWNAASQLNPRYQFDAFVIGSGNQFAAAAAQAVAERPSKAYN 192

Query: 67  -VILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTR----------- 108
            + L G  G GK+ L +    +        S  + +  K  + ++   R           
Sbjct: 193 PLFLYGGVGMGKTHLMHAIGHEVKRRMPHTSISYVSGEKFTNEMINSVRYDKMTTFRDKF 252

Query: 109 ---KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                +L++DI  L   +    + FH  N++H+    +++ +   P         L SR 
Sbjct: 253 RNVDVLLIDDIQFLAGKERTQEEFFHTFNALHETMKQIVIASDRPPKELADFEDRLRSRF 312

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   +  I  PD +    ++ +        +   +A +I   +  ++   E  + ++   
Sbjct: 313 EWGLIADIQPPDLETKVAILQRKAEAESTTLPTDVALFIASNVRTNVRELEGALIRVIAW 372

Query: 223 ALSRGMGITRSLAAEVLKE 241
               G+  +  +A + LK+
Sbjct: 373 CSHHGVECSLPVAQQCLKQ 391


>gi|297171395|gb|ADI22398.1| ATPase involved in DNA replication initiation [uncultured
           Planctomycetales bacterium HF0500_02G17]
          Length = 444

 Score = 98.7 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 28/221 (12%)

Query: 35  CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88
                 +D LV  +       A+R+ +         + L GPSG GK+ L    + ++  
Sbjct: 72  APRARLEDFLVGESNRLAHRAALRIAEGIDDAAFSPLFLHGPSGVGKTHLLEGIARRTQE 131

Query: 89  ---RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDF---NDTQLF 127
               +      A++  +  I+                   + ++D+  L       T+L 
Sbjct: 132 RNPGARVRYVTAEAFTNEFINAIQNRGMDSFRKTWRGVTLLCIDDVHFLRGKQSTQTELL 191

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H ++++    + +++ +   P         L SR     VV+I  PDD    +++V + A
Sbjct: 192 HTLDAVGLRQARIVLASDEPPRKIAELSDQLVSRFMGGAVVRIDEPDDALCRQLLVALAA 251

Query: 188 DRQIFIDKKLAAYIVQR-MERSLVFAEKLVDKMDNLALSRG 227
            R +   +   + +VQR +E++     ++   +  +A  R 
Sbjct: 252 RRGLVFTEDGISMLVQRALEQNRRNVREIEGLLTQVAAVRR 292


>gi|259417770|ref|ZP_05741689.1| chromosomal replication initiator protein DnaA [Silicibacter sp.
           TrichCH4B]
 gi|259346676|gb|EEW58490.1| chromosomal replication initiator protein DnaA [Silicibacter sp.
           TrichCH4B]
          Length = 470

 Score = 98.7 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 85/244 (34%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A                 ++L G  G GK+ L +   W  K
Sbjct: 129 PLDPRFTFDSFVVGKPNELAHAAARRVGEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 188

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
            R+   + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 189 ERNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 248

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++  K+
Sbjct: 249 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQTKV 308

Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             +R+    + I   +   +  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 309 QQNRKNYPDLKIADGVLELLAHRISTNVRVLEGALTRLFAFASLVGREIDMDLTQDCLAD 368

Query: 242 TQQC 245
             + 
Sbjct: 369 VLRA 372


>gi|238915977|ref|YP_002929494.1| chromosomal replication initiator protein DnaA [Eubacterium eligens
           ATCC 27750]
 gi|238871337|gb|ACR71047.1| chromosomal replication initiator protein DnaA [Eubacterium eligens
           ATCC 27750]
          Length = 451

 Score = 98.7 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 85/241 (35%), Gaps = 34/241 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  +V +    A     +    P ++   + + G +G GK+ L    +      
Sbjct: 115 NPNYTFDTFVVGTNNNLAHAASLAVAETPGQIYNPLFIYGGAGLGKTHLMQAIAH---FI 171

Query: 92  RFSNIAKSLDSILIDTRKPVLLE---------------DIDLLDFND-----------TQ 125
             S+ +K +  +  +T    L+E               +ID+L  +D            +
Sbjct: 172 IASDPSKKVLYVTSETFTNELIESVKTNKNTEFRNKYRNIDVLLIDDIQFIIGKLSTQEE 231

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVK 184
            F+  N ++     +++++   P      LPD L +R ++   V I +P  +    +I K
Sbjct: 232 FFNTFNDLYLLGKQIVISSDRPPKEME-TLPDRLRTRFESGLPVDIQIPTYETKMAIINK 290

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 I    ++  Y+   +  S+   E  + K+   +      +T   A   LK+   
Sbjct: 291 KSEALGIDFPYEVKDYVATNITSSIRELEGALTKLSAYSKLSHTPLTAEFAENTLKDLIS 350

Query: 245 C 245
            
Sbjct: 351 P 351


>gi|89052492|ref|YP_507943.1| chromosomal replication initiation protein [Jannaschia sp. CCS1]
 gi|123287123|sp|Q28WI0|DNAA_JANSC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|88862041|gb|ABD52918.1| chromosomal replication initiator protein DnaA [Jannaschia sp.
           CCS1]
          Length = 475

 Score = 98.7 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 31/242 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWP---SWPSRVVILVGPSGSGKSCLANIWS-----D 86
               +  + +V    E A                 + L G  G GK+ L +  +      
Sbjct: 136 NPNFTFANFVVGKPNELAHAAARRVAETLDVTFNPLFLYGGVGLGKTHLMHAIAWDLQDR 195

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDF---NDTQLFH 128
              +      A+      +   +                ++++D+  +        + FH
Sbjct: 196 HPDAKILFLSAEQFMHRFVRALREQDTFNFKETFRSVDILMVDDVQFIAGKTSTQQEFFH 255

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    ++++    PV        + SRL+   VV I   D +    V+      
Sbjct: 256 TFNALVEMGKQIVISGDRAPVDMEELDNRIASRLQCGLVVDIHPTDYELRLGVLQHKAEL 315

Query: 189 RQIFIDK-----KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                        +  Y+ Q++  ++   E  + ++   A      +T  LA E L +  
Sbjct: 316 LGAKYPHITFATGVLEYLAQKISSNVRVLEGALTRLFAFADLVRREVTVDLAKECLTDVL 375

Query: 244 QC 245
           + 
Sbjct: 376 RA 377


>gi|163745035|ref|ZP_02152395.1| chromosomal replication initiation protein [Oceanibulbus indolifex
           HEL-45]
 gi|161381853|gb|EDQ06262.1| chromosomal replication initiation protein [Oceanibulbus indolifex
           HEL-45]
          Length = 453

 Score = 98.7 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 82/250 (32%), Gaps = 32/250 (12%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI 83
           QL  + P     S D+ +V    E A                 + L G  G GK+ L + 
Sbjct: 107 QLSTA-PLDPRFSFDNFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHA 165

Query: 84  WSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND 123
            + +    R       L +                     +  +   ++++D+  +   D
Sbjct: 166 IARELHERRPDMNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKD 225

Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + FH  N++      ++++A   P         + SRL+   +V +   D +    
Sbjct: 226 STQEEFFHTFNALVDQHKQIIISADRAPGEIKDLEDRVKSRLQCGLIVDLHPTDYELRLG 285

Query: 181 VIVKMFA-DRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           ++       R+    + +   +  ++  R+  ++   E  + ++   A   G  I   L 
Sbjct: 286 ILQSKVEVQRKTYPDLEVADGVLEFLAHRITSNVRVLEGALTRLFAFASLVGREIDMGLT 345

Query: 236 AEVLKETQQC 245
            + L +  + 
Sbjct: 346 QDCLADVLRA 355


>gi|269793359|ref|YP_003312814.1| chromosomal replication initiator protein DnaA [Sanguibacter
           keddieii DSM 10542]
 gi|269095544|gb|ACZ19980.1| chromosomal replication initiator protein DnaA [Sanguibacter
           keddieii DSM 10542]
          Length = 490

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD----K 87
                 +  ++ S+      A   +   P+     + + G SG GK+ L +         
Sbjct: 151 NPKYLFETFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAYNL 210

Query: 88  SRSTRFSNIAKS------LDSILIDTRKP----------VLLEDIDLLDFND---TQLFH 128
               R   +         ++SI  +              +L++DI  L   +    + FH
Sbjct: 211 YPGVRVKYVNSEEFTNDFINSIRDEKAGAFQRRYREVDFLLIDDIQFLQGKEQTMEEFFH 270

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++T+   P         L SR +   +  +  PD +    ++ K  + 
Sbjct: 271 TFNTLHNANKQVVITSDLPPKQLNGFEDRLRSRFEWGLITDVQPPDLETRIAILRKKASG 330

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++     +  YI  ++  ++   E  + ++   A      +  +LA  VLK+ 
Sbjct: 331 ERLAAPDDVLEYIASKISSNIRELEGALIRVTAFANLNRQQVDLALAEIVLKDL 384


>gi|114326825|ref|YP_743982.1| chromosomal replication initiation protein [Granulibacter
           bethesdensis CGDNIH1]
 gi|114314999|gb|ABI61059.1| chromosomal replication initiator protein dnaA [Granulibacter
           bethesdensis CGDNIH1]
          Length = 525

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 78/237 (32%), Gaps = 28/237 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS---DKSR 89
             S +  +V    E A          P+      + L G  G GK+ L +  +   ++  
Sbjct: 191 RFSFETFVVGKPNEFAYACARRVAESPASPGFNPLFLYGGVGLGKTHLMHAIAWELNRPG 250

Query: 90  STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLL---DFNDTQLFH 128
               S    S +  +      +                  +++D+  L   D    + FH
Sbjct: 251 RPPVSVAYMSAEKFMYRFIAAIRSQSTMEFKEELRSVDVLMVDDLQFLIGKDNTQEEFFH 310

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++      ++++A   P         L +RL    V  +     +    ++      
Sbjct: 311 TFNALVDAGKQIVVSADKSPSDLSGLEDRLRTRLGCGMVADLHATTFELRISILEAKVQK 370

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             + +  K+  ++  ++  ++   E  ++++   A   G  +T   A EVL +  + 
Sbjct: 371 AGVEVSPKVLEFLAHKITSNVRELEGALNRLIAHANLFGRALTLETAQEVLHDILKA 427


>gi|56477034|ref|YP_158623.1| chromosomal replication initiation protein [Aromatoleum aromaticum
           EbN1]
 gi|71151792|sp|Q5P4P0|DNAA_AROAE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|56313077|emb|CAI07722.1| Chromosomal replication iniciator protein DnaA [Aromatoleum
           aromaticum EbN1]
          Length = 481

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSDKSR 89
            + D L+   A + A          P      + + G  G GK+ L +     ++    R
Sbjct: 150 FTFDTLVTGRANDLARAAAMQVAQNPGTSYNPLFVYGGVGLGKTHLVHAIGNAVYRHNPR 209

Query: 90  ST-RFSNIAKSLDSILID--------------TRKPVLLEDI---DLLDFNDTQLFHIIN 131
           +  R+ ++      ++                +   +L++DI   +  +    + FH  N
Sbjct: 210 AVIRYVHVEDYYADVVRAYQQKSFDAFKRYYRSLDLLLIDDIQFFNNKNRTQEEFFHAFN 269

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++ +    +++T  T+P         L SR      V+I  P+ +    ++ K     ++
Sbjct: 270 ALTEARKQIVITCDTYPKDIQGLEDRLISRFDWGLTVQIEPPELEMRVAILQKKAEALRV 329

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +   +A  I + +  ++   E  ++K+   A   G GIT  +A + LK+    
Sbjct: 330 DLHDDVAFLIAKNLRSNVRELEGALNKVVAFARFHGRGITLEVAKDALKDLLNA 383


>gi|159026644|emb|CAO86578.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 444

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 77/233 (33%), Gaps = 28/233 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               +    +V      A     +    P R    + L G  G GK+ L           
Sbjct: 107 NPKYNFSRFVVGPTNRMAHAAALAVAELPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEL 166

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDFND---TQLFH 128
             +SR    S    + D I    +               +L++D+  ++  +    + FH
Sbjct: 167 YPQSRVFYVSTEQFTNDLITAIRQDSMESFRNHYRHADILLVDDLQFIEGKEYTQEEFFH 226

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H+    +++ +   P      L D L SR     V  I  PD +    ++ K   
Sbjct: 227 TFNTLHEAGKQVVLASDRLPKQIP-SLQDRLISRFSMGLVADIQAPDIETRMAILQKKAE 285

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +++  YI      ++   E  + +        G+ +T    A VL 
Sbjct: 286 YENLRLPREVIEYIALNYTSNIRELEGALIRATTYISISGLPMTVENIAPVLN 338


>gi|110807608|ref|YP_691128.1| chromosomal replication initiation protein [Shigella flexneri 5
           str. 8401]
 gi|110617156|gb|ABF05823.1| chromosomal replication initiation protein [Shigella flexneri 5
           str. 8401]
          Length = 443

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 84/240 (35%), Gaps = 37/240 (15%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQYDS 138
            K  +      ++     ++   +   +E+       +D L  +D Q F I N + +   
Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAIKNDLRKS-- 226

Query: 139 SLLMTARTFPVSWGVCLPD----------------LCSRLKAATVVKISLPDDDFLEKVI 182
                +  F   W V                    L SR      V I  P+ +    ++
Sbjct: 227 ----FSTPFTPCWKVSTDHSHLGSLFERDNGVEDRLKSRFGWGLTVAIEPPELETRVAIL 282

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 283 MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 342


>gi|325677520|ref|ZP_08157184.1| replication initiation protein DnaA [Rhodococcus equi ATCC 33707]
 gi|325551767|gb|EGD21465.1| replication initiation protein DnaA [Rhodococcus equi ATCC 33707]
          Length = 524

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 85/236 (36%), Gaps = 28/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +      
Sbjct: 186 NAKYTFDTFVIGASNRFAHAAAVAIAEAPARAYNPLFIWGASGLGKTHLLHA-AGHYAQR 244

Query: 92  RFSNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127
            F  +     S +    D    +                  L++DI  ++  +    + F
Sbjct: 245 LFPGLRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDDIQFIEGKEGIQEEFF 304

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K   
Sbjct: 305 HTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSKKAR 364

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             ++ +   +   I  R+ER++   E  + ++   A      +   LA  VL++  
Sbjct: 365 MDRLDVPHDVLELIASRIERNIRELEGALIRVTAFASLNRQALDLKLAEVVLRDLM 420


>gi|167759577|ref|ZP_02431704.1| hypothetical protein CLOSCI_01934 [Clostridium scindens ATCC 35704]
 gi|167662804|gb|EDS06934.1| hypothetical protein CLOSCI_01934 [Clostridium scindens ATCC 35704]
          Length = 461

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 41/246 (16%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
               + D  +V      A      +   P      + + G  G GK+ L +  +      
Sbjct: 114 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFIYGGVGLGKTHLMHSIAHFILDK 173

Query: 87  ----------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123
                                 K+  T  +  A S           +L++DI  +   + 
Sbjct: 174 NAKKKVLYVTSETFTNELIEALKNGRTAGNESAMSKFRDKYRNNDVLLIDDIQFIIGKES 233

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N +H     +++++   P         L +R +   +  IS PD +    +
Sbjct: 234 TQEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISAPDYETRMAI 293

Query: 182 IVKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG---ITRSLA 235
           + K      +    I + +  YI + ++ ++   E  ++K+  +AL +      I  SLA
Sbjct: 294 LQKKIELDHLEKYNIPRDVLQYIAENIKTNIRELEGSLNKL--IALYKLNNNDVIDISLA 351

Query: 236 AEVLKE 241
           +E LK+
Sbjct: 352 SEALKD 357


>gi|332668533|ref|YP_004451540.1| chromosomal replication initiator protein DnaA [Cellulomonas fimi
           ATCC 484]
 gi|332337570|gb|AEE44153.1| chromosomal replication initiator protein DnaA [Cellulomonas fimi
           ATCC 484]
          Length = 500

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 91/256 (35%), Gaps = 27/256 (10%)

Query: 14  DKQKNDQPKNKEE-QLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVIL 69
           D   +D+P      Q             +  ++ S+      A   +   P+     + +
Sbjct: 139 DPAVDDRPLPPGRKQAAEPARLNPKYQFETFVIGSSNRFAHAAAVAVAEAPAKAYNPLFI 198

Query: 70  VGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV- 111
            G SG GK+ L +                   S++  +   ++I++          + V 
Sbjct: 199 YGDSGLGKTHLLHAIGHYAYNLYPGVRVRYVNSEEFTNDFINSISEGKAGAFQRRYREVD 258

Query: 112 --LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
             L++DI  L   +    + FH  N++H  +  +++T+   P         + SR +   
Sbjct: 259 VLLIDDIQFLQGKEQTMEEFFHTFNTLHNANKQVVITSDLPPKQLNGFEDRMRSRFEWGL 318

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  +  PD +    ++ K     ++     +  YI  ++  ++   E  + ++   A   
Sbjct: 319 ITDVQPPDLETRIAILRKKAGSERLQAPPDVLEYIASKISTNIRELEGALIRVTAFANLN 378

Query: 227 GMGITRSLAAEVLKET 242
              +  SLA  VLK+ 
Sbjct: 379 RQQVDLSLAEIVLKDL 394


>gi|213027208|ref|ZP_03341655.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 168

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 13/133 (9%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114
           S  + L    G+G+S L +        +  +  +  + K    +      ++    V ++
Sbjct: 35  SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 94

Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +I+ +  ++     +F + N I +     LL+T    P    + LPDL SRL    + K+
Sbjct: 95  NIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154

Query: 171 SLPDDDFLEKVIV 183
               D+   + + 
Sbjct: 155 QPLSDEDKLQALQ 167


>gi|83950590|ref|ZP_00959323.1| chromosomal replication initiation protein [Roseovarius nubinhibens
           ISM]
 gi|83838489|gb|EAP77785.1| chromosomal replication initiation protein [Roseovarius nubinhibens
           ISM]
          Length = 468

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 82/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P       D  +V    E A                 + L G  G GK+ L +   W  +
Sbjct: 127 PLDPRFKFDTFVVGKPNELAHAAAKRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAWELQ 186

Query: 88  SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126
            +    + +  S +                    +  +   ++++D+  +   D    + 
Sbjct: 187 EQQPGLNVVYLSAEQFMYRFVQALRERKMMDFKEMFRSVDVLMVDDVQFIAGKDSTQEEF 246

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185
           FH  N++      ++++A   P         + SRL+   VV +   + +    ++  K+
Sbjct: 247 FHTFNALVDQRKQIIISADCAPGEIENLEERIRSRLQCGLVVDLHPTNYELRLGILQSKV 306

Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              R     + +   +  ++  R+ +++   E  + ++   A   G  IT  L  + L +
Sbjct: 307 EYYRGQYPDLMLADGVLEFLAHRITKNVRVLEGALTRLFAFASLVGQEITLELTQDCLAD 366

Query: 242 TQQC 245
             + 
Sbjct: 367 VLRA 370


>gi|88608587|ref|YP_506152.1| chromosomal replication initiator protein DnaA [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600756|gb|ABD46224.1| chromosomal replication initiator protein DnaA [Neorickettsia
           sennetsu str. Miyayama]
          Length = 474

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 98/270 (36%), Gaps = 35/270 (12%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISR--DDLLVHSAIEQAV-------RLIDSWPS 61
           FV  K  +++ +        +    +  SR  D  +V  + E A          ++   S
Sbjct: 110 FVKSKISSEKGRFDRGSFSENLSSSIDRSRTFDSFVVGKSNELAFTASKRVAEAVELPIS 169

Query: 62  WPSRVVILVGPSGSGKSCLAN--IWSDKSRSTRFSNIAKSLDSI---------------- 103
             +  + L G  G GK+ L +  +W  K+       I  S +                  
Sbjct: 170 GSNP-LFLYGGVGLGKTHLMHAIVWHIKANYADRRVIYLSAEKFMHKYITALKNKDMMSF 228

Query: 104 --LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
             +  +   ++++D+  +   +    + FH  N++ + +  L+++A   P         +
Sbjct: 229 KQIFRSVDVLMVDDVQFISGKESTQEEFFHTFNALIEQNKQLVISADRSPSDLQGVEERI 288

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            SRL    V  I+    +    ++          + + KK+  ++ + +  ++   E  +
Sbjct: 289 QSRLSWGLVADINQTTFELRVGILESKLEQMKSDVVVPKKVVEFMARNIVSNVRELEGAL 348

Query: 217 DKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           +K+   +   G  +T   A ++L +  + +
Sbjct: 349 NKVIAHSEITGSVVTVDSAKDLLADILRTN 378


>gi|217968466|ref|YP_002353700.1| chromosomal replication initiation protein [Thauera sp. MZ1T]
 gi|217505793|gb|ACK52804.1| chromosomal replication initiator protein DnaA [Thauera sp. MZ1T]
          Length = 500

 Score = 98.7 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 93/263 (35%), Gaps = 33/263 (12%)

Query: 16  QKNDQPKNKEEQLF--FSFPRC-----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---R 65
           ++   P++   +                  + D L+   A + A          P     
Sbjct: 140 RRAAAPRSHSSEPSSGLDLAYEKTRLNPDFTFDTLVTGRANDLARAAAMQVAQNPGTSYN 199

Query: 66  VVILVGPSGSGKSCLAN-----IWSDKSRST-RFSNIAKSLDSILID------------- 106
            + + G  G GK+ L +     ++    R+  R+ ++      ++               
Sbjct: 200 PLFVYGGVGLGKTHLVHAIGNAVFRHNPRAVIRYVHVEDYYADVVRAYQQKSFDAFKRYY 259

Query: 107 -TRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
            +   ++++DI   +  +    + FH  N++ +    +++T  T+P         L SR 
Sbjct: 260 RSLDMLIIDDIQFFNNKNRTQEEFFHAFNALTEARKQIVITCDTYPKDIQGLEDRLISRF 319

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
                V+I  P+ +    ++ K     ++ +D  +A  I + +  ++   E  ++K+   
Sbjct: 320 DWGLTVQIEPPELEMRVAILKKKAEALRVLVDDDVAFLIAKNLRSNVRELEGALNKVVAY 379

Query: 223 ALSRGMGITRSLAAEVLKETQQC 245
           A   G  I   +A E LK+    
Sbjct: 380 ARFHGRQIGLEVAKEALKDLLHA 402


>gi|317401672|gb|EFV82297.1| chromosomal replication initiator protein dnaA [Achromobacter
           xylosoxidans C54]
          Length = 372

 Score = 98.3 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 27/232 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89
           ++ ++ +   A + A          P      + L G  G GK+ L +       +  + 
Sbjct: 40  LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 99

Query: 90  STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136
                  A    S ++   +    +D       +DLL  +D Q F   N   +       
Sbjct: 100 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 159

Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                   +++T+ T+P         L SR  +   V I  P+ +    ++++      +
Sbjct: 160 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 219

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242
            + +++A +I + +  ++   E  + K+   A   G  + T  +  E LK+ 
Sbjct: 220 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDL 271


>gi|119896293|ref|YP_931506.1| chromosomal replication initiation protein [Azoarcus sp. BH72]
 gi|166201859|sp|A1K1B4|DNAA_AZOSB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|119668706|emb|CAL92619.1| chromosomal replication initiator protein [Azoarcus sp. BH72]
          Length = 480

 Score = 98.3 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKS------ 88
            + D L+   A + A          P      + + G  G GK+ L +   +        
Sbjct: 149 FTFDTLVTGRANDLARAAAMQVAQNPGTSYNPLFVYGGVGLGKTHLVHAIGNAVYRHNPR 208

Query: 89  RSTRFSNIAKSLDSILID--------------TRKPVLLEDI---DLLDFNDTQLFHIIN 131
              R+ ++      ++                +   ++++DI   +  +    + FH  N
Sbjct: 209 MVIRYVHVEDYYADVVRAYQQKSFDAFKRYYRSLDMLIIDDIQFFNNKNRTQEEFFHAFN 268

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++ +    +++T  T+P         L SR      V+I  P+ +    ++ K     ++
Sbjct: 269 ALTEAKKQIVITCDTYPKDIQGLEDRLISRFDWGLTVQIEPPELEMRVAILQKKAEALRV 328

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +D  +A  I + +  ++   E  ++K+   A   G GI+  +A E LK+    
Sbjct: 329 SVDDDVAFLIAKNLRSNVRELEGALNKVVAYARFHGRGISLEVAKEALKDLLHA 382


>gi|89069837|ref|ZP_01157172.1| chromosomal replication initiation protein [Oceanicola granulosus
           HTCC2516]
 gi|89044638|gb|EAR50754.1| chromosomal replication initiation protein [Oceanicola granulosus
           HTCC2516]
          Length = 452

 Score = 98.3 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 76/242 (31%), Gaps = 31/242 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  +V      A                 + L G +G GK+ L +  +   R  
Sbjct: 113 EERYTFDTFVVGKPNALAHAAARRVAEGGPVAYNPLFLYGGNGLGKTHLMHAIAHDMRQN 172

Query: 92  R--FSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQLFH 128
           R     +  S D                       +   ++++D+  +   D    + FH
Sbjct: 173 RPELDVLYLSADQFMYRFVTALRERKMMDFKHFFRSVDVLMVDDVQFIAGKDSTQEEFFH 232

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++      ++++A   P         + SRL +  VV +   D +    ++      
Sbjct: 233 TFNALADAGKQIVISADCAPGEIRDLENRISSRLASGLVVDLHPTDYELRLGILQSKVEQ 292

Query: 189 RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            +     + +   +  ++  R+  ++   E  + ++   A   G  I   L  + L +  
Sbjct: 293 YRSQHPELVVADGVLEFLAHRISNNVRVLEGSLTRLFAFASLVGKEINLELTQDCLADIL 352

Query: 244 QC 245
           + 
Sbjct: 353 RA 354


>gi|299768251|ref|YP_003730277.1| chromosomal replication initiation protein [Acinetobacter sp. DR1]
 gi|298698339|gb|ADI88904.1| chromosomal replication initiation protein [Acinetobacter sp. DR1]
          Length = 468

 Score = 98.3 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 97/268 (36%), Gaps = 38/268 (14%)

Query: 5   KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------- 57
           KE  S   P       PK  +++L          +    +   + + A            
Sbjct: 108 KEPESVSSPHANSVVNPKTSKKKLL-----NPQFTFSLFVEGRSNQMAAETCRKVLTQLG 162

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---- 108
           +    P   + L GP+G GK+ L           K  +      ++S     + +     
Sbjct: 163 ASQHNP---LFLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGK 219

Query: 109 -----------KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI LL   +  L   F+  N++      +++T+  +P      
Sbjct: 220 VEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTEL 279

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L SR      V +  PD +   ++++K   +  + + +  A +I Q++  ++   E 
Sbjct: 280 DPRLVSRFSWGLSVGVEPPDIETRIEILLKKAENSGVDLPRNCALFIAQQVVANVRELEG 339

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++K+  ++  +G  I   +  E LK+ 
Sbjct: 340 ALNKVVAISRFKGAPIDLDVVRESLKDV 367


>gi|144900240|emb|CAM77104.1| chromosomal replication initiator protein DnaA [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 458

 Score = 98.3 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 83/238 (34%), Gaps = 28/238 (11%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
               +  + +V          AVR+ ++        + L G  G GK+ L +  +   R 
Sbjct: 124 DPRFTFKNFVVGKPNEFAHAAAVRVAEATAV-SFNPLFLYGGVGLGKTHLMHAIAHHIRE 182

Query: 91  ----------------TRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---TQLF 127
                            RF    +S D++    +      ++++D+  +   D    + F
Sbjct: 183 HNPARRVLYLSAEKFMYRFIRALRSQDTMSFKEQFRSVDVLMVDDVQFIAGKDATQEEFF 242

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++      ++++A   P         L SRL +  V  +     +    ++     
Sbjct: 243 HTFNALVDQGRQIVISADKSPSDLEGMEDRLRSRLNSGLVADLHATTYELRLGILQSKAE 302

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                + +K+  ++  ++  ++   E  ++++   +   G  IT     +VL +  + 
Sbjct: 303 QMGAVVPQKVMEFLAHKITSNVRELEGALNRVIAHSQLVGRSITLESTQDVLHDLLKA 360


>gi|254435499|ref|ZP_05049006.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           oceani AFC27]
 gi|207088610|gb|EDZ65882.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           oceani AFC27]
          Length = 452

 Score = 98.3 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 78/231 (33%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----------- 83
            + D  +   +      A   +   P      + + G  G GK+ L +            
Sbjct: 121 YTFDSFVEGKSNQLPRAASHQVAENPGSAYNPLFIYGGVGLGKTHLMHAVGNYIRSRNPS 180

Query: 84  ------WSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIIN 131
                  S++  +     +  +  +      + V   L++DI      +    + F+  N
Sbjct: 181 ARVVYLHSEQFVAEMIKALQLNAINEFKTRYRSVDILLIDDIQFFAGKERSQEEFFYTFN 240

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++ +    +++T   FP         L SR      V +  P+ +    +++   +   I
Sbjct: 241 TLLEVQHQIILTCDRFPKEVNGLEERLTSRFGWGLTVAVEPPELETRVAILMNKASIENI 300

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +   +A ++ + +  ++   E  + ++   +      IT  L  E LK+ 
Sbjct: 301 ILSDDVAFFLGRLIYSNIRELEGALRRVIAYSRFTHRPITMELTREALKDL 351


>gi|81251045|gb|ABB69855.1| DNA replication initiator protein [Nitrosospira sp. 9SS1]
          Length = 476

 Score = 98.3 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85
               + +  +   A + A      +   P        + G  G GK+ L           
Sbjct: 142 NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIYGGVGLGKTHLIQAIGNFVVEH 201

Query: 86  DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
           + +   R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 202 NPAAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFY 261

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T  ++P         L SR      V +  P+ +    +++K    
Sbjct: 262 AFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 321

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I +D+ +A +I + +  ++   E  + ++   +   G  +T  LA E LK+ 
Sbjct: 322 EDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGHALTLDLAREALKDL 375


>gi|117927212|ref|YP_871763.1| chromosomal replication initiator protein DnaA [Acidothermus
           cellulolyticus 11B]
 gi|117647675|gb|ABK51777.1| chromosomal replication initiator protein DnaA [Acidothermus
           cellulolyticus 11B]
          Length = 480

 Score = 98.3 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS--DKSR 89
               + +  ++ ++   A     +    P++    + + G SG GK+ L +       S 
Sbjct: 142 NPKYTFETFVIGASNRFAHAAAFAAAESPAKAYNPLFIYGDSGLGKTHLLHAIGHYALSL 201

Query: 90  STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
                    S +    D    +                  L++DI  L+  +    + FH
Sbjct: 202 FGNIRVRYVSSEEFTNDFINSIRDGKAEGFRRRYRDVDVLLVDDIQFLENKEQTQEEFFH 261

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K  A
Sbjct: 262 TFNTLHNANKQIVISSDRAPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAA 320

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              + I  ++  YI  ++  ++   E  + ++   A      +  +LA  VLK+ 
Sbjct: 321 QEGLDIPNEVLEYIASKISSNIRELEGALIRISAFANLNRQRVDLALAEVVLKDL 375


>gi|312137515|ref|YP_004004851.1| chromosome replication initiator protein dnaa [Rhodococcus equi
           103S]
 gi|311886854|emb|CBH46162.1| chromosome replication initiator protein DnaA [Rhodococcus equi
           103S]
          Length = 524

 Score = 98.3 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 85/236 (36%), Gaps = 28/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   A     +    P+R    + + G SG GK+ L +  +      
Sbjct: 186 NAKYTFDTFVIGASNRFAHAAAVAIAEAPARAYNPLFIWGASGLGKTHLLHA-AGHYAQR 244

Query: 92  RFSNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127
            F  +     S +    D    +                  L++DI  ++  +    + F
Sbjct: 245 LFPGLRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDDIQFIEGKEGIQEEFF 304

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H  +  +++++   P         L +R +   +  +  P+ +    ++ K   
Sbjct: 305 HTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSKKAR 364

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             ++ +   +   I  R+ER++   E  + ++   A      +   LA  VL++  
Sbjct: 365 MDRLDVPHDVLELIASRIERNIRELEGALIRVTAFASLNRQALDLKLAEVVLRDLM 420


>gi|149202937|ref|ZP_01879908.1| chromosomal replication initiation protein [Roseovarius sp. TM1035]
 gi|149143483|gb|EDM31519.1| chromosomal replication initiation protein [Roseovarius sp. TM1035]
          Length = 448

 Score = 98.3 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDS-WPSWP--SRVVILVGPSGSGKSCLANIWSDKSR 89
           P     + D  +V    E A           P     + L G  G GK+ L +  + + +
Sbjct: 107 PLDERFTFDSFVVGKPNELAHAAARRVAECGPVTFNPLFLYGGVGLGKTHLMHAIAWELK 166

Query: 90  STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126
            TR       L +                     +  +   ++++D+  +   D    + 
Sbjct: 167 ITRPDLNVVYLSAEQFMYRFVQALRDRKMMDFKSVFRSVDVLMVDDVQFIAGKDSTQEEF 226

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++    
Sbjct: 227 FHTFNALVDQNKQIVISADRAPGEIANLEERIKSRLQCGLVVDLHPTDYELRLGILQSKV 286

Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              +     + +   +  ++  R+  ++   E  + ++   A      IT  L  + L +
Sbjct: 287 DRYRAQYPDLALSDGVLEFLAHRISTNVRVLEGAMTRLFAFASLVRKPITLELTQDCLAD 346

Query: 242 TQQC 245
             + 
Sbjct: 347 VLRA 350


>gi|171462833|ref|YP_001796946.1| chromosomal replication initiator protein DnaA [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192371|gb|ACB43332.1| chromosomal replication initiator protein DnaA [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 474

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS-----D 86
              ++ +  +   A + A      +   P      + L G  G GK+ L +        +
Sbjct: 140 NPNLTFETFVTGKANQLARAASIQVAHNPGTSYNPMFLYGGVGLGKTHLIHAIGNHLLKE 199

Query: 87  KSRST-RFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
           K  +  R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 200 KPNARIRYIHAEQYVSDVVRAYQQKAFDRFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 259

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    S +++T  T+P         L SR  +   V I  P+ +    +++K    
Sbjct: 260 AFEALLSNKSQVIITGDTYPKEMAGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAIG 319

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I + + +A ++ + +  ++   E  + K+       G  +T  +A   LK+ 
Sbjct: 320 EGIPMSEDVAFFVAKHLRSNVRELEGALRKILAFVRFHGREVTIEVARTALKDL 373


>gi|170076637|ref|YP_001733275.1| chromosomal replication initiation protein [Synechococcus sp. PCC
           7002]
 gi|226735857|sp|B1XKQ0|DNAA_SYNP2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|169884306|gb|ACA98019.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           PCC 7002]
          Length = 449

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 38/272 (13%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61
           N +    SF+     ++ +P  K  +L          +    +V      A     +   
Sbjct: 85  NTLAATQSFYSSRSGQSTRPGKKTPEL------NSKYTFSRFVVGPTNRMAHAAALAVAE 138

Query: 62  WPSR---VVILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILI-------- 105
            P R    ++L G  G GK+ L           +  +  F    +   + LI        
Sbjct: 139 SPGRDFNPLVLCGGVGLGKTHLMQAIGHYRLDTQPDAKIFYVSTEQFTNDLIVAIRKDSL 198

Query: 106 -------DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                   T   +L++DI  ++  +    + F+  N++H+    +++ +   P       
Sbjct: 199 QTFREHYRTADILLVDDIQFIEGKEYTQEEFFYTFNTLHEAGKQIVLASDRPPHQIPGLQ 258

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFA 212
             L SR     +  I  PD +    ++ K      + + + +  YI        R L  A
Sbjct: 259 QRLSSRFSMGLIADIQPPDLETRMAILQKKAEAENLNLSRSVIEYIATHYTANIRELEGA 318

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             L+  + ++A+S G+ +T    A +L  T +
Sbjct: 319 --LLRAVTHIAIS-GLPMTVENLAPILNPTVE 347


>gi|312149106|gb|ADQ29177.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi N40]
          Length = 486

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++    + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 146 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 205

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    ++ K   +  
Sbjct: 266 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 325

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 326 INVPKNILNLVAQKVTTNVRDLEAAVTKL 354


>gi|312148000|gb|ADQ30659.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi JD1]
          Length = 486

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++    + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 146 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 205

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    ++ K   +  
Sbjct: 266 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 325

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 326 INVPKNILNLVAQKVTTNVRDLEAAVTKL 354


>gi|223888775|ref|ZP_03623366.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 64b]
 gi|223885591|gb|EEF56690.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 64b]
          Length = 486

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++    + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 146 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 205

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    ++ K   +  
Sbjct: 266 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 325

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 326 INVPKNILNLVAQKVTTNVRDLEAAVTKL 354


>gi|218249778|ref|YP_002374948.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi ZS7]
 gi|226321746|ref|ZP_03797272.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi Bol26]
 gi|226735780|sp|B7J203|DNAA_BORBZ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|218164966|gb|ACK75027.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi ZS7]
 gi|226232935|gb|EEH31688.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi Bol26]
          Length = 487

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++    + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 147 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 206

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 207 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 266

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    ++ K   +  
Sbjct: 267 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 326

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 327 INVPKNILNLVAQKVTTNVRDLEAAVTKL 355


>gi|15594782|ref|NP_212571.1| chromosomal replication initiator protein (dnaA) [Borrelia
           burgdorferi B31]
 gi|216264677|ref|ZP_03436669.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 156a]
 gi|224532482|ref|ZP_03673107.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi WI91-23]
 gi|226321067|ref|ZP_03796609.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 29805]
 gi|461940|sp|P33768|DNAA_BORBU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|454039|gb|AAA58941.1| DnaA protein [Borrelia burgdorferi]
 gi|2688358|gb|AAB91515.1| chromosomal replication initiator protein (dnaA) [Borrelia
           burgdorferi B31]
 gi|215981150|gb|EEC21957.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 156a]
 gi|224512554|gb|EEF82930.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi WI91-23]
 gi|226233477|gb|EEH32216.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 29805]
          Length = 486

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++    + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 146 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 205

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    ++ K   +  
Sbjct: 266 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 325

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 326 INVPKNILNLVAQKVTTNVRDLEAAVTKL 354


>gi|77163562|ref|YP_342087.1| chromosomal replication initiator protein, DnaA [Nitrosococcus
           oceani ATCC 19707]
 gi|123757965|sp|Q3JF39|DNAA_NITOC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|76881876|gb|ABA56557.1| chromosomal replication initiator protein, DnaA [Nitrosococcus
           oceani ATCC 19707]
          Length = 449

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 78/231 (33%), Gaps = 26/231 (11%)

Query: 38  ISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----------- 83
            + D  +   +      A   +   P      + + G  G GK+ L +            
Sbjct: 118 YTFDSFVEGKSNQLPRAASHQVAENPGSAYNPLFIYGGVGLGKTHLMHAVGNYIRSRNPS 177

Query: 84  ------WSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIIN 131
                  S++  +     +  +  +      + V   L++DI      +    + F+  N
Sbjct: 178 ARVVYLHSEQFVAEMIKALQLNAINEFKTRYRSVDILLIDDIQFFAGKERSQEEFFYTFN 237

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++ +    +++T   FP         L SR      V +  P+ +    +++   +   I
Sbjct: 238 TLLEVQHQIILTCDRFPKEVNGLEERLTSRFGWGLTVAVEPPELETRVAILMNKASIENI 297

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +   +A ++ + +  ++   E  + ++   +      IT  L  E LK+ 
Sbjct: 298 ILSDDVAFFLGRLIYSNIRELEGALRRVIAYSRFTHRPITMELTREALKDL 348


>gi|149919113|ref|ZP_01907597.1| chromosomal replication initiator protein dnaA [Plesiocystis
           pacifica SIR-1]
 gi|149820043|gb|EDM79464.1| chromosomal replication initiator protein dnaA [Plesiocystis
           pacifica SIR-1]
          Length = 453

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 82/235 (34%), Gaps = 27/235 (11%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN---------- 82
                D  +  ++ E A     +    P      + + G  G GK+ L +          
Sbjct: 120 PRYRFDSFIKGASNELAASAAMAASDAPGTRFNPLFIYGGVGLGKTHLLHGIGHELHRKD 179

Query: 83  -----------IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFH 128
                       + ++  +   +N      +        +L++DI  +   D    + FH
Sbjct: 180 PSLRIVYLSAEHFMNEFVTAVRNNQFDEFRARYRKDCDCLLIDDIQFIAGRDRTMDEFFH 239

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + N++++    +++T+   P         L SRL    V  +  PD +    ++      
Sbjct: 240 VFNALYEAGKQIVVTSDRVPADMPGMEARLTSRLNWGLVADVQPPDLETRIAIVQAKAER 299

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
             + +  ++   I + +  ++   E  + ++   A  RG+ I ++    VL + +
Sbjct: 300 DGMELPAEVCLTIAELVRSNVRELEGALLRVTAFAQLRGVAIDKAFVESVLGKRR 354


>gi|24114988|ref|NP_709498.1| replication initiation protein DnaA [Shigella flexneri 2a str. 301]
 gi|24054240|gb|AAN45205.1| replication initiation protein DnaA [Shigella flexneri 2a str. 301]
          Length = 408

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 84/240 (35%), Gaps = 37/240 (15%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85
             +  + D+ +   + + A          P      + L G +G GK+ L +     I +
Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAACQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQYDS 138
            K  +      ++     ++   +   +E+       +D L  +D Q F I N + +   
Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAIKNDLRKS-- 226

Query: 139 SLLMTARTFPVSWGVCLPD----------------LCSRLKAATVVKISLPDDDFLEKVI 182
                +  F   W V                    L SR      V I  P+ +    ++
Sbjct: 227 ----FSTPFTPCWKVSTDHSHLGSLFERDNGVEDRLKSRFGWGLTVAIEPPELETRVAIL 282

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 283 MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 342


>gi|327490338|gb|EGF22125.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK1058]
          Length = 450

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 93/274 (33%), Gaps = 34/274 (12%)

Query: 3   LMKEDYSFFVPDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAI----EQAVRL 55
           + +E+ +   P K     P+    QL             + D+ +           A+ +
Sbjct: 79  IFEEETNIDTP-KSAVTSPQISTVQLSLPPIDTGLKSKYTFDNFVQGDGNIWAKAAALAV 137

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI------------ 103
            ++  +     + + G  G GK+ L N   ++          K + +             
Sbjct: 138 SENLAT-TYNPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRL 196

Query: 104 --------LIDTRKPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
                   +  +   +L++DI  L         + F+  N++H  +  +++T+   P   
Sbjct: 197 GEMDSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHL 256

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L +R K      I+ PD +    ++     +           Y+  + + ++  
Sbjct: 257 DNLEERLVTRFKWGLTQNITPPDFETRIAILRNKIENLDYIFPNDTLEYLAGQFDSNVRD 316

Query: 212 AEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
            E  ++ +  +A  R    IT  +AAE ++  +Q
Sbjct: 317 LEGALNDISLIARVRHLKEITIDIAAEAIRARKQ 350


>gi|327467738|gb|EGF13232.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK330]
          Length = 450

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 93/274 (33%), Gaps = 34/274 (12%)

Query: 3   LMKEDYSFFVPDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAI----EQAVRL 55
           + +E+ +   P K     P+    QL             + D+ +           A+ +
Sbjct: 79  IFEEETNIDTP-KSAVTSPQISTVQLSLPPIDTGLKSKYTFDNFVQGDGNIWAKAAALAV 137

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI------------ 103
            ++  +     + + G  G GK+ L N   ++          K + +             
Sbjct: 138 SENLAT-TYNPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRL 196

Query: 104 --------LIDTRKPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
                   +  +   +L++DI  L         + F+  N++H  +  +++T+   P   
Sbjct: 197 GEMDSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHL 256

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L +R K      I+ PD +    ++     +           Y+  + + ++  
Sbjct: 257 DNLEERLVTRFKWGLTQNITPPDFETRIAILRNKIENLDYIFPNDTLEYLAGQFDSNVRD 316

Query: 212 AEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
            E  ++ +  +A  R    IT  +AAE ++  +Q
Sbjct: 317 LEGALNDISLIARVRHLKEITIDIAAEAIRARKQ 350


>gi|283457090|ref|YP_003361653.1| DNA replication initiation ATPase [Rothia mucilaginosa DY-18]
 gi|283133068|dbj|BAI63833.1| ATPase involved in DNA replication initiation [Rothia mucilaginosa
           DY-18]
          Length = 564

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 82/236 (34%), Gaps = 28/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-- 89
               + D  ++  +   A      +   P      + + G SG GK+ L +     ++  
Sbjct: 221 NPNYTFDTFVIGQSNRFAHASAFAVAEQPGIVYNPLFIYGGSGLGKTHLLHAIGHYTKYL 280

Query: 90  ----STRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFH 128
                 R+ N  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 281 YPNLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDVLLIDDIQFLAGKEATMEEFFH 340

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++ +   +++T+   P         + SR  +   V +  P+ +    ++ K   +
Sbjct: 341 TFNALYNHQKQIVITSDLPPKQLTGFAERMRSRFGSGLNVDVQPPELETRIAILRKKAQN 400

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG--MGITRSLAAEVLKET 242
             + +   +  YI   +  ++   E  + +    A  +     IT + A   LK+ 
Sbjct: 401 EILPVRDDVMEYIASHVTANIRELEGALIRASAAASMKKPPEPITLAEAETYLKDL 456


>gi|85705685|ref|ZP_01036782.1| chromosomal replication initiation protein [Roseovarius sp. 217]
 gi|85669675|gb|EAQ24539.1| chromosomal replication initiation protein [Roseovarius sp. 217]
          Length = 450

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 82/245 (33%), Gaps = 33/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDS-WPSWP--SRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A           P     + L G  G GK+ L +   W  K
Sbjct: 109 PLDERFTFDSFVVGKPNELAHAAARRVAECGPVTFNPLFLYGGVGLGKTHLMHAIAWELK 168

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
           +     + +  S +                    +  +   ++++D+  +   D    + 
Sbjct: 169 TTRPDLNVVYLSAEQFMYRFVQALRDRKMMDFKSVFRSVDVLMVDDVQFIAGKDSTQEEF 228

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++    
Sbjct: 229 FHTFNALVDQNKQIVISADRAPGEIANLEERIKSRLQCGLVVDLHPTDYELRLGILQSK- 287

Query: 187 ADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            DR       + +   +  ++  R+  ++   E  + ++   A      IT  L  + L 
Sbjct: 288 VDRFRAQYPDLTLHDGVLEFLAHRITTNVRVLEGAMTRLFAFASLVRKPITLELTQDCLA 347

Query: 241 ETQQC 245
           +  + 
Sbjct: 348 DVLRA 352


>gi|229818503|ref|YP_002880029.1| chromosomal replication initiator protein DnaA [Beutenbergia
           cavernae DSM 12333]
 gi|229564416|gb|ACQ78267.1| chromosomal replication initiator protein DnaA [Beutenbergia
           cavernae DSM 12333]
          Length = 489

 Score = 98.3 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR-- 89
               + D  ++ S+   A     +           + + G SG GK+ L +     ++  
Sbjct: 150 NATYTFDTFVIGSSNRFAHAAATAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAQRL 209

Query: 90  ----STRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFH 128
               + R+ N  +  +  +                + + +L++DI  L   +    + FH
Sbjct: 210 YPGIAVRYVNSEEFTNDFINSIRDDKAEAFQRRYRSVEVLLVDDIQFLQGKEQTMEEFFH 269

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++T+   P         + SR +   +  I  PD +    ++ K    
Sbjct: 270 TFNTLHNANKQVVITSDVAPKYLEGFADRMRSRFEWGLITDIQPPDLETRIAILRKKAGS 329

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++     +  YI  R+  ++   E  + ++   A      +  +LA  VLK+ 
Sbjct: 330 ERLSAPDDVLEYIASRISTNIRELEGALIRVTAFANLNEQQVDLALAEMVLKDL 383


>gi|269217836|ref|ZP_06161690.1| bacterial DnaA protein helix-turn-helix protein [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269212771|gb|EEZ79111.1| bacterial DnaA protein helix-turn-helix protein [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 591

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 79/234 (33%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
               + D+ ++      A      +   P      + L   SG GK+ L +   +     
Sbjct: 249 NPRYTFDNFVIGDNNRFATATSLAVAESPGTTYNPLFLYSDSGMGKTHLMHAIGNYALNL 308

Query: 87  ----KSRSTRFSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFH 128
               K R         +  + + D  +            +L++DI  +   D    + FH
Sbjct: 309 FPSIKVRYVSAEEFTNAFINSVRDGHQAEFKNQFRTVDILLIDDIQFIGGRDSTVEEFFH 368

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++   +  +++T+   P         + SR  +     I  P+ +    ++ K    
Sbjct: 369 TFNALTNSNKQIVITSDVSPNLLNGFEERMLSRFNSGVTANIDRPNLETRIAILEKKAHS 428

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + +++  YI   M  ++   E  + ++   A      I+  LA  +LK+ 
Sbjct: 429 DGFTVPREVNEYIATHMLTNVREMEGALRRVTAFADLSKQTISLGLAEMILKDL 482


>gi|224534658|ref|ZP_03675230.1| chromosomal replication initiator protein DnaA [Borrelia spielmanii
           A14S]
 gi|224513906|gb|EEF84228.1| chromosomal replication initiator protein DnaA [Borrelia spielmanii
           A14S]
          Length = 484

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++    + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 144 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 203

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 204 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 263

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    +I K   +  
Sbjct: 264 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 323

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 324 IKVPKNILNLVAQKVTTNVRDLEAAVTKL 352


>gi|310825634|ref|YP_003957991.1| chromosomal replication initiator protein [Eubacterium limosum
           KIST612]
 gi|308737368|gb|ADO35028.1| chromosomal replication initiator protein [Eubacterium limosum
           KIST612]
          Length = 449

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 79/233 (33%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW------- 84
               + +  ++      A     +    PS     + + G  G GK+ L           
Sbjct: 113 NPKYTFEKFVIGENNRFAHAACVAVSEAPSERYNPLFIYGGVGLGKTHLMQAIGNYILSY 172

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                      +K  +     I    +    +  + V   L++DI  L   D    + FH
Sbjct: 173 APTKKVVYVSCEKFTNEFIDAIQNQNNIDFRNKYRNVDILLIDDIQFLAGKDGTQEEFFH 232

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+ +  +++++   P         L SR +   +  IS P+ +    ++ K    
Sbjct: 233 TFNALHEENKQIVISSDRPPKEIPKLEERLRSRFEMGLITDISAPNFETRIAILRKKAES 292

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +  I   + ++I   +  ++   E  +  +   +   G  I    A + LK+
Sbjct: 293 YKEEIPNDVLSFIADSIHSNIRELEGALTTVVAYSKLHGEPICLETAKDALKD 345


>gi|167629172|ref|YP_001679671.1| chromosomal replication initiator protein dnaa [Heliobacterium
           modesticaldum Ice1]
 gi|226735814|sp|B0TAK8|DNAA_HELMI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|167591912|gb|ABZ83660.1| chromosomal replication initiator protein dnaa [Heliobacterium
           modesticaldum Ice1]
          Length = 443

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 93/264 (35%), Gaps = 35/264 (13%)

Query: 10  FFVP--DKQKNDQPKNK----EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW- 62
           FF P  D ++++  +      E             + D  +V ++   A     +     
Sbjct: 79  FFTPSADSRRSEPSRRPVATEESSPPL---LNPKYTFDTFVVGNSNRFAHAAALAVAEAP 135

Query: 63  --PSRVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------- 105
                 + + G  G GK+ L             +SR    S+   + + I          
Sbjct: 136 AKAYNPLFVYGGVGLGKTHLMQAIGHFVIEQHPQSRVVYVSSEKFTNELINAIRDDKTVE 195

Query: 106 -----DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     +L++DI  L   +    + FH  N++H+    +++++   P         
Sbjct: 196 FRNRYRNIDVLLIDDIQFLAGKERTQEEFFHTFNALHESSKQIIISSDRPPKEIPTLEDR 255

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR +   +  I+ PD +    ++ K      + +  ++  +I   ++ ++   E  ++
Sbjct: 256 LRSRFEWGLITDINPPDLETRIAILRKKAILENLDVPNEVMVFIANIIQSNIRELEGALN 315

Query: 218 KMDNLALSRGMGITRSLAAEVLKE 241
           ++   A   G  +T  +A E LK 
Sbjct: 316 RVIAYANLSGKSLTSEVAEEALKN 339


>gi|227514119|ref|ZP_03944168.1| DNA-directed DNA replication initiator protein [Lactobacillus
           fermentum ATCC 14931]
 gi|260662538|ref|ZP_05863433.1| chromosomal replication initiator protein DnaA [Lactobacillus
           fermentum 28-3-CHN]
 gi|227087490|gb|EEI22802.1| DNA-directed DNA replication initiator protein [Lactobacillus
           fermentum ATCC 14931]
 gi|260553229|gb|EEX26172.1| chromosomal replication initiator protein DnaA [Lactobacillus
           fermentum 28-3-CHN]
          Length = 438

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 87/271 (32%), Gaps = 38/271 (14%)

Query: 4   MKEDYSFFV-PDKQKNDQPKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60
           ++ DY     P       P+    Q  F    P     +    +   +   A     +  
Sbjct: 73  IRPDYVLATDPTPLAQTPPRP---QSTFKEETPLNPEYTFQTFIEGRSNMMAYASAFAAS 129

Query: 61  SWPS---RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID----------- 106
             P      +++ G  G GK+ L    +    + +F N +  +  +  +           
Sbjct: 130 ESPGDQYNPLLIYGGVGLGKTHLMQAIA---NNMKFHNPSVRIKYVTSENFMNDFVNSIK 186

Query: 107 ------------TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
                           +L++DI          T+ F+  N ++     +++T+   P   
Sbjct: 187 SGTQEEFRREYRDLDALLVDDIQFFASKGETQTEFFNTFNVLYDNKKQIVLTSDKDPREI 246

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L SR      V+I+ P  +    ++     +  + +   +  ++ QR+  ++  
Sbjct: 247 PNLTARLVSRFMWGVPVEITSPALETRIAILKSKAEEEHLDVPNDVLNFVAQRINTNVRE 306

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            E  + ++   +      IT  LA E L+  
Sbjct: 307 LEGALMRIRVFSELHQQPITLKLATEALQGM 337


>gi|166365030|ref|YP_001657303.1| chromosomal replication initiation protein [Microcystis aeruginosa
           NIES-843]
 gi|189044599|sp|B0JGA6|DNAA_MICAN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166087403|dbj|BAG02111.1| chromosomal replication initiator protein [Microcystis aeruginosa
           NIES-843]
          Length = 444

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 77/233 (33%), Gaps = 28/233 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               +    +V      A     +    P R    + L G  G GK+ L           
Sbjct: 107 NPKYNFSRFVVGPTNRMAHAAALAVAELPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEL 166

Query: 87  --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDFND---TQLFH 128
             +SR    S    + D I    +               +L++D+  ++  +    + FH
Sbjct: 167 YPQSRVFYVSTEQFTNDLITAIRQDSMESFRNHYRHADILLVDDLQFIEGKEYTQEEFFH 226

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H+    +++ +   P      L D L SR     V  I  PD +    ++ K   
Sbjct: 227 TFNTLHEAGKQVVLASDRLPKQIP-SLQDRLISRFSMGLVADIQAPDIETRMAILQKKAE 285

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +++  YI      ++   E  + +        G+ +T    A VL 
Sbjct: 286 YENLRLPREVIEYIAVNYTSNIRELEGALIRATTYISISGLPMTVENIAPVLN 338


>gi|330835984|ref|YP_004410625.1| chromosomal replication initiator protein DnaA [Spirochaeta
           coccoides DSM 17374]
 gi|329747887|gb|AEC01243.1| chromosomal replication initiator protein DnaA [Spirochaeta
           coccoides DSM 17374]
          Length = 470

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 26/232 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN--------- 82
                 ++ +       A      I   P       ++ G  G GK+ L           
Sbjct: 130 NPLYRFENFIAGENSAFAYSAAMAISKNPGVTYNPCLVYGGVGLGKTHLLQSIGNYILEN 189

Query: 83  --------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFND---TQLFH 128
                   + ++   +    +I         +       +L++DI  L   D    +LFH
Sbjct: 190 NPELKVVYVTAEMFTNEFIQSIGDKKTQAFKNKYRKVGVLLIDDIHFLQGKDSTQEELFH 249

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N ++     L+ T              L SR +    V +  P+ +    ++ +  A+
Sbjct: 250 TFNDLYDTHKQLVFTCDRPISELKDLTSRLRSRFERGLNVDLLPPNYETRMAILKRKSAE 309

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + + I   +  +I + +  ++   E  + K+   +      IT  +A E LK
Sbjct: 310 KNMSIPDDVLDFISRNVNTNVRDLEASLTKLIAYSTLLNKEITLDIAKEQLK 361


>gi|260887485|ref|ZP_05898748.1| ATPase [Selenomonas sputigena ATCC 35185]
 gi|330837867|ref|YP_004412447.1| chromosomal replication initiator protein DnaA [Selenomonas
           sputigena ATCC 35185]
 gi|260862772|gb|EEX77272.1| ATPase [Selenomonas sputigena ATCC 35185]
 gi|329745631|gb|AEB98987.1| chromosomal replication initiator protein DnaA [Selenomonas
           sputigena ATCC 35185]
          Length = 488

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 81/233 (34%), Gaps = 26/233 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87
               + D  +  ++   A     +    P RV     + G  G GK+ L +    K    
Sbjct: 152 NSHYTFDTFVTGNSNRFAHAAALAVAESPGRVYNPFFMYGGVGLGKTHLMHAIGHKILEK 211

Query: 88  ---------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLFH 128
                    S     + +  S+     ++          +L++DI  L   +    + FH
Sbjct: 212 FPQMRVLYISSEKFTNELINSIRDGNPESFRQKYRNIDVLLVDDIQFLSKKEHTQEEFFH 271

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L SR +   +  I  PD +    ++ K  A 
Sbjct: 272 TFNTLHDANKHIILSSDRHPREIQTLEDRLRSRFEWGLITDIQAPDLETRIAILRKKAAL 331

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
             + +   +   I  R++ ++   E  + ++   A      +T SL  E L  
Sbjct: 332 EHLDVPNDVMFSIANRIDNNIRELEGALTRVVAYASLTKQPVTTSLVNEALAN 384


>gi|261414415|ref|YP_003248098.1| chromosomal replication initiator protein DnaA [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261370871|gb|ACX73616.1| chromosomal replication initiator protein DnaA [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302326676|gb|ADL25877.1| chromosomal replication initiator protein DnaA [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 441

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 28/215 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANI----- 83
           P       ++ +     + A     +    P       + + G SG GK+ L        
Sbjct: 102 PLSGSFRFENFVPGDKAQLAFNAALAVARNPDGTQYNPLFIYGSSGLGKTHLLQSIGNYI 161

Query: 84  ----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDT 124
                           +S +            +     +    +L++DI           
Sbjct: 162 LEEDPTKRVIYLTSEDFSQQYMKCLQEKRITEMSDFYRNEVDILLIDDIQNWTGKYETQN 221

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + F I N++HQ    +++T+             L SR      V I  PD +  E ++ K
Sbjct: 222 EFFLIFNALHQAGKQIVLTSDAPAAEVKNLSDRLVSRFSWGLTVDIQPPDVETREAILHK 281

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
              +R + I  ++  Y+ + +  ++   E  + K+
Sbjct: 282 KAEERHLEISDEVIRYLAENIASNVRCLESAIIKL 316


>gi|262281562|ref|ZP_06059341.1| chromosomal replication initiator protein DnaA [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257021|gb|EEY75760.1| chromosomal replication initiator protein DnaA [Acinetobacter
           calcoaceticus RUH2202]
          Length = 468

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 97/268 (36%), Gaps = 38/268 (14%)

Query: 5   KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------- 57
           KE  S   P       PK  +++L          +    +   + + A            
Sbjct: 108 KEPESVSSPHTNTVVNPKTAKKKLL-----NPQFTFSLFVEGRSNQMAAETCRKVLTQLG 162

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---- 108
           +    P   + L GP+G GK+ L           K  +      ++S     + +     
Sbjct: 163 ASQHNP---LFLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGK 219

Query: 109 -----------KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI LL   +  L   F+  N++      +++T+  +P      
Sbjct: 220 VEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTEL 279

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L SR      V +  PD +   ++++K   +  + + +  A +I Q++  ++   E 
Sbjct: 280 DPRLVSRFSWGLSVGVEPPDIETRIEILLKKAENSGVDLPRNCALFIAQQVVANVRELEG 339

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++K+  ++  +G  I   +  E LK+ 
Sbjct: 340 ALNKVVAISRFKGAPIDLDVVRESLKDV 367


>gi|255326481|ref|ZP_05367563.1| chromosomal replication initiator protein DnaA [Rothia mucilaginosa
           ATCC 25296]
 gi|255296521|gb|EET75856.1| chromosomal replication initiator protein DnaA [Rothia mucilaginosa
           ATCC 25296]
          Length = 565

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 82/236 (34%), Gaps = 28/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-- 89
               + D  ++  +   A      +   P      + + G SG GK+ L +     ++  
Sbjct: 222 NPNYTFDTFVIGQSNRFAHASAFAVAEQPGIVYNPLFIYGGSGLGKTHLLHAIGHYTKYL 281

Query: 90  ----STRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFH 128
                 R+ N  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 282 YPNLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDVLLIDDIQFLAGKEATMEEFFH 341

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++ +   +++T+   P         + SR  +   V +  P+ +    ++ K   +
Sbjct: 342 TFNALYNHQKQIVITSDLPPKQLTGFAERMRSRFGSGLNVDVQPPELETRIAILRKKAQN 401

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG--MGITRSLAAEVLKET 242
             + +   +  YI   +  ++   E  + +    A  +     IT + A   LK+ 
Sbjct: 402 EILPVRDDVMEYIASHVTANIRELEGALIRASAAASMKKPPEPITLAEAETYLKDL 457


>gi|256823906|ref|YP_003147866.1| chromosomal replication initiator protein DnaA [Kytococcus
           sedentarius DSM 20547]
 gi|256687299|gb|ACV05101.1| chromosomal replication initiator protein DnaA [Kytococcus
           sedentarius DSM 20547]
          Length = 506

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 86/233 (36%), Gaps = 26/233 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS--- 90
             + D  ++ S+   A     +    P+R    + + G SG GK+ L +     +R+   
Sbjct: 167 KYTFDTFVLGSSNRFAHAAATAVAEAPARAYNPLFIYGGSGLGKTHLLHAIGHYARTLDS 226

Query: 91  --------------TRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHII 130
                            + ++    +      + V   L++DI  L   +    + FH  
Sbjct: 227 SVRVKYVNSEEFTNQFINAVSAGQANAFQRQYRDVDVLLIDDIQFLQGKEQTMEEFFHTF 286

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++H  +  +++T+   P         + SR +   +  +  PD +    ++ +  A  +
Sbjct: 287 NTLHNSEKQIVITSDQPPKKLSGFAERMRSRFEWGLLTDVQPPDLETRIAILRRKAAADK 346

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           + I   +   I  ++  ++   E  + ++   A   G  +   LA  VLK+  
Sbjct: 347 LDIPDDVLHLIASKISSNIRELEGALTRVTAFASLSGSPLDEYLARTVLKDVM 399


>gi|163838770|ref|YP_001623175.1| chromosomal replication initiator protein [Renibacterium
           salmoninarum ATCC 33209]
 gi|162952246|gb|ABY21761.1| chromosomal replication initiator protein [Renibacterium
           salmoninarum ATCC 33209]
          Length = 467

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 90/258 (34%), Gaps = 28/258 (10%)

Query: 13  PDK-QKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVV 67
           PD+  +  +P+         F R       D  ++  +      A   +   P+     +
Sbjct: 103 PDEPSEESRPQPGPPSTSNEFGRLNPKYLFDTFVIGQSNRFAHAAAVAVAEAPAKAYNPL 162

Query: 68  ILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTR------------- 108
            + G SG GK+ L +     +R        R+ N  +  +  +   R             
Sbjct: 163 FIYGDSGLGKTHLLHAIGHYARRLYNGIRVRYVNSEEFTNEFINSIRYDEGTSFKTTYRN 222

Query: 109 -KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI  L   +    + FH  N++H ++  +++T+   P         + SR + 
Sbjct: 223 VDILLIDDIQFLSGKEATQEEFFHTFNALHNHNKQVVITSDLPPKQLSGFEERMRSRFEW 282

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             +  +  P+ +    ++ K      +     +  YI  ++  ++   E  + ++   A 
Sbjct: 283 GLLTDVQPPELETRIAILRKKAIGEGLHAPDDVLEYIASKISTNIRELEGALIRVTAFAS 342

Query: 225 SRGMGITRSLAAEVLKET 242
                +   L   VLK+ 
Sbjct: 343 LNRQSVDVGLTETVLKDL 360


>gi|184154477|ref|YP_001842817.1| chromosomal replication initiation protein DnaA [Lactobacillus
           fermentum IFO 3956]
 gi|226735821|sp|B2GEU8|DNAA_LACF3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|183225821|dbj|BAG26337.1| chromosomal replication initiation protein DnaA [Lactobacillus
           fermentum IFO 3956]
 gi|299782686|gb|ADJ40684.1| Chromosomal replication initiator protein dnaA [Lactobacillus
           fermentum CECT 5716]
          Length = 438

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 87/271 (32%), Gaps = 38/271 (14%)

Query: 4   MKEDYSFFV-PDKQKNDQPKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60
           ++ DY     P       P+    Q  F    P     +    +   +   A     +  
Sbjct: 73  IRPDYVLATDPTPLAQTPPRP---QSTFKEETPLNPEYTFQTFIEGRSNMMAYASAFAAS 129

Query: 61  SWPS---RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID----------- 106
             P      +++ G  G GK+ L    +    + +F N +  +  +  +           
Sbjct: 130 ESPGDQYNPLLIYGGVGLGKTHLMQAIA---NNMKFHNPSVRIKYVTSENFMNDFVNSIK 186

Query: 107 ------------TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
                           +L++DI          T+ F+  N ++     +++T+   P   
Sbjct: 187 SGTQEEFRREYRDLDALLVDDIQFFASKGETQTEFFNTFNVLYDNKKQIVLTSDKDPREI 246

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                 L SR      V+I+ P  +    ++     +  + +   +  ++ QR+  ++  
Sbjct: 247 PNLTERLVSRFMWGVPVEITSPALETRIAILKSKAEEEHLDVPNDVLNFVAQRINTNVRE 306

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            E  + ++   +      IT  LA E L+  
Sbjct: 307 LEGALMRIRVFSELHQQPITLKLATEALQGM 337


>gi|332363606|gb|EGJ41387.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK1059]
          Length = 450

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 86/258 (33%), Gaps = 33/258 (12%)

Query: 19  DQPKNKEEQLFF---SFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVG 71
             P+    QL             + D+ +           A+ + ++  +     + + G
Sbjct: 94  TSPQISTVQLSLPPIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYG 152

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPV 111
             G GK+ L N   ++          K + +                     +  +   +
Sbjct: 153 GPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLL 212

Query: 112 LLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           L++DI  L         + F+  N++H  +  +++T+   P         L +R K    
Sbjct: 213 LIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLT 272

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I+ PD +    ++     +           Y+  + + ++   E  ++ +  +A  R 
Sbjct: 273 QNITPPDFETRIAILRNKIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRH 332

Query: 228 -MGITRSLAAEVLKETQQ 244
              IT  +AAE ++  +Q
Sbjct: 333 LKEITIDIAAEAIRARKQ 350


>gi|254796642|ref|YP_003081478.1| chromosomal replication initiator protein DnaA [Neorickettsia
           risticii str. Illinois]
 gi|254589879|gb|ACT69241.1| chromosomal replication initiator protein DnaA [Neorickettsia
           risticii str. Illinois]
          Length = 598

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 85/241 (35%), Gaps = 31/241 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLAN--IWSDKS 88
             + D  +V  + E A                 S  + L G  G GK+ L +  +W  K+
Sbjct: 262 SRTFDSFVVGKSNELAFTASKRVAEAAELPIPGSNPLFLYGGVGLGKTHLMHAIVWHIKA 321

Query: 89  RSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQLF 127
                  I  S +                    +  +   ++++D+  +   +    + F
Sbjct: 322 NYADRRVIYLSAEKFMHKYITALKNKDMMSFKQIFRSVDVLMVDDVQFISGKESTQEEFF 381

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++ + +  L+++A   P         + SRL    V  I+    +    ++     
Sbjct: 382 HTFNALIEQNKQLVISADRSPSDLQGVEERIQSRLSWGLVADINQTTFELRVGILESKLE 441

Query: 188 D--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                I + KK+  ++ + +  ++   E  ++K+   +   G  +T   A ++L +  + 
Sbjct: 442 QMKSDIVVPKKVVEFMARNIVSNVRELEGALNKVIAHSEITGSVVTVDSAKDLLADILRT 501

Query: 246 D 246
           +
Sbjct: 502 N 502


>gi|86607504|ref|YP_476266.1| chromosomal replication initiation protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123765419|sp|Q2JHS1|DNAA_SYNJB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|86556046|gb|ABD01003.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 467

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 76/237 (32%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
               S    +V      A     +    P R    + L G  G GK+ L           
Sbjct: 128 NPKYSFSRFVVGPNNRMAHAAALAVADKPGRAYNPLFLCGGVGLGKTHLMQAIGHYQLEA 187

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
             ++  F    +   + LID  +                +L++D+  ++  +    + FH
Sbjct: 188 NPQAKVFYVSTERFTNDLIDAIRRDSMQSFREHYRDVDILLVDDVQFIEGKEYTQEEFFH 247

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++ A   P         LCSR     + +I  PD +    ++ K    
Sbjct: 248 TFNTLHESGKQIVLAADRSPHLIPRLQERLCSRFSMGLIAEIQSPDIETRMAILKKKAEY 307

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             + +   +  YI      ++   E  + +        G+ ++      +L    + 
Sbjct: 308 EGMNLPADVIEYIATTYTSNIRELEGALIRAVAYVSISGLPMSVETIQPILNPPSEP 364


>gi|330444487|ref|YP_004377473.1| chromosomal replication initiator protein DnaA [Chlamydophila
           pecorum E58]
 gi|328807597|gb|AEB41770.1| chromosomal replication initiator protein DnaA [Chlamydophila
           pecorum E58]
          Length = 461

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 82/245 (33%), Gaps = 36/245 (14%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP------SWPSRVVILVGPSGSGKSC 79
            Q     P    +S    LV S  +   R++  +       S+P   + L GP G+GK+ 
Sbjct: 99  MQYGEVLPE---MSFSSFLVSSENDLPFRILQEFARIEEGKSFPFNPIYLFGPEGAGKTH 155

Query: 80  LANIWSDKSRSTRFSNIAKSLD------------------SILIDTRKPVLLEDIDLLDF 121
           L        R +    +  S D                           + +E+I++   
Sbjct: 156 LMQAAIHMLRESCDKVLYVSSDLFTEHLVSAIRSGEMQRFRAFYRNVDALFIENIEVFSG 215

Query: 122 ---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
                 + FH  NS+H     +++++   P         L SR +   VV I     + L
Sbjct: 216 KNATQEEFFHTFNSLHTEGKLIVISSCYAPADLKAMEERLISRFEWGVVVPIQPLRTEGL 275

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             ++++    + I I +    +++  +  ++      +  +            + L+ ++
Sbjct: 276 RNLLMRQAEIQGIRIQEFALDFLISSLSANVKNLLHAIGLL------SKRVAYKKLSQQL 329

Query: 239 LKETQ 243
           L E  
Sbjct: 330 LYEDD 334


>gi|225552151|ref|ZP_03773091.1| chromosomal replication initiator protein DnaA [Borrelia sp. SV1]
 gi|225371149|gb|EEH00579.1| chromosomal replication initiator protein DnaA [Borrelia sp. SV1]
          Length = 485

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++    + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 145 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 204

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 205 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 264

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    ++ K   +  
Sbjct: 265 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 324

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 325 INVPKNILNLVAQKVTTNIRDLEAAVTKL 353


>gi|162448270|ref|YP_001610637.1| chromosomal replication initiator protein DnaA [Sorangium
           cellulosum 'So ce 56']
 gi|161158852|emb|CAN90157.1| chromosomal replication initiator protein DnaA [Sorangium
           cellulosum 'So ce 56']
          Length = 471

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 82/238 (34%), Gaps = 27/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--- 88
               +    +V  + + A     +      R    + + G +G GK+ L +  + +    
Sbjct: 135 NPKHTFASFVVGPSNQLAHAAAIAAAGGGGRRYNPLFICGGTGLGKTHLMHAIAHRVFEG 194

Query: 89  --RSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLLDFND---TQLF 127
              +      A+   +  I   +                 +L++DI  L   +    + F
Sbjct: 195 RPDARIIYVSAEKFTNDFITAIQHHRMDEFRTRYRSSCDVLLVDDIQFLAGREQTQEEFF 254

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H  D  +++T+  +P +       L SR     V  I +P+ +    ++    A
Sbjct: 255 HTFNALHTLDRQIVVTSDKYPQNLERMEERLVSRFSWGLVADIQVPELETRVAIVRNKAA 314

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
              I +   +A Y+ Q +  ++   E  + ++   +   G  +    A   +  T   
Sbjct: 315 LEGIALTDDVALYLAQMVRSNVRELEGTLIRLAAKSSLTGRPVDLPFARAEITATSPP 372


>gi|289450862|ref|YP_003474445.1| chromosomal replication initiator protein DnaA [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185409|gb|ADC91834.1| chromosomal replication initiator protein DnaA [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 438

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 81/244 (33%), Gaps = 26/244 (10%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLANIW 84
           Q           + D+ +V S+   A     S          + L G SG GK+ L +  
Sbjct: 95  QTSIEGNINPAFTFDNFIVGSSNAHAHAACVSVAQNSRVFNPLFLYGGSGLGKTHLLHAI 154

Query: 85  -----SDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFNDT 124
                  +          +   +  I T +                +L++DI  ++  + 
Sbjct: 155 GNYVKQHQPEKHIIYVPCEQFVNEFIRTIRENSYDSFRQKYRNCDMLLIDDIQFIESKEQ 214

Query: 125 ---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + F   N++ +  S+++MT    P S       L +R  +  +V I++P+ +    +
Sbjct: 215 MQIEFFSTFNALTENGSNIIMTCDKPPHSLSSLEERLRTRFASGVIVDINIPNFETRVAI 274

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + K      I +   +  YI      S+   E     + + +   G  +  S+A   L  
Sbjct: 275 LQKRAEFLNIQVSYDILEYIAHNFVSSIRELEGAFTTVISYSYISG-KLDLSVAKAALNN 333

Query: 242 TQQC 245
               
Sbjct: 334 LISP 337


>gi|224541288|ref|ZP_03681827.1| hypothetical protein CATMIT_00448 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525792|gb|EEF94897.1| hypothetical protein CATMIT_00448 [Catenibacterium mitsuokai DSM
           15897]
          Length = 459

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 74/209 (35%), Gaps = 27/209 (12%)

Query: 38  ISRDDLLVHSAIEQA--VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RS 90
           ++ D+ +V +    A    L  +        + L   SG GK+ L N   +         
Sbjct: 121 LTFDNFVVGNCNRIAQNAALAVALKPGTYNPLFLHSNSGLGKTHLLNAIGNYVKKKFPGK 180

Query: 91  TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132
                 A++  +  ++                   +L++DI  +   +      F+I N+
Sbjct: 181 RILYTNAEAFVNDYVEAIGNNTIATFNRRYRSVDVLLIDDIQFIANKEGSMEMFFNIFNT 240

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI- 191
           +      +++T+   PV        L SR +    V I  P+ +  + ++ K    R I 
Sbjct: 241 LQHSGKQIVITSDKPPVELKGMENRLVSRFRQGLTVTIDNPEFETAKAILKKKIESRMID 300

Query: 192 -FIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             ID+++  +I     + +   E  V  +
Sbjct: 301 YPIDEEVLDFIASHFNKDVRDLEGAVTTL 329


>gi|311897307|dbj|BAJ29715.1| putative chromosomal replication initiator protein DnaA
           [Kitasatospora setae KM-6054]
          Length = 629

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 89/235 (37%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     SRS 
Sbjct: 291 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYSRSL 350

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 351 FPGTRVRYVSSEEFTNEFINSIRDGKADAFRKRYRDIDILLVDDIQFLASKESTQEEFFH 410

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    + L D L +R +   +  ++ P+ +    ++ K   
Sbjct: 411 TFNTLHNANKQIVLSSDRPPKQL-ITLEDRLRNRFEWGLITDVTPPELETRIAILRKKAI 469

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             Q+     +  +I  R+ R++   E  + ++   A      +   LA  VLK+ 
Sbjct: 470 QEQLNAPADVLEFIASRITRNIRELEGALIRVTAFANLNRAPVDLELAGIVLKDL 524


>gi|304321315|ref|YP_003854958.1| hypothetical protein PB2503_08804 [Parvularcula bermudensis
           HTCC2503]
 gi|303300217|gb|ADM09816.1| hypothetical protein PB2503_08804 [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 21/232 (9%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR---------VVILVGPSGSGK 77
           Q    FP    +        +A + A+  +++W     R         + +L G  G GK
Sbjct: 3   QPSLPFPEAPIVPP--FHEGAATKAALASLNAWYERALRSGAEGGGLTLAVLWGGYGVGK 60

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137
           S LA  +  +  +T  +    S           V+++D D        LF  +N+     
Sbjct: 61  SRLAAEFGRRVGATFLAGPTLS-GLPPRSALPLVVIDDADQASLG--ALFAYVNAALSRP 117

Query: 138 SSLLMTARTFPVSWG-----VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
              L+  R+ P  WG       + DL SRL   TV+++  P+   + +V+     D  + 
Sbjct: 118 QPTLVIGRSRPGRWGGGEDETGVQDLRSRLMGGTVIELDPPEQTAIIQVLAIALRDAGLT 177

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +   L      R+ R  V    +      LA        RSL  + LK   +
Sbjct: 178 VPPALIEETGGRLCRRFVAPLTIAATARRLAGPGKTP--RSLLEQALKSNPE 227


>gi|241889156|ref|ZP_04776460.1| chromosomal replication initiator protein DnaA [Gemella haemolysans
           ATCC 10379]
 gi|241864405|gb|EER68783.1| chromosomal replication initiator protein DnaA [Gemella haemolysans
           ATCC 10379]
          Length = 494

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 85/276 (30%), Gaps = 46/276 (16%)

Query: 3   LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--- 59
              EDY   VP+K      KN               + ++ +V         +  +W   
Sbjct: 127 FPLEDYKHPVPNKNITASKKNP--------TLNKNYTFENFVVGEGNAFTHNI--AWNVA 176

Query: 60  --PSWPSRVVILVGPSGSGKSCLANIWSDKSRS--------------------TRFSNIA 97
             P      + + G  G GK+ L +   ++  +                         + 
Sbjct: 177 VSPGGIYNPLFIYGGVGLGKTHLLHAIGNEMEANFPDFKIECISSEKFLNEFLASIKPMK 236

Query: 98  KSLDSILIDTR--------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTART 146
              +    D            +L++DI  L          FH  N +      +++ +  
Sbjct: 237 DKNNYTNADEDFRRKYRDVDALLIDDIQFLSGKTETQNAFFHTFNELQMNQKQIVLISDR 296

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P         L +R        I+ PD +    +I        I +D++   YI   + 
Sbjct: 297 SPSQLNDLEDRLVTRFSQGITADITPPDFETRMAIIKFKCEQFDIKLDEETLTYISSNVS 356

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++   E ++ ++   A S+    + S+A E+LK  
Sbjct: 357 SNIRELEGVLKRIKFTATSKHEQPSLSIAEEILKSA 392


>gi|313635505|gb|EFS01740.1| chromosomal replication initiator protein DnaA [Listeria seeligeri
           FSL N1-067]
          Length = 296

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 62/186 (33%), Gaps = 26/186 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++     +++++   P         L SR +   +  I+ PD +    ++ K    
Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290

Query: 189 RQIFID 194
             + I 
Sbjct: 291 DGLDIP 296


>gi|315925611|ref|ZP_07921821.1| DNA-directed DNA replication initiator protein [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621152|gb|EFV01123.1| DNA-directed DNA replication initiator protein [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 468

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW------- 84
               + +  ++      A     +    PS     + + G  G GK+ L           
Sbjct: 133 NAKYTFERFVIGENNRFAHAACVAVSEAPSERYNPLFIYGGVGLGKTHLMQAIGNYILTY 192

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                      +   +     I    +    +  + V   L++DI  L   +    + FH
Sbjct: 193 TPDKKVIYVSCETFTNEFIDAIQNKNNLSFRNRYRNVDILLIDDIQFLSGKEGTQEEFFH 252

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L SR +   +  IS P+ +    ++ K    
Sbjct: 253 TFNALHDENKQIVISSDRPPREIPKLAERLRSRFEMGLITDISTPNFETRMAILRKKAES 312

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               I   + ++I   +  ++   E  +  +   +   G  I+   A E L + 
Sbjct: 313 NAEDIPDDVMSFIADNIHSNIRELEGALTTVVAYSKLHGETISLDFAREALADL 366


>gi|212715149|ref|ZP_03323277.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661830|gb|EEB22405.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 33/238 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD---------K 87
            D  +   +   A  +  +           + + G SG GK+ L N   +         K
Sbjct: 155 FDTFVPGDSNRFARTVALAVAEGSGHDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPSLK 214

Query: 88  SRSTRFSNIAKSLDSILIDTR----------------KPVLLEDIDLLDFNDTQL---FH 128
            R              L DT                   +L++DI  L   D  L   FH
Sbjct: 215 VRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLSGKDATLEQFFH 274

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++HQ +  +++ +   P         L SR ++   V +  PD +    ++  +  +
Sbjct: 275 TFNTLHQANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPDLETRIAILRMIAHE 334

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
               +   +   I +R   ++   E  ++++  +A   G  +TR+LA   L++    D
Sbjct: 335 S--NVQDDVLNLIAERFTENIRELEGALNRVTAMASLSGQPVTRALAEHTLQDFFATD 390


>gi|166154461|ref|YP_001654579.1| chromosomal replication initiation protein [Chlamydia trachomatis
           434/Bu]
 gi|166155336|ref|YP_001653591.1| chromosomal replication initiation protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335720|ref|ZP_07223964.1| chromosomal replication initiation protein [Chlamydia trachomatis
           L2tet1]
 gi|165930449|emb|CAP03942.1| Chromosomal replication initiation protein [Chlamydia trachomatis
           434/Bu]
 gi|165931324|emb|CAP06896.1| Chromosomal replication initiation protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 456

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 28/213 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWP-------SWPSRVVILVGPSGSGKSCLANIWSDK 87
              +S  + LV    +  VR++  +         +P   + L GP  SGK+ L       
Sbjct: 104 DPNMSFANFLVTPENDLPVRILQEFAKVSEQGKGFPFNPIYLFGPESSGKTHLMQAAVGG 163

Query: 88  SRSTRFSNIAKSLD------------------SILIDTRKPVLLEDIDLLDF---NDTQL 126
            R      +  + +                         + + +EDI++L        + 
Sbjct: 164 LREAGVKTLYVTSELFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEF 223

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  NS+H     +++++   P         L SR +    + +S    + L+  + +  
Sbjct: 224 FHTFNSLHTEGKLIVISSTFAPGDLKAMEERLISRFEWGISIPVSPLTREGLKSFLERRI 283

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               I I++    +++Q +   +      +  +
Sbjct: 284 EKLNIRIEETALDFLIQALSSHVKSLLHALTTL 316


>gi|241765812|ref|ZP_04763752.1| chromosomal replication initiator protein DnaA [Acidovorax
           delafieldii 2AN]
 gi|241364294|gb|EER59449.1| chromosomal replication initiator protein DnaA [Acidovorax
           delafieldii 2AN]
          Length = 471

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 26/240 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--- 82
            F       ++ + L+  +A   A          P  +   + + G  G GK+ L +   
Sbjct: 131 AFRTRLNPALTFETLVEGTANRMARSAAMHVAGMPGHLYNPLFIYGGVGLGKTHLVHAVG 190

Query: 83  --------------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFND-- 123
                         I +++  S       +       +       +L++D+      D  
Sbjct: 191 NRLLQDKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANKDRT 250

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + F+   ++    S ++MT+ T+P         L SR  +   V I  P+ +    ++
Sbjct: 251 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 310

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +         + +++A ++ + +  ++   E  + K+   +      I+  LA E L++ 
Sbjct: 311 INKARVEGTEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEISIQLAREALRDL 370


>gi|120608715|ref|YP_968393.1| chromosomal replication initiation protein [Acidovorax citrulli
           AAC00-1]
 gi|120587179|gb|ABM30619.1| chromosomal replication initiator protein DnaA [Acidovorax citrulli
           AAC00-1]
          Length = 475

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 88/250 (35%), Gaps = 26/250 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75
             P ++     F       ++ + L+  +A   A          P  +   + + G  G 
Sbjct: 125 SAPSDEPAAAPFRSRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGL 184

Query: 76  GKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLED 115
           GK+ L +        DK  +      A+   S ++                    +L++D
Sbjct: 185 GKTHLVHAVGNRLLQDKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKAHYHSLDLLLIDD 244

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +      D    + F+   ++    S ++MT+ T+P         L SR  +   V I  
Sbjct: 245 VQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVTIEP 304

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+ +    +++         + +++A ++ + +  ++   E  + K+   +      ++ 
Sbjct: 305 PELEMRVAILINKARAESAEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSI 364

Query: 233 SLAAEVLKET 242
            LA E L++ 
Sbjct: 365 QLAREALRDL 374


>gi|81251068|gb|ABB69872.1| DNA replication initiator protein [Nitrosospira sp. GS832]
          Length = 475

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 92/258 (35%), Gaps = 28/258 (10%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVV 67
            VP ++     + K E+           + +  +   A + A      +   P       
Sbjct: 119 VVPVQKFAMDAREKREKNPSRL--NPSFTLNSFVTGKANQLARAGAIQVAERPGTAYNPF 176

Query: 68  ILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID--------------T 107
            + G  G GK+ L           + +   R+ +  + +  ++                +
Sbjct: 177 FIYGGVGLGKTHLIQAIGNFVLEHNSTAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHS 236

Query: 108 RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI           + F+  N++ +    +++T  ++P         L SR   
Sbjct: 237 LDVLLIDDIQFFGGKNRTQEEFFYAFNALIEAHRQVIITCDSYPKEISGMEERLISRFGW 296

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             +V +  P+ +    +++K      I +D+ +A +I + +  ++   E  + ++   + 
Sbjct: 297 GLIVAVEPPELEMRVAILLKKALMENIVLDENVAFFIAKHIRSNVRELEGALKRVLAYSR 356

Query: 225 SRGMGITRSLAAEVLKET 242
             G  ++  LA E LK+ 
Sbjct: 357 FTGHSLSLDLAREALKDL 374


>gi|284041472|ref|YP_003391812.1| chromosomal replication initiator protein DnaA [Conexibacter woesei
           DSM 14684]
 gi|283945693|gb|ADB48437.1| chromosomal replication initiator protein DnaA [Conexibacter woesei
           DSM 14684]
          Length = 453

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 27/237 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87
                   + D  ++      A     +    P +    + + GP G GK+ L +  ++ 
Sbjct: 106 DESFNPKYTFDQFVIGDGNRLAHAAALAVAELPGQAYNPLFIYGPPGLGKTHLLHAIANY 165

Query: 88  SRS------TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLL---DFNDT 124
            RS       R++ I    +  +   R                +L++D+  L      + 
Sbjct: 166 VRSYGDGMTVRYTTIEAFTNRFITALRSSSVEEFKRRYRDTDILLIDDVQFLQSKAKTEE 225

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++++  S L++T    P         L  R ++  V  I  PD      ++ K
Sbjct: 226 EFFHTFNALYETGSQLVVTCDRMPRDMNALAERLRERFESGLVTDIRAPDLATRMTILRK 285

Query: 185 MFADRQIFI-DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                 + +        I  R+  ++   +  + ++       G  I R+L   VL 
Sbjct: 286 RVQHDGVQLASPDAIEPIADRITTNIRALQGALIRVVAFHSLTGRPIDRALVTHVLD 342


>gi|284028000|ref|YP_003377931.1| chromosomal replication initiator protein DnaA [Kribbella flavida
           DSM 17836]
 gi|283807293|gb|ADB29132.1| chromosomal replication initiator protein DnaA [Kribbella flavida
           DSM 17836]
          Length = 604

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST 91
               + +  ++ S+   A     +    P +     ++ G SG GK+ L +      RS 
Sbjct: 264 NPKYTFETFVIGSSNRFAHAAAVAVAEAPGKAYNPQLIYGDSGLGKTHLLHAIGHYVRSL 323

Query: 92  --------------------RFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFH 128
                                  +   S           +L++DI  L+       + FH
Sbjct: 324 YTGARVRYVSSEEFTNDFINAIRDDKASQFQRRYRDVDVLLIDDIQFLEGKIQTQEEFFH 383

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         L +R +   +  I  PD +    ++ K  A 
Sbjct: 384 TFNTLHNANKQIVISSDRAPKRLEALEDRLRNRFEWGLITDIQPPDLETRIAILRKKAAT 443

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++    ++  +I  +++ ++   E  + ++   A      +  SLA  VLK+ 
Sbjct: 444 ERLTAPPEVLEFIASKVQTNIRELEGALIRVTAFASLNRQPVDLSLAEIVLKDL 497


>gi|27904525|ref|NP_777651.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|29839271|sp|P59567|DNAA_BUCBP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|27903922|gb|AAO26756.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 457

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 92/235 (39%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSD---- 86
               +  +     + + A + I      P       + L G SG GK+ L +  ++    
Sbjct: 122 NTNYTFQNFTKGQSNQLAFKTIYKIAHNPGKNYFNPLFLYGKSGLGKTHLLHAVANTILK 181

Query: 87  ----------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLF 127
                           ++  T   N           +   +L++DI    +   +  +LF
Sbjct: 182 YKNTIKIIYINSENFIQNMITSLKNNTIEEFKKYYRSVNTLLIDDIQFFAYKKHSQEELF 241

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H IN++   +  +++T+  FP         L SR +    ++I  PD +   K+++K   
Sbjct: 242 HTINALLNRNQQIIITSDQFPQKIHGIETRLKSRFECGLTIRIDPPDLNTRTKILIKKSH 301

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              I +  K+A +I + ++ ++   E  ++K+   + S+   IT + A + L+E 
Sbjct: 302 IYDINLSYKVAFFIAKNLKSNIRELEGALNKILANSDSKKKIITINFAYKTLQEL 356


>gi|329769245|ref|ZP_08260663.1| chromosomal replication initiator protein DnaA [Gemella sanguinis
           M325]
 gi|328839336|gb|EGF88917.1| chromosomal replication initiator protein DnaA [Gemella sanguinis
           M325]
          Length = 491

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 84/240 (35%), Gaps = 32/240 (13%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS---- 90
            + D+ +V +    A  +  +    P  +   + + G +G GK+ L +   ++       
Sbjct: 153 YTFDNFVVGAGNIYAHNVAYNVADSPGGIYNPLFIYGGAGLGKTHLLHAIGNEMEKNFPE 212

Query: 91  ----------------TRFSNIAKSLDSILIDTRK------PVLLEDIDLLDF---NDTQ 125
                                +    D+   D R+       +L++DI  L         
Sbjct: 213 FKIECISSEKFLNEFLASIKPMKNKNDNADEDFRRKYRDIDALLIDDIQFLSGKTETQNA 272

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N +      +++ +   P         L +R +      I+ PD +    ++   
Sbjct: 273 FFHTFNELQMNQKQIVLISDKSPSQLNDLEDRLVTRFEQGVTTDITPPDFETRMAILKYK 332

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                I +D++   YI   +  ++   E ++  + +++ +     +  +A E+LK+ ++ 
Sbjct: 333 CTQFDIELDEETLIYISNNVSSNIRELEGVLKSIKSMSATMNKKPSLHIAEEILKDVRKA 392


>gi|332365094|gb|EGJ42859.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK355]
          Length = 450

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + D+ +           A+ + ++  +     + + G  G GK+ L N  
Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165

Query: 85  SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121
            ++          K + +                     +  +   +L++DI  L     
Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + F+  N++H  +  +++T+   P         L +R K      I+ PD +    
Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239
           ++     D           Y+  + + ++   E  ++ +  +A  R    IT  +AAE +
Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345

Query: 240 KETQQ 244
           +  +Q
Sbjct: 346 RARKQ 350


>gi|332364164|gb|EGJ41941.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK49]
          Length = 450

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + D+ +           A+ + ++  +     + + G  G GK+ L N  
Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165

Query: 85  SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121
            ++          K + +                     +  +   +L++DI  L     
Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + F+  N++H  +  +++T+   P         L +R K      I+ PD +    
Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239
           ++     D           Y+  + + ++   E  ++ +  +A  R    IT  +AAE +
Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345

Query: 240 KETQQ 244
           +  +Q
Sbjct: 346 RARKQ 350


>gi|332359496|gb|EGJ37315.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK1056]
          Length = 450

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + D+ +           A+ + ++  +     + + G  G GK+ L N  
Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165

Query: 85  SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121
            ++          K + +                     +  +   +L++DI  L     
Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + F+  N++H  +  +++T+   P         L +R K      I+ PD +    
Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239
           ++     D           Y+  + + ++   E  ++ +  +A  R    IT  +AAE +
Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345

Query: 240 KETQQ 244
           +  +Q
Sbjct: 346 RARKQ 350


>gi|325695760|gb|EGD37659.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK150]
          Length = 450

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + D+ +           A+ + ++  +     + + G  G GK+ L N  
Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165

Query: 85  SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121
            ++          K + +                     +  +   +L++DI  L     
Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + F+  N++H  +  +++T+   P         L +R K      I+ PD +    
Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239
           ++     D           Y+  + + ++   E  ++ +  +A  R    IT  +AAE +
Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345

Query: 240 KETQQ 244
           +  +Q
Sbjct: 346 RARKQ 350


>gi|324991866|gb|EGC23789.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK405]
 gi|324996244|gb|EGC28154.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK678]
 gi|325698032|gb|EGD39913.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK160]
 gi|327458490|gb|EGF04840.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK1]
 gi|327471608|gb|EGF17051.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK408]
          Length = 450

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + D+ +           A+ + ++  +     + + G  G GK+ L N  
Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165

Query: 85  SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121
            ++          K + +                     +  +   +L++DI  L     
Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + F+  N++H  +  +++T+   P         L +R K      I+ PD +    
Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239
           ++     D           Y+  + + ++   E  ++ +  +A  R    IT  +AAE +
Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345

Query: 240 KETQQ 244
           +  +Q
Sbjct: 346 RARKQ 350


>gi|324989578|gb|EGC21524.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK353]
          Length = 450

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + D+ +           A+ + ++  +     + + G  G GK+ L N  
Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165

Query: 85  SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121
            ++          K + +                     +  +   +L++DI  L     
Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + F+  N++H  +  +++T+   P         L +R K      I+ PD +    
Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239
           ++     D           Y+  + + ++   E  ++ +  +A  R    IT  +AAE +
Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345

Query: 240 KETQQ 244
           +  +Q
Sbjct: 346 RARKQ 350


>gi|323350829|ref|ZP_08086488.1| DNA-directed DNA replication initiator protein [Streptococcus
           sanguinis VMC66]
 gi|322123003|gb|EFX94706.1| DNA-directed DNA replication initiator protein [Streptococcus
           sanguinis VMC66]
 gi|325686477|gb|EGD28506.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK72]
 gi|327463834|gb|EGF10150.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK1057]
          Length = 450

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + D+ +           A+ + ++  +     + + G  G GK+ L N  
Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165

Query: 85  SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121
            ++          K + +                     +  +   +L++DI  L     
Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + F+  N++H  +  +++T+   P         L +R K      I+ PD +    
Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239
           ++     D           Y+  + + ++   E  ++ +  +A  R    IT  +AAE +
Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345

Query: 240 KETQQ 244
           +  +Q
Sbjct: 346 RARKQ 350


>gi|296267999|ref|YP_003650631.1| chromosomal replication initiator protein DnaA [Thermobispora
           bispora DSM 43833]
 gi|296090786|gb|ADG86738.1| chromosomal replication initiator protein DnaA [Thermobispora
           bispora DSM 43833]
          Length = 527

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 82/235 (34%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + +  ++ ++      A   +   P+     + + G SG GK+ L +     ++S 
Sbjct: 187 NAKYTFETFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAQSL 246

Query: 92  R--------------------FSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128
                                  +               +L++DI  L+  +    + FH
Sbjct: 247 YDGARVRYVSSEEFTNEFINSIRDHKADEFRARYRAVDILLVDDIQFLEGKEQTQEEFFH 306

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H     +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 307 TFNTLHNASKQIVISSDRAPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 365

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              +    ++  YI  R+  ++   E  + ++   A      +   LA  VLK+ 
Sbjct: 366 QEGLAAPPEVLEYIASRISTNIRELEGALIRVTAFASLNRQPVDIELAEMVLKDL 420


>gi|126640116|ref|YP_001083100.1| chromosomal replication initiation protein [Acinetobacter baumannii
           ATCC 17978]
          Length = 398

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VILVGPSGSGKSCLANI-----WS 85
               +    +   + + A             S+   + L GP+G GK+ L          
Sbjct: 63  NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFLYGPTGLGKTHLMQAVGNALLQ 122

Query: 86  DKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---F 127
            K  +      ++S     + +                  +L++DI LL   +  L   F
Sbjct: 123 AKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFF 182

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++      +++T+  +P       P L SR      V +  PD +   ++++K   
Sbjct: 183 YTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLKKAE 242

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  + + +  A +I Q++  ++   E  ++K+  ++  +G  I   +  E LK+ 
Sbjct: 243 NSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAPIDLDVVRESLKDV 297


>gi|125716888|ref|YP_001034021.1| chromosomal replication initiation protein [Streptococcus sanguinis
           SK36]
 gi|125496805|gb|ABN43471.1| Chromosomal replication initiator protein dnaA, putative
           [Streptococcus sanguinis SK36]
          Length = 450

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + D+ +           A+ + ++  +     + + G  G GK+ L N  
Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165

Query: 85  SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121
            ++          K + +                     +  +   +L++DI  L     
Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + F+  N++H  +  +++T+   P         L +R K      I+ PD +    
Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239
           ++     D           Y+  + + ++   E  ++ +  +A  R    IT  +AAE +
Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345

Query: 240 KETQQ 244
           +  +Q
Sbjct: 346 RARKQ 350


>gi|326314824|ref|YP_004232496.1| chromosomal replication initiator protein DnaA [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323371660|gb|ADX43929.1| chromosomal replication initiator protein DnaA [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 473

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 88/250 (35%), Gaps = 26/250 (10%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75
             P ++     F       ++ + L+  +A   A          P  +   + + G  G 
Sbjct: 123 STPADEPAAAPFRSRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGL 182

Query: 76  GKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLED 115
           GK+ L +        DK  +      A+   S ++                    +L++D
Sbjct: 183 GKTHLVHAVGNRLLQDKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKAHYHSLDLLLIDD 242

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +      D    + F+   ++    S ++MT+ T+P         L SR  +   V I  
Sbjct: 243 VQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVTIEP 302

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           P+ +    +++         + +++A ++ + +  ++   E  + K+   +      ++ 
Sbjct: 303 PELEMRVAILINKARAESAEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSI 362

Query: 233 SLAAEVLKET 242
            LA E L++ 
Sbjct: 363 QLAREALRDL 372


>gi|296132602|ref|YP_003639849.1| chromosomal replication initiator protein DnaA [Thermincola sp. JR]
 gi|296031180|gb|ADG81948.1| chromosomal replication initiator protein DnaA [Thermincola potens
           JR]
          Length = 339

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 95/270 (35%), Gaps = 37/270 (13%)

Query: 4   MKEDYSFFVPD-----KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS 58
           +K + SF  P+      +          +L          + D  +V +    A     +
Sbjct: 74  LKVELSFIFPETGEQMSESEINSSAPPTRL------NPRYTFDTFVVGNNNRLAHAAALA 127

Query: 59  WPSWPSRV---VILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRK- 109
               P++V   + + G  G GK+ L     + +      +      A++    LI+  + 
Sbjct: 128 VAKSPAKVYNPLFICGGVGLGKTHLIQAIGNFALENNPGARVAYISAEAFTMELINAIRD 187

Query: 110 --------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
                          ++++DI  L   +    + F+  N++++ +  +++  +  P    
Sbjct: 188 DRTAEFRSKYRNMDILIIDDIHYLAGKERTQEEFFYTFNALYEANKQIIVAGKQAPKQLP 247

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                +CSR +   +  I  PD +   +++ K      + +   +  YI  +   +    
Sbjct: 248 ALDESICSRFEGGLIADIQPPDLETRTEILRKRAEAENVHVPGDVITYIADQFHSNTREL 307

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           E  + ++   A  +   IT  LA E LK  
Sbjct: 308 EGALTRIILFASVKQSQITLDLADEALKGM 337


>gi|260553772|ref|ZP_05826042.1| chromosomal replication initiator protein DnaA [Acinetobacter sp.
           RUH2624]
 gi|260405076|gb|EEW98576.1| chromosomal replication initiator protein DnaA [Acinetobacter sp.
           RUH2624]
          Length = 465

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 87/238 (36%), Gaps = 33/238 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLID-------SWPSWPSRVVILVGPSGSGKSCLANI---- 83
               +    +   + + A            +    P   + L GP+G GK+ L       
Sbjct: 130 NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNP---LFLYGPTGLGKTHLMQAVGNA 186

Query: 84  -WSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL- 126
               K  +      ++S     + +                  +L++DI LL   +  L 
Sbjct: 187 LLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLV 246

Query: 127 --FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             F+  N++      +++T+  +P       P L SR      V +  PD +   ++++K
Sbjct: 247 EFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLK 306

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              +  + + +  A +I Q++  ++   E  ++K+  ++  +G  I   +  E LK+ 
Sbjct: 307 KAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAPIDLDVVRESLKDV 364


>gi|255348609|ref|ZP_05380616.1| chromosomal replication initiation protein [Chlamydia trachomatis
           70]
 gi|255503149|ref|ZP_05381539.1| chromosomal replication initiation protein [Chlamydia trachomatis
           70s]
 gi|255506827|ref|ZP_05382466.1| chromosomal replication initiation protein [Chlamydia trachomatis
           D(s)2923]
 gi|289525289|emb|CBJ14765.1| Chromosomal replication initiation protein [Chlamydia trachomatis
           Sweden2]
 gi|296434838|gb|ADH17016.1| chromosomal replication initiation protein [Chlamydia trachomatis
           E/150]
 gi|296438558|gb|ADH20711.1| chromosomal replication initiation protein [Chlamydia trachomatis
           E/11023]
          Length = 456

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 28/213 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWP-------SWPSRVVILVGPSGSGKSCLANIWSDK 87
              +S  + LV    +  VR++  +         +P   + L GP  SGK+ L       
Sbjct: 104 DPNMSFANFLVTPENDLPVRILQEFAKVSEQGKGFPFNPIYLFGPESSGKTHLMQAAVGG 163

Query: 88  SRSTRFSNIAKSLD------------------SILIDTRKPVLLEDIDLLDF---NDTQL 126
            R      +  + +                         + + +EDI++L        + 
Sbjct: 164 LREAGVKTLYVTSELFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEF 223

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  NS+H     +++++   P         L SR +    + +S    + L+  + +  
Sbjct: 224 FHTFNSLHTEGKLIVISSTFAPGDLKAMEERLISRFEWGISIPVSPLTREGLKSFLERRT 283

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               I I++    +++Q +   +      +  +
Sbjct: 284 EKLNIRIEETALDFLIQALSSHVKSLLHALTTL 316


>gi|1079499|gb|AAC43711.1| DnaA protein [Mycobacterium smegmatis]
 gi|1585267|prf||2124373B dnaA gene
          Length = 495

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 80/219 (36%), Gaps = 23/219 (10%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS---------TRFSNIA 97
           ++   A       PS      + +   GSGK+ L +   + ++                 
Sbjct: 142 ASNRFAHARRSRSPSAARPTPVFICRVGSGKTHLLHAHGNYAQRLFPGMRVKYASTEEFT 201

Query: 98  KSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMT 143
               + L D RK            +L++DI  ++  +    + FH  N++H  +  ++++
Sbjct: 202 NDFINSLRDDRKASFKRSYRDIDILLVDDIQFIEGKEGIQEEFFHTFNTLHNSNKQIVIS 261

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +   P           +R +   +  +  P+ +    ++ K     ++ +   +   I  
Sbjct: 262 SDRPPKQLATLEDRFRTRFEWGLITDVQPPELETRIAILRKKAQMDRLDVPDDVLELIAS 321

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +ER++   E  + ++   A      I RSLA  VL++ 
Sbjct: 322 SIERNIRELEGALIRVTAFASLNKTRIDRSLAEVVLRDL 360


>gi|221218113|ref|ZP_03589579.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 72a]
 gi|224533619|ref|ZP_03674208.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi CA-11.2a]
 gi|225548587|ref|ZP_03769634.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 94a]
 gi|225549615|ref|ZP_03770581.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 118a]
 gi|221192061|gb|EEE18282.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 72a]
 gi|224513292|gb|EEF83654.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi CA-11.2a]
 gi|225369892|gb|EEG99339.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 118a]
 gi|225370617|gb|EEH00053.1| chromosomal replication initiator protein DnaA [Borrelia
           burgdorferi 94a]
          Length = 486

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 79/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++ S  + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 146 RYTFENFIIGSNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 205

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L SR      V IS P+ +    ++ K   +  
Sbjct: 266 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 325

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 326 INVPKNILNLVAQKVTTNVRDLEAAVTKL 354


>gi|154483923|ref|ZP_02026371.1| hypothetical protein EUBVEN_01629 [Eubacterium ventriosum ATCC
           27560]
 gi|149735414|gb|EDM51300.1| hypothetical protein EUBVEN_01629 [Eubacterium ventriosum ATCC
           27560]
          Length = 462

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 84/250 (33%), Gaps = 33/250 (13%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLAN-- 82
                     + D  +V S    A    + + +S        + + G  G GK+ L    
Sbjct: 115 ILDANLNKKYTFDSFVVGSNNNIAQVTSLAVAESPGD-VYNPLFIYGGVGLGKTHLIQSI 173

Query: 83  ---IWSDKSRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLL 119
              +  +   +      ++S  + +ID                    +   +L++DI  +
Sbjct: 174 GNFVLKNNPSAKVLYTTSESFTNEVIDLLRKKKTNQEEIIEFRKKYRSVDVLLIDDIQFI 233

Query: 120 DFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              D    ++F+I N +      +++T+   P         L SR +    V I  PD +
Sbjct: 234 SGRDRTQEEIFNIFNDLFMKHKQIVLTSDKKPKDMEGIAERLISRFEQGLTVDIQNPDYE 293

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
               ++ K        ID+ +  YI      ++   E  + ++   +      IT   A+
Sbjct: 294 TRMAILKKKAETSGYNIDEGVLQYIANHFVSNVRELEGSLTRVITFSKISHSPITVDFAS 353

Query: 237 EVLKETQQCD 246
            VL+E    +
Sbjct: 354 GVLQELVAPN 363


>gi|264676137|ref|YP_003276043.1| chromosomal replication initiator protein DnaA [Comamonas
           testosteroni CNB-2]
 gi|299530928|ref|ZP_07044342.1| chromosomal replication initiation protein [Comamonas testosteroni
           S44]
 gi|262206649|gb|ACY30747.1| chromosomal replication initiator protein DnaA [Comamonas
           testosteroni CNB-2]
 gi|298721149|gb|EFI62092.1| chromosomal replication initiation protein [Comamonas testosteroni
           S44]
          Length = 468

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 84/240 (35%), Gaps = 26/240 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--- 82
            F       ++ + L+  +A   A          P  +   + + G  G GK+ L +   
Sbjct: 128 VFRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVG 187

Query: 83  --------------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFND-- 123
                         I +++  S       +       +       +L++D+      D  
Sbjct: 188 NQLLKDKPDAKILYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANKDRT 247

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + F+   ++    S ++MT+ T+P         L SR  +   V I  P+ +    ++
Sbjct: 248 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 307

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +         + +++A ++ + +  ++   E  + K+   +      ++  LA E L++ 
Sbjct: 308 INKARAENADMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 367


>gi|24378533|ref|NP_720488.1| chromosomal replication initiation protein [Streptococcus mutans
           UA159]
 gi|290579527|ref|YP_003483919.1| chromosomal replication initiator protein [Streptococcus mutans
           NN2025]
 gi|38257598|sp|Q8DWN9|DNAA_STRMU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|24376381|gb|AAN57794.1|AE014853_1 chromosomal replication initiator protein, DnaA [Streptococcus
           mutans UA159]
 gi|254996426|dbj|BAH87027.1| chromosomal replication initiator protein [Streptococcus mutans
           NN2025]
          Length = 452

 Score = 96.8 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 90/267 (33%), Gaps = 40/267 (14%)

Query: 13  PDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV 66
           P   +N   +   E L F           S D+ ++      A      +   P      
Sbjct: 90  PQISQNKTAELATETLPFVQNDL--NPKYSFDNFVIGDENRWAFTASVSVADLPGTTYNP 147

Query: 67  VILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTR------------ 108
           + + G  G GK+ L N   +   +       ++ +    ++  ++  R            
Sbjct: 148 LFIYGGPGLGKTHLLNAIGNSVLASNPKARIKYISAENFINEFVVHIRLQNMDELKKKFR 207

Query: 109 --KPVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
               +L++DI  L          + F+  N++H  +  +++T+   P         L +R
Sbjct: 208 NLDLLLIDDIQSLAKKSLAATQEEFFNTFNALHDNNKQIVLTSDRTPDDLNDLEQRLVTR 267

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            K    V I+ PD +    ++     +       +   Y+  + + ++   E  +  +  
Sbjct: 268 FKWGLTVNITPPDFETRVAILNNKIQEYNYSFLSETIEYLAGQFDSNVRDLEGALKDI-- 325

Query: 222 LALSRGMG----ITRSLAAEVLKETQQ 244
            +L         IT  +AAE ++  +Q
Sbjct: 326 -SLVANFKKLDVITVEVAAEAIRARKQ 351


>gi|237784638|ref|YP_002905343.1| chromosomal replication initiator protein [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757550|gb|ACR16800.1| chromosomal replication initiator protein [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 605

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 95/261 (36%), Gaps = 28/261 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68
               N +P+ ++EQ   S         + D+L+             +    P++    + 
Sbjct: 245 GYINNARPQRRQEQKPDSERSWLNENYTFDNLVAGEGNRVVRAAAIAVAENPAQAYNPLF 304

Query: 69  LVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK------------- 109
           + G SG GK+ + +    ++         R+ +I +  +  +   R              
Sbjct: 305 IWGGSGLGKTHILHAIGHRALELRPNLRVRYVSIEEYTNEWINSIRNNRGEDFKRKYRSF 364

Query: 110 -PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI  L        + FH  N++H     +++ +   P       P L +R +  
Sbjct: 365 DILLVDDIQFLAGKPETQIEFFHNFNALHGAQKQIVLCSDRSPKELTELEPRLRTRFQWG 424

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
               I  PD +    ++          +  ++ ++I ++   S+   E  ++K+  ++  
Sbjct: 425 FTQDIQKPDLETRIAILRLKAERENAQVPSEVLSFIAEQKAESVRELEGALNKVLIVSSI 484

Query: 226 RGMGITRSLAAEVLKETQQCD 246
           +   +T  +A + L++    +
Sbjct: 485 QHTPVTLEMARDQLQDLVAPE 505


>gi|260431698|ref|ZP_05785669.1| chromosomal replication initiator protein DnaA [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415526|gb|EEX08785.1| chromosomal replication initiator protein DnaA [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 467

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87
           P     + D  +V    E A                 ++L G  G GK+ L +   W  K
Sbjct: 126 PLDARFTFDTFVVGKPNELAHAAARRVSEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 185

Query: 88  SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126
           ++    + +  S +                    L  +   ++++D+  +   D    + 
Sbjct: 186 TKRPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 245

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++A   P         + SRL+   VV +   D +    ++    
Sbjct: 246 FHTFNALVDQNKQIIISADRAPGEIKDLEERVKSRLQCGLVVDLHPTDYELRLGILQTKV 305

Query: 187 ADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                    + I   +  ++  R+  ++   E  + ++   A   G  I   L  + L +
Sbjct: 306 QQYTKTYPDLKIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMDLTQDCLAD 365

Query: 242 TQQC 245
             + 
Sbjct: 366 VLRA 369


>gi|33603963|ref|NP_891523.1| chromosomal replication initiation protein [Bordetella
           bronchiseptica RB50]
 gi|61212740|sp|Q7WDJ9|DNAA_BORBR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|33568939|emb|CAE35353.1| chromosomal replication initiator protein [Bordetella
           bronchiseptica RB50]
          Length = 480

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 27/232 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89
           ++ ++ +   A + A          P      + L G  G GK+ L +       +  + 
Sbjct: 148 LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 207

Query: 90  STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136
                  A    S ++   +    +D       +DLL  +D Q F   N   +       
Sbjct: 208 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 267

Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                   +++T+ T+P         L SR  +   V I  P+ +    ++++      +
Sbjct: 268 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 327

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242
            + +++A +I + +  ++   E  + K+   A   G  + T  +  E LK+ 
Sbjct: 328 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDL 379


>gi|326386028|ref|ZP_08207652.1| chromosomal replication initiator protein DnaA [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209253|gb|EGD60046.1| chromosomal replication initiator protein DnaA [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 506

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 82/242 (33%), Gaps = 33/242 (13%)

Query: 35  CLGISRDDLLVHSAIEQAV------RLIDSWPSWPSRVVILVGPSGSGKSCLANIW---- 84
              ++  + +  S    AV        +++    P   + L   +G GK+ L +      
Sbjct: 171 DPSLTFAEFVTGSGNVLAVNAAQRMAALETPQFSP---LYLKASTGQGKTHLLHAIGHAY 227

Query: 85  -SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLL---DFNDTQ 125
            + K  +  F   A+      +   +                +L++DI  +        +
Sbjct: 228 AAAKPGARIFYCSAERFMIEFVQAMRQHEMIEFKARLRSFDLLLVDDIQFIIGKASTQEE 287

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H I+++      L++ A   P +       L SRL    V  I   D +   K++   
Sbjct: 288 FLHTIDALLSAGKRLVVAADRAPQALDGVEQRLLSRLSMGLVADIQPADIELRRKILQHR 347

Query: 186 FAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            +      +   +  ++ + + R++      ++K+   A   G  ++  LA E L +   
Sbjct: 348 LSRFAATAVPDDVIEFLARTINRNVRELVGGLNKLIAYAQLTGQPVSLQLAEEQLTDILN 407

Query: 245 CD 246
            +
Sbjct: 408 AN 409


>gi|221069747|ref|ZP_03545852.1| chromosomal replication initiator protein DnaA [Comamonas
           testosteroni KF-1]
 gi|220714770|gb|EED70138.1| chromosomal replication initiator protein DnaA [Comamonas
           testosteroni KF-1]
          Length = 468

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 84/240 (35%), Gaps = 26/240 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--- 82
            F       ++ + L+  +A   A          P  +   + + G  G GK+ L +   
Sbjct: 128 VFRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVG 187

Query: 83  --------------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFND-- 123
                         I +++  S       +       +       +L++D+      D  
Sbjct: 188 NQLLKDKPDAKILYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANKDRT 247

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + F+   ++    S ++MT+ T+P         L SR  +   V I  P+ +    ++
Sbjct: 248 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 307

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +         + +++A ++ + +  ++   E  + K+   +      ++  LA E L++ 
Sbjct: 308 INKARAENADMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 367


>gi|294673982|ref|YP_003574598.1| chromosomal replication initiator protein DnaA [Prevotella
           ruminicola 23]
 gi|294471753|gb|ADE81142.1| chromosomal replication initiator protein DnaA [Prevotella
           ruminicola 23]
          Length = 473

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 88/255 (34%), Gaps = 31/255 (12%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSG 74
           D P+  ++QL        G    + +  ++ +      + + +           + GPSG
Sbjct: 124 DAPR--QQQLNPQLDTKKGFH--NYIEGNSNKLPRTVGLSIAEHPGKTTFNPFFIYGPSG 179

Query: 75  SGKSCLANI----WSDKSRSTRFSNIAKSLDSI----------------LIDTRKPVLLE 114
            GK+ L N       +   + R   ++  L  +                   +   ++++
Sbjct: 180 CGKTHLINAIGLKCCELYPNKRVLYVSARLFQVQFTDSVRQNTTNDFINFYQSIDVLIVD 239

Query: 115 DIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DI     +   L   FHI + + +    +++ +   PV        L +R     + ++ 
Sbjct: 240 DIQEWVNSPKTLDTFFHIFDHLFRIGKQIILASDRPPVDLTGVKDRLLTRFACGLIAELE 299

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            P+      ++        + I   +  YI Q    S+   E +V+ +   ++     I 
Sbjct: 300 KPNVQLCVDILNAKCKRDGLKIPADVIEYIAQTANGSVRDLEGVVNSLMAYSIVYNSNID 359

Query: 232 RSLAAEVLKETQQCD 246
             LA  V+K + + D
Sbjct: 360 MKLAERVIKRSVKVD 374


>gi|33591700|ref|NP_879344.1| chromosomal replication initiation protein [Bordetella pertussis
           Tohama I]
 gi|33598884|ref|NP_886527.1| chromosomal replication initiation protein [Bordetella
           parapertussis 12822]
 gi|61212733|sp|Q7VSE0|DNAA_BORPE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61212736|sp|Q7W2K5|DNAA_BORPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|33571343|emb|CAE44820.1| chromosomal replication initiator protein [Bordetella pertussis
           Tohama I]
 gi|33575014|emb|CAE39680.1| chromosomal replication initiator protein [Bordetella
           parapertussis]
 gi|332381119|gb|AEE65966.1| chromosomal replication initiation protein [Bordetella pertussis
           CS]
          Length = 469

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 27/232 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89
           ++ ++ +   A + A          P      + L G  G GK+ L +       +  + 
Sbjct: 137 LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 196

Query: 90  STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136
                  A    S ++   +    +D       +DLL  +D Q F   N   +       
Sbjct: 197 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 256

Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                   +++T+ T+P         L SR  +   V I  P+ +    ++++      +
Sbjct: 257 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 316

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242
            + +++A +I + +  ++   E  + K+   A   G  + T  +  E LK+ 
Sbjct: 317 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDL 368


>gi|169632030|ref|YP_001705766.1| chromosomal replication initiation protein [Acinetobacter baumannii
           SDF]
 gi|226735532|sp|B0VMK0|DNAA_ACIBS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|169150822|emb|CAO99422.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Acinetobacter
           baumannii]
          Length = 465

 Score = 96.8 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VILVGPSGSGKSCLANI-----WS 85
               +    +   + + A             S+   + L GP+G GK+ L          
Sbjct: 130 NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFLYGPTGLGKTHLMQAVGNALLQ 189

Query: 86  DKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---F 127
            K  +      ++S     + +                  +L++DI LL   +  L   F
Sbjct: 190 AKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++      +++T+  +P       P L SR      V +  PD +   ++++K   
Sbjct: 250 YTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLKKAE 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  + + +  A +I Q++  ++   E  ++K+  ++  +G  I   +  E LK+ 
Sbjct: 310 NSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAPIDLDVVRESLKDV 364


>gi|312866847|ref|ZP_07727060.1| chromosomal replication initiator protein DnaA [Streptococcus
           parasanguinis F0405]
 gi|311097630|gb|EFQ55861.1| chromosomal replication initiator protein DnaA [Streptococcus
           parasanguinis F0405]
          Length = 452

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 90/268 (33%), Gaps = 36/268 (13%)

Query: 12  VPDKQKNDQPKNKEEQLF------FSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPS 61
           +P    ++  +     L                + D+ +           A+ + ++  +
Sbjct: 86  IPSNHSSENRRLSSGSLTTEPLPKIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT 145

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILID---------- 106
                + + G  G GK+ L N   ++       +      A++  +  ++          
Sbjct: 146 -TYNPLFIYGGPGLGKTHLLNAIGNQILENIPNARVKYVPAETFINEFLEHLRLGEMKTF 204

Query: 107 -----TRKPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                +   +L++DI  L         + F+  N++H  +  +++T+   P         
Sbjct: 205 KNTYRSLDLLLIDDIQSLGGKKVTTQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEER 264

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L +R K      I+ PD +    ++     D           Y+  + + ++   E  ++
Sbjct: 265 LVTRFKWGLTQNITPPDFETRIAILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALN 324

Query: 218 KMDNLALSRG-MGITRSLAAEVLKETQQ 244
            +  +A  +    IT  +AAE ++  + 
Sbjct: 325 DISLMAKVKKLKEITIDVAAEAIRARKN 352


>gi|222109226|ref|YP_002551490.1| chromosomal replication initiation protein [Acidovorax ebreus TPSY]
 gi|221728670|gb|ACM31490.1| chromosomal replication initiator protein DnaA [Acidovorax ebreus
           TPSY]
          Length = 473

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 88/240 (36%), Gaps = 26/240 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-- 83
            F       ++ + L+  +A   A          P  +   + + G  G GK+ L +   
Sbjct: 133 AFRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVG 192

Query: 84  ---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND---------- 123
                D+  +      A+   S ++ + +    +D       +DLL  +D          
Sbjct: 193 NKLLQDRPDAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQFFANKDRT 252

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + F+   ++    S ++MT+ T+P         L SR  +   V I  P+ +    ++
Sbjct: 253 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 312

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +         + +++A ++ + +  ++   E  + K+   +      ++  LA E L++ 
Sbjct: 313 INKARAEGSEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 372


>gi|317123178|ref|YP_004097290.1| chromosomal replication initiator protein DnaA [Intrasporangium
           calvum DSM 43043]
 gi|315587266|gb|ADU46563.1| chromosomal replication initiator protein DnaA [Intrasporangium
           calvum DSM 43043]
          Length = 579

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 81/249 (32%), Gaps = 27/249 (10%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSG 76
           Q + +  Q           + D  ++ ++         +           + + G SG G
Sbjct: 227 QQRPEPAQAS-DTRLNPKYTFDTFVIGASNRFGHAAAIAVAEAPAKAYNPLFVYGESGLG 285

Query: 77  KSCLANIWSDKSRS--------------------TRFSNIAKSLDSILIDTRKPVLLEDI 116
           K+ L +     +R+                        +   S       +   +L++DI
Sbjct: 286 KTHLLHAIGHYARTMFPNVRVRYVNSEEFTNDFINSIRDDKASAFQSRYRSVDVLLIDDI 345

Query: 117 DLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             L        + FH  N++H  +  +++T+   P         + +R ++  +  +  P
Sbjct: 346 QFLQGKLQTQEEFFHTFNTLHNANKQIVITSDLPPKELSGFEDRMRTRFESGLLTDVQPP 405

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D +    ++ K     ++ +   +  YI      ++   E  + ++   +      +   
Sbjct: 406 DLETRIAILRKKAIQERMSVPDDVLEYIASNFSTNIRELEGALIRVTAFSNLNRQAVDLP 465

Query: 234 LAAEVLKET 242
           LA  VLK+ 
Sbjct: 466 LAEVVLKDV 474


>gi|226735872|sp|A3M0Q4|DNAA_ACIBT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|193075921|gb|ABO10498.2| DNA replication initiator protein [Acinetobacter baumannii ATCC
           17978]
          Length = 465

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VILVGPSGSGKSCLANI-----WS 85
               +    +   + + A             S+   + L GP+G GK+ L          
Sbjct: 130 NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFLYGPTGLGKTHLMQAVGNALLQ 189

Query: 86  DKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---F 127
            K  +      ++S     + +                  +L++DI LL   +  L   F
Sbjct: 190 AKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++      +++T+  +P       P L SR      V +  PD +   ++++K   
Sbjct: 250 YTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLKKAE 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  + + +  A +I Q++  ++   E  ++K+  ++  +G  I   +  E LK+ 
Sbjct: 310 NSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAPIDLDVVRESLKDV 364


>gi|169794207|ref|YP_001712000.1| chromosomal replication initiation protein [Acinetobacter baumannii
           AYE]
 gi|184156325|ref|YP_001844664.1| chromosomal replication initiation protein [Acinetobacter baumannii
           ACICU]
 gi|213155390|ref|YP_002317435.1| chromosomal replication initiator protein DnaA [Acinetobacter
           baumannii AB0057]
 gi|215481762|ref|YP_002323944.1| chromosomal replication initiator protein DnaA [Acinetobacter
           baumannii AB307-0294]
 gi|239503909|ref|ZP_04663219.1| chromosomal replication initiator protein DnaA [Acinetobacter
           baumannii AB900]
 gi|260558093|ref|ZP_05830304.1| chromosomal replication initiator protein DnaA [Acinetobacter
           baumannii ATCC 19606]
 gi|301345945|ref|ZP_07226686.1| chromosomal replication initiation protein [Acinetobacter baumannii
           AB056]
 gi|301512869|ref|ZP_07238106.1| chromosomal replication initiation protein [Acinetobacter baumannii
           AB058]
 gi|301594680|ref|ZP_07239688.1| chromosomal replication initiation protein [Acinetobacter baumannii
           AB059]
 gi|332854713|ref|ZP_08435500.1| replication initiator protein DnaA [Acinetobacter baumannii
           6013150]
 gi|332865593|ref|ZP_08436433.1| replication initiator protein DnaA [Acinetobacter baumannii
           6013113]
 gi|332873307|ref|ZP_08441262.1| replication initiator protein DnaA [Acinetobacter baumannii
           6014059]
 gi|226735529|sp|B7GUX5|DNAA_ACIB3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735530|sp|B7IBH7|DNAA_ACIB5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735531|sp|B2HZA7|DNAA_ACIBC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735771|sp|B0VAF3|DNAA_ACIBY RecName: Full=Chromosomal replication initiator protein DnaA
 gi|169147134|emb|CAM84993.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Acinetobacter
           baumannii AYE]
 gi|183207919|gb|ACC55317.1| ATPase [Acinetobacter baumannii ACICU]
 gi|213054550|gb|ACJ39452.1| chromosomal replication initiator protein DnaA [Acinetobacter
           baumannii AB0057]
 gi|213987186|gb|ACJ57485.1| chromosomal replication initiator protein DnaA [Acinetobacter
           baumannii AB307-0294]
 gi|260408447|gb|EEX01754.1| chromosomal replication initiator protein DnaA [Acinetobacter
           baumannii ATCC 19606]
 gi|322506194|gb|ADX01648.1| dnaA, Chromosomal replication initiator protein [Acinetobacter
           baumannii 1656-2]
 gi|323516070|gb|ADX90451.1| chromosomal replication initiation protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332727870|gb|EGJ59272.1| replication initiator protein DnaA [Acinetobacter baumannii
           6013150]
 gi|332735245|gb|EGJ66322.1| replication initiator protein DnaA [Acinetobacter baumannii
           6013113]
 gi|332738513|gb|EGJ69385.1| replication initiator protein DnaA [Acinetobacter baumannii
           6014059]
          Length = 465

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VILVGPSGSGKSCLANI-----WS 85
               +    +   + + A             S+   + L GP+G GK+ L          
Sbjct: 130 NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFLYGPTGLGKTHLMQAVGNALLQ 189

Query: 86  DKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---F 127
            K  +      ++S     + +                  +L++DI LL   +  L   F
Sbjct: 190 AKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++      +++T+  +P       P L SR      V +  PD +   ++++K   
Sbjct: 250 YTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLKKAE 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  + + +  A +I Q++  ++   E  ++K+  ++  +G  I   +  E LK+ 
Sbjct: 310 NSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAPIDLDVVRESLKDV 364


>gi|311103225|ref|YP_003976078.1| chromosomal replication initiation protein [Achromobacter
           xylosoxidans A8]
 gi|310757914|gb|ADP13363.1| chromosomal replication initiation protein [Achromobacter
           xylosoxidans A8]
          Length = 487

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 27/232 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89
           ++ ++ +   A + A          P      + L G  G GK+ L +       +  + 
Sbjct: 155 LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 214

Query: 90  STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136
                  A    S ++   +    +D       +DLL  +D Q F   N   +       
Sbjct: 215 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 274

Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                   +++T+ T+P         L SR  +   V I  P+ +    ++++      +
Sbjct: 275 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 334

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242
            + +++A +I + +  ++   E  + K+   A   G  + T  +  E LK+ 
Sbjct: 335 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDL 386


>gi|222100623|ref|YP_002535191.1| Chromosomal replication initiator protein dnaA [Thermotoga
           neapolitana DSM 4359]
 gi|221573013|gb|ACM23825.1| Chromosomal replication initiator protein dnaA [Thermotoga
           neapolitana DSM 4359]
          Length = 450

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 88/240 (36%), Gaps = 26/240 (10%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN-------- 82
           P     + ++ +V      A          P +   + + G  G GK+ L          
Sbjct: 107 PLNPAYTFENFVVGPGNSFAYHASLEVAKNPGKYNPLFIYGGVGLGKTHLLQSIGNYIVQ 166

Query: 83  ---------IWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL---DFNDTQL 126
                    I S+K  +    ++ +   +   +  +     +L++DI  L       T+L
Sbjct: 167 REPDLRVMYITSEKFLNDLVDSMKEGKLAEFREKYRKKVDVLLIDDIQFLIGKTGVQTEL 226

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N +H     +++ +   P         L SR +   V K+  PD +  + +  KM 
Sbjct: 227 FHTFNELHDSGKQIVICSDREPHMLKEFQDRLISRFQMGLVAKLEPPDRETRKSIARKML 286

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              +  + +++  ++ + ++ +L   +  + K+     + G  +    A  +LK+  + +
Sbjct: 287 EVEEGELPEEVLDFVAENVDDNLRRLKGAIIKLLVYKETTGREVDLKEAIALLKDFIKPE 346


>gi|121596425|ref|YP_988321.1| chromosomal replication initiation protein [Acidovorax sp. JS42]
 gi|120608505|gb|ABM44245.1| chromosomal replication initiator protein DnaA [Acidovorax sp.
           JS42]
          Length = 473

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 88/240 (36%), Gaps = 26/240 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-- 83
            F       ++ + L+  +A   A          P  +   + + G  G GK+ L +   
Sbjct: 133 AFRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVG 192

Query: 84  ---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND---------- 123
                D+  +      A+   S ++ + +    +D       +DLL  +D          
Sbjct: 193 NKLLQDRPDAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQFFANKDRT 252

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + F+   ++    S ++MT+ T+P         L SR  +   V I  P+ +    ++
Sbjct: 253 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 312

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +         + +++A ++ + +  ++   E  + K+   +      ++  LA E L++ 
Sbjct: 313 INKARAEGSEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 372


>gi|227496605|ref|ZP_03926883.1| chromosomal replication initiator protein DnaA [Actinomyces
           urogenitalis DSM 15434]
 gi|226833885|gb|EEH66268.1| chromosomal replication initiator protein DnaA [Actinomyces
           urogenitalis DSM 15434]
          Length = 525

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               +    +   +   A     +    PSR    + + G SG GK+ L +     +R  
Sbjct: 183 NPRYTFATYVQGKSNRLARTAAAAVAEAPSRAYNPLFIYGGSGLGKTHLLHAIGHYARKL 242

Query: 92  R-----------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFNDTQL---FH 128
                              +++A        D  + V   L++D+   +  +  L   FH
Sbjct: 243 YPGITVKYVNSEEFVSDFIASVADGQMRNFKDRYRNVDILLVDDVQFFEGKEQTLEEFFH 302

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++   +  +++T+    +        L SR +   V  +  PD +  + ++      
Sbjct: 303 TFNALRIAEKQIVLTSDQPALELKGFNNRLISRFQEGLVADVQPPDLETRQAILTLKARA 362

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I + + +  YI  R+  ++   E  + ++   A      I R+LA   LK+ 
Sbjct: 363 DGISVTEDVLEYIASRVTTNIRELEGALVRVTAFASLNKQPIDRTLAEVALKDV 416


>gi|189218018|ref|YP_001938660.1| Chromosomal replication initiator protein dnaA, ATPase
           [Methylacidiphilum infernorum V4]
 gi|254777907|sp|B3DWG6|DNAA_METI4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189184876|gb|ACD82061.1| Chromosomal replication initiator protein dnaA, ATPase
           [Methylacidiphilum infernorum V4]
          Length = 454

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 93/256 (36%), Gaps = 27/256 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K+    P+  +  +F S       S ++ +V    E A     +    P++    + L 
Sbjct: 95  GKKIKSLPREDKSSIFESKGLNTKFSFENFVVGPNSEFAAAAAKAVAESPAKAYNPLFLY 154

Query: 71  GPSGSGKSCLANI----------W-------SDKSRSTRFSNIAKSLDSILIDTRK---P 110
           G  G GK+ L             W       S++  +     I K          +    
Sbjct: 155 GKVGLGKTHLMQAIGNHIVEKNKWILVQYVTSEQFTNEFIEAIQKGSIGQFRKKYRQIDV 214

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L   +    + FH  N +      ++++    P S       L SR +    
Sbjct: 215 LLIDDIQFLAGKERSQEEFFHTFNCLFDGSKQIVLSGDEAPSSLQNLEKRLISRFEWGLT 274

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSR 226
            +I  P  +    ++     +  + ID+K+  +I +R++ ++   E  ++++    ++ +
Sbjct: 275 AEILPPGIEVRLAILKHKLKNYSLSIDEKILEFIAERIKTNVRQLEGALNRLCAYASIHK 334

Query: 227 GMGITRSLAAEVLKET 242
              IT      +LK+ 
Sbjct: 335 EGKITLEETQSLLKDL 350


>gi|33866070|ref|NP_897629.1| chromosomal replication initiation protein [Synechococcus sp. WH
           8102]
 gi|61212711|sp|Q7U605|DNAA_SYNPX RecName: Full=Chromosomal replication initiator protein DnaA
 gi|33639045|emb|CAE08051.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           WH 8102]
          Length = 465

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 83/255 (32%), Gaps = 28/255 (10%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72
            +   P     ++           R   +V      A     +    P R    + + G 
Sbjct: 110 ARESAPSRSPRRVLPGLNPRYVFGR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGG 167

Query: 73  SGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILID---------------TRKPVL 112
            G GK+ L              +       ++  + LID                   +L
Sbjct: 168 VGLGKTHLMQAIGHYRLEIDPSARVSYVSTETFTNDLIDSIRKDGMKAFRDRYRAADLLL 227

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  ++  +    + FH  N++H+    +++ +   P         L SR +   +  
Sbjct: 228 VDDIQFIEGKEYTQEEFFHTFNALHEAGKQVVIASDRPPSQISRLQQRLISRFQMGLIAD 287

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  PD +    ++ K     ++ + + L  Y+  R   ++   E  + +    A   G+ 
Sbjct: 288 IQAPDLETRMAILQKKAEQERMALPRDLIHYLAGRFTSNIRELEGALTRAVAFASITGLP 347

Query: 230 ITRSLAAEVLKETQQ 244
           +T    A +L  T Q
Sbjct: 348 MTVESVAPMLDPTGQ 362


>gi|262371173|ref|ZP_06064494.1| chromosomal replication initiator protein dnaA [Acinetobacter
           johnsonii SH046]
 gi|262313903|gb|EEY94949.1| chromosomal replication initiator protein dnaA [Acinetobacter
           johnsonii SH046]
          Length = 459

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 96/256 (37%), Gaps = 33/256 (12%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VIL 69
           +K++ +   +++ QL          S    +   + + A             S+   + L
Sbjct: 109 EKEEGNSKNSRKRQL------NPLFSFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFL 162

Query: 70  VGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---------------K 109
            GP+G GK+ L           K  +      A+S     + +                 
Sbjct: 163 YGPTGLGKTHLMQAVGNALLQAKPNARVMYMTAESFVQDFVSSLQQGKVEEFKKNCRSLD 222

Query: 110 PVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI LL   +  L   F+  N++      +++T+  +P       P L SR     
Sbjct: 223 LLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGL 282

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            V +  PD +   ++++K      + + +  A +I Q++  ++   E  ++K+  ++  +
Sbjct: 283 SVGVEPPDIETRIEILLKKAESNDVELPRNCALFIAQQVVANVRELEGALNKVVAISRFK 342

Query: 227 GMGITRSLAAEVLKET 242
           G  I   +  E LK+ 
Sbjct: 343 GTAIDLDVVRESLKDV 358


>gi|160895451|ref|YP_001561033.1| chromosomal replication initiation protein [Delftia acidovorans
           SPH-1]
 gi|160361035|gb|ABX32648.1| chromosomal replication initiator protein DnaA [Delftia acidovorans
           SPH-1]
          Length = 468

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 86/240 (35%), Gaps = 26/240 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-- 83
            F       ++ + L+  +A   A          P  +   + + G  G GK+ L +   
Sbjct: 128 VFRTRLNAALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVG 187

Query: 84  ---WSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND-- 123
               +DK  +      A+   S ++                    +L++D+      D  
Sbjct: 188 NKLLADKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANKDRT 247

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + F+   ++    S ++MT+ T+P         L SR  +   V I  P+ +    ++
Sbjct: 248 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 307

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +         + +++A ++ + +  ++   E  + K+   +      ++  LA E L++ 
Sbjct: 308 INKARAENAEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 367


>gi|81251057|gb|ABB69864.1| DNA replication initiator protein [Nitrosospira sp. TCH711]
          Length = 476

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85
               + +  +   A + A      +   P        + G  G GK+ L           
Sbjct: 142 NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIYGGVGLGKTHLIQAIGNFVVEH 201

Query: 86  DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
           + S   R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 202 NPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFY 261

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T  ++P         L SR      V +  P+ +    +++K    
Sbjct: 262 AFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 321

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I +D+ +A +I + +  ++   E  + ++   +   G  ++  LA E LK+ 
Sbjct: 322 EDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGHALSLELAREALKDL 375


>gi|81251061|gb|ABB69867.1| DNA replication initiator protein [Nitrosospira sp. TCH716]
          Length = 476

 Score = 96.4 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85
               + +  +   A + A      +   P        + G  G GK+ L           
Sbjct: 142 NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIYGGVGLGKTHLIQAIGNFVVEH 201

Query: 86  DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
           + S   R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 202 NPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFY 261

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T  ++P         L SR      V +  P+ +    +++K    
Sbjct: 262 AFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 321

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I +D+ +A +I + +  ++   E  + ++   +   G  ++  LA E LK+ 
Sbjct: 322 EDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGHALSLELAREALKDL 375


>gi|269303183|gb|ACZ33283.1| putative chromosomal replication initiator protein DnaA
           [Chlamydophila pneumoniae LPCoLN]
          Length = 460

 Score = 96.4 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 72/214 (33%), Gaps = 28/214 (13%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-------RVVILVGPSGSGKSCLAN---- 82
               ++  + LV    +   R++  +   P          + L GP GSGK+ L      
Sbjct: 104 VNPEMTFSNFLVTPENDLPFRVLQEFTKSPDENGGVTFNPIYLFGPEGSGKTHLMQSAIS 163

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF---NDTQ 125
           +  +      + +     + ++   R                + +EDI++         +
Sbjct: 164 VLRESGGKILYVSSDLFTEHLVSAIRSGEMQKFRSFYRNIDALFIEDIEVFSGKSATQEE 223

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+H     +++++   P         L SR +    + I     + L   +++ 
Sbjct: 224 FFHTFNSLHSEGKLIVVSSSYAPADLVAVEDRLISRFEWGVAIPIHPLVQEGLRSFLMRQ 283

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
                I I +    +++  +  ++      ++ +
Sbjct: 284 VERLSIRIQETALDFLIYALSSNVKTLLHALNLL 317


>gi|271961610|ref|YP_003335806.1| DNA replication initiation ATPase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270504785|gb|ACZ83063.1| ATPase involved in DNA replication initiation- like protein
           [Streptosporangium roseum DSM 43021]
          Length = 582

 Score = 96.4 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW----SDK 87
               + +  ++ S+      A   +   P+     + + G SG GK+ L +         
Sbjct: 242 NPKYTFETFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAQSL 301

Query: 88  SRSTRF---------SNIAKSLDSILIDTRKP-------VLLEDIDLLDFND---TQLFH 128
               R          ++   S+     D  +        +L++DI  L+  +    + FH
Sbjct: 302 YDGARVRYVSSEEFTNDFINSIRDHKADGFRSRYRAVDILLVDDIQFLEGKEQTQEEFFH 361

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 362 TFNTLHNANKQIVISSDRAPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAI 420

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              +    ++  YI  R+  ++   E  + ++   A      +   L   VLK+ 
Sbjct: 421 QEGLAAPPEVLEYIASRISTNIRELEGALIRVTAFASLNRQSVDLQLTEVVLKDL 475


>gi|292490171|ref|YP_003525610.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           halophilus Nc4]
 gi|291578766|gb|ADE13223.1| chromosomal replication initiator protein DnaA [Nitrosococcus
           halophilus Nc4]
          Length = 450

 Score = 96.4 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 81/232 (34%), Gaps = 28/232 (12%)

Query: 38  ISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------- 83
            + ++ +   +       + ++ ++ P      + + G  G GK+ L +           
Sbjct: 119 YTFNNFVEGKSNQLPRAASYQVAEN-PGSAYNPLFIYGGVGLGKTHLMHAVGNYIRTRSP 177

Query: 84  -------WSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHII 130
                   S++  +     +  +  +      + V   L++DI      +    + F+  
Sbjct: 178 DARVAYLHSEQFVAEMIKALQLNAINEFKARYRSVDVLLIDDIQFFAGKERSQEEFFYTF 237

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++ +    +++T   FP         L SR      V +  P+ +    +++       
Sbjct: 238 NTLLEVQHQIILTCDRFPKEVNGLEERLKSRFGWGLTVAVEPPELETRVAILMNKANIES 297

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + +   +A ++ + +  ++   E  + ++   +      IT  L  E LK+ 
Sbjct: 298 VALSDDVAFFLGRLIYSNVRELEGALRRVIAYSRFTRRPITMELTREALKDL 349


>gi|23335939|ref|ZP_00121170.1| COG0593: ATPase involved in DNA replication initiation
           [Bifidobacterium longum DJO10A]
          Length = 506

 Score = 96.4 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 76/222 (34%), Gaps = 32/222 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKS 88
            + D  +   +   A  +  +           + + G SG GK+ L N         D  
Sbjct: 161 FTFDSFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPG 220

Query: 89  RSTRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL--- 126
              R+    +  +  +   + P                   +L++DI  L   +  L   
Sbjct: 221 LKVRYVTSEEFTNEFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQF 280

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++HQ +  +++ +   P +       L SR ++   V +  PD +    ++  + 
Sbjct: 281 FHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIA 340

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRG 227
           +     I   +   I +R   ++   E  + ++    +LS  
Sbjct: 341 SMNGSKIPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQ 382


>gi|78184461|ref|YP_376896.1| chromosomal replication initiation protein [Synechococcus sp.
           CC9902]
 gi|123729943|sp|Q3AYH5|DNAA_SYNS9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78168755|gb|ABB25852.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           CC9902]
          Length = 462

 Score = 96.0 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 86/262 (32%), Gaps = 32/262 (12%)

Query: 12  VPDKQKNDQPKNKEEQ---LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           V + ++   P     Q   L  +        R   +V      A     +    P R   
Sbjct: 101 VSEPRRESAPARPSGQRRYLP-ALNPRYVFGR--FVVGQNSRMAHAAALAVAEAPGREFN 157

Query: 67  -VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT------------- 107
            + + G  G GK+ L              +       ++  + LI               
Sbjct: 158 PLFICGGVGLGKTHLMQAIGHYRLEIDPGARVAYVSTETFTNDLIQAIRKDGMQAFRDRY 217

Query: 108 --RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                +L++DI  ++  +    + FH  N++H+    +++ +   P         L SR 
Sbjct: 218 RAADLILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRF 277

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   +  I  PD +    ++ K     ++ + + L  YI  R   ++   E  + +    
Sbjct: 278 QMGLIADIQSPDLETRMAILQKKAEQERMALPRDLIQYIAGRFTSNIRELEGALTRAVAF 337

Query: 223 ALSRGMGITRSLAAEVLKETQQ 244
           A   G+ +T    A +L  T Q
Sbjct: 338 ASITGLPMTVESVAPMLDPTGQ 359


>gi|288817322|ref|YP_003431669.1| chromosomal replication initiation protein [Hydrogenobacter
           thermophilus TK-6]
 gi|288786721|dbj|BAI68468.1| chromosomal replication initiation protein [Hydrogenobacter
           thermophilus TK-6]
 gi|308750929|gb|ADO44412.1| chromosomal replication initiator protein DnaA [Hydrogenobacter
           thermophilus TK-6]
          Length = 399

 Score = 96.0 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 27/227 (11%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPS 73
           ++   + K E    +       S D+ +V  A E   ++      +P      + + G  
Sbjct: 64  RSAGEREKNEAYPSNLI--EKYSFDNFVVGKANELVYKVCIEVAEYPGSSFNPLFIYGKV 121

Query: 74  GSGKSCLANIWSDKSR----STRFSNIAKSLDSILI--------------DTRKPVLLED 115
           G GK+ L +   +++R       +S I    D ++                +   +LL+D
Sbjct: 122 GLGKTHLLHAIGNRARDGGYKVIYSPITDFSDEMIAYLKKGQIEAFRNKYSSVDVLLLDD 181

Query: 116 IDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +  L   +    +LF +  SI+  D  +++ +   P         L SR ++  V++I L
Sbjct: 182 VQFLSGKERTQIELFRVFESIYSKDKQMVLVSDRHPKDLKDISDRLISRFESGLVIEIGL 241

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            DD+    +I +      + +D+K+  +I +    ++   E  +  +
Sbjct: 242 -DDETKLSIIKQKLILYGMPLDQKVIDHIFENTGYNVREIEGAIKTL 287


>gi|257455164|ref|ZP_05620402.1| chromosomal replication initiator protein DnaA [Enhydrobacter
           aerosaccus SK60]
 gi|257447497|gb|EEV22502.1| chromosomal replication initiator protein DnaA [Enhydrobacter
           aerosaccus SK60]
          Length = 446

 Score = 96.0 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 90/243 (37%), Gaps = 26/243 (10%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILVGPSGSGKSCL 80
           E+Q  F +      + D  +   + + A  +     +      +  + + G +G GK+ L
Sbjct: 104 EQQRSFQY-IDPHFTFDQFVTAKSNQIAYSICRETANNLGQSKNNPLFIYGATGLGKTHL 162

Query: 81  ANIWSDK-----------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFN 122
               + +           +     + +  SL +  ID           ++++DI ++   
Sbjct: 163 MQAIAHEILKQGKSFYYFTSDKFVNQLVHSLRTQKIDEFKDKIKKADLLIIDDIHVIAGK 222

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
                Q   ++N     +  +++ +   P +       L SRL     V +  P+ +   
Sbjct: 223 QKSSEQFLLLLNDFMSKNKQVILASDKHPSALTDFDERLKSRLAWGVAVALEPPELETRI 282

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +++ K    +++ + K+ A +I Q +  ++   E  ++K+  ++      I   L    L
Sbjct: 283 QILQKKSKAQEVILPKECAIFIAQHIIANVRELEGALNKVLAISRLLNQPIHLELVQMAL 342

Query: 240 KET 242
           K+ 
Sbjct: 343 KDL 345


>gi|81251053|gb|ABB69861.1| DNA replication initiator protein [Nitrosospira sp. KAN8]
          Length = 476

 Score = 96.0 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85
               + +  +   A + A      +   P        + G  G GK+ L           
Sbjct: 142 NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIYGGVGLGKTHLIQAIGNFVVEH 201

Query: 86  DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
           + +   R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 202 NPAAKVRYIHSEQYVSDVVGAYQHKAFDEFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFY 261

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T  ++P         L SR      V +  P+ +    +++K    
Sbjct: 262 AFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 321

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I +D+ +A +I + +  ++   E  + ++   +   G  ++  LA E LK+ 
Sbjct: 322 EDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGHALSLDLAREALKDL 375


>gi|224437107|ref|ZP_03658088.1| chromosomal replication initiation protein [Helicobacter cinaedi
           CCUG 18818]
 gi|313143577|ref|ZP_07805770.1| chromosomal replication initiator protein dnaA [Helicobacter
           cinaedi CCUG 18818]
 gi|313128608|gb|EFR46225.1| chromosomal replication initiator protein dnaA [Helicobacter
           cinaedi CCUG 18818]
          Length = 443

 Score = 96.0 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 91/238 (38%), Gaps = 26/238 (10%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
                  + ++ +V  + E A  +   +    +     V+  G SG GK+ L +   +  
Sbjct: 103 LSLNPFYTFENFVVGKSNEHAHTIAKVVARQQALAYNPVLFYGKSGLGKTHLLHAIGNVV 162

Query: 89  RSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLF 127
           +    + +  + + +L D                      +L++D+  L   +    +L 
Sbjct: 163 KEQNKNVLYTTAEELLNDFISKIRRGTMDSFREKYRKCDYLLIDDVQFLGNREGVQEELL 222

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N+++     ++MT+   P         L SR +   + +I+ P+ +    +I     
Sbjct: 223 NTFNALYSTQKQIVMTSDKPPKEIKGLEDRLRSRFEGGVMAEITNPELETKISIIELKCQ 282

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLKETQQ 244
             +I  DK++  YI   +  ++   E ++  ++ +++LS        +A  VLK  Q 
Sbjct: 283 INRINFDKEVIDYIASNIYGNIRQIEGILSTINTHMSLSPEANA-LKVAKNVLKNYQN 339


>gi|332654819|ref|ZP_08420561.1| ATPase involved in DNA replication initiation [Ruminococcaceae
           bacterium D16]
 gi|332516162|gb|EGJ45770.1| ATPase involved in DNA replication initiation [Ruminococcaceae
           bacterium D16]
          Length = 427

 Score = 96.0 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 90/244 (36%), Gaps = 29/244 (11%)

Query: 3   LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW 62
           L   +    V  + + DQ +   ++  F FP     + +  +V S+ + A     +    
Sbjct: 58  LFSAEMDVVVLTEGELDQYQQPAQKNDF-FPGTEEYTFERFVVGSSNKFAHAAARAVADN 116

Query: 63  PSRV---VILVGPSGSGKSCLANIWS-----------------DKSRSTRFSNIAKSLDS 102
           P +    + + G SG GK+ L    +                 D   +     I +  ++
Sbjct: 117 PGQSYNPLFIYGESGLGKTHLLYAIAHTIHKNHPEYKVVYIKGDTFTNELIQAIREGRNA 176

Query: 103 ILID---TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
              +        L++D+  +   D    ++FH  N++++    ++ T+   P    + L 
Sbjct: 177 EFREKYRGADVFLMDDVQFIAGRDSTQEEMFHTFNTLYELKKQIVFTSDRPPKEM-LRLE 235

Query: 157 D-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
           D L +R +   +  I  PD +    +I        + + + L   I + +  ++   E  
Sbjct: 236 DRLKTRFEWGLLADIQPPDYETRMAIIKNKAVRMGVELPEFLLQLIAENITANVRQIEGT 295

Query: 216 VDKM 219
           V+K+
Sbjct: 296 VNKI 299


>gi|81251049|gb|ABB69858.1| DNA replication initiator protein [Nitrosospira sp. HBN8222A]
          Length = 476

 Score = 96.0 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85
               + +  +   A + A      +   P        + G  G GK+ L           
Sbjct: 142 NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIYGGVGLGKTHLIQAIGNFVVEH 201

Query: 86  DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128
           + S   R+ +  + +  ++                +   +L++DI           + F+
Sbjct: 202 NPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFY 261

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++ +    +++T  ++P         L SR      V +  P+ +    +++K    
Sbjct: 262 AFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 321

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I +D+ +A +I + +  ++   E  + ++   +   G  ++  LA E LK+ 
Sbjct: 322 EDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGHALSLELAREALKDL 375


>gi|119964126|ref|YP_945834.1| chromosomal replication initiator protein DnaA [Arthrobacter
           aurescens TC1]
 gi|119950985|gb|ABM09896.1| chromosomal replication initiator protein DnaA [Arthrobacter
           aurescens TC1]
          Length = 472

 Score = 96.0 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ S+      A   +   P+     + + G SG GK+ L +     +R  
Sbjct: 132 NPKYIFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYARRL 191

Query: 91  -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128
                 R+ N  +  +  +   R                +L++DI  L   D    + FH
Sbjct: 192 YSGIRVRYVNSEEFTNDFINSIRDDEGTSFKTTYRNVDVLLIDDIQFLAGKDRTQEEFFH 251

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++T+   P         + SR +   +  I  P+ +    ++ K    
Sbjct: 252 TFNALHNANKQVVITSDQPPKMLAGFEDRMTSRFEWGLLTDIQPPELETRIAILRKKGLS 311

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +        YI  ++  ++   E  + ++   A      +  +LA  VLK+ 
Sbjct: 312 EGLSAPDDALEYIASKISSNIRELEGALIRVTAFASLNRQPVDVALAEMVLKDL 365


>gi|189184480|ref|YP_001938265.1| chromosomal replication initiation protein [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181251|dbj|BAG41031.1| chromosomal replication initiator protein DnaA [Orientia
           tsutsugamushi str. Ikeda]
          Length = 470

 Score = 96.0 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 28/240 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI--WSDK 87
               + D+ +V    E A     +    P     S  + L G  G GK+ L +   W  +
Sbjct: 134 DPRFTFDNFVVGRPNELAYAAATTVAESPTAVAKSNPLFLYGGVGLGKTHLMHAIAWHIQ 193

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFND---TQL 126
           + S++   I  S +  +                    +   ++++DI  +   D    + 
Sbjct: 194 NSSSKRKVIYMSAEKFMYQFVQSLRNKDVMSFKEQFRSVDVLMIDDIQFICGKDSTQEEF 253

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++      ++++    P         + SRL    V  +     +    ++    
Sbjct: 254 FHTFNALIDNKRQMVISCDRSPSDLDNIEERIKSRLGWGLVADVHSTTYELRLGILQSKV 313

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
                 +  K+  ++  ++  ++   E  ++K+   +   G  IT     E+L++  + +
Sbjct: 314 EQLATAVPLKVLEFLAAKITSNVRELEGALNKVIAHSTLVGYEITIENTQEILRDLLRSN 373


>gi|148283998|ref|YP_001248088.1| chromosomal replication initiation protein [Orientia tsutsugamushi
           str. Boryong]
 gi|146739437|emb|CAM79067.1| chromosomal replication initiator protein [Orientia tsutsugamushi
           str. Boryong]
          Length = 469

 Score = 96.0 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 28/240 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI--WSDK 87
               + D+ +V    E A     +    P     S  + L G  G GK+ L +   W  +
Sbjct: 133 DPRFTFDNFVVGRPNELAYAAATTVAESPTAVAKSNPLFLYGGVGLGKTHLMHAIAWHIQ 192

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFND---TQL 126
           + S++   I  S +  +                    +   ++++DI  +   D    + 
Sbjct: 193 NSSSKRKVIYMSAEKFMYQFVQSLRNKDVMSFKEQFRSVDVLMIDDIQFICGKDSTQEEF 252

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++      ++++    P         + SRL    V  +     +    ++    
Sbjct: 253 FHTFNALIDNKRQMVISCDRSPSDLDNIEERIKSRLGWGLVADVHSTTYELRLGILQSKV 312

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
                 +  K+  ++  ++  ++   E  ++K+   +   G  IT     E+L++  + +
Sbjct: 313 EQLATAVPLKVLEFLAAKITSNVRELEGALNKVIAHSTLVGYEITIENTQEILRDLLRSN 372


>gi|293602695|ref|ZP_06685136.1| DNA-directed DNA replication initiator protein [Achromobacter
           piechaudii ATCC 43553]
 gi|292818886|gb|EFF77926.1| DNA-directed DNA replication initiator protein [Achromobacter
           piechaudii ATCC 43553]
          Length = 485

 Score = 96.0 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 27/232 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89
           ++ ++ +   A + A          P      + L G  G GK+ L +       +  + 
Sbjct: 153 LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 212

Query: 90  STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136
                  A    S ++   +    +D       +DLL  +D Q F   N   +       
Sbjct: 213 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 272

Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                   +++T+ T+P         L SR  +   V I  P+ +    ++++      +
Sbjct: 273 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 332

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242
            + +++A +I + +  ++   E  + K+   A   G  + T  +  E LK+ 
Sbjct: 333 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDL 384


>gi|326802615|ref|YP_004320433.1| chromosomal replication initiator protein DnaA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650687|gb|AEA00870.1| chromosomal replication initiator protein DnaA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 450

 Score = 96.0 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 83/239 (34%), Gaps = 28/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIWSDKS--- 88
               + ++ +V    + A     +    P R    +   G  G GK+ L      +    
Sbjct: 115 NPKYTFENFVVGEGNKMAHAAALAVAEGPGRDYNPLFFYGGVGLGKTHLMQAIGHEVLRT 174

Query: 89  --RSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLD---FNDTQLFH 128
              +      +++  +  I+  +                +L++DI  +        + FH
Sbjct: 175 HPDAIVKYVTSETFTNDFIEAIRTNTMPDFHQAYRHVDMLLVDDIQFIGNKQSTQEEFFH 234

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N+++  +  +++T+          L D L SR K      I+ PD +    ++     
Sbjct: 235 TFNALYNNNKHIVLTSDRDASQIP-ELEDRLVSRFKQGLSTDITPPDLETRIAILRNKAK 293

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              I I  +  +YI  +++ ++   E  +  +   A+     ++  +AA  L   +  +
Sbjct: 294 VNGIDIPDETLSYIAGQIDTNIRELEGALTSVQAYAVMNQEELSPDVAARALSNYRDAN 352


>gi|148241930|ref|YP_001227087.1| chromosomal replication initiation protein [Synechococcus sp.
           RCC307]
 gi|147850240|emb|CAK27734.1| Chromosomal replication initiator protein dnaA [Synechococcus sp.
           RCC307]
          Length = 461

 Score = 95.6 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 26/231 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               +    +V      A     +    P R    + L G  G GK+ L           
Sbjct: 124 NPRYTFQRFVVGPNSRMAHAAALAVAESPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEI 183

Query: 87  --KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQLFH 128
              SR    S    + D IL                   ++++DI  ++  +    + FH
Sbjct: 184 DPDSRVFYVSTETFTNDLILAIRKDGMQAFRDRYRAADLIMVDDIQFIEGKEYTQEEFFH 243

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++ +   P         L SR     +  I  PD +    ++ K    
Sbjct: 244 TFNALHEAGRQIVIASDRPPSQIQRLQERLISRFSMGLIADIQAPDLETRMAILHKKAEQ 303

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            Q+ + + L  YI  R   ++   E  + +    A   G+ +T    A +L
Sbjct: 304 EQMRLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITGLPMTVDAVAPLL 354


>gi|331001504|ref|ZP_08325122.1| replication initiator protein DnaA [Parasutterella
           excrementihominis YIT 11859]
 gi|329568233|gb|EGG50050.1| replication initiator protein DnaA [Parasutterella
           excrementihominis YIT 11859]
          Length = 457

 Score = 95.6 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 31/235 (13%)

Query: 37  GISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87
           G++ D  ++ +A   A     L+  +P      + + G  G GK+ L +    K      
Sbjct: 120 GLTFDTFVIGNANRVARSSAMLVAEFPGERCNPLFIYGGVGLGKTHLMHAVGRKILEDNP 179

Query: 88  -------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQ 125
                              S   R+S+               +L++D+  L        +
Sbjct: 180 NTNLLCISANRFINEVVSLSAGGRYSDEKIQKFDNKYRNLDALLIDDVQFLCKRGGTQQR 239

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           LF+I  ++   +  +++T  T+          L SR  A   V I   + +    ++++ 
Sbjct: 240 LFNIFEALLPKNKQIILTCDTYARQLSDFDERLISRFGAGLSVSIEPAEFELRAAILLQK 299

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++A  I  R+  ++   E  ++ +   A      IT  LA E L+
Sbjct: 300 AKQQGVKLPLEVAYLIATRLNTNIRELEGALNSVIMRAEVFKKPITEELAKEALQ 354


>gi|303256370|ref|ZP_07342384.1| DNA replication initiator protein [Burkholderiales bacterium
           1_1_47]
 gi|302859861|gb|EFL82938.1| DNA replication initiator protein [Burkholderiales bacterium
           1_1_47]
          Length = 457

 Score = 95.6 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 31/235 (13%)

Query: 37  GISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87
           G++ D  ++ +A   A     L+  +P      + + G  G GK+ L +    K      
Sbjct: 120 GLTFDTFVIGNANRVARSSAMLVAEFPGERCNPLFIYGGVGLGKTHLMHAVGRKILEDNP 179

Query: 88  -------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQ 125
                              S   R+S+               +L++D+  L        +
Sbjct: 180 NTNLLCISANRFINEVVSLSAGGRYSDEKIQKFDNKYRNLDALLIDDVQFLCKRGGTQQR 239

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           LF+I  ++   +  +++T  T+          L SR  A   V I   + +    ++++ 
Sbjct: 240 LFNIFEALLPKNKQIILTCDTYARQLSDFDERLISRFGAGLSVSIEPAEFELRAAILLQK 299

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + + +  ++A  I  R+  ++   E  ++ +   A      IT  LA E L+
Sbjct: 300 AKQQGVKLPLEVAYLIATRLNTNIRELEGALNSVIMRAEVFKKPITEELAKEALQ 354


>gi|331693900|ref|YP_004330139.1| Chromosomal replication initiator protein dnaA [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948589|gb|AEA22286.1| Chromosomal replication initiator protein dnaA [Pseudonocardia
           dioxanivorans CB1190]
          Length = 555

 Score = 95.6 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 80/234 (34%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ ++   +     +    P      + + G SG GK+ L +     ++  
Sbjct: 216 NEKYTFDTFVIGASNRFSHAAAVAVAEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRL 275

Query: 92  --RFSNIAKSLDSILIDTRKPVLLED---------------------IDLLDFNDTQLFH 128
                    S +    D    +  +                      ++  +    + FH
Sbjct: 276 FPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDVDVLLVDDVQFLEGKEGTQEEFFH 335

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H  +  +++++   P         + +R +   +  I  P+ +    ++ K  A 
Sbjct: 336 TFNTLHNSNKQIVVSSDRPPKRLETLEDRMRTRFEWGLITDIQPPELETRIAILRKKAAQ 395

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ +   +  +I  R+ER++   E  + ++   A      +   LA  VL++ 
Sbjct: 396 DRLAVPGDVLEFIAARIERNIRELEGALIRVTAFASLNRQPVDTQLAEIVLRDL 449


>gi|124265194|ref|YP_001019198.1| chromosomal replication initiation protein [Methylibium
           petroleiphilum PM1]
 gi|167016902|sp|A2SBM4|DNAA_METPP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|124257969|gb|ABM92963.1| chromosomal replication initiator protein [Methylibium
           petroleiphilum PM1]
          Length = 467

 Score = 95.6 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI-----WSD 86
              ++ D L+   A + A          P      + + G  G GK+ L +        D
Sbjct: 133 NTALTFDTLVPGRANQMARTAALHVAGAPGVMYNPLFIYGGVGLGKTHLIHAVGNALLRD 192

Query: 87  KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128
           K  +      A+   + ++                    +L++D+      +    + F+
Sbjct: 193 KPDARILYLHAEQFITDVVKNYQRKTFDELKAKYHSLDLLLIDDVQFFAGKERTQEEFFN 252

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + ++MT+ T+P         L SR  A   V I  P+ +    +++K    
Sbjct: 253 AFEALLAKRAHIIMTSDTYPKGLADIDERLTSRFDAGLTVAIEPPELEMRVAILMKKSDV 312

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + + +A ++ + +  ++   E  + K+   A      I  +LA E LK+ 
Sbjct: 313 EGTPMPEDVAFFVAKNVRANVRELEGALRKVLAYARFSQKDINIALAREALKDL 366


>gi|50083298|ref|YP_044808.1| chromosomal replication initiation protein [Acinetobacter sp. ADP1]
 gi|61212579|sp|Q6FG21|DNAA_ACIAD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|49529274|emb|CAG66986.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Acinetobacter sp.
           ADP1]
          Length = 465

 Score = 95.6 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 87/235 (37%), Gaps = 27/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VILVGPSGSGKSCLANI-----WS 85
               +    +   + + A             S+   + L GP+G GK+ L          
Sbjct: 130 NPLFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFLYGPTGLGKTHLMQAVGNALLQ 189

Query: 86  DKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---F 127
            K  +      A+S     + +                  +L++DI LL   +  L   F
Sbjct: 190 AKPNARVMYMTAESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++      +++T+  +P       P L SR      V +  PD +   ++++K   
Sbjct: 250 YTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLKKAE 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  + + +  A +I Q++  ++   E  ++K+  +A  +G  I   +  E LK+ 
Sbjct: 310 NSGVDLPRNCALFIAQQVVANVRELEGALNKVVAIARFKGSQIDLDVVRESLKDV 364


>gi|322390524|ref|ZP_08064042.1| DNA-directed DNA replication initiator protein [Streptococcus
           parasanguinis ATCC 903]
 gi|321142798|gb|EFX38258.1| DNA-directed DNA replication initiator protein [Streptococcus
           parasanguinis ATCC 903]
          Length = 452

 Score = 95.6 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 84/244 (34%), Gaps = 30/244 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
                    + D+ +           A+ + ++  +     + + G  G GK+ L N   
Sbjct: 110 IDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAIG 168

Query: 86  DK-----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF---- 121
           ++       +      A++  +  ++               +   +L++DI  L      
Sbjct: 169 NQILENIPNARVKYVPAETFINEFLEHLRLGEMKTFKNTYRSLDLLLIDDIQSLGGKKVT 228

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + F+  N++H  +  +++T+   P         L +R K      I+ PD +    +
Sbjct: 229 TQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDFETRIAI 288

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLK 240
           +     D           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++
Sbjct: 289 LRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMAKVKKLKEITIDVAAEAIR 348

Query: 241 ETQQ 244
             + 
Sbjct: 349 ARKN 352


>gi|255320702|ref|ZP_05361879.1| chromosomal replication initiator protein DnaA [Acinetobacter
           radioresistens SK82]
 gi|262380667|ref|ZP_06073820.1| chromosomal replication initiator protein DnaA [Acinetobacter
           radioresistens SH164]
 gi|255302318|gb|EET81558.1| chromosomal replication initiator protein DnaA [Acinetobacter
           radioresistens SK82]
 gi|262297615|gb|EEY85531.1| chromosomal replication initiator protein DnaA [Acinetobacter
           radioresistens SH164]
          Length = 460

 Score = 95.6 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 97/257 (37%), Gaps = 31/257 (12%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VI 68
           P K+K  +P  + ++   +       +    +   + + A             S+   + 
Sbjct: 107 PKKEKEAEPAKQNKKRLLN----PLFTFALFVEGRSNQMAAETCRKVLTQLGASQHNPLF 162

Query: 69  LVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR--------------- 108
           L GP+G GK+ L           K  +      A+S     + +                
Sbjct: 163 LYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTAESFVQDFVSSLQRGKVEEFKKNCRSL 222

Query: 109 KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI LL   +  L   F+  N++      +++T+  +P       P L SR    
Sbjct: 223 DLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWG 282

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             V +  PD +   ++++K     +I + +  A +I Q++  ++   E  ++K+  ++  
Sbjct: 283 LSVGVEPPDIETRIEILLKKAESNEIDLPRNCALFIAQQVVANVRELEGALNKVVAISRF 342

Query: 226 RGMGITRSLAAEVLKET 242
           +G  I   +  E LK+ 
Sbjct: 343 KGTAIDLDVVRESLKDV 359


>gi|152963973|ref|YP_001359757.1| chromosomal replication initiator protein DnaA [Kineococcus
           radiotolerans SRS30216]
 gi|189044597|sp|A6W3V4|DNAA_KINRD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|151358490|gb|ABS01493.1| chromosomal replication initiator protein DnaA [Kineococcus
           radiotolerans SRS30216]
          Length = 518

 Score = 95.6 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-- 89
                 +  ++ ++      A   +   P+     + + G SG GK+ L +     ++  
Sbjct: 179 NPKYIFETFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYAQNL 238

Query: 90  ----STRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLD---FNDTQLFH 128
                 R+ N  +  +  +   R                +L++DI  L        + FH
Sbjct: 239 YPGVQVRYVNSEEFTNDFINSIRDDKAQAFQRRHRDVDVLLIDDIQFLSNKVQTQEEFFH 298

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     +++T+   P         + SR +   +  +  PD +    ++ K    
Sbjct: 299 TFNTLHNASKQVVITSDLPPKQLSGFEERMRSRFEWGLITDVQPPDLETRIAILRKKAIG 358

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ +   +  YI  ++  ++   E  + ++   A      +   LA  VL++ 
Sbjct: 359 ERLEVPDDVNEYIASKISSNIRELEGALIRVTAFASLNRQPVDMQLAEIVLRDL 412


>gi|330822654|ref|YP_004385957.1| chromosomal replication initiator protein dnaA [Alicycliphilus
           denitrificans K601]
 gi|329308026|gb|AEB82441.1| Chromosomal replication initiator protein dnaA [Alicycliphilus
           denitrificans K601]
          Length = 473

 Score = 95.6 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 89/239 (37%), Gaps = 26/239 (10%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI--- 83
           F       ++ + L+  +A   A          P  +   + + G  G GK+ L +    
Sbjct: 134 FRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVGN 193

Query: 84  --WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND----------- 123
              +D+  +      A+   S ++ + +    +D       +DLL  +D           
Sbjct: 194 KLLADRPDAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQFFANKDRTQ 253

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+   ++    S ++MT+ T+P         L SR  +   V I  P+ +    +++
Sbjct: 254 EEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAILI 313

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                    + +++A ++ + +  ++   E  + K+   +      ++  LA E L++ 
Sbjct: 314 NKARAEHAEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 372


>gi|262374719|ref|ZP_06067991.1| chromosomal replication initiator protein DnaA [Acinetobacter junii
           SH205]
 gi|262310375|gb|EEY91467.1| chromosomal replication initiator protein DnaA [Acinetobacter junii
           SH205]
          Length = 464

 Score = 95.6 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 39/249 (15%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID-------SWPSWPSRVVILVGPSGSG 76
           K+ QL          +    +   + + A            +    P   + L GP+G G
Sbjct: 124 KKRQL------NPLFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNP---LFLYGPTGLG 174

Query: 77  KSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDI 116
           K+ L           K  +      ++S     + +                  +L++DI
Sbjct: 175 KTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDI 234

Query: 117 DLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            LL   +  L   F+  N++      +++T+  +P       P L SR      V +  P
Sbjct: 235 HLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPP 294

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D +   ++++K   +  + + +  A +I Q++  ++   E  ++K+  ++  +G  I   
Sbjct: 295 DIETRIEILLKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGTSIDLD 354

Query: 234 LAAEVLKET 242
           +  E LK+ 
Sbjct: 355 VVRESLKDV 363


>gi|195952381|ref|YP_002120671.1| chromosomal replication initiator protein DnaA [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195931993|gb|ACG56693.1| chromosomal replication initiator protein DnaA [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 444

 Score = 95.6 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 25/229 (10%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVI 68
            P+ +    P + + +  F        + D+ +V    E A R    + +  +     + 
Sbjct: 90  YPNAETKLNPSDVKNKTAFKEGISSKYTFDNFIVGKQNEVAYRASLEVATDENSIYNPLF 149

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID------------------TRKP 110
           + G  GSGK+ L     +++ S   S I  S++    +                      
Sbjct: 150 IYGKVGSGKTHLLQAIGNRAYSLGKSVIYTSMNDFTEEMVYYLKAGNIISFREKYKGVDI 209

Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L   +    +LF+I N + QY+  ++  +   P         L SR +   +
Sbjct: 210 LLIDDIQFLSGKERTQMELFNIFNYLFQYNKHIVFASDKHPRDIKDISERLVSRFEGGLL 269

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
           V+ S+ DD     +I +      + +D++L +YI      +    E LV
Sbjct: 270 VETSI-DDQIKLSIIKQKIQIYGLNVDERLISYIKDNTTNNAREIEGLV 317


>gi|167643974|ref|YP_001681637.1| chromosomal replication initiation protein [Caulobacter sp. K31]
 gi|189044631|sp|B0T135|DNAA_CAUSK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|167346404|gb|ABZ69139.1| chromosomal replication initiator protein DnaA [Caulobacter sp.
           K31]
          Length = 487

 Score = 95.6 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 84/261 (32%), Gaps = 37/261 (14%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68
           VP     +  K    Q           + D  +   A E A  +     SW       V+
Sbjct: 129 VPALAPTNGSKPSPVQ-----GLQERFTFDTFVPGPANEFAHAVARRVASWADGHFNPVL 183

Query: 69  LVGPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
             GP G GK+ L N   W    ++     +  + +  L                  +   
Sbjct: 184 FHGPYGFGKTHLLNALAWEAMRQAPTKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRGA 243

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             ++++D+  +     +  +LFH + ++ +    ++ ++   P +       L S L A 
Sbjct: 244 DLLIIDDVHFIAGKQSSQEELFHTLTALVEDGRRVVFSSDRAPAAMTEMDARLRSHLSAG 303

Query: 166 TVVKISLPDDDFLEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            V  +   D      ++ +      RQ      +  ++  ++  R   S+   E  ++ +
Sbjct: 304 LVCGLEPADRALRIGILERKLQALSRQHGFEPTLRAEVLNFLADRFTDSVRELEGALNTL 363

Query: 220 DNLALSRGMGITRSLAAEVLK 240
              A      +T      +L+
Sbjct: 364 SARAGEGVSRLTLEEVQAILR 384


>gi|218134376|ref|ZP_03463180.1| hypothetical protein BACPEC_02270 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989761|gb|EEC55772.1| hypothetical protein BACPEC_02270 [Bacteroides pectinophilus ATCC
           43243]
          Length = 342

 Score = 95.6 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 72/205 (35%), Gaps = 25/205 (12%)

Query: 67  VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT-------------- 107
           + + G +G GK+ L    +                +++  + LI++              
Sbjct: 39  LFIYGGAGLGKTHLMQAIAHFIMQNNPDLKVLYVTSETFTNELIESLKNQKMTNQEFRNK 98

Query: 108 ---RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                 +L++DI  +   +    + FH  N+++  +  +++++   P         L +R
Sbjct: 99  YRNIDVLLIDDIQFIIGKESTQEEFFHTFNALYDANKQIVISSDKPPKEMETLTERLRTR 158

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            +      I +P  +    ++ K        I   +  Y+   ++ S+   E  + K+  
Sbjct: 159 FEMGLTADIQIPTYETKMAILNKKSEAEGYNIPDDVKDYVATHIKSSIRELEGALTKLVA 218

Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246
            +      +T   A + LK+    +
Sbjct: 219 FSTLSHQPLTVEFAEDTLKDLISPE 243


>gi|224531666|ref|ZP_03672298.1| chromosomal replication initiator protein DnaA [Borrelia valaisiana
           VS116]
 gi|224511131|gb|EEF81537.1| chromosomal replication initiator protein DnaA [Borrelia valaisiana
           VS116]
          Length = 486

 Score = 95.6 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91
             + ++ ++    + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 146 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 205

Query: 92  ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130
                   A++  +  +++ K                +L++DI  L   +    +LFH  
Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  L+ T    P         L +R      V IS P+ +    +I K   +  
Sbjct: 266 NALYEDNKQLVFTCDRPPSELTNFTDRLKNRFTRGLNVDISKPNFELRVAIIEKKAEEDG 325

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + Q++  ++   E  V K+
Sbjct: 326 IKVPKNILNLVAQKVTTNVRDLEAAVTKL 354


>gi|94495384|ref|ZP_01301964.1| chromosomal replication initiator protein DnaA [Sphingomonas sp.
           SKA58]
 gi|94424772|gb|EAT09793.1| chromosomal replication initiator protein DnaA [Sphingomonas sp.
           SKA58]
          Length = 466

 Score = 95.2 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 27/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
                 DD +V      A     +           + + G +G GK+ L +  +    + 
Sbjct: 131 QPRHRLDDFVVGDTNRLAWSAAQAMAGEAQPRFTPLFIHGGTGQGKTHLLHGIAAAFSAH 190

Query: 92  RFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLDF---NDTQLFH 128
                   + +                      +   + +L++DI  +        +  H
Sbjct: 191 SPKAPVLYMSAERFMMEFVNAMRANETMAFKARLRAARLLLIDDIQFIAGKGSTQEEFLH 250

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            IN +    + +++TA   P         + SRL    V  I   D D    ++    A 
Sbjct: 251 TINDLIDSGARIVVTADRAPQMLESIDARILSRLAGGLVADIRPADLDLRLAILESKRAL 310

Query: 189 RQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              + +   +  ++ + +  ++   E   +K+       G  +    A ++L +  + +
Sbjct: 311 AGDMIVPDMVIDFLARSIRSNVRELEGAFNKLVAYGQLTGRAVDLDFAQQMLADAVRAN 369


>gi|329118144|ref|ZP_08246856.1| DNA-directed DNA replication initiator protein DnaA [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465804|gb|EGF12077.1| DNA-directed DNA replication initiator protein DnaA [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 508

 Score = 95.2 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 76/230 (33%), Gaps = 26/230 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94
            + + L+       A     S    P +      L G +G GK+ L     ++    R  
Sbjct: 177 YTFETLVEGKGNRMAAAAARSIAENPGKSYNPFFLYGSTGLGKTHLVQAVGNELLKNRPD 236

Query: 95  NIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131
              + + S                            ++++DI  +   D    + F++ N
Sbjct: 237 AKVRYMHSDEYIRSFMKAVRHNGYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYN 296

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
             H     L++T    P         L SR      +++  P+ +    ++ K      +
Sbjct: 297 HFHNEKKQLILTCDVLPAQIEGMDDRLKSRFSWGLTLELEPPEFEMRVAILQKKAEASGV 356

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            + +  A +I + +  ++   E    +++  +  +   I   LA E L++
Sbjct: 357 TLCEDAAFFIAKYIRSNVRELEGAFKRVEASSRFQQKPIDIDLATEALQD 406


>gi|84684521|ref|ZP_01012422.1| chromosomal replication initiation protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667500|gb|EAQ13969.1| chromosomal replication initiation protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 455

 Score = 95.2 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 82/249 (32%), Gaps = 34/249 (13%)

Query: 31  SFPRCL---GISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIW 84
             P        + D  +V    E A                 + L G  G GK+ L +  
Sbjct: 109 DLPGAPLDKRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAI 168

Query: 85  SDK--SRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND- 123
           + +   R  +   +  S +  +    +                   ++++D+  +   D 
Sbjct: 169 AHEMTERQPQLRVLYLSAEQFMYRFVQALRDKQMMDFKHMFRSVDVLMVDDVQFIAGKDS 228

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++   +  ++++A   P         + SRL+   VV +   D +    V
Sbjct: 229 TQEEFFHTFNALIDQNKQIIISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGV 288

Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
           +    A  +     + I   +  ++  R+  ++   E  + ++   A   G  IT   A 
Sbjct: 289 LQSKVAAYRETYPDLSIADGVLEFLAHRITTNVRVLEGALMRLFAFASLVGGEITLDRAQ 348

Query: 237 EVLKETQQC 245
           E L +  + 
Sbjct: 349 ECLTDVLRA 357


>gi|325678552|ref|ZP_08158163.1| chromosomal replication initiator protein DnaA [Ruminococcus albus
           8]
 gi|324109771|gb|EGC03976.1| chromosomal replication initiator protein DnaA [Ruminococcus albus
           8]
          Length = 465

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 89/247 (36%), Gaps = 40/247 (16%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDS---------------WPSWPSRVVILVGPSGSGKS 78
               ++ ++ +  S+ + A     +                P+     +I+ G SG GK+
Sbjct: 117 AKDSLTFENFVKGSSNDLAYAFCKAVAEKYDKDKHSTGDIDPNKVFNPLIIYGDSGLGKT 176

Query: 79  CLANIWSDK-------------SRSTRFSNIAKSLD-------SILIDTRKPVLLEDIDL 118
            L      +             +     + + ++L+                +L++DI +
Sbjct: 177 HLMKAIEHEVNKNHPEMKIIYTTGEAFINELVRALELKETVDFHEKYRNADILLVDDIQI 236

Query: 119 LDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPD 174
           +   +    + FH  N ++     +++T+   P +    L D + +RL       +  PD
Sbjct: 237 IAGKERMQDEFFHTFNDLYNAGKQIVLTSDVLPSNI-TKLQDRIATRLSLGVQADVQPPD 295

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    +I +      + +   +   I ++++ ++   E  V K+  L +      + S+
Sbjct: 296 FETRMAIINRKAELLGLKLSDNVVRLIAEKLKTNIRQLEGTVKKIKALTVYTNESPSVSM 355

Query: 235 AAEVLKE 241
           A  V+KE
Sbjct: 356 AQRVIKE 362


>gi|328945174|gb|EGG39329.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK1087]
          Length = 450

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 82/245 (33%), Gaps = 30/245 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + D+ +           A+ + ++  +     + + G  G GK+ L N  
Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165

Query: 85  SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121
            ++          K + +                     +  +   +L++DI  L     
Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + F+  N++H  +  +++T+   P         L +R K      I+ PD +    
Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239
           ++     +           Y+  + + ++   E  ++ +  +A  R    IT  +AAE +
Sbjct: 286 ILRNKIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345

Query: 240 KETQQ 244
           +  +Q
Sbjct: 346 RARKQ 350


>gi|325689354|gb|EGD31360.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus
           sanguinis SK115]
          Length = 450

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 82/245 (33%), Gaps = 30/245 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + D+ +           A+ + ++  +     + + G  G GK+ L N  
Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165

Query: 85  SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121
            ++          K + +                     +  +   +L++DI  L     
Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + F+  N++H  +  +++T+   P         L +R K      I+ PD +    
Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239
           ++     +           Y+  + + ++   E  ++ +  +A  R    IT  +AAE +
Sbjct: 286 ILRNKIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345

Query: 240 KETQQ 244
           +  +Q
Sbjct: 346 RARKQ 350


>gi|260434926|ref|ZP_05788896.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           WH 8109]
 gi|260412800|gb|EEX06096.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           WH 8109]
          Length = 465

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 79/239 (33%), Gaps = 28/239 (11%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-- 86
                   R   +V      A     +    P R    + + G  G GK+ L        
Sbjct: 126 LNPRYVFGR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLGKTHLMQAIGHYR 183

Query: 87  -----KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQ 125
                ++R    S    + D I                    +L++DI  ++  +    +
Sbjct: 184 LEIDPRARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDIQFIEGKEYTQEE 243

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N++H+    +++ +   P         L SR +   +  I  PD +    ++ K 
Sbjct: 244 FFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADIQSPDLETRMAILQKK 303

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
               ++ + + L  YI  R   ++   E  + +    A   G+ +T    A +L  T Q
Sbjct: 304 AEQERMSLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITGLPMTVESVAPMLDPTGQ 362


>gi|78212507|ref|YP_381286.1| chromosomal replication initiation protein [Synechococcus sp.
           CC9605]
 gi|78196966|gb|ABB34731.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           CC9605]
          Length = 450

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 84/254 (33%), Gaps = 29/254 (11%)

Query: 18  NDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73
           +   +N  ++ +           R   +V      A     +    P R    + + G  
Sbjct: 96  SAPARNGFQRRYLPGLNPRYVFGR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGV 153

Query: 74  GSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT---------------RKPVLL 113
           G GK+ L              +       ++  + LI                    +L+
Sbjct: 154 GLGKTHLMQAIGHYRLEIDPGARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILV 213

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  ++  +    + FH  N++H+    +++ +   P         L SR +   +  I
Sbjct: 214 DDIQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADI 273

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             PD +    ++ K     ++ + + L  YI  R   ++   E  + +    A   G+ +
Sbjct: 274 QSPDLETRMAILQKKAEQERMSLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITGLPM 333

Query: 231 TRSLAAEVLKETQQ 244
           T    A +L  T Q
Sbjct: 334 TVESVAPMLDPTGQ 347


>gi|297570614|ref|YP_003696388.1| chromosomal replication initiator protein DnaA [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296930961|gb|ADH91769.1| chromosomal replication initiator protein DnaA [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 544

 Score = 95.2 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 81/236 (34%), Gaps = 28/236 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + +  ++  +   A      +   P      + L   SG GK+ L +         
Sbjct: 196 NPRYTFETFVIGESNRFAHATALAVSEQPGSTYNPLFLYSESGMGKTHLLHAIGNSVQEM 255

Query: 85  ----------SDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND-----TQL 126
                     +++  +   + +A        D   T   +L++DI  L   D      + 
Sbjct: 256 FPNRKVLYVSAEEFTNAFINALANGQMHNFKDQFRTVDVLLIDDIQFLSGRDRSRTLEEF 315

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  +++T+   P         + SR  +     I LP+ +    ++ +  
Sbjct: 316 FHTFNALINANKQIVITSDVAPNLLVDFEDRMISRFNSGITAAIDLPNLETRIAILNRKA 375

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + + + +  +I  +M  ++   E  + ++   A      I+  LA   LK+ 
Sbjct: 376 VAEGLDVPRDVVEFIASKMTTNVREMEGALRRVRAFADLTKQSISLELAESQLKDM 431


>gi|269124278|ref|YP_003297648.1| chromosomal replication initiator protein DnaA [Thermomonospora
           curvata DSM 43183]
 gi|268309236|gb|ACY95610.1| chromosomal replication initiator protein DnaA [Thermomonospora
           curvata DSM 43183]
          Length = 721

 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 85/235 (36%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS--DKSR 89
               + +  ++ S+   A     +    P++    + + G SG GK+ L +      +S 
Sbjct: 381 NPKYTFETFVIGSSNRFAHAAAVAVAEQPAKAYNPLFIYGDSGLGKTHLLHAIGHYAQSL 440

Query: 90  STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
            +       S +    D    +                  L++DI  L+  +    + FH
Sbjct: 441 FSGVRVRYVSSEEFTNDFINAIRDGKADHFRRRYRDIDILLVDDIQFLEGKEQTQEEFFH 500

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H     +++++   P    V L D L +R +      +  P+ +    ++ K   
Sbjct: 501 TFNTLHNASKQIVISSDRPPKDL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILQKKAR 559

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              + + + +  +I  ++  ++   E  + ++   A      +   +A  VLK+ 
Sbjct: 560 QEGLAVPQDVVEFIASQIATNIRELEGALIRVTAYASLNRQSVDMRVAETVLKDL 614


>gi|15835844|ref|NP_300368.1| chromosomal replication initiation protein [Chlamydophila
           pneumoniae J138]
 gi|8978683|dbj|BAA98519.1| replication initiation factor [Chlamydophila pneumoniae J138]
          Length = 460

 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 73/214 (34%), Gaps = 28/214 (13%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-------RVVILVGPSGSGKSCLAN---- 82
               ++  + LV    +   R++  +   P          + L GP GSGK+ L      
Sbjct: 104 VNPEMTFSNFLVTPENDLPFRVLQEFTKSPDENGGVTFNPIYLFGPEGSGKTHLMQSAIS 163

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF---NDTQ 125
           +  +      + +     + ++   R                + +EDI++         +
Sbjct: 164 VLRESGGKILYVSSDLFTEHLVSAIRSGEMQKFRSFYRNIDALFIEDIEVFSGKSATQEE 223

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+H     +++++   PV        L SR +    + I     + L   +++ 
Sbjct: 224 FFHTFNSLHSEGKLIVVSSSYAPVDLVAVEDRLISRFEWGVAIPIHPLVQEGLRSFLMRQ 283

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
                I I +    +++  +  ++      ++ +
Sbjct: 284 VERLSIRIQETALDFLIYALSSNVKTLLHALNLL 317


>gi|15618229|ref|NP_224514.1| chromosomal replication initiation protein [Chlamydophila
           pneumoniae CWL029]
 gi|16752730|ref|NP_444997.1| chromosomal replication initiation protein [Chlamydophila
           pneumoniae AR39]
 gi|33241653|ref|NP_876594.1| chromosomal replication initiation protein [Chlamydophila
           pneumoniae TW-183]
 gi|14194708|sp|Q9Z8M9|DNAA1_CHLPN RecName: Full=Chromosomal replication initiator protein DnaA 1
 gi|4376586|gb|AAD18458.1| Replication Initiation Factor [Chlamydophila pneumoniae CWL029]
 gi|7189371|gb|AAF38287.1| chromosomal replication initiator protein DnaA [Chlamydophila
           pneumoniae AR39]
 gi|33236162|gb|AAP98251.1| replication initiation protein [Chlamydophila pneumoniae TW-183]
          Length = 460

 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 73/214 (34%), Gaps = 28/214 (13%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-------RVVILVGPSGSGKSCLAN---- 82
               ++  + LV    +   R++  +   P          + L GP GSGK+ L      
Sbjct: 104 VNPEMTFSNFLVTPENDLPFRVLQEFTKSPDENGGVTFNPIYLFGPEGSGKTHLMQSAIS 163

Query: 83  IWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF---NDTQ 125
           +  +      + +     + ++   R                + +EDI++         +
Sbjct: 164 VLRESGGKILYVSSDLFTEHLVSAIRSGEMQKFRSFYRNIDALFIEDIEVFSGKSATQEE 223

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS+H     +++++   PV        L SR +    + I     + L   +++ 
Sbjct: 224 FFHTFNSLHSEGKLIVVSSSYAPVDLVAVEDRLISRFEWGVAIPIHPLVQEGLRSFLMRQ 283

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
                I I +    +++  +  ++      ++ +
Sbjct: 284 VERLSIRIQETALDFLIYALSSNVKTLLHALNLL 317


>gi|296875521|ref|ZP_06899593.1| DNA-directed DNA replication initiator protein [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433445|gb|EFH19220.1| DNA-directed DNA replication initiator protein [Streptococcus
           parasanguinis ATCC 15912]
          Length = 452

 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 84/244 (34%), Gaps = 30/244 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
                    + D+ +           A+ + ++  +     + + G  G GK+ L N   
Sbjct: 110 IDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAIG 168

Query: 86  DK-----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF---- 121
           ++       +      A++  +  ++               +   +L++DI  L      
Sbjct: 169 NQILENIPNARVKYVPAETFINEFLEHLRLGEMKTFKNTYRSLDLLLIDDIQSLGGKKVT 228

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + F+  N++H  +  +++T+   P         L +R K      I+ PD +    +
Sbjct: 229 TQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDFETRIAI 288

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLK 240
           +     D           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++
Sbjct: 289 LRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMAKVKKLKEITIDVAAEAIR 348

Query: 241 ETQQ 244
             + 
Sbjct: 349 ARKN 352


>gi|301165372|emb|CBW24943.1| Chromosomal replication initiator protein dnaA [Bacteriovorax
           marinus SJ]
          Length = 437

 Score = 95.2 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 29/234 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVR---LIDSWPS--WPSRVVILVGPSGSGKSCL--------- 80
               + D+ +V  +   A      I   P        + +   SG GK+ L         
Sbjct: 102 DPTKTFDNFIVGPSNNLAHATAVAISRTPGDQGKYPSLYIHSNSGLGKTHLLYAVANGIK 161

Query: 81  ------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQ 125
                       A  +  +   +  S    +           ++++DI  L        +
Sbjct: 162 ENFPQYVVYLTTARDFMKEYIESVKSKTVDAFQEKFTKKIDVLMIDDIHELKGKKGTQDE 221

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           LFH+ N ++     L+ T+   P         + +RL+   V+ I  PD +    ++ + 
Sbjct: 222 LFHVFNGLYTNGKQLIFTSDKSPEEIDGIEERIKTRLQWGLVIDIQKPDFETRIAILKRK 281

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             +  +++   +   I   ++ ++   E  + K+   A    + +   +  ++L
Sbjct: 282 AYELDLYLQDDILTLIANSIKTNIRELEGSLVKLCAYADVMNVEVDTEMVKDIL 335


>gi|317054732|ref|YP_004103199.1| chromosomal replication initiator protein DnaA [Ruminococcus albus
           7]
 gi|315447001|gb|ADU20565.1| chromosomal replication initiator protein DnaA [Ruminococcus albus
           7]
          Length = 459

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 38/241 (15%)

Query: 38  ISRDDLLVHSAIEQAVRLIDS-------------WPSWPSRVVILVGPSGSGKSCLANIW 84
            + D+ +  S+   A     +              P      +I+ G SG GK+ L    
Sbjct: 117 YTFDNFIRGSSNSLAYAFCKAVAEKYDAKNSDNVDPDKVFNPLIIYGDSGLGKTHLMKAI 176

Query: 85  SDK-------------SRSTRFSNIAKSLD-------SILIDTRKPVLLEDIDLLDFNDT 124
             K             +     + + K+L+                +L++DI ++   + 
Sbjct: 177 EYKVSKDHPDLKIIYTTGEAFINELVKALEFKDTVNFHEKYRNADLLLVDDIQIIAGKER 236

Query: 125 ---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEK 180
              + FH  N ++     ++ T+   P      L D  S RL    +  +  PD +    
Sbjct: 237 MQDEFFHTFNELYNARKQIVFTSDVLPSKMS-KLQDRISTRLSLGVLADVQAPDFETRMA 295

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +I +      + +   +   I ++++ ++   E  V K+  L +      + S+A  V+K
Sbjct: 296 IINRKAELLGLKLSDNVVRLIAEKLKTNIRQLEGTVKKIKALTMYTNESPSISMAQRVIK 355

Query: 241 E 241
           E
Sbjct: 356 E 356


>gi|307717718|ref|YP_003873250.1| chromosomal replication initiator protein DnaA [Spirochaeta
           thermophila DSM 6192]
 gi|306531443|gb|ADN00977.1| chromosomal replication initiator protein DnaA [Spirochaeta
           thermophila DSM 6192]
          Length = 452

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 68/198 (34%), Gaps = 23/198 (11%)

Query: 68  ILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTR-------------- 108
           ++ G  G GK+ L       ++ +          A+   +  I +               
Sbjct: 150 LIYGGVGLGKTHLLQSIGNSVYGEFHNLKVVYVTAEEFTNEFIASIQNKETHKFKTKYRN 209

Query: 109 -KPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI           +LFH  N+++  +  ++ T              L SR + 
Sbjct: 210 VDVLLIDDIHFFMNKTETQEELFHTFNALYDANKQMVFTCDRPVSELKNISHRLRSRFER 269

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              V +  P  +    ++ K    + + I  ++  +I + +  ++   E  + K+   A 
Sbjct: 270 GLNVDLQPPSFETRYAILKKKIEQKTVHIPDEVITFIAEHVTTNVRDLEAALTKLIAYAE 329

Query: 225 SRGMGITRSLAAEVLKET 242
                IT  +A   LK+ 
Sbjct: 330 LVHRDITIDIAKSQLKDM 347


>gi|297558986|ref|YP_003677960.1| chromosomal replication initiator protein DnaA [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843434|gb|ADH65454.1| chromosomal replication initiator protein DnaA [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 652

 Score = 94.8 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 89/256 (34%), Gaps = 33/256 (12%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVIL 69
           P + +   P                 + D  ++ S+      A       P+     + +
Sbjct: 298 PGRSQEVPPGEHAR-------LNPKYTFDTFVIGSSNRFAHAASVAAAEAPAKAYNPLFI 350

Query: 70  VGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSILIDTRKP------------- 110
            G SG GK+ L +          +    R+ +  +  +  +   R               
Sbjct: 351 HGGSGLGKTHLLHAIGHYTHRLYEGSRVRYVSSEEFTNEFINSIRDGKADGFRRRYRDID 410

Query: 111 -VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI  L+  +    + FH  N++H  D  +++++   P         + SR +   
Sbjct: 411 VLLVDDIQFLENKEQTQEEFFHTFNTLHNSDKQIVISSDRPPKQLTTLEDRMRSRFEWGL 470

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  +  P+ +    ++ K  A   +    ++  +I  ++  ++   E  + ++   A   
Sbjct: 471 LTDVQPPELETRIAILRKKAAQEGLAAPPEVLEFIASKISTNIRELEGALIRVTAFASLN 530

Query: 227 GMGITRSLAAEVLKET 242
              +   L ++VL++ 
Sbjct: 531 RQSVDLDLTSQVLRDL 546


>gi|95929986|ref|ZP_01312726.1| chromosomal replication initiator protein DnaA [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133955|gb|EAT15614.1| chromosomal replication initiator protein DnaA [Desulfuromonas
           acetoxidans DSM 684]
          Length = 444

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDK------------------SRSTRFSNIAKSLDSIL--ID 106
           + + G  G GK+ L N   ++                  +     S     +D       
Sbjct: 144 LFIYGGVGLGKTHLINAIGNEIIKNNKKIKVSYYSSEKFTNELINSIRYGKMDEFRNKFR 203

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   +L++D+  +   +    + FH  NS+++    +++T+  FP         L SR +
Sbjct: 204 SIDVLLIDDVQFIAGKERTQEEFFHTFNSLYESHKQIVVTSDKFPKEIPGLEERLRSRFE 263

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              +  I  PD +  + ++        I + +++A ++   +  ++   E  + ++   +
Sbjct: 264 WGLIADIQPPDIETKQAILEAKAEQNNIILPQEVALFLSNSVISNIRELEGYLVRIGAYS 323

Query: 224 LSRGMGITRSLAAEVLKE 241
                 I+  +A  +LK+
Sbjct: 324 SLTSTPISIEMAKNILKD 341


>gi|319945982|ref|ZP_08020231.1| DNA-directed DNA replication initiator protein [Streptococcus
           australis ATCC 700641]
 gi|319747790|gb|EFW00035.1| DNA-directed DNA replication initiator protein [Streptococcus
           australis ATCC 700641]
          Length = 456

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 83/237 (35%), Gaps = 30/237 (12%)

Query: 37  GISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----- 87
             + D+ +           A+ + ++  +     + + G  G GK+ L N   ++     
Sbjct: 121 KYTFDNFVSGDGNQWALAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAIGNQIMENY 179

Query: 88  -SRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDF----NDTQLFH 128
            +   ++      ++  L   R                +L++DI  L         + F+
Sbjct: 180 PNARVKYIPAESFINEFLERLRLNDMDTFKKTYRNLDLLLIDDIQSLGGKKVTTQEEFFN 239

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N+++  +  +++T+   P         L +R K      I+ PD +    ++     D
Sbjct: 240 TFNALYGDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDFETRIAILRNKIED 299

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
                      Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  + 
Sbjct: 300 LDFTFPDDTLEYLAGQFDSNVRDLEGALNDISLVARVKKIKDITIDVAAEAIRARKN 356


>gi|332286195|ref|YP_004418106.1| chromosomal replication initiation protein [Pusillimonas sp. T7-7]
 gi|330430148|gb|AEC21482.1| chromosomal replication initiation protein [Pusillimonas sp. T7-7]
          Length = 466

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 84/232 (36%), Gaps = 27/232 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS---- 90
           ++ D+ +   A + A          P      + L G  G GK+ L +   +   +    
Sbjct: 134 LTFDNFVTGKANQLARAAALQVAENPGVSYNPLFLYGGVGLGKTHLIHAIGNTLLANGNG 193

Query: 91  --TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFHIIN 131
              R+ +  + +  ++                +   +L++DI           + F+   
Sbjct: 194 TRVRYVHADQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFAGKNRTQEEFFYAFE 253

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++      +++T+ T+P         L SR  +   V I  P+ +    +++       +
Sbjct: 254 AMVAQRKQIIITSDTYPKELSNIDSRLISRFDSGLTVAIEPPELEMRVAILLHKAQTEGV 313

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242
            + +++A +I + +  ++   E  + K+   A   G  + T  +  + LK+ 
Sbjct: 314 TMPEEVAFFIAKHLRSNVRELEGALRKVSAYARFHGREVLTVDVCKDALKDL 365


>gi|187479881|ref|YP_787906.1| chromosomal replication initiation protein [Bordetella avium 197N]
 gi|123765885|sp|Q2KTI9|DNAA_BORA1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|115424468|emb|CAJ51022.1| chromosomal replication initiator protein [Bordetella avium 197N]
          Length = 483

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 82/232 (35%), Gaps = 27/232 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89
           ++ ++ +   A + A          P      + L G  G GK+ L +       +  + 
Sbjct: 151 LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 210

Query: 90  STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136
                  A    S ++   +    +D       +DLL  +D Q F   N   +       
Sbjct: 211 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 270

Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
                   +++T+ T+P         L SR  +   V I  P+ +    ++++      +
Sbjct: 271 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 330

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-GITRSLAAEVLKET 242
            + +++A +I + +  ++   E  + K+   A   G   +   +  E LK+ 
Sbjct: 331 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGREALNVDVCKEALKDL 382


>gi|15835139|ref|NP_296898.1| chromosomal replication initiation protein [Chlamydia muridarum
           Nigg]
 gi|270285311|ref|ZP_06194705.1| chromosomal replication initiation protein [Chlamydia muridarum
           Nigg]
 gi|270289328|ref|ZP_06195630.1| chromosomal replication initiation protein [Chlamydia muridarum
           Weiss]
 gi|301336708|ref|ZP_07224910.1| chromosomal replication initiation protein [Chlamydia muridarum
           MopnTet14]
 gi|14194690|sp|Q9PKE4|DNAA1_CHLMU RecName: Full=Chromosomal replication initiator protein DnaA 1
 gi|7190562|gb|AAF39363.1| chromosomal replication initiator protein DnaA [Chlamydia muridarum
           Nigg]
          Length = 456

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 71/213 (33%), Gaps = 28/213 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWP-------SWPSRVVILVGPSGSGKSCLANIWSDK 87
              +S  + LV    +  VR++  +         +P   + L GP  SGK+ L       
Sbjct: 104 DPQMSFANFLVTPENDLPVRILQEFAKVSEQGKGFPFNPIYLFGPESSGKTHLMQAAVGI 163

Query: 88  SRSTRFSNIAKSLD------------------SILIDTRKPVLLEDIDLLDF---NDTQL 126
            R      +  S                           + + +EDI++L        + 
Sbjct: 164 LREAGVKTLYVSSQLFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEF 223

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  NS+H     +++++   P         L SR +    V +S    + L+  + +  
Sbjct: 224 FHTFNSLHTEGKLIVISSIFAPGDLKAMEERLISRFEWGIAVPVSPLTREGLKSFLERRI 283

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               I I++    +++Q +   +      +  +
Sbjct: 284 EQLNIRIEETALDFLIQALSSHIKSLLHALTTL 316


>gi|315187335|gb|EFU21091.1| chromosomal replication initiator protein DnaA [Spirochaeta
           thermophila DSM 6578]
          Length = 452

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 23/198 (11%)

Query: 68  ILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTR-------------- 108
           ++ G  G GK+ L       ++ +          A+   +  I +               
Sbjct: 150 LIYGGVGLGKTHLLQSIGNSVYGEFQNLKVVYVTAEEFTNEFIASIQNKETHKFKTKYRN 209

Query: 109 -KPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI           +LFH  N+++  +  ++ T              L SR + 
Sbjct: 210 VDVLLIDDIHFFMNKTETQEELFHTFNALYDANKQMVFTCDRPVSELKNISHRLRSRFER 269

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              V +  P  +    ++ K    + I I  ++  +I + +  ++   E  + K+   A 
Sbjct: 270 GLNVDLQPPSFETRYAILKKKIEQKPIHIPDEVITFIAEHVTTNVRDLEAALTKLIAYAE 329

Query: 225 SRGMGITRSLAAEVLKET 242
                IT  +A   LK+ 
Sbjct: 330 LVHRDITIDIAKSQLKDM 347


>gi|15604971|ref|NP_219755.1| chromosomal replication initiation protein [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76788972|ref|YP_328058.1| chromosomal replication initiation protein [Chlamydia trachomatis
           A/HAR-13]
 gi|237802673|ref|YP_002887867.1| chromosomal replication initiation protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804595|ref|YP_002888749.1| chromosomal replication initiation protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311051|ref|ZP_05353621.1| chromosomal replication initiation protein [Chlamydia trachomatis
           6276]
 gi|255317352|ref|ZP_05358598.1| chromosomal replication initiation protein [Chlamydia trachomatis
           6276s]
 gi|14194662|sp|O84252|DNAA1_CHLTR RecName: Full=Chromosomal replication initiator protein DnaA 1
 gi|3328661|gb|AAC67843.1| Replication Initiation Factor [Chlamydia trachomatis D/UW-3/CX]
 gi|76167502|gb|AAX50510.1| DnaA [Chlamydia trachomatis A/HAR-13]
 gi|231272895|emb|CAX09806.1| Chromosomal replication initiation protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273907|emb|CAX10699.1| Chromosomal replication initiation protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296435766|gb|ADH17940.1| chromosomal replication initiation protein [Chlamydia trachomatis
           G/9768]
 gi|296436690|gb|ADH18860.1| chromosomal replication initiation protein [Chlamydia trachomatis
           G/11222]
 gi|296437626|gb|ADH19787.1| chromosomal replication initiation protein [Chlamydia trachomatis
           G/11074]
 gi|297140125|gb|ADH96883.1| chromosomal replication initiation protein [Chlamydia trachomatis
           G/9301]
 gi|297748380|gb|ADI50926.1| DnaA [Chlamydia trachomatis D-EC]
 gi|297749260|gb|ADI51938.1| DnaA [Chlamydia trachomatis D-LC]
          Length = 456

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 28/213 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWP-------SWPSRVVILVGPSGSGKSCLANIWSDK 87
              +S  + LV    +  VR++  +         +P   + L GP  SGK+ L       
Sbjct: 104 DPNMSFANFLVTPENDLPVRILQEFAKVSEQGKGFPFNPIYLFGPESSGKTHLMQAAVGG 163

Query: 88  SRSTRFSNIAKSLD------------------SILIDTRKPVLLEDIDLLDF---NDTQL 126
            R      +  + +                         + + +EDI++L        + 
Sbjct: 164 LREAGVKTLYVTSELFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEF 223

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  NS+H     +++++   P         L SR +    + +S    + L+  + +  
Sbjct: 224 FHTFNSLHTEGKLIVISSTFAPGDLKAMEERLISRFEWGISIPVSPLIREGLKSFLERRT 283

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               I I++    +++Q +   +      +  +
Sbjct: 284 EKLNIRIEETALDFLIQALSSHVKSLLHALTTL 316


>gi|159903109|ref|YP_001550453.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. MIT 9211]
 gi|226735832|sp|A9BEI9|DNAA_PROM4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|159888285|gb|ABX08499.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. MIT 9211]
          Length = 454

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 26/228 (11%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------DKSRSTRF 93
            +V      A     S    P++    + + G  G GK+ L           D      +
Sbjct: 124 FVVGPNSRIAHAAAMSVAEAPAKEFNPLFICGGVGLGKTHLMQAIGHYRLEIDPGAKVSY 183

Query: 94  SNIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQY 136
            +     + +++                   +L++DI  L+  +    + FH  N++H+ 
Sbjct: 184 VSTETFTNDLIVAIRQDGMQSFRDKYRAADLILVDDIQFLEGKEYTQEEFFHTFNALHES 243

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            + +++ +   P         L SR     +  +  PD +    ++ K     ++ + + 
Sbjct: 244 GTQIVLASDRPPNQIPRLQERLISRFSMGLIADVQAPDLETRMAILQKKAEQDRVRLPRD 303

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           L  +I  R   ++   E  + +    A   G+ +T    A +L    Q
Sbjct: 304 LIQFIAGRFTLNIRELEGALTRAVAFASITGLPMTVESIAPMLDPNGQ 351


>gi|227485757|ref|ZP_03916073.1| DNA-directed DNA replication initiator protein [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227236312|gb|EEI86327.1| DNA-directed DNA replication initiator protein [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 459

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 41/236 (17%)

Query: 14  DKQKNDQPKNKEE-QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR------- 65
            + + D+ K+  + QL            ++ +   + + A+ +  +     SR       
Sbjct: 104 GQMRIDKVKSFPKPQL------EEANVFENFVQGKSNQYALGISQAVADTISRGDVSKVY 157

Query: 66  -VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI------------------- 105
             + + G SG GK+ L    + +    R       L S                      
Sbjct: 158 NPLFIYGSSGLGKTHLIQAIAHQILEARDDAYVMYLSSEKFTNEMIAALRTNKNQEFREK 217

Query: 106 -DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
             +   +L++DI  +   +    + FH  N ++     +++T+   P         L SR
Sbjct: 218 YRSADILLIDDIQFIANKEATQEEFFHTFNDLYNAGKQIVITSDKPPREIKHLEDRLVSR 277

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEK 214
                +  IS PD +    ++ K   D    ID  + +YI   ++   R L  A  
Sbjct: 278 FNYGIIADISRPDYETRVAILQKKLEDLGAIIDNSILSYIALEIDTNIRDLEGALS 333


>gi|119953225|ref|YP_945434.1| chromosomal replication initiator protein DnaA [Borrelia turicatae
           91E135]
 gi|254777889|sp|A1QZM2|DNAA_BORT9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|119861996|gb|AAX17764.1| chromosomal replication initiator protein DnaA [Borrelia turicatae
           91E135]
          Length = 484

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRSTR- 92
             + ++ ++    + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 145 KYTFENFIIGPNNKLAYNASLSIAKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHK 204

Query: 93  -FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130
            F  +  + ++ L +  + +                  L++DI  L   +    +LFH  
Sbjct: 205 EFKILYVTAENFLNEFVESIKTNETKRFKKKYRHLDMLLIDDIHDLQKKEGIQEELFHTF 264

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  ++ T    P         L SR      V IS P+ +    +I K   +  
Sbjct: 265 NALYEDNKQMVFTCDRQPSELINFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + +++  ++   E  V K+
Sbjct: 325 IKVPKNILNLVAKKVTTNIRDLEAAVTKL 353


>gi|254503456|ref|ZP_05115607.1| chromosomal replication initiator protein DnaA [Labrenzia
           alexandrii DFL-11]
 gi|222439527|gb|EEE46206.1| chromosomal replication initiator protein DnaA [Labrenzia
           alexandrii DFL-11]
          Length = 492

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 79/239 (33%), Gaps = 28/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + +  +   +   A+       S        + L    G GK+ L    + K R++
Sbjct: 155 DPKYTFETFVEGDSNNLALAAARQVASGGAVTFNPLYLHASVGLGKTHLMQAVASKVRNS 214

Query: 92  RFSNIAKSLDS------ILIDTRKPVLLED----IDLLDFNDTQLFH----------IIN 131
               +  + +         + ++  +  +D    IDLL  +D Q  H           +N
Sbjct: 215 GRKVLYLTAEHFMYKFVAALKSQSALAFKDNLRTIDLLLIDDMQFLHGKQVQQEFCHTLN 274

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR-- 189
           ++      +++ A   P         + SRL    VV I  PD      ++V        
Sbjct: 275 ALIDGARQVIVAADRPPSDLDTLDDRVRSRLSGGLVVGIQEPDFVLRRSILVSRVEAAHK 334

Query: 190 ---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
              Q  +   +  YI + +  S    E  ++++          IT+ +A   L++  + 
Sbjct: 335 SYPQFDVPDSVLDYIARHVASSGRDLEGALNRLIAHNQLTNQPITQEMAEMTLRDLVRS 393


>gi|329768086|ref|ZP_08259595.1| chromosomal replication initiator protein DnaA [Gemella haemolysans
           M341]
 gi|328838241|gb|EGF87853.1| chromosomal replication initiator protein DnaA [Gemella haemolysans
           M341]
          Length = 494

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 76/241 (31%), Gaps = 38/241 (15%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSW-----PSWPSRVVILVGPSGSGKSCLANIWSDKSRS-- 90
            + ++ +V         +  +W     P      + + G  G GK+ L +   ++  +  
Sbjct: 154 YTFENFVVGEGNAFTHNI--AWNVAVSPGGIYNPLFIYGGVGLGKTHLLHAIGNEMEANF 211

Query: 91  ------------------TRFSNIAKSLDSILIDTR--------KPVLLEDIDLLDF--- 121
                                  +    +    D            +L++DI  L     
Sbjct: 212 PDFKIECISSEKFLNEFLASIKPMKDKNNYTNADEDFRRKYRDVDALLIDDIQFLSGKTE 271

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                FH  N +      +++ +   P         L +R        I+ PD +    +
Sbjct: 272 TQNAFFHTFNELQMNQKQIVLISDRSPSQLNDLEDRLVTRFSQGITADITPPDFETRMAI 331

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           I        I +D++   YI   +  ++   E ++ ++   A S+    + S+A E+LK 
Sbjct: 332 IKFKCEQFDIKLDEETLTYISSNVSSNIRELEGVLKRIKFTATSKHEQPSLSIAEEILKS 391

Query: 242 T 242
            
Sbjct: 392 A 392


>gi|298369733|ref|ZP_06981050.1| DNA replication initiator protein [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282290|gb|EFI23778.1| DNA replication initiator protein [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 504

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 74/230 (32%), Gaps = 26/230 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94
            + + L+       A     S    P +      L G +G GK+ L     ++    R  
Sbjct: 173 YTFETLVEGKGNRIAAAAAQSIAENPGQSYNPFFLYGSTGLGKTHLVQAIGNELLKNRPD 232

Query: 95  NIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131
              + + S                            ++++DI  +   D    + F++ N
Sbjct: 233 AKVRYMHSDDYIRSFMSAVRTNSYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYN 292

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
             H     L++T    P         L SR      +++  P+ +    ++ K      I
Sbjct: 293 HFHNEKKQLILTCDVLPAKIEDMDDRLKSRFSWGLTLELEPPELEMRVAILQKKAESSGI 352

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            +  + A +I   +  ++   E   +++   +      I   LA + L++
Sbjct: 353 SLTDEAAFFIANLIRSNVRELEGAFNRVSASSRFMNKPIDIDLARDALQD 402


>gi|312869247|ref|ZP_07729419.1| chromosomal replication initiator protein DnaA [Lactobacillus oris
           PB013-T2-3]
 gi|311095268|gb|EFQ53540.1| chromosomal replication initiator protein DnaA [Lactobacillus oris
           PB013-T2-3]
          Length = 435

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 28/262 (10%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVV 67
           + +  +QK+ +P+        + P     + +  +V    + A     +    P     +
Sbjct: 78  YVLTGEQKSPKPQPSAVPTS-NIPLNPYYNFETFVVGDGNKIAHAAALNAAERPGYMNPL 136

Query: 68  ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK- 109
            + G  G GK+ L                     S++  +   ++I K       +  + 
Sbjct: 137 FIYGGVGLGKTHLMEAIGNYMLKINKNARVKYVTSEEFTNDFINSIQKRTTEQFREEYRN 196

Query: 110 --PVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLK 163
              +L++DI  L        + F+  N+++     +++T+   P      L D L SR  
Sbjct: 197 LDLLLIDDIQFLADKEGTQIEFFNTFNTLYDQQKQIVLTSDRMPREIP-ELQDRLVSRFM 255

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V+I+ PD +    ++     +  I I      YI  +++ ++   E  + K+   A
Sbjct: 256 WGMPVEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNVRELEGALTKVQVYA 315

Query: 224 LSRGMGITRSLAAEVLKETQQC 245
                 IT  LA+  LK+ +  
Sbjct: 316 DLSNEIITPHLASRALKDFRHS 337


>gi|322373978|ref|ZP_08048512.1| replication initiation protein DnaA [Streptococcus sp. C150]
 gi|321276944|gb|EFX54015.1| replication initiation protein DnaA [Streptococcus sp. C150]
          Length = 454

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 86/268 (32%), Gaps = 37/268 (13%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDS 58
           N+   D+S      +    P         +       + D+ +       +V     +  
Sbjct: 91  NVTTNDFS----SNKDLQSPALP----TLNSDLNSKYTFDNFIQGDENRWSVAASLAVAD 142

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSL 100
            P      + + G  G GK+ L N   +K                              +
Sbjct: 143 SPGATYNPLFIYGGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVVHIRLDKM 202

Query: 101 DSILIDTR--KPVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
           D + +  R    +L++DI  L          + F+  N +H  +  +++T+   P     
Sbjct: 203 DELKLKYRHLDVLLIDDIQSLAKKSTQATQEEFFNTFNVLHNNNKQIVLTSDRNPDQLNE 262

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L +R K    V I+ PD +    ++     D       +   Y+  + + ++   E
Sbjct: 263 MEERLVTRFKWGLTVNITPPDFETRVAILTNKIMDYDYHFPSETIEYLAGQFDSNVRDLE 322

Query: 214 KLVDKMDNLALSRG-MGITRSLAAEVLK 240
             +  +  +A  R    IT  +AAE ++
Sbjct: 323 GALKDISLVANVRQLDTITVEVAAEAIR 350


>gi|289177770|gb|ADC85016.1| DnaA [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 587

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 84/236 (35%), Gaps = 34/236 (14%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANI---WSDKSRSTRF 93
            D  +   +   A  +  +      R    + + G SG GK+ L +    ++ +++  R 
Sbjct: 247 FDTFIQGDSNRFARTVALAVAEGSGRDYNPLCIYGGSGLGKTHLLHAIGNYAVQNQKPRP 306

Query: 94  SNIAKSLDSILIDTRKPV-------------------------LLEDIDLLDFND---TQ 125
             +  + +    D  + +                         L++DI  L        Q
Sbjct: 307 RVLYVTSEEFTNDFIESIRTSGQDNEDPAMEKFYRKYREVDVLLIDDIQFLGGKRGILEQ 366

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS++Q +  +++ +   P +       L SR +    V +  P+ +    ++  +
Sbjct: 367 FFHTFNSLYQANKRIVIASDVPPHNLEDFEDRLISRFEQGITVDVKPPNLETRIAILRML 426

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                I +   +   I +R   ++   E  + ++  +A      +TR+L    L++
Sbjct: 427 AEQNHIRVPNDVLNLIAERFANNVRELEGALKRVIAMASLNHQPVTRALTERTLQD 482


>gi|51244130|ref|YP_064014.1| chromosomal replication initiator protein DnaA [Desulfotalea
           psychrophila LSv54]
 gi|50875167|emb|CAG35007.1| related to chromosomal replication initiator protein DnaA
           [Desulfotalea psychrophila LSv54]
          Length = 487

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 88/238 (36%), Gaps = 27/238 (11%)

Query: 36  LGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN---------- 82
              + D+ +V  +    E A R I +        + +   +G GKS L +          
Sbjct: 154 PRYTFDEFMVGQSNILAESACRAISADADTVGPCLYINSGTGLGKSHLTHAVAHHLLSNS 213

Query: 83  -------IWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDF---NDTQLFH 128
                  + + +  +     I  +   +      +    +L+EDI  L        +L  
Sbjct: 214 PMTRMHYVTAQQFSAEMVHGIKNNSMDMFKKKYQEDCDILLVEDIHTLKGKKKTQEELNE 273

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           +++++ +    +L+TA   P        +  SR+ A  +  I  PD     +++ +  A 
Sbjct: 274 VLDTLVKSGKRVLLTANAAPRELAGIDGEFRSRMSAGLITSIQAPDIKTRSRIVERKAAG 333

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           +++  D+ + +Y+ Q +   +   E  +  +   A   G  I  +L  EV+     C+
Sbjct: 334 QRLSFDEDMTSYLAQNVRGDVRQIESAITAIGARARLMGGYIDMNLIREVVGSVVGCN 391


>gi|87122918|ref|ZP_01078783.1| chromosomal replication initiator protein DnaA [Marinomonas sp.
           MED121]
 gi|86161791|gb|EAQ63091.1| chromosomal replication initiator protein DnaA [Marinomonas sp.
           MED121]
          Length = 376

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 31/202 (15%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D+ +   + + A      +   P      + + G  G GK+ L           
Sbjct: 178 NNSFTFDNFVEGKSNQLAHAAALQVAENPGGAYNPLFIYGGVGLGKTHLMQAVGTELMRH 237

Query: 85  ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126
                          +D  ++ + + I          +   +L++DI      D    + 
Sbjct: 238 NPNAKVVYLHSERFVADMVKALQLNAINDFKR--YYRSVDALLIDDIQFFAGKDRTQEEF 295

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++ +    +++T   +P         L SR      V I  P+ +    ++++  
Sbjct: 296 FHTFNALLEGGQQMILTCDRYPKEIKGLEDRLKSRFGWGLTVAIEPPELETRVAILMRKA 355

Query: 187 ADRQIFIDKKLAAYIVQRMERS 208
            +  I +    A +I Q++ RS
Sbjct: 356 DESNIKLSYDSAFFIAQKI-RS 376


>gi|294338441|emb|CAZ86767.1| Chromosomal replication initiator protein dnaA [Thiomonas sp. 3As]
          Length = 484

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-----WSD 86
              +S + L+   A + A          P R    + + G  G GK+ L +       + 
Sbjct: 150 NPMLSFETLVTGKANQLARAAAIQVAENPGRSYNPLFIYGGVGLGKTHLMHAVGNALLAQ 209

Query: 87  KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128
           +  +      A+   S ++                    +L++D+      D    + F+
Sbjct: 210 QPGARIRYLQAEQFVSEVVRAYQRKAFEEFKRYYHSLDLLLIDDVQFFAGKDKTQEEFFY 269

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    S +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 270 AFEALITKRSQIILTSDTYPKELREMDQRLVSRFDSGLTVAIEPPELEMRVAILLRKADA 329

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + +++A ++ + +  ++   E  + K+   A   G  ++  LA E LK+ 
Sbjct: 330 ELAHLPEEVAFFVAKNVRSNVRELEGALRKILAYARFSGQDVSIGLAKEALKDL 383


>gi|296134505|ref|YP_003641747.1| chromosomal replication initiator protein DnaA [Thiomonas
           intermedia K12]
 gi|295794627|gb|ADG29417.1| chromosomal replication initiator protein DnaA [Thiomonas
           intermedia K12]
          Length = 484

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 86/234 (36%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-----WSD 86
              +S + L+   A + A          P R    + + G  G GK+ L +       + 
Sbjct: 150 NPMLSFETLVTGKANQLARAAAIQVAENPGRSYNPLFIYGGVGLGKTHLMHAVGNALLAQ 209

Query: 87  KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128
           +  +      A+   S ++                    +L++D+      D    + F+
Sbjct: 210 QPGARIRYLQAEQFVSEVVRAYQRKAFEEFKRYYHSLDLLLIDDVQFFAGKDKTQEEFFY 269

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    S +++T+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 270 AFEALITKRSQIILTSDTYPKELREMDQRLVSRFDSGLTVAIEPPELEMRVAILLRKADA 329

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + +++A ++ + +  ++   E  + K+   A   G  ++  LA E LK+ 
Sbjct: 330 ELAHLPEEVAFFVAKNVRSNVRELEGALRKILAYARFSGQDVSIGLAKEALKDL 383


>gi|259502130|ref|ZP_05745032.1| DNA-directed DNA replication initiator protein [Lactobacillus antri
           DSM 16041]
 gi|259169943|gb|EEW54438.1| DNA-directed DNA replication initiator protein [Lactobacillus antri
           DSM 16041]
          Length = 435

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 28/262 (10%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVV 67
           + +  +QK+ +P+        + P     + +  +V    + A     +    P     +
Sbjct: 78  YVLTGEQKSPKPQATATPTS-NIPLNPYYNFETFVVGDGNKIANAAALNAAERPGYMNPL 136

Query: 68  ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK- 109
            + G  G GK+ L                     S++  +   ++I K       +  + 
Sbjct: 137 FIYGGVGLGKTHLMEAIGNYMLKINQNARVKYVTSEEFTNDFINSIQKRTTEQFREEYRN 196

Query: 110 --PVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLK 163
              +L++DI  L        + F+  N+++     +++T+   P      L D L SR  
Sbjct: 197 LDLLLIDDIQFLADKEGTQIEFFNTFNTLYDQQKQIVLTSDRMPREIP-ELQDRLVSRFM 255

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V+I+ PD +    ++     +  I I      YI  +++ ++   E  + K+   A
Sbjct: 256 WGMPVEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNVRELEGALTKVQVYA 315

Query: 224 LSRGMGITRSLAAEVLKETQQC 245
                 IT  LA+  LK+ +  
Sbjct: 316 DLNNEIITPHLASRALKDFRHS 337


>gi|116493575|ref|YP_805309.1| chromosomal replication initiation protein [Lactobacillus casei
           ATCC 334]
 gi|122264962|sp|Q03D55|DNAA_LACC3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|116103725|gb|ABJ68867.1| DNA replication ATPase initiation [Lactobacillus casei ATCC 334]
          Length = 449

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 28/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++    + A     +    P      + + G  G GK+ L     +     
Sbjct: 112 NPKYTFDHFVIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLGN 171

Query: 92  RFSNIAKSLDSILIDTR--------------------KPVLLEDI----DLLDFNDTQLF 127
             +   K + S                            +L++DI    D     +   F
Sbjct: 172 NPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEE-FF 230

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++++    +++T+   P         L SR      V ++ PD +    ++     
Sbjct: 231 HTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKAD 290

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              + I     +YI  ++E ++   E  + ++   +  +   IT SLAA+ LK  +  D
Sbjct: 291 AEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDD 349


>gi|255020209|ref|ZP_05292278.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970351|gb|EET27844.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus
           caldus ATCC 51756]
          Length = 450

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 78/238 (32%), Gaps = 34/238 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86
               +    +   + + A+         P +    + + G  G GK+ L       I   
Sbjct: 116 NPAFNFQSYVEGKSNQLALAAARQVAQHPGKSYNPLYIYGGVGLGKTHLMQAVGNDILQR 175

Query: 87  KSRS--TRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLDFND---TQLFH 128
           +  +     S+    +D +                    +L++DI      D    + FH
Sbjct: 176 QPEAKVLYISSEGFIMDMVRSLQHNTINDFKQRYRKLDALLIDDIQFFAGKDRTQEEFFH 235

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++      +++T   +P         L SR      V I   D +    +++    D
Sbjct: 236 TFNALFDGGRQIIITCDRYPKEVEGLEERLQSRFGWGLTVAIQPHDLETRMAIVLCKAED 295

Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             I + +++A +I +++    R L     +++  ++          +   A E L++ 
Sbjct: 296 HGIQLPEEVAFFIAEKIRSHVRELEGALRRVIAHVNF----THKPYSVESAKEALRDL 349


>gi|319785621|ref|YP_004145096.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464133|gb|ADV25865.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 445

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 27/244 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            F+         D+ +   +       A +            ++L G +G GK+ L    
Sbjct: 104 PFNGNLDPHYVFDNFVEGRSNQLGRAAAWQAAQKPGDRAHNPLLLYGGTGLGKTHLMFAA 163

Query: 85  SDKSR-------------STRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123
            ++ R                +S   ++L     D           +L++DI      D 
Sbjct: 164 GNEMRRLNPGARVLYLRSEQFYSAFFRALQEKTADQFKRQFQQIDALLIDDIQFFAGKDR 223

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  NS+      ++MT   +P       P L SRL     V I  PD +    +
Sbjct: 224 TQEEFFHTFNSLFDSRQQIIMTCDRYPREVDGLEPRLKSRLAWGLSVAIDPPDFETRAAI 283

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++    +R   +  ++A  + ++M  ++   E  ++ +   A   G  I+   A E L++
Sbjct: 284 VLAKARERGTVVPDEVAFLLAKKMRSNVRDLEGALNTLAARANFTGRAISVEFAQETLRD 343

Query: 242 TQQC 245
             + 
Sbjct: 344 LLRA 347


>gi|304392441|ref|ZP_07374382.1| chromosomal replication initiator protein DnaA [Ahrensia sp.
           R2A130]
 gi|303295545|gb|EFL89904.1| chromosomal replication initiator protein DnaA [Ahrensia sp.
           R2A130]
          Length = 596

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 73/219 (33%), Gaps = 32/219 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANI--WS 85
           P     +    +  ++   A     S             + L    G GK+ L     W 
Sbjct: 251 PLDPSFTFATFVEGASNRVACAAARSVAEADGTAARFNPLFLHANVGLGKTHLLQAIAWG 310

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPV----------LLEDIDLLDFNDTQLF-------- 127
             +R++    +  + +  +      +           L DIDLL  +D Q          
Sbjct: 311 ASARNSGIKILYLTAEYFMWRFASAIRDQSALSFKESLRDIDLLLIDDMQFLQGKSIQQE 370

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N++      +++ A   P         + SRL+    +++  PD +  + ++   
Sbjct: 371 FCHLLNALIDSAKQVVVAADRPPAQLESLDARVRSRLQGGVALEVGSPDIEMRKAMLELR 430

Query: 186 F--ADR---QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +  A R    + I   +  Y+  R+  S    E   +++
Sbjct: 431 YREARREDPNLAIPSDILDYVATRVASSGRDLEGAFNQL 469


>gi|157165209|ref|YP_001465925.1| chromosomal replication initiation protein [Campylobacter concisus
           13826]
 gi|166201870|sp|A7ZAW7|DNAA_CAMC1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|112801714|gb|EAT99058.1| chromosomal replication initiator protein DnaA [Campylobacter
           concisus 13826]
          Length = 436

 Score = 94.1 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 84/232 (36%), Gaps = 24/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91
             G + ++ +   + + A     +    P      + + G +G GK+ L     +     
Sbjct: 102 NPGYTFENFVCGDSNQFAFLNAKAVADKPGVLYNPLFIYGTTGLGKTHLLQSVGNYCLDQ 161

Query: 92  RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130
               I  + D  +ID    +                  L++D+  L   D    + F+  
Sbjct: 162 GKVVICVTSDQFMIDFTTHLNSHSMTKFREKYRNCDVLLIDDVQFLGKTDKIQEEFFNTF 221

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +      ++MT+             L SR + + +  I+ P+ D    +I+K     +
Sbjct: 222 NELIAKKGQIVMTSDRPAKILKGFDERLKSRFEQSIMADITPPELDTKIAIIIKKCEFDK 281

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I+++K++  YI   M  ++   E  +  ++  A    + IT   A   LK+ 
Sbjct: 282 IYLNKEVIDYIATNMGDNIREIEGAIINLNAYASLMRVEITLEFAKNTLKDL 333


>gi|116070875|ref|ZP_01468144.1| chromosomal replication initiation protein [Synechococcus sp.
           BL107]
 gi|116066280|gb|EAU72037.1| chromosomal replication initiation protein [Synechococcus sp.
           BL107]
          Length = 474

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 84/260 (32%), Gaps = 32/260 (12%)

Query: 14  DKQKNDQPKNKEEQ---LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---V 67
           ++ +   P     Q   L           R   +V      A     +    P R    +
Sbjct: 115 EQPREAAPARPSGQRRYLP-GLNPRYVFGR--FVVGQNSRMAHAAALAVAEAPGREFNPL 171

Query: 68  ILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT--------------- 107
            + G  G GK+ L              +       ++  + LI                 
Sbjct: 172 FICGGVGLGKTHLMQAIGHYRLEIDPGARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRA 231

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI  ++  +    + FH  N++H+    +++ +   P         L SR + 
Sbjct: 232 ADLILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQM 291

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             +  I  PD +    ++ K     ++ + + L  YI  R   ++   E  + +    A 
Sbjct: 292 GLIADIQSPDLETRMAILQKKAEQERMALPRDLIQYIAGRFTSNIRELEGALTRAVAFAS 351

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G+ +T    A +L  T Q
Sbjct: 352 ITGLPMTVESVAPMLDPTGQ 371


>gi|255659821|ref|ZP_05405230.1| ATPase [Mitsuokella multacida DSM 20544]
 gi|260847896|gb|EEX67903.1| ATPase [Mitsuokella multacida DSM 20544]
          Length = 490

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 83/235 (35%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               + +  +  S+   A     +    P +V     + G  G GK+ L +         
Sbjct: 154 NPKYTFETFVTGSSNRFAHAAAMAVAESPGKVYNPFFMYGGVGLGKTHLMHAIGNRVLQN 213

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF---NDTQLFH 128
                     S++  +     I +    +     + +   +++DI  L        + F+
Sbjct: 214 HPEMRVLYVSSEQFTNEIIRAIQEGKAELFRQKYRTIDVLMVDDIQFLSGKQSTQEEFFN 273

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  D  +++++   P      L D L SR +   +  I  PD +    ++     
Sbjct: 274 TFNALHVADKQIILSSDRPPREVQ-KLEDRLRSRFEGGLITDIQAPDLETRIAILKNKAL 332

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              + +   +  +I  R++ ++   E  + ++   A      +T  + AE LK+ 
Sbjct: 333 LDHVDVPNDVLMFIANRIDSNIRELEGALTRVVAYASLINKPVTTDVVAEALKDV 387


>gi|183602668|ref|ZP_02964032.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682500|ref|YP_002468883.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190067|ref|YP_002967461.1| ATPase for DNA replication initiation [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195473|ref|YP_002969028.1| ATPase for DNA replication initiation [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|254777887|sp|B8DV06|DNAA_BIFA0 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|183218086|gb|EDT88733.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620150|gb|ACL28307.1| chromosomal replication initiator protein DnaA [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248459|gb|ACS45399.1| ATPase for DNA replication initiation [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240250027|gb|ACS46966.1| ATPase for DNA replication initiation [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295793054|gb|ADG32589.1| ATPase for DNA replication initiation [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 583

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 84/236 (35%), Gaps = 34/236 (14%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANI---WSDKSRSTRF 93
            D  +   +   A  +  +      R    + + G SG GK+ L +    ++ +++  R 
Sbjct: 243 FDTFIQGDSNRFARTVALAVAEGSGRDYNPLCIYGGSGLGKTHLLHAIGNYAVQNQKPRP 302

Query: 94  SNIAKSLDSILIDTRKPV-------------------------LLEDIDLLDFND---TQ 125
             +  + +    D  + +                         L++DI  L        Q
Sbjct: 303 RVLYVTSEEFTNDFIESIRTSGQDNEDPAMEKFYRKYREVDVLLIDDIQFLGGKRGILEQ 362

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  NS++Q +  +++ +   P +       L SR +    V +  P+ +    ++  +
Sbjct: 363 FFHTFNSLYQANKRIVIASDVPPHNLEDFEDRLISRFEQGITVDVKPPNLETRIAILRML 422

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                I +   +   I +R   ++   E  + ++  +A      +TR+L    L++
Sbjct: 423 AEQNHIRVPNDVLNLIAERFANNVRELEGALKRVIAMASLNHQPVTRALTERTLQD 478


>gi|319746185|gb|EFV98455.1| DNA-directed DNA replication initiator protein [Streptococcus
           agalactiae ATCC 13813]
          Length = 469

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 77/239 (32%), Gaps = 29/239 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKS--- 88
               +  + +       AV    +    P      + + G  G GK+ L N   ++    
Sbjct: 131 KEKYTFANFVQGDENRWAVSASIAVADSPGTTYNPLFIWGGPGLGKTHLLNAIGNQVLRD 190

Query: 89  --RSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLD-----FNDTQL 126
              +      A++  +  +                    +L++DI  L          + 
Sbjct: 191 NPNARVLYITAENFINEFVSHIRLDSMEELKEKFRNLDLLLIDDIQSLAKKTLGGTQEEF 250

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N++H  D  +++T+   P         L +R      V I+ PD +    ++    
Sbjct: 251 FNTFNALHTNDKQIVLTSDRNPNQLNDLEERLVTRFSWGLPVNITPPDFETRVAILTNKI 310

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKETQQ 244
            +      +    Y+    + ++   E  +  +  +A       IT  +AAE ++  + 
Sbjct: 311 QEYPYDFPQDTIEYLAGEFDSNVRELEGALKNISLVADFKHAKTITVDIAAEAIRARKN 369


>gi|293374955|ref|ZP_06621251.1| chromosomal replication initiator protein DnaA [Turicibacter
           sanguinis PC909]
 gi|325844340|ref|ZP_08168116.1| chromosomal replication initiator protein DnaA [Turicibacter sp.
           HGF1]
 gi|292646432|gb|EFF64446.1| chromosomal replication initiator protein DnaA [Turicibacter
           sanguinis PC909]
 gi|325489207|gb|EGC91589.1| chromosomal replication initiator protein DnaA [Turicibacter sp.
           HGF1]
          Length = 448

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 92/282 (32%), Gaps = 44/282 (15%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFP------RCLGISRDDLLVHSAIEQAVR 54
           +  +  DY     D+Q  D  K        + P           + D  +   +   A  
Sbjct: 77  VKFITNDY--VKNDQQAFDLTKPDP-----NLPKYYRGNLNTTYTFDRFVAGKSNRLAYM 129

Query: 55  LIDSWPSWPSRV---VILVGPSGSGKSCLANI---------------------WSDKSRS 90
           +       P  V   + + G  G GK+ L                        + D  R 
Sbjct: 130 IALQVAERPGEVANPLYIFGGVGLGKTHLMQAIGNFILDDNPSSRILYCTSEKFIDDYRH 189

Query: 91  TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTF 147
               N  ++           +L++DI  L   +   T+ F+  N ++  +  +++T+   
Sbjct: 190 ATLDNNFEAFKEKY-RNIDVLLIDDIQFLSKKEQTQTEFFNTFNELYNNNKQIVITSDRP 248

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI---DKKLAAYIVQR 204
                  +  L SR +      I +PD     +++ K  A   I +    +++  +I  +
Sbjct: 249 ASDLKDIMDRLTSRFEWGLQADIQIPDTQTRIEIMKKKLAGENINLDEFPEEVLEFIASK 308

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              ++   E  + ++   A       T  LA E L++  + +
Sbjct: 309 FNSNVRTLEGALKRLIFYATINNSDFTIELANEALRDLFKAE 350


>gi|22536186|ref|NP_687037.1| chromosomal replication initiation protein [Streptococcus
           agalactiae 2603V/R]
 gi|25010076|ref|NP_734471.1| chromosomal replication initiation protein [Streptococcus
           agalactiae NEM316]
 gi|76787564|ref|YP_328728.1| chromosomal replication initiation protein [Streptococcus
           agalactiae A909]
 gi|76797986|ref|ZP_00780245.1| chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae 18RS21]
 gi|77405627|ref|ZP_00782716.1| chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae H36B]
 gi|77407687|ref|ZP_00784442.1| chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae COH1]
 gi|77411769|ref|ZP_00788105.1| chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae CJB111]
 gi|77413657|ref|ZP_00789842.1| chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae 515]
 gi|61212814|sp|Q8E2I7|DNAA_STRA5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61212815|sp|Q8E7Z4|DNAA_STRA3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123744534|sp|Q3K425|DNAA_STRA1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|22533003|gb|AAM98909.1|AE014191_1 chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae 2603V/R]
 gi|23094427|emb|CAD45646.1| replication initiation protein DnaA [Streptococcus agalactiae
           NEM316]
 gi|76562621|gb|ABA45205.1| chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae A909]
 gi|76586666|gb|EAO63165.1| chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae 18RS21]
 gi|77160312|gb|EAO71438.1| chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae 515]
 gi|77162160|gb|EAO73135.1| chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae CJB111]
 gi|77173686|gb|EAO76800.1| chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae COH1]
 gi|77175771|gb|EAO78551.1| chromosomal replication initiator protein DnaA [Streptococcus
           agalactiae H36B]
          Length = 453

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 77/239 (32%), Gaps = 29/239 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKS--- 88
               +  + +       AV    +    P      + + G  G GK+ L N   ++    
Sbjct: 115 KEKYTFANFVQGDENRWAVSASIAVADSPGTTYNPLFIWGGPGLGKTHLLNAIGNQVLRD 174

Query: 89  --RSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLD-----FNDTQL 126
              +      A++  +  +                    +L++DI  L          + 
Sbjct: 175 NPNARVLYITAENFINEFVSHIRLDSMEELKEKFRNLDLLLIDDIQSLAKKTLGGTQEEF 234

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N++H  D  +++T+   P         L +R      V I+ PD +    ++    
Sbjct: 235 FNTFNALHTNDKQIVLTSDRNPNQLNDLEERLVTRFSWGLPVNITPPDFETRVAILTNKI 294

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKETQQ 244
            +      +    Y+    + ++   E  +  +  +A       IT  +AAE ++  + 
Sbjct: 295 QEYPYDFPQDTIEYLAGEFDSNVRELEGALKNISLVADFKHAKTITVDIAAEAIRARKN 353


>gi|42525520|ref|NP_970618.1| chromosomal replication initiation protein [Treponema denticola
           ATCC 35405]
 gi|14194665|sp|O87546|DNAA_TREDE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|3676692|gb|AAC62071.1| chromosomal replication initiator protein [Treponema denticola]
 gi|41815531|gb|AAS10499.1| chromosomal replication initiator protein DnaA [Treponema denticola
           ATCC 35405]
          Length = 469

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 79/274 (28%), Gaps = 49/274 (17%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVG 71
           K+K+ + +    Q           + +D +V         A   + + P       ++ G
Sbjct: 114 KKKSVKTEGGRGQHP-DL--RPEYNFEDFVVGPNNNFGVNAAIAVSTNPGSAYNPFLIYG 170

Query: 72  PSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSIL--------------IDTRKPVL 112
             G GK+ L       IW        +       +  +                    +L
Sbjct: 171 GVGLGKTHLMQAIGNKIWDTTKLKVIYVTAENFTNEFVECVQKKMMPAFKSKYRKADVLL 230

Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI           +LFH  N +++ +  ++ T    P         L SR +    V 
Sbjct: 231 IDDIHFFQGKVETQEELFHTFNELYEKNKQIVFTCDRPPAELKNLSQRLKSRFERGLNVD 290

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM---------- 219
           +  P  +    +++K        I  +    + + +  ++   E  + K+          
Sbjct: 291 LQTPAYEIRYAILLKKMEKHSTKIPNEFIDMVAKNVSSNVRDLEAALTKLIAYTELTKKT 350

Query: 220 -----------DNLALSRGMGITRSLAAEVLKET 242
                      D    +R   +T  L    + + 
Sbjct: 351 MDEATAKNLLRDIFGSTRQRNVTIDLIQRTVADY 384


>gi|325475359|gb|EGC78544.1| chromosomal replication initiator protein dnaA [Treponema denticola
           F0402]
          Length = 469

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 78/252 (30%), Gaps = 28/252 (11%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVG 71
           K+K+ + +    Q           + +D +V         A   + + P       ++ G
Sbjct: 114 KKKSVKTEGGRGQHP-DL--RPEYNFEDFVVGPNNNFGVNAAIAVSTNPGSAYNPFLIYG 170

Query: 72  PSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSIL--------------IDTRKPVL 112
             G GK+ L       IW        +       +  +                    +L
Sbjct: 171 GVGLGKTHLMQAIGNKIWDTTKLKVIYVTAENFTNEFVECVQKKMMPAFKSKYRKADVLL 230

Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI           +LFH  N +++ +  ++ T    P         L SR +    V 
Sbjct: 231 IDDIHFFQGKVETQEELFHTFNELYEKNKQIVFTCDRPPAELKNLSQRLKSRFERGLNVD 290

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           +  P  +    +++K        I  +    + + +  ++   E  + K+          
Sbjct: 291 LQTPAYEIRYAILLKKMEKHSTKIPNEFIDMVAKNVSSNVRDLEAALTKLIAYTELTKKT 350

Query: 230 ITRSLAAEVLKE 241
           +  + A  +L++
Sbjct: 351 MDEATAKNLLRD 362


>gi|319760739|ref|YP_004124676.1| chromosomal replication initiator protein dnaa [Alicycliphilus
           denitrificans BC]
 gi|317115300|gb|ADU97788.1| chromosomal replication initiator protein DnaA [Alicycliphilus
           denitrificans BC]
          Length = 473

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 26/232 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-----WSDKS 88
            ++ D L+  +A   A          P  +   + + G  G GK+ L +       +D+ 
Sbjct: 141 ALTFDTLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVGNKLLADRP 200

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFHII 130
            +      A+   S ++ + +    +D       +DLL  +D            + F+  
Sbjct: 201 DAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAF 260

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
            ++    S ++MT+ T+P         L SR  +   V I  P+ +    +++       
Sbjct: 261 EALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAILINKARAEH 320

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + +++A ++ + +  ++   E  + K+   +      ++  LA E L++ 
Sbjct: 321 AEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 372


>gi|295398135|ref|ZP_06808184.1| DNA-directed DNA replication initiator protein [Aerococcus viridans
           ATCC 11563]
 gi|294973654|gb|EFG49432.1| DNA-directed DNA replication initiator protein [Aerococcus viridans
           ATCC 11563]
          Length = 444

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 81/235 (34%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIWSDKS--- 88
               + D+ +V    + A     +    P R    +   G  G GK+ L      +    
Sbjct: 109 NPKYTFDNFVVGEGNKMAHAAALAVAEGPGRDYNPLFFFGGVGLGKTHLMQAIGHEVLRT 168

Query: 89  --RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFH 128
              +      +++  +  I+  +                +L++DI  +        + FH
Sbjct: 169 NPNAKIKYVSSETFTNDFINAIRKNTTDAFHQEYRTVDMLLVDDIQFIGNKQSTQEEFFH 228

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N ++  +  +++T+          L D L SR K      I+ PD +    ++     
Sbjct: 229 TFNVLYNNNKHIVLTSDRDASQIP-ELEDRLVSRFKQGLSTDITPPDLETRIAILRNKAN 287

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              + I     +YI  +++ ++   E  +  +   A+     +T + AA+ L+  
Sbjct: 288 VNGLQIPDDTLSYIAGQIDSNIRELEGALTSVQAFAVMNQEDLTPNTAAKALRNY 342


>gi|300021540|ref|YP_003754151.1| chromosomal replication initiator protein DnaA [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523361|gb|ADJ21830.1| chromosomal replication initiator protein DnaA [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 506

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 83/248 (33%), Gaps = 39/248 (15%)

Query: 33  PRCLGISRDDLLVHSAIEQAVR---------LIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           P     + D  +V ++   A           L D+    P   + +    G GKS L   
Sbjct: 162 PLDPRYTFDSFVVGASNRMAHAGATQVAETVLTDAPGYNP---LYIHSAVGLGKSHLLQA 218

Query: 84  WS-----DKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFN- 122
            +         +      A+      ++  +                +L++D++ L    
Sbjct: 219 IAWEVKRRAPSAQVLYLTAERFRYQFVEALRSSDPLAFKERFRNIHMLLIDDLEFLQGER 278

Query: 123 -DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
            + +  HIIN++      +++ +   P         + SRL+   V ++   D +   KV
Sbjct: 279 TEQEFDHIINALLDGGKQVVVASARAPNQIERLNERMRSRLQRGLVTELIPLDHELRLKV 338

Query: 182 I-----VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
           +      K  AD    + + +   +  R+  +    E  + ++          IT  +A 
Sbjct: 339 LEKRLGEKRAADPSFTLSRDVVDLLAMRLTENGRELEGAITRLYATWQYMRTPITLDIAE 398

Query: 237 EVLKETQQ 244
            V+++  Q
Sbjct: 399 TVIRDLVQ 406


>gi|61212565|sp|Q6ARL8|DNAA_DESPS RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 479

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 88/238 (36%), Gaps = 27/238 (11%)

Query: 36  LGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN---------- 82
              + D+ +V  +    E A R I +        + +   +G GKS L +          
Sbjct: 146 PRYTFDEFMVGQSNILAESACRAISADADTVGPCLYINSGTGLGKSHLTHAVAHHLLSNS 205

Query: 83  -------IWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDF---NDTQLFH 128
                  + + +  +     I  +   +      +    +L+EDI  L        +L  
Sbjct: 206 PMTRMHYVTAQQFSAEMVHGIKNNSMDMFKKKYQEDCDILLVEDIHTLKGKKKTQEELNE 265

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           +++++ +    +L+TA   P        +  SR+ A  +  I  PD     +++ +  A 
Sbjct: 266 VLDTLVKSGKRVLLTANAAPRELAGIDGEFRSRMSAGLITSIQAPDIKTRSRIVERKAAG 325

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           +++  D+ + +Y+ Q +   +   E  +  +   A   G  I  +L  EV+     C+
Sbjct: 326 QRLSFDEDMTSYLAQNVRGDVRQIESAITAIGARARLMGGYIDMNLIREVVGSVVGCN 383


>gi|118602061|ref|YP_903276.1| chromosomal replication initiator protein DnaA [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567000|gb|ABL01805.1| chromosomal replication initiator protein DnaA [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 430

 Score = 94.1 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 84/216 (38%), Gaps = 29/216 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
           P     + D+L++ +A + A     ++ ++  + P    I+ G SG GK+ L       S
Sbjct: 87  PLFEDYTFDNLILGNANQMAYGATKQIAENIKTSPYNPFIIYGGSGLGKTHLMQAAGHLS 146

Query: 89  RSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQ 125
           +                  NI  SL    I+       +   +L++DI L+   +    +
Sbjct: 147 KEKNQNIKVIYVPLMDFVRNITSSLRHNTIENIKTFYQSADLLLVDDIHLIAGKEKSQEE 206

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FHI N +      ++ T    P +       L +R      + ++ P+ +    +++K 
Sbjct: 207 FFHIFNFLFNGKKQIIFTCDQSPKNIKSLENRLKTRFSQGLNLHLTPPELEMRAAILLKK 266

Query: 186 FADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKM 219
             +++I I   +  A +I   +  ++   E  + K+
Sbjct: 267 SQNKRININLTEDTALFIATHIASNVRDLEGALLKL 302


>gi|332186224|ref|ZP_08387969.1| chromosomal replication initiator protein DnaA [Sphingomonas sp.
           S17]
 gi|332013592|gb|EGI55652.1| chromosomal replication initiator protein DnaA [Sphingomonas sp.
           S17]
          Length = 519

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 31/243 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAV--RLIDSWPSWP-SRVVILVGPSGSGKSCLANIWSDKS- 88
           P    ++ D  +V S+   A    L  + P  P    + L G +G GK+ L +  +    
Sbjct: 182 PLDPRLTFDRFVVDSSNRVAFNAALSLAEPGLPRFSPLFLHGGTGQGKTHLMHAIAHAFL 241

Query: 89  ----RSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQL 126
                +      A+      +   +                +L++D+  +   D    + 
Sbjct: 242 ESHPEAVVLCMSAERFMFDFVAAMRARDTHSFKTRLRSADLLLIDDLQFIAGKDSTQEEF 301

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH +N +      L+++A   P S     P +  RL A  V  I  PD      ++ +  
Sbjct: 302 FHTVNELVSAGKRLVISADRSPQSLDGMEPRIIGRLGAGLVADIKAPDLTLRRTILNRKV 361

Query: 187 AD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA----EVLKE 241
           +D   I +   +   +  R+  ++   E  ++++   A   G  I    A     EVL+ 
Sbjct: 362 SDLPDIVVPNDVLDLLASRIRGNIRELEGALNRVVAYAQLTGEKIDLEFAVATLGEVLRG 421

Query: 242 TQQ 244
            Q+
Sbjct: 422 AQR 424


>gi|262281645|ref|ZP_06059414.1| chromosomal replication initiator protein DnaA [Streptococcus sp.
           2_1_36FAA]
 gi|262262099|gb|EEY80796.1| chromosomal replication initiator protein DnaA [Streptococcus sp.
           2_1_36FAA]
          Length = 450

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 95/280 (33%), Gaps = 40/280 (14%)

Query: 4   MKEDYSFFVPDKQKNDQPKNKEEQL---------FFSFPRCLGISRDDLLVHSAIEQAVR 54
           +   Y F   D+ K +      +Q            +       + ++ +     + A  
Sbjct: 74  ITALYVFETEDRVKEEPVYLTSQQPDLTEKKKSPPLATGLKAKYTFENFVQGDGNQWAKA 133

Query: 55  LIDSWPS---WPSRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILID 106
              +           + + G  G GK+ L N   ++       +      A++  +  ++
Sbjct: 134 AALAVADNLGGIYNPLFIYGGPGLGKTHLLNAIGNEVLENTPDARIKYVPAETFINDFLE 193

Query: 107 ---------------TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFP 148
                          +   +L++DI  L        + F+  N++H  +  +++T+   P
Sbjct: 194 HLRLGEMDSFKKIYRSLDLLLIDDIQALSKKVSTQEEFFNTFNALHGENKQIVLTSDRSP 253

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-- 206
                    L +R K      I+ P+ +    ++     +  +    +   Y+  + +  
Sbjct: 254 DYLENLEERLVTRFKWGLTSDITPPNFETRIAILRNKIEEFDLIFPNETIEYLAGQFDSN 313

Query: 207 -RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            R L  A K ++ +   ++ +   IT  +AAE ++  +Q 
Sbjct: 314 VRDLEGALKDINLL--ASMKQIKEITIDIAAEAIRSRKQA 351


>gi|148239038|ref|YP_001224425.1| chromosomal replication initiation protein [Synechococcus sp. WH
           7803]
 gi|166215365|sp|A5GJL3|DNAA_SYNPW RecName: Full=Chromosomal replication initiator protein DnaA
 gi|147847577|emb|CAK23128.1| Chromosomal replication initiator protein dnaA [Synechococcus sp.
           WH 7803]
          Length = 464

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 78/228 (34%), Gaps = 26/228 (11%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-------KSRSTR 92
            +V      A     +    P R    + + G  G GK+ L             ++R   
Sbjct: 134 FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLGKTHLMQAIGHYRLEIDPEARVFY 193

Query: 93  FSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQLFHIINSIHQY 136
            S    + D I+                   +L++DI  ++  +    + FH  N++H+ 
Sbjct: 194 VSTETFTNDLIVAIRRDGMQAFRDRYRAADLILVDDIQFIEGKEYTQEEFFHTFNALHEA 253

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              +++ +   P         L SR     +  I  PD +    ++ K     ++ + + 
Sbjct: 254 GRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAILQKKAEQERVALPRD 313

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           L  YI  R   ++   E  + +    A   GM +T    A +L  + Q
Sbjct: 314 LIQYISGRFTSNIRELEGALTRAVAFASITGMPMTVESVAPMLDPSGQ 361


>gi|158422638|ref|YP_001523930.1| chromosomal replication initiation protein [Azorhizobium
           caulinodans ORS 571]
 gi|158329527|dbj|BAF87012.1| chromosomal replication initiator protein [Azorhizobium caulinodans
           ORS 571]
          Length = 444

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 85/244 (34%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAI----EQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLANI--W 84
           P    ++ +  +V  +       A ++ ++ P        + +    G GK+ L     W
Sbjct: 102 PLDARLTFETFVVGKSNTLAHAAARQVAEAVPGAAPLFNPLYMHAAVGLGKTHLLQAVAW 161

Query: 85  SDKSRSTRFSNIAKSLD----SILIDTRKPVLLED----IDLLDFNDTQLF--------- 127
           +  +R  R   +            + +   +  +D    ID L  +D Q           
Sbjct: 162 AGAARGRRVVYLTAERFMYGFVAALKSHAAIAFKDALRSIDTLVIDDLQFLTGKNMQQEF 221

Query: 128 -HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            H +N++      +++ A   P         + SRL    VV+++  ++D   +++    
Sbjct: 222 CHTLNALMDAGRQVVVAADRPPSELDALDDRVRSRLAGGLVVELAPLEEDLRAQILKTRS 281

Query: 187 -----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                  R   +   +  ++ + +  S    +  ++K+  +    G  +T  +A   +K+
Sbjct: 282 VSLSEQHRGFAVPSAVLEFLARHVGTSGRDLDGALNKLLAVNKLTGEPVTLEMAETAVKD 341

Query: 242 TQQC 245
             + 
Sbjct: 342 LVRP 345


>gi|315497052|ref|YP_004085856.1| chromosomal replication initiator protein dnaa [Asticcacaulis
           excentricus CB 48]
 gi|315415064|gb|ADU11705.1| chromosomal replication initiator protein DnaA [Asticcacaulis
           excentricus CB 48]
          Length = 473

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 84/238 (35%), Gaps = 32/238 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
              ++ +  +     E A  +   + +W       V   GP G GK+ L N  + ++++ 
Sbjct: 132 QERLTFETFVPGRGNEFAYTMSRQVATWADGHFNPVFFHGPYGYGKTHLLNAIAWEAKAR 191

Query: 92  RFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF---NDTQLFH 128
           R       L +                      + +   +L++D+  +     +  +LFH
Sbjct: 192 RQDAKVVYLTAEKFTSTFVKSLQDRSTAAFKDELRSADLLLIDDVHFIGGKTSSQEELFH 251

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK---- 184
            + ++ + +  ++ TA   P         L S L +  V  + + D      +I +    
Sbjct: 252 TLTALLENNKRVVFTADRPPSHLNEIEARLRSHLSSGLVCALDVADQSLRMGIIERKLDQ 311

Query: 185 MFADRQIF--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +     +       +  ++  R+  S+   E  V+ +   A +R   +T   A  +L+
Sbjct: 312 LAKRLGVAQKPQHDVLQFLADRVPGSIRELEGAVNTLAASAGARLGSLTLDEAMALLQ 369


>gi|124516518|gb|EAY58026.1| Chromosomal replication initiator protein (DnaA) [Leptospirillum
           rubarum]
 gi|206603405|gb|EDZ39885.1| Chromosomal replication initiator protein (DnaA) ORIGIN
           [Leptospirillum sp. Group II '5-way CG']
          Length = 465

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 85/235 (36%), Gaps = 26/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
                 ++ +V    + A     +  + PS+      L G  G GK+ L +   +   + 
Sbjct: 129 NPRYFFENYVVGVCNQFAHAAAFAIANNPSKAYNPFYLFGSVGLGKTHLVSAIGNCMIAL 188

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
                 +  + +S L +    +                  +++D+  L   +    +LF+
Sbjct: 189 YPSLKVLYITTESFLNEMVSAIKFNKMNEFRERYRKIDVLIMDDVQFLSGKERTQEELFY 248

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++++   P         L SR     +  I +PD +   +++    A 
Sbjct: 249 TFNALYENGKQIILSSDCMPNDIPTLEGRLKSRFGWGLIADIQIPDFETKVEILKGKMAQ 308

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            ++ +   +  ++   ++ ++   E  + ++       G  IT  +A  +L +  
Sbjct: 309 EKVDLPMDVVYFLANSIKSNIRELEGAMIRLGAYGNLMGKPITIEVARNLLSDLM 363


>gi|329942717|ref|ZP_08291496.1| chromosomal replication initiator protein DnaA [Chlamydophila
           psittaci Cal10]
 gi|332287313|ref|YP_004422214.1| chromosomal replication initiator protein [Chlamydophila psittaci
           6BC]
 gi|313847897|emb|CBY16892.1| chromosomal replication initiator protein [Chlamydophila psittaci
           RD1]
 gi|325506504|gb|ADZ18142.1| chromosomal replication initiator protein [Chlamydophila psittaci
           6BC]
 gi|328814977|gb|EGF84966.1| chromosomal replication initiator protein DnaA [Chlamydophila
           psittaci Cal10]
 gi|328914557|gb|AEB55390.1| chromosomal replication initiator protein DnaA [Chlamydophila
           psittaci 6BC]
          Length = 450

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 93/260 (35%), Gaps = 35/260 (13%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVIL 69
           P +Q+    +  EE   F          D+ +   + +    A   I   P      + +
Sbjct: 95  PREQQETPTETFEESKDFELKLNTAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSYNPLFI 154

Query: 70  VGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILID-------TRK 109
            G  G GK+ L +      R                 +++ + L    ID       +  
Sbjct: 155 HGGVGLGKTHLLHAVGHYVREHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRSLD 214

Query: 110 PVLLEDI----DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
            +L++DI    +  +F +        +IN     +  +++T+   P    +    + +R+
Sbjct: 215 LLLVDDIQFLQNRQNFEEEFCNTFETLINL----NKQIVITSDKPPGQLKLS-ERIIARM 269

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   V  + +PD +    ++      + + I  ++A YI   +  ++   E  ++K+   
Sbjct: 270 EWGLVAHVGIPDLETRVAILQHKAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLTAY 329

Query: 223 ALSRGMGITRSLAAEVLKET 242
               G  +T S+  + LKE 
Sbjct: 330 CRLFGKTLTESIVRDTLKEL 349


>gi|260890880|ref|ZP_05902143.1| DNA replication initiator protein, ATPase [Leptotrichia hofstadii
           F0254]
 gi|260859433|gb|EEX73933.1| DNA replication initiator protein, ATPase [Leptotrichia hofstadii
           F0254]
          Length = 451

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 31/242 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS 85
            F          D+ +V    + A     +  + P+ V   + + G SG GK+ L     
Sbjct: 103 VFHTGLNPKHRLDNFVVGENSKLAYNACLAVVNNPTPVYNPLFIYGSSGLGKTHLMQAVG 162

Query: 86  DK------SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDID-------- 117
           +       S+   +S   +  +                       +LL+DI         
Sbjct: 163 NAILENNPSKRVYYSTSEEFSNEFFKVLNSGRIQHFRDTFRALDVLLLDDIQFFEKVFGR 222

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
                + + FH  N + +    ++M +   P         L SR  +   V+I  P  + 
Sbjct: 223 GEGTVEEEFFHTFNKLQELGKQIIMISDKSPKEIKNLSKRLESRFLSGLTVEIQSPGYET 282

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
              ++  M   + I ID  +  YI   ++ ++   E  +  ++  A      IT  L  E
Sbjct: 283 RMMILKNMAKTQGIEIDDSILEYISDSLDTNVRELEGTLTNLNARAKLLNEQITMQLVQE 342

Query: 238 VL 239
           +L
Sbjct: 343 ML 344


>gi|206603335|gb|EDZ39815.1| Chromosomal replication initiator protein (DnaA) ORIGIN
           [Leptospirillum sp. Group II '5-way CG']
          Length = 465

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 85/235 (36%), Gaps = 26/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
                 ++ +V    + A     +  + PS+      L G  G GK+ L +   +   + 
Sbjct: 129 NPRYFFENYVVGVCNQFAHAAAFAIANNPSKAYNPFYLFGSVGLGKTHLVSAIGNCMVAL 188

Query: 92  R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128
                 +  + +S L +    +                  +++D+  L   +    +LF+
Sbjct: 189 YPSLKVLYITTESFLNEMVSAIKFNKMNEFRERYRKIDVLIMDDVQFLSGKERTQEELFY 248

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++++   P         L SR     +  I +PD +   +++    A 
Sbjct: 249 TFNALYENGKQIILSSDCMPNDIPTLEGRLKSRFGWGLIADIQIPDFETKVEILKGKMAQ 308

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            ++ +   +  ++   ++ ++   E  + ++       G  IT  +A  +L +  
Sbjct: 309 EKVDLPMDVVYFLANSIKSNIRELEGAMIRLGAYGNLMGKPITIEVARNLLSDLM 363


>gi|227533506|ref|ZP_03963555.1| DNA-directed DNA replication initiator protein [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239630805|ref|ZP_04673836.1| DNA replication ATPase initiation [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065126|ref|YP_003787149.1| DNA replication ATPase initiation [Lactobacillus casei str. Zhang]
 gi|227188835|gb|EEI68902.1| DNA-directed DNA replication initiator protein [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239527088|gb|EEQ66089.1| DNA replication ATPase initiation [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300437533|gb|ADK17299.1| DNA replication ATPase initiation [Lactobacillus casei str. Zhang]
          Length = 449

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 28/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++    + A     +    P      + + G  G GK+ L     +     
Sbjct: 112 NPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLGN 171

Query: 92  RFSNIAKSLDSILIDTR--------------------KPVLLEDI----DLLDFNDTQLF 127
             +   K + S                            +L++DI    D     +   F
Sbjct: 172 NPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEE-FF 230

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++++    +++T+   P         L SR      V ++ PD +    ++     
Sbjct: 231 HTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKAD 290

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              + I     +YI  ++E ++   E  + ++   +  +   IT SLAA+ LK  +  D
Sbjct: 291 AEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDD 349


>gi|89898446|ref|YP_515556.1| chromosomal replication initiation protein [Chlamydophila felis
           Fe/C-56]
 gi|89331818|dbj|BAE81411.1| chromosomal replication initiator protein [Chlamydophila felis
           Fe/C-56]
          Length = 450

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 92/262 (35%), Gaps = 35/262 (13%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVV 67
             P +QK    +  E    F          D+ +   + +    A   I   P      +
Sbjct: 93  VAPREQKESPAETFEGSKDFELKLNTAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSYNPL 152

Query: 68  ILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSLDSILID-------T 107
            + G  G GK+ L +                  +     +++ + L    ID       +
Sbjct: 153 FIHGGVGLGKTHLLHAVGHYVKEHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRS 212

Query: 108 RKPVLLEDI----DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +L++DI    +  +F +        +IN     +  +++T+   P    +    + +
Sbjct: 213 LDLLLVDDIQFLQNRQNFEEEFCNTFETLINL----NKQIVITSDKPPGQLKLS-ERIIA 267

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R++   V  + +PD +    ++      + + I  ++A YI   +  ++   E  ++K+ 
Sbjct: 268 RMEWGLVAHVGIPDLETRVAILQHKAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLT 327

Query: 221 NLALSRGMGITRSLAAEVLKET 242
                 G  +T S+  + LKE 
Sbjct: 328 AYCRLFGKTLTESIVRDTLKEL 349


>gi|317969547|ref|ZP_07970937.1| chromosomal replication initiation protein [Synechococcus sp.
           CB0205]
          Length = 468

 Score = 93.7 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 82/251 (32%), Gaps = 28/251 (11%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72
           Q+         +L          +R   +V      A     +    P R    + + G 
Sbjct: 112 QQRTATGEAPRKLAPGLNPRYVFNR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGG 169

Query: 73  SGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVL 112
            G GK+ L             ++R    S    + D I                    +L
Sbjct: 170 VGLGKTHLMQAIGHYRLEIDPEARVAYVSTETFTNDLIQAIRKDGMQKFRDRYRAADLIL 229

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  ++  +    + FH  N++H+    +++ +   P         L SR     +  
Sbjct: 230 VDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIAD 289

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  PD +    ++ K     ++ + + L  Y+  R   ++   E  + +    A   G+ 
Sbjct: 290 IQTPDLETRMAILHKKAEHERVSLPRDLIQYLAGRFTSNIRELEGALTRAVAFASITGLP 349

Query: 230 ITRSLAAEVLK 240
           +T    A +L+
Sbjct: 350 MTVESVAPMLE 360


>gi|322386432|ref|ZP_08060061.1| DNA-directed DNA replication initiator protein [Streptococcus
           cristatus ATCC 51100]
 gi|321269518|gb|EFX52449.1| DNA-directed DNA replication initiator protein [Streptococcus
           cristatus ATCC 51100]
          Length = 451

 Score = 93.3 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 88/273 (32%), Gaps = 32/273 (11%)

Query: 3   LMKEDYSFFVPDKQKNDQPK--NKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLI 56
             +  +      + +    K   +              + D+ +           A+ + 
Sbjct: 80  FEEAGHDLVSKYQLEEQAEKTPFRPSLPPIDTGLKAKYTFDNFVQGDGNIWAKAAALAVS 139

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI------------- 103
           ++  +     + + G  G GK+ L N   ++          K + +              
Sbjct: 140 ENLAT-TYNPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLG 198

Query: 104 -------LIDTRKPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
                  +  +   +L++DI  L         + F+  N++H  +  +++T+   P    
Sbjct: 199 DMDNFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGDNKQIVLTSDRSPDHLD 258

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                L +R K      I+ PD +    ++     +           Y+  + + ++   
Sbjct: 259 NLEERLVTRFKWGLTQNITPPDFETRIAILRNKIENLDYIFPNDTLEYLAGQFDSNVRDL 318

Query: 213 EKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
           E  ++ +  +A  R    IT  +AAE ++  +Q
Sbjct: 319 EGALNDITLIARVRNLKEITIDIAAEAIRARKQ 351


>gi|88807751|ref|ZP_01123263.1| chromosomal replication initiation protein [Synechococcus sp. WH
           7805]
 gi|88788965|gb|EAR20120.1| chromosomal replication initiation protein [Synechococcus sp. WH
           7805]
          Length = 464

 Score = 93.3 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 86/258 (33%), Gaps = 29/258 (11%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69
           P  +   +      +L          +R   +V      A     +    P R    + +
Sbjct: 107 PTVEALPKASKAPRRLP-GLNMRYVFNR--FVVGPNSRMAHAAALAVAEAPGREFNPLFI 163

Query: 70  VGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRK 109
            G  G GK+ L             ++R    S  + + D IL                  
Sbjct: 164 CGGVGLGKTHLMQAIGHYRLEIDPEARVFYVSTESFTNDLILAIRRDGMQAFRDRYRAAD 223

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI  ++  +    + FH  N++H+    +++ +   P         L SR     
Sbjct: 224 LILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGL 283

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  I  PD +    ++ K     ++ + + L  YI  R   ++   E  + +    A   
Sbjct: 284 IADIQAPDLETRMAILQKKAEQERVALPRDLIQYISGRFTSNIRELEGALTRAVAFASIT 343

Query: 227 GMGITRSLAAEVLKETQQ 244
           G+ +T    A +L  + Q
Sbjct: 344 GLPMTVESVAPMLDPSGQ 361


>gi|183219428|ref|YP_001837424.1| chromosomal replication initiator protein DnaA [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189909574|ref|YP_001961129.1| chromosomal replication initiator protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|226735824|sp|B0S907|DNAA_LEPBA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735825|sp|B0SK31|DNAA_LEPBP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|167774250|gb|ABZ92551.1| Chromosomal replication initiator protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777850|gb|ABZ96148.1| Chromosomal replication initiator protein DnaA [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 441

 Score = 93.3 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 70/214 (32%), Gaps = 30/214 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSR--- 89
                  + +   +   A     S    P +   + L GP G GK+ L +   ++ +   
Sbjct: 102 NPEYIFSNYITSDSNRIAFTAAKSVVEQPGKYNPLYLFGPVGVGKTHLLHSIGNEIKKKD 161

Query: 90  ---STRFSNIAKSLDSILI-----------------DTRKPVLLEDIDLLDFN----DTQ 125
              + R+ N    L+  +                   +   +L +DI  L+        +
Sbjct: 162 PWKTVRYVNSTSFLNEFIFTVRQNNRESLESFKIRYQSYNVLLFDDIQFLNGGAEKTQEE 221

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            F + N ++     +++ +        +    L SR        I   D +  + ++   
Sbjct: 222 FFALFNFLYDRKRQIVIASDRPSYELPLHDR-LKSRFVHGLQADIKSHDLELRKSLLKSN 280

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           F++  I     L  ++ +R+E        +V+ +
Sbjct: 281 FSEFNIPASDNLLHWLAERLEGDSRALIGIVNDL 314


>gi|313900935|ref|ZP_07834425.1| chromosomal replication initiator protein DnaA [Clostridium sp.
           HGF2]
 gi|312954355|gb|EFR36033.1| chromosomal replication initiator protein DnaA [Clostridium sp.
           HGF2]
          Length = 452

 Score = 93.3 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SDKSR 89
            + D  +V     +A     S   +P +    + + G SG GK+ L +       ++K+ 
Sbjct: 116 YTFDSFVVGKNNREAHAAALSVCYYPGKFNNPLFIFGNSGLGKTHLLHAIGNYVKANKAD 175

Query: 90  STRFSNIAKSLDSILIDTRKPVLLEDI-------DLLDFNDTQ----------LFHIINS 132
                  ++   ++LI+  K   +ED+       D L  +D Q           F++ N 
Sbjct: 176 EKVLYIYSEDFVTLLIEAMKNKTVEDVKEMICSVDYLLIDDIQRLKQSTSQEIFFNMYNK 235

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ-- 190
           +   +  +++T+   P         L SR  +   V +  P+ +  + ++ K    R   
Sbjct: 236 LISDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETAKAILQKKMEGRSDE 295

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKE 241
           I ID ++  Y+  R    +   E  ++++     L     I  + A E+ KE
Sbjct: 296 IMIDDEVLDYLATRFASDVRKLEGTLNELFFKAILYNPERIDITFAKEIFKE 347


>gi|160872042|ref|ZP_02062174.1| chromosomal replication initiator protein DnaA [Rickettsiella
           grylli]
 gi|159120841|gb|EDP46179.1| chromosomal replication initiator protein DnaA [Rickettsiella
           grylli]
          Length = 464

 Score = 93.3 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 76/189 (40%), Gaps = 23/189 (12%)

Query: 77  KSCLANIWSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDI 116
           K+ L +   +                    +++ K+L +  I+       +   +L++DI
Sbjct: 175 KTHLMHAIGNAILLKNPHAKVLYLHSERFVADMIKALQTNTINDFKTYYRSLDALLIDDI 234

Query: 117 DLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
                   +  + FH  N++ +    +++T   +P         L SRL     + I  P
Sbjct: 235 QFFAGKDRSQEEFFHTFNTLLESQQQIVLTCDRYPKEMSGVEERLKSRLGWGLTIAIEPP 294

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D +    +++      +I + +++A +I +R+  ++   E ++ ++   A   G+ IT  
Sbjct: 295 DLETRVAILISKAEQTKISLPQEVAFFIAKRIHSNVRELEGVLKRVVAYAQFTGLQITLE 354

Query: 234 LAAEVLKET 242
           L  E +K+ 
Sbjct: 355 LVREAIKDV 363


>gi|332524901|ref|ZP_08401087.1| chromosomal replication initiation protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332108196|gb|EGJ09420.1| chromosomal replication initiation protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 349

 Score = 93.3 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-------- 83
              ++ D L+   A + A          P ++   + + G  G GK+ L +         
Sbjct: 15  NPSLTFDTLVPGRANQMARTAALHVAGAPGQMYNPLFIYGGVGLGKTHLVHAVGNALLKD 74

Query: 84  ---------WSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFNDTQ---LFH 128
                     +++  S    N  +     L         +L++D+      D      F+
Sbjct: 75  RPDARVLYLHAEQFISDVVKNYQRKTFDELKAKYHSLDLLLIDDVQFFAGKDRTQEVFFN 134

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + ++MT+ T+P         L SR  A   V I  P+ +    +++K    
Sbjct: 135 TFEALLAKRAHIIMTSDTYPKGLVDIDERLTSRFDAGLTVAIEPPELEMRVAILIKKALA 194

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + + +A +I + +  ++   E  + K+   +      I  +L  + LK+ 
Sbjct: 195 EGAEMPEDVAFFIAKNVRANVRELEGALRKVLAYSRFSQKDINIALTRDALKDL 248


>gi|213865134|ref|ZP_03387253.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 282

 Score = 93.3 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   +L++DI      +    + FH  N++ + +  +++T+  +P         L SR  
Sbjct: 43  SVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFG 102

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A
Sbjct: 103 WGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANA 162

Query: 224 LSRGMGITRSLAAEVLKET 242
              G  IT     E L++ 
Sbjct: 163 NFTGRAITIDFVREALRDL 181


>gi|169351632|ref|ZP_02868570.1| hypothetical protein CLOSPI_02413 [Clostridium spiroforme DSM 1552]
 gi|169291854|gb|EDS73987.1| hypothetical protein CLOSPI_02413 [Clostridium spiroforme DSM 1552]
          Length = 448

 Score = 93.3 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 74/212 (34%), Gaps = 29/212 (13%)

Query: 37  GISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-- 91
            ++ ++ +V  +   A     L+ + P      + +    G GK+ L N   + ++    
Sbjct: 109 SLTFENFVVGGSNRMAQNAALLVSTNPGSNFNPLFIYSNPGLGKTHLLNAIGNYAKEINP 168

Query: 92  ----RFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFNDTQ---LFHII 130
               R+      +D ++   +                +L++DI  L   +      FHI 
Sbjct: 169 NLNIRYITSKDFVDEVIGAMKGKDGDEIYEKYKQLDILLIDDIQFLFNKEKSSEIFFHIF 228

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM---FA 187
           N +   +  +++T+   P         L SR  +     I  P+ +    ++ K      
Sbjct: 229 NELINNNKQIVITSDKMPEDLQGIESRLISRFNSGLSFGIDPPEFETARAILEKKIENLD 288

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +  + I + +  ++     R +   E  + ++
Sbjct: 289 NPSLIIQEDVIDFMASHYCRDIRSLEGALKRL 320


>gi|295687460|ref|YP_003591153.1| chromosomal replication initiator protein DnaA [Caulobacter segnis
           ATCC 21756]
 gi|295429363|gb|ADG08535.1| chromosomal replication initiator protein DnaA [Caulobacter segnis
           ATCC 21756]
          Length = 491

 Score = 93.3 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 32/238 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI--WSDKSR 89
               + +  +   A E A  +   I +W       V+  GP G GK+ L N   W     
Sbjct: 151 QERFTFETFVPGPANEFAHAVARRIANWADGHFNPVLFHGPYGFGKTHLLNALAWEAMRN 210

Query: 90  STRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDF---NDTQLFH 128
           +     +  + +  L                  +     ++++D+  +        +LFH
Sbjct: 211 APEKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRAADLLIIDDVHFIAGKQSTQEELFH 270

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK---- 184
            + ++ +    ++ +A   P +       L S L A  V  +   D      ++ +    
Sbjct: 271 TLTALVEEGRRVVFSADRPPSAMTEMDAHLRSHLSAGLVCGLEPADRSLRLGILERKIQT 330

Query: 185 MFADRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           + A       +   +  ++  R   S+   E  ++ +   A      +T      +L+
Sbjct: 331 LSAAHGFEPTMRPDVLQFLADRFTDSVRELEGALNTLSARAGEGLSRMTLEEVQAILR 388


>gi|171056693|ref|YP_001789042.1| chromosomal replication initiation protein [Leptothrix cholodnii
           SP-6]
 gi|226735826|sp|B1Y547|DNAA_LEPCP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|170774138|gb|ACB32277.1| chromosomal replication initiator protein DnaA [Leptothrix
           cholodnii SP-6]
          Length = 510

 Score = 93.3 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI-------- 83
              ++ D L+   A + A          P      + + G  G GK+ L +         
Sbjct: 176 NPALTFDTLVPGRANQMARTAALHVVGAPGHMYNPLFIYGGVGLGKTHLIHAVGNALIRD 235

Query: 84  ---------WSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFND---TQLFH 128
                     +++  S    N  +     L         +L++D+      D    + F+
Sbjct: 236 NPDARVLYLHAEQFISDVVRNYQRKTFDELKAKYHSLDLLLIDDVQFFAGKDRTQEEFFN 295

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    + ++MT+ T+P         L SR  A   V I  P+ +    +++K    
Sbjct: 296 AFEALLAKRAHIIMTSDTYPKGLVDIDERLTSRFDAGLTVAIEPPELEMRVAILMKKSDA 355

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + + +A ++ + +  ++   E  + K+   +      I+ +LA E LK+ 
Sbjct: 356 EGSRMPEDVAFFVAKNVRANVRELEGALRKVLAYSRFSHKEISINLAREALKDL 409


>gi|121606999|ref|YP_984328.1| chromosomal replication initiation protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120595968|gb|ABM39407.1| chromosomal replication initiator protein DnaA [Polaromonas
           naphthalenivorans CJ2]
          Length = 465

 Score = 93.3 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90
              ++ D L+  +A            S   ++   + + G  G GK+ L +   +K  + 
Sbjct: 131 NSALTFDTLIEGTANRMGRAAALHVASSLGQLYNPLFIYGGVGLGKTHLMHAIGNKLMAD 190

Query: 91  -----TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFH 128
                  + +  + +  ++                +   +L++D+  L   D    + F+
Sbjct: 191 NPAAKVLYIHAEQFVSDVVKAYQRKTFDDFKERYHSLDLLLIDDVQFLANKDRTQEEFFN 250

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    S ++MT+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 251 AFEALLTKKSHIVMTSDTYPKGLADIHERLVSRFDSGLTVAIEPPELEMRVAILIRKADA 310

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + +++A ++ + +  ++   E  + K+   +      I+  LA E L++ 
Sbjct: 311 DGAVLPEEVAFFVAKNVRSNVRELEGALRKIQAYSRFSHKEISIQLAREALRDL 364


>gi|85709428|ref|ZP_01040493.1| chromosomal replication initiator protein [Erythrobacter sp. NAP1]
 gi|85688138|gb|EAQ28142.1| chromosomal replication initiator protein [Erythrobacter sp. NAP1]
          Length = 486

 Score = 92.9 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
              ++    +   A   A        +        + L   +G GK+ L +         
Sbjct: 151 DPSLTFQAFVTGEANVLACNAAQRMAATEQPQFSPLYLKAATGQGKTHLLHAIGHAFLQA 210

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLL---DFNDTQLFH 128
             R+  F   A+      +   K                +L++DI  +        +L +
Sbjct: 211 HPRARIFYCSAERFMVEFVQALKANQMIEFKARLRSFDLLLVDDIQFIIGKASAQEELLY 270

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            I+++      L+  A   P +     P L SRL    V  I   D +  +K++    + 
Sbjct: 271 TIDALLAEGKRLVFAADRAPQALDGVEPRLLSRLSMGLVADIQAADIELRKKILESKLSR 330

Query: 189 -RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              + + + +  ++ + + R++      ++K+   A   G  ++  LA E L +
Sbjct: 331 FAPLSVPEDVIDFLARTITRNVRELVGGLNKLIAYAQLTGQEVSLQLAEEQLTD 384


>gi|157149691|ref|YP_001449323.1| chromosomal replication initiation protein [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157074485|gb|ABV09168.1| chromosomal replication initiator protein DnaA [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 450

 Score = 92.9 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 86/246 (34%), Gaps = 31/246 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS---WPSRVVILVGPSGSGKSCLANIWS 85
             +       + ++ +     + A     +           + + G  G GK+ L N   
Sbjct: 108 PLATGLKSKYTFENFVQGDGNQWAKAAALAVADNLGGIYNPLFIYGGPGLGKTHLLNAIG 167

Query: 86  DKS-----RSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF---N 122
           ++       +      A++  +  ++               +   +L++DI  L      
Sbjct: 168 NEVLENTPDARIKYVPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQALSKKVST 227

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + F+  N++H  +  +++T+   P         L +R K      I+ P+ +    ++
Sbjct: 228 QEEFFNTFNALHGENKQIVLTSDRSPDYLENLEERLVTRFKWGLTSDITPPNFETRIAIL 287

Query: 183 VKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                +  +    +   Y+  + +   R L  A K ++ +   ++ +   IT  +AAE +
Sbjct: 288 RNKIEEFDLIFPNETIEYLAGQFDSNVRDLEGALKDINLL--ASMKQIKEITIDIAAEAI 345

Query: 240 KETQQC 245
           +  +Q 
Sbjct: 346 RSRKQA 351


>gi|42521651|ref|NP_967031.1| chromosomal replication initiator protein dnaA [Bdellovibrio
           bacteriovorus HD100]
 gi|61212608|sp|Q6MRS1|DNAA_BDEBA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|39574181|emb|CAE77685.1| chromosomal replication initiator protein dnaA [Bdellovibrio
           bacteriovorus HD100]
          Length = 471

 Score = 92.9 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 88/254 (34%), Gaps = 34/254 (13%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILV 70
             +  QP++  + L         ++    +V    E A     +    P       + + 
Sbjct: 119 NIQPTQPRSSSDTL------NSELTFSTFVVGKNSEFAHAACYNVARNPGADDYNPLYIY 172

Query: 71  GPSGSGKSCLANI----WSDKSRSTRFSNIAKS-----------------LDSILIDTRK 109
           GP G GK+ L +       ++ +  R + I+                         +   
Sbjct: 173 GPVGMGKTHLLHAAGNHIREQYQHLRITYISAERFMNECISAIRRHEMDKFRQKYRENSD 232

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++D+  +   +    + FH +NS       +++ +   P           +RL+   
Sbjct: 233 ILLVDDVQFIARGEAVQEEFFHTVNSFIDSRKQVILASDRMPKDIHGLEDRSRTRLERGL 292

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  I++PD +    ++        + + + +  YI +  +RS+   E  + K+   +  +
Sbjct: 293 IADITMPDLETRIAILRYKAEKYNVRLPEDVVNYIARISKRSIRELEGNLKKVKMFSELQ 352

Query: 227 GMGITRSLAAEVLK 240
           G+ I   L   +L 
Sbjct: 353 GLPIDHELVKRILA 366


>gi|163854305|ref|YP_001628603.1| chromosomal replication initiation protein [Bordetella petrii DSM
           12804]
 gi|226735783|sp|A9HVA1|DNAA_BORPD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|163258033|emb|CAP40332.1| chromosomal replication initiator protein [Bordetella petrii]
          Length = 478

 Score = 92.9 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 85/232 (36%), Gaps = 27/232 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS---- 90
           ++ D+ +   A + A          P      + L G  G GK+ L +   +   +    
Sbjct: 146 LTFDNFVTGKANQLARAAALQVAENPGISYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 205

Query: 91  --TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFHIIN 131
              R+ +  + +  ++                +   +L++DI           + F+   
Sbjct: 206 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFE 265

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++      +++T+ T+P         L SR  +   V I  P+ +    ++++      +
Sbjct: 266 AMVAQRKQIIITSDTYPKELAGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 325

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242
            + +++A +I + +  ++   E  + K+   A   G  + +  +  E LK+ 
Sbjct: 326 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLSVDVCKEALKDL 377


>gi|157362871|ref|YP_001469638.1| chromosomal replication initiation protein [Thermotoga lettingae
           TMO]
 gi|167016906|sp|A8F346|DNAA_THELT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157313475|gb|ABV32574.1| chromosomal replication initiator protein DnaA [Thermotoga
           lettingae TMO]
          Length = 444

 Score = 92.9 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 27/229 (11%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSG 74
             D+P  K+  L  + P    ++ ++ +V      A          P +   + L G  G
Sbjct: 86  NEDEPLVKKRPLILT-PLNPILTFENFVVGPNNMFAYSTCLEVAKNPGKYNPLFLHGGVG 144

Query: 75  SGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTRK----------------PVLL 113
            GK+ L        +  +         ++   + L+D+ K                 +LL
Sbjct: 145 LGKTHLLQAIGHYLFKHEPDMRVIYLTSERFLNELVDSIKKNRVQEFRDKFRNKIDVLLL 204

Query: 114 EDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +D+  L       T+LFH  N ++     +++ +   P         L SR +   V KI
Sbjct: 205 DDVQFLIGKTGIQTELFHTFNELYNEGKQIVVCSDRDPQQLEKFQDRLVSRFQMGVVTKI 264

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             PD++   K+  KM       + + +   I +    +L      + K+
Sbjct: 265 EKPDEETCFKIAQKMAQLENAELQEDILKLISKNFSDNLRRLRGALVKL 313


>gi|62184989|ref|YP_219774.1| chromosomal replication initiation protein [Chlamydophila abortus
           S26/3]
 gi|62148056|emb|CAH63809.1| chromosomal replication initiator protein [Chlamydophila abortus
           S26/3]
          Length = 450

 Score = 92.9 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 93/262 (35%), Gaps = 35/262 (13%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVV 67
             P +Q+    +  EE   F          D+ +   + +    A   I   P      +
Sbjct: 93  VAPREQQETPIETFEESKDFELKLNTAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSYNPL 152

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILID-------T 107
            + G  G GK+ L +      R                 +++ + L    ID       +
Sbjct: 153 FIHGGVGLGKTHLLHAVGHYVREHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRS 212

Query: 108 RKPVLLEDI----DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +L++DI    +  +F +        +IN     +  +++T+   P    +    + +
Sbjct: 213 LDLLLVDDIQFLQNRQNFEEEFCNTFETLINL----NKQIVITSDKPPGQLKLS-ERIIA 267

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R++   V  + +PD +    ++      + + I  ++A YI   +  ++   E  ++K+ 
Sbjct: 268 RMEWGLVAHVGIPDLETRVAILQHKAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLT 327

Query: 221 NLALSRGMGITRSLAAEVLKET 242
                 G  +T ++  + LKE 
Sbjct: 328 AYCRLFGKTLTETIVRDTLKEL 349


>gi|261378191|ref|ZP_05982764.1| DNA replication initiator protein [Neisseria cinerea ATCC 14685]
 gi|269145660|gb|EEZ72078.1| DNA replication initiator protein [Neisseria cinerea ATCC 14685]
          Length = 515

 Score = 92.9 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 159 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 218

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 219 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 278

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 279 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 338

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 339 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMN 398

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 399 RPVIDIDLARTALQD 413


>gi|187918302|ref|YP_001883865.1| chromosomal replication initiator protein DnaA [Borrelia hermsii
           DAH]
 gi|226735782|sp|B2S0D9|DNAA_BORHD RecName: Full=Chromosomal replication initiator protein DnaA
 gi|119861150|gb|AAX16945.1| chromosomal replication initiator protein DnaA [Borrelia hermsii
           DAH]
          Length = 484

 Score = 92.9 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 77/209 (36%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRSTR- 92
             + ++ +     + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 145 KYTFENFITGPNNKLAYNASLSIAKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHK 204

Query: 93  -FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130
            F  +  + ++ L +  + +                  LL+DI  L   +    +LFH  
Sbjct: 205 EFKILYVTAENFLNEFVESIKTNETKRFKKKYRYLDMLLLDDIHDLQKKEGIQEELFHTF 264

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  ++ T    P         L SR      V IS P+ +    +I K   +  
Sbjct: 265 NALYEDNKQMVFTCDRQPSELINFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + +++  ++   E  V K+
Sbjct: 325 IKVPKSILNLVAKKVTTNIRDLEAAVTKL 353


>gi|296112231|ref|YP_003626169.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis RH4]
 gi|295919925|gb|ADG60276.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis RH4]
 gi|326561743|gb|EGE12078.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis 7169]
 gi|326569036|gb|EGE19105.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis BC1]
          Length = 467

 Score = 92.9 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 82/245 (33%), Gaps = 32/245 (13%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87
            P   G + D  +   +   A    +      S+     + + G SG GK+ L +  + +
Sbjct: 125 LPIDPGFTFDVFIKGKSNASAYNACNELSRKESKHNYGPIFIYGSSGLGKTHLMHAMAHR 184

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDT----- 124
            +         + D                     I     ++++D+ ++  +       
Sbjct: 185 YQKYGKQFFYFTKDHFYKITLEAFRTNDIVQMEKEICQADLLIIDDVHMVSGSKAPKVTE 244

Query: 125 ---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              +LF    S       +++ +   P           SRL +   + I  PD +   ++
Sbjct: 245 ILMKLFDAF-SAGNTQKQVVLASDRPPSQMTSFGERYISRLSSCLQLSIEPPDMEMRIQI 303

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLK 240
           + K      + + ++ A Y+ Q +   +   E  + ++  +  + R   ++  L  + +K
Sbjct: 304 LEKKAQMLNLLLPRECALYMAQNLPPDVRGLEGALKRVQLSATILRNEPVSLPLVKDAIK 363

Query: 241 ETQQC 245
           +  Q 
Sbjct: 364 DQVQA 368


>gi|113953832|ref|YP_731136.1| chromosomal replication initiation protein [Synechococcus sp.
           CC9311]
 gi|123327711|sp|Q0I8T6|DNAA_SYNS3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|113881183|gb|ABI46141.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           CC9311]
          Length = 468

 Score = 92.9 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 81/251 (32%), Gaps = 29/251 (11%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76
            P     +L          +R   +V      A     +    P R    + + G  G G
Sbjct: 118 PPSTAPRRLP-GLNMRYVFNR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLG 174

Query: 77  KSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDI 116
           K+ L             ++R    S    + D I                    +L++DI
Sbjct: 175 KTHLMQAIGHYRLEIDPEARVFYVSTETFTNDLITAIRKDGMQAFRDRYRAADLILVDDI 234

Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             ++  +    + FH  N++H     +++ +   P         L SR     +  I  P
Sbjct: 235 QFIEGKEYTQEEFFHTFNALHDAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAP 294

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D +    ++ K     ++ + + L  YI  R   ++   E  + +    +   G+ +T  
Sbjct: 295 DLETRMAILQKKAEQERVALPRDLIQYISGRFTSNIRELEGALTRAVAFSSITGIPMTVE 354

Query: 234 LAAEVLKETQQ 244
             A +L  + Q
Sbjct: 355 SVAPMLDPSGQ 365


>gi|116075382|ref|ZP_01472642.1| chromosomal replication initiation protein [Synechococcus sp.
           RS9916]
 gi|116067579|gb|EAU73333.1| chromosomal replication initiation protein [Synechococcus sp.
           RS9916]
          Length = 469

 Score = 92.9 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 33/258 (12%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69
           P   +   P+           R    +R   +V      A     +    P R    + +
Sbjct: 116 PSPGQTRAPRRLP-----GLNRRYVFNR--FVVGPNSRMAHAAALAVAESPGREFNPLFI 168

Query: 70  VGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRK 109
            G  G GK+ L              +R +  S    + D I+                  
Sbjct: 169 CGGVGLGKTHLMQAIGHYRLEIDPDARVSYVSTETFTNDLIVAIRKDGMQAFRDRYRATD 228

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI  ++  +    + FH  N++H+    +++ +   P         L SR     
Sbjct: 229 LILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGL 288

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  I  PD +    ++ K     ++ + + L  Y+  R   ++   E  + +    A   
Sbjct: 289 IADIQAPDLETRMAILQKKAEQEKVSLPRDLIQYLSGRFTSNIRELEGALTRAVAFASIT 348

Query: 227 GMGITRSLAAEVLKETQQ 244
           G+ +T    A +L  + Q
Sbjct: 349 GLPMTVESVAPMLDPSGQ 366


>gi|33863457|ref|NP_895017.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. MIT 9313]
 gi|61212718|sp|Q7V6H4|DNAA_PROMM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|33640906|emb|CAE21362.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. MIT 9313]
          Length = 465

 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 82/251 (32%), Gaps = 28/251 (11%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76
            P +   ++          +R   +V      A     +    P R    + + G  G G
Sbjct: 114 APSSGPRRILPGLNLRYVFNR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLG 171

Query: 77  KSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDI 116
           K+ L             +++    S    + D I                    +L++DI
Sbjct: 172 KTHLMQAIGHYRLEINPEAKVAYVSTETFTNDLIQAIRKDGMQAFRDRYRATDLILVDDI 231

Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             ++  +    + FH  N++H+    +++ +   P         L SR     +  I  P
Sbjct: 232 QFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPKLQERLISRFSMGLIADIQSP 291

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D +    ++ K     ++ + + L  YI  R   ++   E  + +    A   G+ +T  
Sbjct: 292 DLETRMAILQKKAEQERMMLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITGLPMTVE 351

Query: 234 LAAEVLKETQQ 244
             A +L    Q
Sbjct: 352 SVAPMLDPNGQ 362


>gi|317153893|ref|YP_004121941.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944144|gb|ADU63195.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 451

 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 86/239 (35%), Gaps = 32/239 (13%)

Query: 34  RCLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCLANI------ 83
                S DD +V  + E A      L DS  ++ S  + L    G GK+ L +       
Sbjct: 116 HNWRFSFDDFVVGPSNELACAASKSLCDS--AFSSDHLFLSSGPGLGKTHLLHSVGNQLC 173

Query: 84  -----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND--- 123
                            ++ +      S       +   +    +LLED+      +   
Sbjct: 174 RAANRKNLKVACLSSEDFATRMVLAIKSRQVDVFKAQFRENLDVLLLEDVHFFQGKEKMQ 233

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +L   + ++ +    +L+T+   P  +      L SR  +  +  I+ PD +   ++++
Sbjct: 234 EELLCTLTALRERGCKVLLTSSFMPKEFSGVDNRLVSRFCSGFLAHINRPDLETRRRIVL 293

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +     Q+ +  +++  + +R+   +   E  +  +   A      +T +LA EVL   
Sbjct: 294 EKARKLQVSVPVEVSELLAERITTDIRQLESCLSNLVLKARLLNRAVTLNLAWEVLDNY 352


>gi|203287879|ref|YP_002222894.1| chromosomal replication initiator protein [Borrelia recurrentis A1]
 gi|226735784|sp|B5RRN9|DNAA_BORRA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|201085099|gb|ACH94673.1| chromosomal replication initiator protein [Borrelia recurrentis A1]
          Length = 484

 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 79/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRSTR- 92
             + ++ ++ +  + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 145 KYTFENFIIGTNNKLAYNASLSIAKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHK 204

Query: 93  -FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130
            F  +  + ++ L +  + +                  LL+DI  L   +    +LFH  
Sbjct: 205 EFKILYVTAENFLNEFVESIKTNETKRFKKKYRHLDMLLLDDIHDLQKKEGIQEELFHTF 264

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  ++ T    P         L SR      V IS P+ +    +I K   +  
Sbjct: 265 NALYEDNKQMVFTCDRQPSELVNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + +++  ++   E  V K+
Sbjct: 325 IKVPKNILNLVAKKVTTNIRDLEAAVTKL 353


>gi|203284345|ref|YP_002222085.1| chromosomal replication initiator protein [Borrelia duttonii Ly]
 gi|226735781|sp|B5RLZ3|DNAA_BORDL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|201083788|gb|ACH93379.1| chromosomal replication initiator protein [Borrelia duttonii Ly]
          Length = 484

 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 79/209 (37%), Gaps = 26/209 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRSTR- 92
             + ++ ++ +  + A     S    P +     ++ G  G GK+ L     +K+     
Sbjct: 145 KYTFENFIIGTNNKLAYNASLSIAKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHK 204

Query: 93  -FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130
            F  +  + ++ L +  + +                  LL+DI  L   +    +LFH  
Sbjct: 205 EFKILYVTAENFLNEFVESIKTNETKRFKKKYRHLDMLLLDDIHDLQKKEGIQEELFHTF 264

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++++ +  ++ T    P         L SR      V IS P+ +    +I K   +  
Sbjct: 265 NALYEDNKQMVFTCDRQPSELVNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I + K +   + +++  ++   E  V K+
Sbjct: 325 IKVPKNILNLVAKKVTTNIRDLEAAVTKL 353


>gi|197106892|ref|YP_002132269.1| chromosomal replication initiator protein DnaA [Phenylobacterium
           zucineum HLK1]
 gi|196480312|gb|ACG79840.1| chromosomal replication initiator protein DnaA [Phenylobacterium
           zucineum HLK1]
          Length = 484

 Score = 92.5 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 32/217 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI--W----- 84
               S D  +   A E A  +     +W       V+  GP G GK+ L N   W     
Sbjct: 144 QERFSFDTFVSGPANEFAFAVARRVATWADGHFNPVLFHGPYGFGKTHLLNALAWEAMRT 203

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDT---RKPVLLEDIDLLDF---NDTQLFH 128
                     +++  +T    +         D       +L++D+  +        +LFH
Sbjct: 204 APDKRVVYLTAERFTTTFVKALQDRQTQAFKDDLRNADLLLIDDVHFVAGKTQTQEELFH 263

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK---- 184
            + ++ +    +++TA   P       P L S L+A  V  I   D      ++ +    
Sbjct: 264 TLIALVEDGRRVVLTADRSPTELSEMEPRLRSHLQAGLVCGIEPADRSLRLGILERKLLT 323

Query: 185 MFADRQIFID--KKLAAYIVQRMERSLVFAEKLVDKM 219
           +    +       ++  ++  R   S+   E  ++ +
Sbjct: 324 LATQGRFHPSARPEVLQFLADRFTDSVRELEGALNTL 360


>gi|322377905|ref|ZP_08052393.1| replication initiation protein DnaA [Streptococcus sp. M334]
 gi|321281081|gb|EFX58093.1| replication initiation protein DnaA [Streptococcus sp. M334]
          Length = 453

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|307705907|ref|ZP_07642745.1| chromosomal replication initiator protein DnaA [Streptococcus mitis
           SK597]
 gi|307620568|gb|EFN99666.1| chromosomal replication initiator protein DnaA [Streptococcus mitis
           SK597]
          Length = 453

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|301793326|emb|CBW35685.1| chromosomal replication initiator protein [Streptococcus pneumoniae
           INV104]
          Length = 453

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|298501757|ref|YP_003723697.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae TCH8431/19A]
 gi|298237352|gb|ADI68483.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 432

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 91  DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 150

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 151 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 210

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 211 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 270

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 271 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 330

Query: 243 QQ 244
           +Q
Sbjct: 331 KQ 332


>gi|225860013|ref|YP_002741522.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|254777920|sp|C1CU44|DNAA_STRZT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|225727811|gb|ACO23662.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|327388986|gb|EGE87334.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae GA04375]
          Length = 453

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|225855736|ref|YP_002737247.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae P1031]
 gi|254777919|sp|C1CN66|DNAA_STRZP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|225725753|gb|ACO21605.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae P1031]
          Length = 453

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|2109445|gb|AAC45336.1| initiator protein [Streptococcus pneumoniae]
          Length = 453

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|15902045|ref|NP_357595.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae R6]
 gi|116516053|ref|YP_815417.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae D39]
 gi|148984545|ref|ZP_01817833.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|148988886|ref|ZP_01820301.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|148997957|ref|ZP_01825470.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae SP11-BS70]
 gi|149013383|ref|ZP_01834092.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae SP19-BS75]
 gi|149020159|ref|ZP_01835133.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168484307|ref|ZP_02709259.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae CDC1873-00]
 gi|168491771|ref|ZP_02715914.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae CDC0288-04]
 gi|168493999|ref|ZP_02718142.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae CDC3059-06]
 gi|169832473|ref|YP_001693435.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae Hungary19A-6]
 gi|182682971|ref|YP_001834718.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae CGSP14]
 gi|221230949|ref|YP_002510101.1| chromosomal replication initiator protein [Streptococcus pneumoniae
           ATCC 700669]
 gi|225853612|ref|YP_002735124.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae JJA]
 gi|237651054|ref|ZP_04525306.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821167|ref|ZP_04597012.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298229492|ref|ZP_06963173.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255938|ref|ZP_06979524.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|303254902|ref|ZP_07340987.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae BS455]
 gi|303259727|ref|ZP_07345703.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP-BS293]
 gi|303262194|ref|ZP_07348139.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265390|ref|ZP_07351297.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae BS397]
 gi|303266062|ref|ZP_07351956.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae BS457]
 gi|303268470|ref|ZP_07354264.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae BS458]
 gi|307066637|ref|YP_003875603.1| DNA replication initiation ATPase [Streptococcus pneumoniae AP200]
 gi|38257595|sp|Q8DRQ4|DNAA_STRR6 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|122279578|sp|Q04N63|DNAA_STRP2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735854|sp|B1I6X3|DNAA_STRPI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735855|sp|B2IQY9|DNAA_STRPS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777916|sp|B8ZJH9|DNAA_STRPJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777918|sp|C1CH81|DNAA_STRZJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|15457529|gb|AAK98805.1| DNA biosynthesis, initiation, binding protein [Streptococcus
           pneumoniae R6]
 gi|116076629|gb|ABJ54349.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae D39]
 gi|147755967|gb|EDK63010.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae SP11-BS70]
 gi|147762906|gb|EDK69854.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae SP19-BS75]
 gi|147923322|gb|EDK74436.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|147925697|gb|EDK76773.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147930837|gb|EDK81818.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168994975|gb|ACA35587.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042405|gb|EDT50451.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae CDC1873-00]
 gi|182628305|gb|ACB89253.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae CGSP14]
 gi|183573942|gb|EDT94470.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae CDC0288-04]
 gi|183576010|gb|EDT96538.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae CDC3059-06]
 gi|220673409|emb|CAR67867.1| chromosomal replication initiator protein [Streptococcus pneumoniae
           ATCC 700669]
 gi|225723669|gb|ACO19522.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae JJA]
 gi|301799150|emb|CBW31662.1| chromosomal replication initiator protein [Streptococcus pneumoniae
           OXC141]
 gi|301800974|emb|CBW33635.1| chromosomal replication initiator protein [Streptococcus pneumoniae
           INV200]
 gi|302598173|gb|EFL65234.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae BS455]
 gi|302636834|gb|EFL67324.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639279|gb|EFL69738.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP-BS293]
 gi|302641971|gb|EFL72324.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae BS458]
 gi|302644366|gb|EFL74619.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae BS457]
 gi|302645067|gb|EFL75307.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae BS397]
 gi|306408174|gb|ADM83601.1| ATPase involved in DNA replication initiation [Streptococcus
           pneumoniae AP200]
 gi|332077808|gb|EGI88267.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae GA41301]
 gi|332198865|gb|EGJ12947.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae GA47368]
          Length = 453

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|15899950|ref|NP_344554.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae TIGR4]
 gi|148993607|ref|ZP_01823078.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|149007716|ref|ZP_01831325.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|168487221|ref|ZP_02711729.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae CDC1087-00]
 gi|168489313|ref|ZP_02713512.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae SP195]
 gi|168576111|ref|ZP_02722016.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae MLV-016]
 gi|194398133|ref|YP_002036722.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae G54]
 gi|225857810|ref|YP_002739320.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae 70585]
 gi|307126152|ref|YP_003878183.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae 670-6B]
 gi|18266737|sp|O08397|DNAA_STRPN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735853|sp|B5E568|DNAA_STRP4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|254777915|sp|C1C982|DNAA_STRP7 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|14971465|gb|AAK74194.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae TIGR4]
 gi|147760711|gb|EDK67683.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|147927828|gb|EDK78850.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|183569905|gb|EDT90433.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae CDC1087-00]
 gi|183572228|gb|EDT92756.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae SP195]
 gi|183578101|gb|EDT98629.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae MLV-016]
 gi|194357800|gb|ACF56248.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae G54]
 gi|225721516|gb|ACO17370.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae 70585]
 gi|306483214|gb|ADM90083.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae 670-6B]
 gi|332071323|gb|EGI81818.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae GA17545]
 gi|332071685|gb|EGI82178.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae GA17570]
 gi|332199068|gb|EGJ13149.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae GA47901]
          Length = 453

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|111658629|ref|ZP_01409279.1| hypothetical protein SpneT_02000219 [Streptococcus pneumoniae
           TIGR4]
          Length = 432

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 91  DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 150

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 151 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 210

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 211 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 270

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 271 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 330

Query: 243 QQ 244
           +Q
Sbjct: 331 KQ 332


>gi|229551104|ref|ZP_04439829.1| DNA-directed DNA replication initiator protein [Lactobacillus
           rhamnosus LMS2-1]
 gi|229315565|gb|EEN81538.1| DNA-directed DNA replication initiator protein [Lactobacillus
           rhamnosus LMS2-1]
          Length = 468

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 28/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++    + A     +    P      + + G  G GK+ L     +     
Sbjct: 131 NPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLEN 190

Query: 92  RFSNIAKSLDSILIDTR--------------------KPVLLEDI----DLLDFNDTQLF 127
             +   K + S                            +L++DI    D     +   F
Sbjct: 191 NPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEE-FF 249

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++++    +++T+   P         L SR      V ++ PD +    ++     
Sbjct: 250 HTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKAN 309

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              + I     +YI  ++E ++   E  + ++   +  +   IT SLAA+ LK  +  D
Sbjct: 310 AEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDD 368


>gi|257124815|ref|YP_003162929.1| chromosomal replication initiator protein DnaA [Leptotrichia
           buccalis C-1013-b]
 gi|257048754|gb|ACV37938.1| chromosomal replication initiator protein DnaA [Leptotrichia
           buccalis C-1013-b]
          Length = 451

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 31/236 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87
                 D+ +V    + A     +  + P+ V   + + G SG GK+ L     ++    
Sbjct: 109 NPKHRFDNFIVGENSKLAYNACLAVVNNPTPVYNPLFIYGSSGLGKTHLMQAVGNEILEN 168

Query: 88  --SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDID--------LLDFND 123
             ++   +S   +  +                       +LL+DI              +
Sbjct: 169 NPNKRVYYSTSEEFANEFFKVLNGGRIQHFRDTFRALDVLLLDDIQFFEKVFGRGEGTVE 228

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N + +    ++M +   P         L SR  +   V+I  P  +    ++ 
Sbjct: 229 EEFFHTFNKLQELGKQIIMISDKSPKEIKNLSKRLESRFLSGLTVEIQSPGFETRMMILK 288

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            M   + I ID  +  YI   +  ++   E  +  ++  A      IT  L  E+L
Sbjct: 289 NMAKTQDIEIDDSILEYISDSLNTNVRELEGTLTNLNARAKLLNEKITLQLVQEML 344


>gi|199598234|ref|ZP_03211655.1| DNA replication ATPase initiation [Lactobacillus rhamnosus HN001]
 gi|258506996|ref|YP_003169747.1| chromosomal replication initiation protein [Lactobacillus rhamnosus
           GG]
 gi|258538192|ref|YP_003172691.1| chromosomal replication initiation protein [Lactobacillus rhamnosus
           Lc 705]
 gi|199590837|gb|EDY98922.1| DNA replication ATPase initiation [Lactobacillus rhamnosus HN001]
 gi|257146923|emb|CAR85896.1| Chromosomal replication initiator protein dnaA [Lactobacillus
           rhamnosus GG]
 gi|257149868|emb|CAR88840.1| Chromosomal replication initiator protein dnaA [Lactobacillus
           rhamnosus Lc 705]
 gi|259648366|dbj|BAI40528.1| chromosomal replication initiator protein DnaA [Lactobacillus
           rhamnosus GG]
          Length = 449

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 28/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++    + A     +    P      + + G  G GK+ L     +     
Sbjct: 112 NPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLEN 171

Query: 92  RFSNIAKSLDSILIDTR--------------------KPVLLEDI----DLLDFNDTQLF 127
             +   K + S                            +L++DI    D     +   F
Sbjct: 172 NPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEE-FF 230

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++++    +++T+   P         L SR      V ++ PD +    ++     
Sbjct: 231 HTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKAN 290

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              + I     +YI  ++E ++   E  + ++   +  +   IT SLAA+ LK  +  D
Sbjct: 291 AEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDD 349


>gi|194097590|ref|YP_002000626.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|193932880|gb|ACF28704.1| putative chromosomal replication protein (DnaA) [Neisseria
           gonorrhoeae NCCP11945]
 gi|317165576|gb|ADV09117.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 502

 Score = 92.5 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 146 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 205

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 206 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 265

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 266 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 325

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 326 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 385

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 386 RPVIDIDLARTALQD 400


>gi|313893529|ref|ZP_07827099.1| chromosomal replication initiator protein DnaA [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441972|gb|EFR60394.1| chromosomal replication initiator protein DnaA [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 525

 Score = 92.1 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 91/280 (32%), Gaps = 43/280 (15%)

Query: 7   DYSFFVPDKQ-KNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSW 59
           D     P K  +   P  + + +               D+ +  +A      A + +  +
Sbjct: 150 DEPMVAPSKTVETTTPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEF 209

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----- 114
           P      + + GPSG GK+ L +       + +  +    + SI  +    + +E     
Sbjct: 210 PGGDYNPLFIYGPSGLGKTHLMHAI---GNAIKEHHPHMKVMSITSENFMNIFVETLQRN 266

Query: 115 ----------DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                     +ID+L  +D           T+LF+  N +   +  +++T+ T P     
Sbjct: 267 QGKLFRNTFRNIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQ 326

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERS 208
               L SR +A  +  +  PD +    +   +        R I ID     Y+  +   +
Sbjct: 327 FEDRLRSRFQAGYIATMENPDLETRIAIFRSLLEREYKKNRVIRIDNDSINYVALQFSEN 386

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSL--AAEVLKETQQCD 246
           +   +    K+   A       +  L    + L      +
Sbjct: 387 VRVLQGAFTKLIGTASIDQRLESIDLEYTKQALAGLVHTE 426


>gi|190572092|ref|YP_001969937.1| chromosomal replication initiation protein [Stenotrophomonas
           maltophilia K279a]
 gi|254522083|ref|ZP_05134138.1| chromosomal replication initiator protein DnaA [Stenotrophomonas
           sp. SKA14]
 gi|226735852|sp|B2FUW1|DNAA_STRMK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|190010014|emb|CAN85568.1| putative chromosomal replication initiator protein DnaA
           [Stenotrophomonas maltophilia K279a]
 gi|219719674|gb|EED38199.1| chromosomal replication initiator protein DnaA [Stenotrophomonas
           sp. SKA14]
          Length = 443

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 27/250 (10%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKS 78
           + E Q+ F+       +  + +   +       A +            ++L G +G GK+
Sbjct: 96  SSEPQVPFAGNLDNHYTFANFVEGRSNQLGLAAAFQAAQKPGDRAHNPLLLYGGTGLGKT 155

Query: 79  CLANIWSDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDL 118
            L     +  R                FS + ++L    +D           +L++DI  
Sbjct: 156 HLMFAAGNAMRQANPGAKVLYLRSEQFFSAMIRALQEKTMDQFKRQFQQVDALLIDDIQF 215

Query: 119 LDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
               D    + FH  N++      +++T   +P         L SRL     V I  PD 
Sbjct: 216 FAGKDRTQEEFFHTFNALFDGKQQIILTCDRYPREVEGLEARLKSRLAWGLSVAIEPPDF 275

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           +    +++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A
Sbjct: 276 ETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLTARANFTGRAITTEFA 335

Query: 236 AEVLKETQQC 245
            E L++  + 
Sbjct: 336 QETLRDLLRA 345


>gi|29840131|ref|NP_829237.1| chromosomal replication initiation protein [Chlamydophila caviae
           GPIC]
 gi|33301062|sp|Q823P0|DNAA1_CHLCV RecName: Full=Chromosomal replication initiator protein DnaA 1
 gi|29834479|gb|AAP05115.1| chromosomal replication initiator protein DnaA [Chlamydophila
           caviae GPIC]
          Length = 450

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 92/262 (35%), Gaps = 35/262 (13%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVV 67
             P + +    +  EE   F          D+ +   + +    A   I   P      +
Sbjct: 93  IAPREPQESPAETFEESKDFELKLNAAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSYNPL 152

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILID-------T 107
            + G  G GK+ L +      R                 +++ + L    ID       +
Sbjct: 153 FIHGGVGLGKTHLLHAVGHYVREHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRS 212

Query: 108 RKPVLLEDI----DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
              +L++DI    +  +F +        +IN     +  +++T+   P    +    + +
Sbjct: 213 LDLLLVDDIQFLQNRQNFEEEFCNTFETLINL----NKQIVITSDKPPGQLKLS-ERIIA 267

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R++   V  + +PD +    ++      + + I  ++A YI   +  ++   E  ++K+ 
Sbjct: 268 RMEWGLVAHVGIPDLETRVAILQHKAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLT 327

Query: 221 NLALSRGMGITRSLAAEVLKET 242
                 G  +T S+  + L+E 
Sbjct: 328 AYCRLFGKTLTESIVRDTLREL 349


>gi|87302489|ref|ZP_01085306.1| chromosomal replication initiation protein [Synechococcus sp. WH
           5701]
 gi|87282833|gb|EAQ74790.1| chromosomal replication initiation protein [Synechococcus sp. WH
           5701]
          Length = 484

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 26/232 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
                 +  +V      A     +    P R    + L G  G GK+ L           
Sbjct: 146 NPRYVFNRFVVGPNSRMAHAAALAVAEAPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEI 205

Query: 87  --KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQLFH 128
             ++R    S    + D I                    +L++DI  ++  +    + FH
Sbjct: 206 DPEARVFYVSTETFTNDLIQAIRKDGMQKFRDRYRAADLILVDDIQFIEGKEYTQEEFFH 265

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H+    +++ +   P         L SR     +  I  PD +    ++ K    
Sbjct: 266 TFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAILHKKAEQ 325

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            ++ + + L  Y+  R   ++   E  + +    A   G+ +T    A +L 
Sbjct: 326 ERMALPRDLIQYLAGRFTSNIRELEGALTRAVAFASITGLPMTVESVAPMLD 377


>gi|160901492|ref|YP_001567073.1| chromosomal replication initiator protein DnaA [Petrotoga mobilis
           SJ95]
 gi|160359136|gb|ABX30750.1| chromosomal replication initiator protein DnaA [Petrotoga mobilis
           SJ95]
          Length = 454

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 80/251 (31%), Gaps = 33/251 (13%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGK 77
           KN+  +L          + D  +  ++   A      +  +        + + G  G GK
Sbjct: 92  KNRPLKLS---EFNPEFTFDSFVTGNSNRIAYYSALEVCKNPGK--YNPLFIYGDVGLGK 146

Query: 78  SCLANI---------------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           + L +                      + ++      ++  ++           +L++D+
Sbjct: 147 THLLHAIGNFLMENAPDLKVKYVTAEDFMNQMMDGIRASDMENFRERFRRNVDFLLIDDV 206

Query: 117 DLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             L       ++LFH  NS+      +++ +   P       P L SR +   +  I  P
Sbjct: 207 QFLIGKNTVQSELFHTFNSLFNSRKQIVICSDRTPDELATFHPRLISRFEMGLITDIQAP 266

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D      +  KM     + +   +A Y+ + ++ +L      +  +   +   G      
Sbjct: 267 DKATKYLIAKKMAQMISLQLTDDVAYYLAEHVDTNLRKLRGAIMNLLLQSQISGAPANIE 326

Query: 234 LAAEVLKETQQ 244
            A  ++    +
Sbjct: 327 SAKTIVNSMMR 337


>gi|240079896|ref|ZP_04724439.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           FA19]
          Length = 478

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 122 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 181

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 182 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 241

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 242 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 301

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 302 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 361

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 362 RPVIDIDLARTALQD 376


>gi|191636825|ref|YP_001985991.1| chromosomal replication initiation protein [Lactobacillus casei
           BL23]
 gi|226735820|sp|B3W6N4|DNAA_LACCB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|190711127|emb|CAQ65133.1| Chromosomal replication initiator protein dnaA [Lactobacillus casei
           BL23]
 gi|327380862|gb|AEA52338.1| DNA-directed DNA replication initiator protein [Lactobacillus casei
           LC2W]
 gi|327384028|gb|AEA55502.1| DNA-directed DNA replication initiator protein [Lactobacillus casei
           BD-II]
          Length = 449

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 84/239 (35%), Gaps = 28/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKS--- 88
               + D  ++    + A     +    P      + + G  G GK+ L     +     
Sbjct: 112 NPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLDN 171

Query: 89  --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDI----DLLDFNDTQLF 127
              +      +++  +  I++                  +L++DI    D     +   F
Sbjct: 172 NPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEE-FF 230

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++++    +++T+   P         L SR      V ++ PD +    ++     
Sbjct: 231 HTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKAD 290

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              + I     +YI  ++E ++   E  + ++   +  +   IT SLAA+ LK  +  D
Sbjct: 291 AEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDD 349


>gi|294792397|ref|ZP_06757544.1| ATPase involved in DNA replication initiation [Veillonella sp.
           6_1_27]
 gi|294456296|gb|EFG24659.1| ATPase involved in DNA replication initiation [Veillonella sp.
           6_1_27]
          Length = 474

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 83/241 (34%), Gaps = 34/241 (14%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRV 66
           P K     P  + + +               D+ +  +A      A + +  +P      
Sbjct: 106 PKKSTETMPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDYNP 165

Query: 67  VILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSIL------------------ID 106
           + + GPSG GK+ L +    + K        ++ + ++ +                    
Sbjct: 166 LFIYGPSGLGKTHLMHAIGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFR 225

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               ++++DI  L+  +   T+LF+  N +   +  +++T+ T P         L SR +
Sbjct: 226 NIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQ 285

Query: 164 AATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
           A  +  +  PD +    +   +        R I ID     Y+  +   ++   +    K
Sbjct: 286 AGYIATMENPDLETRIAIFRSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTK 345

Query: 219 M 219
           +
Sbjct: 346 L 346


>gi|254430118|ref|ZP_05043821.1| chromosomal replication initiator protein DnaA [Cyanobium sp. PCC
           7001]
 gi|197624571|gb|EDY37130.1| chromosomal replication initiator protein DnaA [Cyanobium sp. PCC
           7001]
          Length = 492

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 80/242 (33%), Gaps = 26/242 (10%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS 85
            F+         +  +V      A     +    P R    + + G  G GK+ L     
Sbjct: 148 AFAPGLNPRYVFNRFVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLGKTHLMQAIG 207

Query: 86  D-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND-- 123
                   ++R    S    + D I                    +L++DI  ++  +  
Sbjct: 208 HYRLEINPEARVFYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDIQFIEGKEYT 267

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N++H+    +++ +   P         L SR     +  I  PD +    ++
Sbjct: 268 QEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAIL 327

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            K     Q+ + ++L  +I  R   ++   E  + +    A   G+ +T    A +L   
Sbjct: 328 HKKAEQEQMALPRELIQFIAGRFTSNIRELEGALTRAVAFASITGLPMTVESVAPMLDPA 387

Query: 243 QQ 244
            +
Sbjct: 388 GR 389


>gi|325139557|gb|EGC62097.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis CU385]
          Length = 522

 Score = 92.1 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 166 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 225

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 226 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 285

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 286 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 345

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 346 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMN 405

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 406 RPVIDIDLARTALQD 420


>gi|322388480|ref|ZP_08062083.1| DNA-directed DNA replication initiator protein [Streptococcus
           infantis ATCC 700779]
 gi|321140793|gb|EFX36295.1| DNA-directed DNA replication initiator protein [Streptococcus
           infantis ATCC 700779]
          Length = 453

 Score = 92.1 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 34/242 (14%)

Query: 35  CLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + D+ +        + A   +   P      + + G  G GK+ L N   ++    
Sbjct: 116 RDIYTFDNFIQGDGNIWAKSAALAVSEDPGLTYNPLFIYGGPGLGKTHLLNALGNEILKK 175

Query: 88  -SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFN----DTQLF 127
              +      A+S  +  +D               +   +L++DI  L  N      + F
Sbjct: 176 NPNARVKYIPAESFINEFLDHLRLNDMDNFKKTYRSLDLLLIDDIQSLSGNKVQTQDEFF 235

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N +H  +  +++T+   P         L +R        I+ PD +    ++     
Sbjct: 236 NTFNKLHSNNKQIVLTSDRRPEQLENLPERLVTRFSWGLTTDITPPDFETRIAILNSKTE 295

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG----ITRSLAAEVLKETQ 243
           D           Y+  + + ++   E  +  +   +L   +     IT  +A+E ++  +
Sbjct: 296 DLDYHFQPDTIEYLAGQFDSNVRELEGALKDI---SLMAKVKQINTITVDIASEAIRARK 352

Query: 244 QC 245
           Q 
Sbjct: 353 QS 354


>gi|240112104|ref|ZP_04726594.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           MS11]
 gi|240122690|ref|ZP_04735646.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           PID332]
          Length = 479

 Score = 92.1 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 123 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 182

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 183 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 242

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 243 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 302

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 303 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 362

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 363 RPVIDIDLARTALQD 377


>gi|268596039|ref|ZP_06130206.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae FA19]
 gi|268549827|gb|EEZ44846.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae FA19]
          Length = 518

 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 221

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 402 RPVIDIDLARTALQD 416


>gi|239998133|ref|ZP_04718057.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           35/02]
 gi|240013314|ref|ZP_04720227.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           DGI18]
 gi|240015759|ref|ZP_04722299.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           FA6140]
 gi|240114850|ref|ZP_04728912.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           PID18]
 gi|240117052|ref|ZP_04731114.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           PID1]
 gi|240124878|ref|ZP_04737764.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|240127391|ref|ZP_04740052.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 478

 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 122 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 181

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 182 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 241

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 242 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 301

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 302 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 361

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 362 RPVIDIDLARTALQD 376


>gi|194363779|ref|YP_002026389.1| chromosomal replication initiation protein [Stenotrophomonas
           maltophilia R551-3]
 gi|226735851|sp|B4SU11|DNAA_STRM5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|194346583|gb|ACF49706.1| chromosomal replication initiator protein DnaA [Stenotrophomonas
           maltophilia R551-3]
          Length = 443

 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 27/250 (10%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKS 78
           + E Q+ F+       +  + +   +       A +            ++L G +G GK+
Sbjct: 96  SSEPQVPFAGNLDNHYTFANFVEGRSNQLGLAAAFQAAQKPGDRAHNPLLLYGGTGLGKT 155

Query: 79  CLANIWSDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDL 118
            L     +  R                FS + ++L    +D           +L++DI  
Sbjct: 156 HLMFAAGNAMRQANPGAKVLYLRSEQFFSAMIRALQEKTMDQFKRQFQQVDALLIDDIQF 215

Query: 119 LDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
               D    + FH  N++      +++T   +P         L SRL     V I  PD 
Sbjct: 216 FAGKDRTQEEFFHTFNALFDGKQQIILTCDRYPREVEGLEARLKSRLAWGLSVAIEPPDF 275

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           +    +++    +R   I   +A  I ++M  ++   E  ++ +   A   G  IT   A
Sbjct: 276 ETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLTARANFTGRAITTEFA 335

Query: 236 AEVLKETQQC 245
            E L++  + 
Sbjct: 336 QETLRDLLRA 345


>gi|295321475|pdb|2KJQ|A Chain A, Solution Structure Of Protein Nmb1076 From Neisseria
           Meningi Northeast Structural Genomics Consortium Target
           Mr101b
          Length = 149

 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
            + + + G  G+GKS L   W  ++      +      +  L     +  + + ++ ++ 
Sbjct: 36  GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEK 94

Query: 119 LDFNDTQL-FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           L   +  L F I N         L+    +     V   DL +R+    V ++  
Sbjct: 95  LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKP 149


>gi|171913561|ref|ZP_02929031.1| chromosomal replication initiation protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 526

 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 84/242 (34%), Gaps = 32/242 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84
               S +  +V      +  +  +    P R    + L G  G GK+ L           
Sbjct: 189 NTRFSFNAFVVGPNCTYSCAVAKAVAEKPGRTYNPLFLHGAVGLGKTHLMQAIGREILHN 248

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDF---NDTQLFH 128
                     S+   +     +  S  S      +    +L++DI           + FH
Sbjct: 249 KPKKVVRYVTSEAFTNEYIEALRHSKVSAFRQKYRKVDVLLIDDIQFFAGKGSTQEEFFH 308

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N +      +++T+   P         L SR +     +I  PD +    ++ +   D
Sbjct: 309 TFNDLFNSFKQIVLTSDRAPSEIKNLEARLVSRFEWGMATQIESPDLETRTAILRQKMVD 368

Query: 189 RQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE-TQQ 244
             + +D  + +++ + +    R L  A   V    +++L  G  +T+++   +L++  ++
Sbjct: 369 WCVQVDDWVLSFLAENIRTNVRRLEGALMRVAA--HISLGNGGPLTQTIVETLLRDILEE 426

Query: 245 CD 246
            D
Sbjct: 427 PD 428


>gi|282851872|ref|ZP_06261234.1| chromosomal replication initiator protein DnaA [Lactobacillus
           gasseri 224-1]
 gi|282556979|gb|EFB62579.1| chromosomal replication initiator protein DnaA [Lactobacillus
           gasseri 224-1]
          Length = 332

 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 78/239 (32%), Gaps = 38/239 (15%)

Query: 13  PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           P++    +P+ K  Q                    + D  +     + A     +    P
Sbjct: 88  PERLVTPKPRIKTNQEILEDRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 147

Query: 64  SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109
                 + + G  G GK+ L         ++K  +      +++  +  I++ K      
Sbjct: 148 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAE 207

Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     +L++DI      +    + FH   +++     ++MT+   P         
Sbjct: 208 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 267

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAE 213
           L SR      V+I+ PD +    ++ K      + ID     YI  +++   R L  A 
Sbjct: 268 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGAL 326


>gi|254526330|ref|ZP_05138382.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537754|gb|EEE40207.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. MIT 9202]
          Length = 464

 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 23/197 (11%)

Query: 67  VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109
           + + G  G GK+ L                     ++   +   S I +   + + D  +
Sbjct: 161 LFICGGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYR 220

Query: 110 ---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI  L+  +    + FH  N++H+  S +++ +   P         L SR  
Sbjct: 221 NVDLILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFS 280

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                 I  PD +    ++ K     ++ + + L  +I  R   ++   E    +    A
Sbjct: 281 MGMTADIQPPDLETRTAILQKKAEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAFA 340

Query: 224 LSRGMGITRSLAAEVLK 240
              G+ +T    A +L 
Sbjct: 341 SITGLPMTVQSIAPMLD 357


>gi|157412981|ref|YP_001483847.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. MIT 9215]
 gi|167016903|sp|A8G3T0|DNAA_PROM2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157387556|gb|ABV50261.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. MIT 9215]
          Length = 464

 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 23/197 (11%)

Query: 67  VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109
           + + G  G GK+ L                     ++   +   S I +   + + D  +
Sbjct: 161 LFICGGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYR 220

Query: 110 ---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI  L+  +    + FH  N++H+  S +++ +   P         L SR  
Sbjct: 221 KVDLILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFS 280

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                 I  PD +    ++ K     ++ + + L  +I  R   ++   E    +    A
Sbjct: 281 MGMTADIQPPDLETRTAILQKKAEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAFA 340

Query: 224 LSRGMGITRSLAAEVLK 240
              G+ +T    A +L 
Sbjct: 341 SITGLPMTVQSIAPMLD 357


>gi|123968156|ref|YP_001009014.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. AS9601]
 gi|166214692|sp|A2BQ46|DNAA_PROMS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123198266|gb|ABM69907.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. AS9601]
          Length = 464

 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 23/197 (11%)

Query: 67  VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109
           + + G  G GK+ L                     ++   +   S I +   + + D  +
Sbjct: 161 LFICGGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYR 220

Query: 110 ---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI  L+  +    + FH  N++H+  S +++ +   P         L SR  
Sbjct: 221 NVDLILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFS 280

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                 I  PD +    ++ K     ++ + + L  +I  R   ++   E    +    A
Sbjct: 281 MGMTADIQPPDLETRTAILQKKAEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAFA 340

Query: 224 LSRGMGITRSLAAEVLK 240
              G+ +T    A +L 
Sbjct: 341 SITGLPMTVQSIAPMLD 357


>gi|319949431|ref|ZP_08023492.1| chromosomal replication initiation protein [Dietzia cinnamea P4]
 gi|319436893|gb|EFV91952.1| chromosomal replication initiation protein [Dietzia cinnamea P4]
          Length = 501

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 23/207 (11%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSILIDTRKP------ 110
               + + G SG GK+ L +            +  ++ +  +  +  +   R        
Sbjct: 192 AYNPLFIWGESGLGKTHLLHAIGHYSLRMYSEQKVKYVSTEEFTNDFINSVRDGRQNMFK 251

Query: 111 --------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
                   +L++DI  L   +    + FH  N+IH     +++++   P         L 
Sbjct: 252 KRYREADILLVDDIQFLIGKEQVQEEFFHTFNTIHNAQKQIVISSDRPPKQLQPLEDRLR 311

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +R +   +  I  P+ +    ++ K        + + +   I  R++R++   E  + ++
Sbjct: 312 TRFEWGLITDIQPPELETRIAILDKKAKSENYVVPRDVLELIATRVQRNIRELEGALIRV 371

Query: 220 DNLALSRGMGITRSLAAEVLKETQQCD 246
              A   G  I   LA  VL++    D
Sbjct: 372 VAFASLNGHEIDVPLAEIVLRDVVSDD 398


>gi|59800474|ref|YP_207186.1| putative chromosomal replication protein (DnaA) [Neisseria
           gonorrhoeae FA 1090]
 gi|254492913|ref|ZP_05106084.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae 1291]
 gi|260441335|ref|ZP_05795151.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           DGI2]
 gi|268593985|ref|ZP_06128152.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae 35/02]
 gi|268598163|ref|ZP_06132330.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae MS11]
 gi|268600507|ref|ZP_06134674.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae PID18]
 gi|268602740|ref|ZP_06136907.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae PID1]
 gi|268681289|ref|ZP_06148151.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae PID332]
 gi|268683460|ref|ZP_06150322.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae SK-92-679]
 gi|268685766|ref|ZP_06152628.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291044693|ref|ZP_06570402.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae DGI2]
 gi|293397795|ref|ZP_06642001.1| chromosomal replication initiator protein DnaA [Neisseria
           gonorrhoeae F62]
 gi|71151801|sp|Q5FAJ2|DNAA_NEIG1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|59717369|gb|AAW88774.1| putative chromosomal replication protein (DnaA) [Neisseria
           gonorrhoeae FA 1090]
 gi|226511953|gb|EEH61298.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae 1291]
 gi|268547374|gb|EEZ42792.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae 35/02]
 gi|268582294|gb|EEZ46970.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae MS11]
 gi|268584638|gb|EEZ49314.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae PID18]
 gi|268586871|gb|EEZ51547.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae PID1]
 gi|268621573|gb|EEZ53973.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae PID332]
 gi|268623744|gb|EEZ56144.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae SK-92-679]
 gi|268626050|gb|EEZ58450.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291011587|gb|EFE03583.1| chromosomal replication initiator protein dnaA [Neisseria
           gonorrhoeae DGI2]
 gi|291611741|gb|EFF40810.1| chromosomal replication initiator protein DnaA [Neisseria
           gonorrhoeae F62]
          Length = 518

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 221

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 402 RPVIDIDLARTALQD 416


>gi|304388449|ref|ZP_07370555.1| DNA-directed DNA replication initiator protein [Neisseria
           meningitidis ATCC 13091]
 gi|304337566|gb|EFM03729.1| DNA-directed DNA replication initiator protein [Neisseria
           meningitidis ATCC 13091]
          Length = 518

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 402 RPVIDIDLARTALQD 416


>gi|167755165|ref|ZP_02427292.1| hypothetical protein CLORAM_00670 [Clostridium ramosum DSM 1402]
 gi|167705215|gb|EDS19794.1| hypothetical protein CLORAM_00670 [Clostridium ramosum DSM 1402]
          Length = 448

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 29/211 (13%)

Query: 38  ISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--- 91
           ++ D+ +V S+   A     L+ + P      + +    G GK+ L N   + ++     
Sbjct: 110 LTFDNFVVGSSNRMAQNAALLVSTNPGSNFNPLFIYSNPGLGKTHLLNAIGNYAKEVNPA 169

Query: 92  --------------RFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDTQ---LFHIIN 131
                             +       + D  K    +L++DI  L   +      FHI N
Sbjct: 170 LRIRYITSKDFVDEVIGAMKGRDGDEIYDKYKNLDILLIDDIQFLFNKEKSSEIFFHIFN 229

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM---FAD 188
            +   +  +++T+   P         L SR  +     I  P+ +    ++ K      +
Sbjct: 230 ELINNNKQIVITSDKMPEELQGIESRLISRFNSGLSFGIDPPEFETARAILEKKIENLDN 289

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             + I   +  ++     + +   E  + ++
Sbjct: 290 PSLIIQDDVVDFMANHYCKDIRSLEGALKRL 320


>gi|124022539|ref|YP_001016846.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. MIT 9303]
 gi|166214690|sp|A2C7X1|DNAA_PROM3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123962825|gb|ABM77581.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. MIT 9303]
          Length = 463

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 82/250 (32%), Gaps = 28/250 (11%)

Query: 21  PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77
           P +   ++          +R   +V      A     +    P R    + + G  G GK
Sbjct: 113 PSSGPRRILPGLNLRYVFNR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLGK 170

Query: 78  SCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDID 117
           + L             +++    S    + D I                    +L++DI 
Sbjct: 171 THLMQAIGHYRLEINPEAKVAYVSTETFTNDLIQAIRKDGMQAFRDRYRATDLILVDDIQ 230

Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
            ++  +    + FH  N++H+    +++ +   P         L SR     +  I  PD
Sbjct: 231 FIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPKLQERLISRFSMGLIADIQSPD 290

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +    ++ K     ++ + + L  YI  R   ++   E  + +    A   G+ +T   
Sbjct: 291 LETRMAILQKKAEQERMMLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITGLPMTVES 350

Query: 235 AAEVLKETQQ 244
            A +L    Q
Sbjct: 351 VAPMLDPNGQ 360


>gi|254670914|emb|CBA07496.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis alpha153]
          Length = 518

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 402 RPVIDIDLARTALQD 416


>gi|318040987|ref|ZP_07972943.1| chromosomal replication initiation protein [Synechococcus sp.
           CB0101]
          Length = 478

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 83/259 (32%), Gaps = 32/259 (12%)

Query: 12  VPDKQKNDQPKNK----EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66
           +P    +   +        +L          +R   +V      A     +    P R  
Sbjct: 114 LPGGAASASQRLPTGETPRKLAPGLNPRYVFNR--FVVGPNSRMAHAAALAVAEAPGREF 171

Query: 67  --VILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI------------ 105
             + + G  G GK+ L             ++R    S    + D I              
Sbjct: 172 NPLFICGGVGLGKTHLMQAIGHYRLEIDPEARVAYVSTETFTNDLIQAIRKDGMQKFRDR 231

Query: 106 -DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                 +L++DI  ++  +    + FH  N++H+    +++ +   P         L SR
Sbjct: 232 YRAADLILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISR 291

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                +  I  PD +    ++ K     ++ + + L  Y+  R   ++   E  + +   
Sbjct: 292 FSMGLIADIQAPDLETRMAILHKKAEHERVNLPRDLIQYLAGRFTSNIRELEGALTRAVA 351

Query: 222 LALSRGMGITRSLAAEVLK 240
            A   G+ +T    A +L 
Sbjct: 352 FASITGLPMTVESVAPMLD 370


>gi|126695929|ref|YP_001090815.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. MIT 9301]
 gi|166214688|sp|A3PBT9|DNAA_PROM0 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|126542972|gb|ABO17214.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. MIT 9301]
          Length = 464

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 84/255 (32%), Gaps = 29/255 (11%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68
            P+  +    KN+ +             R   +V      A     +    P R    + 
Sbjct: 106 FPNNSQEISSKNRSKN-PNGLNLRYVFKR--FVVGPNSRLAHAAALAVAESPGREFNPLF 162

Query: 69  LVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK-- 109
           + G  G GK+ L                     ++   +   S I +   + + D  +  
Sbjct: 163 ICGGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRNV 222

Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++DI  L+  +    + FH  N++H+  S +++ +   P         L SR    
Sbjct: 223 DLILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMG 282

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
               I  PD +    ++ K      + + + L  +I  R   ++   E    +    A  
Sbjct: 283 MTADIQPPDLETRTAILQKKAEQESMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAFASI 342

Query: 226 RGMGITRSLAAEVLK 240
            G+ +T    A +L 
Sbjct: 343 TGLPMTVQSIAPMLD 357


>gi|326560701|gb|EGE11069.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis 46P47B1]
 gi|326562316|gb|EGE12642.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis 103P14B1]
 gi|326563092|gb|EGE13365.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis 12P80B1]
 gi|326571725|gb|EGE21738.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis BC8]
 gi|326571820|gb|EGE21826.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis BC7]
 gi|326574361|gb|EGE24304.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis CO72]
 gi|326575520|gb|EGE25445.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis 101P30B1]
 gi|326578061|gb|EGE27921.1| chromosomal replication initiator protein DnaA [Moraxella
           catarrhalis O35E]
          Length = 467

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 82/245 (33%), Gaps = 32/245 (13%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87
            P   G + D  +   +   A    +      S+     + + G SG GK+ L +  + +
Sbjct: 125 LPIDPGFTFDVFIKGKSNASAYNACNELSRKESKHNYGPIFIYGSSGLGKTHLMHAMAHR 184

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDT----- 124
            +         + D                     I     ++++D+ ++  +       
Sbjct: 185 YQKYGKQFFYFTKDHFYKITLEAFRTNDIVQMEKEICQADLLIIDDVHMVSGSKAPKVTE 244

Query: 125 ---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              +LF    S       +++ +   P           SRL +   + I  PD +   ++
Sbjct: 245 ILMKLFDTF-SAGNTQKQVVLASDRPPSQMTSFGERYISRLSSCLQLSIEPPDMEMRIQI 303

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLK 240
           + K      + + ++ A Y+ Q +   +   E  + ++  +  + R   ++  L  + +K
Sbjct: 304 LEKKAQMLNLLLPRECALYMAQNLPPDVRGLEGALKRVQLSATILRNEPVSLPLVKDAIK 363

Query: 241 ETQQC 245
           +  Q 
Sbjct: 364 DQVQA 368


>gi|239616412|ref|YP_002939734.1| chromosomal replication initiator protein DnaA [Kosmotoga olearia
           TBF 19.5.1]
 gi|259645253|sp|C5CH91|DNAA_KOSOT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|239505243|gb|ACR78730.1| chromosomal replication initiator protein DnaA [Kosmotoga olearia
           TBF 19.5.1]
          Length = 447

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 28/233 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87
               + ++ +V         +   I   P   +   +  G  G GK+ L    + K    
Sbjct: 105 NANYTFENFVVGPENRVLYEVSLEISRNPGRYNPFFV-YGMVGLGKTHLLQAIAHKIMEL 163

Query: 88  ---------SRSTRFSNIAKSL--------DSILIDTRKPVLLEDIDLL---DFNDTQLF 127
                    +     +++  S+                  +L++DI  L   +    +LF
Sbjct: 164 HPEMRVLYITSEQFMNDMIDSIKYGSVRDFREHYRKKADVLLIDDIQFLIGKNGVQKELF 223

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N ++     +++ +   P         L SR +   V++I  P+ D   K+  K   
Sbjct: 224 HTFNELYDAGKQIVICSDRNPEELNGFHDRLVSRFQMGMVMEICPPEKDTRFKIAKKFAE 283

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + +   +A  +   ++ +L     ++ K+   +      I  +L  ++L 
Sbjct: 284 RESVSLPDDVAQLLADSVDGNLRILRGVIIKLIVQSSINKERIGAALTNQILA 336


>gi|72381841|ref|YP_291196.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. NATL2A]
 gi|72001691|gb|AAZ57493.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. NATL2A]
          Length = 466

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 26/228 (11%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFS 94
            +V      A     +    P R    + + G  G GK+ L              +    
Sbjct: 136 FVVGPNSRMAHAAAMAVAEAPGREFNPLFICGGVGLGKTHLMQSIGHYRLEIDPGAKVAY 195

Query: 95  NIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFHIINSIHQY 136
              ++  + LI                    +L++DI  ++  +    + FH  N++H+ 
Sbjct: 196 VSTETFTNDLIVAIRKDGMQAFRNRYREADLILVDDIQFIEGKEYTQEEFFHTFNALHEA 255

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              +++T+   P         L SR     +  I  PD +    ++ K     ++ + + 
Sbjct: 256 GRQIVLTSDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAILQKKAEHERMRLPRD 315

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           L  +I  R   ++   E    +    A   G+ +T    A +L  T Q
Sbjct: 316 LIQFIAGRFTSNIRELEGAFTRAVAFASITGLPMTVESVAPMLDPTGQ 363


>gi|170746452|ref|YP_001752712.1| chromosomal replication initiation protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170652974|gb|ACB22029.1| chromosomal replication initiator protein DnaA [Methylobacterium
           radiotolerans JCM 2831]
          Length = 498

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 82/240 (34%), Gaps = 30/240 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPS-----WPSRVVILVGPSGSGKSCLANIWSDK 87
           P    ++    ++  +   A    +   +          + L    G GK+ L +     
Sbjct: 157 PLDARLTFASFVIGRSNALAHAAAERVANHLGEGALYNPLYLHAGVGLGKTHLLHGIGHA 216

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127
           +R      I  + D  +                  +     ++L+D+  +       +  
Sbjct: 217 AREAGRRVIYLTADRFMYGFVNALKTQSALAYKERLRGIDLLILDDVQFIQGKSIQAEFG 276

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI-VKMF 186
           H IN++      +++ +   P         + SRL    VV+I+  D+     ++  ++ 
Sbjct: 277 HTINALIDAGRQVVVASDRPPTELEALDERVRSRLGGGLVVEITALDEALRVSILSARLA 336

Query: 187 ADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           A R       +  ++AAY+ + +  +    E  V+++   A   G  +T   A   +++ 
Sbjct: 337 AVRASHPGFDVSPQVAAYVARAITANGRDLEGAVNRLLAHATLTGTAVTMETAESAIRDL 396


>gi|325969850|ref|YP_004246041.1| Chromosomal replication initiator protein dnaA [Spirochaeta sp.
           Buddy]
 gi|324025088|gb|ADY11847.1| Chromosomal replication initiator protein dnaA [Spirochaeta sp.
           Buddy]
          Length = 473

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 78/231 (33%), Gaps = 26/231 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86
                  + ++      A      I   P       ++ G  G GK+ L N     I ++
Sbjct: 133 NPSYDFGNFVIGDNSAFAYNASLAIAKNPGSSYNPCLIYGGVGLGKTHLLNSIGNFIINN 192

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFH 128
                     A+   +  I++                  +L++DI  L   D    +LFH
Sbjct: 193 TPELKVMYVTAEMFTNEFIESIGSQKTQHFKNKFRKVDVLLIDDIHFLQGKDSTQEELFH 252

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    ++ T              L SR +    V +  P+ +    ++ K   +
Sbjct: 253 TFNNLYESKKQMVFTCDRPISELKNITDRLSSRFERGLNVDLQPPNYETRMAILKKKLIE 312

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           R   + +++  YI   +  ++   E  + K+   +      I+   A E+L
Sbjct: 313 RGSSMSEEILNYIATNVCTNVRDLESSLTKLIAYSELLSQEISFDKAKELL 363


>gi|294794203|ref|ZP_06759339.1| ATPase involved in DNA replication initiation [Veillonella sp.
           3_1_44]
 gi|294454533|gb|EFG22906.1| ATPase involved in DNA replication initiation [Veillonella sp.
           3_1_44]
          Length = 474

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 83/241 (34%), Gaps = 34/241 (14%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRV 66
           P K     P  + + +               D+ +  +A      A + +  +P      
Sbjct: 106 PKKPTETMPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDYNP 165

Query: 67  VILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSIL------------------ID 106
           + + GPSG GK+ L +    + K        ++ + ++ +                    
Sbjct: 166 LFIYGPSGLGKTHLMHAIGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFR 225

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               ++++DI  L+  +   T+LF+  N +   +  +++T+ T P         L SR +
Sbjct: 226 NIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQ 285

Query: 164 AATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
           A  +  +  PD +    +   +        R I ID     Y+  +   ++   +    K
Sbjct: 286 AGYIATMENPDLETRIAIFRSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTK 345

Query: 219 M 219
           +
Sbjct: 346 L 346


>gi|238018223|ref|ZP_04598649.1| hypothetical protein VEIDISOL_00047 [Veillonella dispar ATCC 17748]
 gi|237864694|gb|EEP65984.1| hypothetical protein VEIDISOL_00047 [Veillonella dispar ATCC 17748]
          Length = 525

 Score = 91.4 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 91/277 (32%), Gaps = 37/277 (13%)

Query: 7   DYSFFVPDKQ-KNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSW 59
           D     P K  +   P  + + +               D+ +  +A      A + +  +
Sbjct: 150 DEPMVAPSKTVETTTPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEY 209

Query: 60  PSWPSRVVILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSIL------------- 104
           P      + + GPSG GK+ L +    + K        ++ + ++ +             
Sbjct: 210 PGGDYNPLFIYGPSGLGKTHLMHAIGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGK 269

Query: 105 -----IDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                      ++++DI  L+  +   T+LF+  N +   +  +++T+ T P        
Sbjct: 270 LFRNTFRNIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFED 329

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLVF 211
            L SR +A  +  +  PD +    +   +        R I ID     Y+  +   ++  
Sbjct: 330 RLRSRFQAGYIATMENPDLETRIAIFRSLLEREYKKNRVIRIDNDSINYVALQFSENVRV 389

Query: 212 AEKLVDKMDNLALSRGMGITRSL--AAEVLKETQQCD 246
            +    K+   A       +  L    + L      +
Sbjct: 390 LQGAFTKLIGTASIDQRLESIDLEYTKQALAGLVHTE 426


>gi|303228570|ref|ZP_07315397.1| chromosomal replication initiator protein DnaA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230659|ref|ZP_07317409.1| chromosomal replication initiator protein DnaA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514714|gb|EFL56706.1| chromosomal replication initiator protein DnaA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516749|gb|EFL58664.1| chromosomal replication initiator protein DnaA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 539

 Score = 91.4 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 91/255 (35%), Gaps = 46/255 (18%)

Query: 19  DQPKNKEEQ-----------LFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSWPS 61
           D+P    EQ           +           G   D+ +  +A      A + +   P 
Sbjct: 166 DEPMFPVEQPQMVQTLQSTDIPIDLSSSQLNSGYRFDNYITGNANRIPFGAAQNVSEHPG 225

Query: 62  WPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSIL 104
                + + GPSG GK+ L +                   S+K  +    +I K    + 
Sbjct: 226 GDYNPLFIYGPSGLGKTHLMHAIGNAIVERYPNLKVMCTTSEKFMNLFIESIRKRQGELF 285

Query: 105 IDT---RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
            +T      +L++DI  L+  +   T+ F+  N +   +  +++T+ T P         L
Sbjct: 286 RNTFRNIDVLLIDDIQFLENKEGTKTEFFNTFNELLDNNKQIVLTSDTMPNDMDQFEERL 345

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAE 213
            SR +A  V  +  PD +    ++  +       +R + ID     Y+  + + ++   +
Sbjct: 346 RSRFQAGYVATMENPDLETRIAILKALVEKENNKNRNLVIDNDAINYVALQFDENIRVLQ 405

Query: 214 KLVDKM-DNLALSRG 227
              +K+    +L + 
Sbjct: 406 GAFNKLIGTASLEQR 420


>gi|218283256|ref|ZP_03489317.1| hypothetical protein EUBIFOR_01906 [Eubacterium biforme DSM 3989]
 gi|218216011|gb|EEC89549.1| hypothetical protein EUBIFOR_01906 [Eubacterium biforme DSM 3989]
          Length = 452

 Score = 91.4 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 84/240 (35%), Gaps = 35/240 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI----DSWPSWPSRVVILVGPSGSGKSCLANI-----WS 85
               + ++ +  ++  +A            S     ++L G SG GK+ L +        
Sbjct: 108 NPSYTFENFVEGNSNAEAYAACLACCTQTTSHLFNPLMLYGNSGLGKTHLLHAMGNYLAK 167

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP--------------------VLLEDIDLL---DFN 122
           +          +  L S+LI+  K                      L++DI  L     +
Sbjct: 168 EHPECKVIYMYSGDLVSLLIEAMKTKNVHGNTVERVKEQLLDCDYFLIDDIQNLQQHSSS 227

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
               F + N + Q ++ +++T+   P         L SR  +   + IS P+ +  + ++
Sbjct: 228 QEIFFTVYNQLIQKNTQIIITSDMHPSEISGLQSRLISRFVSGLTISISKPEFETSKAIL 287

Query: 183 VKMFADR--QIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVL 239
            K    R   + + + +  Y+  +    +   E  ++++  N  L     I    A +VL
Sbjct: 288 KKKIEGREEGVNMSEDVIDYLAGKYSNDVRNLEGTLNRLIFNATLFNPDVIDMDFARKVL 347


>gi|161869312|ref|YP_001598479.1| chromosomal replication initiation protein [Neisseria meningitidis
           053442]
 gi|161594865|gb|ABX72525.1| chromosomal replication initiator protein [Neisseria meningitidis
           053442]
          Length = 468

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 112 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 171

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 172 GSTGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 231

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 232 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 291

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 292 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 351

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 352 RPVIDIDLARTALQD 366


>gi|78778950|ref|YP_397062.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. MIT 9312]
 gi|123755112|sp|Q31BW9|DNAA_PROM9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78712449|gb|ABB49626.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. MIT 9312]
          Length = 464

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 23/197 (11%)

Query: 67  VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109
           + + G  G GK+ L                     ++   +   S I +   + + D  +
Sbjct: 161 LFICGGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYR 220

Query: 110 ---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++DI  L+  +    + FH  N++H+  S +++ +   P         L SR  
Sbjct: 221 NVDLILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFS 280

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                 I  PD +    ++ K     ++ + + L  +I  R   ++   E    +    A
Sbjct: 281 MGMTADIQPPDLETRTAILQKKAEQERMNLPRDLIQFIAGRFTSNIRELEGAFTRAVAFA 340

Query: 224 LSRGMGITRSLAAEVLK 240
              G+ +T    A +L 
Sbjct: 341 SITGLPMTVQSIAPMLD 357


>gi|320332619|ref|YP_004169330.1| Chromosomal replication initiator protein dnaA [Deinococcus
           maricopensis DSM 21211]
 gi|319753908|gb|ADV65665.1| Chromosomal replication initiator protein dnaA [Deinococcus
           maricopensis DSM 21211]
          Length = 455

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 94/258 (36%), Gaps = 35/258 (13%)

Query: 20  QPKNKEEQLFFSFPR---------CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---V 67
            P+ +        P              + ++ +V      A     +    P R    +
Sbjct: 90  PPRTRALPGPAPLPVGSGENRKSLNPKYTFENFVVGPNNNLAHAAALAVAESPGRAYNPL 149

Query: 68  ILVGPSGSGKSCLANI----WSDKSRSTRFSNIA-KSLDSILIDTRK------------- 109
            + G  G GK+ L +      +++    R   ++ +S  + LI+  +             
Sbjct: 150 FIYGDVGLGKTHLMHAVGHYIAERYPDKRIEYLSTESFTNELINAIRDDKMTQFRNKYRS 209

Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +L++DI  L   +    + FH  N++++    +++++   P         L SR + 
Sbjct: 210 VDLLLVDDIQFLAGKERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEW 269

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             +  I  P+ +    ++      R I I + +   + +++  ++   E  + ++   + 
Sbjct: 270 GLITDIQSPEFETRVAILKMNAEHRHIDIPQDVLEQVARQVTSNIRELEGALMRVVAFSS 329

Query: 225 SRGMGITRSLAAEVLKET 242
              +  +R++AA+ L + 
Sbjct: 330 LNNVPFSRAVAAKALSDV 347


>gi|262363789|gb|ACY60510.1| chromosomal replication initiator protein [Yersinia pestis D106004]
          Length = 231

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   +L++DI      +    + FH  N++ + +  +++T+  +P         L SR  
Sbjct: 15  SVDALLIDDIPFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFG 74

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I  P+ +    +++K   +  I +  ++A +I +R+  ++   E  ++++   A
Sbjct: 75  WGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANA 134

Query: 224 LSRGMGITRSLAAEVLKET 242
              G  IT     E L++ 
Sbjct: 135 NFTGRAITIDFVREALRDL 153


>gi|154148526|ref|YP_001405623.1| chromosomal replication initiator protein DnaA [Campylobacter
           hominis ATCC BAA-381]
 gi|153804535|gb|ABS51542.1| chromosomal replication initiator protein DnaA [Campylobacter
           hominis ATCC BAA-381]
          Length = 437

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 34/235 (14%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN---IWSDKSRS 90
             S ++ +V  +   A     +    P      + + G SG GK+ L      +  K   
Sbjct: 104 SFSFENFIVGDSNRFAYTCAKAVAENPGERYNPLFIYGNSGLGKTHLLQSIGNYCIKDGK 163

Query: 91  TRFSNIAKSLDSILIDTRKPVLLEDIDL--------------------LDFNDTQLFHII 130
                 ++   + L    +    +                           ++  LFH  
Sbjct: 164 FVICVTSEQFANELKFHIETNSTDKFKEKYRTCDLLLIDDIQLLSTRKAAIDE--LFHTF 221

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +   +  +++T    P         L SR ++  V  I+ PD +    ++ K      
Sbjct: 222 NELKNKNCQIVITNDKPPQLLKDFESRLVSRFESGLVANINPPDLNTKIGILTKKAGLNG 281

Query: 191 IFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           + ++K +  YI   +    R +      +      +L     I+       LK++
Sbjct: 282 LTLNKDVIEYIAANLGDNVREMEGILTQIRA--YQSLIN-TEISLDFVKANLKDS 333


>gi|240120386|ref|ZP_04733348.1| chromosomal replication initiation protein [Neisseria gonorrhoeae
           PID24-1]
          Length = 468

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 112 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 171

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 172 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 231

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 232 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 291

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 292 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 351

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 352 RPVIDIDLARTALQD 366


>gi|148244170|ref|YP_001218864.1| chromosomal replication initiator protein DnaA [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146325997|dbj|BAF61140.1| chromosomal replication initiator protein DnaA [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 430

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 86/217 (39%), Gaps = 31/217 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
           P     + ++L++ +A + A     ++ ++  + P    I+ G SG GK+ L       +
Sbjct: 87  PLFEDYTFNNLVLGNANQMAYGATKQIAENIKTSPYNPFIIYGKSGLGKTHLMQAAGHLA 146

Query: 89  RSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQ 125
           +                  NI  SL    I+       +   +L++DI L+   +    +
Sbjct: 147 KEKNPNIKIIYVPLMDFVRNITSSLRHNTIENIKNFYQSTDLLLVDDIHLIAGKEKSQEE 206

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVK 184
            FHI N +      ++ T    P +    L D L +R      + ++ P+ +    +++K
Sbjct: 207 FFHIFNFLFSGKKQIIFTCDQPPKNIK-SLEDRLKTRFSQGLNLHLTPPELEMRAAILLK 265

Query: 185 MFADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKM 219
              +++I I   +  A +I   +  ++   E  + K+
Sbjct: 266 KSQNKRININLTEDTALFIASHIASNIRDLEGALLKL 302


>gi|71064582|ref|YP_263309.1| chromosomal replication initiator protein DnaA [Psychrobacter
           arcticus 273-4]
 gi|71037567|gb|AAZ17875.1| probable bacterial chromosomal replication initiator protein
           [Psychrobacter arcticus 273-4]
          Length = 481

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 77/232 (33%), Gaps = 25/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI----DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88
               + +  +   +   A +                + + GPSG GK+ L +  + +   
Sbjct: 147 NPDFTFETFVTGKSNNLAYKACYELGKRQSKNRHNPLFIYGPSGLGKTHLMHSVAHRYLK 206

Query: 89  --------------RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHI 129
                             +S     ++     I     ++++DI +L     +  +   +
Sbjct: 207 NNQTFYYFTSEKFINQLVYSLRNNKIEDFKKKIKKVDLLIVDDIHVLAGKTKSSNEFLTL 266

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
                  D  L++ +   P           SR      V +  P+ D   +++ K  A  
Sbjct: 267 FADFTSGDKQLILASDRHPSQMTEFDERFRSRFSWGLTVAVDPPEIDTRVQILQKKAASY 326

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            + + K+ A +I Q +  ++   E  ++++   A   G  IT  +    LK+
Sbjct: 327 GMSLPKECALFIAQNVVSNVRRLEGALNQVFANANLTGAPITLEMVQYALKD 378


>gi|254804280|ref|YP_003082501.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis alpha14]
 gi|254667822|emb|CBA03812.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis alpha14]
 gi|261393234|emb|CAX50857.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis 8013]
 gi|325204854|gb|ADZ00308.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis M01-240355]
          Length = 518

 Score = 91.4 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 402 RPVIDIDLARTALQD 416


>gi|254671988|emb|CBA04453.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis alpha275]
          Length = 518

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 402 RPVIDIDLARTALQD 416


>gi|124025331|ref|YP_001014447.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. NATL1A]
 gi|166214689|sp|A2C122|DNAA_PROM1 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123960399|gb|ABM75182.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. NATL1A]
          Length = 464

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 26/228 (11%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFS 94
            +V      A     +    P R    + + G  G GK+ L              +    
Sbjct: 134 FVVGPNSRMAHAAAMAVAEAPGREFNPLFICGGVGLGKTHLMQSIGHYRLEIDPGAKVAY 193

Query: 95  NIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFHIINSIHQY 136
              ++  + LI                    +L++DI  ++  +    + FH  N++H+ 
Sbjct: 194 VSTETFTNDLIVAIRKDGMQAFRNRYREADLILVDDIQFIEGKEYTQEEFFHTFNALHEA 253

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              +++T+   P         L SR     +  I  PD +    ++ K     ++ + + 
Sbjct: 254 GRQIVLTSDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAILQKKAEHERMRLPRD 313

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           L  +I  R   ++   E    +    A   G+ +T    A +L  T Q
Sbjct: 314 LIQFIAGRFTSNIRELEGAFTRAVAFASITGLPMTVESVAPMLDPTGQ 361


>gi|313640132|gb|EFS04749.1| chromosomal replication initiator protein DnaA [Listeria seeligeri
           FSL S4-171]
          Length = 287

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 60/177 (33%), Gaps = 26/177 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             N+++     +++++   P         L SR +   +  I+ PD +    ++ K 
Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK 287


>gi|296314155|ref|ZP_06864096.1| DNA replication initiator protein [Neisseria polysaccharea ATCC
           43768]
 gi|296839190|gb|EFH23128.1| DNA replication initiator protein [Neisseria polysaccharea ATCC
           43768]
          Length = 518

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 402 RPVIDIDLARTALQD 416


>gi|218767523|ref|YP_002342035.1| chromosomal replication initiation protein [Neisseria meningitidis
           Z2491]
 gi|14194677|sp|Q9JW45|DNAA_NEIMA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|121051531|emb|CAM07828.1| putative chromosomal replication initiator protein [Neisseria
           meningitidis Z2491]
 gi|308389997|gb|ADO32317.1| putative chromosomal replication initiator protein [Neisseria
           meningitidis alpha710]
 gi|319409787|emb|CBY90095.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis WUE 2594]
          Length = 518

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 402 RPVIDIDLARTALQD 416


>gi|325127478|gb|EGC50407.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis N1568]
          Length = 518

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 402 RPVIDIDLARTALQD 416


>gi|121634189|ref|YP_974434.1| putative chromosomal replication initiator protein [Neisseria
           meningitidis FAM18]
 gi|166214686|sp|A1KS02|DNAA_NEIMF RecName: Full=Chromosomal replication initiator protein DnaA
 gi|120865895|emb|CAM09631.1| putative chromosomal replication initiator protein [Neisseria
           meningitidis FAM18]
 gi|325131541|gb|EGC54248.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis M6190]
 gi|325135494|gb|EGC58112.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis M0579]
 gi|325139204|gb|EGC61750.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis ES14902]
 gi|325197601|gb|ADY93057.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis G2136]
 gi|325201462|gb|ADY96916.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis M01-240149]
 gi|325207443|gb|ADZ02895.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis NZ-05/33]
          Length = 518

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 402 RPVIDIDLARTALQD 416


>gi|325200955|gb|ADY96410.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis H44/76]
          Length = 502

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 80/252 (31%), Gaps = 31/252 (12%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73
           + D  + + EQ           + D L+       A     +    P +      L G +
Sbjct: 153 QRDAEEARYEQTNL----SPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGST 208

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVLL 113
           G GK+ L     ++    R     + + S                            +++
Sbjct: 209 GLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLII 268

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  +   D    + F++ N  H     L++T    P         L SR      +++
Sbjct: 269 DDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLEL 328

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
             P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +       
Sbjct: 329 EPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPV 388

Query: 230 ITRSLAAEVLKE 241
           I   LA   L++
Sbjct: 389 IDIDLARTALQD 400


>gi|254472133|ref|ZP_05085533.1| chromosomal replication initiator protein DnaA [Pseudovibrio sp.
           JE062]
 gi|211958416|gb|EEA93616.1| chromosomal replication initiator protein DnaA [Pseudovibrio sp.
           JE062]
          Length = 489

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 74/239 (30%), Gaps = 28/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91
                 D  +   +   A+                + L    G GK+ L    ++++R  
Sbjct: 152 DPKYVFDSFVEGESNVLALAAAKQVAGGGVVTFNPLYLHASVGLGKTHLMQAIANQARMA 211

Query: 92  RFSNIAKSLDSILIDTRKPV----------LLEDIDLLDFNDTQLFH----------IIN 131
               +  + +  +      +           L  IDLL  +D Q  H           +N
Sbjct: 212 GRRVLYLTAEHFMYRFVAALQAQSAMSFKETLRSIDLLLIDDMQFLHGKQVQQEFCHTLN 271

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ- 190
           ++      +++ A   P         + SRL    VV IS PD      +I      +Q 
Sbjct: 272 ALIDGARQVVVAADRAPAELESLDDRVRSRLAGGLVVNISEPDFQLRRAIIEDRMRAQQR 331

Query: 191 ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                 +   +  Y+ + +  S    E  ++++          +T  +A   L++  + 
Sbjct: 332 SYPNFTVPDAVLDYVARNVTSSGRDLEGALNRLVAHNQLTNSPVTLEMAEITLRDLIRA 390


>gi|87123971|ref|ZP_01079821.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           RS9917]
 gi|86168540|gb|EAQ69797.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           RS9917]
          Length = 466

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 30/230 (13%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-------------- 85
            +V      A     +    P R    + + G  G GK+ L                   
Sbjct: 136 FVVGPNSRMAHAAALAVAESPGREFNPLFICGGVGLGKTHLMQAIGHYRLEIDPDARVSY 195

Query: 86  --------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIH 134
                   D  ++ R   +    D         +L++DI  ++  +    + FH  N++H
Sbjct: 196 VSTETFTNDLIQAIRKDGMQAFRDR--YRATDLILVDDIQFIEGKEYTQEEFFHTFNALH 253

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           +    +++ +   P         L SR     +  I  PD +    ++ K     ++ + 
Sbjct: 254 EAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAILQKKAEQERVTLP 313

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + L  YI  R   ++   E  + +    A   G+ +T    A +L  + Q
Sbjct: 314 RDLIQYISGRFTSNIRELEGALTRAVAFASITGLPMTVESVAPMLDPSGQ 363


>gi|325143614|gb|EGC65933.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis M01-240013]
          Length = 518

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70
            K + D  ++ EE  +         + D L+       A     +    P +      L 
Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110
           G +G GK+ L     ++    R     + + S                            
Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           ++++DI  +   D    + F++ N  H     L++T    P         L SR      
Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +    
Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401

Query: 228 MG-ITRSLAAEVLKE 241
              I   LA   L++
Sbjct: 402 RPVIDIDLARTALQD 416


>gi|228968641|ref|ZP_04129624.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228791070|gb|EEM38688.1| Chromosomal replication initiator protein dnaA [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 291

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 72/211 (34%), Gaps = 35/211 (16%)

Query: 10  FFVPDKQKNDQ------PKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60
           F +P  Q  +        +N  +      P        + D  ++ S    A     +  
Sbjct: 78  FIIPQSQAEEDIDLPPVKRNPAQDDSAHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137

Query: 61  SWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK--- 109
             P++    + + G  G GK+ L +     +      +      ++   +  I++ +   
Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNK 197

Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        +L++DI  L   +    + FH  N++H+    +++++   P      
Sbjct: 198 AVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTL 257

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
              L SR +   +  I+ PD +    ++ K 
Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKK 288


>gi|323697422|ref|ZP_08109334.1| chromosomal replication initiator protein DnaA [Desulfovibrio sp.
           ND132]
 gi|323457354|gb|EGB13219.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           desulfuricans ND132]
          Length = 453

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 34/262 (12%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCL------GISRDDLLVHSAIEQAVRLIDS--WPSWPSRV 66
           KQ    P  +   L                S DD +V  + E A     S    ++ S  
Sbjct: 93  KQAVAAPAPRHMGLPLGQTLKPVTVSNWRFSFDDFVVGPSNELACAASKSIGSSAFNSDH 152

Query: 67  VILVGPSGSGKSCLANI-----------------------WSDKSRSTRFSNIAKSLDSI 103
           + L    G GK+ L                          ++ +      S       + 
Sbjct: 153 LFLSSGPGLGKTHLLQSVGNELCRTANRKHLKVACLSSEEFATRWVLAFKSGQVDQFKAQ 212

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                  +LLED+      +    +L   + ++ +    +++T+   P  +      L S
Sbjct: 213 FRQGIDVLLLEDVHFFQGKEKMQEELLCTLTALRERGCKVVLTSSFMPKEFSKVDDRLVS 272

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R  +  +  I+ PD +   ++I+      Q+ +  +++  + +R+   +   E  ++ + 
Sbjct: 273 RFCSGFLAHINRPDMETRRRIILDKARRMQVAVPGEVSELLAERITTDIRQLESCLNNLI 332

Query: 221 NLALSRGMGITRSLAAEVLKET 242
             A      +T +LA EVL+  
Sbjct: 333 LKARLLNRDVTMNLAWEVLENY 354


>gi|255994571|ref|ZP_05427706.1| ATPase involved in DNA replication initiation [Eubacterium saphenum
           ATCC 49989]
 gi|255993284|gb|EEU03373.1| ATPase involved in DNA replication initiation [Eubacterium saphenum
           ATCC 49989]
          Length = 455

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 78/236 (33%), Gaps = 29/236 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84
               + D+ +V      A  +   I +          L G  G GK+ L +         
Sbjct: 119 NPKYTFDNFVVGDNNRHAHAVALSIANSEISEYNPFFLYGGPGLGKTHLMHAIGMTIMKN 178

Query: 85  ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128
                     ++   +   ++I KS      +  + V   L++DI  +   +    + FH
Sbjct: 179 FPYKKVLYVPAETFTTDLINSIRKSSQEEFKNKYRMVDVLLIDDIQFMQGKESTQEEFFH 238

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             NS+ +    +++++   P         L SR        I   + +    ++ K    
Sbjct: 239 TFNSLTRLGKQIVISSDRSPNHLNKLDERLRSRFMQNVTTDIKPANFETRVAILQKKCEI 298

Query: 189 RQIFIDK---KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
               +D    ++   I   ++ ++   E  + K+ + +      IT   A + L E
Sbjct: 299 ENFEVDANLNEVINLIAHNIDNNIRALEGALTKLISFSRLLNEKITIDYAKKNLPE 354


>gi|255021121|ref|ZP_05293174.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969535|gb|EET27044.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus
           caldus ATCC 51756]
          Length = 234

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 66/190 (34%), Gaps = 11/190 (5%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--------STRFSNIAKSLDSILIDTRKPVLLEDIDL 118
             + GP+  GK+ L    +            +   +            +   + L+++  
Sbjct: 45  AFVHGPAAVGKTHLLQWLALARGSWNPYLDCAEASAASLCGAAEECWCSAALLCLDNVAA 104

Query: 119 LDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
              +   ++ L+ I N   +     ++ AR  P      LPD  SR  A   V + +PD+
Sbjct: 105 WAGDRQAESWLYRIYNGRRERRRPTVLAARQAPAEIAWALPDWASRASALVPVALGVPDE 164

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
             +  ++ ++ A + +     L  ++++   R L     L+D+       R    + +  
Sbjct: 165 AGIRAILQQVGARQGMAWPDALLDHLLRHHTRDLGALLVLLDEFAAWLWQRHGRPSPARL 224

Query: 236 AEVLKETQQC 245
            + L      
Sbjct: 225 RQFLASRGMP 234


>gi|72160407|ref|YP_288064.1| chromosomal replication initiation protein [Thermobifida fusca YX]
 gi|123774818|sp|Q47U23|DNAA_THEFY RecName: Full=Chromosomal replication initiator protein DnaA
 gi|71914139|gb|AAZ54041.1| bacterial chromosomal replication initiator protein, DnaA
           [Thermobifida fusca YX]
          Length = 615

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 93/252 (36%), Gaps = 34/252 (13%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSG 74
            +      +QL          + D  ++ S+      A   +   P+     + + G SG
Sbjct: 261 TNPTSGGPDQL------NPKYTFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFVYGGSG 314

Query: 75  SGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRK---------------PVLLE 114
            GK+ L +     +      +      ++   +  I++ +                +L++
Sbjct: 315 LGKTHLLHAIGHYTQRLYEGARVRYVSSEEFTNEFINSIRDGKADGFRRRYRDIDVLLVD 374

Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKI 170
           DI  L+  +    + FH  N++H  +  +++++   P    V L D L +R +   +  +
Sbjct: 375 DIQFLENKEQTQEEFFHTFNTLHNSNKQIVISSDRPPKQL-VTLEDRLRNRFEWGLITDV 433

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             P+ +    ++ K  A   +    ++  +I  ++  ++   E  + ++   A      +
Sbjct: 434 QPPELETRIAILRKKAAQEGLNAPPEVLEFIASKISTNIRELEGALIRVTAFASLNRQSV 493

Query: 231 TRSLAAEVLKET 242
              L + VL++ 
Sbjct: 494 DLHLTSIVLRDL 505


>gi|116617175|ref|YP_817546.1| chromosomal replication initiator protein DnaA [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|227432906|ref|ZP_03914850.1| DNA-directed DNA replication initiator protein [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|116096022|gb|ABJ61173.1| DNA replication ATPase initiation [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227351339|gb|EEJ41621.1| DNA-directed DNA replication initiator protein [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 448

 Score = 91.0 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 82/240 (34%), Gaps = 36/240 (15%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSR-- 89
               + +  ++ S  E A  +  +    P +V    ++ G  G GK+ L     +     
Sbjct: 110 NPDFTFEKFVIGSGNENAYAVARAVADEPGQVYNPYLIYGGVGLGKTHLMQAIGNAYAVS 169

Query: 90  ---STRFSNIAKSLDSILIDTRKP-----------------VLLEDIDLLDFND---TQL 126
              +      A+   +   ++ +                  +L++DI      +    + 
Sbjct: 170 TPSAHIKYATAEDFLNDFTESLRAGDGATAAFKQEYRSVDLLLVDDIQFWSGKEKVQEEF 229

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N + +    ++MT+   P         L SR +A  ++ I  PD      ++  + 
Sbjct: 230 FNTFNVLTKNGKQIVMTSDKLPTEIVDLQTRLTSRFEAGIMMDIQKPDLPTRVAILQNLS 289

Query: 187 ADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALS-RGMGITRSLAAEVLKET 242
               + I   +   I ++++   RSL  A    +     +L       T+  A ++L + 
Sbjct: 290 ESDGLDIPNDVLELIAEKIDSNVRSLEGAFHKFE----ASLRYMNKPATKETAQQILGDL 345


>gi|403535|gb|AAA18927.1| DnaA [Caulobacter crescentus CB15]
          Length = 490

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 32/238 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI--WSDKSR 89
               + +  +   A E A  +   I +W       V+  GP G GK+ L N   W     
Sbjct: 150 QERFTFETFVPGPANEFAHAVARRIANWADGHFNPVLFHGPYGFGKTHLLNALAWEAMRN 209

Query: 90  STRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDF---NDTQLFH 128
           +     +  + +  L                  +     ++++D+  +        +LFH
Sbjct: 210 APEKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRAADLLIIDDVHFIAGKQSTQEELFH 269

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            + ++      ++ +A   P +       L S L A  V  +   D +    ++ +    
Sbjct: 270 TLTALVGEGGRVVFSADRPPSAMTEMDAHLRSHLSAGLVCGLEPADRNLRLGILERKIQT 329

Query: 189 RQIFID------KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
               +        ++  ++  R   S+   E  ++ +   A      +T      +L+
Sbjct: 330 LGAALGFEPSIRPEVMQFLADRFTDSVRELEGALNTLSARAGEGLSRMTLDEVQAILR 387


>gi|309379985|emb|CBX21396.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 105

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           +L+ +   P    V   DL +R+    V ++    D      +  M A RQ+ +D ++  
Sbjct: 1   MLLGSEYTPQQL-VIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFE 59

Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           Y+++   R +     ++D +DN A++ G  IT  L  ++LK+ +
Sbjct: 60  YLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 103


>gi|269118643|ref|YP_003306820.1| chromosomal replication initiator protein DnaA [Sebaldella
           termitidis ATCC 33386]
 gi|268612521|gb|ACZ06889.1| chromosomal replication initiator protein DnaA [Sebaldella
           termitidis ATCC 33386]
          Length = 452

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 83/244 (34%), Gaps = 38/244 (15%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI-------- 83
                 ++ +V    E A     +    P      +++ G SG GK+ L +         
Sbjct: 110 NQRYRFENFVVGKGNELANAACIAISQNPGIVYNPLLIYGGSGLGKTHLMHAVGNAILDK 169

Query: 84  -----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--------L 118
                            + +  R+ +F+N+    D     T   +L++DI          
Sbjct: 170 DPNKKVLYCTSENFNNEFINSLRAGQFANVQNFRDK--FRTLDVLLIDDIQFFEKVFGQG 227

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
               + + FH  N++ +    ++M++   P         + SR  +   V +  PD +  
Sbjct: 228 TGSVEEEFFHTFNTLQELGKQIIMSSDRLPREIRNLSKRIESRFDSGLSVDVQKPDYETR 287

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             ++  +   + + I  ++  +I   +  ++   E  + ++   +      IT  L  E 
Sbjct: 288 LAILKNIADSKSVIISDEVLEFISSSISSNIRELEGALTRVIARSTLLRKAITLQLVQED 347

Query: 239 LKET 242
           L + 
Sbjct: 348 LADL 351


>gi|221135255|ref|ZP_03561558.1| Chromosomal replication initiator protein dnaA [Glaciecola sp.
           HTCC2999]
          Length = 267

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 107 TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   +L++DI        +  + FH  N++ + +  +++T+  +P         L SR  
Sbjct: 28  SVDALLIDDIQFFAGKDRSQEEFFHTFNALLEGNQQIILTSDKYPKEIQGVEDRLKSRFG 87

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               + I  P+ +    ++++   + +I +  ++A +I +R+  ++   E  ++++   A
Sbjct: 88  WGLTIAIEPPELETRVAILMRKAEENKIKLPNEVAFFIAKRLRTNVRELEGALNRVIANA 147

Query: 224 LSRGMGITRSLAAEVLKET 242
              G  I+     E L++ 
Sbjct: 148 NFTGREISIDFVREALRDL 166


>gi|558140|gb|AAA85913.1| putative [Synechocystis sp.]
          Length = 446

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 76/219 (34%), Gaps = 30/219 (13%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSL 100
            +++  A       P      + L G  G GK+ L    +         +  +    +  
Sbjct: 126 AASLAVAES-----PGREFNPLFLCGGVGLGKTHLMQAIAHYRLEMYPNAKVYYVSTERF 180

Query: 101 DSILIDT---------------RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLM 142
            + LI                    +L++DI  +   +    + FH  NS+H+    +++
Sbjct: 181 TNDLITAIRQDNMEDFRSYYRSADFLLIDDIQFIKGKEYTQEEFFHTFNSLHEAGKQVVV 240

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
            +   P         L SR     +  I +PD +    ++ K     +I + K++  YI 
Sbjct: 241 ASDRAPQRIPGLQDRLISRFSMGLIADIQVPDLETRMAILQKKAEYDRIRLPKEVMEYIA 300

Query: 203 QRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLK 240
                ++   E  L+  +   +LS  + +T    A VL 
Sbjct: 301 SHYTSNIRELEGALIRAIAYTSLSN-VAMTVENIAPVLN 338


>gi|16124264|ref|NP_418828.1| chromosomal replication initiator protein DnaA [Caulobacter
           crescentus CB15]
 gi|221232947|ref|YP_002515383.1| chromosomal replication initiation protein [Caulobacter crescentus
           NA1000]
 gi|239977204|sp|B8GWW5|DNAA_CAUCN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|239977205|sp|P0CAU4|DNAA_CAUCR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|13421094|gb|AAK21996.1| chromosomal replication initiator protein DnaA [Caulobacter
           crescentus CB15]
 gi|220962119|gb|ACL93475.1| chromosomal replication initiator protein DnaA [Caulobacter
           crescentus NA1000]
          Length = 490

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 76/238 (31%), Gaps = 32/238 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI--WSDKSR 89
               + +  +   A E A  +   I +W       V+  GP G GK+ L N   W     
Sbjct: 150 QERFTFETFVPGPANEFAHAVARRIANWADGHFNPVLFHGPYGFGKTHLLNALAWEAMRN 209

Query: 90  STRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDF---NDTQLFH 128
           +     +  + +  L                  +     ++++D+  +        +LFH
Sbjct: 210 APEKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRAADLLIIDDVHFIAGKQSTQEELFH 269

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            + ++      ++ +A   P +       L S L A  V  +   D +    ++ +    
Sbjct: 270 TLTALVGEGGRVVFSADRPPSAMTEMDAHLRSHLSAGLVCGLEPADRNLRLGILERKIQT 329

Query: 189 RQIF------IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                     I  ++  ++  R   S+   E  ++ +   A      +T      +L+
Sbjct: 330 LGAAHGFEPSIRPEVMQFLADRFTDSVRELEGALNTLSARAGEGLSRMTLDEVQAILR 387


>gi|315222844|ref|ZP_07864729.1| replication initiator protein DnaA [Streptococcus anginosus F0211]
 gi|315188080|gb|EFU21810.1| replication initiator protein DnaA [Streptococcus anginosus F0211]
          Length = 447

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 79/248 (31%), Gaps = 36/248 (14%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + D+ +           A+ + ++  +     + + G  G GK+ L N  
Sbjct: 104 PIETGLKAKYTFDNFVQGDGNVWALSAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 162

Query: 85  SDKSRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF--- 121
            ++          K + +                        +   +L++DI  L     
Sbjct: 163 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMESFKRTYRSLDLLLIDDIQSLGGKKV 222

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + F+  N++H  +  +++T+   P         L +R K      I+ PD +    
Sbjct: 223 STQEEFFNTFNALHGDNKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 282

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG----MGITRSLAA 236
           ++     D           Y+  + + ++   E  ++ +   +L         IT   AA
Sbjct: 283 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDI---SLMARVKNLKEITIDAAA 339

Query: 237 EVLKETQQ 244
           E ++  +Q
Sbjct: 340 EAIRARKQ 347


>gi|89898823|ref|YP_521294.1| chromosomal replication initiation protein [Rhodoferax
           ferrireducens T118]
 gi|89343560|gb|ABD67763.1| chromosomal replication initiator protein DnaA [Rhodoferax
           ferrireducens T118]
          Length = 470

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 76/199 (38%), Gaps = 23/199 (11%)

Query: 67  VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR------------- 108
           + + G  G GK+ L +       +D+  +      A+   S ++                
Sbjct: 171 LFIYGGVGLGKTHLMHAVGNRLLADQPNAKVLYIHAEQFVSDVVKAYQRKTFDEFKERYH 230

Query: 109 --KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++D+      +    + F+   ++    S ++MT+ T+P         L SR  
Sbjct: 231 SLDLLLIDDVQFFANKERTQEEFFNAFEALLAKKSHIVMTSDTYPKGLTDIHERLVSRFD 290

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   V I  P+ +    +++       I + +++A ++ + +  ++   E  + K+   +
Sbjct: 291 SGLTVAIEPPELEMRVAILINKARVEGIVMPEEVAFFVAKNVRSNVRELEGALRKILAYS 350

Query: 224 LSRGMGITRSLAAEVLKET 242
                 I+  LA E L++ 
Sbjct: 351 RFNQKDISILLAREALRDL 369


>gi|241759452|ref|ZP_04757556.1| chromosomal replication initiator protein DnaA [Neisseria
           flavescens SK114]
 gi|241320234|gb|EER56567.1| chromosomal replication initiator protein DnaA [Neisseria
           flavescens SK114]
          Length = 522

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 80/253 (31%), Gaps = 31/253 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGP 72
            ++D  + + EQ           + + L+       A     +    P        L G 
Sbjct: 172 AQHDAEEARYEQTNL----SRDYTFETLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYGS 227

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVL 112
           +G GK+ L     ++    R     + + S                            ++
Sbjct: 228 TGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLI 287

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  +   D    + F++ N  H     L++T    P         L SR      ++
Sbjct: 288 IDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLE 347

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           +  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +      
Sbjct: 348 LEPPELEMRVAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRP 407

Query: 230 -ITRSLAAEVLKE 241
            I   LA   L++
Sbjct: 408 AIDMDLARTALQD 420


>gi|15677734|ref|NP_274897.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis MC58]
 gi|14194678|sp|Q9JXS7|DNAA_NEIMB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|7227160|gb|AAF42233.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis MC58]
 gi|316985519|gb|EFV64466.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis H44/76]
 gi|325133542|gb|EGC56205.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis M13399]
 gi|325206810|gb|ADZ02263.1| chromosomal replication initiator protein DnaA [Neisseria
           meningitidis M04-240196]
          Length = 518

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 80/252 (31%), Gaps = 31/252 (12%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73
           + D  + + EQ           + D L+       A     +    P +      L G +
Sbjct: 169 QRDAEEARYEQTNL----SPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGST 224

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVLL 113
           G GK+ L     ++    R     + + S                            +++
Sbjct: 225 GLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLII 284

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  +   D    + F++ N  H     L++T    P         L SR      +++
Sbjct: 285 DDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLEL 344

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
             P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +       
Sbjct: 345 EPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPV 404

Query: 230 ITRSLAAEVLKE 241
           I   LA   L++
Sbjct: 405 IDIDLARTALQD 416


>gi|170016359|ref|YP_001727278.1| chromosomal replication initiator protein DnaA [Leuconostoc citreum
           KM20]
 gi|169803216|gb|ACA81834.1| Chromosomal replication initiator protein DnaA [Leuconostoc citreum
           KM20]
          Length = 448

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 36/240 (15%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST 91
               + D  +V +  E A  +  +    P RV    ++ G  G GK+ L     +    T
Sbjct: 110 NENFTFDKFVVGTGNENAYAIARAVAEDPGRVYNPYLIYGGVGLGKTHLMQAIGNAYSKT 169

Query: 92  R-------------FSNIAKSLDSILIDTRK---------PVLLEDIDLLDFND---TQL 126
                          ++  +SL +    T            +L++DI      +    + 
Sbjct: 170 TPSARIKYATAEDFLNDFTESLRAGEGATAAFKKEYRTVDLLLIDDIQFWSGKEKVQEEF 229

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVI 182
           F+  N + +    ++MT+   P        DL SRL     A   + I  PD      ++
Sbjct: 230 FNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLTSRFEAGISMDIQKPDLPTRVAIL 285

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +     + I   +   I  +++ ++   E    + + +   R    T+  A ++L + 
Sbjct: 286 KNLAETDGLTIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRFRNKPATKETAQQILGDL 345


>gi|312112796|ref|YP_004010392.1| chromosomal replication initiator protein DnaA [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311217925|gb|ADP69293.1| chromosomal replication initiator protein DnaA [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 497

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 81/220 (36%), Gaps = 33/220 (15%)

Query: 33  PRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSD 86
           P     +    +V S        A ++ +S P  P +   + +    G GK+ L +  + 
Sbjct: 150 PLDPRYTFQSFVVGSPNRLAHAAAFQVAESTPEQPLKYNPLYIHARVGMGKTHLLHAIAW 209

Query: 87  KSRST----------------RFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFN--DT 124
           + ++                  F+   ++ D+      + T   ++++D++ L       
Sbjct: 210 EMKARNPNAKVLYLTAERFMYSFAEALQTRDAPAFKEKLRTIDLLIIDDMEFLQGRTFQQ 269

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H +NS+      +++ A   P+        + SRL    V ++S  D D   K++ +
Sbjct: 270 EFCHTLNSLIDGGKQVVVAADCAPLLLESFDARMRSRLSGGLVAEMSALDFDLRLKILQR 329

Query: 185 MFAD-----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             A+     R   +   +  Y+  ++  +    E  + ++
Sbjct: 330 RAAEKISLSRGFEVPGDVLEYLATQLTENGRELEGAITRL 369


>gi|254558654|ref|YP_003065749.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Methylobacterium
           extorquens DM4]
 gi|254265932|emb|CAX21681.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Methylobacterium
           extorquens DM4]
          Length = 501

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 30/240 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWP-----SWPSRVVILVGPSGSGKSCLANIWSDK 87
           P    +S  + +V  +   A    +              + +    G GK+ L +     
Sbjct: 160 PLDARLSFANFVVGRSNALAHAAAERIARSDSDGALYNPLYVHAGVGLGKTHLLHAAGHA 219

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127
           +R      I  + D  +                  +     ++L+D+  +      T+  
Sbjct: 220 AREAGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDLLILDDVQFIQGKSIQTEFG 279

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF- 186
           H +N++      +++ +   P         + SRL    VV+I   D+     ++     
Sbjct: 280 HTLNALIDSGRQVVVASDRPPTELEALDERVRSRLAGGLVVEIGGLDEGLRASILSARLD 339

Query: 187 ADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           A RQ      +   ++AY+ + +  +    E  V+++   A   G  +T   A   +++ 
Sbjct: 340 AVRQSHPNFEVSPAVSAYVARAITANGRDLEGAVNRLLAHATLTGAPVTVETAETAIRDL 399


>gi|240136784|ref|YP_002961251.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Methylobacterium
           extorquens AM1]
 gi|240006748|gb|ACS37974.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Methylobacterium
           extorquens AM1]
          Length = 501

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 30/240 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWP-----SWPSRVVILVGPSGSGKSCLANIWSDK 87
           P    +S  + +V  +   A    +              + +    G GK+ L +     
Sbjct: 160 PLDARLSFANFVVGRSNALAHAAAERIARSDSDGALYNPLYVHAGVGLGKTHLLHAAGHA 219

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127
           +R      I  + D  +                  +     ++L+D+  +      T+  
Sbjct: 220 AREAGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDLLILDDVQFIQGKSIQTEFG 279

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF- 186
           H +N++      +++ +   P         + SRL    VV+I   D+     ++     
Sbjct: 280 HTLNALIDSGRQVVVASDRPPTELEALDERVRSRLAGGLVVEIGGLDEGLRASILSARLD 339

Query: 187 ADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           A RQ      +   ++AY+ + +  +    E  V+++   A   G  +T   A   +++ 
Sbjct: 340 AVRQSHPNFEVSPAVSAYVARAITANGRDLEGAVNRLLAHATLTGAPVTVETAETAIRDL 399


>gi|254424343|ref|ZP_05038061.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           PCC 7335]
 gi|196191832|gb|EDX86796.1| chromosomal replication initiator protein DnaA [Synechococcus sp.
           PCC 7335]
          Length = 460

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 32/228 (14%)

Query: 5   KEDYSFFVPDKQKNDQPK--NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW 62
            E  +  +P    + + K  +K  Q   +       SR   +V +    A     +    
Sbjct: 94  SEAANDSLPAASADTRGKASSKTNQSSSALNPKAIFSR--FVVGANNRMAHAAALAVAES 151

Query: 63  PSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTRK---- 109
           P R    + L G  G GK+ L          S++     + +     + ++   R+    
Sbjct: 152 PGREFNPLFLCGGVGLGKTHLMQAIGHYRIESNQQAKVAYVSTETFTNDLIASIRRDTMQ 211

Query: 110 ----------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                      +L++DI  ++  +    + FH  N++H+    +++ +   P      L 
Sbjct: 212 RFREQYREVDVILVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQIP-RLQ 270

Query: 157 D-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           D LCSR     +  I  PD +    ++ K     Q+ I + +  YI  
Sbjct: 271 DRLCSRFSMGLIADIQSPDFETRMAILQKKAEYEQVSIARDVTEYIAS 318


>gi|309811383|ref|ZP_07705170.1| chromosomal replication initiator protein DnaA [Dermacoccus sp.
           Ellin185]
 gi|308434690|gb|EFP58535.1| chromosomal replication initiator protein DnaA [Dermacoccus sp.
           Ellin185]
          Length = 501

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 78/243 (32%), Gaps = 35/243 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D  ++  +   A     +    P +    + + G SG GK+ L +         
Sbjct: 163 NPKYTFDTFVIGESNRFAHAAAIAIAEEPGQAYNPLFIHGDSGLGKTHLLHAIGHYVHDY 222

Query: 87  -----------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
                                    R+  F    +    +L+      L       +   
Sbjct: 223 HPKLRVRYVSSEEFTNDFVNSIRDDRAATFQRRYRDDVDVLLIDDIQFL----QGKEQTQ 278

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++H     +++T+   P         + SR K+     +  P+ +    ++ 
Sbjct: 279 EEFFHTFNALHSTGKQIVLTSDQPPEKLTTFADRMRSRFKSGLTTDVHPPELETRIAILR 338

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           K     ++ I   +   I  ++  ++   E  + ++   A  +   + R+ AA VLK+  
Sbjct: 339 KKANAERMDIGDDVLELIASKISTNIRELEGALIRVAAYASLQKEPVDRAKAAFVLKDVV 398

Query: 244 QCD 246
             +
Sbjct: 399 PSE 401


>gi|163849458|ref|YP_001637501.1| chromosomal replication initiation protein [Methylobacterium
           extorquens PA1]
 gi|218528084|ref|YP_002418900.1| chromosomal replication initiation protein [Methylobacterium
           chloromethanicum CM4]
 gi|163661063|gb|ABY28430.1| chromosomal replication initiator protein DnaA [Methylobacterium
           extorquens PA1]
 gi|218520387|gb|ACK80972.1| chromosomal replication initiator protein DnaA [Methylobacterium
           chloromethanicum CM4]
          Length = 501

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 30/240 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWP-----SWPSRVVILVGPSGSGKSCLANIWSDK 87
           P    +S  + +V  +   A    +              + +    G GK+ L +     
Sbjct: 160 PLDARLSFANFVVGRSNALAHAAAERIARSDSDGALYNPLYVHAGVGLGKTHLLHAAGHA 219

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127
           +R      I  + D  +                  +     ++L+D+  +      T+  
Sbjct: 220 AREAGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDLLILDDVQFIQGKSIQTEFG 279

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF- 186
           H +N++      +++ +   P         + SRL    VV+I   D+     ++     
Sbjct: 280 HTLNALIDSGRQVVVASDRPPTELEALDERVRSRLAGGLVVEIGGLDEGLRASILSARLD 339

Query: 187 ADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           A RQ      +   ++AY+ + +  +    E  V+++   A   G  +T   A   +++ 
Sbjct: 340 AVRQSHPNFEVSPAVSAYVARAITANGRDLEGAVNRLLAHATLTGAPVTVETAETAIRDL 399


>gi|256848506|ref|ZP_05553948.1| chromosomal replication initiator protein DnaA [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256714773|gb|EEU29752.1| chromosomal replication initiator protein DnaA [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 439

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 82/235 (34%), Gaps = 27/235 (11%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWS---- 85
           P     + D+ +     + A     +    P      +++ G  G GK+ L    +    
Sbjct: 102 PLNPEYTFDNFVEGRTNQFAYASAFAASEQPGGLYNPLLIYGDVGLGKTHLMQAIANNML 161

Query: 86  -------------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDID---LLDFNDTQL 126
                        +   +   ++I            +    +L++D+      +    + 
Sbjct: 162 VHNPDAKIKYVTSENFMNDYINSIKTGTQEQFRQEYRDLDALLVDDVQFFSEKNGTQLEF 221

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  NS+H  +  +++TA   P         L SR      V+I+ PD +    ++ +  
Sbjct: 222 FNTFNSLHDNNKQIVLTADQNPKEIPNLTDRLVSRFVWGLTVEITAPDLETRIAILNRKA 281

Query: 187 ADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +  +  I  ++  +I  ++  ++   E  + ++   A      I  ++A E L+
Sbjct: 282 EEENLQGIPNEVFNFIASKINTNVRELEGALMRVRVFADLHKTSINEAVAREALQ 336


>gi|309774990|ref|ZP_07670006.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917244|gb|EFP62968.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 452

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 88/232 (37%), Gaps = 28/232 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SDKSR 89
            + D  +V     +A     S   +P +    + + G SG GK+ L +       +++  
Sbjct: 116 YTFDSFVVGKNNREAHAAALSVCYYPGKFNNPLFIFGNSGLGKTHLLHAIGNYVKANRPE 175

Query: 90  STRFSNIAKSLDSILIDTRKPVLLEDI-------DLLDFNDTQ----------LFHIINS 132
                  ++   ++LI+  K   +ED+       D L  +D Q           F++ N 
Sbjct: 176 EKVLYIYSEDFVTLLIEAMKNKTVEDVKEMICSVDYLLIDDIQRLKQSTSQEIFFNMYNK 235

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ-- 190
           +   +  +++T+   P         L SR  +   V +  P+ +  + ++ K    R   
Sbjct: 236 LISDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETAKAILQKKMEGRSDE 295

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKE 241
           I ID ++  ++  R    +   E  ++++     L     I  + A E+ KE
Sbjct: 296 IMIDDEVLDFLATRFASDVRKLEGTLNELFFKAILYNPERIDITFAKEIFKE 347


>gi|325846368|ref|ZP_08169337.1| chromosomal replication initiator protein DnaA [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481552|gb|EGC84592.1| chromosomal replication initiator protein DnaA [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 458

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 34/209 (16%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSW--------PSRVVILVGPSGSGKSCLANIWS------ 85
            ++ +   + + A+    S                + + G SG GK+ L    +      
Sbjct: 124 FENFVQGKSNQLALAASQSVAENMANYKVSRVYNPLFIYGSSGLGKTHLMQAIAHEILKK 183

Query: 86  -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLD---FNDTQLFH 128
                      +K  +   S +  + +       + V   L++DI  +        + FH
Sbjct: 184 RDDCYVMYLSSEKFTNEMISAVRNNTNEEFRKKYRSVDMLLIDDIQFIANKTGTQEEFFH 243

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
               ++     +++++   P         L SR     +V IS PD +    ++ K   +
Sbjct: 244 TFEDLYNQGKQIVISSDRPPKEIKHLEERLVSRFGWGIIVDISKPDFETRVAILQKKQDE 303

Query: 189 RQIFIDKKLAAYIVQRME---RSLVFAEK 214
               +D K+  YI + +E   R L  A  
Sbjct: 304 LGAVVDYKILEYIAENIETNIRDLEGALA 332


>gi|212697388|ref|ZP_03305516.1| hypothetical protein ANHYDRO_01958 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675580|gb|EEB35187.1| hypothetical protein ANHYDRO_01958 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 459

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 34/209 (16%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSW--------PSRVVILVGPSGSGKSCLANIWS------ 85
            ++ +   + + A+    S                + + G SG GK+ L    +      
Sbjct: 125 FENFVQGKSNQLALAASQSVAENMANYKVSRVYNPLFIYGSSGLGKTHLMQAIAHEILKK 184

Query: 86  -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLD---FNDTQLFH 128
                      +K  +   S +  + +       + V   L++DI  +        + FH
Sbjct: 185 RDDCYVMYLSSEKFTNEMISAVRNNTNEEFRKKYRSVDMLLIDDIQFIANKTGTQEEFFH 244

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
               ++     +++++   P         L SR     +V IS PD +    ++ K   +
Sbjct: 245 TFEDLYNQGKQIVISSDRPPKEIKHLEERLVSRFGWGIIVDISKPDFETRVAILQKKQDE 304

Query: 189 RQIFIDKKLAAYIVQRME---RSLVFAEK 214
               +D K+  YI + +E   R L  A  
Sbjct: 305 LGAVVDYKILEYIAENIETNIRDLEGALA 333


>gi|284799976|ref|ZP_05985356.2| DNA replication initiator protein [Neisseria subflava NJ9703]
 gi|284796247|gb|EFC51594.1| DNA replication initiator protein [Neisseria subflava NJ9703]
          Length = 506

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 80/253 (31%), Gaps = 31/253 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGP 72
            ++D  + + EQ           + + L+       A     +    P        L G 
Sbjct: 156 AQHDAEEARYEQTNL----SRDYTFETLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYGS 211

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVL 112
           +G GK+ L     ++    R     + + S                            ++
Sbjct: 212 TGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLI 271

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  +   D    + F++ N  H     L++T    P         L SR      ++
Sbjct: 272 IDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLE 331

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           +  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +      
Sbjct: 332 LEPPELEMRVAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRP 391

Query: 230 -ITRSLAAEVLKE 241
            I   LA   L++
Sbjct: 392 VIDMDLARTALQD 404


>gi|93004834|ref|YP_579271.1| chromosomal replication initiator protein DnaA [Psychrobacter
           cryohalolentis K5]
 gi|92392512|gb|ABE73787.1| chromosomal replication initiator protein DnaA [Psychrobacter
           cryohalolentis K5]
          Length = 481

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 77/232 (33%), Gaps = 25/232 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI----DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88
               + +  +   +   A +                + + GPSG GK+ L +  + +   
Sbjct: 147 NPDFTFETFVTGKSNNLAYKACYELGKRQSKNRHNPLFIYGPSGLGKTHLMHSVAHRYLK 206

Query: 89  --------------RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHI 129
                             +S     ++     I     ++++DI +L     +  +   +
Sbjct: 207 NNQNFYYFTSEKFINQLVYSLRNNKIEDFKKKIKKVDLLIVDDIHVLAGKTKSSNEFLTL 266

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
                  D  L++ +   P           SR      V +  P+ D   +++ +  A  
Sbjct: 267 FADFTSGDKQLILASDRHPSQMTEFDERFRSRFSWGLTVAVDPPEIDTRVQILQRKAASY 326

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
            + + K+ A +I Q +  ++   E  ++++   A   G  IT  +    LK+
Sbjct: 327 GMSLPKECALFIAQNVVSNVRRLEGALNQVFANANLTGAPITLEMVQYALKD 378


>gi|225077253|ref|ZP_03720452.1| hypothetical protein NEIFLAOT_02308 [Neisseria flavescens
           NRL30031/H210]
 gi|224951397|gb|EEG32606.1| hypothetical protein NEIFLAOT_02308 [Neisseria flavescens
           NRL30031/H210]
          Length = 504

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 80/253 (31%), Gaps = 31/253 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGP 72
            ++D  + + EQ           + + L+       A     +    P        L G 
Sbjct: 154 AQHDAEEARYEQTNL----SRDYTFETLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYGS 209

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVL 112
           +G GK+ L     ++    R     + + S                            ++
Sbjct: 210 TGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLI 269

Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++DI  +   D    + F++ N  H     L++T    P         L SR      ++
Sbjct: 270 IDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLE 329

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           +  P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +      
Sbjct: 330 LEPPELEMRVAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRP 389

Query: 230 -ITRSLAAEVLKE 241
            I   LA   L++
Sbjct: 390 VIDMDLARTALQD 402


>gi|319639360|ref|ZP_07994111.1| chromosomal replication initiator protein dnaA [Neisseria mucosa
           C102]
 gi|317399544|gb|EFV80214.1| chromosomal replication initiator protein dnaA [Neisseria mucosa
           C102]
          Length = 506

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 80/252 (31%), Gaps = 31/252 (12%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPS 73
           ++D  + + EQ           + + L+       A     +    P        L G +
Sbjct: 157 QHDAEEARYEQTNL----SRDYTFETLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYGST 212

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVLL 113
           G GK+ L     ++    R     + + S                            +++
Sbjct: 213 GLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLII 272

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  +   D    + F++ N  H     L++T    P         L SR      +++
Sbjct: 273 DDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLEL 332

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
             P+ +    ++ K      I I+ + A +I   +  ++   E   +++   +       
Sbjct: 333 EPPELEMRVAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPV 392

Query: 230 ITRSLAAEVLKE 241
           I   LA   L++
Sbjct: 393 IDMDLARTALQD 404


>gi|170738368|ref|YP_001767023.1| chromosomal replication initiation protein [Methylobacterium sp.
           4-46]
 gi|168192642|gb|ACA14589.1| chromosomal replication initiator protein DnaA [Methylobacterium
           sp. 4-46]
          Length = 494

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 75/240 (31%), Gaps = 30/240 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWP----SWP-SRVVILVGPSGSGKSCLANIWSDK 87
           P    ++    +V  +   A    +       S P    +      G GK+ L +     
Sbjct: 153 PLDARLTFQTFVVGRSNALAHAAAERVAGHEGSGPIYNPLYFHAGVGLGKTHLLHAIGHA 212

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127
           ++      I  + D  +                  +     ++L+D+  +       +  
Sbjct: 213 AKEAGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDVLILDDVQFIQGRSIQAEFG 272

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF- 186
           H +N++      ++  A   P         + SRL    VV+I   D+     ++     
Sbjct: 273 HTLNALIDAGRQVVAAADRPPTELESLDERVRSRLAGGLVVEIGTLDEALRATILQSRLE 332

Query: 187 ----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               +     +   +A Y+ + +  +    E  V+++   A   G  +T   A   +++ 
Sbjct: 333 AVRVSHPGFEVSPAVAEYVAKAITANGRDLEGAVNRLLAHATLTGAPVTLETAETAIRDL 392


>gi|94263748|ref|ZP_01287555.1| chromosomal replication initiator protein, DnaA [delta
           proteobacterium MLMS-1]
 gi|93455848|gb|EAT06011.1| chromosomal replication initiator protein, DnaA [delta
           proteobacterium MLMS-1]
          Length = 447

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 89/264 (33%), Gaps = 44/264 (16%)

Query: 23  NKEEQLFFS-FPRC--------LGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILV 70
              EQL     PR            + D+ +V  +   A    ++  +        V + 
Sbjct: 88  KGAEQLRLPRMPRNHNRIRTLHPRYTFDEFMVGDSNALAYSACEAIATGTTQAEPCVFIN 147

Query: 71  GPSGSGKSCLANIWS-----------------DKSRSTRFSNI----AKSLDSILIDTRK 109
             +G GKS L +  +                  +  +    +I     +           
Sbjct: 148 AGTGLGKSHLTHAVAHHLYNNAPGTRLCCLTSQQLTAELVHHIRNNSMEQFKEKFQRRCD 207

Query: 110 PVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL----CSRL 162
            +L+ED+  L        +L   ++S+      +L T    P      +PDL     SRL
Sbjct: 208 VLLVEDVQTLSGRSKTQVELAEAVDSLLDSGRRVLFTGSRSPRE----IPDLDEGVRSRL 263

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            +  V  I+ PD      +I +     ++ +D+++ AYI +++   +   E  +  +   
Sbjct: 264 ASGLVTTINPPDIKTRRLIIRRKAVFHKLALDEEMVAYIAEKVRGDIRKVESAMVGLKAK 323

Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246
           A  R +  T  +  EV+      +
Sbjct: 324 ANLRRVAPTMEMVREVVATVAGEE 347


>gi|255066616|ref|ZP_05318471.1| DNA replication initiator protein [Neisseria sicca ATCC 29256]
 gi|255049200|gb|EET44664.1| DNA replication initiator protein [Neisseria sicca ATCC 29256]
          Length = 516

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 80/254 (31%), Gaps = 31/254 (12%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71
           + + D  + + EQ           + D L+       A     +    P        L G
Sbjct: 165 EAQRDAEEARYEQTNL----SRDYTFDTLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYG 220

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPV 111
            +G GK+ L     ++    R     + + S                            +
Sbjct: 221 STGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLL 280

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           +++DI  +   D    + F++ N  H     L++T    P         L SR      +
Sbjct: 281 IIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTL 340

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           ++  P+ +    ++ K      I I+ + A ++   +  ++   E   +++   +     
Sbjct: 341 ELEPPELEMRVAILQKKAEAAGISIEDEAALFVANLIRSNVRELEGAFNRVSASSRFMNR 400

Query: 229 G-ITRSLAAEVLKE 241
             I   LA   L++
Sbjct: 401 PVIDMDLARTALQD 414


>gi|112491279|pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
 gi|112491280|pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
 gi|112491281|pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
 gi|112491282|pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
          Length = 323

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 74/194 (38%), Gaps = 25/194 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + ++ +V      A  ++         +   + + G  G+GK+ L     ++++  
Sbjct: 4   NPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 63

Query: 92  RFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFNDT---QLFHII 130
            +  I  S D                       +   +LL+D+  L   +    + FHI 
Sbjct: 64  GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIF 123

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N+++  +  +++ +   P         L SR +   +V+I L D+    K+I +   +  
Sbjct: 124 NTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN 182

Query: 191 IFIDKKLAAYIVQR 204
           + + K++  Y+++ 
Sbjct: 183 LELRKEVIDYLLEN 196


>gi|24158831|pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
          Length = 324

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 74/194 (38%), Gaps = 25/194 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + ++ +V      A  ++         +   + + G  G+GK+ L     ++++  
Sbjct: 5   NPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64

Query: 92  RFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFNDT---QLFHII 130
            +  I  S D                       +   +LL+D+  L   +    + FHI 
Sbjct: 65  GYRVIYSSADDFAQAXVEHLKKGTINEFRNXYKSVDLLLLDDVQFLSGKERTQIEFFHIF 124

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N+++  +  +++ +   P         L SR +   +V+I L D+    K+I +   +  
Sbjct: 125 NTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN 183

Query: 191 IFIDKKLAAYIVQR 204
           + + K++  Y+++ 
Sbjct: 184 LELRKEVIDYLLEN 197


>gi|15605842|ref|NP_213219.1| chromosome replication initiator protein DnaA [Aquifex aeolicus
           VF5]
 gi|14194659|sp|O66659|DNAA_AQUAE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|2983000|gb|AAC06612.1| chromosome replication initiator protein DnaA [Aquifex aeolicus
           VF5]
          Length = 399

 Score = 89.8 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 74/194 (38%), Gaps = 25/194 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
               + ++ +V      A  ++         +   + + G  G+GK+ L     ++++  
Sbjct: 80  NPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 139

Query: 92  RFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFNDT---QLFHII 130
            +  I  S D                       +   +LL+D+  L   +    + FHI 
Sbjct: 140 GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIF 199

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N+++  +  +++ +   P         L SR +   +V+I L D+    K+I +   +  
Sbjct: 200 NTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN 258

Query: 191 IFIDKKLAAYIVQR 204
           + + K++  Y+++ 
Sbjct: 259 LELRKEVIDYLLEN 272


>gi|91785914|ref|YP_546866.1| chromosomal replication initiation protein [Polaromonas sp. JS666]
 gi|91695139|gb|ABE41968.1| chromosomal replication initiator protein DnaA [Polaromonas sp.
           JS666]
          Length = 464

 Score = 89.4 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 87/234 (37%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
              ++ D L+  +A      A   + S        + + G  G GK+ L +   +K  + 
Sbjct: 130 NSALTFDTLIEGTANRMGRAAALHVSSSLGQLYNPLFIYGGVGLGKTHLMHAIGNKLLAD 189

Query: 91  -----TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFH 128
                  + +  + +  ++                +   +L++D+      D    + F+
Sbjct: 190 NPAAKVLYIHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFFANKDRTQEEFFN 249

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              ++    S ++MT+ T+P         L SR  +   V I  P+ +    ++++    
Sbjct: 250 AFEALLTKKSHIVMTSDTYPKGLTDIHERLVSRFDSGLTVAIEPPELEMRVAILIRKAEA 309

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + +++A ++ + +  ++   E  + K+   +      I+  LA E L++ 
Sbjct: 310 EGTVMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNLKEISIQLAREALRDL 363


>gi|326692341|ref|ZP_08229346.1| chromosomal replication initiation protein [Leuconostoc argentinum
           KCTC 3773]
          Length = 448

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 88/262 (33%), Gaps = 41/262 (15%)

Query: 18  NDQPKNKEEQ---LFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---IL 69
              PK+   Q   L F          + D  +V +  E A  +  +    P RV    ++
Sbjct: 88  ESLPKSTPIQTENLTFTRESDLNENFTFDKFVVGAGNENAYAIARAVAEDPGRVYNPYLI 147

Query: 70  VGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK------- 109
            G  G GK+ L     +    T               ++  +SL +    T         
Sbjct: 148 YGGVGLGKTHLMQAIGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGATAAFKKEYRT 207

Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK- 163
              +L++DI      +    + F+  N + +    ++MT+   P        DL SRL  
Sbjct: 208 VDLLLIDDIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLTS 263

Query: 164 ---AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
              A   + I  PD      ++  +     + I   +   I  +++ ++   E    + +
Sbjct: 264 RFEAGISMDIQKPDLPTRVAILKNLAETDNLTIPNDVLELIADKIDSNIRTLEGTFHRFE 323

Query: 221 NLALSRGMGITRSLAAEVLKET 242
            +   R    T+  A ++L + 
Sbjct: 324 AMLRFRNKPATKETAQQILGDL 345


>gi|254456286|ref|ZP_05069715.1| chromosomal replication initiator protein DnaA [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083288|gb|EDZ60714.1| chromosomal replication initiator protein DnaA [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 469

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 31/210 (14%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLAN--------------I 83
            D+ ++ ++ + A           S    + + G  G GK+ L N              I
Sbjct: 131 FDNFIIGTSNKLAYEASLKVSENTSHYNPLYIYGGVGMGKTHLLNSIGLELKDNNKVMFI 190

Query: 84  WSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFHIINSIHQYD 137
            +++       +I  +      +       +L++DI  +   +    + FH  N++    
Sbjct: 191 SAERFMYQFVKSIKANDMVKFKEYFRNTDILLIDDIQFISGKEAMQEEFFHTFNALLDKG 250

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM------FADRQI 191
           S ++++A   P         + SR     VV I  PD +  +K++ K           Q+
Sbjct: 251 SQIIVSADRAPNKLSRIQDRIKSRFSGGLVVDIQKPDLELRKKIVEKKTEELNSLYADQL 310

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            + K +  +I + +        +LV  ++ 
Sbjct: 311 QVSKDIQDFISREIT---ASIRELVGAINR 337


>gi|323137249|ref|ZP_08072328.1| chromosomal replication initiator protein DnaA [Methylocystis sp.
           ATCC 49242]
 gi|322397607|gb|EFY00130.1| chromosomal replication initiator protein DnaA [Methylocystis sp.
           ATCC 49242]
          Length = 500

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 76/244 (31%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDS-----WPSWP-SRVVILVGPSGSGKSCLANIWSD 86
           P    +S    LV  + + A               P    +      G GK+ L    + 
Sbjct: 156 PLDRRLSFSTFLVGPSNQLAYAAACRVAEARPGDAPIFNPLYAHAAVGLGKTHLLQALAH 215

Query: 87  KSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQL 126
            S   R   I  + +  +                  +     ++++D+  L       + 
Sbjct: 216 ASNDNRRRAIYLTAERFMSGFVSSLNAQTSIAFKERLRAIDMLIIDDVQFLQGKSIQQEF 275

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            H +N++      +++ A   P         + SR K    V I   D+    K++    
Sbjct: 276 CHTLNALIDAGRQVVVAADRPPSELETLDERVLSRFKGGLCVDIGPLDESLRMKMLNARI 335

Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           A  Q       +  ++ AY+ + +  +    E  V+++       G  +T   A   +++
Sbjct: 336 AAAQESQPGFHVPPEVVAYVARTIVTNGRDLEGAVNRLLAHVTLNGAPLTIETAETAIRD 395

Query: 242 TQQC 245
             + 
Sbjct: 396 LVRS 399


>gi|261363925|ref|ZP_05976808.1| DNA replication initiator protein [Neisseria mucosa ATCC 25996]
 gi|288567937|gb|EFC89497.1| DNA replication initiator protein [Neisseria mucosa ATCC 25996]
          Length = 516

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 80/254 (31%), Gaps = 31/254 (12%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71
           + + D  + + EQ           + D L+       A     +    P        L G
Sbjct: 165 EAQRDAEEARYEQTNL----SRDYTFDTLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYG 220

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPV 111
            +G GK+ L     ++    R     + + S                            +
Sbjct: 221 STGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLL 280

Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           +++DI  +   D    + F++ N  H     L++T    P         L SR      +
Sbjct: 281 IIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTL 340

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           ++  P+ +    ++ K      I I+ + A ++   +  ++   E   +++   +     
Sbjct: 341 ELEPPELEMRVAILQKKAEAAGISIEDEAALFVANLIRSNVRELEGAFNRVSASSRFMNR 400

Query: 229 G-ITRSLAAEVLKE 241
             I   LA   L++
Sbjct: 401 PVIDMDLARTALQD 414


>gi|297567993|ref|YP_003689337.1| chromosomal replication initiator protein DnaA [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296923908|gb|ADH84718.1| chromosomal replication initiator protein DnaA [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 451

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 85/242 (35%), Gaps = 35/242 (14%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------- 85
              + D+ +V  +   A    ++  +  +     V +   +G GKS LA+  +       
Sbjct: 115 PRYTFDEFMVGESNALAFTACEAIAAGGAEAEPCVFINAGTGLGKSHLAHAVAHHLYNHS 174

Query: 86  ----------DKSRSTRF----SNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFH 128
                      +  +       SN               +L+ED+  L        +L  
Sbjct: 175 PSTRLCCLTTQQLTAELVRHIRSNTMDQFKEKFQRQCDVLLVEDVQTLSGRGKTQVELAE 234

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDL----CSRLKAATVVKISLPDDDFLEKVIVK 184
            ++ + +    +L T    P      +PDL     SRL +  V  I+ PD      +I +
Sbjct: 235 AVDCLLENGRRVLFTGAVGPRE----IPDLDDGVRSRLASGLVTSINPPDMQTRRLIIQR 290

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             A  ++ +D+++  ++ +++   +   E  +  +   A  R    T ++  EV+     
Sbjct: 291 KAAYHKLALDEEMVEFLAEKVRGDVRRLESAIVGLKAKANLRKSQPTMAMVKEVVATVVG 350

Query: 245 CD 246
            D
Sbjct: 351 GD 352


>gi|256545950|ref|ZP_05473305.1| ATPase involved in DNA replication initiation [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398372|gb|EEU11994.1| ATPase involved in DNA replication initiation [Anaerococcus
           vaginalis ATCC 51170]
          Length = 464

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 34/207 (16%)

Query: 42  DLLVHSAIEQAVRLIDSWPSW--------PSRVVILVGPSGSGKSCLANIWS-------- 85
           + +   + + A+    S                + + G SG GK+ L    +        
Sbjct: 132 NFVQGKSNQLALAASQSVAENMANYKVSRVYNPLFIYGASGLGKTHLMQAIAHEILEKRD 191

Query: 86  ---------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLD---FNDTQLFHII 130
                    +K  +   S +  + +       + V   L++DI  +        + FH  
Sbjct: 192 DCYVMYLSSEKFTNEMISAVRNNTNEEFRKKYRSVDMLLIDDIQFIANKTGTQEEFFHTF 251

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
             ++     +++++   P         L SR     +V IS PD +    ++ K   +  
Sbjct: 252 EDLYNQGKQIVISSDRPPKEIKHLEDRLVSRFGWGIIVDISKPDFETRVAILQKKQDELG 311

Query: 191 IFIDKKLAAYIVQRME---RSLVFAEK 214
             +D K+  YI + +E   R L  A  
Sbjct: 312 AVVDYKILEYIAENIETNIRDLEGALA 338


>gi|24753761|gb|AAN64009.1|AF434658_6 chromosomal replication initiation protein A [Leptospira
           interrogans]
          Length = 443

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 67/217 (30%), Gaps = 30/217 (13%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI---- 83
            F      + +  +V      A          P+  +  + + G  G GK+ L +     
Sbjct: 103 DFQFNPDYTFETFIVGDCNRLAYTAAKECVRKPAEINP-LYIFGSVGVGKTHLLHAIGSE 161

Query: 84  -----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---- 122
                            + ++ R    S        I   +   ++++DI LL  N    
Sbjct: 162 LTKKDPWKTVCYVDISSFMNEFRFALQSRELIESFKIKYQSYNCLIVDDIQLLSTNAEKT 221

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + F + N + +    +++ +        +    L SR        I  PD +  + ++
Sbjct: 222 QDEFFALFNFLFERKRQIVIASDRPSSELAIH-ERLKSRFVTGVQADIQYPDREIRKGIV 280

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
                   + + + +  ++  ++E         ++ +
Sbjct: 281 THHSKIMDLGLSEDILDFLADQIEEDTRLLLGALNDI 317


>gi|24212701|ref|NP_710182.1| chromosomal replication initiation protein A [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45655915|ref|YP_000001.1| chromosomal replication initiator protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|61212641|sp|Q72WD6|DNAA_LEPIC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61212842|sp|Q8FA34|DNAA_LEPIN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|24193332|gb|AAN47200.1| chromosomal replication initiation protein A [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45599148|gb|AAS68638.1| chromosomal replication initiator protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 443

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 67/217 (30%), Gaps = 30/217 (13%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI---- 83
            F      + +  +V      A          P+  +  + + G  G GK+ L +     
Sbjct: 103 DFQFNPDYTFETFIVGDCNRLAYTAAKECVRKPAEINP-LYIFGSVGVGKTHLLHAIGSE 161

Query: 84  -----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---- 122
                            + ++ R    S        I   +   ++++DI LL  N    
Sbjct: 162 LTKKDPWKTVCYVDISSFMNEFRFALQSRELIESFKIKYQSYNCLIVDDIQLLSTNAEKT 221

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + F + N + +    +++ +        +    L SR        I  PD +  + ++
Sbjct: 222 QDEFFALFNFLFERKRQIVIASDRPSSELAIH-ERLKSRFVTGVQADIQYPDREIRKGIV 280

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
                   + + + +  ++  ++E         ++ +
Sbjct: 281 THHSKIMDLGLSEDILDFLADQIEEDTRLLLGALNDI 317


>gi|296283101|ref|ZP_06861099.1| chromosomal replication initiation protein [Citromicrobium
           bathyomarinum JL354]
          Length = 484

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 75/234 (32%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--- 88
              ++    +   A   A        +        + +   +G GK+ L +    +    
Sbjct: 149 DASLTFAAFVTGDANVLARNAAQRMAANEKPQFSPLYIKAATGQGKTHLLHAIGHQFLSQ 208

Query: 89  --RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLL---DFNDTQLFH 128
             R+  F   A+      +   K                +L++D+  +        +L +
Sbjct: 209 HPRARIFYCSAERFMVEFVQALKQNRMIEFKTRLRGFDLLLVDDLQFIIGKASAQEELLY 268

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            I+ +      L+  A   P +     P L SRL    V  I   D +    ++      
Sbjct: 269 TIDHLLSEGKRLVFAADRAPQALDSVEPRLLSRLSMGLVADIQPADLELRRSILESKLTR 328

Query: 189 -RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              + +   +  ++ + + R++      ++K+   A   G  ++  LA E L +
Sbjct: 329 FAPLSVPDDVVDFLARTITRNVRELVGGLNKLIAYAQLTGQPVSLQLAEEQLTD 382


>gi|282848766|ref|ZP_06258161.1| chromosomal replication initiator protein DnaA [Veillonella parvula
           ATCC 17745]
 gi|282581552|gb|EFB86940.1| chromosomal replication initiator protein DnaA [Veillonella parvula
           ATCC 17745]
          Length = 524

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 82/239 (34%), Gaps = 34/239 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVI 68
           K     P  + + +               D+ +  +A      A + +  +P      + 
Sbjct: 158 KPSETTPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDYNPLF 217

Query: 69  LVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           + GPSG GK+ L +    + K        ++ + ++ +                      
Sbjct: 218 IYGPSGLGKTHLMHAIGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNI 277

Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             ++++DI  L+  +   T+LF+  N +   +  +++T+ T P         L SR +A 
Sbjct: 278 DVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAG 337

Query: 166 TVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            +  +  PD +    +   +        R I ID     Y+  +   ++   +    K+
Sbjct: 338 YIATMENPDLETRIAIFRSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTKL 396


>gi|330902925|gb|EGH33868.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 180

 Score = 89.1 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 65/177 (36%), Gaps = 27/177 (15%)

Query: 67  VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSIL 104
           + L G  G GK+ L +                        +D  ++ + + I +      
Sbjct: 5   LFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR--F 62

Query: 105 IDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
             +   +L++DI      +    + FH  N++ +    +++T+  +P         L SR
Sbjct: 63  YRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSR 122

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
                 V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + +
Sbjct: 123 FGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKR 179


>gi|269797070|ref|YP_003310970.1| chromosomal replication initiator protein DnaA [Veillonella parvula
           DSM 2008]
 gi|269093699|gb|ACZ23690.1| chromosomal replication initiator protein DnaA [Veillonella parvula
           DSM 2008]
          Length = 524

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 86/250 (34%), Gaps = 42/250 (16%)

Query: 12  VPDKQKNDQPKNKEE-----Q---LFFSFPR---CLGISRDDLLVHSAIEQ---AVRLID 57
           +PD+     PK   E     Q   +               D+ +  +A      A + + 
Sbjct: 147 IPDEPMIATPKKPTETMSTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVA 206

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSIL----------- 104
            +P      + + GPSG GK+ L +    + K        ++ + ++ +           
Sbjct: 207 EFPGGDYNPLFIYGPSGLGKTHLMHAIGNAIKENHPHMKVMSITSENFMNIFVETLQRNQ 266

Query: 105 -------IDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                        ++++DI  L+  +   T+LF+  N +   +  +++T+ T P      
Sbjct: 267 GKLFRNTFRNIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQF 326

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSL 209
              L SR +A  +  +  PD +    +   +        R I ID     Y+  +   ++
Sbjct: 327 EDRLRSRFQAGYIATMENPDLETRIAIFRSLLEREYKKNRIIRIDNDSINYVALQFSENV 386

Query: 210 VFAEKLVDKM 219
              +    K+
Sbjct: 387 RVLQGAFTKL 396


>gi|332531209|ref|ZP_08407122.1| chromosomal replication initiation protein [Hylemonella gracilis
           ATCC 19624]
 gi|332039316|gb|EGI75729.1| chromosomal replication initiation protein [Hylemonella gracilis
           ATCC 19624]
          Length = 477

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 76/199 (38%), Gaps = 23/199 (11%)

Query: 67  VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR------------- 108
           + + G +G GK+ L +       ++K  +      A+   + ++                
Sbjct: 178 LFIYGSTGLGKTHLIHAVGNRLLAEKPGAKVLYTHAEWFVTDVVKAYQRKTFDEFKDKYH 237

Query: 109 --KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++D+      D    + F+   ++    S ++MT+ T+P         L SR  
Sbjct: 238 SLDLLLIDDVQFFAGKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLLDINQRLVSRFD 297

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   V I  P+ +    +++         + +++A ++ + +  ++   E  + K+   +
Sbjct: 298 SGLTVAIEPPELEMRVAILINKAQSEGASMPEEVAFFVAKNVRSNVRELEGALRKILAYS 357

Query: 224 LSRGMGITRSLAAEVLKET 242
                 ++  LA E L++ 
Sbjct: 358 RFNQKEVSIQLAREALRDL 376


>gi|329847538|ref|ZP_08262566.1| chromosomal replication initiator protein DnaA [Asticcacaulis
           biprosthecum C19]
 gi|328842601|gb|EGF92170.1| chromosomal replication initiator protein DnaA [Asticcacaulis
           biprosthecum C19]
          Length = 433

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 84/236 (35%), Gaps = 32/236 (13%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI--WSDKS--- 88
            ++ D  +     E A  +   + SW       V   GP G GK+ L N   W  ++   
Sbjct: 93  RLTFDTFVPGRGNEFAYTMSRQVASWADGHFNPVFFHGPYGYGKTHLLNAIGWEAQAKRP 152

Query: 89  RSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDF---NDTQLFHII 130
            +      A+   S  +                    +L++D+  +     +  +LFH +
Sbjct: 153 DARIVYLTAEKFTSTFVKALMDKSTSAFKDEVRGADLLLVDDVHFIGGKTSSQEELFHTL 212

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK---MFA 187
            S+ + +  ++ TA   P         L S L +  V  + + D      ++ +     +
Sbjct: 213 TSLIENNRRVVFTADRPPTQLNEIEARLRSHLSSGLVCALDVADQSLRMGIVERKLGQLS 272

Query: 188 DR-QIF--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            R  +      ++  ++  R+  S+   E  V+ +   A +R   +T   A  +L+
Sbjct: 273 QRLGVAQCPRAEVMQFLADRVPGSIRELEGAVNTLVASAGARLGSLTLEEAMALLQ 328


>gi|297748405|gb|ADI50951.1| DnaA [Chlamydia trachomatis D-EC]
 gi|297749285|gb|ADI51963.1| DnaA [Chlamydia trachomatis D-LC]
          Length = 486

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 50/279 (17%)

Query: 4   MKEDYSFFVPDKQKND---QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLID 57
           +K       P   K       +NK+ QL  +         D+ +   + +    A   I 
Sbjct: 116 IKRSSPLVTPSIAKPATEVSEENKDFQLKLN----GAYRFDNFIEGPSNQFVKSAALGIA 171

Query: 58  SWPSWPSRVVILVGPSGSGKSCLAN--------------IWSDKSRSTRFSNIAKSLDSI 103
           + P      + + G  G GK+ L +              I    + +   +++   L   
Sbjct: 172 ARPGRSYNPLFIHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEAF-INDLVHHLRVK 230

Query: 104 LID-------TRKPVLLEDI----DLLDFNDT------QLFHIINSIHQYDSSLLMTART 146
            ID       +   +L++DI    +  +F +        L H+          +++T+  
Sbjct: 231 SIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLIHL-------SKQIVVTSDK 283

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P    +    + +R++   V  + +PD +    ++      + + I  ++A YI   + 
Sbjct: 284 PPGQLKLS-ERIIARMEWGLVAHVGVPDLETRVAILQHKAEQKGLNIPNEIAFYIADHVY 342

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            ++   E  ++K+    L     +T +   + LKE  + 
Sbjct: 343 GNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELFRA 381


>gi|237802698|ref|YP_002887892.1| chromosomal replication initiation protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231273932|emb|CAX10724.1| Chromosomal replication initiation protein [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 455

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 50/279 (17%)

Query: 4   MKEDYSFFVPDKQKND---QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLID 57
           +K       P   K       +NK+ QL  +         D+ +   + +    A   I 
Sbjct: 85  IKRSSPLVTPSIAKPATEVSEENKDFQLKLN----GAYRFDNFIEGPSNQFVKSAALGIA 140

Query: 58  SWPSWPSRVVILVGPSGSGKSCLAN--------------IWSDKSRSTRFSNIAKSLDSI 103
           + P      + + G  G GK+ L +              I    + +   +++   L   
Sbjct: 141 ARPGRSYNPLFIHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEAF-INDLVHHLRVK 199

Query: 104 LID-------TRKPVLLEDI----DLLDFNDT------QLFHIINSIHQYDSSLLMTART 146
            ID       +   +L++DI    +  +F +        L H+          +++T+  
Sbjct: 200 SIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLIHL-------SKQIVVTSDK 252

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P    +    + +R++   V  + +PD +    ++      + + I  ++A YI   + 
Sbjct: 253 PPGQLKLS-ERIIARMEWGLVAHVGVPDLETRVAILQHKAEQKGLNIPNEIAFYIADHVY 311

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            ++   E  ++K+    L     +T +   + LKE  + 
Sbjct: 312 GNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELFRA 350


>gi|15604996|ref|NP_219780.1| chromosomal replication initiation protein [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76788997|ref|YP_328083.1| chromosomal replication initiation protein [Chlamydia trachomatis
           A/HAR-13]
 gi|237804620|ref|YP_002888774.1| chromosomal replication initiation protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311076|ref|ZP_05353646.1| chromosomal replication initiation protein [Chlamydia trachomatis
           6276]
 gi|255317377|ref|ZP_05358623.1| chromosomal replication initiation protein [Chlamydia trachomatis
           6276s]
 gi|255348635|ref|ZP_05380642.1| chromosomal replication initiation protein [Chlamydia trachomatis
           70]
 gi|255503175|ref|ZP_05381565.1| chromosomal replication initiation protein [Chlamydia trachomatis
           70s]
 gi|255506853|ref|ZP_05382492.1| chromosomal replication initiation protein [Chlamydia trachomatis
           D(s)2923]
 gi|14194663|sp|O84277|DNAA2_CHLTR RecName: Full=Chromosomal replication initiator protein DnaA 2
 gi|3328688|gb|AAC67868.1| Replication Initiation Factor [Chlamydia trachomatis D/UW-3/CX]
 gi|76167527|gb|AAX50535.1| DnaA [Chlamydia trachomatis A/HAR-13]
 gi|231272920|emb|CAX09831.1| Chromosomal replication initiation protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|289525314|emb|CBJ14790.1| Chromosomal replication initiation protein [Chlamydia trachomatis
           Sweden2]
 gi|296434864|gb|ADH17042.1| chromosomal replication initiation protein [Chlamydia trachomatis
           E/150]
 gi|296435791|gb|ADH17965.1| chromosomal replication initiation protein [Chlamydia trachomatis
           G/9768]
 gi|296436716|gb|ADH18886.1| chromosomal replication initiation protein [Chlamydia trachomatis
           G/11222]
 gi|296437651|gb|ADH19812.1| chromosomal replication initiation protein [Chlamydia trachomatis
           G/11074]
 gi|296438584|gb|ADH20737.1| chromosomal replication initiation protein [Chlamydia trachomatis
           E/11023]
 gi|297140150|gb|ADH96908.1| chromosomal replication initiation protein [Chlamydia trachomatis
           G/9301]
          Length = 455

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 50/279 (17%)

Query: 4   MKEDYSFFVPDKQKND---QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLID 57
           +K       P   K       +NK+ QL  +         D+ +   + +    A   I 
Sbjct: 85  IKRSSPLVTPSIAKPATEVSEENKDFQLKLN----GAYRFDNFIEGPSNQFVKSAALGIA 140

Query: 58  SWPSWPSRVVILVGPSGSGKSCLAN--------------IWSDKSRSTRFSNIAKSLDSI 103
           + P      + + G  G GK+ L +              I    + +   +++   L   
Sbjct: 141 ARPGRSYNPLFIHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEAF-INDLVHHLRVK 199

Query: 104 LID-------TRKPVLLEDI----DLLDFNDT------QLFHIINSIHQYDSSLLMTART 146
            ID       +   +L++DI    +  +F +        L H+          +++T+  
Sbjct: 200 SIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLIHL-------SKQIVVTSDK 252

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P    +    + +R++   V  + +PD +    ++      + + I  ++A YI   + 
Sbjct: 253 PPGQLKLS-ERIIARMEWGLVAHVGVPDLETRVAILQHKAEQKGLNIPNEIAFYIADHVY 311

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            ++   E  ++K+    L     +T +   + LKE  + 
Sbjct: 312 GNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELFRA 350


>gi|307710359|ref|ZP_07646800.1| chromosomal replication initiator protein DnaA [Streptococcus mitis
           SK564]
 gi|307618951|gb|EFN98086.1| chromosomal replication initiator protein DnaA [Streptococcus mitis
           SK564]
          Length = 453

 Score = 89.1 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A +     IT  +AAE ++  
Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGSINDITLIARVKNIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|116514954|ref|YP_802583.1| DnaA [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285650|sp|Q058F9|DNAA_BUCCC RecName: Full=Chromosomal replication initiator protein DnaA
 gi|116256808|gb|ABJ90490.1| chromosomal replication initiator protein [Buchnera aphidicola str.
           Cc (Cinara cedri)]
          Length = 437

 Score = 89.1 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 93/236 (39%), Gaps = 28/236 (11%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           Q++            + +   + + A     +   +  ++ +  + L G +G GK+ L +
Sbjct: 96  QIYLHSEINKKYQFHNFIQGQSNQLAYYSSYKFTKNLKNFYNP-LFLYGNTGLGKTHLLH 154

Query: 83  IWSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLD-- 120
              +K                    N+  SL +  ID       +   +LL+DI      
Sbjct: 155 AIGNKFLIKNKKKKVIYIHSENFIQNMVNSLKNNSIDKFKNYYRSIDVLLLDDIQFFSNK 214

Query: 121 -FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
             +  +LF+  N++      +++TA  +P         L SR K    + I+ P+     
Sbjct: 215 KKSQEELFNTFNTLFNKQQKIVLTADCYPEYISGITEQLKSRFKWGLTISINPPELKTRI 274

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           K+++    + +I +  ++A YI +++  ++   E ++ K+  L++     IT +L 
Sbjct: 275 KILLHKAYENKILLSYEVAKYIAKKIFSNVRELEGILKKIQILSILNKEKITINLV 330


>gi|116326856|ref|YP_796576.1| chromosomal replication initiator protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116329803|ref|YP_799521.1| chromosomal replication initiator protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282421|sp|Q04WF7|DNAA_LEPBJ RecName: Full=Chromosomal replication initiator protein DnaA
 gi|122285293|sp|Q056V2|DNAA_LEPBL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|116119600|gb|ABJ77643.1| Chromosomal replication initiator protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116123492|gb|ABJ74763.1| Chromosomal replication initiator protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 437

 Score = 89.1 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 67/217 (30%), Gaps = 30/217 (13%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI---- 83
            F      + +  +V      A          P+  +  + L G  G GK+ L +     
Sbjct: 97  DFQFNPDYTFETFIVGDCNRLAYTAAKECVRKPAEINP-LYLFGSVGVGKTHLLHAIGSE 155

Query: 84  -----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---- 122
                            + ++ R    S        I   +   +L++DI LL  N    
Sbjct: 156 LIKKDPWKTVCYIDISSFMNEFRFALQSRELIESFKIKYQSYNCLLVDDIQLLSTNAEKT 215

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + F + N + +    +++ +        +    L SR        I  P+ +  + ++
Sbjct: 216 QDEFFALFNFLFERKRQIVIASDRPSSELTIH-ERLKSRFVTGVQADIQYPNKEIRKGIV 274

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
                   + + + +  ++  ++E         ++ +
Sbjct: 275 TSHSKIMDLGLSEDVLEFLADQIEEDTRLLLGALNDI 311


>gi|91205663|ref|YP_538018.1| chromosomal replication initiation protein [Rickettsia bellii
           RML369-C]
 gi|123084564|sp|Q1RI85|DNAA_RICBR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|91069207|gb|ABE04929.1| Chromosomal replication initiator protein DnaA [Rickettsia bellii
           RML369-C]
          Length = 463

 Score = 89.1 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 84/242 (34%), Gaps = 32/242 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANI--WSDK 87
            +  + D+ +V +  E A  +  +     S       + L G  G GK+ L +   W  K
Sbjct: 127 DIRFTFDNFVVGAPNELAYAVARAVAESSSAVSESNPLFLYGGVGLGKTHLMHAIGWYIK 186

Query: 88  SRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQL 126
             +     I  S +  +    K +                  +++DI  +   D    + 
Sbjct: 187 QNNPSRKVIYMSAEKFMYQFVKALRNKEVMSFKEKFRSVDVLMIDDIQFICGKDSTQEEF 246

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++    P         + SRL    V  +     +    ++    
Sbjct: 247 FHTFNTLIDNNRQMVISCDRSPSDLDDIEDRIKSRLGWGLVADVHSTTYELRLGILESKI 306

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SLAAEVLKET 242
               + + K +  ++  ++  ++   E  ++K+   +      IT     ++  ++L+  
Sbjct: 307 EQMNVKVPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTAKEITLENTQNILRDLLRSN 366

Query: 243 QQ 244
           ++
Sbjct: 367 ER 368


>gi|207108901|ref|ZP_03243063.1| chromosomal replication initiation protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 254

 Score = 89.1 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 76/199 (38%), Gaps = 21/199 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--------------- 111
           ++  G +G GK+ + N   + +       +  + +  L D  K +               
Sbjct: 1   MLFYGGTGLGKTHILNAIGNHALEKHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHC 60

Query: 112 ---LLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
              LL+D   L      + + FH  N +H     +++ +   P +       L SR +  
Sbjct: 61  DFFLLDDAQFLQGKPKLEEEFFHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWG 120

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              K+  PD +    ++ +     QI + +++  YI Q +  ++   E  + K+   A  
Sbjct: 121 ITAKVMPPDLETKLSIVKQKCQLNQIILPEEVMEYIAQHISDNIRQMEGAIIKISVNANL 180

Query: 226 RGMGITRSLAAEVLKETQQ 244
               I  +LA  VL++ Q+
Sbjct: 181 MNATIDLNLAKTVLEDLQK 199


>gi|293400058|ref|ZP_06644204.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306458|gb|EFE47701.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 451

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 86/232 (37%), Gaps = 28/232 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN------------ 82
            + D  +V     +A     S   +P +    + + G SG GK+ L +            
Sbjct: 116 YTFDSFVVGKNNREAYAAAMSACHYPGKFNNPLFIFGNSGLGKTHLLHAIGNFVKENKPD 175

Query: 83  -----IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLL--DFNDTQLFHIINS 132
                I+S+   +    ++       + +   +   +L++DI  L    +    F++ N 
Sbjct: 176 EKVLYIYSEDFVTLLIESMKNKTVEEVKEMICSVDYLLIDDIQRLKQSTSQEIFFNLYNK 235

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ-- 190
           +   +  +++T+   P         L SR  +   V +  P+ +  + ++ K    R+  
Sbjct: 236 LVSDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETAKAILQKKMEGRKEE 295

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKE 241
           I I+ ++  Y+  R    +   E  ++++     L     I  +   E+ KE
Sbjct: 296 IMIEDEVLDYLATRFSSDVRKLEGSLNELFFKAILYNPEKIDLAFTQEIFKE 347


>gi|284047387|ref|YP_003397726.1| chromosomal replication initiator protein DnaA [Acidaminococcus
           fermentans DSM 20731]
 gi|283951608|gb|ADB46411.1| chromosomal replication initiator protein DnaA [Acidaminococcus
           fermentans DSM 20731]
          Length = 386

 Score = 88.7 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 87/264 (32%), Gaps = 34/264 (12%)

Query: 17  KNDQPKNKEE--------QLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSR 65
           +   P    E        Q  F        + D+ +V ++      A   + + P++   
Sbjct: 22  EKTAPAAPPEKKSPASLPQKPFVTNLSPRYTFDNFVVGNSNRFAKAAAMAVANNPAFAYN 81

Query: 66  VVILVGPSGSGKSCLANIWSDKSR-----------------STRFSNIAKSLDSILIDTR 108
              L   SG GK+ L N   ++ R                 +    ++  +      +  
Sbjct: 82  PFFLFSDSGLGKTHLMNAIGNQIRKNHPDMKILYISSETFTNELIESVEHNRLEAFREKY 141

Query: 109 KPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           + +   L++DI  L   +    + FH  N++ + +  +++++   P         + SR 
Sbjct: 142 RSIDVLLIDDIQFLRNRESTQEEFFHTFNTLEKANKQIIISSDRPPAELDTLEERMISRF 201

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            +     I  PD +    ++  +    ++     +   I   +  ++   E   +++   
Sbjct: 202 NSGLTADIQHPDLETRMAILQNLAHTDKVPFPNDVILLIASSITSNIRELEGAYNRVCAY 261

Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246
           +      IT  L    LKE    D
Sbjct: 262 STVSKEPITLELCRSALKELNLLD 285


>gi|330718062|ref|ZP_08312662.1| chromosomal replication initiator protein DnaA [Leuconostoc fallax
           KCTC 3537]
          Length = 448

 Score = 88.7 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 92/272 (33%), Gaps = 36/272 (13%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61
           + +K +     P   K + P N   +           + +  +V S  EQA  +  +   
Sbjct: 79  SFIKPEIKIAQPQAIKQEIPDNPAFRRESDL--NEHFTFESWVVGSGNEQATAIARAVAE 136

Query: 62  WPS---RVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKP--- 110
            P       ++ G  G GK+ L     ++      ++       +   +   D+ +    
Sbjct: 137 EPGTNWNPYLIFGGVGLGKTHLMQAIGNEYAKTHPQARIKYATTEDFTNDFTDSLRAGEG 196

Query: 111 --------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         +L++DI  L   D    + F+  N++ +    ++MT+   P +   
Sbjct: 197 ATATFKRDYRTVDLLLIDDIQFLSGKDKIQEEFFNTFNALTKTGRQIVMTSDQLPKNIPD 256

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV 210
               L +R +A   + I  PD      ++        + I + +   I ++++   RSL 
Sbjct: 257 LQQRLTTRFEAGISMDILKPDLPTRVAILQNKAETDGLNIPRDVLELIAEKVDNNVRSLE 316

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            A    +             T+  A ++L + 
Sbjct: 317 GAFHKFEATLRF---MNKPATKETAQQILGDL 345


>gi|284988630|ref|YP_003407184.1| chromosomal replication initiator protein DnaA [Geodermatophilus
           obscurus DSM 43160]
 gi|284061875|gb|ADB72813.1| chromosomal replication initiator protein DnaA [Geodermatophilus
           obscurus DSM 43160]
          Length = 584

 Score = 88.7 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 82/234 (35%), Gaps = 26/234 (11%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +   
Sbjct: 245 NPKYVFDSFVIGNSNRFAHAAAVAVAEAPARAYNPLFIYGDSGLGKTHLLHAIGHYAARM 304

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDI---DLLDFNDTQLFH 128
                 R+ +  +  +  +                    +L++DI   +  +    + FH
Sbjct: 305 FPNVRVRYVSTEEFTNEFINLVHSGRAEDFRRRYRDIDFLLIDDIQFLERAERTQEEFFH 364

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++H     +++T+   P         L +R +   +  +  PD +    ++ K    
Sbjct: 365 TFNTLHNASKQIVITSDRAPKKLTTLEDRLRTRFEWGLITDVQAPDLETRIAILRKKAYG 424

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            ++ +   +  +I  +++ ++   E  + ++   A      +   LA  VLK+ 
Sbjct: 425 ERLQVPDPVLEFIASKVQTNIRELEGALIRVTAFASLNKQQVDLPLAELVLKDL 478


>gi|123965864|ref|YP_001010945.1| chromosomal replication initiation protein [Prochlorococcus marinus
           str. MIT 9515]
 gi|166214691|sp|A2BVM7|DNAA_PROM5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|123200230|gb|ABM71838.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus str. MIT 9515]
          Length = 463

 Score = 88.7 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 26/224 (11%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFS 94
            +V      A     +    P R    + + G  G GK+ L              +    
Sbjct: 133 FVVGPNSRMAHAAALAVAESPGREFNPLFICGGVGLGKTHLMQAIGHYRVEIDPEAKVLY 192

Query: 95  NIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSIHQY 136
              ++  S LI + +                +L++DI  L+  +    + F+  N++++ 
Sbjct: 193 VSTETFSSDLIQSIRKDGMHVFKNKYRSVDLLLIDDIQFLEGKEYTQEEFFNTFNALYEA 252

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              +++ +   P         L SR     +  I  PD +    ++ K     ++ + + 
Sbjct: 253 GKQIVIASDRPPSQIPKLQERLISRFSMGLIADIQPPDIETRMAILQKKAEQERMNLPRD 312

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           L  +I  R   ++   E    +    A   G+ +T    A +L 
Sbjct: 313 LVQFIAGRFSSNIRELEGAFTRAVAFASITGLPMTVQSIAPMLD 356


>gi|110003908|emb|CAK98248.1| putative chromosomal replication initiator protein dnaa
           [Spiroplasma citri]
          Length = 450

 Score = 88.7 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 81/240 (33%), Gaps = 40/240 (16%)

Query: 31  SFPRCLGISRDDLLVHSAI------EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           +       + ++ +   +         AV L D    W    + + G SG GK+ L +  
Sbjct: 103 NLAYYENYTFENFVRGDSNHEAMQAALAVAL-DLGKKW--NPLFIYGDSGLGKTHLLHAI 159

Query: 85  SDKSR--------------------STRFSNIAKSLDSIL---IDTRKPVLLEDIDLLDF 121
            +K                      +    N    +        D    +L++DI LL  
Sbjct: 160 ENKVNEIYKTNNRVKYLKADEFGKIAMDILNQGHEIIEAFKTSYDIYDCLLIDDIQLLAK 219

Query: 122 N---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDF 177
               +   FHI NS  + +  +++T+  +P   G     + SR      + +  PD +  
Sbjct: 220 RNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGLSIGLDSPDFETA 279

Query: 178 LEKVIVKMFADRQIFI-DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG---ITRS 233
           L+ +  K+     + +  ++   +I       +   E  + ++  LA+        IT +
Sbjct: 280 LKILEQKLKHQNNLGLFSEESLEFIALNFNSDVRKLEGAIKRLLFLAVMNKKPNEIITLA 339


>gi|461941|sp|P34028|DNAA_SPICI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|49346|emb|CAA79521.1| DnaA protein [Spiroplasma citri]
 gi|745456|prf||2016285A DnaA protein
          Length = 450

 Score = 88.7 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 81/240 (33%), Gaps = 40/240 (16%)

Query: 31  SFPRCLGISRDDLLVHSAI------EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           +       + ++ +   +         AV L D    W    + + G SG GK+ L +  
Sbjct: 103 NLAYYENYTFENFVRGDSNHEAMQAALAVAL-DLGKKW--NPLFIYGDSGLGKTHLLHAI 159

Query: 85  SDKSR--------------------STRFSNIAKSLDSIL---IDTRKPVLLEDIDLLDF 121
            +K                      +    N    +        D    +L++DI LL  
Sbjct: 160 ENKVNEIYKTNNRVKYLKADEFGKIAMDILNQGHEIIEAFKTSYDIYDCLLIDDIQLLAK 219

Query: 122 N---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDF 177
               +   FHI NS  + +  +++T+  +P   G     + SR      + +  PD +  
Sbjct: 220 RNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGLSIGLDSPDFETA 279

Query: 178 LEKVIVKMFADRQIFI-DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG---ITRS 233
           L+ +  K+     + +  ++   +I       +   E  + ++  LA+        IT +
Sbjct: 280 LKILEQKLKHQNNLGLFSEESLEFIALNFNSDVRKLEGAIKRLLFLAVMNKKPNEIITLA 339


>gi|87307796|ref|ZP_01089939.1| chromosomal replication initiator protein dnaA [Blastopirellula
           marina DSM 3645]
 gi|87289410|gb|EAQ81301.1| chromosomal replication initiator protein dnaA [Blastopirellula
           marina DSM 3645]
          Length = 460

 Score = 88.7 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 90/233 (38%), Gaps = 27/233 (11%)

Query: 39  SRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFS 94
           S + L+V         A  +I + P   +  + + GP GSGK+ L   I+ +  RS +F 
Sbjct: 121 SLEQLIVGECNKFASTAASMIMNRPGEINP-LFICGPQGSGKTHLLEGIYGEARRSKKFE 179

Query: 95  NI----AKSLDSILIDT---------------RKPVLLEDIDLLDF---NDTQLFHIINS 132
            +    A+   +  +D                   ++++D+          T+L H ++S
Sbjct: 180 RVVYLSAEQFTTYFLDALNGSGVANFRRKYRDADLLIIDDVQFFAGKRATRTELLHTLDS 239

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           I +    +++ A   P       P+L +R     V ++   D D   K+  K+ A R + 
Sbjct: 240 ITRRGGQIVLAADKRPTELSALGPELIARFSGGLVCEVHEIDRDTRRKMAEKLCASRDMN 299

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             + L  ++   +          ++++   A+S    +  ++A   L +  + 
Sbjct: 300 ASRGLLDWLADHLPGDARLMSGAMNRLWATAMSLDRPVDVAMAENALADMVRA 352


>gi|46446716|ref|YP_008081.1| chromosomal replication initiation protein [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|61212966|sp|Q6MC93|DNAA1_PARUW RecName: Full=Chromosomal replication initiator protein DnaA 1
 gi|46400357|emb|CAF23806.1| putative chromosomal replication initiator protein, dnaA
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 451

 Score = 88.3 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 76/208 (36%), Gaps = 29/208 (13%)

Query: 67  VILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           + L G  GSGK+ L    A+    +     +       D ++   R              
Sbjct: 149 IYLYGSGGSGKTHLLMSLAHALKAQGLKVIYVRAETFTDHVVTAIRAGEMSVFRQAYRNI 208

Query: 111 --VLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             +L++D+           + FH  N++H     +++ +   P    +  P L SR +  
Sbjct: 209 DVLLVDDVHVFSRKGATQEEFFHTFNTLHLEGKQIILASECSPQDLQLIEPRLVSRFEWG 268

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLAL 224
            V+ +       +  +++         +  K+A Y+++  + +     K ++ +   L L
Sbjct: 269 IVLPLKPLRPGEMRNLLIAKAKALHFELPLKIADYLIETFKSNAKALIKGLEALVLRLHL 328

Query: 225 SRGMGI-------TRSLAAEVLKETQQC 245
                I       T++L  ++++E Q+ 
Sbjct: 329 DAKHSITALSVTATKALLIDLIEEEQKT 356


>gi|289677080|ref|ZP_06497970.1| DNA replication initiation factor [Pseudomonas syringae pv.
           syringae FF5]
          Length = 140

 Score = 88.3 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 17/140 (12%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSC 79
           K  QL  S       +  +     A   A+    RL ++   W   ++ L G  G G++ 
Sbjct: 2   KPIQLPLSVRLRDDATFVNYYPG-ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTH 60

Query: 80  LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127
           L      +        +   L  ++         ++  + V L+D+  +      +  LF
Sbjct: 61  LLQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALF 120

Query: 128 HIINSIHQYDSSLLMTARTF 147
           H+ N +      LL+ A   
Sbjct: 121 HLFNRLRDSGRRLLIAASQS 140


>gi|33861122|ref|NP_892683.1| chromosomal replication initiation protein [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|61222626|sp|P0A3A2|DNAA_PROMP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|61222628|sp|P0A3A3|DNAA_PROS9 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|5616249|gb|AAD45692.1|AF158628_2 DnaA [Prochlorococcus marinus subsp. pastoris str. PCC 9511]
 gi|33639854|emb|CAE19024.1| chromosomal replication initiator protein DnaA [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 463

 Score = 88.3 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 26/224 (11%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFS 94
            +V      A     +    P R    + + G  G GK+ L              +    
Sbjct: 133 FVVGPNSRMAHAAALAVAESPGREFNPLFICGGVGLGKTHLMQAVGHYRVEIDPDAKVLY 192

Query: 95  NIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSIHQY 136
              ++  S LI + +                +L++DI  L+  +    + F+  N++++ 
Sbjct: 193 VSTETFSSDLIQSIRKDGMHAFKNKYRSVDLLLIDDIQFLEGKEYTQEEFFNTFNALYEA 252

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              +++ +   P         L SR     +  I  PD +    ++ K     ++ + + 
Sbjct: 253 GKQIVIASDRPPSQIPKLQERLISRFSMGLIADIQPPDIETRMAILQKKAEQERMNLPRD 312

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           L  +I  R   ++   E    +    A   G+ +T    A +L 
Sbjct: 313 LIQFIAGRFSSNIRELEGAFTRAVAFASITGLPMTVQSIAPMLD 356


>gi|37521042|ref|NP_924419.1| chromosomal replication initiation protein [Gloeobacter violaceus
           PCC 7421]
 gi|61212697|sp|Q7NKK4|DNAA_GLOVI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|35212038|dbj|BAC89414.1| chromosomal replication initiator protein [Gloeobacter violaceus
           PCC 7421]
          Length = 442

 Score = 88.3 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD----- 86
               +    +V +    A     +    P      + L G  G GK+ L           
Sbjct: 106 NSKYTFSRFVVGANNRMAHVAALAVAEMPGCNYNPLFLCGGVGLGKTHLMQAIGHYRLDI 165

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
            +R+       +   + LI+  +                ++++DI  ++  +    + FH
Sbjct: 166 DTRTKIAYVSTERFANELIEAIRRDAMQTFREHYRRVDLLMIDDIQFIEGKEYTQEEFFH 225

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++ +   P         L SR     +  I  PD +    ++ K    
Sbjct: 226 TFNALYESGKQIVIASDRPPQLIPRLQERLSSRFSMGLITDIQQPDIETRMAILQKKAEY 285

Query: 189 RQIFIDKKLAAYIVQ 203
             +F+ + +  +I  
Sbjct: 286 ENMFVPQDVIHHIAS 300


>gi|194476496|ref|YP_002048675.1| chromosomal replication initiation protein [Paulinella
           chromatophora]
 gi|171191503|gb|ACB42465.1| chromosomal replication initiation protein [Paulinella
           chromatophora]
          Length = 472

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 31/252 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71
           ++   P   +E+L+ S P        +  +V      A     +    P R    + + G
Sbjct: 115 RRISFPSENKERLYPSLPTLNKRYLFNRFVVGPNSRMAHAAALAVAESPGRCFNPLFICG 174

Query: 72  PSGSGKSCL--------------ANIW---SDKSRSTRFSNIAKSLDSILID---TRKPV 111
             G GK+ L              A I+   +++  +     I K    I  +       +
Sbjct: 175 GVGLGKTHLMQAIGNYRLKIDPEARIFFISTEQFTNDLIQAIKKDGMQIFRECYRKADML 234

Query: 112 LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI  ++       + FH  N++++ D  +++T+   P         L SR     + 
Sbjct: 235 LVDDIQFIEGKQYTQKEFFHTFNALYEADCQIVITSDRPPNQIPRLQERLVSRFSMGLIA 294

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            I  PD +    ++ K     ++ + K L  Y+  R   ++   E  + +    A++   
Sbjct: 295 DIQPPDLETRIAILNKKAEQEKMILSKDLVQYMAGRFSANIRELEGALTR----AIALAS 350

Query: 229 GITRSLAAEVLK 240
             +  + A  L 
Sbjct: 351 ITSLPMTATSLA 362


>gi|331265439|ref|YP_004325069.1| chromosomal replication initiator protein [Streptococcus oralis
           Uo5]
 gi|326682111|emb|CBY99727.1| chromosomal replication initiator protein [Streptococcus oralis
           Uo5]
          Length = 453

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D+ +       AV     +    +     + + G  G GK+ L N   ++    
Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175

Query: 92  RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127
                 K + +                        +   +L++DI  L         + F
Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++H     +++T+   P         L +R        I+ PD +    ++     
Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
                       Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  +Q
Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353


>gi|315612159|ref|ZP_07887074.1| DNA-directed DNA replication initiator protein [Streptococcus
           sanguinis ATCC 49296]
 gi|315315720|gb|EFU63757.1| DNA-directed DNA replication initiator protein [Streptococcus
           sanguinis ATCC 49296]
          Length = 453

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D+ +       AV     +    +     + + G  G GK+ L N   ++    
Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175

Query: 92  RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127
                 K + +                        +   +L++DI  L         + F
Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++H     +++T+   P         L +R        I+ PD +    ++     
Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
                       Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  +Q
Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353


>gi|306826187|ref|ZP_07459522.1| DNA-directed DNA replication initiator protein [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304431663|gb|EFM34644.1| DNA-directed DNA replication initiator protein [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 453

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D+ +       AV     +    +     + + G  G GK+ L N   ++    
Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175

Query: 92  RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127
                 K + +                        +   +L++DI  L         + F
Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++H     +++T+   P         L +R        I+ PD +    ++     
Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
                       Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  +Q
Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353


>gi|306828596|ref|ZP_07461790.1| DNA-directed DNA replication initiator protein [Streptococcus mitis
           ATCC 6249]
 gi|304429204|gb|EFM32290.1| DNA-directed DNA replication initiator protein [Streptococcus mitis
           ATCC 6249]
          Length = 453

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D+ +       AV     +    +     + + G  G GK+ L N   ++    
Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175

Query: 92  RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127
                 K + +                        +   +L++DI  L         + F
Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++H     +++T+   P         L +R        I+ PD +    ++     
Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
                       Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  +Q
Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353


>gi|293364516|ref|ZP_06611241.1| DNA-directed DNA replication initiator protein [Streptococcus
           oralis ATCC 35037]
 gi|307702806|ref|ZP_07639756.1| chromosomal replication initiator protein DnaA [Streptococcus
           oralis ATCC 35037]
 gi|291317024|gb|EFE57452.1| DNA-directed DNA replication initiator protein [Streptococcus
           oralis ATCC 35037]
 gi|307623662|gb|EFO02649.1| chromosomal replication initiator protein DnaA [Streptococcus
           oralis ATCC 35037]
          Length = 453

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D+ +       AV     +    +     + + G  G GK+ L N   ++    
Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175

Query: 92  RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127
                 K + +                        +   +L++DI  L         + F
Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++H     +++T+   P         L +R        I+ PD +    ++     
Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
                       Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  +Q
Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353


>gi|298290591|ref|YP_003692530.1| chromosomal replication initiator protein DnaA [Starkeya novella
           DSM 506]
 gi|296927102|gb|ADH87911.1| chromosomal replication initiator protein DnaA [Starkeya novella
           DSM 506]
          Length = 503

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 76/244 (31%), Gaps = 31/244 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV------VILVGPSGSGKSCLANIWSD 86
           P    ++     +  +   A          P+        + L    G GK+ L    + 
Sbjct: 160 PLDPRLTFASYRLGESNRLAHAAAQKVAGAPAGSGPVFNPLYLHAAVGLGKTHLLQAIAA 219

Query: 87  KSRSTRFSNIAKSLDS------ILIDTRKPVL----LEDIDLLDFNDTQLF--------- 127
                    +  + +         + ++  +     L  ID L  +D Q           
Sbjct: 220 AGAENGRRVVYLTAERFMYGFVAALKSQSALAFKEQLRGIDTLVIDDLQFLQGKSVQQEF 279

Query: 128 -HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            H +N++      +++ A   P         + SRL    VV+I+  D++   +++    
Sbjct: 280 CHTLNALMDSGRQVVIAADRPPAELDALEERVRSRLAGGLVVEIAPLDEELKLEILAART 339

Query: 187 A-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           A          +   +  +I +   ++    +  ++++          IT  +A   +++
Sbjct: 340 ASLGQQHPGFNVPGDVLGFIARHCGQNGRDLDGALNRLLAHNQLTSRAITLEMAETAVRD 399

Query: 242 TQQC 245
             + 
Sbjct: 400 LVRS 403


>gi|166154486|ref|YP_001654604.1| chromosomal replication initiation protein [Chlamydia trachomatis
           434/Bu]
 gi|166155361|ref|YP_001653616.1| chromosomal replication initiation protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335746|ref|ZP_07223990.1| chromosomal replication initiation protein [Chlamydia trachomatis
           L2tet1]
 gi|165930474|emb|CAP03967.1| Chromosomal replication initiation protein [Chlamydia trachomatis
           434/Bu]
 gi|165931349|emb|CAP06921.1| Chromosomal replication initiation protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 455

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 50/279 (17%)

Query: 4   MKEDYSFFVPDKQKND---QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLID 57
           +K       P   K       +NK+ QL  +         D+ +   + +    A   I 
Sbjct: 85  IKRSSPLVTPSIAKPATEVSEENKDFQLKLN----GAYRFDNFIEGPSNQFVKSAALGIA 140

Query: 58  SWPSWPSRVVILVGPSGSGKSCLAN--------------IWSDKSRSTRFSNIAKSLDSI 103
           + P      + + G  G GK+ L +              I    + +   +++   L   
Sbjct: 141 ARPGRSYNPLFIHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEAF-INDLVHHLRVK 199

Query: 104 LID-------TRKPVLLEDI----DLLDFNDT------QLFHIINSIHQYDSSLLMTART 146
            ID       +   +L++DI    +  +F +        L H+          +++T+  
Sbjct: 200 SIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLIHL-------SKQIVVTSDK 252

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P    +    + +R++   V  + +PD +    ++      + + I  ++A YI   + 
Sbjct: 253 PPGQLKLS-ERIIARMEWGLVAHVGVPDLETRVAILQHKAEQKGLNIPNEMAFYIADHVY 311

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            ++   E  ++K+    L     +T +   + LKE  + 
Sbjct: 312 GNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELFRA 350


>gi|47097243|ref|ZP_00234805.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47014398|gb|EAL05369.1| chromosomal replication initiator protein DnaA [Listeria
           monocytogenes str. 1/2a F6854]
          Length = 284

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 26/174 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
                 D  ++ S    A     +    P++    + + G  G GK+ L +         
Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
           K  +      ++   +  I + +                +L++DI  L   +    + FH
Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             N+++     +++++   P         L SR +   +  I+ PD +    ++
Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAIL 284


>gi|260221776|emb|CBA30678.1| Chromosomal replication initiator protein dnaA [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 486

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 73/199 (36%), Gaps = 23/199 (11%)

Query: 67  VILVGPSGSGKSCLAN-----------------IWSDKSRSTRFSNIAKSLDSILIDTR- 108
           + + G  G GK+ L +                 I +++  S       +       +   
Sbjct: 187 LFIYGGVGLGKTHLMHAVGNRLLVDKPGSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYH 246

Query: 109 --KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++D+      D    + F+   ++    S ++MT+ T+P         L SR  
Sbjct: 247 SLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFD 306

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   V I  P+ +    +++         + +++A ++ + +  ++   E  + K+   +
Sbjct: 307 SGLTVAIEPPELEMRVAILINKAHAEGSEMPEEVAFFVAKNVRSNVRELEGALRKILAYS 366

Query: 224 LSRGMGITRSLAAEVLKET 242
                 I+  LA E L++ 
Sbjct: 367 RFNQKEISIQLAREALRDL 385


>gi|94266099|ref|ZP_01289816.1| chromosomal replication initiator protein, DnaA [delta
           proteobacterium MLMS-1]
 gi|93453344|gb|EAT03778.1| chromosomal replication initiator protein, DnaA [delta
           proteobacterium MLMS-1]
          Length = 447

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 84/242 (34%), Gaps = 35/242 (14%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWS------- 85
              + D+ +V  +   A    ++  +        V +   +G GKS L +  +       
Sbjct: 110 PRYTFDEFMVGDSNALAHSACEAIATGTTQAEPCVFINAGTGLGKSHLTHAVAHHLYNNA 169

Query: 86  ----------DKSRSTRFSNI----AKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFH 128
                      +  +    +I     +            +L+ED+  L        +L  
Sbjct: 170 PGTRLCCLTSQQLTAELVHHIRNNSMEQFKEKFQRRCDVLLVEDVQTLSGRSKTQVELAE 229

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDL----CSRLKAATVVKISLPDDDFLEKVIVK 184
            ++S+      +L T    P      +PDL     SRL +  V  I+ PD      +I +
Sbjct: 230 AVDSLLDSGRRVLFTGSRSPRE----IPDLDEGVRSRLASGLVTTINPPDIKTRRLIIRR 285

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                ++ +D+++ AYI +++   +   E  +  +   A  R +  T  +  EV+     
Sbjct: 286 KAVFHKLALDEEMVAYIAEKVRGDIRKVESAIVGLKAKANLRRIAPTTEMVREVVATVAG 345

Query: 245 CD 246
            +
Sbjct: 346 EE 347


>gi|262277742|ref|ZP_06055535.1| chromosomal replication initiator protein DnaA [alpha
           proteobacterium HIMB114]
 gi|262224845|gb|EEY75304.1| chromosomal replication initiator protein DnaA [alpha
           proteobacterium HIMB114]
          Length = 462

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 82/237 (34%), Gaps = 29/237 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPS--WPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
              ++ +  +   + + A                + + G  G GK+ + N   ++ +   
Sbjct: 124 DPRLNFESFVTGESNQLAFSAAKRVTESLGHYNPLYIYGGVGLGKTHILNAIGNQLKQMD 183

Query: 93  FSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131
              I  S +                    +      ++L+DI  +   +    + F+  N
Sbjct: 184 KKVIYLSAERFMYQFVKSIKNKDTHKFKEIFRNADVLILDDIQFISGKEVTQEEFFYTFN 243

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--- 188
           S+ +  S ++++    P         + SRL    VV +  PD     +++ K       
Sbjct: 244 SLLENQSQVVISCDRSPNELDRIQDRIKSRLSGGLVVDVQPPDIGLRLEILKKRCLAEKN 303

Query: 189 ---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               +I I+ ++ ++I    + S+     +++++   A  +    T   A  +LK+ 
Sbjct: 304 HFGNEILINDEILSFISNEFKSSVRDMLGVLNRVIASARIQNKTPTLQDAKLILKDL 360


>gi|296110744|ref|YP_003621125.1| chromosomal replication initiation protein DnaA [Leuconostoc
           kimchii IMSNU 11154]
 gi|295832275|gb|ADG40156.1| chromosomal replication initiation protein DnaA [Leuconostoc
           kimchii IMSNU 11154]
          Length = 448

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 93/271 (34%), Gaps = 42/271 (15%)

Query: 10  FFVPDKQKNDQ-PKNKEEQ---LFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           F  P+ +  D  PK+   Q   L F          + D  +V +  E A  +  +    P
Sbjct: 79  FIKPELRVADALPKSTAIQTETLTFTRESDLNEAFTFDKFVVGTGNENAYAIARAVAEDP 138

Query: 64  SRVV---ILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDT 107
            +V    ++ G  G GK+ L     +    T               ++  +SL +    T
Sbjct: 139 GKVYNPYLIYGGVGLGKTHLMQAIGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGAT 198

Query: 108 RK---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                       +L++DI      +    + F+  N + +    ++MT+   P       
Sbjct: 199 AAFKKEYRTVDLLLIDDIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIV--- 255

Query: 156 PDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
            DL SRL     A   + I  PD      ++  +     + I   +   I  +++ ++  
Sbjct: 256 -DLQSRLTSRFEAGISMDIQKPDLPTRVAILKNLAETDNLDIPNDVLELIADKIDSNIRT 314

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            E    + + +   R    T+  A ++L + 
Sbjct: 315 LEGTFHRFEAMLRYRNKPATKETAQKILGDL 345


>gi|307707899|ref|ZP_07644374.1| chromosomal replication initiator protein DnaA [Streptococcus mitis
           NCTC 12261]
 gi|307615964|gb|EFN95162.1| chromosomal replication initiator protein DnaA [Streptococcus mitis
           NCTC 12261]
          Length = 453

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 76/242 (31%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  SRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----ND 123
                     K + +                        +   +L++DI  L        
Sbjct: 172 ILKNIPDARVKYIPAESFINDFLEHLRLGEMDKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N +H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNVLHNNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
               +           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 292 SKTENLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|118587493|ref|ZP_01544918.1| initiation of chromosome replication [Oenococcus oeni ATCC
           BAA-1163]
 gi|118432143|gb|EAV38884.1| initiation of chromosome replication [Oenococcus oeni ATCC
           BAA-1163]
          Length = 466

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 33/239 (13%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87
            +      + D  ++  A E A     +    P R    +++ G SG GK+ L     ++
Sbjct: 127 DYQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNR 186

Query: 88  SRSTRFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---T 124
            +  +   I + + +                       +    +L++DI +L   D    
Sbjct: 187 LKELQPDAIVRYITTDDFMNDWVNAISKKTTTDFTSTYENVDLLLVDDIQMLQGKDRFQE 246

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + F+I N I +    ++MT+   P         L SR        I  PD      ++  
Sbjct: 247 EFFNIFNKITKSQKQIVMTSDVLPKDIPGLNARLVSRFMQGVAYDIQKPDFPTRLAILKN 306

Query: 185 MFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              +  I ID +    I ++++   R L  A   +  M       G  I  S A ++L+
Sbjct: 307 KSEEVGISIDNQTLTLIAEQIDTNVRELEGAFNTLTLMARA----GRPINVSNAQKILE 361


>gi|116490127|ref|YP_809648.1| chromosomal replication initiator protein DnaA [Oenococcus oeni
           PSU-1]
 gi|290889521|ref|ZP_06552611.1| hypothetical protein AWRIB429_0001 [Oenococcus oeni AWRIB429]
 gi|122277682|sp|Q04HR6|DNAA_OENOB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|116090852|gb|ABJ56006.1| DNA replication ATPase initiation [Oenococcus oeni PSU-1]
 gi|290480719|gb|EFD89353.1| hypothetical protein AWRIB429_0001 [Oenococcus oeni AWRIB429]
          Length = 450

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 33/239 (13%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87
            +      + D  ++  A E A     +    P R    +++ G SG GK+ L     ++
Sbjct: 111 DYQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNR 170

Query: 88  SRSTRFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---T 124
            +  +   I + + +                       +    +L++DI +L   D    
Sbjct: 171 LKELQPDAIVRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDIQMLQGKDRFQE 230

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + F+I N I +    ++MT+   P         L SR        I  PD      ++  
Sbjct: 231 EFFNIFNKITKSQKQIVMTSDVLPKDIPGLNARLVSRFMQGVAYDIQKPDFPTRLAILKN 290

Query: 185 MFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              +  I ID +    I ++++   R L  A   +  M       G  I  S A ++L+
Sbjct: 291 KSEEVGISIDNQTLTLIAEQIDTNVRELEGAFNTLTLMARA----GRPINVSNAQKILE 345


>gi|289811521|ref|ZP_06542150.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 226

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 53/120 (44%)

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N++ + +  +++T+  +P         L SR      V I  P+ +    ++
Sbjct: 6   QEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL 65

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 66  MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 125


>gi|289166910|ref|YP_003445177.1| DNA biosynthesis, initiation, binding protein [Streptococcus mitis
           B6]
 gi|288906475|emb|CBJ21305.1| DNA biosynthesis, initiation, binding protein [Streptococcus mitis
           B6]
          Length = 453

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 75/242 (30%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  SRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----ND 123
                     K + +                        +   +L++DI  L        
Sbjct: 172 ILKNIPDARVKYIPAESFINDFLEHLRLGEMDKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N +H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNVLHNNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 292 SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|307711216|ref|ZP_07647638.1| chromosomal replication initiator protein DnaA [Streptococcus mitis
           SK321]
 gi|307617178|gb|EFN96356.1| chromosomal replication initiator protein DnaA [Streptococcus mitis
           SK321]
          Length = 453

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 75/242 (30%), Gaps = 28/242 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  SRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----ND 123
                     K + +                        +   +L++DI  L        
Sbjct: 172 ILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N +H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNVLHSNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242
                           Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  
Sbjct: 292 SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRAR 351

Query: 243 QQ 244
           +Q
Sbjct: 352 KQ 353


>gi|296120275|ref|YP_003628053.1| chromosomal replication initiator protein DnaA [Planctomyces
           limnophilus DSM 3776]
 gi|296012615|gb|ADG65854.1| chromosomal replication initiator protein DnaA [Planctomyces
           limnophilus DSM 3776]
          Length = 850

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 92/231 (39%), Gaps = 30/231 (12%)

Query: 42  DLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-------- 89
           DL+V +  E A+       D  P+ P   + L G  G GK+ L    S + R        
Sbjct: 513 DLVVGTGNELALAAARKVCDEVPA-PFNPLYLFGNVGIGKTHLLEGISRQLRRQHPGLNV 571

Query: 90  ----STRFSN-IAKSLDSILIDTRK-------PVLLEDIDLLDFND---TQLFHIINSIH 134
               + +F+N   ++L    + + +        +L++D+D LD       +  H    + 
Sbjct: 572 LMMTAEQFANCFTQALRDKTLPSFRQKFRNVDALLIDDVDFLDNTRVIREEFLHTFTELA 631

Query: 135 QYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
           +   ++++TA   P      L D L +R  +  + ++  PD    E+++    A     I
Sbjct: 632 ERGRAIVLTADRHPKLLS-KLGDELVTRFMSGLICRVEAPDQATRERIVQMKAARMGTDI 690

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            ++   ++ Q+   ++   E  ++ +          +  + A ++L + ++
Sbjct: 691 SEEALMWVAQKFRNNVRELEGALNCLHTWYTMSERRVGLATARQILADLER 741


>gi|328951747|ref|YP_004369081.1| Chromosomal replication initiator protein dnaA [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452071|gb|AEB07900.1| Chromosomal replication initiator protein dnaA [Desulfobacca
           acetoxidans DSM 11109]
          Length = 461

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 81/236 (34%), Gaps = 27/236 (11%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANI---------- 83
             + +  +V ++   A +   +         R + L    G GKS L+            
Sbjct: 112 AFTFEQFVVGASNRFAFQASRALAGNDAFYGRTLFLTAQPGLGKSHLSQAVGNYIQTNYR 171

Query: 84  -----------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHI 129
                      ++++  +                    +LLE +  L   +    +L + 
Sbjct: 172 HHQVFYLTAEDFANEMVAALRQGAMAQFKDKFRRQCDTLLLEGVHFLSGKEKIQAELCYT 231

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
           ++ +   +  L+ T+   P+       +L SR     +  I  PD      ++ +   DR
Sbjct: 232 LDCLADLNKKLVFTSPYLPMEIPHLKQELLSRFTGGVITPIDPPDFSTRVSILTRKAQDR 291

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           Q+ + +++  ++   + + +      +D +   A +    I   LA EVL++ Q  
Sbjct: 292 QVQVPREVKEHLATYLTQDVRQMVSALDNLLLKAATLKTDINLDLANEVLRDFQAA 347


>gi|332198657|gb|EGJ12740.1| chromosomal replication initiator protein DnaA [Streptococcus
           pneumoniae GA41317]
          Length = 380

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 27/229 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N++H     +++T+   P         L +R        I+ PD +    ++ 
Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
                           Y+  + + ++   E  ++ +  +A  +   I+ 
Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKSRISL 340


>gi|218510164|ref|ZP_03508042.1| hypothetical protein RetlB5_23469 [Rhizobium etli Brasil 5]
          Length = 69

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/66 (62%), Positives = 51/66 (77%)

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +IVK+FADRQ++ID KL  YIV RMERSL  A+ +V+++D LALSRG  ITRSLAAEVL 
Sbjct: 1   MIVKLFADRQLYIDDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLN 60

Query: 241 ETQQCD 246
           E    +
Sbjct: 61  ELGNSE 66


>gi|300172303|ref|YP_003771468.1| chromosomal replication initiator protein DnaA [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299886681|emb|CBL90649.1| chromosomal replication initiator protein DnaA [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 448

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 81/240 (33%), Gaps = 36/240 (15%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSR-- 89
               + D  +V +  E A  +  +    P RV    ++ G  G GK+ L     +     
Sbjct: 110 NENFTFDKFVVGTGNENAYAIARAVAEDPGRVYNPYLIYGGVGLGKTHLMQAIGNAYSKT 169

Query: 90  ---STRFSNIAKSLDSILIDTRKP-----------------VLLEDIDLLDFND---TQL 126
              +      A+   +   ++ +                  +L++DI      +    + 
Sbjct: 170 TPSARIKYATAEDFLNDFTESLRAGEGATAVFKKEYRTVDLLLIDDIQFWSGKEKVQEEF 229

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVI 182
           F+  N + +    ++MT+   P        DL SRL     A   + I  PD      ++
Sbjct: 230 FNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLTSRFEAGISMDIQKPDLPTRVAIL 285

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +     + I   +   I  +++ ++   E    + + +   R    T+  A ++L + 
Sbjct: 286 KNLAETDNLEIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRYRNKPATKETAQKILGDL 345


>gi|296448171|ref|ZP_06890069.1| chromosomal replication initiator protein DnaA [Methylosinus
           trichosporium OB3b]
 gi|296254302|gb|EFH01431.1| chromosomal replication initiator protein DnaA [Methylosinus
           trichosporium OB3b]
          Length = 497

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 77/243 (31%), Gaps = 31/243 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSD 86
           P    +S    LV  + + A           +        +      G GK+ L    + 
Sbjct: 155 PLDRRLSFSTFLVGPSNQLAYAAACRVADARAGDHPLFNPLYTHAAVGLGKTHLLQAVAR 214

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVL----------LEDIDLLDFNDTQLF--------- 127
            +   R   I  + +  +      +           L +ID+L  +D Q           
Sbjct: 215 AANDNRRRVIYLTAEKFMSGFVSALTAQTSMAFKEKLRNIDVLIIDDVQFLQGKSIQQEF 274

Query: 128 -HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            H +N++      +++ A   P         + SR K    V I   D++   K++    
Sbjct: 275 CHTLNALIDDGKQVVVAADRPPSDLETLDERVLSRFKGGLCVDIGPLDEELRVKILEARI 334

Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           A  Q       +   + +Y+ + +  +    E  V+++   +   G  +    A   +++
Sbjct: 335 AAAQEAQPSFHVPPAVVSYVAKTIVTNGRDLEGAVNRLLAHSTLNGAPLCVETAENAIRD 394

Query: 242 TQQ 244
             +
Sbjct: 395 LVR 397


>gi|328477669|gb|EGF47698.1| chromosomal replication initiation protein [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 299

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 72/204 (35%), Gaps = 25/204 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR------------------ 108
           + + G  G GK+ L     +       +   K + S                        
Sbjct: 19  LFIYGGVGLGKTHLMQAIGNLVLENNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYR 78

Query: 109 --KPVLLEDI----DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
               +L++DI    D     +   FH  N++++    +++T+   P         L SR 
Sbjct: 79  NVDLLLVDDIQFFGDKEATQEE-FFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRF 137

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
                V ++ PD +    ++        + I     +YI  ++E ++   E  + ++   
Sbjct: 138 NKGLSVDVTPPDLETRIAILRNKANAEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAF 197

Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246
           +  +   IT SLAA+ LK  +  D
Sbjct: 198 STMKNEDITTSLAADALKALKLDD 221


>gi|94984110|ref|YP_603474.1| chromosomal replication initiator protein DnaA [Deinococcus
           geothermalis DSM 11300]
 gi|94554391|gb|ABF44305.1| chromosomal replication initiator protein DnaA [Deinococcus
           geothermalis DSM 11300]
          Length = 470

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 92/260 (35%), Gaps = 32/260 (12%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68
           +P +  +  P    + L          + ++ +V      A     +    P +    + 
Sbjct: 112 LPGQPPSQVPSESRQVL------NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLF 165

Query: 69  LVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV 111
           + G  G GK+ L +                   ++   +   + I     +   +  + V
Sbjct: 166 IYGDVGLGKTHLMHAVGHYIMERFPDKRIEYVSTESFTNELINAIRDDKTTQFRNRYRSV 225

Query: 112 ---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
              L++DI  L   +    + FH  N++++    +++++   P         L SR +  
Sbjct: 226 DLLLVDDIQFLAGKERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWG 285

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I  P+ +    ++       +I I +++   I +++  ++   E  + ++   A  
Sbjct: 286 LITDIQTPEFETRVAILKMNAEHNRIDIPQEVLELIARQVTSNIRELEGALMRVVAFASL 345

Query: 226 RGMGITRSLAAEVLKETQQC 245
             +  +R++AA+ L      
Sbjct: 346 NNVPFSRAVAAKALSNVFAP 365


>gi|160946604|ref|ZP_02093807.1| hypothetical protein PEPMIC_00562 [Parvimonas micra ATCC 33270]
 gi|158446988|gb|EDP23983.1| hypothetical protein PEPMIC_00562 [Parvimonas micra ATCC 33270]
          Length = 471

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 72/208 (34%), Gaps = 26/208 (12%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDK-SRSTRFSNIAKSLDSILIDTRKPV------- 111
           P+     + + G SG GK+ L      +  ++     +  S +   ID    +       
Sbjct: 162 PAGTYNPLFIYGNSGLGKTHLMKAIGHEIHKNFDCKVLYLSSEKFTIDLIDSIRDKNQNS 221

Query: 112 --------------LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                         L++DI  +        + FH  N ++  +  +++++   P      
Sbjct: 222 ESEFRKKYRNVDVLLIDDIQFIAGKTATQEEFFHTFNELYSRNKQIIISSDRPPKEIKNL 281

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE- 213
              L SR      V I  PD +    ++        I +  ++  +I   ++ ++   E 
Sbjct: 282 EDRLKSRFNMGLTVDIQPPDFETRMAILQDKVKYEPIALSNEVLEFIAMNIKTNIRELEG 341

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKE 241
            L++ + +  L +   +T      +L +
Sbjct: 342 ALINVLAHYKLKQDAPMTVDYVKRILAQ 369


>gi|315271245|gb|ACO44797.2| putative chromosomal replication initiator protein [Deinococcus
           deserti VCD115]
          Length = 456

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 90/237 (37%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----WSDK 87
               + ++ +V      A     +    P +    + + G  G GK+ L +      +++
Sbjct: 115 NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLFIYGDVGLGKTHLMHAVGHYIAER 174

Query: 88  SRSTRFSNIA-KSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
               R   ++ ++  + LI+  +                +L++DI  L   +    + FH
Sbjct: 175 FPEKRIEYVSTETFTNELINAIREDKTTQFRNRYRSVDLLLVDDIQFLAGKERTQEEFFH 234

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++++   P         L SR +   +  I  P+ +    ++      
Sbjct: 235 TFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEFETRVAILKMNAEH 294

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +I I +++   I +++  ++   E  + ++   +    +  +R++A++ L      
Sbjct: 295 NRIDIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPFSRAVASKALSNVFAP 351


>gi|78485392|ref|YP_391317.1| chromosomal replication initiator protein DnaA [Thiomicrospira
           crunogena XCL-2]
 gi|78363678|gb|ABB41643.1| regulatory inactivation of DnaA Hda protein [Thiomicrospira
           crunogena XCL-2]
          Length = 237

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 27/237 (11%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP-----SWPSRVVILVGPSGSGKSCLA 81
           QL         +  D  +     E  V  ++ +      S         G SGSGK+ + 
Sbjct: 4   QLPLKIGLREEVCFDTFIAEE--EGVVLALNRFQQTLLKSNNGDAFYFQGESGSGKTHIL 61

Query: 82  NIWSD-----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFH 128
                     KS S        SL  I      ++    V L+D++ +      +  L  
Sbjct: 62  QAACRFMTEKKSSSVYLPLGDDSLPLIPDVLNGLEQTLLVCLDDVENIIGQPEWEHALAS 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL----PDDDFLEKVIVK 184
           ++    +    ++++      SW +   +L   + +   + +      PD       + +
Sbjct: 122 LLMRSKELGHKVVLSGTNPAGSWSIATTELTHAMMSVLPITLKPLTNKPDIVL---AMQR 178

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                   +   +  Y++++    L     ++  ++         +T     ++L +
Sbjct: 179 HALKLGFELPLDVGNYLIKQFSTDLQELLSVLRILEQATFVEKRRMTLPFVKQILTK 235


>gi|226354811|ref|YP_002784551.1| chromosomal replication initiation protein [Deinococcus deserti
           VCD115]
 gi|259645247|sp|C1CXJ1|DNAA_DEIDV RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 459

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 90/237 (37%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----WSDK 87
               + ++ +V      A     +    P +    + + G  G GK+ L +      +++
Sbjct: 118 NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLFIYGDVGLGKTHLMHAVGHYIAER 177

Query: 88  SRSTRFSNIA-KSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
               R   ++ ++  + LI+  +                +L++DI  L   +    + FH
Sbjct: 178 FPEKRIEYVSTETFTNELINAIREDKTTQFRNRYRSVDLLLVDDIQFLAGKERTQEEFFH 237

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++++   P         L SR +   +  I  P+ +    ++      
Sbjct: 238 TFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEFETRVAILKMNAEH 297

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            +I I +++   I +++  ++   E  + ++   +    +  +R++A++ L      
Sbjct: 298 NRIDIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPFSRAVASKALSNVFAP 354


>gi|182680573|ref|YP_001828733.1| chromosomal replication initiation protein [Xylella fastidiosa M23]
 gi|182630683|gb|ACB91459.1| chromosomal replication initiator protein DnaA [Xylella fastidiosa
           M23]
          Length = 443

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 31/246 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP------SGSGKSCLAN 82
            F+       + D+ +   + + A          P        P      +G GK+ L  
Sbjct: 102 PFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRT--HNPLLLYGGTGLGKTHLMF 159

Query: 83  IWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122
              +  R                FS + ++L    +D           +L++DI      
Sbjct: 160 AAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGK 219

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           D    + FH  N++      +++T   +P       P L SRL     V I  PD +   
Sbjct: 220 DRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRA 279

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++    +R   I  ++A  I ++M  ++   E  ++ +   A   G  +T   + E L
Sbjct: 280 AIVLAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETL 339

Query: 240 KETQQC 245
           ++  + 
Sbjct: 340 RDLLRA 345


>gi|188579288|ref|YP_001922733.1| chromosomal replication initiation protein [Methylobacterium populi
           BJ001]
 gi|179342786|gb|ACB78198.1| chromosomal replication initiator protein DnaA [Methylobacterium
           populi BJ001]
          Length = 501

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 79/240 (32%), Gaps = 30/240 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWP-----SWPSRVVILVGPSGSGKSCLANIWSDK 87
           P    ++    +V  +   A    +              + +    G GK+ L +     
Sbjct: 160 PLDARLTFASFVVGRSNALAHAAAERIARSDGDGALYNPLYVHAGVGLGKTHLLHAAGHA 219

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127
           +R      I  + D  +                  +     ++L+D+  +      T+  
Sbjct: 220 AREAGRRVIYLTADRFMYGFVNALKTQSALAFKERLRAIDLLILDDVQFIQGKSIQTEFG 279

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF- 186
           H +N++      +++ +   P         + SRL    VV+I   D+     ++     
Sbjct: 280 HTLNALIDSGRQVVVASDRPPTELEALDERVRSRLAGGLVVEIGGLDEGLRASILSARLD 339

Query: 187 ADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           A RQ      +   ++AY+ + +  +    E  V+++   A   G  +T   A   +++ 
Sbjct: 340 AVRQSHPNFEVSPAVSAYVARAITANGRDLEGAVNRLLAHATLTGAPVTVETAETAIRDL 399


>gi|15835165|ref|NP_296924.1| chromosomal replication initiation protein [Chlamydia muridarum
           Nigg]
 gi|270285337|ref|ZP_06194731.1| chromosomal replication initiation protein [Chlamydia muridarum
           Nigg]
 gi|270289353|ref|ZP_06195655.1| chromosomal replication initiation protein [Chlamydia muridarum
           Weiss]
 gi|301336734|ref|ZP_07224936.1| chromosomal replication initiation protein [Chlamydia muridarum
           MopnTet14]
 gi|14194689|sp|Q9PKB9|DNAA2_CHLMU RecName: Full=Chromosomal replication initiator protein DnaA 2
 gi|7190587|gb|AAF39386.1| chromosomal replication initiator protein DnaA [Chlamydia muridarum
           Nigg]
          Length = 455

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 92/256 (35%), Gaps = 47/256 (18%)

Query: 21  PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGK 77
            +NK+ QL  +         D+ +   + +    A   I + P      + + G  G GK
Sbjct: 105 EENKDFQLKLN----GAYRFDNFIEGPSNQFVKSAALGIAARPGRSYNPLFIHGGVGLGK 160

Query: 78  SCLAN--------------IWSDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDI 116
           + L +              I    + +   +++   L    ID       +   +L++DI
Sbjct: 161 THLLHAVGHYVREHHKNLRIHCITTEAF-INDLVHHLRVKSIDKMKNFYRSLDLLLVDDI 219

Query: 117 ----DLLDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
               +  +F +        L H+          +++T+   P    +    + +R++   
Sbjct: 220 QFLQNRQNFEEEFCNTFETLIHL-------SKQIVVTSDKPPGQLKLS-ERIIARMEWGL 271

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           V  + +PD +    ++      + + I  ++A YI   +  ++   E  ++K+    L  
Sbjct: 272 VAHVGVPDLETRVAILQHKAEQKGLNIPNEIAFYIADHVYGNVRQLEGAINKLTAYCLLF 331

Query: 227 GMGITRSLAAEVLKET 242
              +T +   + LKE 
Sbjct: 332 NKPLTETTVRDTLKEL 347


>gi|85713964|ref|ZP_01044953.1| chromosomal replication initiator protein, DnaA [Nitrobacter sp.
           Nb-311A]
 gi|85699090|gb|EAQ36958.1| chromosomal replication initiator protein, DnaA [Nitrobacter sp.
           Nb-311A]
          Length = 509

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 77/245 (31%), Gaps = 32/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +   +   A                    + +    G GK+ L     W
Sbjct: 166 PLDPRLTFQSFVTGRSNALAHAAARQVAEGRRGDSVMFNPLYIHAGVGLGKTHLLQAVTW 225

Query: 85  SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125
           +  + + R             F    K+  ++     +     ++++D+  L       +
Sbjct: 226 AGNAGTERRVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQFLQGKSTQAE 285

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK- 184
             H +N++      +++ A   P         + SRL    VV++    ++    ++   
Sbjct: 286 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGEELRLGILRSR 345

Query: 185 ----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                       + +++  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 346 VEAARAHHASFDVPEQVLDYLAKTITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEREVR 405

Query: 241 ETQQC 245
           +  + 
Sbjct: 406 DLVRP 410


>gi|323342257|ref|ZP_08082489.1| replication initiation protein DnaA [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463369|gb|EFY08563.1| replication initiation protein DnaA [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 471

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 71/214 (33%), Gaps = 29/214 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86
               + D+ +V  + +++          P +    + + G SG GK+ L N   +     
Sbjct: 132 APNQTFDNFVVGPSNKESHSAALGCAYRPGQFYTPLFIYGNSGLGKTHLLNAIGNYIKKL 191

Query: 87  ---------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFH 128
                          +  +    N         +     +L++DI  L   +      FH
Sbjct: 192 NPDARVLYTSSSDFVRQVANSIQNRTIEDFKEQMYNLDVLLIDDIQFLAGKEKSHEIFFH 251

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I N +      +++T+   P         L SR  +   V +  P+ +    ++      
Sbjct: 252 IFNELIYNKKQIVITSDRLPTEIKGLEDRLISRFSSGLSVGVDSPEFETSLAILELKIKH 311

Query: 189 RQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219
           + +     D+ + +YI     + +   E  ++++
Sbjct: 312 KSVDPGLFDEDVLSYIASNFSKDVRMLEGALNRL 345


>gi|28197946|ref|NP_778260.1| chromosomal replication initiation protein [Xylella fastidiosa
           Temecula1]
 gi|32129493|sp|Q87FC6|DNAA_XYLFT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|28056006|gb|AAO27909.1| chromosomal replication initiator [Xylella fastidiosa Temecula1]
 gi|307579027|gb|ADN62996.1| chromosomal replication initiation protein [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 439

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 31/246 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP------SGSGKSCLAN 82
            F+       + D+ +   + + A          P        P      +G GK+ L  
Sbjct: 98  PFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRT--HNPLLLYGGTGLGKTHLMF 155

Query: 83  IWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122
              +  R                FS + ++L    +D           +L++DI      
Sbjct: 156 AAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGK 215

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           D    + FH  N++      +++T   +P       P L SRL     V I  PD +   
Sbjct: 216 DRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRA 275

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++    +R   I  ++A  I ++M  ++   E  ++ +   A   G  +T   + E L
Sbjct: 276 AIVLAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETL 335

Query: 240 KETQQC 245
           ++  + 
Sbjct: 336 RDLLRA 341


>gi|33240018|ref|NP_874960.1| chromosomal replication initiation protein [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|37154736|sp|Q51896|DNAA_PROMA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|33237544|gb|AAP99612.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 461

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 29/243 (11%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW 84
           L          +R   +V      A     +    P R    + + G  G GK+ L    
Sbjct: 119 LPL-LNLRYVFNR--FVVGPNSRMAHAAAMAVAESPGREFNPLFICGGVGLGKTHLMQAI 175

Query: 85  S------DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND- 123
                  D      + +     + +++                   +L++DI  ++  + 
Sbjct: 176 GHYRLEIDPGAKVSYVSTETFTNDLILAIRQDRMQAFRDRYRAADLILVDDIQFIEGKEY 235

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++H   S +++ +   P         L SR     +  +  PD +    +
Sbjct: 236 TQEEFFHTFNALHDAGSQIVLASDRPPSQIPRLQERLMSRFSMGLIADVQAPDLETRMAI 295

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + K     ++ + + L  +I  R   ++   E  + +    A   G+ +T    A +L  
Sbjct: 296 LQKKAEQERVGLPRDLIQFIAGRFTSNIRELEGALTRAIAFASITGLPMTVDSIAPMLDP 355

Query: 242 TQQ 244
             Q
Sbjct: 356 NGQ 358


>gi|71901968|ref|ZP_00684019.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Ann-1]
 gi|71728273|gb|EAO30453.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Ann-1]
          Length = 443

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 31/246 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP------SGSGKSCLAN 82
            F+       + D+ +   + + A          P        P      +G GK+ L  
Sbjct: 102 PFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRT--HNPLLLYGGTGLGKTHLMF 159

Query: 83  IWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122
              +  R                FS + ++L    +D           +L++DI      
Sbjct: 160 AAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGK 219

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           D    + FH  N++      +++T   +P       P L SRL     V I  PD +   
Sbjct: 220 DRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRA 279

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++    +R   I  ++A  I ++M  ++   E  ++ +   A   G  +T   + E L
Sbjct: 280 AIVLAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETL 339

Query: 240 KETQQC 245
           ++  + 
Sbjct: 340 RDLLRA 345


>gi|319790695|ref|YP_004152335.1| chromosomal replication initiator protein dnaa [Variovorax
           paradoxus EPS]
 gi|315593158|gb|ADU34224.1| chromosomal replication initiator protein DnaA [Variovorax
           paradoxus EPS]
          Length = 459

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 74/199 (37%), Gaps = 23/199 (11%)

Query: 67  VILVGPSGSGKSCLAN-----------------IWSDKSRSTRFSNIAKSLDSILIDTR- 108
           + + G  G GK+ L +                 I +++  S       +       +   
Sbjct: 160 LFIYGGVGLGKTHLMHAVGNRLLADRPDSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYH 219

Query: 109 --KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++D+      D    + F+   ++    S ++MT+ T+P         L SR  
Sbjct: 220 SLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFD 279

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   V I  P+ +    +++         + +++A ++ + +  ++   E  + K+   +
Sbjct: 280 SGLTVAIEPPELEMRVAILINKARAESAEMPEEVAFFVAKNVRSNVRELEGALRKILAYS 339

Query: 224 LSRGMGITRSLAAEVLKET 242
                 I+ +LA E L++ 
Sbjct: 340 RFNQKEISIALAREALRDL 358


>gi|283852476|ref|ZP_06369744.1| Chromosomal replication initiator DnaA domain protein
           [Desulfovibrio sp. FW1012B]
 gi|283572084|gb|EFC20076.1| Chromosomal replication initiator DnaA domain protein
           [Desulfovibrio sp. FW1012B]
          Length = 446

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 73/218 (33%), Gaps = 25/218 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN----- 82
            FP     + +  L +      + L               ++ GPSGSGK+ L       
Sbjct: 108 DFPFGHRFTFETFLANEKNRFPLALAREVARGREVRYNPFLVCGPSGSGKTHLLRAMANA 167

Query: 83  IWSDKSRSTRFSNIAKSLDSIL------------IDTRKPVLLE---DIDLLDFNDTQLF 127
           +   ++ ++ F      L +              +     + ++   DI      + +L 
Sbjct: 168 VARSQAGASVFFGSVDDLQNRYATSQSRHEIRSEVAAHDWLFIDELTDIQRAPDLEQELI 227

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            + N+ H     ++ ++R    S     P   SRL+   +V +  PD D     +     
Sbjct: 228 FLFNAFHDAGKQMVFSSRERTASCDFFDPTFKSRLEWGLMVHVKPPDLDVRIASVEAANR 287

Query: 188 DRQIFIDKKLAAYIVQRME--RSLVFAEKLVDKMDNLA 223
           D+++ + ++    +  R E  R L      ++     A
Sbjct: 288 DKRLGLSREQVLTLASRFEGFRQLEGVLLRIEAFRRHA 325


>gi|149186374|ref|ZP_01864687.1| chromosomal replication initiator protein [Erythrobacter sp. SD-21]
 gi|148829963|gb|EDL48401.1| chromosomal replication initiator protein [Erythrobacter sp. SD-21]
          Length = 489

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86
              ++    +   A   A        +        + L   +G GK+ L +         
Sbjct: 154 DASLTFAAFVTGEANILAFNAAQRMAATEKPQFSPLYLKAATGQGKTHLLHAIGHTFLQT 213

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLL---DFNDTQLFH 128
            +RS  F   A+      +   K                +L++DI  +        +L +
Sbjct: 214 HNRSRIFYCSAERFMVEFVQALKANRMIEFKARLRSFDLLLVDDIQFIIGKASAQEELLY 273

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KMFA 187
            I+++      L+  A   P +     P L SRL    V  I   D +  +K++  K+  
Sbjct: 274 TIDALLAEGKRLVFAADRAPQALDGVEPRLLSRLSMGLVADIQPADIELRKKILHSKLTK 333

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              + + + +  ++ + + R++      ++K+   A   G  ++  LA E L +
Sbjct: 334 FAPLAVPEDVLDFLARTITRNVRELVGGLNKLIAYAQLTGQEVSLQLAEEQLTD 387


>gi|239813020|ref|YP_002941930.1| chromosomal replication initiation protein [Variovorax paradoxus
           S110]
 gi|239799597|gb|ACS16664.1| chromosomal replication initiator protein DnaA [Variovorax
           paradoxus S110]
          Length = 459

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 74/199 (37%), Gaps = 23/199 (11%)

Query: 67  VILVGPSGSGKSCLAN-----------------IWSDKSRSTRFSNIAKSLDSILIDTR- 108
           + + G  G GK+ L +                 I +++  S       +       +   
Sbjct: 160 LFIYGGVGLGKTHLMHAVGNRLLADRPDSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYH 219

Query: 109 --KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               +L++D+      D    + F+   ++    S ++MT+ T+P         L SR  
Sbjct: 220 SLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFD 279

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   V I  P+ +    +++         + +++A ++ + +  ++   E  + K+   +
Sbjct: 280 SGLTVAIEPPELEMRVAILINKARAESAEMPEEVAFFVAKNVRSNVRELEGALRKILAYS 339

Query: 224 LSRGMGITRSLAAEVLKET 242
                 I+ +LA E L++ 
Sbjct: 340 RFNQKEISIALAREALRDL 358


>gi|71275534|ref|ZP_00651820.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Dixon]
 gi|71900181|ref|ZP_00682321.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Ann-1]
 gi|170729252|ref|YP_001774685.1| chromosomal replication initiation protein [Xylella fastidiosa M12]
 gi|71163834|gb|EAO13550.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Dixon]
 gi|71730070|gb|EAO32161.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa
           Ann-1]
 gi|167964045|gb|ACA11055.1| chromosomal replication initiator [Xylella fastidiosa M12]
          Length = 443

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 31/246 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP------SGSGKSCLAN 82
            F+       + D+ +   + + A          P        P      +G GK+ L  
Sbjct: 102 PFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRT--HNPLLLYGGTGLGKTHLMF 159

Query: 83  IWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122
              +  R                FS + ++L    +D           +L++DI      
Sbjct: 160 AAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGK 219

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           D    + FH  N++      +++T   +P       P L SRL     V I  PD +   
Sbjct: 220 DRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRA 279

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++    +R   I  ++A  I ++M  ++   E  ++ +   A   G  +T   + E L
Sbjct: 280 AIVLAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETL 339

Query: 240 KETQQC 245
           ++  + 
Sbjct: 340 RDLLRA 345


>gi|270291828|ref|ZP_06198043.1| replication initiation protein DnaA [Streptococcus sp. M143]
 gi|270279356|gb|EFA25198.1| replication initiation protein DnaA [Streptococcus sp. M143]
          Length = 453

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 78/239 (32%), Gaps = 30/239 (12%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
               + D+ +           A+ + +         + + G  G GK+ L N   ++   
Sbjct: 116 KEKYTFDNFIQGDGNIWAKSAALAVSEDLAL-TYNPLFIYGGPGLGKTHLLNAIGNEILK 174

Query: 88  ---SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDIDLLDF----NDTQL 126
                  ++      ++  L                +   +L++DI  L         + 
Sbjct: 175 NIPEARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEF 234

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N++H     +++T+   P         L +R        I+ PD +    ++    
Sbjct: 235 FNTFNALHSNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKT 294

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
                        Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  +Q
Sbjct: 295 EHLDYNFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353


>gi|313669121|ref|YP_004049405.1| chromosomal replication initiator protein [Neisseria lactamica
           ST-640]
 gi|313006583|emb|CBN88048.1| putative chromosomal replication initiator protein [Neisseria
           lactamica 020-06]
          Length = 523

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 27/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94
            + D L+       A     +    P +      L G +G GK+ L     ++    R  
Sbjct: 191 YTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGSTGLGKTHLVQAVGNELLKNRPD 250

Query: 95  NIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131
              + + S                            ++++DI  +   D    + F++ N
Sbjct: 251 AKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYN 310

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
             H     L++T    P         L SR      +++  P+ +    ++ K      I
Sbjct: 311 HFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAILQKKAEAAGI 370

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLKE 241
            I+ + A +I   +  ++   E   +++   +       I   LA   L++
Sbjct: 371 SIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLARTALQD 421


>gi|332638152|ref|ZP_08417015.1| chromosomal replication initiation protein [Weissella cibaria KACC
           11862]
          Length = 470

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 74/239 (30%), Gaps = 34/239 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
                 +  +      +A  +  +    P      +++ G  G GK+ L     +K    
Sbjct: 134 NPEFRFETFVSSDENREAYAVAQAVADNPGTQWNPLLIYGGVGLGKTHLMQAIGNKVLEN 193

Query: 88  ---------SRSTRFSNIAKSLDSILIDTRK---------PVLLEDIDLLDFND---TQL 126
                    +     ++  ++L     +T            +L++D+  L   +    + 
Sbjct: 194 NPNAKVKFITTEDFINDFTEALRRGQKETEAFKREYRSTDLLLVDDVQFLAGKEKIQEEF 253

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N+I + +  +++T+   P         L +R        I+ PD      ++    
Sbjct: 254 FNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILRNKS 313

Query: 187 ADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
               + I   +   I   ++   R L      V      A      +T   A ++L+  
Sbjct: 314 DQENLNIPNDVIDEIAAAVDTNVRDLEGVFNQVAGKLRFASQ---PVTVDTARDILETM 369


>gi|1353854|gb|AAC15822.1| DnaA [Prochlorococcus marinus]
          Length = 461

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 29/243 (11%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW 84
           L          +R   +V      A     +    P R    + + G  G GK+ L    
Sbjct: 119 LPL-LNLRYVFNR--FVVGPNSRMAHAAAMAVAESPGREFNPLFICGGVGLGKTHLMQAI 175

Query: 85  S------DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND- 123
                  D      + +     + +++                   +L++DI  ++  + 
Sbjct: 176 GHYRLEIDPGAKVSYVSTETFTNDLILAIRQDRMQAFRDRYRAADLILVDDIQFIEGKEY 235

Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + FH  N++H   S +++ +   P         L SR     +  +  PD +    +
Sbjct: 236 TQEEFFHTFNALHDAGSQIVLASDRPPSQIPRLQERLMSRFSMGLIADVQAPDLETRMAI 295

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + K     ++ + + L  +I  R   ++   E  + +    A   G+ +T    A +L  
Sbjct: 296 LQKKAEHERVGLPRDLIQFIAGRFTSNIRELEGALTRAIAFASITGLPMTVDSIAPMLDP 355

Query: 242 TQQ 244
             Q
Sbjct: 356 NGQ 358


>gi|319940207|ref|ZP_08014560.1| chromosomal replication initiator protein dnaA [Streptococcus
           anginosus 1_2_62CV]
 gi|319810678|gb|EFW07008.1| chromosomal replication initiator protein dnaA [Streptococcus
           anginosus 1_2_62CV]
          Length = 447

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 78/242 (32%), Gaps = 36/242 (14%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
               + D+ +           A+ + ++  +     + + G  G GK+ L N   ++   
Sbjct: 110 KAKYTFDNFVQGDGNVWALSAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAIGNQILE 168

Query: 91  TRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQL 126
                  K + +                        +   +L++DI  L         + 
Sbjct: 169 NIPDARVKYIPAETFINDFLEHLRLGEMESFKRTYRSLDLLLIDDIQSLGGKKVSTQEEF 228

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N++H  +  +++T+   P         L +R K      I+ PD +    ++    
Sbjct: 229 FNTFNALHGDNKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIAILRNKI 288

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG----MGITRSLAAEVLKET 242
                        Y+  + + ++   E  ++ +   +L         IT   AAE ++  
Sbjct: 289 EGLDYIFPNDTLEYLAGQFDSNVRDLEGALNDI---SLMARVKNLKEITIDAAAEAIRAR 345

Query: 243 QQ 244
           +Q
Sbjct: 346 KQ 347


>gi|15836606|ref|NP_297294.1| chromosomal replication initiation protein [Xylella fastidiosa
           9a5c]
 gi|14194685|sp|Q9PHE3|DNAA_XYLFA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|9104761|gb|AAF82814.1|AE003855_1 chromosomal replication initiator [Xylella fastidiosa 9a5c]
          Length = 439

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 31/246 (12%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP------SGSGKSCLAN 82
            F+       + D+ +   + + A          P        P      +G GK+ L  
Sbjct: 98  PFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRT--HNPLLLYGGTGLGKTHLMF 155

Query: 83  IWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122
              +  R                FS + ++L    +D           +L++DI      
Sbjct: 156 AAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGK 215

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           D    + FH  N++      +++T   +P       P L SRL     V I  PD +   
Sbjct: 216 DRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRA 275

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            +++    +R   I  ++A  I ++M  ++   E  ++ +   A   G  +T   + E L
Sbjct: 276 AIVLAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETL 335

Query: 240 KETQQC 245
           ++  + 
Sbjct: 336 RDLLRA 341


>gi|307298971|ref|ZP_07578773.1| chromosomal replication initiator protein DnaA [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915396|gb|EFN45781.1| chromosomal replication initiator protein DnaA [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 447

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 28/233 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSRST 91
               +  + +V S  +      +D   + P +     + G  G GK+ L    + ++ S 
Sbjct: 105 NPEYTFSNFVVGSENKALYEVALDVTQN-PGKYNPFFVYGGVGLGKTHLLQAIAQETMSN 163

Query: 92  ---------------------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127
                                   N  +            +L++DI  L        + F
Sbjct: 164 FPDKKVLYITSEQFMNDMIQSIKENNIQKFRDHYRKKSDILLIDDIQFLIGKKGVQNEFF 223

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N +H     L++ +   P         L SR +   ++ I  P       +  ++  
Sbjct: 224 HSFNELHDSGKQLIICSDRNPEELETFHSRLKSRFQMGMLMSIQEPRPSTRFHIAKQLAQ 283

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              + +   +A  +   ++ +L      + K+   +      I  SLA ++L+
Sbjct: 284 RESVSLPDDVAKVLADNIDGNLRRLRGAIIKLIVHSSVFRSQIDLSLATQILQ 336


>gi|309379508|emb|CBX21874.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 551

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 27/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94
            + D L+       A     +    P +      L G +G GK+ L     ++    R  
Sbjct: 219 YTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGSTGLGKTHLVQAVGNELLKNRPD 278

Query: 95  NIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131
              + + S                            ++++DI  +   D    + F++ N
Sbjct: 279 AKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYN 338

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
             H     L++T    P         L SR      +++  P+ +    ++ K      I
Sbjct: 339 HFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAILQKKAEAAGI 398

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLKE 241
            I+ + A +I   +  ++   E   +++   +       I   LA   L++
Sbjct: 399 SIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLARTALQD 449


>gi|85374940|ref|YP_459002.1| chromosomal replication initiation protein [Erythrobacter litoralis
           HTCC2594]
 gi|84788023|gb|ABC64205.1| chromosomal replication initiator protein [Erythrobacter litoralis
           HTCC2594]
          Length = 488

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 77/234 (32%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--- 88
              ++    +       A        +        + +   +G GK+ L +    +    
Sbjct: 153 DASLTFAAFITGETNILACNAAQRMAATEQPQFSPLYIKAGTGQGKTHLLHAIGHQYLAS 212

Query: 89  --RSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLL---DFNDTQLFH 128
             R+  F   A+      +   K                +L++DI  +        +L +
Sbjct: 213 HPRARIFYCSAERFMVEFVQALKANQMIEFKARLRSFDLLLVDDIQFIIGKASAQEELLY 272

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            I+ +      L+  A   P +     P L SRL    V  I   D +  +K++      
Sbjct: 273 TIDHLLAEGKRLVFAADRAPQALDGVEPRLLSRLSMGLVADIQAADIELRKKILESKLTR 332

Query: 189 -RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              + + + +  ++ + + R++      ++K+   A   G  ++  LA E L +
Sbjct: 333 FAPLDVPEDVIEFLARTITRNVRELVGGLNKLIAYAQLTGQVVSLQLAEEQLTD 386


>gi|145641119|ref|ZP_01796700.1| hypothetical protein CGSHiR3021_08616 [Haemophilus influenzae
           R3021]
 gi|145274280|gb|EDK14145.1| hypothetical protein CGSHiR3021_08616 [Haemophilus influenzae
           22.4-21]
          Length = 113

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 13/108 (12%)

Query: 71  GPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121
           G  GSGK+ L   +S++     R+  +  ++KS          ++ ++ V L+D+  +  
Sbjct: 2   GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 61

Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAA 165
           ND     +F + N I     +LL+ +A   P +  V LPDL SRL   
Sbjct: 62  NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWG 109


>gi|269214503|ref|ZP_05986706.2| replication initiation protein DnaA [Neisseria lactamica ATCC
           23970]
 gi|269209657|gb|EEZ76112.1| replication initiation protein DnaA [Neisseria lactamica ATCC
           23970]
          Length = 559

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 27/231 (11%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94
            + D L+       A     +    P +      L G +G GK+ L     ++    R  
Sbjct: 227 YTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGSTGLGKTHLVQAVGNELLKNRPD 286

Query: 95  NIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131
              + + S                            ++++DI  +   D    + F++ N
Sbjct: 287 AKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYN 346

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
             H     L++T    P         L SR      +++  P+ +    ++ K      I
Sbjct: 347 HFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAILQKKAEAAGI 406

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLKE 241
            I+ + A +I   +  ++   E   +++   +       I   LA   L++
Sbjct: 407 SIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLARTALQD 457


>gi|160914813|ref|ZP_02077027.1| hypothetical protein EUBDOL_00820 [Eubacterium dolichum DSM 3991]
 gi|158433353|gb|EDP11642.1| hypothetical protein EUBDOL_00820 [Eubacterium dolichum DSM 3991]
          Length = 459

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--------- 82
               + D  +V     +A     S   +P +    + + G SG GK+ L +         
Sbjct: 121 NPEYTFDSFVVGKNNREAHAASLSACYYPGKFNNPLFIFGNSGLGKTHLLHAIGNYIKEN 180

Query: 83  --------IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLL--DFNDTQLFHI 129
                   I+S+   +     +       + +   +   +L++DI  L    +    F++
Sbjct: 181 RPEDKVLYIYSEDFVTLLIEAMKNKNVEEVKEKICSADYLLIDDIQRLKQSTSQELFFNM 240

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N + + +  +++T+   P         L SR  +   V +  P+ +  + ++ K    R
Sbjct: 241 YNKLIRDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETAKAILQKKIEGR 300

Query: 190 Q--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKE 241
              I I+ ++  Y+  R    +   E  ++++   + L     I    A E+ KE
Sbjct: 301 NEEILIEDEVLDYLATRFASDVRKLEGALNELFFKSILYNPDTIDLKFAKEIFKE 355


>gi|323699689|ref|ZP_08111601.1| Chromosomal replication initiator DnaA domain [Desulfovibrio sp.
           ND132]
 gi|323459621|gb|EGB15486.1| Chromosomal replication initiator DnaA domain [Desulfovibrio
           desulfuricans ND132]
          Length = 432

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 33/247 (13%)

Query: 3   LMKEDYSFFVPDKQKNDQPKNKEEQLF-----FSFPRCLGISRDDLLVHSAIEQAVRLID 57
            +   Y     D +  D+P+    Q+        FP     + D  L++      +    
Sbjct: 64  FLGNGYVVSYKDSETQDRPRG--VQVSDVVKRIDFPFGQEFTFDTFLINKKNYFPIASAK 121

Query: 58  SWPSWPSRVV---ILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSIL----- 104
                   +    I+ GP GSGK+ L       I      ST F    + L+S+      
Sbjct: 122 EVAKQSGSLFNPFIICGPGGSGKTHLLKSVGNEIAKKHDYSTIFMGSLEELNSLYSIRFK 181

Query: 105 ---------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
                    +     + ++D   +  +     +L +I N  +     +++  R    S+ 
Sbjct: 182 GDPFKARNHLFDYNFLFIDDFHKIKEHPHFQQELVNIFNHFYDNKKQMVLACREKVTSYD 241

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
               +L SRL    +V +  PD +     I +    +++ + K+    + QR      + 
Sbjct: 242 FLDDNLQSRLGWGLIVTLKEPDLEIRVGYIQRQARAKRLSLTKEQVLTLAQRFT-DFRYL 300

Query: 213 EKLVDKM 219
           + ++ K+
Sbjct: 301 QGILLKL 307


>gi|326405598|gb|ADZ62669.1| chromosomal replication initiator protein [Lactococcus lactis
           subsp. lactis CV56]
          Length = 455

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 87/245 (35%), Gaps = 29/245 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + ++ +           A+ + D         + + G +G GK+ L +  
Sbjct: 113 PLVSGLNEKYNFENFVQGPGNRWTLAAAIAVADKPGD-TYNPLFIYGGAGLGKTHLMHAI 171

Query: 85  SDK-----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL------------------DF 121
            ++       +      +++  +  ++  +   +E+ +                    + 
Sbjct: 172 GNQILTDNPTARIKYVSSENFVNDYVNATRKNQMENFENTYRNLDLLLLDDVQFFSDKEG 231

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + F+  N+++   S +++T+   P         L SR        I+ PD +    +
Sbjct: 232 TKNEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMAI 291

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLK 240
           ++      ++    +  +YI  +++ ++   E  +++++ +A + G+  +    A++ L+
Sbjct: 292 LLIKSESSRLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGIAVVDIETASQALR 351

Query: 241 ETQQC 245
             +  
Sbjct: 352 SLKNA 356


>gi|163867415|ref|YP_001608612.1| chromosomal replication initiation protein [Bartonella tribocorum
           CIP 105476]
 gi|161017059|emb|CAK00617.1| chromosomal replication initiator protein DnaA [Bartonella
           tribocorum CIP 105476]
          Length = 523

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 64/207 (30%), Gaps = 32/207 (15%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANI 83
            F  P     + +  +  ++   A+    S        +      +    G GK+ L   
Sbjct: 174 VFGSPLDSRYTFESFVEGASNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQA 233

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127
            +  +     S     L +     R    + D            IDLL  +D Q      
Sbjct: 234 IAASALKRLTSARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 293

Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                 H++N +      +++ A   P         + SRL+    ++I  PD +   ++
Sbjct: 294 IQHEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVSLEIEAPDYEMRLQM 353

Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203
           + +     Q     I I   +  YI +
Sbjct: 354 LRQRLKVAQQDDGMISISDDVLEYIAK 380


>gi|15671983|ref|NP_266157.1| chromosomal replication initiation protein [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281490499|ref|YP_003352479.1| chromosomal replication initiator protein DnaA [Lactococcus lactis
           subsp. lactis KF147]
 gi|14194668|sp|Q9CJJ2|DNAA_LACLA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|12722836|gb|AAK04099.1|AE006239_1 replication initiation protein DnaA [Lactococcus lactis subsp.
           lactis Il1403]
 gi|281374317|gb|ADA63850.1| Chromosomal replication initiator protein DnaA [Lactococcus lactis
           subsp. lactis KF147]
          Length = 455

 Score = 86.4 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 87/245 (35%), Gaps = 29/245 (11%)

Query: 29  FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                     + ++ +           A+ + D         + + G +G GK+ L +  
Sbjct: 113 PLVSGLNEKYNFENFVQGPGNRWTLAAAIAVADKPGD-TYNPLFIYGGAGLGKTHLMHAI 171

Query: 85  SDK-----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL------------------DF 121
            ++       +      +++  +  ++  +   +E+ +                    + 
Sbjct: 172 GNQILTDNPTARIKYVSSENFVNDYVNATRKNQMENFENTYRNLDLLLLDDVQFFSDKEG 231

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              + F+  N+++   S +++T+   P         L SR        I+ PD +    +
Sbjct: 232 TKNEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMAI 291

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLK 240
           ++      ++    +  +YI  +++ ++   E  +++++ +A + G+  +    A++ L+
Sbjct: 292 LLIKSESSRLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGIAVVDIETASQALR 351

Query: 241 ETQQC 245
             +  
Sbjct: 352 SLKNA 356


>gi|198282149|ref|YP_002218470.1| chromosomal replication initiator protein DnaA [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665582|ref|YP_002427662.1| chromosomal replication initiator protein DnaA [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198246670|gb|ACH82263.1| chromosomal replication initiator protein DnaA [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517795|gb|ACK78381.1| chromosomal replication initiator protein DnaA [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 452

 Score = 86.4 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 79/238 (33%), Gaps = 34/238 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--SDKSR 89
             G S    +   + + AV         P +    + + G  G GK+ L      +   R
Sbjct: 118 NPGFSFQSYVEGKSNQLAVAAARQVAQNPGKSYNPLYIYGGVGLGKTHLMQAVGNAILQR 177

Query: 90  STRFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFND---TQLFH 128
           +     +  S +  ++D                      +L++DI      D    + FH
Sbjct: 178 NADAKVLYVSSEGFIMDMVRSLQHNTINDFKQRYRKLDALLIDDIQFFAGKDRTQEEFFH 237

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++      +++T   +P         L SR      V I   D +    +++    +
Sbjct: 238 TFNALFDGGRQIIITCDRYPKEVDRLEERLQSRFGWGLTVAIQPHDLETRMAIVLCKAEE 297

Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + +++A +I +++    R L     ++V  ++              A E L++ 
Sbjct: 298 SGVDLPEEVAFFIAEKIRSHVRELEGALRRVVAHVNF----THKPYNLDTAREALRDL 351


>gi|298529136|ref|ZP_07016539.1| chromosomal replication initiator protein DnaA [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510572|gb|EFI34475.1| chromosomal replication initiator protein DnaA [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 449

 Score = 86.4 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 85/237 (35%), Gaps = 28/237 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCL------------ 80
               S  D +V  + E A     S+      S  + L   +G GK+ L            
Sbjct: 114 RFRYSFQDFVVGPSNELAFVASRSFCREQVSSDQLFLCSSTGLGKTHLVQSMGNNLAGSS 173

Query: 81  -------ANIWSDKSRSTRFSNIA----KSLDSILIDTRKPVLLEDIDLLDFNDT---QL 126
                  A + +++        I     +   +   D    ++LEDI      +    + 
Sbjct: 174 NKEALRVAYLTAEEFACQLIQAIKSKQVERFKARYRDQIDILMLEDIHFFQGKEKIQGEF 233

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
              INS+      +++++   P        +L SRL    +  I  PD    ++++ +  
Sbjct: 234 LSTINSLQGQGKKVVLSSSFLPKELNDLDSNLVSRLCRGFMAVIDKPDLGTRQEILRQKA 293

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +  QI + ++++  + +R++  +   E  +  +   A      IT  +A EVLK   
Sbjct: 294 SSLQISLPQEVSHLLAERIQTDIRQLESCLSNLVFKARMLKERITLEMALEVLKNYD 350


>gi|322375216|ref|ZP_08049730.1| replication initiation protein DnaA [Streptococcus sp. C300]
 gi|321280716|gb|EFX57755.1| replication initiation protein DnaA [Streptococcus sp. C300]
          Length = 453

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D+ +       AV     +    +     + + G  G GK+ L N   ++    
Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175

Query: 92  RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127
                 K + +                        +   +L++DI  L         + F
Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +  N++H     +++T+   P         L +R        I+ PD +    ++     
Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKETQQ 244
                       Y+  + + ++   E  ++ +  +A +     IT  +AAE ++  +Q
Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKNIKDITIDIAAEAIRARKQ 353


>gi|291276244|ref|YP_003516016.1| chromosomal replication initiator protein [Helicobacter mustelae
           12198]
 gi|290963438|emb|CBG39267.1| chromosomal replication initiator protein [Helicobacter mustelae
           12198]
          Length = 429

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 84/234 (35%), Gaps = 24/234 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + +  +   + + A  +   I          V+  G +G GK+ L N   +K    
Sbjct: 99  NASYTFETFIQGDSNKFAYEIAKKICEKQGKAYNPVLFYGGTGLGKTHLLNAIGNKVIEK 158

Query: 92  RFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFN---DTQLFHII 130
             S I  + +  L D  +                   +L++DI           + FH  
Sbjct: 159 NKSVIYITSEQFLNDYSERLKSNTMEKFREKYRNCDYLLIDDIQFFAGKIQIQEEFFHTF 218

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N +H  +  +++TA             L SR +      I  P  +   ++I +      
Sbjct: 219 NELHLKNKQIVITADKSLKQILGLEERLKSRCEWGITADIQPPGIETKIEIIKQKCIIHH 278

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + I++ +   +   +  ++   E ++ K++ L L  G  IT S+A   +K+ ++
Sbjct: 279 VEINQDIIECLAYNIGGNIRQIEGIILKLNALPLLIGQPITLSMAQNAIKDIRK 332


>gi|328541625|ref|YP_004301734.1| Chromosomal replication initiator protein dnaA [polymorphum gilvum
           SL003B-26A1]
 gi|326411377|gb|ADZ68440.1| Chromosomal replication initiator protein dnaA [Polymorphum gilvum
           SL003B-26A1]
          Length = 491

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 28/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + +  +   +   A+       S        + L    G GK+ L    + K+R++
Sbjct: 154 DPKYTFETFVEGESNGLALAAAKQVASGGAVTFNPLYLHAAVGLGKTHLMQAVATKARAS 213

Query: 92  RFSNIAKSLDS------ILIDTRKPVL----LEDIDLLDFNDTQLFH----------IIN 131
               +  + +         +  +  +     L  IDLL  +D Q  H           +N
Sbjct: 214 GRKVLYLTAEHFMYRFVAALKAQSALAFKETLRTIDLLLIDDMQFLHGKQVQQEFCHTLN 273

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--- 188
           ++      +++ A   P         + SRL    VV I+ PD      ++    A    
Sbjct: 274 ALIDGARQVIVAADRAPSELDTLDDRVRSRLSGGLVVGIAEPDFALRRNILGARVATLKK 333

Query: 189 --RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                 +   +  Y+ + +  S    E  ++++          +T+ +A   L++  + 
Sbjct: 334 SYPNFTVPDGVLDYVARHVVSSGRDLEGALNRLVAHNQLTNQPVTQDMAELTLRDLIRT 392


>gi|262039497|ref|ZP_06012799.1| chromosomal replication initiator protein DnaA [Leptotrichia
           goodfellowii F0264]
 gi|261746478|gb|EEY34015.1| chromosomal replication initiator protein DnaA [Leptotrichia
           goodfellowii F0264]
          Length = 453

 Score = 86.0 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 78/237 (32%), Gaps = 33/237 (13%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-------------- 83
           D+ +V      A     +     + V   + + G SG GK+ L                 
Sbjct: 120 DNFIVGDNSRMAYNACLAVLENEAPVYNPLFIYGGSGLGKTHLMQAVGNAILERNPEKRV 179

Query: 84  -------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID-------LLDFN-DTQLFH 128
                  +S++  +       K+           +LL+DI            + + + FH
Sbjct: 180 LYTTTEEFSNEFIAAIKEGRIKNFRDTF-RNLDVLLLDDIQFFERIFGRGMGDTEEEFFH 238

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N + +    ++M +  +P         L SR  +    +I  P  +  + ++  +   
Sbjct: 239 TFNKLQESGKQIIMISDRYPQDIKNLSKRLESRFISGLSTEILEPGYETRKAILENIVEI 298

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           + I ID  +  YI + +  ++   E ++  ++  A      IT     + L    + 
Sbjct: 299 KNIEIDDNILEYIAESVSSNVRELEGILTLINARAKLLNEKITLQQVQDELSTRMRS 355


>gi|192288434|ref|YP_001989039.1| chromosomal replication initiation protein [Rhodopseudomonas
           palustris TIE-1]
 gi|226735837|sp|B3QJZ9|DNAA_RHOPT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|192282183|gb|ACE98563.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas
           palustris TIE-1]
          Length = 472

 Score = 86.0 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 80/245 (32%), Gaps = 32/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +V  +   A                    + +    G GK+ L     W
Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 188

Query: 85  SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125
           +  + + R             F    K+  S+     +     ++++D+  L       +
Sbjct: 189 AGNAGTERKVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAE 248

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H +N++      +++ A   P         + SRL    VV+++   +D    ++   
Sbjct: 249 FCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMAPLGEDLRLGILRSR 308

Query: 186 -FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             A R       + + +  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 309 VVAARTHHASFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKLNNQPVTLEMAEHEVR 368

Query: 241 ETQQC 245
           +  + 
Sbjct: 369 DLIRP 373


>gi|16752614|ref|NP_444878.1| chromosomal replication initiation protein [Chlamydophila
           pneumoniae AR39]
 gi|7189257|gb|AAF38184.1| chromosomal replication initiator protein DnaA [Chlamydophila
           pneumoniae AR39]
          Length = 467

 Score = 86.0 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 88/243 (36%), Gaps = 35/243 (14%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGKSCLAN---- 82
           F     L    D+ +   + +    A   I   P      + + G  G GK+ L +    
Sbjct: 129 FELKLNLSYRFDNFIEGPSNQFVKSAAVGIAGKPGRSYNPLFIHGGVGLGKTHLLHAVGH 188

Query: 83  ----------IWSDKSRSTR----FSNIAKSLDSI--LIDTRKPVLLEDI----DLLDFN 122
                     I    + +      +   +KS+D +     +   +L++DI    +  +F 
Sbjct: 189 YVREHHKNLRIHCITTEAFINDLVYHLKSKSVDKMKNFYRSLDLLLVDDIQFLQNRQNFE 248

Query: 123 DT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +        +IN   Q    +++T+   P    +    + +R++   V  + +PD +   
Sbjct: 249 EEFCNTFETLINLSKQ----IVITSDKPPSQLKLS-ERIIARMEWGLVAHVGIPDLETRV 303

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            ++      + + I  ++A YI   +  ++   E  ++K+       G  +T +   E L
Sbjct: 304 AILQHKAEQKGLLIPNEMAFYIADHIYGNVRQLEGAINKLTAYCRLFGKSLTETTVRETL 363

Query: 240 KET 242
           KE 
Sbjct: 364 KEL 366


>gi|15618339|ref|NP_224624.1| chromosomal replication initiation protein [Chlamydophila
           pneumoniae CWL029]
 gi|15835957|ref|NP_300481.1| chromosomal replication initiation protein [Chlamydophila
           pneumoniae J138]
 gi|33241773|ref|NP_876714.1| chromosomal replication initiation protein [Chlamydophila
           pneumoniae TW-183]
 gi|14194706|sp|Q9Z8B9|DNAA2_CHLPN RecName: Full=Chromosomal replication initiator protein DnaA 2
 gi|4376705|gb|AAD18568.1| Replication Initiation Factor [Chlamydophila pneumoniae CWL029]
 gi|8978796|dbj|BAA98632.1| replication initiation factor [Chlamydophila pneumoniae J138]
 gi|33236282|gb|AAP98371.1| replication initiation protein dnaA [Chlamydophila pneumoniae
           TW-183]
 gi|269303303|gb|ACZ33403.1| chromosomal replication initiator protein DnaA [Chlamydophila
           pneumoniae LPCoLN]
          Length = 450

 Score = 86.0 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 88/243 (36%), Gaps = 35/243 (14%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGKSCLAN---- 82
           F     L    D+ +   + +    A   I   P      + + G  G GK+ L +    
Sbjct: 112 FELKLNLSYRFDNFIEGPSNQFVKSAAVGIAGKPGRSYNPLFIHGGVGLGKTHLLHAVGH 171

Query: 83  ----------IWSDKSRSTR----FSNIAKSLDSI--LIDTRKPVLLEDI----DLLDFN 122
                     I    + +      +   +KS+D +     +   +L++DI    +  +F 
Sbjct: 172 YVREHHKNLRIHCITTEAFINDLVYHLKSKSVDKMKNFYRSLDLLLVDDIQFLQNRQNFE 231

Query: 123 DT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +        +IN   Q    +++T+   P    +    + +R++   V  + +PD +   
Sbjct: 232 EEFCNTFETLINLSKQ----IVITSDKPPSQLKLS-ERIIARMEWGLVAHVGIPDLETRV 286

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
            ++      + + I  ++A YI   +  ++   E  ++K+       G  +T +   E L
Sbjct: 287 AILQHKAEQKGLLIPNEMAFYIADHIYGNVRQLEGAINKLTAYCRLFGKSLTETTVRETL 346

Query: 240 KET 242
           KE 
Sbjct: 347 KEL 349


>gi|149173671|ref|ZP_01852300.1| chromosomal replication initiation protein [Planctomyces maris DSM
           8797]
 gi|148847201|gb|EDL61535.1| chromosomal replication initiation protein [Planctomyces maris DSM
           8797]
          Length = 505

 Score = 86.0 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 76/228 (33%), Gaps = 26/228 (11%)

Query: 43  LLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWSDKSR---------- 89
            +   + + A          P      + + G  G GK+ L   +  K R          
Sbjct: 169 FITGKSNQLAYMATQQASEQPGALYNPLFIHGGVGLGKTHLLEGFYRKIRQQYPSLQVVF 228

Query: 90  --STRFSNIAKSLDSILIDTR--------KPVLLEDIDLLDFN---DTQLFHIINSIHQY 136
             +  F N                       ++++DID  +       +L H I  +  +
Sbjct: 229 LTAESFGNYFSKALQERSLPGFRQRFRNVDVLIIDDIDFFESKHNFQEELLHTIKHLESH 288

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L+ ++   P        +L +R  +  V ++  P+ +   ++  +     +  I   
Sbjct: 289 GRQLIFSSDRHPRLLTKMSEELTTRFLSGLVCRVESPETELRLQIARQRALQLKTPITDG 348

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
              Y+ +R   ++   E  ++ +    +     IT ++A +VL + ++
Sbjct: 349 ALEYVARRFSHNVRELEGAMNCLQTWHVMTKQKITTTMARQVLADLER 396


>gi|118590460|ref|ZP_01547862.1| chromosomal replication initiation protein [Stappia aggregata IAM
           12614]
 gi|118436923|gb|EAV43562.1| chromosomal replication initiation protein [Stappia aggregata IAM
           12614]
          Length = 491

 Score = 86.0 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 86/260 (33%), Gaps = 32/260 (12%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILV 70
            +  +D  ++  +            + +  +   +   A+       +        + L 
Sbjct: 137 GETSSDNARDVLQGAALD----PKYTFETFVEGESNNLALAAARQVAAGGAVTFNPLYLH 192

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS------ILIDTRKPVL----LEDIDLLD 120
              G GK+ L    + K+R++    +  + +         + ++  +     L  IDLL 
Sbjct: 193 ASVGLGKTHLMQAVAAKARASGRKVLYLTAEHFMYKFVAALKSQSALAFKENLRTIDLLL 252

Query: 121 FNDTQLFH----------IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            +D Q  H           +N++      +++ A   P         + SRL    VV I
Sbjct: 253 IDDMQFLHGKQVQQEFCHTLNALIDGARQVIVAADRAPSELDTLDDRVRSRLSGGLVVGI 312

Query: 171 SLPDDDFLEKVIVKM--FADR---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             PD      ++      A R   Q  +   +  Y+ + +  S    E  ++++      
Sbjct: 313 QEPDFALRRNILATRVDTARRNYPQFDVPDSVLDYVARHVASSGRDLEGALNRLIAHNQL 372

Query: 226 RGMGITRSLAAEVLKETQQC 245
               IT+ +A   L++  + 
Sbjct: 373 TNQPITQEMAEMTLRDLVRS 392


>gi|167041926|gb|ABZ06664.1| putative bacterial DnaA protein [uncultured marine microorganism
           HF4000_137B17]
          Length = 418

 Score = 85.6 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 72/211 (34%), Gaps = 31/211 (14%)

Query: 39  SRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANIW------------ 84
           S D+ +V  + E A          S     + +    G GK+ L N              
Sbjct: 87  SFDNFMVGESNELAYTAARKVCNQSSHYNPLFIYSVVGMGKTHLLNAIGLDIENSKQIMF 146

Query: 85  --SDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFHIINSIHQY 136
             +++       +I  +      D        +++DI  +   +    + FH  N++ + 
Sbjct: 147 ISAERFMYHFIRSIKSNDMVKFKDFFRKANVFIIDDIQFVAGKEAMQEEFFHTFNALMER 206

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD------RQ 190
            S +++ +   P +       + SRL    V+ I  PD +   K++   F D        
Sbjct: 207 GSQIVVASDRSPSNLDRVQGRIKSRLSGGLVIDIQPPDLNLRIKILRSKFEDIKKNFNEN 266

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
             ++ ++  ++   +        ++V  ++ 
Sbjct: 267 YNLNDEVFKFLATEIT---SSIREMVGALNR 294


>gi|39933081|ref|NP_945357.1| chromosomal replication initiation protein [Rhodopseudomonas
           palustris CGA009]
 gi|61212615|sp|Q6NDV3|DNAA_RHOPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|39652706|emb|CAE25445.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas
           palustris CGA009]
          Length = 472

 Score = 85.6 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 80/245 (32%), Gaps = 32/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +V  +   A                    + +    G GK+ L     W
Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 188

Query: 85  SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125
           +  + + R             F    K+  S+     +     ++++D+  L       +
Sbjct: 189 AGNAGTERKVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAE 248

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H +N++      +++ A   P         + SRL    VV+++   +D    ++   
Sbjct: 249 FCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMAPLGEDLRLGILRSR 308

Query: 186 -FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             A R       + + +  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 309 VVAARTHHASFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKLNNQPVTLEMAEHEVR 368

Query: 241 ETQQC 245
           +  + 
Sbjct: 369 DLIRP 373


>gi|289677081|ref|ZP_06497971.1| DNA replication initiation factor [Pseudomonas syringae pv.
           syringae FF5]
          Length = 83

 Score = 85.6 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 36/81 (44%)

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SRL  A V ++    D+   + +    + R + +   +  +I+ R  RS+    +L+++
Sbjct: 1   KSRLTMALVFQMRGLSDEDKLRALQLRASRRGLHLTDDVGHFILTRGTRSMSALFELLER 60

Query: 219 MDNLALSRGMGITRSLAAEVL 239
           +D  +L     +T     E L
Sbjct: 61  LDQASLQEKRKLTIPFLKETL 81


>gi|325282256|ref|YP_004254797.1| Chromosomal replication initiator protein dnaA [Deinococcus
           proteolyticus MRP]
 gi|324314065|gb|ADY25180.1| Chromosomal replication initiator protein dnaA [Deinococcus
           proteolyticus MRP]
          Length = 494

 Score = 85.6 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 91/237 (38%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----WSDK 87
               + ++ +V      A     +    P +    + + G  G GK+ L +      ++K
Sbjct: 153 NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLFIYGDVGLGKTHLMHAVGHYLAEK 212

Query: 88  SRSTRFSNIA-KSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
               R + ++ +S  + LI++ +                +L++DI  L   +    + FH
Sbjct: 213 YPEKRIAYVSTESFTNELINSIRDDKTTQFRDRYRSVDLLLVDDIQFLARKERTQEEFFH 272

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++    +++++   P         L SR +   +  I  P+ +    ++      
Sbjct: 273 TFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEFETRVAILKMNAEQ 332

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             I I +++   I +++  ++   E  + ++   +    +  +R++A++ L      
Sbjct: 333 ANINIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPFSRAVASKALSNVFAP 389


>gi|316931397|ref|YP_004106379.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas
           palustris DX-1]
 gi|315599111|gb|ADU41646.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas
           palustris DX-1]
          Length = 469

 Score = 85.2 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 80/245 (32%), Gaps = 32/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +V  +   A                    + +    G GK+ L     W
Sbjct: 126 PLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 185

Query: 85  SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125
           +  + S R             F    K+  S+     +     ++++D+  L       +
Sbjct: 186 AGNAGSERKVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAE 245

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H +N++      +++ A   P         + SRL    VV+++   +D    ++   
Sbjct: 246 FCHTLNALIDAGRQVVVAADRPPSDLESLDERVRSRLAGGLVVEMAPLGEDLRLGILRSR 305

Query: 186 -FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             A R       + + +  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 306 VVAARAHHVSFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKLNNQPVTLEMAEHEVR 365

Query: 241 ETQQC 245
           +  + 
Sbjct: 366 DLIRP 370


>gi|148251627|ref|YP_001236212.1| chromosomal replication initiation protein [Bradyrhizobium sp.
           BTAi1]
 gi|166201861|sp|A5E812|DNAA_BRASB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|146403800|gb|ABQ32306.1| Chromosomal replication initiator protein [Bradyrhizobium sp.
           BTAi1]
          Length = 475

 Score = 85.2 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 77/245 (31%), Gaps = 32/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +V  A   A                    + +    G GK+ L     W
Sbjct: 132 PLDPRLTFASFVVGRANTLAHAAARQVADGRRGDPVMFNPLYIHAGVGLGKTHLLQAVTW 191

Query: 85  SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125
           +  +   R             F    KS  ++     +     ++++D+  L       +
Sbjct: 192 AGNAGGERKVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDVLVIDDLQFLQGKSTQAE 251

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK- 184
             H +N++      +++ A   P         + SRL    VV+++   +D    ++   
Sbjct: 252 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMATLGEDLRLGILKSR 311

Query: 185 ----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                       + + +  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 312 VAAARAHHASFDVPEPVLDYLARSITHNGRDLEGAINRLLAHSKLNNQPVTLDMAEREVR 371

Query: 241 ETQQC 245
           +  + 
Sbjct: 372 DLVRP 376


>gi|122912897|gb|ABM68012.1| DnaA [Epulopiscium sp. 'N.t. morphotype B']
          Length = 232

 Score = 85.2 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 73/190 (38%), Gaps = 23/190 (12%)

Query: 76  GKSCLANIWS-----------------DKSRSTRFSNIAKSLDSILIDTRKPV---LLED 115
           GK+ L    +                 +K  +   ++I    ++   +  + +   L++D
Sbjct: 2   GKTHLMQSIAHFTLKHHPNLKVLYTSTEKFTNELINSIRDDQNNAFRNKYRNIDILLIDD 61

Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           I  +   +    + FH  N++++ +  +++++   P         L SR +   +  +  
Sbjct: 62  IQFIAGKERTQEEFFHTFNTLYEANKQIIISSDRTPKEIEFLESRLRSRFEWGLIADLQP 121

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
           PD +    ++ K      I ID  +  +I + +  ++   E  ++++   +      I  
Sbjct: 122 PDLETRIAILKKKAEMENITIDSNVLQFIAETIISNIRELEGALNRIIAFSSLSNETINL 181

Query: 233 SLAAEVLKET 242
            L  E LK+T
Sbjct: 182 ELTEEALKDT 191


>gi|53804309|ref|YP_114074.1| DnaA domain-containing protein [Methylococcus capsulatus str. Bath]
 gi|53758070|gb|AAU92361.1| DnaA domain protein [Methylococcus capsulatus str. Bath]
          Length = 334

 Score = 85.2 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 84/228 (36%), Gaps = 29/228 (12%)

Query: 35  CLGISRDDLLVHSAIEQA-VRLIDSWPS-WPSRV-VILVGPSGSGKSCLANIWSD----- 86
                  + +   +  +A    +    +  P+ V +++ G +G GK+ L     +     
Sbjct: 7   NPSFRFSNFIEARSNNKAGTAALRVARNLGPASVPMVIWGAAGLGKTHLLQAIGNERLRL 66

Query: 87  --------KSRSTRFSNIAKSLDSILI-------DTRKPVLLEDIDLLDF---NDTQLFH 128
                   +S     +++A +L    +       ++   +L +D+  L        +L  
Sbjct: 67  NPAARIVYQSGDGFEADLAAALQQGAVAGFRSRYESADLLLFDDVQRLAGKVRAQAELVW 126

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + +++ +   S+++     P        DL +RL     V I  PD +    V+++    
Sbjct: 127 LFDALLESLRSIVLAGDRSPYDMTGVAGDLKTRLNLGLSVSIEPPDLETRAAVLMQKART 186

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
             I +  ++A ++ +R+   L   E+    +  LA      IT   AA
Sbjct: 187 WGIDLPPEVAFFLGRRIRTDLAELER---ALLRLAACARQPITLETAA 231


>gi|146337176|ref|YP_001202224.1| chromosomal replication initiation protein [Bradyrhizobium sp.
           ORS278]
 gi|166201862|sp|A4YJ98|DNAA_BRASO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|146189982|emb|CAL73974.1| Chromosomal replication initiator protein dnaA [Bradyrhizobium sp.
           ORS278]
          Length = 476

 Score = 85.2 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 77/245 (31%), Gaps = 32/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +V  A   A                    + +    G GK+ L     W
Sbjct: 133 PLDPRLTFASFVVGRANTLAHAAARQVADGRRGDPVMFNPLYIHAGVGLGKTHLLQAVTW 192

Query: 85  SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125
           +  +   R             F    KS  ++     +     ++++D+  L       +
Sbjct: 193 AGNAGGERKVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDVLVIDDLQFLQGKSTQAE 252

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK- 184
             H +N++      +++ A   P         + SRL    VV+++   +D    ++   
Sbjct: 253 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMATLGEDLRLGILKSR 312

Query: 185 ----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                       + + +  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 313 VAAARAHHASFDVPEAVLDYLARSITHNGRDLEGAINRLLAHSKLNNQPVTLDMAEREVR 372

Query: 241 ETQQC 245
           +  + 
Sbjct: 373 DLVRP 377


>gi|322392425|ref|ZP_08065885.1| DNA-directed DNA replication initiator protein [Streptococcus
           peroris ATCC 700780]
 gi|321144417|gb|EFX39818.1| DNA-directed DNA replication initiator protein [Streptococcus
           peroris ATCC 700780]
          Length = 452

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 79/236 (33%), Gaps = 30/236 (12%)

Query: 38  ISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87
            + D+ +           A+ + +         + + G  G GK+ L N   ++      
Sbjct: 118 YTFDNFVQGDGNIWAKSAALAVSEDLAL-TYNPLFIYGGPGLGKTHLLNAIGNEILKNIP 176

Query: 88  SRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDF----NDTQLFHI 129
           S   ++      ++  L   R                +L++DI  L         + F+ 
Sbjct: 177 SARVKYIPAESFINDFLDHLRLGEMEKFKKTYRNLDLLLIDDIQSLSGKKVATQEEFFNT 236

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N +H     +++T+   P         L +R        I+ PD +    ++     + 
Sbjct: 237 FNDLHNKQKQIVLTSDRSPKQLEGMEERLVTRFSWGLTQAITPPDFETRVAILQSKTENL 296

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
                     Y+  + + ++   E  ++ +  +A  +    IT  +AAE ++  +Q
Sbjct: 297 DYNFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKITDITIDIAAEAIRARKQ 352


>gi|330721534|gb|EGG99570.1| Chromosomal replication initiator protein DnaA [gamma
           proteobacterium IMCC2047]
          Length = 91

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
             V LPDL +RL +  V ++    D+   +++     ++ + +  + A YI+ R ERS+ 
Sbjct: 1   MAVQLPDLLTRLASCAVFQVKTLSDEGKVRLLCDRADEKGVELPVESAQYILNRSERSIG 60

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
              +++D++D  +LS G  +T     E ++
Sbjct: 61  RLLEILDRLDQSSLSAGRKLTIPFIKETMR 90


>gi|91974483|ref|YP_567142.1| chromosomal replication initiation protein [Rhodopseudomonas
           palustris BisB5]
 gi|123722287|sp|Q13F98|DNAA_RHOPS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|91680939|gb|ABE37241.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas
           palustris BisB5]
          Length = 472

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 80/245 (32%), Gaps = 32/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +V  +   A                    + +    G GK+ L     W
Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 188

Query: 85  SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125
           +  S + R             F    K+  S+     +     ++++D+  L       +
Sbjct: 189 AGNSGTERKVLYLTAEKFMYGFVASLKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAE 248

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H +N++      +++ A   P         + SRL    VV+++   ++    ++   
Sbjct: 249 FCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMAPLGEELRLGILKSR 308

Query: 186 -FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             A R       + + +  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 309 VVAARTHHASFDVPQSVLEYLARAITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEHEVR 368

Query: 241 ETQQC 245
           +  + 
Sbjct: 369 DLIRP 373


>gi|27375941|ref|NP_767470.1| chromosomal replication initiation protein [Bradyrhizobium
           japonicum USDA 110]
 gi|38257550|sp|Q89W63|DNAA_BRAJA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|27349079|dbj|BAC46095.1| chromosomal replication initiator protein [Bradyrhizobium japonicum
           USDA 110]
          Length = 470

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 78/245 (31%), Gaps = 32/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    ++  +   A                    + +    G GK+ L     W
Sbjct: 127 PLDPRLTFASFVIGRSNTLAHAAARQVAEGRRGDPVMFNPLYIHAGVGLGKTHLLQAVTW 186

Query: 85  SDKSRSTR--------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDF--NDTQ 125
           +  S + R               + +         +  + +   +++D+  L       +
Sbjct: 187 AGNSGNERKVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQFLQGKSTQAE 246

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H +N++      +++ A   P         + SRL    VV++    ++    ++   
Sbjct: 247 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGEELRHGILKSR 306

Query: 186 FADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            A  +       + +++  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 307 VAAARAHHATFDVPEEVLHYLARTITHNGRDLEGAINRLLAHSKLNNQPVTLEMAEREVR 366

Query: 241 ETQQC 245
           +  + 
Sbjct: 367 DLVRP 371


>gi|121587284|ref|ZP_01677057.1| chromosomal replication initiator protein DnaA [Vibrio cholerae
           2740-80]
 gi|121548530|gb|EAX58586.1| chromosomal replication initiator protein DnaA [Vibrio cholerae
           2740-80]
          Length = 213

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 51/112 (45%)

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N++ + +  +++T+  +P         L SR      V I  P+ +    +++K   D Q
Sbjct: 1   NALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQ 60

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L++ 
Sbjct: 61  IHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 112


>gi|75674200|ref|YP_316621.1| chromosomal replication initiation protein [Nitrobacter
           winogradskyi Nb-255]
 gi|123773117|sp|Q3SMV0|DNAA_NITWN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|74419070|gb|ABA03269.1| chromosomal replication initiator protein, DnaA [Nitrobacter
           winogradskyi Nb-255]
          Length = 475

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 78/245 (31%), Gaps = 32/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +   +   A                    + +    G GK+ L     W
Sbjct: 132 PLDPRLTFQSFVTGRSNTLAHAAARQVAEGRRGDSVMFNPLYIHAGVGLGKTHLLQAVTW 191

Query: 85  SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125
           +  + + R             F    K+  ++     +     ++++D+  L       +
Sbjct: 192 AGNAGTERRVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQFLQGKSTQAE 251

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H +N++      +++ A   P         + SRL    VV++    ++    ++   
Sbjct: 252 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGEELRLGILRSR 311

Query: 186 FADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
               ++      + + +  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 312 VEAARVHHASFDVPEPVLDYLAKAITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEREVR 371

Query: 241 ETQQC 245
           +  + 
Sbjct: 372 DLVRP 376


>gi|330444376|ref|YP_004377362.1| chromosomal replication initiator protein DnaA [Chlamydophila
           pecorum E58]
 gi|328807486|gb|AEB41659.1| chromosomal replication initiator protein DnaA [Chlamydophila
           pecorum E58]
          Length = 450

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 94/257 (36%), Gaps = 39/257 (15%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGP 72
            ++   + KE QL  +         D+ +  S+ +    A   I   P      + + G 
Sbjct: 102 AESPAEETKEFQLKLN----SSYRFDNFIEGSSNQFVKSAAVGIAGKPGRSYNPLFIHGG 157

Query: 73  SGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVL 112
            G GK+ L +      R                 +++   L S  ID       +   +L
Sbjct: 158 VGLGKTHLLHAIGHYVREHHKNLKIHCITTEAFINDLVYHLKSKSIDKMKNFYRSLDLLL 217

Query: 113 LEDI----DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           ++DI    +  +F +        +IN   Q    +++T+   P    +    + +R++  
Sbjct: 218 VDDIQFLQNRQNFEEEFCNTFETLINFSKQ----IVITSDKPPGQLKLS-ERIIARMEWG 272

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            V  + +PD +    ++      + + I  ++A YI   +  ++   E  ++K+      
Sbjct: 273 LVAHVGIPDLETRVAILQHKAEQKGLVIPNEVAFYIADHIYGNVRQLEGAINKLTAYCRL 332

Query: 226 RGMGITRSLAAEVLKET 242
            G GIT +   + LKE 
Sbjct: 333 FGKGITENTVHDTLKEL 349


>gi|237751287|ref|ZP_04581767.1| chromosomal replication initiator protein dnaA [Helicobacter bilis
           ATCC 43879]
 gi|229372653|gb|EEO23044.1| chromosomal replication initiator protein dnaA [Helicobacter bilis
           ATCC 43879]
          Length = 440

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 29/232 (12%)

Query: 39  SRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----R 89
           S +  +V    + A      +  +   W    +++ G +G GK+ L     +        
Sbjct: 108 SFNSFIVGECNKFAFETAKEIAKNQGKW--NPLLIYGNTGLGKTHLLYAICNAVYERTPN 165

Query: 90  STRFSNIAKSLDSIL---------------IDTRKPVLLEDIDLLDFND---TQLFHIIN 131
           +      A+S+ +                   +   +L++D+  L   D    + F+  N
Sbjct: 166 AKIVYITAESMFNEYRHRIQNNTMQHFRERFRSCDYLLIDDVQFLSNTDKFQEEFFNTFN 225

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
            I Q    ++MT+   P         L SR     + KI  P+ D    +I +  A   I
Sbjct: 226 VIVQEGGQIVMTSDKAPKLIDKLEKRLKSRFAGGMMTKIESPELDMKINIIKQKCALNNI 285

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            ++  +  +I  ++  ++   E  +  +        + IT  +   +LK+ +
Sbjct: 286 TLEPNIINFIATQLHDNIREIEGTIIDIYANMSIMNIPITLEIVKNILKDRE 337


>gi|217076354|ref|YP_002334070.1| chromosomal replication initiator protein DnaA [Thermosipho
           africanus TCF52B]
 gi|226735858|sp|B7IF65|DNAA_THEAB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|217036207|gb|ACJ74729.1| chromosomal replication initiator protein DnaA [Thermosipho
           africanus TCF52B]
          Length = 438

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 34/199 (17%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLANI------- 83
           P     + ++ +V +    A  +       P     + L    G GK+ LA         
Sbjct: 99  PLNPKYTFENFVVGNFNRFAYNVFLEASKKPGYYNPIFLYSGVGLGKTHLAQALGNFLLE 158

Query: 84  --------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQL 126
                         + ++      +   +            ++++DI     +     +L
Sbjct: 159 NDPDLKVAYLTSEDFMNEMFYAIKNGTTEEFREKYRKKADILIIDDIQFLIGIKSAQVEL 218

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL----KAATVVKISLPDDDFLEKVI 182
           FH  N+IH+    +++ +   P      L D  SR+    +   +VKI  P  + L K+ 
Sbjct: 219 FHTFNAIHEAGKQIIICSDRTPQE----LKDFHSRMISRFQMGLLVKIENPTKEDLFKIG 274

Query: 183 VKMFADRQIFIDKKLAAYI 201
            K+   + + I+ ++  YI
Sbjct: 275 KKISKLKGVEINDEIIDYI 293


>gi|307294072|ref|ZP_07573916.1| chromosomal replication initiator protein DnaA [Sphingobium
           chlorophenolicum L-1]
 gi|306880223|gb|EFN11440.1| chromosomal replication initiator protein DnaA [Sphingobium
           chlorophenolicum L-1]
          Length = 470

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 27/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
                 D  +       A     +           + + G +G GK+ L +  +    S 
Sbjct: 135 QPRHGFDGFVTGETNHLAFSAAQAMAGEGQPRFSPLFIHGGTGQGKTHLLHAIARLFSSH 194

Query: 92  RFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLDF---NDTQLFH 128
             S     + +                      +   + +L++DI  +        +  H
Sbjct: 195 SPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLLLIDDIQFIAGKGSTQEEFLH 254

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            IN +    + + +TA   P       P + SRL    V  I     D    ++    A 
Sbjct: 255 TINDLIDSGARIAITADRAPQMLDAIDPRILSRLAGGLVADIRPAGLDLRLAILEAKRAI 314

Query: 189 RQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
                +   +  ++ + +  ++   E   +K+       G  I    A  +L +  + +
Sbjct: 315 AGDPPVPDAVVDFLARSIRSNVRELEGAFNKLIAYGQLTGRSIDLEFAQAMLADAVRAN 373


>gi|15805044|ref|NP_293728.1| chromosomal replication initiation protein [Deinococcus radiodurans
           R1]
 gi|6457661|gb|AAF09596.1|AE001864_2 chromosomal replication initiator protein [Deinococcus radiodurans
           R1]
          Length = 454

 Score = 84.0 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 89/237 (37%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----WSDK 87
               + ++ +V      A     +    P +    + + G  G GK+ L +      +++
Sbjct: 112 NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLFIYGDVGLGKTHLMHAVGHYLAER 171

Query: 88  SRSTRFSNIA-KSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
               R   ++ ++  + LI+  +                +L++DI  L   +    + FH
Sbjct: 172 FPEKRIEYVSTETFTNELINAIRDDKTTQFRNRYRSVDLLLVDDIQFLAGKERTQEEFFH 231

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  P+ +    ++      
Sbjct: 232 TFNALYESNKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEYETRVAILKMNAEQ 291

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             I I +++   I +++  ++   E  + ++   A    +  +R+ AA+ L      
Sbjct: 292 GHITIPQEVLELIARQVTSNIRELEGALMRVVAFASLNNVPFSRAAAAKALSNVFAP 348


>gi|984962|gb|AAA85543.1| dnaA [Mycobacterium tuberculosis]
          Length = 260

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 70/191 (36%), Gaps = 25/191 (13%)

Query: 76  GKSCLANIWSDKSRSTRFSNI---AKSLDSILIDTRKP------------------VLLE 114
           GK+ L +  +       F  +     S +    D                      +L++
Sbjct: 1   GKTHLLHA-AGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVD 59

Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DI  ++  +    + FH  N++H  +  +++++   P         L +R +   +  + 
Sbjct: 60  DIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQ 119

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            P+ +    ++ K     ++ +   +   I + +E ++   E  + ++   A      I 
Sbjct: 120 PPELETRIAILRKKAQMERLXVPDDVLELIARXIEXNIXVLEGALIRVTPFASLNKTPID 179

Query: 232 RSLAAEVLKET 242
           ++LA  VL++ 
Sbjct: 180 KALAEIVLRDL 190


>gi|83308727|emb|CAJ01637.1| putative chromosomal replication initiator protein dnaA
           [Methylocapsa acidiphila]
          Length = 508

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 79/247 (31%), Gaps = 34/247 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDS----WPSWP--SRVVILVGPSGSGKSCLANIWSD 86
           P    ++  + LV  + + A           P  P     + L    G GK+ L    + 
Sbjct: 166 PLDRRLNFSNFLVGKSNQLAHAAAQRVASTEPGEPLTYNPLYLHASVGLGKTHLLQAVAH 225

Query: 87  KSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQL 126
            +       I  + +  +                  +     ++++DI  L       + 
Sbjct: 226 AASDVTRRVIYLTAEKFMYGFVSALKAQTAIAFKERLRGIDVLVIDDIQFLQGKSIQQEF 285

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            H +N++      +++ A   P         + SRL     V++   D+    K++    
Sbjct: 286 CHTLNALIDARRQIVIAADRPPGDLESLDERVRSRLAGGLCVEMGGLDEALRVKILETRI 345

Query: 187 ADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI---TRSLAAEV 238
           A  Q       +   + AY+   ++ +    +  V+++   A   G  +   T  LA   
Sbjct: 346 AAAQAVHSNFDVPPAVIAYVASVIQTNGRDLDGAVNRLLAHASLSGAPLGVETAELAIRD 405

Query: 239 LKETQQC 245
           L  T + 
Sbjct: 406 LVRTHEP 412


>gi|330831850|ref|YP_004400675.1| chromosomal replication initiator protein [Streptococcus suis ST3]
 gi|329306073|gb|AEB80489.1| chromosomal replication initiator protein [Streptococcus suis ST3]
          Length = 457

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 87/242 (35%), Gaps = 33/242 (13%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----S 85
               +  + +           A+ + D+        + + G  G GK+ + N       +
Sbjct: 121 KSQYTFANFVQGDNNHWAKAAALAVSDNLGE-LYNPLFIFGGPGLGKTHILNAIGNKFLA 179

Query: 86  DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLL---DFNDTQLF 127
           D  ++      +++  +  ++                   +L++DI  L        + F
Sbjct: 180 DNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFF 239

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H+ +  +++T+   P         L +R K     +I+ PD +    ++     
Sbjct: 240 HTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFETRIAILRNKCE 299

Query: 188 DRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +       +  +Y+  + +   R L  A K +  +    + +   I+  +AAE ++  +Q
Sbjct: 300 NLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI--ATMRQLSEISVEVAAEAIRSRKQ 357

Query: 245 CD 246
            +
Sbjct: 358 TN 359


>gi|253754648|ref|YP_003027788.1| chromosomal replication initiator protein [Streptococcus suis
           BM407]
 gi|251817112|emb|CAZ54833.1| chromosomal replication initiator protein [Streptococcus suis
           BM407]
          Length = 444

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 87/242 (35%), Gaps = 33/242 (13%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----S 85
               +  + +           A+ + D+        + + G  G GK+ + N       +
Sbjct: 108 KSQYTFANFVQGDNNHWAKAAALAVSDNLGE-LYNPLFIFGGPGLGKTHILNAIGNKVLA 166

Query: 86  DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLL---DFNDTQLF 127
           D  ++      +++  +  ++                   +L++DI  L        + F
Sbjct: 167 DNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFF 226

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H+ +  +++T+   P         L +R K     +I+ PD +    ++     
Sbjct: 227 HTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFETRIAILRNKCE 286

Query: 188 DRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +       +  +Y+  + +   R L  A K +  +    + +   I+  +AAE ++  +Q
Sbjct: 287 NLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI--ATMRQLSEISVEVAAEAIRSRKQ 344

Query: 245 CD 246
            +
Sbjct: 345 TN 346


>gi|146319849|ref|YP_001197375.1| chromosomal replication initiation protein [Streptococcus suis
           05ZYH33]
 gi|146322039|ref|YP_001199561.1| chromosomal replication initiation protein [Streptococcus suis
           98HAH33]
 gi|253750924|ref|YP_003024065.1| chromosomal replication initiator protein [Streptococcus suis SC84]
 gi|253752823|ref|YP_003025963.1| chromosomal replication initiator protein [Streptococcus suis P1/7]
 gi|145690655|gb|ABP91161.1| ATPase involved in DNA replication initiation [Streptococcus suis
           05ZYH33]
 gi|145692845|gb|ABP93350.1| ATPase involved in DNA replication initiation [Streptococcus suis
           98HAH33]
 gi|251815213|emb|CAZ50777.1| chromosomal replication initiator protein [Streptococcus suis SC84]
 gi|251819068|emb|CAR44080.1| chromosomal replication initiator protein [Streptococcus suis P1/7]
 gi|292557465|gb|ADE30466.1| chromosomal replication initiator protein, DnaA [Streptococcus suis
           GZ1]
 gi|319757173|gb|ADV69115.1| chromosomal replication initiator protein [Streptococcus suis JS14]
          Length = 457

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 87/242 (35%), Gaps = 33/242 (13%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----S 85
               +  + +           A+ + D+        + + G  G GK+ + N       +
Sbjct: 121 KSQYTFANFVQGDNNHWAKAAALAVSDNLGE-LYNPLFIFGGPGLGKTHILNAIGNKVLA 179

Query: 86  DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLL---DFNDTQLF 127
           D  ++      +++  +  ++                   +L++DI  L        + F
Sbjct: 180 DNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFF 239

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H+ +  +++T+   P         L +R K     +I+ PD +    ++     
Sbjct: 240 HTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFETRIAILRNKCE 299

Query: 188 DRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +       +  +Y+  + +   R L  A K +  +    + +   I+  +AAE ++  +Q
Sbjct: 300 NLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI--ATMRQLSEISVEVAAEAIRSRKQ 357

Query: 245 CD 246
            +
Sbjct: 358 TN 359


>gi|14194696|sp|Q9RYE7|DNAA_DEIRA RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 466

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 89/237 (37%), Gaps = 26/237 (10%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----WSDK 87
               + ++ +V      A     +    P +    + + G  G GK+ L +      +++
Sbjct: 124 NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLFIYGDVGLGKTHLMHAVGHYLAER 183

Query: 88  SRSTRFSNIA-KSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128
               R   ++ ++  + LI+  +                +L++DI  L   +    + FH
Sbjct: 184 FPEKRIEYVSTETFTNELINAIRDDKTTQFRNRYRSVDLLLVDDIQFLAGKERTQEEFFH 243

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N++++ +  +++++   P         L SR +   +  I  P+ +    ++      
Sbjct: 244 TFNALYESNKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEYETRVAILKMNAEQ 303

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
             I I +++   I +++  ++   E  + ++   A    +  +R+ AA+ L      
Sbjct: 304 GHITIPQEVLELIARQVTSNIRELEGALMRVVAFASLNNVPFSRAAAAKALSNVFAP 360


>gi|223933958|ref|ZP_03625917.1| chromosomal replication initiator protein DnaA [Streptococcus suis
           89/1591]
 gi|302023110|ref|ZP_07248321.1| chromosomal replication initiation protein [Streptococcus suis
           05HAS68]
 gi|223897377|gb|EEF63779.1| chromosomal replication initiator protein DnaA [Streptococcus suis
           89/1591]
          Length = 457

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 87/242 (35%), Gaps = 33/242 (13%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----S 85
               +  + +           A+ + D+        + + G  G GK+ + N       +
Sbjct: 121 KSQYTFANFVQGDNNHWAKAAALAVSDNLGE-LYNPLFIFGGPGLGKTHILNAIGNKVLA 179

Query: 86  DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLL---DFNDTQLF 127
           D  ++      +++  +  ++                   +L++DI  L        + F
Sbjct: 180 DNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFF 239

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H  N++H+ +  +++T+   P         L +R K     +I+ PD +    ++     
Sbjct: 240 HTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFETRIAILRNKCE 299

Query: 188 DRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +       +  +Y+  + +   R L  A K +  +    + +   I+  +AAE ++  +Q
Sbjct: 300 NLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI--ATMRQLSEISVEVAAEAIRSRKQ 357

Query: 245 CD 246
            +
Sbjct: 358 TN 359


>gi|92115634|ref|YP_575363.1| chromosomal replication initiation protein [Nitrobacter
           hamburgensis X14]
 gi|122990363|sp|Q1QS94|DNAA_NITHX RecName: Full=Chromosomal replication initiator protein DnaA
 gi|91798528|gb|ABE60903.1| chromosomal replication initiator protein DnaA [Nitrobacter
           hamburgensis X14]
          Length = 475

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 73/246 (29%), Gaps = 34/246 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +   +   A                    + +    G GK+ L     W
Sbjct: 132 PLDPRLTFASFVTGRSNTLAHAAARQVAEGRRGDSIMFNPLYIHAGVGLGKTHLLQAVTW 191

Query: 85  SDKSR------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDT 124
           +  +                   +   S  A +     +     ++++D+  L       
Sbjct: 192 AGNAGTERKVLYLTAEKFMYGFVAALKSQTALAFKEA-LRGIDVLVIDDLQFLQGKSTQA 250

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H +N++      +++ A   P         + SRL    VV++    ++    ++  
Sbjct: 251 EFCHTLNALIDAGRQVVVAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGEELRLGILKS 310

Query: 185 -----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                        + + +  Y+ + +  +    E  ++++   +      +T  +A   +
Sbjct: 311 RIEVARAHHASFSVPEPVLDYLAKAITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEREV 370

Query: 240 KETQQC 245
           ++  + 
Sbjct: 371 RDLIRP 376


>gi|86747128|ref|YP_483624.1| chromosomal replication initiation protein [Rhodopseudomonas
           palustris HaA2]
 gi|123004838|sp|Q2J497|DNAA_RHOP2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|86570156|gb|ABD04713.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas
           palustris HaA2]
          Length = 472

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 76/245 (31%), Gaps = 32/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +V  +   A                    + +    G GK+ L     W
Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 188

Query: 85  SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125
           +  +   R             F    K+  S+     +     ++++D+  L       +
Sbjct: 189 AGNTGIERKVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAE 248

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK- 184
             H +N++      +++ A   P         + SRL    VV+++   +D    ++   
Sbjct: 249 FCHTLNALIDAGRQVVVAADRPPSDLESLDERVRSRLAGGLVVEMAPLGEDLRLGILKSR 308

Query: 185 ----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                       +   +  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 309 VVAARAHHASFDVPAPVLEYLARAITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEHEVR 368

Query: 241 ETQQC 245
           +  + 
Sbjct: 369 DLIRP 373


>gi|115522031|ref|YP_778942.1| chromosomal replication initiation protein [Rhodopseudomonas
           palustris BisA53]
 gi|122298220|sp|Q07VS2|DNAA_RHOP5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|115515978|gb|ABJ03962.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas
           palustris BisA53]
          Length = 474

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 73/246 (29%), Gaps = 34/246 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +V  +   A                    + +    G GK+ L     W
Sbjct: 131 PLDPRLTFSSFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 190

Query: 85  SDKSR------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDT 124
           +  S                   +   S  A +     +     ++++D+  L       
Sbjct: 191 AGNSGLERKVLYLTAEKFMYGFVAALKSQTALAFKEA-LRGIDVLVIDDLQFLQGKTTQA 249

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H +N++      +++ A   P         + SRL    VV+++   ++    ++  
Sbjct: 250 EFCHTLNALIDAGRQVVIAADRPPSDLESLDERVRSRLAGGLVVEMASLGEELRLGILKS 309

Query: 185 -----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                        +   +  Y+   +  +    E  ++++   +      +T  +A   +
Sbjct: 310 RVTAARAHHASFEVPLPVLEYLAHSITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEREV 369

Query: 240 KETQQC 245
           ++  + 
Sbjct: 370 RDLIRP 375


>gi|294010810|ref|YP_003544270.1| chromosomal replication initiator protein DnaA [Sphingobium
           japonicum UT26S]
 gi|292674140|dbj|BAI95658.1| chromosomal replication initiator protein DnaA [Sphingobium
           japonicum UT26S]
          Length = 469

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 75/259 (28%), Gaps = 27/259 (10%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71
           + +     +    L  +         D  +       A     +           + + G
Sbjct: 114 QAEETVADDGAADLPPASNFQPRHGFDGFVTGETNHLAYSAAQAMAGEAQPRFSPLFIHG 173

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPV 111
            +G GK+ L +  +    S   S     + +                      +   + +
Sbjct: 174 GTGQGKTHLLHAIARLFSSHSPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLL 233

Query: 112 LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L++DI  +        +  H IN +    + +++TA   P         + SRL    V 
Sbjct: 234 LIDDIQFIAGKGSTQEEFLHTINDLIDSGARIVVTADRAPQMLDAIDARILSRLAGGLVA 293

Query: 169 KISLPDDDFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            I     D    ++    A      +   +  ++ + +  ++   E   +K+       G
Sbjct: 294 DIRPAGLDLRLAILEAKRAIAGDPPVPDAVVDFLARSIRSNVRELEGAFNKLIAYGQLTG 353

Query: 228 MGITRSLAAEVLKETQQCD 246
             I    A  +L +  + +
Sbjct: 354 RSIDLEFAQAMLADAVRAN 372


>gi|242280649|ref|YP_002992778.1| chromosomal replication initiator DnaA [Desulfovibrio salexigens
           DSM 2638]
 gi|242123543|gb|ACS81239.1| Chromosomal replication initiator DnaA [Desulfovibrio salexigens
           DSM 2638]
          Length = 453

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 86/273 (31%), Gaps = 46/273 (16%)

Query: 17  KNDQPKN---KEEQLFFSFPR-----------CLGISRDDLLVHSAIEQAVR----LIDS 58
           K D+P+    +  Q     P                S DD ++  +   A      L D+
Sbjct: 87  KVDRPRPAAARPVQASMGLPMMSSAVVNTRIPRWRFSFDDFVIGESNRLACAASRSLCDN 146

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIW----SDKSRSTRFSNIAKSLDS------------ 102
             S P   + +    G GK+ L +         S     S    + +             
Sbjct: 147 --SLPGDQLFMSSAPGLGKTHLLHSIGKNLCASSNKKNISIACLTAEEFANRMVLALKAG 204

Query: 103 -------ILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
                     D    +LLEDI           ++   + S+    S ++MT+   P    
Sbjct: 205 EISRFKSEFRDNVDCLLLEDIHFFQGKQKMQDEILETLKSLQLRGSKVVMTSSFLPRELD 264

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
              P L SR  +  +  IS PD +  ++++          +   ++  +  R+   +   
Sbjct: 265 KVDPQLVSRFSSGLLALISTPDFETRKRIVESKAIRLGTQVPDSISELLADRITTDVRQL 324

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           E  +  +   A      +++ LA +VL+     
Sbjct: 325 ESCLQNLVLKARLLNRDVSQELAWQVLENYSIA 357


>gi|187734518|ref|YP_001876630.1| chromosomal replication initiator protein DnaA [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187424570|gb|ACD03849.1| chromosomal replication initiator protein DnaA [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 468

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 76/208 (36%), Gaps = 29/208 (13%)

Query: 38  ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------SDKS 88
            + D  +V+     A +    +          + L G SG GK+ L           D S
Sbjct: 133 YTFDSFVVYEDSRFAYQAGLSVAQSERALFNPLFLYGKSGVGKTHLLQAIGHEVLHQDSS 192

Query: 89  RSTRFSNIAKSLDSILIDTR-----------------KPVLLEDIDLLDFND---TQLFH 128
            +  +    +  +  +  +R                   +L++D+  +   +    +  H
Sbjct: 193 TNVVYVTGEQFANEFIDASRTQNGQSFTKLRRKYRKADVLLVDDVQFISGKEKTVEEFLH 252

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             + +     ++++ A           P L +RL++   V+++LPDD+   +++      
Sbjct: 253 TFDELFHAHKTIVICADAAACDISNLDPRLAARLESGLTVELNLPDDNARLEILRSKRDR 312

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             + +  ++  ++  R+++S+   E  +
Sbjct: 313 AGMNVSDEILEFLASRIQKSVRRLEGAL 340


>gi|154248706|ref|YP_001409531.1| chromosomal replication initiator protein DnaA [Fervidobacterium
           nodosum Rt17-B1]
 gi|154152642|gb|ABS59874.1| chromosomal replication initiator protein DnaA [Fervidobacterium
           nodosum Rt17-B1]
          Length = 444

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 80/243 (32%), Gaps = 31/243 (12%)

Query: 8   YSFFVPDKQK-----NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS- 61
           Y       QK     ND      ++     P     +  + +V    + A  ++      
Sbjct: 73  YEIVYAQVQKDEVANNDNGALVRKRPVLITPVSSRYTFSNFVVEEFNQLAYTILLESAKK 132

Query: 62  -WPSRVVILVGPSGSGKSCLANIW---------------------SDKSRSTRFSNIAKS 99
                 + +   +G GK+ L   +                      ++  +   +   + 
Sbjct: 133 LGTFNPIFIYSKAGMGKTHLVQAFGNYLLENDPDIRFAYLTSEAFMNELIAKLKAGTVEE 192

Query: 100 LDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                      ++++DI  L        +LFH  N++++    +++ +   P        
Sbjct: 193 FREKYRKKVDVLVIDDIQFLAGKKGVQIELFHTFNTLYEAGKQIIVCSDRSPKELKDFQD 252

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            + SR +   VV+I  P  + + ++  K+  D +  I   +  Y+ +  + S+   +  +
Sbjct: 253 RVISRFQMGVVVEIKNPSVEAMYRIAKKIVEDEKADISDDILNYVAKHFKGSIRILKGAI 312

Query: 217 DKM 219
            K+
Sbjct: 313 IKL 315


>gi|116510844|ref|YP_808060.1| chromosomal replication initiation protein [Lactococcus lactis
           subsp. cremoris SK11]
 gi|125622883|ref|YP_001031366.1| chromosomal replication initiation protein [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|123320723|sp|Q033I4|DNAA_LACLS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166214677|sp|A2RH74|DNAA_LACLM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|116106498|gb|ABJ71638.1| ATPase for DNA replication initiation [Lactococcus lactis subsp.
           cremoris SK11]
 gi|124491691|emb|CAL96609.1| replication initiation protein DnaA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300069621|gb|ADJ59021.1| chromosomal replication initiation protein [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 454

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 96/280 (34%), Gaps = 42/280 (15%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLG-------------ISRDDLLVHSAI---- 49
           DY  +  D+  + + +    Q     P  +               + ++ +         
Sbjct: 77  DYELYANDELTDIELRRLNNQSPVDEPLSVAKPTSPLVSGLNEKYNFENFVQGPGNRWTL 136

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSIL 104
             A+ + D         + + G +G GK+ L +   ++       +      +++  +  
Sbjct: 137 AAAIAVADKPGD-TYNPLFIYGGAGLGKTHLMHAIGNQILTDNPTARIKYVSSENFVNDY 195

Query: 105 IDTRKPVLLEDIDLL------------------DFNDTQLFHIINSIHQYDSSLLMTART 146
           ++  +   +E  +                    +    + F+  N+++   S +++T+  
Sbjct: 196 VNATRKNQMESFENTYRNLDLLLLDDVQFFSDKEGTKNEFFNTFNALYDKGSQIVLTSDR 255

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P         L SR        I+ PD +    +++       +    +  +YI  +++
Sbjct: 256 IPQELNNLEDRLVSRFSWGLTTDITAPDYETRMAILLIKSESSHLEFPSETLSYIAGQID 315

Query: 207 RSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKETQQC 245
            ++   E  +++++ +A + G+ I     A++ L+  +  
Sbjct: 316 SNVRELEGALNRVEFVARANGISIVDIETASQALRSLKNA 355


>gi|226226817|ref|YP_002760923.1| bacterial DnaA family protein [Gemmatimonas aurantiaca T-27]
 gi|226090008|dbj|BAH38453.1| bacterial DnaA family protein [Gemmatimonas aurantiaca T-27]
          Length = 592

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 26/161 (16%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------SDKS 88
            +R+ L + +  + A+R +D+    P R    ++L GPSGSGKS   +        +D  
Sbjct: 389 FTRESLQISTGNQLALRAVDAVLEEPGRRYNPLLLHGPSGSGKSHTVHAIGNAMKQADGR 448

Query: 89  RSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFNDT---QLFHIIN 131
           R+    +    ++  +                     +L+DI  L   +    +LFH+ N
Sbjct: 449 RAVACLSAGTFVEEFVAAMQEGGVERWRARYRAADVFILDDIQELVGKERTQDELFHLFN 508

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +    S +++T+   P         L SR +   VV +  
Sbjct: 509 HLVNRGSQVVLTSDRIPRDLNGFADRLRSRFEGGLVVALPA 549



 Score = 80.2 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 76/217 (35%), Gaps = 29/217 (13%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTR- 92
            +  D  +V  +   A     +    P +    + + G SG GK+ L    +++++  + 
Sbjct: 8   KLRFDTFVVGGSNRLAASAARAVADAPGQAYNPLFVYGESGRGKTHLVAAIANRAQENQP 67

Query: 93  --------FSNIAKSLDSILIDT-----------RKPVLLEDIDLLDFN---DTQLFHII 130
                      +A+ L   +                 ++L+D+  L       ++L  ++
Sbjct: 68  DLRVLFSSGEEVAEHLHQSIASGQPQRFLEHYQQADLLILDDVQFLTGQRETQSELLRLL 127

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N + +    L+ T+   P         L SRL    VV +  PD +    ++  +  +R+
Sbjct: 128 NVLMRAGQQLVFTSDRQPADIPDVDQRLLSRLSGGLVVDVGSPDFEMRLAILRNVAVERR 187

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
                 +    V R+        +L   ++ L+  + 
Sbjct: 188 TDFASGVLD-EVARLP--FANVRELKGALNKLSAYQQ 221


>gi|301058134|ref|ZP_07199186.1| chromosomal replication initiator protein DnaA [delta
           proteobacterium NaphS2]
 gi|300447766|gb|EFK11479.1| chromosomal replication initiator protein DnaA [delta
           proteobacterium NaphS2]
          Length = 449

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 98/274 (35%), Gaps = 42/274 (15%)

Query: 7   DYSFFVPDKQKNDQPK---NKEEQLFFS----------FPRCLGISRDDLLVHSAIEQAV 53
           D    V  +++   P       +QL             F      + D  +V  + E A 
Sbjct: 72  DVQLKVQRRKRTPSPAAFAPHPDQLILPGMPEKKRKKNFLLNSQFTFDRFIVGQSNEFAF 131

Query: 54  RLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSIL 104
               +           +++L   +G GK+ L+      I +   RS  F   A+   + +
Sbjct: 132 SASKNIALGDGCDYHSLLMLS-NTGLGKTHLSQAIGHSILAKNPRSRVFYMTAEDFTNEM 190

Query: 105 IDTRK----------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145
           I + +                 +LLE++  L   +    +L + ++++ Q    ++ T+ 
Sbjct: 191 IASLRNRRIEAFKNRYRQSCDVLLLEEVHFLGGKEKIQAELGYTLDALAQDRKKIIFTSS 250

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P        +L SRL +  V  I  PD     K++ +      + + K +  ++  R+
Sbjct: 251 LPPKDIPQMSKELSSRLTSGLVTTIGGPDYHTRIKILEEKAKGFNVVLSKDVVHFLANRL 310

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           +R +   E  +  +   A   G  I   LA +V+
Sbjct: 311 KRDVRQMESALKCLKARAELVGAKINMDLAKDVV 344


>gi|283777803|ref|YP_003368558.1| chromosomal replication initiator DnaA [Pirellula staleyi DSM 6068]
 gi|283436256|gb|ADB14698.1| Chromosomal replication initiator DnaA [Pirellula staleyi DSM 6068]
          Length = 570

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 77/241 (31%), Gaps = 25/241 (10%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLAN-IWSD 86
             + R      D  +       A+    S          ++  GP G GK+ L   IWS 
Sbjct: 222 LRWTRRPFARLDSFVEGDGNRIALSAAKSVLPRLGKMSPLVFSGPPGCGKTHLLEGIWSH 281

Query: 87  KSRSTRFSNI----AKSLDSILIDT---------------RKPVLLEDIDLLDFND---T 124
               +    +    A+   +  ++                 + +L++DI          T
Sbjct: 282 ARHHSSLKRVVYLTAEQFTTHFVEALRGSGLPSFRKKYRDVELLLIDDIQFFAGKQSTLT 341

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +L + I ++ +    L++ A        +   D+ +RL    V  I   D      ++ +
Sbjct: 342 ELLYTIETLLREGRQLVLAADRPLSQLRMLGADVVNRLGGGLVCTIDPADFGTRRGILER 401

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +  +R + +   +  ++   +E         ++++   A      +T   A   L +   
Sbjct: 402 LAIERSVVVPSDVLDWLAASLEGDARLLSGAMNRLAATAEMSQKALTLESAEAALSDLLG 461

Query: 245 C 245
            
Sbjct: 462 A 462


>gi|240849789|ref|YP_002971177.1| chromosomal replication initiator protein DnaA [Bartonella grahamii
           as4aup]
 gi|240266912|gb|ACS50500.1| chromosomal replication initiator protein DnaA [Bartonella grahamii
           as4aup]
          Length = 523

 Score = 83.7 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 64/207 (30%), Gaps = 32/207 (15%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANI 83
            F  P     + +  +  ++   A+    S        +      +    G GK+ L   
Sbjct: 174 VFGSPLDSRYTFESFVEGASNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQA 233

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127
            +  +     S     L +     R    + D            IDLL  +D Q      
Sbjct: 234 IAASALKRLTSARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 293

Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                 H++N +      +++ A   P         + SRL+    ++I  PD +   ++
Sbjct: 294 IQHEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEAPDYEMRLQM 353

Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203
           + +     Q     + I   +  YI +
Sbjct: 354 LRQRLKVAQQDDGMVSISDDILEYIAK 380


>gi|330813297|ref|YP_004357536.1| chromosomal replication initiator protein DnaA [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486392|gb|AEA80797.1| chromosomal replication initiator protein DnaA [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 465

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 82/235 (34%), Gaps = 29/235 (12%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPS--WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            ++  + +V  + +                  + + G  G GK+ + N   ++ + T   
Sbjct: 128 RLTFSNYVVGESNQLVFSAAKRVSESLGHYNPLFIYGSVGLGKTHILNAIGNELKKTDKK 187

Query: 95  NIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQLFHIINSI 133
            I  S +                    +      ++L+DI  +   +    + F+  NS+
Sbjct: 188 IIYLSAERFMYQFVKSIKNKDTQKFKDVFRNADVLILDDIQFISGKEVTQEEFFYTFNSL 247

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD----- 188
            +  S ++++    P         + SRL    VV I  PD     +++           
Sbjct: 248 VENQSQVIVSCDRSPNDLDRIQDRIKSRLSGGLVVDIQPPDIALRLQILKNRCKTEETYF 307

Query: 189 -RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +++ I  ++ ++I    + S+     +++++   +  +    T   A  +LK+ 
Sbjct: 308 GKEVLISDEILSFIANEFKSSIRDMLGVLNRIIASSRIQNKVPTLQDARLILKDL 362


>gi|90421529|ref|YP_529899.1| chromosomal replication initiation protein [Rhodopseudomonas
           palustris BisB18]
 gi|123395361|sp|Q21DF6|DNAA_RHOPB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|90103543|gb|ABD85580.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas
           palustris BisB18]
          Length = 473

 Score = 83.3 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 74/246 (30%), Gaps = 34/246 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    ++  +   A                    + +    G GK+ L     W
Sbjct: 130 PLDPRLTFGSFVIGRSNTLAHAAARQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 189

Query: 85  SDKSR------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDT 124
           +  S                   +   S  A +     +     ++++D+  L       
Sbjct: 190 AGNSGTERKVLYLTAEKFMYGFVAALKSQTALAFKEA-LRGIDVLVIDDLQFLQGKTTQA 248

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H +N++      +++ A   P         + SRL    VV+++   +D    ++  
Sbjct: 249 EFCHTLNALIDAGRQVVIAADRPPSDLESLDERVRSRLAGGLVVEMASLGEDLRLGILKS 308

Query: 185 -----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                        +   +  Y+ + +  +    E  ++++   +      +T  +A   +
Sbjct: 309 RVTAARAHHASFDVPLPVLEYLARTITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEREI 368

Query: 240 KETQQC 245
           ++  + 
Sbjct: 369 RDLVRP 374


>gi|94986446|ref|YP_594379.1| DNA replication initiation ATPase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|226735823|sp|Q1MSG8|DNAA_LAWIP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|94730695|emb|CAJ54057.1| ATPase involved in DNA replication initiation [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 478

 Score = 82.9 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 89/264 (33%), Gaps = 45/264 (17%)

Query: 23  NKEEQLFFS-------FPRCL-GISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILV 70
           ++ EQL          F       S D  +V          A  +I    S     + L 
Sbjct: 119 SQTEQLPLPVSLVKAPFSSRSWRYSFDSFVVGPCNNLAHAAAQNMIKDTAS--VDTLFLS 176

Query: 71  GPSGSGKSCLANIWSDK---------------SRSTRFSNIAKSLDSILIDT-------R 108
              G GK+ L                      +     S   +SL +  +D+        
Sbjct: 177 SGPGLGKTHLTQAVGQALCNISNRANPKVEYLTAEEFCSCFVQSLRTKNVDSFKGRFRDT 236

Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
              LLEDI  L   +    +L   I S+    S +++T+   P         L SR  + 
Sbjct: 237 DLFLLEDIHFLQGKEKMQDELLATIRSLQGRGSRVVLTSSFAPKELKNVDNRLVSRFCSG 296

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +  I  P+ +   +++++      + + + +A ++  ++   +    +L   + NL L 
Sbjct: 297 FLAGIEKPNAETRRRILIEKAKVHAVVLSEAVADFLAMKL---VGDIRQLESSISNLVLK 353

Query: 226 RG---MGITRSLAAEVLKETQQCD 246
                  I+  +A +V+ +  Q D
Sbjct: 354 AKLLDCMISMDMAKDVIAQYTQDD 377


>gi|148651819|ref|YP_001278912.1| chromosomal replication initiator protein DnaA [Psychrobacter sp.
           PRwf-1]
 gi|148570903|gb|ABQ92962.1| chromosomal replication initiator protein DnaA [Psychrobacter sp.
           PRwf-1]
          Length = 470

 Score = 82.9 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 78/234 (33%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS- 88
               + +  +   +   A +           +  +  + L GPSG GK+ L +  + +  
Sbjct: 136 NPYFTFETFVSGKSNMLAYKACQELGKKQSQNRHNP-LFLYGPSGLGKTHLMHSVAHRYL 194

Query: 89  ---------------RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFH 128
                              ++   + ++     I     ++++D+ +L     +  +   
Sbjct: 195 KIGKTFYYFSSEKFINQLVYALRNQKIEEFKRKIKRVDLLIIDDVHVLAGKNKSSNEFLS 254

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           +          +++ +   P           SR  +   V I  P+ +   +++ K    
Sbjct: 255 LFADFMVEGKQVILASDRHPSQMTEFDERFRSRFSSGLAVAIEPPEMETRMQILQKKAHL 314

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + K+ A +I Q +  ++   E  ++++   A   G  I   +    LK+ 
Sbjct: 315 SGVDLPKECALFIAQNVVSNVRRLEGALNQVVATANLTGNPIDLDMVQYALKDV 368


>gi|317486879|ref|ZP_07945690.1| chromosomal replication initiator protein DnaA [Bilophila
           wadsworthia 3_1_6]
 gi|316921869|gb|EFV43144.1| chromosomal replication initiator protein DnaA [Bilophila
           wadsworthia 3_1_6]
          Length = 477

 Score = 82.9 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 78/259 (30%), Gaps = 35/259 (13%)

Query: 23  NKEEQLFFSF--------PRCLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGP 72
           +  EQL            P     + D  +V    + A     +          + L   
Sbjct: 123 SAAEQLSLPITMPVNQSVPHNWRYAFDSFVVGPTNDMAYAAARNMARSGAAVDTLFLSSG 182

Query: 73  SGSGKSCLANIW-------------------SDKSRSTRFSNIAKSLDSIL---IDTRKP 110
            G GK+ L                       +++  S     +                 
Sbjct: 183 PGLGKTHLTQAVGQALCEASNRSNPKVEYLTAEEFSSCFVQALQSRTVDRFKGRFRDVDL 242

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +LLED+  L   +    ++   I S+ +  S +++T+   P         L SR  +  +
Sbjct: 243 LLLEDVHFLQGKEKMQDEVLSTIKSLQEKGSRVVLTSSFAPCELRNVDNSLVSRFCSGFL 302

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD     +++ +        +   +   + +R+   +   E  V  +   A   G
Sbjct: 303 AGIEKPDASTRRRILQEKARQNNALLSDTVVDVLTERLTGDIRQLESCVHNLLLKAKLLG 362

Query: 228 MGITRSLAAEVLKETQQCD 246
             I+  +A E+L +    D
Sbjct: 363 CTISVEMAQEILAQYSLDD 381


>gi|116747453|ref|YP_844140.1| chromosomal replication initiator protein DnaA [Syntrophobacter
           fumaroxidans MPOB]
 gi|166215364|sp|A0LE53|DNAA_SYNFM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|116696517|gb|ABK15705.1| chromosomal replication initiator protein DnaA [Syntrophobacter
           fumaroxidans MPOB]
          Length = 450

 Score = 82.9 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 80/231 (34%), Gaps = 27/231 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANI-------- 83
               + D  +V    + A        +     ++ V L+  +G GKS L +         
Sbjct: 110 NPRFTFDHFVVGGCNQFAYAAAMGMANNQQLYNQSVYLLSDTGLGKSHLTHAVGNYLRNR 169

Query: 84  -------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLF 127
                        ++++   +  +   ++  +        +LLE I+ L   +    +L 
Sbjct: 170 KPELRVQYVTTEQFANEMIFSLKNGNMEAFKNKFRTGCDVLLLEKIEFLSGKEKIQKELV 229

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           + ++ +     ++L T   +P        +L SRL    +  I  PD     ++I +   
Sbjct: 230 YTLDELMDRGKTVLCTGNAYPKDIPKLNSELQSRLGGGLLAPIDKPDFKTRIEIIKRKSH 289

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
              I +  ++  Y+  R+   +   E  +  +   +      IT  LA EV
Sbjct: 290 TENIRVPMEVVEYLADRITGDVRQLESCLVGLMAKSNILRTPITLDLAREV 340


>gi|46205665|ref|ZP_00048226.2| COG0593: ATPase involved in DNA replication initiation
           [Magnetospirillum magnetotacticum MS-1]
          Length = 322

 Score = 82.9 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 79/240 (32%), Gaps = 30/240 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSW-----PSWPSRVVILVGPSGSGKSCLANIWSDK 87
           P    ++     V  +   A    +              + +    G GK+ L +     
Sbjct: 22  PLDARLTVASFFVVRSNALAHAAAERVARSDGEGALYNPLYVHAGVGLGKTHLLHAAGHA 81

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127
           +R      I  + D  +                  +     ++L+D+  +      T+  
Sbjct: 82  AREAGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDLLILDDVQFIQGKSIQTEFG 141

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI-VKMF 186
           H +N++      +++ +   P         + SRL    VV+I   D+     ++  ++ 
Sbjct: 142 HTLNALIDSGRQVVVASDRPPTELEALDERVRSRLAGGLVVEIGGLDEGLRASILSARLE 201

Query: 187 ADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           A R       +   ++AY+ + +  +    E  V+++   A   G  +T   A   +++ 
Sbjct: 202 AVRHSHPNFEVSPAVSAYVARAITANGRDLEGAVNRLLAHATLTGAPVTVETAETAIRDL 261


>gi|91762459|ref|ZP_01264424.1| Chromosomal replication initiator protein [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718261|gb|EAS84911.1| Chromosomal replication initiator protein [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 470

 Score = 82.9 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 41/215 (19%)

Query: 40  RDDLLVHSAIEQAVRL-------IDSWPSWPSRVVILVGPSGSGKSCLAN---------- 82
            D+ +  ++ + A          I          + + G  G GK+ L N          
Sbjct: 133 FDNFITGTSNKLAYEASMKVSENISH-----YNPLYIYGGVGMGKTHLLNSIGLSLKEKN 187

Query: 83  ----IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFHIINS 132
               I +++       +I  +      +       +L++DI  ++  +    + FH  N+
Sbjct: 188 KVMFISAERFMYQFVKSIKSNDMVKFKEYFRNTDILLIDDIQFMNGKEAMQEEFFHTFNA 247

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM------F 186
           +    S ++++A   P         + SR     VV I  PD +   K++ +       F
Sbjct: 248 LLDKGSQVIISADRAPNKLSRIQDRIKSRFAGGLVVDIQKPDYELRNKIVRQKTEELNIF 307

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
              Q+ I +++  +I   +        +LV  ++ 
Sbjct: 308 YSNQVNISEEIQKFISTEIT---TSIRELVGAINR 339


>gi|256827819|ref|YP_003156547.1| chromosomal replication initiator protein DnaA [Desulfomicrobium
           baculatum DSM 4028]
 gi|256576995|gb|ACU88131.1| chromosomal replication initiator protein DnaA [Desulfomicrobium
           baculatum DSM 4028]
          Length = 449

 Score = 82.5 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 77/255 (30%), Gaps = 40/255 (15%)

Query: 26  EQLFFSFPR--------CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPS 73
            Q+                    DD +V      A               S  + L    
Sbjct: 98  RQMGLPMAHALPTQTVQNWRHQFDDFIVGPCNNLAYVASRSFCQDVQG--SDQLFLCSAP 155

Query: 74  GSGKSCLANIW----SDKSRSTRFSNIAKSLDSI---LIDTRKPVLLE--------DIDL 118
           G GK+ LA       + ++          S +     L+   K   +E        ++DL
Sbjct: 156 GLGKTHLAQAIGSEIARQTNRQHLRVCYLSGEEFASQLVMAIKAKAVEQFKARFRSNVDL 215

Query: 119 LDFNDTQLFH--------IIN---SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           L   D   F         ++N   S+      ++MT+   P        +L SR     +
Sbjct: 216 LLLEDVHFFQGKEKMQDELLNTLKSLQNQGRRVVMTSTFLPRELSDIDSNLLSRFAQGFM 275

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             I  PD      +I       Q+ +   +A  +  R++  +   E  +  +   A    
Sbjct: 276 AVIDKPDFQTRMGIIQAKAQASQVSMPGSVAELLAGRIKTDVRQLESCLKNIILKAKLLN 335

Query: 228 MGITRSLAAEVLKET 242
           M IT  LA E+L+  
Sbjct: 336 MDITMDLAWEILQNY 350


>gi|307942712|ref|ZP_07658057.1| chromosomal replication initiator protein DnaA [Roseibium sp.
           TrichSKD4]
 gi|307773508|gb|EFO32724.1| chromosomal replication initiator protein DnaA [Roseibium sp.
           TrichSKD4]
          Length = 494

 Score = 82.5 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 81/239 (33%), Gaps = 28/239 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  +   + + A+       +        + L    G GK+ L    + K+R++
Sbjct: 157 DPKYTFDTFVEGESNQLALAAARQVAAGGAVTFNPLFLHASVGLGKTHLMQAVAAKARAS 216

Query: 92  RFSNIAKSLDSI------LIDTRKPVLLED----IDLLDFNDTQLFH----------IIN 131
               +  + +         +  +  +  +D    IDLL  +D Q  H           +N
Sbjct: 217 GRKVLYLTAEHFMYRFVSALKAQSALAFKDTLRTIDLLLIDDMQFLHGKQVQQEFCHTLN 276

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM--FADR 189
           ++      +++ A   P         + SRL    VV I  PD      ++      A +
Sbjct: 277 ALIDGARQVIVAADRAPSELDSLDDRVRSRLSGGLVVGIHEPDFVLRRNILDSRVILARK 336

Query: 190 ---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
                 +  ++  YI + +  S    E  ++++          IT+ +A   L++  + 
Sbjct: 337 TYPNFEVPDQVLDYIARHVASSGRDLEGALNRLIAHNQLTNQPITQEMAELTLRDLVRS 395


>gi|154243959|ref|YP_001414917.1| chromosomal replication initiation protein [Xanthobacter
           autotrophicus Py2]
 gi|226735865|sp|A7IB67|DNAA_XANP2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|154158044|gb|ABS65260.1| chromosomal replication initiator protein DnaA [Xanthobacter
           autotrophicus Py2]
          Length = 506

 Score = 82.5 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 80/245 (32%), Gaps = 33/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRV-----VILVGPSGSGKSCLANIWSD 86
           P    ++ +  +V  +   A         S P        + L    G GK+ L    + 
Sbjct: 163 PLDARLTFETFVVGKSNSLAFAAAKQVAESAPGSAPVFNPLYLHAAVGLGKTHLLQAIA- 221

Query: 87  KSRSTRFSNIAKSLDS-------ILIDTRKPVLLED----IDLLDFNDTQLF-------- 127
           ++ +                     + T   +  +D    ID L  +D Q          
Sbjct: 222 RAGAVGGRRTTYLTAERFMYGFVAALKTHSAIAFKDALRTIDTLVIDDLQFLKGNNLQQE 281

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H +N++      +++ A   P         + SRL    VV+++  ++D   +++   
Sbjct: 282 FCHTLNALLDGGRQVVVAADCLPGELEHLDERVRSRLAGGLVVELAALEEDLRLEILKAR 341

Query: 186 F-----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +           +   +  ++ + + +S    +  ++K+       G  +T  +A   +K
Sbjct: 342 YQTLTEQHPGFAVPAPVLEFLARSVGQSGRDLDGALNKLLAFNQLTGEPVTLEMAENAVK 401

Query: 241 ETQQC 245
           +  + 
Sbjct: 402 DLIRP 406


>gi|157825988|ref|YP_001493708.1| chromosomal replication initiation protein [Rickettsia akari str.
           Hartford]
 gi|166214696|sp|A8GP75|DNAA_RICAH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157799946|gb|ABV75200.1| chromosomal replication initiation protein [Rickettsia akari str.
           Hartford]
          Length = 463

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 83/250 (33%), Gaps = 48/250 (19%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178

Query: 82  NI--W---------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF 121
           +   W               ++K        +      +  +  + V   +++DI  +  
Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICG 238

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D    + FH  N++   +  ++++    P         + SRL    V  +     +  
Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234
             ++        + I K +  ++  ++  ++   E  ++K+   +      IT     ++
Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358

Query: 235 AAEVLKETQQ 244
             ++L+  ++
Sbjct: 359 LRDLLRSNER 368


>gi|319405028|emb|CBI78638.1| chromosomal replication initiator protein DnaA [Bartonella sp. AR
           15-3]
          Length = 521

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 32/207 (15%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI 83
            F  P     + ++ +  ++   A+    S             + +    G GK+ L   
Sbjct: 172 VFGSPLDSRYTFENFVEGASNRVALAAARSIAEGHKSSLRFNPLFIYASVGLGKTHLLQA 231

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127
            +  +     S     L +     R  + + D            IDLL  +D Q      
Sbjct: 232 IAAGALKRLTSARVIYLTAEYFMWRFAMAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 291

Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                 H++N +      +++ A   P         + SRL+    ++I  PD +   ++
Sbjct: 292 IQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIETPDYEMRLEM 351

Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203
           + +     Q     + I  ++ AYI +
Sbjct: 352 LRQRLKIAQQDDNMVMISDEILAYIAK 378


>gi|239947628|ref|ZP_04699381.1| chromosomal replication initiator protein DnaA [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921904|gb|EER21928.1| chromosomal replication initiator protein DnaA [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 463

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 83/250 (33%), Gaps = 48/250 (19%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF 121
           +   W  K  +     I  S +  +    K +                  +++DI  +  
Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D    + FH  N++   +  ++++    P         + SRL    V  +     +  
Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234
             ++        + I K +  ++  ++  ++   E  ++K+   +      IT     ++
Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358

Query: 235 AAEVLKETQQ 244
             ++L+  ++
Sbjct: 359 LRDLLRSNER 368


>gi|168698781|ref|ZP_02731058.1| initiation of chromosome replication [Gemmata obscuriglobus UQM
           2246]
          Length = 504

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 80/230 (34%), Gaps = 27/230 (11%)

Query: 39  SRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCLAN-IWS---DKSRS 90
           S  D +       A       ++      +  +++ GP G+GK+ L   +++    +S  
Sbjct: 166 SLADFVSGPCNRVAHASALSAVEEPGQGANP-LVIHGPVGTGKTHLLEGVYAGLKRQSDQ 224

Query: 91  TRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLD---FNDTQLFHIINS 132
                 A+   +  +   +                +LL+D+  L        +  H  ++
Sbjct: 225 RPCYVTAEEFTTKFVQASRLGKMSQFRRQFRECSVLLLDDLHFLATKKATQEEFLHTFDA 284

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           +      +++T    P      +P+L  RL    V  +  PD +   +++ K        
Sbjct: 285 LIADGRQVVVTTDCHPRLADELMPELLDRLLGGAVWGLQPPDPETRLEILRKKSCGANPP 344

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I + +   +   +  ++   E  ++ + + A   G  +  + A E L + 
Sbjct: 345 IPENVLKTLANTLRGNVRELEGAINSVRHYAKVTGRPVDLATAREALGDL 394


>gi|157964743|ref|YP_001499567.1| chromosomal replication initiation protein [Rickettsia massiliae
           MTU5]
 gi|167016904|sp|A8F284|DNAA_RICM5 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157844519|gb|ABV85020.1| Chromosomal replication initiator protein DnaA [Rickettsia
           massiliae MTU5]
          Length = 463

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 83/250 (33%), Gaps = 48/250 (19%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF 121
           +   W  K  +     I  S +  +    K +                  +++DI  +  
Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D    + FH  N++   +  ++++    P         + SRL    V  +     +  
Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234
             ++        + I K +  ++  ++  ++   E  ++K+   +      IT     ++
Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358

Query: 235 AAEVLKETQQ 244
             ++L+  ++
Sbjct: 359 LRDLLRSNER 368


>gi|67458756|ref|YP_246380.1| chromosomal replication initiation protein [Rickettsia felis
           URRWXCal2]
 gi|75536787|sp|Q4UMJ3|DNAA_RICFE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|67004289|gb|AAY61215.1| Chromosomal replication initiator protein DnaA [Rickettsia felis
           URRWXCal2]
          Length = 463

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 83/250 (33%), Gaps = 48/250 (19%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF 121
           +   W  K  +     I  S +  +    K +                  +++DI  +  
Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D    + FH  N++   +  ++++    P         + SRL    V  +     +  
Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234
             ++        + I K +  ++  ++  ++   E  ++K+   +      IT     ++
Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358

Query: 235 AAEVLKETQQ 244
             ++L+  ++
Sbjct: 359 LRDLLRSNER 368


>gi|238650715|ref|YP_002916568.1| chromosomal replication initiation protein [Rickettsia peacockii
           str. Rustic]
 gi|259645260|sp|C4K1R9|DNAA_RICPU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|238624813|gb|ACR47519.1| chromosomal replication initiation protein [Rickettsia peacockii
           str. Rustic]
          Length = 463

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 84/250 (33%), Gaps = 48/250 (19%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
               + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 127 DARFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178

Query: 82  NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121
           +   W     + SR   + +  K +   +   R                ++++DI  +  
Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D    + FH  N++   +  ++++    P         + SRL    V  +     +  
Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234
             ++        + I K +  ++  ++  ++   E  ++K+   +      IT     ++
Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358

Query: 235 AAEVLKETQQ 244
             ++L+  ++
Sbjct: 359 LRDLLRSNER 368


>gi|332701174|ref|ZP_08421262.1| Chromosomal replication initiator protein dnaA [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551323|gb|EGJ48367.1| Chromosomal replication initiator protein dnaA [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 454

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 28/229 (12%)

Query: 39  SRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTR 92
           S DD +V  + + A           +    + +   +G GK+ L     +   D++RS  
Sbjct: 124 SFDDFVVGPSNDLAYAAAQGVVRNDFSPGPLFISSSAGLGKTHLIQAIGHAAQDRTRSKS 183

Query: 93  FSNIAKSLDSILI-------------------DTRKPVLLEDIDLLDFN---DTQLFHII 130
            +    + +                       +    +LLEDI  L        +L   I
Sbjct: 184 LTLRYLTAEEFATKMLMALNAKDMSRFKTQFREGIDILLLEDIHFLQGKAMFQDELLSTI 243

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
            ++ +  S ++ T+   P         L SR  +  +  I +PD D   +++       Q
Sbjct: 244 KALQERGSRVVFTSSFLPKELSNVDTHLVSRFCSGFLTVIDMPDFDMRRRIVQHKSRQLQ 303

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + +   +A  + + +   +   E  +  +   A      I+  +A +VL
Sbjct: 304 VNVPDDVAELLAESITCDIRQLESCLQNLVLKARLLNERISLDMARDVL 352


>gi|120602039|ref|YP_966439.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris DP4]
 gi|120562268|gb|ABM28012.1| DnaA family protein [Desulfovibrio vulgaris DP4]
          Length = 504

 Score = 82.1 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 84/272 (30%), Gaps = 51/272 (18%)

Query: 18  NDQPKNKEEQLFFSFPRCL--------GISRDDLLVHSAIEQAVR----------LIDSW 59
           + + +  +EQL                  S DD +V    E A            + D  
Sbjct: 137 SAETQQAQEQLGLPLDWAPVPQSRTNWRFSFDDFIVGPNNELACAAARGMCRDGLMTD-- 194

Query: 60  PSWPSRVVILVGPSGSGKSCLANIW-------------------SDKSRSTRFSNIAKSL 100
                  + L    G GK+ L +                     +++  S   + +    
Sbjct: 195 ------TLFLSSGPGLGKTHLLHAVGRSLCESSNRSNPNVAYLTAEEFASRLIAALKARD 248

Query: 101 DSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                   + V   LLED+  L   +    ++   + ++    S ++ ++          
Sbjct: 249 VERFKARYRDVDVLLLEDVHFLQGKEKMQDEVLATVKALQSRGSRIVFSSSFAARDLKNV 308

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR  +  +  I  PD D   +++ +     Q+ +   +   + +R+   +   E 
Sbjct: 309 DNQLVSRFCSGFLAGIERPDFDTRRRILREKARIYQVMLPDNVTDLLAERISTDVRQIES 368

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            +  +   A      I+  +A E++    Q +
Sbjct: 369 CLHNLILKAKLLNRQISLEMAFEIIGNYAQAE 400


>gi|50364816|ref|YP_053241.1| chromosomal replication initiator protein [Mesoplasma florum L1]
 gi|61212578|sp|Q6F2A9|DNAA_MESFL RecName: Full=Chromosomal replication initiator protein DnaA
 gi|50363372|gb|AAT75357.1| chromosomal replication initiator protein [Mesoplasma florum L1]
          Length = 443

 Score = 82.1 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 76/214 (35%), Gaps = 29/214 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91
              ++ ++ +V S+ +QA     +  + P      + + G SG GK+ L     +++   
Sbjct: 103 ENALTFENFIVGSSNKQANLAAKNVVANPGMSFNPLFIYGDSGLGKTHLLQAIKNQAELN 162

Query: 92  RFSNIAKSLDSIL---------------------IDTRKPVLLEDIDLLDFNDTQ---LF 127
               +  + +                        I++ +  +L+D+  L   D      F
Sbjct: 163 GKKVLYLTSEEFTKRIVNALNKGDLSEIEELKTEINSNEFFILDDVQFLSKKDKTNEFFF 222

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           +IIN+  +    L+ ++   P         + +R  +     I+  D    + +I     
Sbjct: 223 NIINNFTENGKQLVFSSDKTPELLNGFDKRMITRFNSGLSTPINALDIPTAKLIIEAEIK 282

Query: 188 DRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            + +   I +    Y+ Q     +   + LV+++
Sbjct: 283 KQGLKQKIKEDAVVYLAQNFSDDVRKIKGLVNRL 316


>gi|311234387|gb|ADP87241.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris RCH1]
          Length = 504

 Score = 81.7 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 84/272 (30%), Gaps = 51/272 (18%)

Query: 18  NDQPKNKEEQLFFSFPRCL--------GISRDDLLVHSAIEQAVR----------LIDSW 59
           + + +  +EQL                  S DD +V    E A            + D  
Sbjct: 137 SAETQQAQEQLGLPLDWAPVPQSRTNWRFSFDDFIVGPNNELACAAARGMCRDGLMTD-- 194

Query: 60  PSWPSRVVILVGPSGSGKSCLANIW-------------------SDKSRSTRFSNIAKSL 100
                  + L    G GK+ L +                     +++  S   + +    
Sbjct: 195 ------TLFLSSGPGLGKTHLLHAVGRSLCESSNRSNPNVAYLTAEEFASRLIAALKARD 248

Query: 101 DSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                   + V   LLED+  L   +    ++   + ++    S ++ ++          
Sbjct: 249 VERFKARYRDVDVLLLEDVHFLQGKEKMQDEVLATVKALQSRGSRIVFSSSFAARDLKNV 308

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR  +  +  I  PD D   +++ +     Q+ +   +   + +R+   +   E 
Sbjct: 309 DNQLVSRFCSGFLAGIERPDFDTRRRILREKARIYQVMLPDNVTDLLAERISTDVRQIES 368

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            +  +   A      I+  +A E++    Q +
Sbjct: 369 CLHNLILKAKLLNRQISLEMAFEIIGNYAQAE 400


>gi|51473779|ref|YP_067536.1| chromosomal replication initiation protein [Rickettsia typhi str.
           Wilmington]
 gi|61212556|sp|Q68WD8|DNAA_RICTY RecName: Full=Chromosomal replication initiator protein DnaA
 gi|51460091|gb|AAU04054.1| chromosomal replication initiator protein DnaA [Rickettsia typhi
           str. Wilmington]
          Length = 463

 Score = 81.7 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 83/248 (33%), Gaps = 36/248 (14%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCLANI 83
                     + D+ +V +  E A          S   + S  + L G  G GK+ L + 
Sbjct: 125 TLDL----RFTFDNFVVGAPNELAYAAARAVAESSGAVFESNPLFLYGGVGLGKTHLMHA 180

Query: 84  --W---------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND 123
             W               ++K        +      +  +  + V   +++DI  +   D
Sbjct: 181 IGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICGKD 240

Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
               + FH  N++   +  ++++    P         + SRL    V  +     +    
Sbjct: 241 STQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELRLG 300

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SLAA 236
           ++        + I K +  ++  ++  ++   E  ++K+   +      IT     ++  
Sbjct: 301 ILESKIEQMNVKIPKDVINFLASKIVSNVRELEGALNKVIAHSNFTLKAITLENTQNILR 360

Query: 237 EVLKETQQ 244
           ++L+  ++
Sbjct: 361 DLLRSNER 368


>gi|71083115|ref|YP_265834.1| chromosomal replication initiator protein [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|71062228|gb|AAZ21231.1| Chromosomal replication initiator protein [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 444

 Score = 81.7 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 41/215 (19%)

Query: 40  RDDLLVHSAIEQAVRL-------IDSWPSWPSRVVILVGPSGSGKSCLAN---------- 82
            D+ +  ++ + A          I          + + G  G GK+ L N          
Sbjct: 107 FDNFITGTSNKLAYEASMKVSENISH-----YNPLYIYGGVGMGKTHLLNSIGLSLKEKN 161

Query: 83  ----IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFHIINS 132
               I +++       +I  +      +       +L++DI  ++  +    + FH  N+
Sbjct: 162 KVMFISAERFMYQFVKSIKSNDMVKFKEYFRNTDILLIDDIQFMNGKEAMQEEFFHTFNA 221

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM------F 186
           +    S ++++A   P         + SR     VV I  PD +   K++ +       F
Sbjct: 222 LLDKGSQVIISADRAPNKLSRIQDRIKSRFAGGLVVDIQKPDYELRSKIVKQKTEELNIF 281

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
              Q+ I +++  +I   +        +LV  ++ 
Sbjct: 282 YSNQVNISEEIQKFISTEIT---TSIRELVGAINR 313


>gi|229586943|ref|YP_002845444.1| chromosomal replication initiation protein [Rickettsia africae
           ESF-5]
 gi|259645259|sp|C3PP41|DNAA_RICAE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|228021993|gb|ACP53701.1| Chromosomal replication initiator protein DnaA [Rickettsia africae
           ESF-5]
          Length = 463

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 85/250 (34%), Gaps = 48/250 (19%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178

Query: 82  NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121
           +   W     + SR   + +  K +   +   R                ++++DI  +  
Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D    + FH  N++   +  ++++    P         + SRL    V  +     +  
Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234
             ++        + I K +  ++  ++  ++   E  ++K+   +      IT     ++
Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358

Query: 235 AAEVLKETQQ 244
             ++L+  ++
Sbjct: 359 LRDLLRSNER 368


>gi|15892839|ref|NP_360553.1| chromosomal replication initiation protein [Rickettsia conorii str.
           Malish 7]
 gi|157828772|ref|YP_001495014.1| chromosomal replication initiation protein [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165933500|ref|YP_001650289.1| chromosomal replication initiation protein [Rickettsia rickettsii
           str. Iowa]
 gi|20137861|sp|Q92H56|DNAA_RICCN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|166214699|sp|A8GSY1|DNAA_RICRS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189044601|sp|B0BYF7|DNAA_RICRO RecName: Full=Chromosomal replication initiator protein DnaA
 gi|15620024|gb|AAL03454.1| chromosomal replication initiator protein DnaA [Rickettsia conorii
           str. Malish 7]
 gi|157801253|gb|ABV76506.1| chromosomal replication initiation protein [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|165908587|gb|ABY72883.1| chromosomal replication initiator protein [Rickettsia rickettsii
           str. Iowa]
          Length = 463

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 85/250 (34%), Gaps = 48/250 (19%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178

Query: 82  NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121
           +   W     + SR   + +  K +   +   R                ++++DI  +  
Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D    + FH  N++   +  ++++    P         + SRL    V  +     +  
Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234
             ++        + I K +  ++  ++  ++   E  ++K+   +      IT     ++
Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358

Query: 235 AAEVLKETQQ 244
             ++L+  ++
Sbjct: 359 LRDLLRSNER 368


>gi|46580657|ref|YP_011465.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|71151796|sp|Q729U6|DNAA_DESVH RecName: Full=Chromosomal replication initiator protein DnaA
 gi|46450076|gb|AAS96725.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 491

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 84/272 (30%), Gaps = 51/272 (18%)

Query: 18  NDQPKNKEEQLFFSFPRCL--------GISRDDLLVHSAIEQAVR----------LIDSW 59
           + + +  +EQL                  S DD +V    E A            + D  
Sbjct: 124 SAETQQAQEQLGLPLDWAPVPQSRTNWRFSFDDFIVGPNNELACAAARGMCRDGLMTD-- 181

Query: 60  PSWPSRVVILVGPSGSGKSCLANIW-------------------SDKSRSTRFSNIAKSL 100
                  + L    G GK+ L +                     +++  S   + +    
Sbjct: 182 ------TLFLSSGPGLGKTHLLHAVGRSLCESSNRSNPNVAYLTAEEFASRLIAALKARD 235

Query: 101 DSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                   + V   LLED+  L   +    ++   + ++    S ++ ++          
Sbjct: 236 VERFKARYRDVDVLLLEDVHFLQGKEKMQDEVLATVKALQSRGSRIVFSSSFAARDLKNV 295

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SR  +  +  I  PD D   +++ +     Q+ +   +   + +R+   +   E 
Sbjct: 296 DNQLVSRFCSGFLAGIERPDFDTRRRILREKARIYQVMLPDNVTDLLAERISTDVRQIES 355

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            +  +   A      I+  +A E++    Q +
Sbjct: 356 CLHNLILKAKLLNRQISLEMAFEIIGNYAQAE 387


>gi|34581452|ref|ZP_00142932.1| chromosomal replication initiator protein DnaA [Rickettsia sibirica
           246]
 gi|28262837|gb|EAA26341.1| chromosomal replication initiator protein DnaA [Rickettsia sibirica
           246]
          Length = 463

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 85/250 (34%), Gaps = 48/250 (19%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 127 DIRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178

Query: 82  NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121
           +   W     + SR   + +  K +   +   R                ++++DI  +  
Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            D    + FH  N++   +  ++++    P         + SRL    V  +     +  
Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234
             ++        + I K +  ++  ++  ++   E  ++K+   +      IT     ++
Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358

Query: 235 AAEVLKETQQ 244
             ++L+  ++
Sbjct: 359 LRDLLRSNER 368


>gi|257067224|ref|YP_003153479.1| chromosomal replication initiator protein DnaA [Brachybacterium
           faecium DSM 4810]
 gi|256558042|gb|ACU83889.1| chromosomal replication initiator protein DnaA [Brachybacterium
           faecium DSM 4810]
          Length = 565

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 81/241 (33%), Gaps = 36/241 (14%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
               + D  ++ S+      A   +   P+     + + G SG GK+ L +     ++S 
Sbjct: 219 NSKYTFDTFVIGSSNRFAQAAASAVAETPAKAYNPLFIYGGSGLGKTHLLHAVGHYAQSL 278

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLLDFND--------------------------TQ 125
               + + ++S          ++        +                            
Sbjct: 279 YPDVVVRYVNSEEFTNEFINSVQSGQFGKAQEFQRRYRDIDILLIDDIQFLQRAPETMEA 338

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            FH  N+++  D  +++T+   P   G     + SR +   +  +  PD +    ++ K 
Sbjct: 339 FFHTFNTLYNSDKQIVITSDLPPKELGGFEDRMRSRFEMGLMTDVQPPDLETRIAILRKK 398

Query: 186 -FADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
              +    +  ++  YI   +    R L  A   V  +   +LSR   +  +LA  VLK+
Sbjct: 399 VAQENTGEVPHEVLEYIASHIATNIRELEGALIRVQAL--HSLSRQ-PMDVTLAESVLKD 455

Query: 242 T 242
            
Sbjct: 456 L 456


>gi|220920055|ref|YP_002495356.1| chromosomal replication initiation protein [Methylobacterium
           nodulans ORS 2060]
 gi|219944661|gb|ACL55053.1| chromosomal replication initiator protein DnaA [Methylobacterium
           nodulans ORS 2060]
          Length = 499

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 30/240 (12%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLID----SWPSWP-SRVVILVGPSGSGKSCLANIWSDK 87
           P    ++    +V  +   A    +         P    +      G GK+ L +     
Sbjct: 158 PLDPRLTFQSFVVGRSNALAHAAAERVAAHDGGGPVYNPLYFHAGVGLGKTHLLHAIGHA 217

Query: 88  SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127
           ++      I  + D  +                  +     ++L+D+  +       +  
Sbjct: 218 AKEVGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDVLILDDVQFIQGRSIQAEFG 277

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           H +N++      ++  A   P         + SRL    VV+I   D+     ++     
Sbjct: 278 HTLNALIDAGRQVVAAADRPPTELESLDERVRSRLAGGLVVEIGTLDEALRATILQSRLE 337

Query: 188 DRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +       +   +A Y+ + +  +    E  V+++   A   G  +T   A   +++ 
Sbjct: 338 AVRATHPAFEVSPAVAEYVAKAITANGRDLEGAVNRLLAHATLTGAPVTLETAETAIRDL 397


>gi|258646404|ref|ZP_05733873.1| ATPase [Dialister invisus DSM 15470]
 gi|260403806|gb|EEW97353.1| ATPase [Dialister invisus DSM 15470]
          Length = 541

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 91/253 (35%), Gaps = 44/253 (17%)

Query: 38  ISRDDLLVHSAIEQAVRL-------IDSWPSWPS-------------RVVILVGPSGSGK 77
            + D+ +  +  E A +         + +   P                + + GPSG GK
Sbjct: 190 YTFDNFVHGNCNEIAFQSAHAIALSCEEYTDSPDTNYSKKKPEASNYNPLFIYGPSGLGK 249

Query: 78  SCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDID 117
           + L    S      +   +     +++  + LI++ +                +L++DI 
Sbjct: 250 THLLLAISNYVKTHRPDLSVLFVTSENFTNELIESIRSGKMQEFREKYRTVDYLLIDDIQ 309

Query: 118 LLDFNDT----QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             +        ++F+  N+I   D+ ++ T+   P         L +R  +  +  IS P
Sbjct: 310 FFNGTKESSRMEIFNTFNAIADNDNYIITTSDRTPSDLKDFHERLITRFSSGMIAHISPP 369

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           D +    ++ K      I + +++ ++I   +  S+   E    ++      + + +T  
Sbjct: 370 DFEICSIILQKKAERSHIDMSEEVISFIAGNVNSSVRELEGAFKQVVGYCQIKNVPLTLE 429

Query: 234 LAAEVLKETQQCD 246
            A + L +  + D
Sbjct: 430 NARDALADIIKVD 442


>gi|190890027|ref|YP_001976569.1| chromosomal replication initiator protein [Rhizobium etli CIAT 652]
 gi|190695306|gb|ACE89391.1| chromosomal replication initiator protein [Rhizobium etli CIAT 652]
          Length = 516

 Score = 81.7 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+   A+     I    S   R   + +    G GK+ L    ++ 
Sbjct: 174 PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGSGAVRFNPLFVHSTVGLGKTHLLQAIANA 233

Query: 88  S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127
           +    R+ R   +         +  I     + L+D    IDLL  +D Q          
Sbjct: 234 AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 293

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184
             H++N +      +++ A   P       P + SRL+    +++  PD +  LE +  +
Sbjct: 294 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRR 353

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVF 211
           + A RQ     ++ A ++Q + R++  
Sbjct: 354 LAAARQEDPSLEIPADLLQHVARNITA 380


>gi|257464820|ref|ZP_05629191.1| chromosomal replication initiation protein [Actinobacillus minor
           202]
 gi|257450480|gb|EEV24523.1| chromosomal replication initiation protein [Actinobacillus minor
           202]
          Length = 446

 Score = 81.7 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 85/240 (35%), Gaps = 35/240 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                 D+ +   + + A  +    +            L   +G GK+ L +   +    
Sbjct: 109 DPTQRFDNFVQGRSNQLAKAVAQQVVSDLGESHCNPFSLYASTGLGKTHLLHAIGNALQK 168

Query: 88  ----------SRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDFN---DTQ 125
                          + +I K++++   +  K          ++++DI  L        +
Sbjct: 169 KDPSLRVLYIHSERFYRDILKAINTNSNEADKLKKFYRSLDVLMIDDIQFLADKPKVQEE 228

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H+ N++ +    +++T+  FP +       + SRL       I  P+ +    ++ K 
Sbjct: 229 FLHLFNALFEQKKQIVLTSNVFPKNIERIDDAIKSRLSWGISSTIEPPELETRVAILRKK 288

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSR--GMGITRSLAAEVLKET 242
             +R   I ++ A Y++ +  R+     +L   ++ + A  +     IT     E L++ 
Sbjct: 289 AEERGADISEE-ATYLMGQKLRTH--VRELEGALNRVIAWQKLTHRPITVDAVRETLRDM 345


>gi|241895507|ref|ZP_04782803.1| DNA-directed DNA replication initiator protein [Weissella
           paramesenteroides ATCC 33313]
 gi|241871253|gb|EER75004.1| DNA-directed DNA replication initiator protein [Weissella
           paramesenteroides ATCC 33313]
          Length = 467

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 77/258 (29%), Gaps = 54/258 (20%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87
                 +  +      +A  +  +    P      +++ G  G GK+ L     +K    
Sbjct: 131 NPEFRFETFVSSDENREAYAVAQAVADKPGTQWNPLLIYGGVGLGKTHLMQAIGNKVLER 190

Query: 88  ---------SRSTRFSNIAKSLDSILIDTRK---------PVLLEDIDLLDFND---TQL 126
                    +     ++  ++L     +T            ++++D+  L   +    + 
Sbjct: 191 TPNANVKFITTEDFINDFTEALRRGQKETEAFKREYRSTDLLMVDDVQFLAGKEKIQEEF 250

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F+  N+I + +  +++T+   P         L +R        I+ PD      ++    
Sbjct: 251 FNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILRNKS 310

Query: 187 ADRQIFIDKKLAAYIVQRME---RSL--------------------VFAEKLVDKMDNLA 223
               + I   +   I   ++   R L                      A  +++ M+   
Sbjct: 311 DLENLSIPNDVIDEIAAAVDTNVRDLEGVFNQVVGKMRFSNVPVTVETARTILETMN--- 367

Query: 224 LSRGMGITRSLAAEVLKE 241
             R   IT  +  E +  
Sbjct: 368 FKRQRAITIPIIQEAVAN 385


>gi|114568555|ref|YP_755235.1| chromosomal replication initiator protein DnaA [Maricaulis maris
           MCS10]
 gi|114339017|gb|ABI64297.1| chromosomal replication initiator protein DnaA [Maricaulis maris
           MCS10]
          Length = 482

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 39/246 (15%)

Query: 33  PRCLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
           P     S D   V  A E A      ++ +    P   V   G  G GK+ L +  +  +
Sbjct: 141 PGDARFSFDSFRVGPANEVAAAAARTMVGASTP-PFNPVFFYGDYGVGKTHLLHAVASAA 199

Query: 89  RSTRFSNIAKSLDSILIDTR--------------------KPVLLEDIDLLDF---NDTQ 125
           R+      A  L +    +                       +L++D+  +      + +
Sbjct: 200 RNGSRPRKALYLTAEEFLSGFVTAMKARDTISFKETVRGVDVLLIDDVHFIAGKPKTEDE 259

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H I ++   +  +++ +   P    +    L S L       +  PD D   +++   
Sbjct: 260 FLHTIAALVAENKQVVLASHKPPAELQMQDERLRSLLTGGLSCPLGKPDLDLRRQILDCK 319

Query: 186 FADRQIF-----IDKKLAAYIVQRM---ERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
            A          + + +  ++  R+    R +      V      AL  G  +T  + + 
Sbjct: 320 IAQATCHYPTFDVSEAVRDFLAARITSSPREMEGVLNNVIC--RTALI-GQPVTMEVVST 376

Query: 238 VLKETQ 243
            L+E  
Sbjct: 377 ALRELS 382


>gi|223983629|ref|ZP_03633807.1| hypothetical protein HOLDEFILI_01088 [Holdemania filiformis DSM
           12042]
 gi|223964396|gb|EEF68730.1| hypothetical protein HOLDEFILI_01088 [Holdemania filiformis DSM
           12042]
          Length = 458

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW---------- 84
            + D+ +V  +  ++     +    P +    + + G SG GK+ L N            
Sbjct: 120 YTFDNFVVGGSNRESHSAALACAYNPGQFFNPLFIYGNSGLGKTHLLNAIGNYVSEHAPD 179

Query: 85  --------SDKSRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQLFHIIN 131
                    D   +   S     +     +      +L++DI  L   +      F+I N
Sbjct: 180 KKVYYTTSEDFVNAVVNSIKNGQIQEFKEEMNDLDVLLVDDIQFLAGKEKSHETFFYIFN 239

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD----FLEKVIVKMFA 187
            +      + +T+   P         L SR  +   V +  P+ +     L+  + K   
Sbjct: 240 ELVNNKKQICLTSDRHPTEIKGLEERLISRFSSGLSVGVDSPEFETSVAILKVKLEKQSV 299

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
           D  I ID  + AYI     + +   E  ++++   ++
Sbjct: 300 DPSI-IDDDVLAYIASNFSQDVRKLEGALNRLLFYSI 335


>gi|150019914|ref|YP_001305268.1| chromosomal replication initiator protein DnaA [Thermosipho
           melanesiensis BI429]
 gi|166215366|sp|A6LIY2|DNAA_THEM4 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|149792435|gb|ABR29883.1| chromosomal replication initiator protein DnaA [Thermosipho
           melanesiensis BI429]
          Length = 437

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 34/199 (17%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLANI------- 83
           P     + ++L+V    + A  +       P     + L    G GK+ LA         
Sbjct: 98  PLNPKYTFENLVVGEFNKFAYNVFLEASKNPGFYNPIFLYSGVGLGKTHLAQALGNYLLE 157

Query: 84  --------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQL 126
                         + ++  S   +                ++++DI     +    T+L
Sbjct: 158 TDPDMKVAYLTSEEFMNEMFSAIKNGNIDEFREKYRKKADILIIDDIQFLIGIKSAQTEL 217

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL----KAATVVKISLPDDDFLEKVI 182
           FH  N+IH+    +++ +   P      L D  SR+    +   +VKI  P  + L K+ 
Sbjct: 218 FHTFNTIHEAGKQIIICSDRTPQE----LKDFHSRMISRFQMGLLVKIEKPSSEDLFKIG 273

Query: 183 VKMFADRQIFIDKKLAAYI 201
            K+   + + ID ++  YI
Sbjct: 274 KKISEMKNVEIDDEIIKYI 292


>gi|38257685|sp|Q8UIH1|DNAA_AGRT5 RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 487

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+   A+     I    +   R   + +    G GK+ L    ++ 
Sbjct: 142 PLDTRFTFDTFVEGSSNRVALAAAKTIAEAGAGAVRFNPLFIHAGVGLGKTHLLQAIANA 201

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +  +  +     L +     R    + D            IDLL  +D Q          
Sbjct: 202 AIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKDTLRNIDLLVIDDMQFLQGKMIQHE 261

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P       P + SRL+    ++I  PD D   +++ + 
Sbjct: 262 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGMAIEIEGPDYDMRYEMLNRR 321

Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211
             + RQ     +++  I+  + +S+  
Sbjct: 322 MGSARQDDPSFEISDEILTHVAKSVTA 348


>gi|294668100|ref|ZP_06733207.1| ribosomal subunit interface protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309808|gb|EFE51051.1| ribosomal subunit interface protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 172

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              ++++DI  +   D    + F++ N  H     L++T    P         L SR   
Sbjct: 19  YDLLIIDDIQFIKGKDRTMEEFFYLYNHFHTEKKQLILTCDVLPAKIEDMDDRLKSRFSW 78

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDK 218
              +++  P+ +    ++ K      + + +  A +I + +    R L  A K V+ 
Sbjct: 79  GLTLELEPPEFEMRVAILQKKAESAGVTLREDAAFFIAKHIRSNVRELEGAFKRVEA 135


>gi|239907716|ref|YP_002954457.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           magneticus RS-1]
 gi|239797582|dbj|BAH76571.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           magneticus RS-1]
          Length = 465

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 91/263 (34%), Gaps = 40/263 (15%)

Query: 16  QKNDQPKNKEEQLFFS--------FPRCLGISRDDLLVHSAIEQAVR----LIDSWPSWP 63
           Q+   P+     L                  S D+ +V  + E A      + D   S  
Sbjct: 104 QRPAGPRPVAAPLTLPVAPSAPPALADRFRFSYDEFVVGPSNEMAYAASKGICDL--SLS 161

Query: 64  SRVVILVGPSGSGKSCLANI---------------WSDKSRSTRFSNIAKSLDSILIDTR 108
           +  + +    G GK+ L                   +  S     + +  ++ +  ++  
Sbjct: 162 AEQLFISSAPGLGKTHLIQAMGRRILGGQPGRQPRVAYLSAEEFANRLVMAIKTKQVEQF 221

Query: 109 KPVLLEDIDLLDFNDTQLF--------HIIN---SIHQYDSSLLMTARTFPVSWGVCLPD 157
           K    E++D+L   D   F         ++N   +++     L+ T+   P         
Sbjct: 222 KAAFRENVDVLLLEDVHFFRDKPRIQDELLNTLKALNARGCRLVFTSSFLPKELSGLDSQ 281

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR+ +  +  I  PD D   +++ +  A  Q+ + ++++  +  ++   +   E  + 
Sbjct: 282 LLSRINSGFLAVIDKPDLDMRRRILARKAAVHQVLLPEEVSTLLADKLPSDVRQLESCLQ 341

Query: 218 KMDNLALSRGMGITRSLAAEVLK 240
            +   A      I+  LA +VL+
Sbjct: 342 NLVLKAKLLNCRISVDLAWDVLR 364


>gi|325291758|ref|YP_004277622.1| chromosomal replication initiation protein [Agrobacterium sp.
           H13-3]
 gi|325059611|gb|ADY63302.1| chromosomal replication initiation protein [Agrobacterium sp.
           H13-3]
          Length = 487

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+   A+     I    +   R   + +    G GK+ L    ++ 
Sbjct: 142 PLDTRFTFDTFVEGSSNRVALAAAKTIAEAGAGAVRFNPLFIHAGVGLGKTHLLQAIANA 201

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +  +  +     L +     R    + D            IDLL  +D Q          
Sbjct: 202 AIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKDTLRNIDLLVIDDMQFLQGKMIQHE 261

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P       P + SRL+    ++I  PD D   +++ + 
Sbjct: 262 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGMAIEIEGPDYDMRYEMLNRR 321

Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211
             + RQ     +++  I+  + +S+  
Sbjct: 322 MGSARQDDPSFEISDEILTHVAKSVTA 348


>gi|240950075|ref|ZP_04754377.1| chromosomal replication initiation protein [Actinobacillus minor
           NM305]
 gi|240295450|gb|EER46205.1| chromosomal replication initiation protein [Actinobacillus minor
           NM305]
          Length = 446

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 85/240 (35%), Gaps = 35/240 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
                 D+ +   + + A  +    +            L   +G GK+ L +   +    
Sbjct: 109 DPTQRFDNFVQGRSNQLAKAVAQQVVSDLGESHCNPFSLYASTGLGKTHLLHAIGNALQK 168

Query: 88  ----------SRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDFN---DTQ 125
                          + +I K++++   +  K          ++++DI  L        +
Sbjct: 169 KDPSLRVLYIHSERFYRDILKAINTNSNEADKLKKFYRSLDVLMIDDIQFLADKPKVQEE 228

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H+ N++ +    +++T+  FP +       + SRL       I  P+ +    ++ K 
Sbjct: 229 FLHLFNALFEQKKQIVLTSNVFPKNIERIDDAIKSRLSWGISSTIEPPELETRVAILRKK 288

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSR--GMGITRSLAAEVLKET 242
             +R   I ++ A Y++ +  R+     +L   ++ + A  +     IT     E L++ 
Sbjct: 289 AEERGADISEE-ATYLMGQKLRTH--VRELEGALNRVIAWQKLTHRPITVDAVRETLRDM 345


>gi|282891915|ref|ZP_06300394.1| hypothetical protein pah_c200o074 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498175|gb|EFB40515.1| hypothetical protein pah_c200o074 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 448

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 82/238 (34%), Gaps = 30/238 (12%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD---- 86
                 +  +           A+ +    P     ++ + G  G GK+ + +        
Sbjct: 114 NENYRFETFIEGPTNMFVKSAAIGVATR-PGQSYNLLFIHGGVGLGKTHILHSIGHYVKD 172

Query: 87  ---------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF---------- 127
                     +     +++  SL +  +D  K     D+D+L  +D Q            
Sbjct: 173 HHKKLRVQCITTEAFINDLVDSLRNKSVDKMKRFYRSDVDVLLVDDIQFLQNRLNFEEEF 232

Query: 128 -HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
            H   ++      +++T+   P    +    L +R++   V  + +PD +    ++    
Sbjct: 233 CHTFETLINQKKQIVITSDKPPSQLKLS-ERLIARMEWGLVAHVGMPDLETRVAILQHKA 291

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             + + I   +A +I + +  ++   E  V+++        + IT  L  + L+E  Q
Sbjct: 292 QQKGLEIPNNVAFFIAEHIYNNVRQLEGAVNRLCAHCKLLDLNITEELVEKTLREMMQ 349


>gi|319936678|ref|ZP_08011091.1| chromosomal replication initiator protein dnaA [Coprobacillus sp.
           29_1]
 gi|319808235|gb|EFW04800.1| chromosomal replication initiator protein dnaA [Coprobacillus sp.
           29_1]
          Length = 444

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 31/236 (13%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWSD-------- 86
           +  ++ +V ++   A     +    P      + +   SG GK+ L N   +        
Sbjct: 105 LKFENFVVGNSNRIAQNASLAVAMKPGISYSPLFIHSNSGLGKTHLLNAIGNYAKSKDPF 164

Query: 87  -----KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLDFNDTQ---LFHIIN 131
                 +     +   +SL +  ID           +L++DI  +   ++     F+I N
Sbjct: 165 TKVLFTTSENFVNEYIQSLSNHTIDEFNYKYRHIDILLIDDIQFMATKESSSEIFFNIFN 224

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           S+      +++T+   P         L SR  +   V I  P+ +  + ++ K      +
Sbjct: 225 SLISNKKQIVITSDKPPRDLRGMESRLVSRFASGLTVSIDTPEFETSKAILRKKIEIENV 284

Query: 192 FID--KKLAAYIVQRMERSLVFAEKLVDKMDNLAL--SRGMG-ITRSLAAEVLKET 242
                +++  +I       +   E  + ++    L        I  + A E   +T
Sbjct: 285 DYPITEEVLDFIASHFNTDVRELEGSLKRLLFYKLICEEKRDCIDLNFALEAFSDT 340


>gi|15604451|ref|NP_220969.1| chromosomal replication initiation protein [Rickettsia prowazekii
           str. Madrid E]
 gi|2494138|sp|Q59758|DNAA_RICPR RecName: Full=Chromosomal replication initiator protein DnaA
 gi|1305533|gb|AAA99160.1| DnaA protein [Rickettsia prowazekii]
 gi|3861145|emb|CAA15045.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA (dnaA) [Rickettsia
           prowazekii]
 gi|292572223|gb|ADE30138.1| Chromosomal replication initiator protein DnaA [Rickettsia
           prowazekii Rp22]
          Length = 463

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 84/242 (34%), Gaps = 32/242 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCLANI--WSDK 87
            +  + D+ +V    E A          S   + S  + L G  G GK+ L +   W  K
Sbjct: 127 DVRFTFDNFVVGVPNELAYAAARAVAESSGAVFESNPLFLYGGVGLGKTHLMHAIGWYIK 186

Query: 88  SRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQL 126
             + R   I  S +  +    K +                  +++DI  +   D    + 
Sbjct: 187 QNNPRRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICGKDSTQEEF 246

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++    P         + SRL    V  +     +    ++    
Sbjct: 247 FHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELRLGILESKI 306

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SLAAEVLKET 242
               + I K +  ++  ++  ++   E  ++K+   +      IT     ++  ++L+  
Sbjct: 307 EQMNVKIPKDVINFLASKIVSNVRELEGALNKVIAHSNFTLKAITLENTQNILRDLLRSN 366

Query: 243 QQ 244
           ++
Sbjct: 367 ER 368


>gi|332976004|gb|EGK12875.1| DNA-directed DNA replication initiator protein DnaA [Psychrobacter
           sp. 1501(2011)]
          Length = 469

 Score = 81.0 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 81/234 (34%), Gaps = 27/234 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCLANIWSDK-- 87
               + +  +   +   A +           +  +  + L G SG GK+ L +  + K  
Sbjct: 135 NPYFTFETFVSGKSNMLAYKACQELGKKQSQNRHNP-LFLYGASGLGKTHLMHSVAHKYL 193

Query: 88  ---------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDF---NDTQLFH 128
                    S     + +  +L +  I+           ++++D+ +L     + ++   
Sbjct: 194 KIGKTFYYFSSEKFINQLVYALRNQKIEQFKRKIKRVDLLIIDDVHVLAGKNKSSSEFLS 253

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           +          +++ +   P           SR  +   V I  P+ +   +++ K  + 
Sbjct: 254 LFADFMVEGKQVILASDRHPSQMTEFDERFRSRFSSGLAVSIEPPEMETRMQILQKKASL 313

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + + K+ A +I Q +  ++   E  ++++   A   G  I   +    LK+ 
Sbjct: 314 SGVELPKECALFIAQNVVSNVRRLEGALNQVVANANLTGNPIDLDMVQYALKDV 367


>gi|159184258|ref|NP_353356.2| chromosomal replication initiation protein [Agrobacterium
           tumefaciens str. C58]
 gi|159139585|gb|AAK86141.2| chromosomal replication initiator protein DnaA [Agrobacterium
           tumefaciens str. C58]
          Length = 520

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+   A+     I    +   R   + +    G GK+ L    ++ 
Sbjct: 175 PLDTRFTFDTFVEGSSNRVALAAAKTIAEAGAGAVRFNPLFIHAGVGLGKTHLLQAIANA 234

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +  +  +     L +     R    + D            IDLL  +D Q          
Sbjct: 235 AIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKDTLRNIDLLVIDDMQFLQGKMIQHE 294

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P       P + SRL+    ++I  PD D   +++ + 
Sbjct: 295 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGMAIEIEGPDYDMRYEMLNRR 354

Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211
             + RQ     +++  I+  + +S+  
Sbjct: 355 MGSARQDDPSFEISDEILTHVAKSVTA 381


>gi|254503894|ref|ZP_05116045.1| chromosomal replication initiator protein DnaA [Labrenzia
           alexandrii DFL-11]
 gi|222439965|gb|EEE46644.1| chromosomal replication initiator protein DnaA [Labrenzia
           alexandrii DFL-11]
          Length = 479

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 80/238 (33%), Gaps = 28/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWP---SWPSRVVILVGPSGSGKSCLANIWS--DKSR 89
              ++ D     ++   A   +            ++ +   +G GK+ L    +   +  
Sbjct: 142 NPKLTFDTFAEGTSNSLACAAVRQMAAGHDGSLGLLYIHSSTGIGKTHLLQAAATEARKG 201

Query: 90  STRFSNIAKS-----LDSILIDTRKPVL---LEDIDLLDFNDTQLFH----------IIN 131
             R + ++       L   L     PVL   ++ IDLL  +D Q  H           + 
Sbjct: 202 GRRVAYLSAEFFMYHLVPALRTPAYPVLRQAMKSIDLLLIDDLQFLHGKQGHEEFGKTLE 261

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM-FADR- 189
            + +    ++M A   P         +  R++   VV I   D      ++ K  F+ R 
Sbjct: 262 MLMESPMKIIMAADRAPDEMSTLGSTVRQRIQTGEVVTIQATDYALRHDILKKRIFSARR 321

Query: 190 ---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 +  ++  YI + +  S    E  ++++          +T  LA + L +  +
Sbjct: 322 THPGFTVPDEVIDYIARYVISSARDLEGALNRLFAHNQLTKQPVTMQLAEKTLHDLVR 379


>gi|239904640|ref|YP_002951378.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           magneticus RS-1]
 gi|239794503|dbj|BAH73492.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           magneticus RS-1]
          Length = 446

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 71/200 (35%), Gaps = 24/200 (12%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-- 85
            FP     + +  L +      + L               ++ GPSG+GK+ L    +  
Sbjct: 107 DFPYGHRFTFETFLANEKNAFPLALAREVSRGGEVRYNPFLVCGPSGAGKTHLLRAMANA 166

Query: 86  ---DKSRSTRFSNIAKSLDSILIDTRKP-------------VLLE---DIDLLDFNDTQL 126
               +  S  +      + ++  D R+P             + ++   D+      + +L
Sbjct: 167 VAKSQPTSRIYFGSVADIQALYADARRPRPEIRAELSSHDWLFIDELTDVARAPDLEPEL 226

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
             + N  H     ++ ++R    S     P   SRL+   +V +  PD     + + ++ 
Sbjct: 227 IGMFNDFHDAGRQMVFSSRERAASCDFLDPTFRSRLEWGLMVHLKAPDLSIRARFVEQVS 286

Query: 187 ADRQIFIDKKLAAYIVQRME 206
            D+++ + ++    +  R E
Sbjct: 287 KDKRLGLSREQVLTLAGRFE 306


>gi|302543965|ref|ZP_07296307.1| DnaA protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302461583|gb|EFL24676.1| DnaA protein [Streptomyces himastatinicus ATCC 53653]
          Length = 531

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 30/213 (14%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 314 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 373

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 374 YPGTRVRYVSSEEFTNEFINSIRDGKADAFRKRYRDMDILLVDDIQFLASKESTQEEFFH 433

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             N++H  +  +++++   P    V L D L +R +   +  +  P+ +    ++ K   
Sbjct: 434 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 492

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
             Q+      A   V R+  S     +L  + D
Sbjct: 493 QEQLNAPPGGAR--VHRLPESTRNIRELEGRAD 523


>gi|302381117|ref|YP_003816940.1| chromosomal replication initiator protein DnaA [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191745|gb|ADK99316.1| chromosomal replication initiator protein DnaA [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 478

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 72/221 (32%), Gaps = 32/221 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91
              ++ D  +       A+ +     SW       +   GP G GK+ L N  + +++  
Sbjct: 137 QERLTFDSFVEGQGNAFALAIARQTASWADGHFNPIFFCGPYGYGKTHLLNAIAWEAQRL 196

Query: 92  RFSNIAKSLDSIL--------------------IDTRKPVLLEDIDLLDF---NDTQLFH 128
           R       L +                      + +   +LL+D+  +        +L  
Sbjct: 197 RPDAKVVYLTAERFLSTFVKAMQDRSTAAFKESLRSADMLLLDDVQFVGGKASTQEELLS 256

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM--- 185
            + ++ +    ++++A   P++     P L S L A     +   D      V       
Sbjct: 257 TLTALIEDGKRIVLSADRPPMALTEVEPRLRSHLAAGLTCPVEPADRSLKIAVAQNRIAA 316

Query: 186 FADRQIFIDK---KLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           FA   +   +   ++   +V R   S+   E  V+ +   A
Sbjct: 317 FARLGVVNGEAQREVLEQLVDRTPGSVRELEGAVNTLAAAA 357


>gi|242281238|ref|YP_002993367.1| chromosomal replication initiator DnaA domain protein
           [Desulfovibrio salexigens DSM 2638]
 gi|242124132|gb|ACS81828.1| Chromosomal replication initiator DnaA domain protein
           [Desulfovibrio salexigens DSM 2638]
          Length = 434

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 78/216 (36%), Gaps = 28/216 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
             FP     + ++ L+       +     +    +      ++ G SGSGKS L    ++
Sbjct: 93  IDFPFGHNFTFENFLIGKKNYFPLASAKEVARVENISFNPFVICGKSGSGKSHLLKAIAN 152

Query: 87  KSR--------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND--- 123
           +                      S RF        +   D  +   L+D+  +   +   
Sbjct: 153 EVCKKVDREKVFLGNVDDVQNIYSVRFGGDIMRARNYFFDF-EYFFLDDLRQIKKYEHLQ 211

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            +L  I N+ +++   ++ +      S+     +L SRL+   +V +  PD +   K + 
Sbjct: 212 QELISIFNNFYEHGKQMVFSCTDKLASYDFLNKNLKSRLEWGLIVTLKRPDLEIRAKYVQ 271

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           K    +++ + K     + QR +    + + ++ K+
Sbjct: 272 KQCKLKKLPLSKDQILTLSQRFQ-DFRYLQGIIIKL 306


>gi|301321197|gb|ADK69840.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 399

 Score = 80.2 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 32/234 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94
            ++ ++ ++ EQA   + +    P      + + G SG GK+ L     +  +S  +   
Sbjct: 63  FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 122

Query: 95  NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131
               S D                             ++++D+  L + +      F I N
Sbjct: 123 VSYMSGDEFARKAVDILQKTHKEIEQFKNKICQNDVLIIDDVQFLSYKEKTNEIFFTIFN 182

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +  + D  L  ++   P         L +R      + I   D+     +I K   ++ I
Sbjct: 183 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 242

Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241
              +  +   +I       +   +  V +++  +        IT  + +++ ++
Sbjct: 243 KSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 296


>gi|61212611|sp|Q6MUM7|DNAA_MYCMS RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 450

 Score = 80.2 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 32/234 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94
            ++ ++ ++ EQA   + +    P      + + G SG GK+ L     +  +S  +   
Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173

Query: 95  NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131
               S D                             ++++D+  L + +      F I N
Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNKICQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +  + D  L  ++   P         L +R      + I   D+     +I K   ++ I
Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293

Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241
              +  +   +I       +   +  V +++  +        IT  + +++ ++
Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347


>gi|42560561|ref|NP_975012.1| chromosomal replication initiation protein [Mycoplasma mycoides
           subsp. mycoides SC str. PG1]
 gi|42492057|emb|CAE76654.1| Chromosomal replication initiator protein DnaA [Mycoplasma mycoides
           subsp. mycoides SC str. PG1]
          Length = 479

 Score = 80.2 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 32/234 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94
            ++ ++ ++ EQA   + +    P      + + G SG GK+ L     +  +S  +   
Sbjct: 143 FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 202

Query: 95  NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131
               S D                             ++++D+  L + +      F I N
Sbjct: 203 VSYMSGDEFARKAVDILQKTHKEIEQFKNKICQNDVLIIDDVQFLSYKEKTNEIFFTIFN 262

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +  + D  L  ++   P         L +R      + I   D+     +I K   ++ I
Sbjct: 263 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 322

Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241
              +  +   +I       +   +  V +++  +        IT  + +++ ++
Sbjct: 323 KSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 376


>gi|118589254|ref|ZP_01546660.1| chromosomal replication initiation protein [Stappia aggregata IAM
           12614]
 gi|118437954|gb|EAV44589.1| chromosomal replication initiation protein [Stappia aggregata IAM
           12614]
          Length = 491

 Score = 80.2 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 79/238 (33%), Gaps = 28/238 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST 91
              ++ D     ++   A   +    +     +    +   +G GK+ L    + ++R T
Sbjct: 154 NPKLTFDTFAEGASNSLACAAVRQMAAGHQGTLDMLYIHSATGIGKTHLLQAAASEARKT 213

Query: 92  RFSNIAKSLD----SILIDTRKPV------LLEDIDLLDFNDTQLFH----------IIN 131
                  S +     ++   R P        +  IDLL  +D Q  H           + 
Sbjct: 214 GRQVAYLSAEFFMYHLVPALRTPAFPILRQAMRSIDLLLVDDLQFLHGKQAAEEFSKTLE 273

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM--FADR 189
            + +  S ++M A             L  R++   VV I   D      ++ K    A R
Sbjct: 274 LLMESPSQIIMAADRPAEDLDTLGDALRFRIQKGEVVGIQATDYALRHDILKKRINAARR 333

Query: 190 ---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 + + +A YI + +  S    E  ++++          +T  LA + L +  +
Sbjct: 334 THPGFSVPEDVADYIARYVIASARDLEGALNRLFAHNQLTKQPVTMDLAEKTLHDLVR 391


>gi|83319700|ref|YP_424001.1| chromosomal replication initiation protein [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
 gi|118707|sp|P24116|DNAA_MYCCT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|216795|dbj|BAA14415.1| DnaA protein [Mycoplasma capricolum subsp. capricolum ATCC 27343]
 gi|83283586|gb|ABC01518.1| chromosomal replication initiator protein DnaA [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 450

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 32/234 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94
            ++ ++ S+ EQA   + +    P      + + G SG GK+ L     +  +S  +   
Sbjct: 114 FENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173

Query: 95  NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131
               S D                             ++++D+  L + +      F I N
Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +  + D  L  ++   P         L +R      + I   D+     +I K   ++ I
Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293

Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241
              +  +   +I       +   +  V +++  +        IT  + +++ ++
Sbjct: 294 KTEVTNEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKVITIEIISDLFRD 347


>gi|269216526|ref|ZP_06160380.1| DNA replication initiator protein, ATPase [Slackia exigua ATCC
           700122]
 gi|269130055|gb|EEZ61137.1| DNA replication initiator protein, ATPase [Slackia exigua ATCC
           700122]
          Length = 516

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 82/246 (33%), Gaps = 42/246 (17%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIWSDKSRST 91
            ++ ++ ++  +   A  +  +    P        + + G SG GK+ L     +   +T
Sbjct: 168 SLTFENYVIGDSNRLAYSMALAVAEQPGVKPMLNPLFIYGNSGLGKTHLLRAIQNYINAT 227

Query: 92  R--FSNIAKSLDSILIDTRKPVLLED---------------IDLLDFNDTQ--------- 125
                 +       L D    V   D                D+L  +D Q         
Sbjct: 228 YPTMDAVYVDSSEFLNDYTAAVASHDKDKKSYQDFQNRYWNADVLIIDDVQFFQGKSATV 287

Query: 126 --LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
             +F ++N +      ++++A   P +  V    + SR        I  P+ +    +I 
Sbjct: 288 DIVFQLLNKLIDRGKQVVLSADRAPKTIDVD-ERMQSRFNQGGTFDIQPPEVETKLGIIK 346

Query: 184 KMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLA 235
              A+ +         I K +  YI +    ++   +  V ++ +  + +G    +   A
Sbjct: 347 SFIAEHRRASGEDTASIPKDVQMYIAENSSSNVRELKSAVTRVLSEIIYKGRKDFSVEDA 406

Query: 236 AEVLKE 241
            E+L +
Sbjct: 407 QELLAD 412


>gi|299133399|ref|ZP_07026594.1| chromosomal replication initiator protein DnaA [Afipia sp. 1NLS2]
 gi|298593536|gb|EFI53736.1| chromosomal replication initiator protein DnaA [Afipia sp. 1NLS2]
          Length = 477

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 76/245 (31%), Gaps = 33/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +   +   A+                   + +    G GK+ L     W
Sbjct: 135 PLDPRLTFATFVGGRSNTLALAAARQVAEGRRGDNVMFNPLYIHAGVGLGKTHLLQAVTW 194

Query: 85  SDKSR-----------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDTQ 125
           +  S                  +   +  A +     +     ++++D+  L       +
Sbjct: 195 AGNSADRKVLYLTAEKFMYGFVAALKTQTALAFKEA-LRGIDVLVIDDLQFLQGKSTQAE 253

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H +N++      +++ A   P         + SRL    VV++    ++   +++   
Sbjct: 254 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGALGEELRLEILKSR 313

Query: 186 FADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +  +       +   +  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 314 VSAARAHHASFDVPLPVLDYLAKAITHNGRDLEGAINRLLAHSKLNSTPVTLEMAEREVR 373

Query: 241 ETQQC 245
           +  + 
Sbjct: 374 DLIRP 378


>gi|225164453|ref|ZP_03726710.1| chromosomal replication initiator protein DnaA [Opitutaceae
           bacterium TAV2]
 gi|224800923|gb|EEG19262.1| chromosomal replication initiator protein DnaA [Opitutaceae
           bacterium TAV2]
          Length = 354

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 69/199 (34%), Gaps = 23/199 (11%)

Query: 67  VILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKPVL------- 112
           + + G +G GK+ L +           ++R    S    + + I       ++       
Sbjct: 54  LFIYGETGLGKTHLMHAIGHTILLNRPEARVAYLSTEKFTNEFIQALQENSLVKFRQRYR 113

Query: 113 ------LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
                 L+D+  L   +    + FH  N + +    +++++             L SR +
Sbjct: 114 SVDVLLLDDVQFLAGKERIQEEFFHTFNELFESQKQIVLSSDRRASEIQKLEARLVSRFE 173

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                 I  PD +    ++    A  +  +   +  +I Q + +++   E  + K+ +  
Sbjct: 174 WGLPADIQAPDYETRLAILRTKAATLKFDLPHDVGVFIAQNIAKNIRRLEGALLKVASYG 233

Query: 224 LSRGMGITRSLAAEVLKET 242
              G  +  +    +LK+ 
Sbjct: 234 SLTGRAVDIATVENLLKDV 252


>gi|303327619|ref|ZP_07358060.1| ATPase involved in DNA replication initiation [Desulfovibrio sp.
           3_1_syn3]
 gi|302862559|gb|EFL85492.1| ATPase involved in DNA replication initiation [Desulfovibrio sp.
           3_1_syn3]
          Length = 482

 Score = 79.8 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 77/258 (29%), Gaps = 36/258 (13%)

Query: 24  KEEQLFFSFP-RCLGISRD--------DLLVHSAIEQAVRLIDSW--PSWPSRVVILVGP 72
              Q     P       R+        D +V  +   AV             R + +   
Sbjct: 123 PRRQASLPMPAVAPAFRREAAWRYRFEDFVVGPSNSVAVAAAQDVCRSGGDVRTLFVNSA 182

Query: 73  SGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRKP---------------VL 112
           SG GK+ LA         + S +      A+   S  +   +                +L
Sbjct: 183 SGLGKTHLAQAVGQSLSRNSSGARVAYLTAEEFASRFVAALRSHDVEAFKGRLRELDVLL 242

Query: 113 LEDIDLLDFNDT----QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           LED+      +      L  + N        ++ T+   P         L S   +  + 
Sbjct: 243 LEDVHFFQGKEKMQDMALAVVKNL-QARGGRVIFTSSFSPRELQRVDSQLVSHFCSGILT 301

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            +  PD++    ++ +     Q+ +   +   +  R+   +   E  ++ +   A     
Sbjct: 302 NMGRPDEEMRRHILTRKARSFQVLLPDSVCDLLASRLRGDVRQMESCLNSLIFKARLLNC 361

Query: 229 GITRSLAAEVLKETQQCD 246
           G+   LA EVL +    +
Sbjct: 362 GLNLDLALEVLNQYAGVE 379


>gi|332702338|ref|ZP_08422426.1| Chromosomal replication initiator, DnaA domain protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552487|gb|EGJ49531.1| Chromosomal replication initiator, DnaA domain protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 436

 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 82/221 (37%), Gaps = 27/221 (12%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP---SWPSRVVILVGPSGSGKSCL 80
           K  Q   +FP     + D+ LV+      +                 ++ G +GSGK+ L
Sbjct: 90  KPAQ-SVNFPFGHQFTLDNFLVNRKNSFPIASAREVATKGGSTYSPFVICGEAGSGKTHL 148

Query: 81  ANIWSDK-----SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDIDLLDF 121
               +++          FS   + ++ +               +     + ++D+  +  
Sbjct: 149 LRAVANEISKSCGIERIFSGSVEDMNQLYASRFRNDPHKARNHLGAFDYLFVDDLQQIRN 208

Query: 122 N---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
           +     +L  I N++H     ++ +      S+    P L SRL+   +V +  PD D  
Sbjct: 209 HPDLQQELILIFNALHDRRKQMVFSCTGRLSSYDFLDPKLKSRLEWGLIVHLEAPDLDIR 268

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            + I +    R++ ++++    + QR      F + ++ K+
Sbjct: 269 VRYIQQQLKLRKLQLNQEQILTLSQRFT-DFRFLQGILLKL 308


>gi|182677005|ref|YP_001831151.1| chromosomal replication initiation protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182632888|gb|ACB93662.1| chromosomal replication initiator protein DnaA [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 510

 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 84/245 (34%), Gaps = 33/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDS----WPSWP--SRVVILVGPSGSGKSCLANIWSD 86
           P    +S  + LV  + + A           P+ P  S  + L    G GK+ L    + 
Sbjct: 168 PLDRRLSFANFLVGRSNQLAFAAAKGIAAADPNDPLLSNPLYLHASVGLGKTHLLQAIAH 227

Query: 87  KSR-------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DTQ 125
            +                    +   +  A +     + T   ++++D+  L       +
Sbjct: 228 DAMIMKRRVIYLTAEKFMYGFVAALKAQTAIAFKEK-LRTIDILVIDDVQFLQGKSIQQE 286

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H +N++      +++ A   P         + SRL     V++   D+    K++   
Sbjct: 287 FCHTLNALIDAGRQIVIAADRPPADLESLDERVRSRLAGGLCVEMGALDEALRIKILETR 346

Query: 186 FADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
               ++      + + + AY+   ++ +    +  V+++   A    + +T  +A   ++
Sbjct: 347 IGAAKLVHPYFDVPQPVIAYVASVIQTNGRDLDGAVNRLLAHASLTSVPLTIEIAETAIR 406

Query: 241 ETQQC 245
           +  + 
Sbjct: 407 DLVRT 411


>gi|148927271|ref|ZP_01810841.1| Chromosomal replication initiator, DnaA C-terminal domain
           [candidate division TM7 genomosp. GTL1]
 gi|147887330|gb|EDK72784.1| Chromosomal replication initiator, DnaA C-terminal domain
           [candidate division TM7 genomosp. GTL1]
          Length = 249

 Score = 79.4 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             + FH  N +HQ +  +++++   P S       L SR +    + I +PD +    +I
Sbjct: 29  QEEFFHTFNVLHQANKQIIISSDKPPRSIPTLTERLRSRFEWGMAIDIQIPDFETRSAII 88

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
               +   I + ++   Y+   ++ ++   E  ++++  LA     G+T
Sbjct: 89  ETKASQAGIELPRETVEYMASNIKTNIRELEGALNQL--LAFCEMRGVT 135


>gi|291520346|emb|CBK75567.1| ATPase involved in DNA replication initiation [Butyrivibrio
           fibrisolvens 16/4]
          Length = 238

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 63/190 (33%), Gaps = 32/190 (16%)

Query: 35  CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS----- 85
               + D+ +V          A+ + +S   + +  + + G  G GK+ L          
Sbjct: 32  NPKFTFDNFVVGRNNRFAQTAALAVAESPGEFYNP-LYIYGGPGLGKTHLMQAIGNYIEN 90

Query: 86  DKSRSTRFSNIAKSLDSILID-------------------TRKPVLLEDIDLLDFND--- 123
               +      ++   + +I+                   T   ++++DI  +   +   
Sbjct: 91  QNPNTHILYVTSEEFTNEVIENLRTNNNASAMQRFRDKYRTVDVLMVDDIQFIIGKESTQ 150

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + FH  N++H     +++++   P           SR     +  I  PD +    ++ 
Sbjct: 151 EEFFHTFNALHAMGKQIVISSDKPPKDMETLDDRFKSRFDMGLMADIGYPDYETRMAILN 210

Query: 184 KMFADRQIFI 193
           K   ++ + +
Sbjct: 211 KKIEEKTLIL 220


>gi|182411827|ref|YP_001816893.1| chromosomal replication initiator protein DnaA [Opitutus terrae
           PB90-1]
 gi|177839041|gb|ACB73293.1| chromosomal replication initiator protein DnaA [Opitutus terrae
           PB90-1]
          Length = 467

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 79/240 (32%), Gaps = 30/240 (12%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDK---- 87
               + +  +V S  + A     +    P      + + G +G GK+ L +         
Sbjct: 132 NPRNTFETFVVGSNNQMAHAAALAVAQAPAQAYNPLFIYGDTGLGKTHLMHAIGHAILRN 191

Query: 88  ---SRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLDFND---TQLFH 128
              +R    S    + + I       +             L++D+  L   +    + FH
Sbjct: 192 NPDARVAYLSTEKFTNEFIQALQENSLTKFRQRYRHVDVLLIDDVQFLAGKERIQEEFFH 251

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             N + +    +++++             L SR +      I  PD +    ++    A 
Sbjct: 252 TFNDLFESGKQVVLSSDRRASEIQKLESRLVSRFEWGLPADIQAPDFETRLAILRSKAAC 311

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS----LAAEVLKETQQ 244
            +  +   +  +I Q + +++   E  + K+ + +      +  +    L  +VL E  Q
Sbjct: 312 MKFDLPAPILNFIAQNISKNIRRLEGALIKVASYSALTSKPLDLATTEMLLQDVLMEQAQ 371


>gi|218660627|ref|ZP_03516557.1| chromosomal replication initiation protein [Rhizobium etli IE4771]
          Length = 321

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+   A+     I    S   R   + +    G GK+ L    ++ 
Sbjct: 25  PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGSGAVRFNPLFVHSTVGLGKTHLLQAIANA 84

Query: 88  S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127
           +    R+ R   +         +  I     + L+D    IDLL  +D Q          
Sbjct: 85  AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 144

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184
             H++N +      +++ A   P       P + SRL+    +++  PD +  LE +  +
Sbjct: 145 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRR 204

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVF 211
           + A RQ     ++ A ++Q + R++  
Sbjct: 205 LAAARQEDPSLEIPADLLQHVARNITA 231


>gi|209883691|ref|YP_002287548.1| chromosomal replication initiator protein DnaA [Oligotropha
           carboxidovorans OM5]
 gi|209871887|gb|ACI91683.1| chromosomal replication initiator protein DnaA [Oligotropha
           carboxidovorans OM5]
          Length = 477

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 75/245 (30%), Gaps = 33/245 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84
           P    ++    +   +   A+                   + +    G GK+ L     W
Sbjct: 135 PLDPRLTFATFVGGRSNTLALAAARQVAEGRRGDNVMFNPLYIHAGVGLGKTHLLQAVTW 194

Query: 85  SDKSR-----------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDTQ 125
           +  +                  +   +  A +     +     ++++D+  L       +
Sbjct: 195 AGNTSERKVLYLTAEKFMYGFVAALKTQTALAFKEA-LRGIDVLVIDDLQFLQGKSTQAE 253

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK- 184
             H +N++      +++ A   P         + SRL    VV++    ++   +++   
Sbjct: 254 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGALGEELRLEILKSR 313

Query: 185 ----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                       + + +  Y+ + +  +    E  ++++   +      +T  +A   ++
Sbjct: 314 VTAARAHHASFEVPEPVLEYLAKAITHNGRDLEGAINRLLAHSKLNATSVTLEMAEREVR 373

Query: 241 ETQQC 245
           +  + 
Sbjct: 374 DLIRP 378


>gi|162446889|ref|YP_001620021.1| chromosomal replication initiator protein [Acholeplasma laidlawii
           PG-8A]
 gi|189044629|sp|A9NE65|DNAA_ACHLI RecName: Full=Chromosomal replication initiator protein DnaA
 gi|161984996|gb|ABX80645.1| chromosomal replication initiator protein [Acholeplasma laidlawii
           PG-8A]
          Length = 452

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 30/232 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSD-------K 87
            + D  +V  +   A R+       P  V     + G  G GK+ L     +       +
Sbjct: 108 YTFDSFVVGKSNMFAFRMAMKVADQPGAVANPFYIFGDVGLGKTHLMQAIGNYILDNDVE 167

Query: 88  SRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHI 129
            R           D + + +R                 +L++DI ++        + F +
Sbjct: 168 KRILYVKADNFIEDFVSLLSRNKNKTEEFNAKYKDIDVILVDDIQIMANASKTQMEFFKL 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA-- 187
            + ++  +  +++T+          +P L +R +A   V I +P+ +    ++ +  A  
Sbjct: 228 FDYLYLNNKQIVITSDKPASQLTNIMPRLTTRFEAGLSVDIQIPELEHRISILKRKTATL 287

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           D  + + + +  +I  +   ++   E  + ++ + A +  + IT ++  E L
Sbjct: 288 DANLEVSEDILTFIASQFAANIREMEGALIRLISYAQTFNLEITMNVVEEAL 339


>gi|282852314|ref|ZP_06261656.1| putative chromosomal replication initiator protein DnaA
           [Lactobacillus gasseri 224-1]
 gi|282556056|gb|EFB61676.1| putative chromosomal replication initiator protein DnaA
           [Lactobacillus gasseri 224-1]
          Length = 220

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%)

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH   +++     ++MT+   P         L SR      V+I+ PD +    ++ K
Sbjct: 1   EFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLETRIAILRK 60

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                 + ID     YI  +++ ++   E  + K+   A      I   LA E L + 
Sbjct: 61  KAETDGLAIDDSTLDYIASQVDTNIRELEGALVKVQAHATIEREDINVDLAKEALADL 118


>gi|78357363|ref|YP_388812.1| DnaA family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123754872|sp|Q30YX9|DNAA_DESDG RecName: Full=Chromosomal replication initiator protein DnaA
 gi|78219768|gb|ABB39117.1| DnaA family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 461

 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 86/264 (32%), Gaps = 36/264 (13%)

Query: 12  VPDKQKNDQPK-NKEEQLFFSFPRCLGI--------SRDDLLVHSAIEQAVRLIDS--WP 60
           VP +++    + +  EQ+                  S D+ +V  + + A          
Sbjct: 89  VPAQKRPAAARTSGAEQMGLPLHYASRSADSIKWMHSFDEFVVGPSNQMAFAASQDICQQ 148

Query: 61  SWPSRVVILVGPSGSGKSCLANIW-------------------SDKSRSTRFSNIAKSLD 101
           S+ S  + L    G GK+ L +                     +++  +     +     
Sbjct: 149 SFRSDTLFLSSDPGLGKTHLLHAVGQQLCNISNRTLPRVEYLTAEEFATRLICALKAKEV 208

Query: 102 SILIDTRKPV---LLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                  + V   LLED+  L        ++   + ++    + +L ++   P       
Sbjct: 209 DRFKARYRDVDVLLLEDVHFLQGKQRMQDEVLSTVKALQSRGAKVLFSSSFAPKDLNDLD 268

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             L SR  +  +  I  P  +  ++++ +      + + +++A  +   +   +   E  
Sbjct: 269 SQLTSRFCSGLLAVIEKPTFETRKQILREKARLHHVQLPEQVADLLADNIRADVRQIESC 328

Query: 216 VDKMDNLALSRGMGITRSLAAEVL 239
           +  +   A      IT  +A E++
Sbjct: 329 LRNLLLKARLLNQQITMDMAWEII 352


>gi|320352769|ref|YP_004194108.1| chromosomal replication initiator protein DnaA [Desulfobulbus
           propionicus DSM 2032]
 gi|320121271|gb|ADW16817.1| chromosomal replication initiator protein DnaA [Desulfobulbus
           propionicus DSM 2032]
          Length = 439

 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 76/231 (32%), Gaps = 27/231 (11%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDKS---- 88
              + +  +V  +   A     +  +        + +   +G GKS L      +     
Sbjct: 107 PAFTFEQFMVGESNLLARSACQALATGDATFGNCLFMNSTTGLGKSHLTQAVVHQVLRSA 166

Query: 89  --------RSTRFSN---------IAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFH 128
                    + +FS            +      I+    +L+ED+  L        +L  
Sbjct: 167 PSTRLHYLTAQQFSAEMVKGIRTNAMEQFSKKYINDCDMLLVEDVHTLTGKTKTQEELNT 226

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I++ + +    +++T+   P        D  SR+ +  V  I  PD +   ++I      
Sbjct: 227 ILDYLIKSGRRVILTSALPPTKLAGIDDDFRSRMTSGLVTGIESPDYETRARIIRHKLQM 286

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
             +  D+ L  ++ + ++  +   E  +  +   +   G      +  EV+
Sbjct: 287 HGLGADEDLVGFMAESLQGDVRRMESAIIGIKAKSCLLGAPPDLGMVREVV 337


>gi|78355048|ref|YP_386497.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217453|gb|ABB36802.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 436

 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 80/252 (31%), Gaps = 42/252 (16%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGS 75
            P    ++L   F R    + +  + +         A  L            +L GP+GS
Sbjct: 87  PPAAVSKKLSAPFGRE--YTFETFISNKRNFFPVASARELARQEEEIRYNPFVLCGPAGS 144

Query: 76  GKSCLANIWSDKSRSTRFS--------NIAKSLDSILIDTRKPVLLEDIDLLDF------ 121
           GK+ L    +++   T +         +   +L S         + + +    +      
Sbjct: 145 GKTHLLRAIANELSKTVYKKHIFISTIDDLGTLFSNNGSGDPAQVRQQLSACHYLLLDDL 204

Query: 122 ----------NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
                     ++  +  + NS +     ++ T              L SRL+   +V + 
Sbjct: 205 HRLREQPQLQDELTV--LFNSFYDRQKQMVFTCPGKLSELDFLETGLRSRLEWGLIVTMK 262

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            PD + L   I +     ++ + K+    + QR  R     + +++++            
Sbjct: 263 PPDLEILVTFIQRQCKLHKLQLAKEHVFTLAQRF-RDFRHLQGVLNRLTAY--------- 312

Query: 232 RSLAAEVLKETQ 243
           R L    L +T 
Sbjct: 313 RDLVNRTLADTD 324


>gi|313664891|ref|YP_004046762.1| chromosomal replication initiator protein DnaA [Mycoplasma leachii
           PG50]
 gi|312949390|gb|ADR23986.1| chromosomal replication initiator protein DnaA [Mycoplasma leachii
           PG50]
          Length = 450

 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 32/234 (13%)

Query: 40  RDDLLVHSAIEQA---VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94
            ++ ++ S+ EQA   V+ +   P      + + G SG GK+ L     +  +S  +   
Sbjct: 114 FENFVIGSSNEQAFIAVQTVSKSPGVSYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173

Query: 95  NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131
               S D                             ++++D+  L + +      F I N
Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +  + D  L  ++   P         L +R      + I   D+     +I K   ++ I
Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLGIAIQKLDNKTAIAIIKKEIKNQNI 293

Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241
              +  +   +I       +   +  V +++  +        IT  + +++ ++
Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKTITIEIISDLFRD 347


>gi|257789780|ref|YP_003180386.1| chromosomal replication initiator protein DnaA [Eggerthella lenta
           DSM 2243]
 gi|317489243|ref|ZP_07947760.1| chromosomal replication initiator protein DnaA [Eggerthella sp.
           1_3_56FAA]
 gi|325832244|ref|ZP_08165243.1| chromosomal replication initiator protein DnaA [Eggerthella sp.
           HGA1]
 gi|257473677|gb|ACV53997.1| chromosomal replication initiator protein DnaA [Eggerthella lenta
           DSM 2243]
 gi|316911644|gb|EFV33236.1| chromosomal replication initiator protein DnaA [Eggerthella sp.
           1_3_56FAA]
 gi|325486080|gb|EGC88534.1| chromosomal replication initiator protein DnaA [Eggerthella sp.
           HGA1]
          Length = 520

 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 75/235 (31%), Gaps = 44/235 (18%)

Query: 26  EQLFFSFPRCLG--ISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSC 79
            ++    P      ++ ++ ++  +   A  +  +    P +     + + G SG GK+ 
Sbjct: 161 REIALDGPDSPASTLTFENFVIGDSNRMAYSMAVAVAEMPGKAHLNPLFIYGKSGLGKTH 220

Query: 80  LANIWSDKSRST--RFSNIAKSLDSILIDTRKP-----------------------VLLE 114
           L     +    T  + S I      +L D  +                        +L++
Sbjct: 221 LMRAIQNYINETMPQLSTIYVDSAELLSDYMEASAAHDKQKSSYKNFKTRYEEADVLLID 280

Query: 115 DIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           D+  L      L   F I N +      ++++A   P +  +      SR  +     I 
Sbjct: 281 DVQYLQGKKQTLDIVFQIFNKLTSQGRQVVLSADRAPKNIDID-ERYRSRFNSGGTFDIQ 339

Query: 172 LPDDDFLEKVIVKMFAD--------RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            P+ +     IVK F D            I   +  YI +    ++   +  V K
Sbjct: 340 PPEIETKLG-IVKSFVDEYRESEGSHDFNIPDDIQMYIAESSSSNIRELKSAVTK 393


>gi|14194681|sp|Q9KHU8|DNAA_ACHLA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|8515411|gb|AAF75986.1|AF248639_2 DNA replication initiator protein [Acholeplasma laidlawii PG-8A]
          Length = 445

 Score = 79.0 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 30/232 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSD-------K 87
            + D  +V  +   A R+       P  V     + G  G GK+ L     +       +
Sbjct: 108 YTFDSFVVGKSNMFAFRMAMKVADHPGAVANPFYIFGDVGLGKTHLMQAIGNYILDNDVE 167

Query: 88  SRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHI 129
            R           D + + +R                 +L++DI ++        + F +
Sbjct: 168 KRILYVKADNFIEDFVSLLSRNKNKTEEFNAKYKDIDVILVDDIQIMANASKTQMEFFKL 227

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA-- 187
            + ++  +  +++T+          +P L +R +A   V I +P+ +    ++ +  A  
Sbjct: 228 FDYLYLNNKQIVITSDKPASQLTNIMPRLTTRFEAGLSVDIQIPELEHRISILKRKTATL 287

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           D  + + + +  +I  +   ++   E  + ++ + A +  + IT ++  E L
Sbjct: 288 DANLEVSEDILTFIASQFAANIREMEGALIRLISYAQTFNLEITMNVVEEAL 339


>gi|33867691|gb|AAQ55180.1| DnaA [Mycoplasma mycoides subsp. capri LC]
 gi|259045721|gb|ACV91303.1| DnaA [Cloning vector pMycoPuro]
          Length = 450

 Score = 78.7 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 30/211 (14%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94
            ++ ++ ++ EQA   + +    P      + + G SG GK+ L     +  +S  +   
Sbjct: 114 FENFVIGASNEQAFIAVQTASKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173

Query: 95  NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131
               S D                             ++++D+  L + +      F I N
Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +  + D  L  ++   P         L +R      + I   D+     +I K   ++ I
Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293

Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMD 220
              +  +   +I       +   +  V +++
Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLN 324


>gi|301060278|ref|ZP_07201144.1| putative chromosomal replication initiator protein DnaA [delta
           proteobacterium NaphS2]
 gi|300445621|gb|EFK09520.1| putative chromosomal replication initiator protein DnaA [delta
           proteobacterium NaphS2]
          Length = 317

 Score = 78.7 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 31/199 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV------------- 111
           + +     SGK+ L     +++   ++    I  S ++I+    K +             
Sbjct: 19  LYIYSKWSSGKTHLLQAIGNEAMKGASHKKAIYLSAENIISRFDKIIAEKSTSFWGKEKP 78

Query: 112 ----LLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
               LL+D D +  N     +L  +     +    L++ A   P      LP L SRL+ 
Sbjct: 79  PRFLLLDDFDTVASNKSSQKELLSLCTQFLESKRQLVVAASVPPNQIRNLLPQLRSRLEW 138

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD---- 220
             + +I  PD     K++ +    + I        ++      +    + LV ++D    
Sbjct: 139 GLITEIKTPDQKTKMKLVHQKTKQKGIQFQADATFFLAS----TTNDLKNLVHQIDKIKI 194

Query: 221 NLALSRGMGITRSLAAEVL 239
           + +L  G  +  S+   +L
Sbjct: 195 HASL-YGNNMDISIVQSIL 212


>gi|157803546|ref|YP_001492095.1| chromosomal replication initiation protein [Rickettsia canadensis
           str. McKiel]
 gi|166214698|sp|A8EY77|DNAA_RICCK RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157784809|gb|ABV73310.1| hypothetical protein A1E_01825 [Rickettsia canadensis str. McKiel]
          Length = 463

 Score = 78.7 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 83/244 (34%), Gaps = 36/244 (14%)

Query: 35  CLGISRDDLLVHSAIEQAV-------RLIDSWPSWPSRVVILVGPSGSGKSCLANI--WS 85
            +  + D+ +V    E A           D+     S  + L G  G GK+ L +   W 
Sbjct: 127 DVRFTFDNFVVGVPNELAYAAARAVAESTDAVSE--SNPLFLYGGVGLGKTHLMHAIGWY 184

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND---T 124
            K  +     I  S +  +    K                   ++++DI  +   D    
Sbjct: 185 IKQNNPNRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICGKDSTQE 244

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++   +  ++++    P         + SRL    V  +     +    ++  
Sbjct: 245 EFFHTFNTLIDNNRQIVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELRLGILES 304

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SLAAEVLK 240
                 + I K +  ++  ++  ++   E  ++K+   +      IT     ++  ++L+
Sbjct: 305 KIEQMNVKIPKNVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNILRDLLR 364

Query: 241 ETQQ 244
             ++
Sbjct: 365 SNER 368


>gi|303246808|ref|ZP_07333085.1| Chromosomal replication initiator DnaA domain protein
           [Desulfovibrio fructosovorans JJ]
 gi|302491825|gb|EFL51705.1| Chromosomal replication initiator DnaA domain protein
           [Desulfovibrio fructosovorans JJ]
          Length = 445

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 27/233 (11%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK 87
            FP     + +  L +      + L               +L GPSG+GK+ L    ++ 
Sbjct: 107 DFPYGHRFTFETFLANEKNHFPLALAREVAGGREARYNPFLLCGPSGAGKTHLLRAMANA 166

Query: 88  ------SRSTRFSNIAKSLDSILIDTRKP------------VLLE---DIDLLDFNDTQL 126
                 S +  F +I    +     T  P            + ++   D+      + +L
Sbjct: 167 VSRSRPSAAVFFGSIDDIGNRYADPTANPHEIRAAIVASDFLFIDELADVKRDPILEQEL 226

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
             + N+ H     ++ + R    S     P L SRL+   +V + LPD D   + +    
Sbjct: 227 VLLFNAFHDAGKQMVFSCRERVASCDFG-PTLKSRLEWGLMVHLKLPDLDVRVRCVEHAN 285

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS-LAAEV 238
            D+++ + ++    +  R E      E ++ +++      G  +T + LA  +
Sbjct: 286 RDKRLGLSREQTLTLASRFE-GFRQLEGVLLRIEAFRRHTGQELTDAELARHI 337


>gi|331703021|ref|YP_004399708.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides
           subsp. capri LC str. 95010]
 gi|328801576|emb|CBW53729.1| Chromosomal replication initiator protein DnaA [Mycoplasma mycoides
           subsp. capri LC str. 95010]
          Length = 450

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 30/211 (14%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94
            ++ ++ ++ EQA   + +    P      + + G SG GK+ L     +  +S  +   
Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173

Query: 95  NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131
               S D                             ++++D+  L + +      F I N
Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +  + D  L  ++   P         L +R      + I   D+     +I K   ++ I
Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293

Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMD 220
              +  +   +I       +   +  V +++
Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLN 324


>gi|256383664|gb|ACU78234.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|296455846|gb|ADH22081.1| chromosomal replication initiator protein DnaA [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 450

 Score = 78.3 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 30/211 (14%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94
            ++ ++ ++ EQA   + +    P      + + G SG GK+ L     +  +S  +   
Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173

Query: 95  NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131
               S D                             ++++D+  L + +      F I N
Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +  + D  L  ++   P         L +R      + I   D+     +I K   ++ I
Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293

Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMD 220
              +  +   +I       +   +  V +++
Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLN 324


>gi|298290019|ref|YP_003691958.1| chromosomal replication initiator protein DnaA [Starkeya novella
           DSM 506]
 gi|296926530|gb|ADH87339.1| chromosomal replication initiator protein DnaA [Starkeya novella
           DSM 506]
          Length = 412

 Score = 78.3 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 25/204 (12%)

Query: 67  VILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------I 116
           + + G +G GK+ L       +++S        A+      +   K    ED       I
Sbjct: 107 LFVHGGTGLGKTHLLQALAQAAEESGRRVAYLTAERFMFGFVAAMKTGTTEDFRARFGEI 166

Query: 117 DLLDFNDTQLFH----------IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           DLL  +D Q  H           +N++      +++ A   P         L SRL A  
Sbjct: 167 DLLLLDDVQGLHGKSVQQAFSSALNALMDAHRQVVIAADRHPGDLDAFDERLRSRLGAGL 226

Query: 167 VVKISLPDDDFLEKVIVKMFADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           V+++   DD+    +I               +   +A ++      +       V+++  
Sbjct: 227 VIELRSLDDEVRAAIIAAQAERAAVLSPGFALPVDVARFLASDGRMNARDLAGAVNRLLA 286

Query: 222 LALSRGMGITRSLAAEVLKETQQC 245
                G+ IT  +A  VL++  + 
Sbjct: 287 PHQFGGVEITMDMAQAVLRDVIRT 310


>gi|157826881|ref|YP_001495945.1| chromosomal replication initiation protein [Rickettsia bellii OSU
           85-389]
 gi|166214697|sp|A8GVN1|DNAA_RICB8 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|157802185|gb|ABV78908.1| chromosomal replication initiation protein [Rickettsia bellii OSU
           85-389]
          Length = 463

 Score = 78.3 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 82/242 (33%), Gaps = 32/242 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANI--WSDK 87
            +  + D+ +V +  E A     +     S       + L G  G GK+ L +   W  K
Sbjct: 127 DIRFTFDNFVVGAPNELAYAAARAVAESSSAVSESNPLFLYGGVGLGKTHLMHAIGWYIK 186

Query: 88  SRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQL 126
             +     I  S +  +    K +                  +++DI  +   D    + 
Sbjct: 187 QNNPSRKVIYMSAEKFMYQFVKALRNKEVMSFKEKFRSVDVLMIDDIQFICGKDSTQEEF 246

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           FH  N++   +  ++++    P         + SRL    V  +     +    ++    
Sbjct: 247 FHTFNTLIDNNRQMVISCDRSPSDLDDIEDRIKSRLGWGLVADVHSTTYELRLGILESKI 306

Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SLAAEVLKET 242
               + + K    ++  ++  ++   E  ++K+   +      IT     ++  ++L+  
Sbjct: 307 EQMNVKVPKDAIDFLASKIVSNVRELEGALNKVIAHSNFTAKEITLENTQNILRDLLRSN 366

Query: 243 QQ 244
           ++
Sbjct: 367 ER 368


>gi|258404913|ref|YP_003197655.1| chromosomal replication initiator protein DnaA [Desulfohalobium
           retbaense DSM 5692]
 gi|257797140|gb|ACV68077.1| chromosomal replication initiator protein DnaA [Desulfohalobium
           retbaense DSM 5692]
          Length = 460

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 85/269 (31%), Gaps = 45/269 (16%)

Query: 13  PDKQKNDQPKNKEEQ------LFFSFPRCL-----GISRDDLLVHSAIEQAVRLIDSW-- 59
           P+   +       +Q      L   +           S DD ++    + A     +   
Sbjct: 92  PNTTHHTATPAASQQRSEHLALPIDYSHVPQPQQWRHSFDDFIIGQCNQLAHAACTNLCR 151

Query: 60  PSWPSRVVILVGPSGSGKSCLANI-----------------------WSDKSRSTRFSNI 96
            + P+  V L    G GK+ L +                        ++++      +  
Sbjct: 152 KTLPAESVFLSSGPGLGKTHLLHAVGHYYAQNQKNSQVRVGYVTAEEFANQMIMALKNRT 211

Query: 97  AKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
             +           +LLED+      +    +L   I  + Q+   ++ ++   P     
Sbjct: 212 IGTFKDRYRKNLDVLLLEDVHFFQGKEKIQEELLSTIKFLEQHGRKVVFSSSFLPKELNK 271

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L S   +  +  I  PD D   K+I       QI I  ++   + + +        
Sbjct: 272 VDNQLTSLFCSGFIAPIDAPDADMRLKIIQAKAQRFQIHIPTEVQEMVAENI---HSDIR 328

Query: 214 KLVDKMDNLALSRG---MGITRSLAAEVL 239
           +L   + N+AL       GI ++LA EVL
Sbjct: 329 QLESCIKNMALKARLLNQGINQALAEEVL 357


>gi|158520018|ref|YP_001527888.1| chromosomal replication initiator protein DnaA [Desulfococcus
           oleovorans Hxd3]
 gi|158508844|gb|ABW65811.1| chromosomal replication initiator protein DnaA [Desulfococcus
           oleovorans Hxd3]
          Length = 460

 Score = 77.9 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 79/252 (31%), Gaps = 36/252 (14%)

Query: 27  QLFFS-FPRCLGISR--------DDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSG 74
           QL            R        D+ +V +  + A      + +      R + L    G
Sbjct: 107 QLTLPSVQVKPATGRVLKADYTFDNFVVGNHNDFAYTAVLSLGARQQSGGRSLFLSSRPG 166

Query: 75  SGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKP----------------VLL 113
            GKS LA     ++         +    +   + ++                     +L+
Sbjct: 167 MGKSHLAQALGHQTIKAQPGCRVYYTTVEDFSNEMVYAYTTKSSGAFKKKYRTGFDMLLI 226

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  L   D    +L  +++ + + D  +L      P         L SRL    +  +
Sbjct: 227 DDIHALAGKDRTQEELAMVVDYMLEADRKVLFAGCCLPGEIPKMNDQLKSRLSCGLITTM 286

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             PD     +++ K        + + +  Y+   +   +   E  +  +   +   G+ +
Sbjct: 287 ETPDFTTRVRILEKKARFYGYAVPRDILEYLADVLTEDVRQLESGLANLATKSCLLGVPM 346

Query: 231 TRSLAAEVLKET 242
            R LA  ++K  
Sbjct: 347 DRELAESIIKNM 358


>gi|254417773|ref|ZP_05031497.1| chromosomal replication initiator protein DnaA [Brevundimonas sp.
           BAL3]
 gi|196183950|gb|EDX78926.1| chromosomal replication initiator protein DnaA [Brevundimonas sp.
           BAL3]
          Length = 479

 Score = 77.5 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 32/219 (14%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
            ++ D  +       A+ +   + SW       V   GP G GK+ L N  + +++  R 
Sbjct: 140 RLTFDSFVEGQGNAFALAIAKQVASWADGHFNPVFFCGPYGYGKTHLLNAIAWEAQRLRP 199

Query: 94  SNIAKSLDSIL--------------------IDTRKPVLLEDIDLLDF---NDTQLFHII 130
                 L +                      + +   +LL+D+  +        +L   +
Sbjct: 200 EAKVVYLTAERFLSTFVKAMQDRSTAAFKESLRSADMLLLDDVQFVGGKTSTQEELLSTL 259

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR- 189
            ++ +    ++ +A   P++     P L S L A     +   D +    V         
Sbjct: 260 TALIEDGKRIVFSADRAPMALTEVEPRLRSHLAAGLTCPVEAGDRELKIAVAQNRLKALS 319

Query: 190 -----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                Q     ++ A +V R   S+   E  V+ +   A
Sbjct: 320 ALGVVQGEAAPEVLAQLVDRTPGSMRELEGAVNTLAAAA 358


>gi|86356015|ref|YP_467907.1| chromosomal replication initiation protein [Rhizobium etli CFN 42]
 gi|86280117|gb|ABC89180.1| chromosomal replication initiator protein [Rhizobium etli CFN 42]
          Length = 516

 Score = 77.5 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 32/219 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+   A+     I    S   R   + +    G GK+ L    ++ 
Sbjct: 174 PLDSRFTFDTFVEGSSNRVALAAAKTIAEVGSGAVRFNPLFVHSTVGLGKTHLLQAIANA 233

Query: 88  S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127
           +    R+ R   +         +  I     + L+D    IDLL  +D Q          
Sbjct: 234 AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 293

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184
             H++N +      +++ A   P       P + SRL+    +++  PD +  LE +  +
Sbjct: 294 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRR 353

Query: 185 MFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           + A R     + I   L  ++ + +  S    E   +++
Sbjct: 354 LAAARLEDPSLEIPADLLQHVARNITASGRELEGAFNQL 392


>gi|114704371|ref|ZP_01437279.1| chromosomal replication initiation protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539156|gb|EAU42276.1| chromosomal replication initiation protein [Fulvimarina pelagi
           HTCC2506]
          Length = 504

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 39/248 (15%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDS-----WPSWPSRVVILVGPSGSGKSCLANIWSDK 87
           P       D  +  +A   A+    +       S+    + +    G GK+ L    ++ 
Sbjct: 162 PLDPRYVFDTFVEGTANRVAMAAGRAIAENGPQSFRFNPLFIHAGVGLGKTHLLQAIANA 221

Query: 88  SR--------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DTQ 125
           +                     ++   +         +     ++++D+  L       +
Sbjct: 222 AAGRDDAPRVVYLTAEYFMWRFASAIRDNKALDLKETLRGTDVLIIDDVQFLQGKSIQQE 281

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N++      ++  A           P + SRL     ++++ PD     ++I   
Sbjct: 282 FCHLLNALIDSAKHVICAADRPAKELESLDPRVRSRLSNGITLELATPDYAMRREIIEMR 341

Query: 186 -----FADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
                  D    + ++    I +R++   R L  A   +      +L  G  +      E
Sbjct: 342 IRALAAEDPTFVLSEETIDAIARRVDGTGRDLEGAFNQIAF--RHSL--GQPLNPEAIVE 397

Query: 238 VLKETQQC 245
           +L +  + 
Sbjct: 398 ILAQFSRT 405


>gi|163782527|ref|ZP_02177524.1| chromosome replication initiator protein DnaA [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882100|gb|EDP75607.1| chromosome replication initiator protein DnaA [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 407

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 75/211 (35%), Gaps = 29/211 (13%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI---WSDKS 88
            +  S ++ +V      A  +     + P  +   + + G  G GK+ L      +  + 
Sbjct: 89  NVKYSFNNFVVGEGNRLAYEVALEVANSPGSLYNPLFIYGGVGLGKTHLLQAIGNFCVEK 148

Query: 89  RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDF---NDTQLFHII 130
                   A      +++  K                +LL+DI  L        + F+I 
Sbjct: 149 GYHVVYKSANDFSEEMVEAIKTGSVKEFRNRYRSIDLLLLDDIQFLSGKTRTQVEFFNIF 208

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF--LEKVIVKMFAD 188
           N +   +  +++ +   P         L SR +   VV+I L  D+   LE +  K+   
Sbjct: 209 NHMFLKEKQIVLASDRHPKELKDVSDRLVSRFEGGLVVEICL--DELTKLEIIKRKLCEL 266

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           + I +  ++   ++++   ++   E  +  +
Sbjct: 267 K-IEVQDRIVESLMEQTSNNVRDIEGTIRGL 296


>gi|256384495|gb|ACU79064.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256384749|gb|ACU79318.1| chromosomal replication initiator protein DnaA [unidentified
           plasmid]
          Length = 450

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 30/211 (14%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94
            ++ ++ ++ EQA   + +    P      + + G SG GK+ L     +  +S  +   
Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173

Query: 95  NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131
               S D                             ++++D+  L + +      F I N
Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +  + D  L  ++   P         L +R      + I   D+     +I K   ++ I
Sbjct: 234 NSIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293

Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMD 220
              +  +   +I       +   +  V +++
Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLN 324


>gi|39938487|ref|NP_950253.1| chromosomal replication initiator protein [Onion yellows
           phytoplasma OY-M]
 gi|61212623|sp|Q6YRL3|DNAA_ONYPE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|39721596|dbj|BAD04086.1| chromosomal replication initiator protein [Onion yellows
           phytoplasma OY-M]
          Length = 507

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 84/238 (35%), Gaps = 31/238 (13%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIW------ 84
                S D+ +V  +   A ++           +  + + G +G GK+ L          
Sbjct: 164 TNPKYSFDNFVVGKSNNFAFKIAKKIAEEKKVTTNPLYIFGKAGIGKTHLIQAIGNHILK 223

Query: 85  -SDKSRSTRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFN---DTQL 126
            +  S+   +      ++      RK               +L++DI ++        + 
Sbjct: 224 KTHSSKKVLYVKADGFIEEFTNQLRKAKMEDFNEKYRDIDLLLVDDIQIMAGATRTQMEF 283

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F + + ++     +++T+          +  L SR +A  +V I  PD +    ++ K  
Sbjct: 284 FKLFDYLYLNQKQIVITSDKQASELKNIMSRLTSRFEAGLMVDIQSPDFNHRLNILKKKI 343

Query: 187 AD----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +      + I K +   I      ++   E  + ++ N A + G  I  ++A E L+
Sbjct: 344 LEFEPQNPLKIKKDVLDLIASSFVNNVREMEGALLRLLNYAQTFGYDIDINIANEALE 401


>gi|319778796|ref|YP_004129709.1| Chromosomal replication initiator protein DnaA [Taylorella
           equigenitalis MCE9]
 gi|317108820|gb|ADU91566.1| Chromosomal replication initiator protein DnaA [Taylorella
           equigenitalis MCE9]
          Length = 520

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 91/249 (36%), Gaps = 40/249 (16%)

Query: 35  CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWS----- 85
              ++  +L+V  + E A      ++ +        + + G +G GK+ + +        
Sbjct: 180 NQRLTFQNLVVGDSNELAYVTAQNVVRNIGKHGYNPLFIYGKTGLGKTHIMHAIGNELFT 239

Query: 86  -DKSRSTRFSNIAKSLDSILIDTRKPVLLE---------DIDLLDFNDTQLFH------- 128
             K R+  + +       I     +   +E         + DLL  +D QLF        
Sbjct: 240 KHKMRNVLYIHAETYYTEITRRMIEGRWVEYRAQDNKYINSDLLLMDDVQLFARKERTQQ 299

Query: 129 ----IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
               +  ++   D  ++++  TFP +       L SR +   +++I  PD +    ++  
Sbjct: 300 EFFVLYEALVNNDKQVVISCDTFPDNLDAIEDRLKSRFQNGLIIEIEPPDVELRVSILKS 359

Query: 185 MFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA-------A 236
              D   +    ++A YI   ++ ++   E  + K+  +A S+   I +           
Sbjct: 360 KAKDFPDMEFTDEVALYIASNIKSNVRELEGALQKV--MAYSQFKQIDKPTVDTCKAALR 417

Query: 237 EVLKETQQC 245
           +VL++    
Sbjct: 418 DVLRQRNGS 426


>gi|320101556|ref|YP_004177147.1| chromosomal replication initiator protein DnaA [Isosphaera pallida
           ATCC 43644]
 gi|319748838|gb|ADV60598.1| chromosomal replication initiator protein DnaA [Isosphaera pallida
           ATCC 43644]
          Length = 487

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSR-----ST 91
            D+ +V    + A            R    ++L G  G GK+ L       ++     + 
Sbjct: 144 FDEFVVGPCNQLAHAAALDAARGLGRSCGPLVLHGAVGLGKTHLLESLHHLAKRLHPSAR 203

Query: 92  RFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDF---NDTQLFHIINSI 133
                A++  +  ++                   ++++D   L        +  H  N++
Sbjct: 204 ILHLTAEAFTNRFLEAIRGQNLGGFRARHRQADLLIVDDAHFLAAKRATQDEFLHTYNAV 263

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
                 +++     P        +L +R     V  +++PD +    +I    A R + +
Sbjct: 264 SSQGGLVVVAVDRHPRRLERMSDELRTRFLGGVVAPLTVPDQETRRALIRSKAAARGVAL 323

Query: 194 DKKLAAYIV--QRME-RSLVFAEKLV 216
            +++ A +    R   R L  A  +V
Sbjct: 324 PEEIVALLADPPRASVRELEGALNVV 349


>gi|254363202|ref|ZP_04979251.1| chromosomal replication initiator protein DnaA [Mannheimia
           haemolytica PHL213]
 gi|153095096|gb|EDN75647.1| chromosomal replication initiator protein DnaA [Mannheimia
           haemolytica PHL213]
          Length = 445

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 81/240 (33%), Gaps = 35/240 (14%)

Query: 35  CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82
               + D+ +   + + A     +++D+        +     +G GK+ L +        
Sbjct: 108 NPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTHLLHAIGNELVK 167

Query: 83  ---------IWSDKSRSTRFSNIAKSLDSI-----LIDTRKPVLLEDIDLLDFN---DTQ 125
                    I  ++        I  S +          +   ++++DI  L        +
Sbjct: 168 RTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDDIQFLANKPKVQEE 227

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N++ +    +++T+   P +       + SRL       I  P+ +    ++ + 
Sbjct: 228 FLHLLNALFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATIEPPELETRVAILRQK 287

Query: 186 FADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +R   + +  A  + Q++    R L  A   V     L L     IT     E L++ 
Sbjct: 288 ALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTL---RPITVDAVRETLQDL 344


>gi|90420502|ref|ZP_01228409.1| chromosomal replication initiator DnaA [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335230|gb|EAS48983.1| chromosomal replication initiator DnaA [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 505

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 80/245 (32%), Gaps = 43/245 (17%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRV----VILVGPSGSGKSCLANIWSDK 87
           P       D L+  S+   A+    +   + P  V    + +    G GK+ L    ++ 
Sbjct: 163 PLDPRYVFDTLVEGSSNRVALAAGRAIAENGPQSVRFNPLFIHAAVGLGKTHLLQAIANA 222

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +           L +     R    + D            ID+L  +DTQ          
Sbjct: 223 AIRREDKPRVVYLTAEYFMWRFATAIRDNRALDLKETLRGIDILIIDDTQFLQGKSIQQE 282

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N++      ++  A    +      P + SRL     ++++ PD +    +I   
Sbjct: 283 FCHLLNALIDSAKQVICAADRPAMELESLDPRVRSRLSNGITLELAAPDYEMRRSIIRTR 342

Query: 186 FA-----DRQIFIDKKLAAYIVQRM---ERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
            A     D    +   +   I QR+    R L  A   +      +L +       L+AE
Sbjct: 343 AAAMRAEDPSFDMPDGVIDTIAQRVAGSGRDLEGAFNQIAF--RHSLGQ------PLSAE 394

Query: 238 VLKET 242
            L + 
Sbjct: 395 HLDDL 399


>gi|118566876|gb|ABL01757.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 134

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   +L++DI      +    + FH  N++ + +  +++T+  +P         L SR  
Sbjct: 30  SVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFG 89

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
               V I  P+ +    +++K   +  I +  ++A +I +R+ RS
Sbjct: 90  WGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRL-RS 133


>gi|261493280|ref|ZP_05989807.1| chromosomal replication initiator protein DnaA [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496476|ref|ZP_05992856.1| chromosomal replication initiator protein DnaA [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261307679|gb|EEY09002.1| chromosomal replication initiator protein DnaA [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261311130|gb|EEY12306.1| chromosomal replication initiator protein DnaA [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 449

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 35/240 (14%)

Query: 35  CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82
               + D+ +   + + A     +++D+        +     +G GK+ L +        
Sbjct: 112 NPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTHLLHAIGNELVK 171

Query: 83  ---------IWSDKSRSTRFSNIAKSLDSI-----LIDTRKPVLLEDIDLLDFN---DTQ 125
                    I  ++        I  S +          +   ++++DI  L        +
Sbjct: 172 RTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDDIQFLANKPKVQEE 231

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++NS+ +    +++T+   P +       + SRL       I  P+ +    ++ + 
Sbjct: 232 FLHLLNSLFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATIEPPELETRVAILRQK 291

Query: 186 FADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +R   + +  A  + Q++    R L  A   V     L L     IT     E L++ 
Sbjct: 292 ALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTL---RPITVDAVRETLQDL 348


>gi|319406516|emb|CBI80158.1| chromosomal replication initiator protein DnaA [Bartonella sp.
           1-1C]
          Length = 520

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 32/207 (15%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI 83
            F  P     + ++ +  ++   A+    S             + +    G GK+ L   
Sbjct: 171 VFGSPLDSRYTFENFIEGASNRVALAAARSIAEGHKSSLRFNPLFIYASVGLGKTHLLQA 230

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127
            +  +           L +     R  V + D            IDLL  +D Q      
Sbjct: 231 IAAAALKRLTPARVIYLTAEYFMWRFAVAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 290

Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                 H++N +      +++ A   P         + SRL+    ++I  PD +    +
Sbjct: 291 IQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVTLEIETPDYEMRLAM 350

Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203
           + +     Q     I I  ++  YI +
Sbjct: 351 LRQRLKVAQQDDNMITISDEILEYIAK 377


>gi|85057281|ref|YP_456197.1| chromosomal replication initiation protein [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|123766371|sp|Q2NKC5|DNAA_AYWBP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|84789386|gb|ABC65118.1| chromosomal replication initiation protein [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 504

 Score = 77.1 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 85/238 (35%), Gaps = 31/238 (13%)

Query: 34  RCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------ 84
                S D+ +V  +   A ++   I       +  + + G SG GK+ L          
Sbjct: 161 TNPKYSFDNFVVGKSNNFAFKISKKIAEEKKVTTNPLYIFGKSGIGKTHLIQAIGNHILK 220

Query: 85  -SDKSRSTRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFN---DTQL 126
            +  S+   +      ++      RK               +L++DI ++        + 
Sbjct: 221 NTHSSKKVLYVKADGFIEEFTNQLRKAKMEDFNEKYRDIDLLLVDDIQIMAGATRTQMEF 280

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           F + + ++     +++T+          +  L SR +A  +V I  PD +    ++ K  
Sbjct: 281 FKLFDYLYLNQKQIVITSDKQASELKNIMSRLTSRFEAGLMVDIQSPDFNHRLNILKKKI 340

Query: 187 AD----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +      + I K +   I      ++   E  + ++ N A + G  I  ++A E L+
Sbjct: 341 LEFEPQNTLKIKKDVLDLIASSFVNNVREMEGALLRLLNYAQTFGYDIDINIANEALE 398


>gi|244439|gb|AAB21305.1| DnaA protein [Mycoplasma capricolum, Peptide, 450 aa]
          Length = 450

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 32/234 (13%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94
            ++ ++ S+ EQA   + +    P      + + G SG GK+ L     +  +S  +   
Sbjct: 114 FENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173

Query: 95  NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131
               S D                             ++++D+  L + +      F I N
Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           +  + D  L  ++   P         + +R      + I   D+     +I K   ++ I
Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRIITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293

Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241
              +  +   +I       +   +  V +++  +        IT  + +++ ++
Sbjct: 294 KTEVTNEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKVITIEIISDLFRD 347


>gi|256830860|ref|YP_003159588.1| Sigma 54 interacting domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580036|gb|ACU91172.1| Sigma 54 interacting domain protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 426

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 26/220 (11%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVG 71
           + +  +      Q   + P       D+ LV++     +     +      P    +L G
Sbjct: 76  RSRIVRESRPAGQ---ALPFGSEFIFDNFLVNNKNYFPLASAQEVAQSREAPYNPFVLCG 132

Query: 72  PSGSGKSCLANIWS---DKSRSTR-FSNIAKSLDSILIDTRKP---------VLLEDIDL 118
            SGSGKS L    +    +  +   +    + L  +                + ++D+  
Sbjct: 133 ESGSGKSFLLRAIANARSEHGADGSYVGGIEDLHELYSSRSDARKFLTSMQLLAVDDLQE 192

Query: 119 LD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           +    +   +L  + +  H     ++         +    P L SRL+    V +  PD 
Sbjct: 193 IARYRYLQGELLALFDHFHLQRKQMVFACTGKVGGYTFLAPKLKSRLEWGLSVMLKAPDL 252

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
           D   +       +R++ + K     + QR          L
Sbjct: 253 DIRTQYAQSRCRERRLDLSKDRILLLAQR----FADLRNL 288


>gi|222147316|ref|YP_002548273.1| chromosomal replication initiation protein [Agrobacterium vitis S4]
 gi|221734306|gb|ACM35269.1| chromosomal replication initiator protein DnaA [Agrobacterium vitis
           S4]
          Length = 524

 Score = 76.0 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 32/230 (13%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSG 76
           +   +   F  P     + D  +  ++   AV     I    +   R   + +    G G
Sbjct: 171 RAPVQGPLFGSPLDSRYTFDGFVEGASNRVAVAAAKTIAEAGAGAVRFNPLFIHSSVGLG 230

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDT 124
           K+ L    ++ +  +  +     L +     R    + D            IDLL  +D 
Sbjct: 231 KTHLLQAIANAAIHSPRAPRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDM 290

Query: 125 QLF----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           Q            H++N +      +++ A   P         + SRL+    +++  PD
Sbjct: 291 QFLQGKTIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDQRVRSRLQGGVAIEMEAPD 350

Query: 175 -----DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
                D    ++ +    D  + I  ++ A++ + +  S    E   +++
Sbjct: 351 YDMRLDMLKTRLALAKKEDPSLEIPAEIIAHVARNVASSGRDLEGAFNQL 400


>gi|330903390|gb|EGH33962.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 163

 Score = 76.0 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 3/115 (2%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   +L++DI      +    + FH  N++ +    +++T+  +P         L SR  
Sbjct: 42  SVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFG 101

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
               V +  P+ +    +++K     ++ +    A +I QR+  ++   E  + +
Sbjct: 102 WGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKR 156


>gi|256826461|ref|YP_003150420.1| chromosomal replication initiator protein DnaA [Cryptobacterium
           curtum DSM 15641]
 gi|256582604|gb|ACU93738.1| chromosomal replication initiator protein DnaA [Cryptobacterium
           curtum DSM 15641]
          Length = 506

 Score = 76.0 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 44/245 (17%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRSTR 92
           G S +  ++ ++ + A  +  +    P       + + G SG GK+ L     +      
Sbjct: 163 GYSFESFVIGTSNKMAYSMAVAVAETPGQPQFNPLFIYGKSGLGKTHLLRSIQNYVHHAY 222

Query: 93  FSNIAKSLDSILI-----------------------DTRKPVLLEDIDLLDFNDTQL--- 126
            +     +D++ +                       +T   +L++D+  L      L   
Sbjct: 223 PTAKTVYVDTMALVNDYTDAAISRSNKSFSQFKQKYETADVLLIDDVQGLQNKKETLNMV 282

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC--SRLKAATVVKISLPDDDFLEKVIVK 184
           F I+NS+      ++ +A   P +  +   D    SR        I  P+ +    +I  
Sbjct: 283 FQILNSMIDRGKQVVFSADRAPKNIDI---DERYMSRFNMGGTCDIQPPELETKLGIIKN 339

Query: 185 MFA--DRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAA 236
                 R       I   +  YI Q    ++   +  V K+    L       IT   AA
Sbjct: 340 YLEECRRGANDDFSIPADVQEYIAQNSSSNIRELKSAVTKV-VFELRNNGKSEITIDEAA 398

Query: 237 EVLKE 241
            +L +
Sbjct: 399 RLLTD 403


>gi|328946931|ref|YP_004364268.1| Chromosomal replication initiator protein dnaA [Treponema
           succinifaciens DSM 2489]
 gi|328447255|gb|AEB12971.1| Chromosomal replication initiator protein dnaA [Treponema
           succinifaciens DSM 2489]
          Length = 485

 Score = 76.0 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 82/246 (33%), Gaps = 38/246 (15%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83
           QL          + +  +     E A     +    P R    +++ G  G GK+ L   
Sbjct: 140 QLSED------YTFEKFVKGENSEFAYSASLAAAKEPGRRFNPLLIYGGVGLGKTHLMQS 193

Query: 84  W-----------------SDKSRSTRFSNIAKSLDSILIDTRK-------PVLLEDI--- 116
                                S     +    SL     +  K        +LL+DI   
Sbjct: 194 IGNYIYNNPPEGKENIKICYISAENFLNEFTFSLRDGTSEKFKNKYRKLDVLLLDDIHFL 253

Query: 117 -DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            D +   +  LF+    +++  + ++ T              L SR    T + +  P  
Sbjct: 254 EDKIQTQEE-LFYTFEELYRTHAQIVFTCDRPISELNGIEDRLKSRFSMGTTIDLQPPSY 312

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           +  + +++K    ++  + + +  +I + ++ ++      +DKM   A      +T  +A
Sbjct: 313 EIRKAILLKKLEIKKKSVPEDVIDFIAKNIQSNVRELGACLDKMIGYAELLQKNLTIDIA 372

Query: 236 AEVLKE 241
            ++L +
Sbjct: 373 KKLLSD 378


>gi|283853686|ref|ZP_06370917.1| Chromosomal replication initiator DnaA [Desulfovibrio sp. FW1012B]
 gi|283570927|gb|EFC18956.1| Chromosomal replication initiator DnaA [Desulfovibrio sp. FW1012B]
          Length = 453

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 42/242 (17%)

Query: 35  CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANI------- 83
               S D+ +V  + E A      + D   S  +  + +    G GK+ L          
Sbjct: 117 RFRFSYDEFVVGPSNELAYVASQGICDM--SLSADQLFISSAPGLGKTHLIQAMGKRLSH 174

Query: 84  ------------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI----DLLDF 121
                             ++++      +   +   +   +    +LLEDI    D    
Sbjct: 175 TGGEDGRNLRVAYLSAEEFANRLVIALKTRQVEKFKAAFRENVDVLLLEDIHFFRDKPRI 234

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
            D  L  +I +++     L+ T+   P         L SR+ +  +  I  PD    +++
Sbjct: 235 QDELLNTLI-ALNSRGCRLVFTSSFLPRDLAGLDAQLLSRISSGFLTVIDKPDLATRKRI 293

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG---MGITRSLAAEV 238
           + +  A  Q+ +  +++  +  R+        +L   + NLAL        I+  LA +V
Sbjct: 294 LERKAAVHQVLLPDEVSTLLADRL---HADVRQLESCLQNLALKARLLNCRISVDLAWDV 350

Query: 239 LK 240
           L+
Sbjct: 351 LR 352


>gi|163757767|ref|ZP_02164856.1| chromosomal replication initiation protein [Hoeflea phototrophica
           DFL-43]
 gi|162285269|gb|EDQ35551.1| chromosomal replication initiation protein [Hoeflea phototrophica
           DFL-43]
          Length = 485

 Score = 75.6 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 32/219 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+   A+     I    +   R   + +    G GK+ L    +  
Sbjct: 143 PLDPQCTFDSYVEGSSNRVALAAARTIAEAGTGAVRFNPLFIHSNVGLGKTHLLQAIAAA 202

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           + S   +     L +     R    + D            IDLL  +D Q          
Sbjct: 203 ASSHSRNPRVVYLTAEYFMWRFATAIRDNDALSFKESLRNIDLLVIDDMQFLQGKSIQHE 262

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P       P + SRL+    ++I  PD +   +++ K 
Sbjct: 263 FCHLLNMLLDSARQVVVAADRAPWELESLDPRVRSRLQGGVAIEIEAPDYEMRLEILRKR 322

Query: 186 FADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            A  Q     + ID+ + A++ Q +  S    E   +++
Sbjct: 323 LAIAQMEDATLDIDETILAHVAQNITSSGRELEGAFNQL 361


>gi|212703551|ref|ZP_03311679.1| hypothetical protein DESPIG_01596 [Desulfovibrio piger ATCC 29098]
 gi|212673051|gb|EEB33534.1| hypothetical protein DESPIG_01596 [Desulfovibrio piger ATCC 29098]
          Length = 510

 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 80/265 (30%), Gaps = 36/265 (13%)

Query: 17  KNDQPKNKEEQLFFSFPR---------CLGISRDDLLVHSAIEQAVRL---IDSWPSWPS 64
           +  QP  +  Q     P              S DD +V      AV     I        
Sbjct: 125 RPSQPLWQPSQCSLPLPAPTLRPRTRQRWRFSFDDFVVGPCNAMAVAAAKDICHDGGCVE 184

Query: 65  RVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNI-AKSLDSILIDTRKPVLLEDIDLL 119
             + +   SG GK+ +         ++    R + + A+ L S  +   +   +E     
Sbjct: 185 -TLFVSSASGLGKTHIMQSVGRAVQEQGGQARLAYLSAEGLASRYVAALRSNDVESFRAR 243

Query: 120 DFN------------------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
             +                     +  +I S+       + T+   P         L S 
Sbjct: 244 LRDLDVLLLEDVHFLQGKEKMQDMVLTVIKSLQDRGGRAIFTSSFSPRELEKLDSQLVSH 303

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
             +  V  +  PD +    ++ +     Q+ +  ++   +  R++  +   E  +  +  
Sbjct: 304 FCSGIVSPLERPDTEMCRHILERKAKSFQVLLPDEVCDLLAGRLQGDVRQLESCLKSLVF 363

Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246
            A     G+   LA EVL++    D
Sbjct: 364 KARMLNCGLNPELALEVLQQYATVD 388


>gi|218679350|ref|ZP_03527247.1| chromosomal replication initiation protein [Rhizobium etli CIAT
           894]
          Length = 270

 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 78/219 (35%), Gaps = 32/219 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+   A+     I    S   R   + +    G GK+ L    ++ 
Sbjct: 9   PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGSGAVRFNPLFIHSAVGLGKTHLLQAIANA 68

Query: 88  S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127
           +    R+ R   +         +  I     + L+D    IDLL  +D Q          
Sbjct: 69  AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 128

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184
             H++N +      +++ A   P       P + SRL+    ++   PD +  LE +  +
Sbjct: 129 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEFDAPDYEMRLEILKRR 188

Query: 185 MFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           + A R     + I   L  ++ + +  S    E   +++
Sbjct: 189 LAAARLEDPSLEIPADLLQHVARNITASGRELEGAFNQL 227


>gi|218777862|ref|YP_002429180.1| chromosomal replication initiator protein DnaA [Desulfatibacillum
           alkenivorans AK-01]
 gi|226735801|sp|B8FFL8|DNAA_DESAA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|218759246|gb|ACL01712.1| chromosomal replication initiator protein DnaA [Desulfatibacillum
           alkenivorans AK-01]
          Length = 454

 Score = 75.6 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 88/258 (34%), Gaps = 40/258 (15%)

Query: 21  PKNKEEQLFF----SFPRCLG-------ISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           P+   +QL        PR           + D  +V    + A     S  S  S++   
Sbjct: 93  PEEAPQQLCLPAFADIPRPSSGRLLNRDFTFDSFVVGDCNDFAYSAALSVASKRSKLHAP 152

Query: 67  VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRKP----------- 110
           + L+  +G GKS L+         +      F   A+   + +I                
Sbjct: 153 LYLLAQTGLGKSHLSQAVGRQVMQESPEERVFYITAEDFTNEMIGALNTGTISSFKEKYR 212

Query: 111 -----VLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                ++LED+  L       D   F + +S+ + +  L+ T+   P         + SR
Sbjct: 213 RNCDTLILEDVHFLSGKNRTQDELAFTL-DSLMETNKRLVFTSAYLPSEIPKMHDSMRSR 271

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           L A  +  +  PD     +++ +     +I +   +A ++   +   +   E  +  +  
Sbjct: 272 LNAGVISSLEAPDFRMRMRILQRKANSAKIALPMDVAEFMASELTGDIRHLESGIKGLAA 331

Query: 222 LALSRGMGITRSLAAEVL 239
                G GI   +A EV+
Sbjct: 332 RNSIMGRGIDLKMAREVV 349


>gi|319403601|emb|CBI77186.1| chromosomal replication initiator protein DnaA [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 524

 Score = 75.2 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 32/207 (15%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI 83
            F  P     + ++ +  ++   A+    S             + +    G GK+ L   
Sbjct: 175 VFGSPLDSRYTFENFIEGTSNRVALAAARSIAEGHKSSLRFNPLFIYASVGLGKTHLLQA 234

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127
            +  +           L +     R  V + D            IDLL  +D Q      
Sbjct: 235 IAAAALKRLTPARVIYLTAEYFMWRFAVAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 294

Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                 H++N +      +++ A   P         + SRL+    ++I  PD +    +
Sbjct: 295 IQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIETPDYEMRLAM 354

Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203
           + +     Q     I I  ++  YI +
Sbjct: 355 LRQRLKVAQQDDNMITISDEILEYIAK 381


>gi|323143414|ref|ZP_08078099.1| putative chromosomal replication initiator protein DnaA
           [Succinatimonas hippei YIT 12066]
 gi|322416819|gb|EFY07468.1| putative chromosomal replication initiator protein DnaA
           [Succinatimonas hippei YIT 12066]
          Length = 494

 Score = 75.2 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 35/221 (15%)

Query: 35  CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
               + ++ +           AV +  +  +       + G SG GK+ L    +++   
Sbjct: 151 NPNKTFENYVTDPENKLLYATAVAVAANPGTSNYNPFYIYGASGLGKTHLLFAIANRIRE 210

Query: 88  ---------------------SRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND 123
                                S +    N          D   +    +++DI      D
Sbjct: 211 THPEVSLIYTRAEEFIRHYVESMARIKKNPYDDERMHFQDLYTSYDVFIVDDIQNFIKAD 270

Query: 124 ---TQLFHII-NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
                 F II + I Q +  L++ +   P +     P L SR  +    ++  P  +   
Sbjct: 271 KTRDTFFDIIADFIDQPNRQLILASDVPPGNLKNFNPRLTSRFGSGVCCEVVPPSPETRA 330

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
            + +K   +    +   +  YI   +  ++   E  +  ++
Sbjct: 331 AITLKKCKELNADLPDDIIQYIALHIRSNVREIEGAIKTLN 371


>gi|295106381|emb|CBL03924.1| chromosomal replication initiator protein DnaA [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 534

 Score = 75.2 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 79/245 (32%), Gaps = 52/245 (21%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VIL 69
           D+ + D P      L F          ++ ++  +   A  +  +    P +     + +
Sbjct: 175 DEDETDGPDRPTSTLTF----------ENFVIGDSNRMAYSMAVAVAEMPGKAHLNPLFI 224

Query: 70  VGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSILIDTRKP------------- 110
            G SG GK+ L     +       + ST + + A+ L   +  +                
Sbjct: 225 YGKSGLGKTHLLRAIQNYVHETMPNLSTIYVDSAELLSDYMEASAAHDKEKSSYKNFKTR 284

Query: 111 ------VLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                 +L++D+  L      L   F I N +      ++++A   P +  +      SR
Sbjct: 285 YEEADVLLIDDVQYLQGKKQTLDIVFQIFNKLTGQGRQVVLSADRAPKNIDID-ERYKSR 343

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD--------RQIFIDKKLAAYIVQRMERSLVFAE 213
             +     I  P+ +     IVK F D            I   +  YI +    ++   +
Sbjct: 344 FNSGGTFDIQPPEIETKLG-IVKSFVDEYRATEGKASFAIPDDIQMYIAESSSSNIRELK 402

Query: 214 KLVDK 218
             V K
Sbjct: 403 SAVTK 407


>gi|254694807|ref|ZP_05156635.1| chromosomal replication initiation protein [Brucella abortus bv. 3
           str. Tulya]
          Length = 540

 Score = 75.2 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 28/205 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  ++   A+    +     S       + +    G GK+ L    +  
Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +   +       L +     R    + D            IDLL  +D Q          
Sbjct: 255 AFQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHE 314

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N++      +++ A   P         + SRL+    ++++ PD +   +++ + 
Sbjct: 315 FCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRR 374

Query: 186 FADRQIF-IDKKLAAYIVQRMERSL 209
            A  Q       +   I+  + R++
Sbjct: 375 LASAQCEDASLDIGEEILAHVARTV 399


>gi|927586|gb|AAA85542.1| dnaA [Mycobacterium bovis]
          Length = 259

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 68/191 (35%), Gaps = 25/191 (13%)

Query: 76  GKSCLANIWSDKSRSTRFSNI---AKSLDSILIDTRKP------------------VLLE 114
           GK+ L +  +       F  +     S +    D                      +L++
Sbjct: 1   GKTHLLHA-AGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVD 59

Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DI  ++  +    + F   N++H  +  +++++   P         L +  +   +  + 
Sbjct: 60  DIQFIEGKEGIQEEFFRTFNTLHNANKQIVISSDRPPKQLATLEDRLRTDFEWGLITDVQ 119

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            P+ +    ++ K     ++ +   +   I   +ER++   E  + ++   A      I 
Sbjct: 120 PPELETRIAILRKKAQXERLAVPDGVLELIASSIERNIRVLEXALIRVTPFASLNKTPID 179

Query: 232 RSLAAEVLKET 242
           ++LA  VL++ 
Sbjct: 180 KALAEIVLRDL 190


>gi|281356509|ref|ZP_06243001.1| chromosomal replication initiator protein DnaA [Victivallis
           vadensis ATCC BAA-548]
 gi|281317201|gb|EFB01223.1| chromosomal replication initiator protein DnaA [Victivallis
           vadensis ATCC BAA-548]
          Length = 460

 Score = 74.4 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 84/260 (32%), Gaps = 39/260 (15%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGI-----SRDDLLVHSAIEQAVRLIDSWPSWPS--RVVIL 69
           +  +P  +  Q     PR         + ++ +V      A     +    P     + L
Sbjct: 103 RPSEPAAEPVQ-----PRRPRSCMDEHTFENFVVGGENRHAFAAAKTAAEEPGLYNPLYL 157

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNI--AKSLDSILIDTRKPV-----LLE-------- 114
            G SG GK+ L    + + R      +    + D +L D    +     L E        
Sbjct: 158 YGASGVGKTHLLQAVTVEVRRRNPKAVVRYATCDELLNDFYNLLQQHRSLSEFRSSVRDV 217

Query: 115 ---------DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
                     +        + F++ N+++     +++T+   P         L SR ++ 
Sbjct: 218 DVLLVDDVHSLAKKTQMQEEFFNLFNTLYSQRKQIILTSDRQPCEISDLDKRLESRFESG 277

Query: 166 TVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
              ++ +P+ +    ++     D   +  +  +   ++   +  ++        ++    
Sbjct: 278 MTAEVGVPEFEARLAILRMWRNDVLNKAPLGDEFLEFLAANISSNVRRLHGAFIRLASYA 337

Query: 223 ALSRGMGITRSLAAEVLKET 242
           +LS    +T   A E+L   
Sbjct: 338 SLSGNDKLTIEQAEELLHSQ 357


>gi|218887171|ref|YP_002436492.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758125|gb|ACL09024.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 444

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 42/240 (17%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLL--------VHSAIEQAVRLIDSWPSWPSR 65
              +         QL   +P     + D  L        V SA E A    D        
Sbjct: 80  GSPQAAPAPKTARQL--DYPFGARFTFDTFLSNRKNQFPVASAKEVARDGRD-PHDRVYN 136

Query: 66  VVILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILID--- 106
             ++ G +G+GK+ L    +++                   TRF  ++ +      +   
Sbjct: 137 PFVVCGGNGNGKTHLLRAIANELSRSRDENAIFCGPVDELGTRFEGLSATGAGAAQERQQ 196

Query: 107 ------TRKPVLLEDI----DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                   + ++++D+    D     D   F   +  H +   ++              P
Sbjct: 197 ARSRLCAHEVLVVDDLQRLRDQPFLQDELTF-AFDHFHDHGKQMVFACSGKLADLDFLSP 255

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            L SRL+   +V++  PD D   K I +    R I + K+ +  + QR  R     + ++
Sbjct: 256 KLRSRLEWGLIVELREPDLDVRLKFIQQQSRSRNIQLSKEHSLTLAQRF-REFRHLQGIL 314


>gi|325108799|ref|YP_004269867.1| replication initiation factor DnaA protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969067|gb|ADY59845.1| Chromosomal replication initiator DnaA domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 341

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 84/233 (36%), Gaps = 34/233 (14%)

Query: 42  DLLVHSAIEQAVRLIDS----WPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTR- 92
           D +     E AV  ++      P+    ++ L GPSG+GKS L       +  +    R 
Sbjct: 8   DFIPLPENEFAVAAVERLFAETPAIDPPLLFLFGPSGAGKSHLVMQALEAFHHRYEGVRQ 67

Query: 93  -----FSNIAKSLDSILIDTRKPVLLEDI--------------DLLDFNDTQLFHIINSI 133
                +     +++S   +      LE++              D   +   +L  +I+ I
Sbjct: 68  RTLSAYEFATLNMESAAGEEETAAQLEELADLDVFVCEGVQHFDRQTWLQKKLILLIDDI 127

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +    +++T++    ++    P L SR  +     +++P  +  +++I    A   + I
Sbjct: 128 LRSGGRVILTSQLPVGAYEQTHPKLVSRFHSGVTASMAMPGVESRKRLIQYFAAIHDLEI 187

Query: 194 DKKLAAYIVQRM---ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                  + ++M    R +  A   ++ +  L       I      E+L   Q
Sbjct: 188 HPTAVEQLARKMPVSPREMHGAIVQLEAVQRL---EEREIDNGTVEELLAFQQ 237


>gi|258406588|ref|YP_003199330.1| Chromosomal replication initiator DnaA domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257798815|gb|ACV69752.1| Chromosomal replication initiator DnaA domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 451

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 35/233 (15%)

Query: 9   SFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66
           S   P  +K+  P N  +   F          ++ L +              + P +   
Sbjct: 102 SLVAP--RKHTPPTNGSDSYTF----------ENFLTNKKNYFPYASAREAIAAPGKKYN 149

Query: 67  -VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRK 109
            ++L G SG+GK+ L    +   R                 T +      +    +    
Sbjct: 150 PLVLSGGSGTGKTHLLKAMAQAFRDRFPEQKILYFTVDDLHTFYKEAGGDMARSSLIASH 209

Query: 110 PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++D+  L   ++  T+L  I N+ ++    L    R      G   P L SRL+   
Sbjct: 210 LLLIDDLQSLQLYNYLQTELLLIFNAQYEQSGQLAFACRGKLPECGFLEPTLLSRLEWGL 269

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +V +  PD +   + +      +++ + ++    + Q   +   + + ++ K+
Sbjct: 270 MVHLKTPDLELRVQYLHTANQKKRLGLSRRHILLLGQHF-KDFRYLQGVITKL 321


>gi|241202756|ref|YP_002973852.1| chromosomal replication initiation protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240856646|gb|ACS54313.1| chromosomal replication initiator protein DnaA [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 516

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 75/207 (36%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+   A+     I        R   + +    G GK+ L    ++ 
Sbjct: 174 PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGQGAVRFNPLFIHSTVGLGKTHLLQAVANA 233

Query: 88  S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127
           +    R+ R   +         +  I     + L+D    IDLL  +D Q          
Sbjct: 234 AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 293

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P       P + SRL+    ++   PD +   +++ + 
Sbjct: 294 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEFDAPDYEMRLEILKRR 353

Query: 186 FADRQIF-IDKKLAAYIVQRMERSLVF 211
            A  ++     ++ A ++Q + R++  
Sbjct: 354 LAVARLEDPSLEIPAELLQHVARNVTA 380


>gi|261215132|ref|ZP_05929413.1| chromosomal replication initiator protein dnaA [Brucella abortus
           bv. 3 str. Tulya]
 gi|260916739|gb|EEX83600.1| chromosomal replication initiator protein dnaA [Brucella abortus
           bv. 3 str. Tulya]
          Length = 494

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 28/205 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  ++   A+    +     S       + +    G GK+ L    +  
Sbjct: 149 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +   +       L +     R    + D            IDLL  +D Q          
Sbjct: 209 AFQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHE 268

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N++      +++ A   P         + SRL+    ++++ PD +   +++ + 
Sbjct: 269 FCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRR 328

Query: 186 FADRQIF-IDKKLAAYIVQRMERSL 209
            A  Q       +   I+  + R++
Sbjct: 329 LASAQCEDASLDIGEEILAHVARTV 353


>gi|329891034|ref|ZP_08269377.1| chromosomal replication initiator protein dnaA [Brevundimonas
           diminuta ATCC 11568]
 gi|328846335|gb|EGF95899.1| chromosomal replication initiator protein dnaA [Brevundimonas
           diminuta ATCC 11568]
          Length = 318

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 29/210 (13%)

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104
           W       V   GP G GK+ L N  + +++  R       L +                
Sbjct: 4   WADGHFNPVFFCGPYGYGKTHLLNAIAWEAQRLRPDAKVVYLTAERFLSTFVRAMQDRST 63

Query: 105 ------IDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                 + +   +LL+D+  +        +L + + ++ +    ++++A   P++     
Sbjct: 64  AAFKESLRSADMLLLDDVQFVGGKTSTQEELLNTLTALIEDGKRIVLSADRAPMALTDVE 123

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMF-ADRQIFI-----DKKLAAYIVQRMERSL 209
           P L S L A     +   D D    V      A  Q+ +        +  +++ R   S+
Sbjct: 124 PRLRSHLAAGLTCPVEAADRDLKVAVAQSRLNALAQLGVVTGEARADVLEHLIDRTPGSM 183

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              E  V+ +  +A SR   +T      +L
Sbjct: 184 RELEGAVNTLAAVAGSRLSALTVDEVQSLL 213


>gi|116250144|ref|YP_765982.1| chromosomal replication initiation protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|123384972|sp|Q1MMD6|DNAA_RHIL3 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|115254792|emb|CAK05866.1| putative chromosomal replication initiator protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 482

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+   A+     I        R   + +    G GK+ L    ++ 
Sbjct: 140 PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGQGAVRFNPLFIHSTVGLGKTHLLQAVANA 199

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +     S     L +     R    + D            IDLL  +D Q          
Sbjct: 200 AVQNPRSLRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 259

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P       P + SRL+    ++   PD +   +++ + 
Sbjct: 260 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEFDAPDYEMRLEILKRR 319

Query: 186 FADRQIF-IDKKLAAYIVQRMERSLVF 211
            A  ++     ++ A ++Q + R++  
Sbjct: 320 LAVARLEDPSLEIPAELLQHVARNVTA 346


>gi|319779750|ref|YP_004139226.1| chromosomal replication initiator protein DnaA [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317165638|gb|ADV09176.1| chromosomal replication initiator protein DnaA [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 515

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 67/214 (31%), Gaps = 46/214 (21%)

Query: 33  PRCLGISRDDLLVHSAIEQ--------------AVRLIDSWPSWPSRVVILVGPSGSGKS 78
           P     +    +   +                 AVR            + L    G GK+
Sbjct: 171 PLDPRYTFGSFIEGPSNRVAFAAAKAVAESQSSAVRF---------NPLFLHATVGLGKT 221

Query: 79  CLANIWSD-------KSRSTRFSNIAK--SLDSILIDTRKPVLLE---DIDLLDFNDTQL 126
            L    +        KSR    +         + + D     L E   DIDLL  +D Q 
Sbjct: 222 HLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLLIIDDMQF 281

Query: 127 F----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                      H+IN +      +++ A   P       P + SRL     +++S PD  
Sbjct: 282 LQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPRVRSRLNGGVALEMSAPDFA 341

Query: 177 FLEKVI-VKMFADRQIFIDKKLAAYIVQRMERSL 209
               ++ +++   R       ++  I+  + R++
Sbjct: 342 MRLGMLKLRLATARSDDASLDISEEILNHVARTV 375


>gi|110632363|ref|YP_672571.1| chromosomal replication initiation protein [Mesorhizobium sp. BNC1]
 gi|110283347|gb|ABG61406.1| chromosomal replication initiator protein DnaA [Chelativorans sp.
           BNC1]
          Length = 479

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 32/219 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWSDK 87
           P     + +  +  ++   A     +     +       + +    G GK+ L    +  
Sbjct: 135 PLDSRFTFESFIEGASNRVAYAAARTVAELAAGAIRFNPLFIHASVGLGKTHLLQAVAAA 194

Query: 88  SRSTRFSNIAKSLDSI--------LIDTRKPVLLE----DIDLLDFNDTQLF-------- 127
           S   R  +    L +          I     + L+    DIDLL  +D Q          
Sbjct: 195 SLKRRPQSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLLIIDDMQFLQGKSIQNE 254

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A           P + SRL     +++  PD D    ++ + 
Sbjct: 255 FCHLLNMLLDSARQVVVAADRPVSELESLEPRVKSRLNGGVSLEMLTPDYDLRLAMLKQR 314

Query: 186 FA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            A     D  + I  ++  ++ Q +  S    E   +++
Sbjct: 315 LACARVEDPSLDIPLEVLEHVAQVVTGSGRELEGAFNQL 353


>gi|317155007|ref|YP_004123055.1| Chromosomal replication initiator DnaA domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316945258|gb|ADU64309.1| Chromosomal replication initiator DnaA domain protein
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 460

 Score = 73.3 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 28/216 (12%)

Query: 30  FSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
             FP     + D  L++         A  +     S  +  ++  GP GSGK+ L    +
Sbjct: 122 IDFPFGQEFTFDTFLINKKNYFPIASAREVAKQSASLFNPFIV-CGPGGSGKTHLIRAVA 180

Query: 86  DK-----SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDIDLLDFN---D 123
           ++       S  F      L+S                +     + ++D   +  +    
Sbjct: 181 NEISKKHDHSKIFIGSMDELNSFYTIRFKGDPFRARNHLFEYNFLFIDDFQKIREHPHFQ 240

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            ++ ++ N  +     +++  R    S+      L SRL    +V +   D +     I 
Sbjct: 241 QEVVNLFNHFYDNKKQMIICCRDKLASYDFLDESLQSRLGWGLIVTLKEADLEIRVGYIQ 300

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +    +++ + K+    + Q       + + ++ K+
Sbjct: 301 RQCRLKRLLLSKEQVLTLAQHFT-DFRYLQGVLLKL 335


>gi|297620521|ref|YP_003708658.1| Chromosomal replication initiator protein dnaA [Waddlia
           chondrophila WSU 86-1044]
 gi|297375822|gb|ADI37652.1| Chromosomal replication initiator protein dnaA [Waddlia
           chondrophila WSU 86-1044]
          Length = 450

 Score = 72.5 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 82/236 (34%), Gaps = 32/236 (13%)

Query: 38  ISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD-------- 86
              +  +   A +    A   + + P      + + G  G GK+ + +            
Sbjct: 119 YRFELFIEGPANQFVKSAAMGVAARPGQSYNPLFIHGGVGLGKTHILHSIGHYIHERNKK 178

Query: 87  -----KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH------- 134
                 +     +++  SL +  +D  K      +D+L  +D Q   + N ++       
Sbjct: 179 LRVQCITTEAFINDLVDSLRNKSVDQLKRFYRSQVDVLLVDDIQF--LQNRLNFEEEFCN 236

Query: 135 ------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
                   +  +++T+   P    +    + +R++   V  + +P+ +    ++      
Sbjct: 237 TFETLINQNKQIVITSDKPPSQLNLS-ERMVARMEWGLVAHLGVPELETRVAILQHKAQQ 295

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           + + +   +A +I + +  ++   E  ++++        + IT  L    L+E   
Sbjct: 296 KGLDLPNNVAFFIAEHIYNNVRQLEGAINRLSAHCKLLNLNITEELVETTLREMLH 351


>gi|16904917|gb|AAL30942.1| DNA polymerase initiator protein [Streptococcus pneumoniae]
 gi|16904919|gb|AAL30943.1| DNA polymerase initiator protein [Streptococcus pneumoniae]
 gi|16904921|gb|AAL30944.1| DNA polymerase initiator protein [Streptococcus pneumoniae]
 gi|16904923|gb|AAL30945.1| DNA polymerase initiator protein [Streptococcus pneumoniae]
 gi|16904925|gb|AAL30946.1| DNA polymerase initiator protein [Streptococcus pneumoniae]
 gi|16904927|gb|AAL30947.1| DNA polymerase initiator protein [Streptococcus pneumoniae]
 gi|16904929|gb|AAL30948.1| DNA polymerase initiator protein [Streptococcus pneumoniae]
 gi|16904931|gb|AAL30949.1| DNA polymerase initiator protein [Streptococcus pneumoniae]
 gi|16904935|gb|AAL30951.1| DNA polymerase initiator protein [Streptococcus pneumoniae]
 gi|16904937|gb|AAL30952.1| DNA polymerase initiator protein [Streptococcus pneumoniae]
          Length = 163

 Score = 72.5 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 24/158 (15%)

Query: 69  LVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILID---------------TR 108
           + G  G GK+ L N   ++       +      A+S  +  +D               + 
Sbjct: 1   IYGGPGLGKTHLLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSL 60

Query: 109 KPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
             +L++DI  L         + F+  N++H     +++T+   P         L +R   
Sbjct: 61  DLLLIDDIQSLSGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSW 120

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
                I+ PD +    ++                 Y+ 
Sbjct: 121 GLTQTITPPDFETRIAILQSKTEHLGYNFQSDTLEYLA 158


>gi|303249148|ref|ZP_07335388.1| Chromosomal replication initiator DnaA [Desulfovibrio
           fructosovorans JJ]
 gi|302489473|gb|EFL49420.1| Chromosomal replication initiator DnaA [Desulfovibrio
           fructosovorans JJ]
          Length = 454

 Score = 72.5 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 40/241 (16%)

Query: 35  CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANI------W 84
               S D+ +V    E A      + D   S  +  + +    G GK+ L         +
Sbjct: 118 RFRFSYDEFVVGPCNELAYVASRGICDLTLS--AEQLFISSAPGLGKTHLIQAMGRQLSF 175

Query: 85  SDKSRSTRFSNIAKSLDSIL-----------IDTRKPVLLEDIDLLDFNDTQLF------ 127
                  +      S +              ++  K    E++D+L   D   F      
Sbjct: 176 CGDQEHKKLRVAYLSAEEFANRLVMALKTKQVERFKAAFRENVDVLLLEDIHFFRDKPRI 235

Query: 128 --HIIN---SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
              ++N   ++      L+ T+   P         L SR+ +  +  I  PD +  ++++
Sbjct: 236 QDELLNTLKALQSRGCRLVFTSSFLPKDLTGLDAQLLSRINSGFLTVIDKPDRETRKRIL 295

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG---MGITRSLAAEVL 239
               A  Q+ +  +++  +  R+        +L   + NLAL       GI+  LA +VL
Sbjct: 296 ECKAAVHQVLLPDEVSMLLADRL---CADVRQLESCLQNLALKARLLNCGISVDLAWDVL 352

Query: 240 K 240
           +
Sbjct: 353 R 353


>gi|300870226|ref|YP_003785097.1| chromosomal replication initiation protein [Brachyspira pilosicoli
           95/1000]
 gi|300687925|gb|ADK30596.1| chromosomal replication initiation protein [Brachyspira pilosicoli
           95/1000]
          Length = 452

 Score = 72.5 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 28/220 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94
              D+ +  S  +            P R    + + G  G GK+ L     +       +
Sbjct: 119 FKFDNFIEGSNNKFVFAAAKLVAEKPGREYNPLYIYGSVGIGKTHLLQAIGNYYLENNPN 178

Query: 95  NIAKSLDSILID--------------------TRKPVLLEDIDLLDFNDT---QLFHIIN 131
                +D                         +    LL+D+ LL+       +LF I  
Sbjct: 179 AKVNYIDGSGFRDEYIYGLQTKKSDNFKKKYKSLDMFLLDDLQLLESAQETSKELFEIFQ 238

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++      ++  +   P         L +R + + ++ I  P  +    +I +   D   
Sbjct: 239 ALDNACKQMVFVSDKPPKELRNIEARLKNRFEKSLILSIEPPQYETRLAIIERKLIDLNT 298

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            ID+++  Y+ + +   +   E  +     L++   M IT
Sbjct: 299 TIDEEVVKYMAENITTDVRKIEGAIRA--YLSVRDLMKIT 336


>gi|222084650|ref|YP_002543179.1| chromosomal replication initiator protein DnaA [Agrobacterium
           radiobacter K84]
 gi|221722098|gb|ACM25254.1| chromosomal replication initiator protein DnaA [Agrobacterium
           radiobacter K84]
          Length = 516

 Score = 72.1 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+      A + I    S   R   + +    G GK+ L    ++ 
Sbjct: 174 PLDSRFTFDTYVEGSSNRVSLAAAKTIAEAGSGAVRFNPLFVHSTVGLGKTHLLQAIANA 233

Query: 88  S--RSTRFSNIAKSLD------SILIDTRKPVLLED----IDLLDFNDTQLF-------- 127
           +         +  + +      +  I     + L+D    IDLL  +D Q          
Sbjct: 234 AVQNPRNLRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 293

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P       P + SRL+    +++  PD +   +++ + 
Sbjct: 294 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEVEAPDYEMRLEILKRR 353

Query: 186 FADRQIF-IDKKLAAYIVQRMERSLVF 211
               ++     ++ A ++  + R++  
Sbjct: 354 LEAARLEDPSLEIPAELLSHVARNVTA 380


>gi|197294170|ref|YP_001798711.1| Chromosomal replication initiator protein [Candidatus Phytoplasma
           australiense]
 gi|171853497|emb|CAM11336.1| Chromosomal replication initiator protein [Candidatus Phytoplasma
           australiense]
          Length = 455

 Score = 72.1 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 87/236 (36%), Gaps = 31/236 (13%)

Query: 35  CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLA-----NIWS 85
               S D+ +V    + A     ++I+      +    + G +G GK+ L      ++  
Sbjct: 115 NPKYSLDNFVVGKGNKFAFTIAQKIIEEDKISVNPF-YIFGQTGIGKTHLIQGIGNHLIQ 173

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFN---DTQLFH 128
            K++   +      ++      RK               +L++DI ++        + F 
Sbjct: 174 KKNKKVLYVKADGFIEEFTNQLRKAKMEDFNEKYRDIDVLLVDDIQIMAGATRTQMEFFK 233

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           + + ++     +++T+          +  L SR +   +V +  PD D    ++ K   +
Sbjct: 234 LFDYLYLNQKQIIITSDKQASELKNIMNRLTSRFEGGLMVDVQNPDFDHRIHILKKKILE 293

Query: 189 RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            Q    + + K++   I      ++   E  + ++ N A + G  I   +A E L+
Sbjct: 294 FQNNNPLKVQKEVVEMICSVFVNNIREMEGALLRLLNYAKTFGQEINLKVAGEALE 349


>gi|304319871|ref|YP_003853514.1| chromosomal replication initiator protein DnaA [Parvularcula
           bermudensis HTCC2503]
 gi|303298774|gb|ADM08373.1| chromosomal replication initiator protein DnaA [Parvularcula
           bermudensis HTCC2503]
          Length = 503

 Score = 72.1 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 36/246 (14%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
            +  + +   V+     AV  I+       S V  + G  G GKS L +  +++      
Sbjct: 164 NVSQTFESFSVNDTNRMAVLAIEQIIEGAGSPVTYIYGGVGRGKSHLLSAAANQFLRRYP 223

Query: 94  SN--IAKSLDSILIDTRKPVL----------LEDIDLLDFND-----------TQLFHII 130
               I  + DS++ D    ++          L D DLL F+D            +L  +I
Sbjct: 224 GRRLIFLTYDSLVADVSDAIVSRSLKELRAHLRDTDLLIFDDVHMLRGRKRTQEELACLI 283

Query: 131 NSIHQYDSSLLMTARTFPVSWG--VCLPDLCSRLKAATVVKISLPDDDFLEKVIVK---M 185
             + Q    +L+T    P        L  L  RL     V ++ PD D   K+  +   +
Sbjct: 284 ERLEQMGKPILVTGAVSPKELAETGILCRLTDRLGGGARVPLNRPDYDLRLKIAQRCSDV 343

Query: 186 FADR-QIFIDKKLAAYIVQRME---RSLVFAEKLVD---KMDNLALSRGMGITRSLAAEV 238
           F  R  + + ++   YI ++ E   R L+ A +  +   ++D   LS+    T++  A+V
Sbjct: 344 FTLRTGLQMPRRHIEYIARKSEGCVRELLGAMRFYELSVQLDPTVLSKDDQETQAHLAQV 403

Query: 239 LKETQQ 244
           LK  ++
Sbjct: 404 LKSRRR 409


>gi|319898309|ref|YP_004158402.1| chromosomal replication initiator protein DnaA [Bartonella
           clarridgeiae 73]
 gi|319402273|emb|CBI75812.1| chromosomal replication initiator protein DnaA [Bartonella
           clarridgeiae 73]
          Length = 520

 Score = 72.1 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 32/207 (15%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI 83
            F  P     + +  +  S+   A+    S             + +    G GK+ L   
Sbjct: 171 VFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHKSSLRFNPLFIYASVGLGKTHLLQA 230

Query: 84  WSDKS--RSTRFSNIAKSLDSILIDTRKPVL----------LEDIDLLDFNDTQLF---- 127
            +  +  RST    I  + +  +      +           L DIDLL  +D Q      
Sbjct: 231 IAAAALKRSTPVRVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 290

Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                 H++N +      +++ A   P         + SRL+    ++I  PD +   ++
Sbjct: 291 IQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIEAPDYEMRLEI 350

Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203
           + +     Q     I I  ++  YI +
Sbjct: 351 LRQRLKAAQQDDNMITISDEILEYIAK 377


>gi|26553453|ref|NP_757387.1| chromosomal replication initiation protein [Mycoplasma penetrans
           HF-2]
 gi|26453459|dbj|BAC43791.1| chromosomal replication initiator protein [Mycoplasma penetrans
           HF-2]
          Length = 452

 Score = 72.1 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 98/258 (37%), Gaps = 50/258 (19%)

Query: 4   MKEDYSFFVPDKQKNDQPKN------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR--- 54
           M  + + F   K++ D  K       K + L  +       + ++  +    + A +   
Sbjct: 74  MNSNLNVFFITKEEKDINKELPTIEEKPKTLEINPTLDSRFTFENYTIGMFNKNAFKAAS 133

Query: 55  -LIDSWPSWPSRVVILVGPSGSGKSCLANIW---------------------------SD 86
             ++   +W  + +++ G +G GK+ L +                             + 
Sbjct: 134 LFLEENNNW--KTLLIYGSTGLGKTHLLHAVGNKFVQLFPQKNLMYIQTEDFLEKIYKAI 191

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMT 143
               T+      S D++ +     +L++DI  L+  +      F+I N ++  +  ++MT
Sbjct: 192 SEGGTKVEEFKNSFDNVDL-----LLIDDIQFLNNKEKLNEIFFNIFNRLNSKNKYIVMT 246

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF--IDKKLAAYI 201
           +   P S  +    + SR  +   +KI+ PD + ++K+I++     +I          +I
Sbjct: 247 SDKLPTSLKIDDR-MISRFNSGLSIKINKPDTESIKKIIIENIKKSRIKNPFSNLAIEFI 305

Query: 202 VQRMERSLVFAEKLVDKM 219
             R    +   E +++K+
Sbjct: 306 ALRFNSDIRTLEGVLNKI 323


>gi|110832862|ref|YP_691721.1| chromosomal replication initiator protein DnaA [Alcanivorax
           borkumensis SK2]
 gi|123345870|sp|Q0VT30|DNAA_ALCBS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|110645973|emb|CAL15449.1| chromosomal replication initiator protein DnaA [Alcanivorax
           borkumensis SK2]
          Length = 474

 Score = 72.1 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 76/244 (31%), Gaps = 45/244 (18%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG-------------KSCLA 81
             G +    +   +   A          P+           G             K+ L 
Sbjct: 139 NTGFTFSTFVEGKSNRMAAAAAQQVAENPASH---------GYNPLLLYGGVGLGKTHLM 189

Query: 82  NI-----------------WSDKSRSTRFSNI-AKSLDSI--LIDTRKPVLLEDIDLLDF 121
           +                   S++  +   S +  K+++       +   +L++DI     
Sbjct: 190 HAVGNELLRRNPNAKVVYLHSERFVADMISALRNKTINEFKRFYRSVDALLIDDIQFFAG 249

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            +    + FH  N++ +    +++T   FP         L SR        +  P+ +  
Sbjct: 250 KEQSQEEFFHTFNALLENGQQIILTCDKFPKEVDGLEERLKSRFGWGLSQPMEPPELETR 309

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             ++ K   + ++ +    A +I QR+  ++   E  + ++       G  I   L  E 
Sbjct: 310 VAILKKKAEEAKVDLPNDAAFFIAQRIRSNVRELEGALRRVIAHVRFTGAQIDIGLIKEA 369

Query: 239 LKET 242
           LK+ 
Sbjct: 370 LKDL 373


>gi|225011346|ref|ZP_03701799.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium
           MS024-3C]
 gi|225004508|gb|EEG42477.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium
           MS024-3C]
          Length = 210

 Score = 72.1 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 44/109 (40%)

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           +HQ    +++T+   PV        L SR K     ++  PD +    ++        + 
Sbjct: 1   MHQNGKQVILTSDKAPVDMQDIEQRLLSRFKWGLSAELQTPDFETRVSILKNKLYKDGVE 60

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + + +  Y+ + ++ ++   E  +  +   +      +   LA +++++
Sbjct: 61  MSEDIIDYVAKNIKTNVRELEGAIISLIAQSSFNKKEVNIDLAQQIVEK 109


>gi|121602078|ref|YP_989528.1| chromosomal replication initiation protein [Bartonella
           bacilliformis KC583]
 gi|120614255|gb|ABM44856.1| chromosomal replication initiator protein DnaA [Bartonella
           bacilliformis KC583]
          Length = 524

 Score = 72.1 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 32/207 (15%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANI 83
            F  P     + D  +  ++   A+    S        +      +    G GK+ L   
Sbjct: 175 VFGSPLDSRYTFDSFVEGASNRVALAAARSVAEGHKSALRFNPLFIHASVGLGKTHLLQA 234

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127
            +  +     S     L +     R    + D            IDLL  +D Q      
Sbjct: 235 IAAAALKRLTSTRVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGRS 294

Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                 H++N +      +++ A   P         + SRL+    ++I  PD +   ++
Sbjct: 295 IQYEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEAPDYEMRLEM 354

Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203
           + +     Q     I I   +  YI +
Sbjct: 355 LRQRLKIAQQDDNTIAISDDILEYIAK 381


>gi|13474648|ref|NP_106217.1| chromosomal replication initiation protein [Mesorhizobium loti
           MAFF303099]
 gi|14025403|dbj|BAB52003.1| chromosomal replication initiator protein; DnaA [Mesorhizobium loti
           MAFF303099]
          Length = 514

 Score = 72.1 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 70/228 (30%), Gaps = 50/228 (21%)

Query: 33  PRCLGISRDDLLVHSAIEQ--------------AVRLIDSWPSWPSRVVILVGPSGSGKS 78
           P     +    +   +                 AVR            + L    G GK+
Sbjct: 170 PLDPRYTFGSFIEGPSNRVAFAAAKAVAESQSSAVRF---------NPLFLHATVGLGKT 220

Query: 79  CLANIWSD-------KSRSTRFSNIAK--SLDSILIDTRKPVLLE---DIDLLDFNDTQL 126
            L    +        KSR    +         + + D     L E   DIDLL  +D Q 
Sbjct: 221 HLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLLIIDDMQF 280

Query: 127 F----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                      H+IN +      +++ A   P       P + SRL     +++S PD  
Sbjct: 281 LQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPRVRSRLNGGVALEMSAPDFA 340

Query: 177 FLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               ++    A     D  + I  ++  ++ + +  S    E   +++
Sbjct: 341 MRLGMLKLRLATARIDDASLDISDEILNHVARTVTGSGRELEGAFNQL 388


>gi|257783816|ref|YP_003179033.1| chromosomal replication initiator protein DnaA [Atopobium parvulum
           DSM 20469]
 gi|257472323|gb|ACV50442.1| chromosomal replication initiator protein DnaA [Atopobium parvulum
           DSM 20469]
          Length = 509

 Score = 71.7 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 84/247 (34%), Gaps = 49/247 (19%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVG 71
           K++   P  +E            ++ D  +V    E A +    + +     +  + + G
Sbjct: 139 KRRKSNPLYEET------SFNSNLTFDRFVVGDENELAHQHALNVANDAKGKANPLFIYG 192

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLD----------SILIDTRKPVLLE------D 115
            SG GK+ L     +   S     +    D          ++  +       E      +
Sbjct: 193 ASGLGKTHLLRAVQNYINSEDIERVCVYKDADAFVDDYVNAVRKNASGNAATELNNNYQN 252

Query: 116 IDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVC----LPDLCS 160
           ID+L  +D Q            F+I NS+      +++ A   P   G+        + S
Sbjct: 253 IDVLIIDDVQKLAGKAGTINFFFNIFNSLIDRGKQIILAADRTPAQLGMGSDGFDDRITS 312

Query: 161 RLKAATVVKISLPDDDFLEKVIV----KMFADRQIFI-----DKKLAAYIVQRMERSLVF 211
           R+    V+ I  P  +    +I     + F +R   +      ++++ Y+  +  +S+  
Sbjct: 313 RMSGGIVIGIESPSYEMKLNLIHVFCDRAFKERNSSLSVDDMPEEISRYMADKAGQSIRT 372

Query: 212 AEKLVDK 218
            E   ++
Sbjct: 373 LEGFCNR 379


>gi|38257742|sp|Q98BG9|DNAA_RHILO RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 490

 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 70/228 (30%), Gaps = 50/228 (21%)

Query: 33  PRCLGISRDDLLVHSAIEQ--------------AVRLIDSWPSWPSRVVILVGPSGSGKS 78
           P     +    +   +                 AVR            + L    G GK+
Sbjct: 146 PLDPRYTFGSFIEGPSNRVAFAAAKAVAESQSSAVRF---------NPLFLHATVGLGKT 196

Query: 79  CLANIWSD-------KSRSTRFSNIAK--SLDSILIDTRKPVLLE---DIDLLDFNDTQL 126
            L    +        KSR    +         + + D     L E   DIDLL  +D Q 
Sbjct: 197 HLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLLIIDDMQF 256

Query: 127 F----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                      H+IN +      +++ A   P       P + SRL     +++S PD  
Sbjct: 257 LQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPRVRSRLNGGVALEMSAPDFA 316

Query: 177 FLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               ++    A     D  + I  ++  ++ + +  S    E   +++
Sbjct: 317 MRLGMLKLRLATARIDDASLDISDEILNHVARTVTGSGRELEGAFNQL 364


>gi|16904933|gb|AAL30950.1| DNA polymerase initiator protein [Streptococcus pneumoniae]
          Length = 163

 Score = 71.7 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 24/158 (15%)

Query: 69  LVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILID---------------TR 108
           + G  G GK+ L N   ++       +      A+S  +  +D               + 
Sbjct: 1   IYGGPGLGKTHLLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSL 60

Query: 109 KPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
             +L++DI  L         + F+  N++H     +++T+   P         L +R   
Sbjct: 61  DLLLIDDIQSLSGKKVATQEEFFNTFNALHDKRKQIVLTSDRSPKHLEGLEERLVTRFSW 120

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
                I+ PD +    ++                 Y+ 
Sbjct: 121 GLTQTITPPDFETRIAILQSKTEHLGYNFQSDTLEYLA 158


>gi|260461961|ref|ZP_05810206.1| chromosomal replication initiator protein DnaA [Mesorhizobium
           opportunistum WSM2075]
 gi|259032208|gb|EEW33474.1| chromosomal replication initiator protein DnaA [Mesorhizobium
           opportunistum WSM2075]
          Length = 490

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 71/228 (31%), Gaps = 50/228 (21%)

Query: 33  PRCLGISRDDLLVHSAIEQ--------------AVRLIDSWPSWPSRVVILVGPSGSGKS 78
           P     +    +   +                 AVR            + L    G GK+
Sbjct: 146 PLDPRYTFGSFIEGPSNRVAFAAAKAVAESQSSAVRF---------NPLFLHATVGLGKT 196

Query: 79  CLANIWSD-------KSRSTRFSNIAK--SLDSILIDTRKPVLLE---DIDLLDFNDTQL 126
            L    +        KSR    +         + + D     L E   DIDLL  +D Q 
Sbjct: 197 HLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLLIIDDMQF 256

Query: 127 F----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                      H+IN +      +++ A   P       P + SRL     +++S PD  
Sbjct: 257 LQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPRVRSRLNGGVALEMSAPDFA 316

Query: 177 FLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               ++    A     D  + I +++  ++ + +  S    E   +++
Sbjct: 317 MRLGMLKLRLATARVDDASLDISEEILNHVARTVTGSGRELEGAFNQL 364


>gi|220904107|ref|YP_002479419.1| Chromosomal replication initiator DnaA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868406|gb|ACL48741.1| Chromosomal replication initiator DnaA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 482

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 78/256 (30%), Gaps = 33/256 (12%)

Query: 20  QPKNKEEQLFFSFPR--------CLGISRDDLLVHSAIEQAVRLID--SWPSWPSRVVIL 69
            P     Q     P             S  D +V      AV      S      R + +
Sbjct: 119 APARAPRQASLPLPSVAVYRDTQNWRYSFADFVVGPTNNMAVAAAQDVSRSCGCVRTLFV 178

Query: 70  VGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE-------DID 117
              SG GK+ LA      I  + + +      A+   S  +   +   +E       ++D
Sbjct: 179 NSSSGLGKTHLAQAVGRAISEEGTNARVGYLTAEEFASRFVTALRAQDIEGFKARFRELD 238

Query: 118 LLDFNDTQLFH-----------IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           +L   D   F            ++ S+       + T+   P         L S   +  
Sbjct: 239 VLLMEDVHFFQGKEKMQDMALAVVKSLQAKGGRAIFTSSFSPRELQKVDSQLVSHFCSGI 298

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +  +  P  D    ++ +     Q+ + + +   +  R+   +   E  ++ +   A   
Sbjct: 299 LTDMGRPTKDMRCDILGRKARTFQVLLPESVCDLLASRLTGDVRQMESCLNSLIFKARLL 358

Query: 227 GMGITRSLAAEVLKET 242
             G+   LA EVL + 
Sbjct: 359 NCGLNVDLAMEVLSQY 374


>gi|145641118|ref|ZP_01796699.1| DNA replication initiation factor [Haemophilus influenzae R3021]
 gi|145274279|gb|EDK14144.1| DNA replication initiation factor [Haemophilus influenzae 22.4-21]
          Length = 78

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 32/74 (43%)

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           + +++   D+   KV+      R   +  + A +++ R+ R +    + +D +D  +L  
Sbjct: 4   IYQLNSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQA 63

Query: 227 GMGITRSLAAEVLK 240
              +T     E+L 
Sbjct: 64  QRNLTIPFVKEILN 77


>gi|416271|dbj|BAA03630.1| DnaA protein [Spiroplasma citri]
          Length = 265

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 31/192 (16%)

Query: 73  SGSGKSCLANIWSDKSR--------------------STRFSNIAKSLDSIL---IDTRK 109
           SG GK+ L +   +K                      +    N    +        D   
Sbjct: 2   SGLGKTHLLHAIENKVNEIYKTNNRVKYLKADEFGKIAMDILNQGHEIIEAFKTSYDIYD 61

Query: 110 PVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            +L++DI LL      +   FHI NS  + +  +++T+  +P   G     + SR     
Sbjct: 62  CLLIDDIQLLAKRNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGL 121

Query: 167 VVKISLPD-DDFLEKVIVKMFADRQIFI-DKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
            + +  PD +  L+ +  K+     + +  ++   +I       +   E  + ++  LA+
Sbjct: 122 SIGLDSPDFETALKILEQKLKHQNNLGLFSEESLEFIALNFNSDVRKLEGAIKRLLFLAV 181

Query: 225 SRGMG---ITRS 233
                   IT +
Sbjct: 182 MNKKPNEIITLA 193


>gi|319407986|emb|CBI81640.1| chromosomal replication initiator protein DnaA [Bartonella
           schoenbuchensis R1]
          Length = 524

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 32/219 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWSDK 87
           P     + ++ +  ++   A+    S        +      +    G GK+ L    +  
Sbjct: 179 PLDSRYTFENFVEGASNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQAIAAA 238

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +           L +     R    + D            IDLL  +D Q          
Sbjct: 239 ALKRLTPARVIYLTAEYFMWRFATAIRDNNALSFKEQLRDIDLLIIDDMQFLQGKSIQHE 298

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184
             H++N +      +++ A   P         + SRL+    ++I  PD +  L+ +  +
Sbjct: 299 FCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIEAPDYEMRLKMLQQR 358

Query: 185 MFADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +   RQ    I I   +  YI + +  S    E   +++
Sbjct: 359 LKVARQDDSAIEISNDILEYIAKTILGSGRDIEGAFNQL 397


>gi|49474936|ref|YP_032977.1| chromosomal replication initiation protein [Bartonella henselae
           str. Houston-1]
 gi|49237741|emb|CAF26933.1| Chromosomal replication initiator protein D [Bartonella henselae
           str. Houston-1]
          Length = 523

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 32/219 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWSDK 87
           P     + +  +  S+   A+    S        +      +    G GK+ L    +  
Sbjct: 178 PLDSRYTFESFVEGSSNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQAIAAA 237

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +           L +     R    + D            IDLL  +D Q          
Sbjct: 238 ALKRLKPARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKSIQNE 297

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P         + SRL+    ++I  PD +   +++ + 
Sbjct: 298 FCHLLNMLLDSAKQVVVAADRPPSELESLDLRVRSRLQGGVALEIEAPDYEMRLEMLRQR 357

Query: 186 FADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               Q     I I  ++  YI + +  S    E   +++
Sbjct: 358 LKVAQQDDNMIVISDEVLQYIAKTILGSGRDIEGAFNQL 396


>gi|61212585|sp|Q6G526|DNAA_BARHE RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 494

 Score = 70.6 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 32/219 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWSDK 87
           P     + +  +  S+   A+    S        +      +    G GK+ L    +  
Sbjct: 149 PLDSRYTFESFVEGSSNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQAIAAA 208

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +           L +     R    + D            IDLL  +D Q          
Sbjct: 209 ALKRLKPARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKSIQNE 268

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P         + SRL+    ++I  PD +   +++ + 
Sbjct: 269 FCHLLNMLLDSAKQVVVAADRPPSELESLDLRVRSRLQGGVALEIEAPDYEMRLEMLRQR 328

Query: 186 FADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               Q     I I  ++  YI + +  S    E   +++
Sbjct: 329 LKVAQQDDNMIVISDEVLQYIAKTILGSGRDIEGAFNQL 367


>gi|33321975|gb|AAQ06706.1|AF496049_1 chromosomal replication initiator protein [Lactobacillus
           delbrueckii subsp. lactis]
          Length = 148

 Score = 70.2 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%)

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
           +     ++MT+   P         L SR      V+I+ PD +    ++ K      + I
Sbjct: 1   YNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKKAESEGLEI 60

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           D+    Y+  +++ ++   E  + K+   A  +   I   LA   L + 
Sbjct: 61  DESTLDYVASQVDTNIRELEGALVKVQAQATIQKQDINIGLARSALADL 109


>gi|254429576|ref|ZP_05043283.1| chromosomal replication initiator protein DnaA [Alcanivorax sp.
           DG881]
 gi|196195745|gb|EDX90704.1| chromosomal replication initiator protein DnaA [Alcanivorax sp.
           DG881]
          Length = 474

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 76/244 (31%), Gaps = 45/244 (18%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG-------------KSCLA 81
             G +    +   +   A          P+           G             K+ L 
Sbjct: 139 NTGFTFSTFVEGKSNRMAAAAAQQVAENPASH---------GYNPLLLYGGVGLGKTHLM 189

Query: 82  NI-----------------WSDKSRSTRFSNI-AKSLDSI--LIDTRKPVLLEDIDLLDF 121
           +                   S++  +   S +  K+++       +   +L++DI     
Sbjct: 190 HAVGNELLRRNPNAKVVYLHSERFVADMISALRNKTINEFKRFYRSVDALLIDDIQFFAC 249

Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            +    + FH  N++ +    +++T   FP         L SR        +  P+ +  
Sbjct: 250 KEQSQEEFFHTFNALLENGQQIILTCDKFPKEVDGLEERLKSRFGWGLSQPMEPPELETR 309

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             ++ K   + ++ +    A +I QR+  ++   E  + ++       G  I   L  E 
Sbjct: 310 VAILKKKAEEAKVDLPNDAAFFIAQRIRSNVRELEGALRRVIAHVRFTGAQIDIGLIKEA 369

Query: 239 LKET 242
           LK+ 
Sbjct: 370 LKDL 373


>gi|87251938|dbj|BAE79507.1| DnaA [Sphingobium japonicum]
          Length = 263

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 24/197 (12%)

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVLL 113
           G GK+ L +  +    S   S     + +                      +   + +L+
Sbjct: 1   GLGKTHLLHAIARLFSSHSPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLLLI 60

Query: 114 EDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +DI  +        +  H IN +    + +++TA   P         + SRL    V  I
Sbjct: 61  DDIQFIAGKGSTQEEFLHTINDLIDSGARIVVTADRAPQMLDAIDARILSRLAGGLVADI 120

Query: 171 SLPDDDFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
                D    ++    A      +   +  ++ + +  ++   E   +K+       G  
Sbjct: 121 RPAGLDLRLAILEAKRAIAGDPPVPDAVVDFLARSIRSNVRELEGAFNKLIAYGQLTGRS 180

Query: 230 ITRSLAAEVLKETQQCD 246
           I    A  +L +  + +
Sbjct: 181 IDLEFAQAMLADAVRAN 197


>gi|332968623|gb|EGK07677.1| DNA-directed DNA replication initiator protein DnaA [Kingella
           kingae ATCC 23330]
          Length = 599

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 79/235 (33%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVI----LVGPSGSGKSCLANIWSDK--- 87
               + D L+     + A ++  S    P   +     + G +G GK+ L     ++   
Sbjct: 263 SPDYTFDTLVEGKGNQLAAQVAKSIAEKPGDSMYNPFFVYGATGLGKTHLVQAIGNQLIR 322

Query: 88  ----------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFNDTQLFHII 130
                                ++ +   DT          ++++DI  +   D  +    
Sbjct: 323 LNPKARVRYMHSDEYIKTFMATVRNKTWDTFKQQYLHYNLLIIDDIQFIAGKDRTMEEFF 382

Query: 131 NSIH---QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
                    D  +++T    P S       L SR      +++  P+ +    ++ +   
Sbjct: 383 FLFEHFHNRDQQIILTCDQLPSSLENMDKRLVSRFSWGMTIRLEPPELEMRINILERKAQ 442

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALSRGMGITRSLAAEVLKE 241
              I +++  A +I Q ++ S+   E  +++ +      +   I   LA + L++
Sbjct: 443 AMNISLEENAALFIAQNVKASVRDLEGALNRVIARCRFEKRNVIDIDLATDTLRD 497


>gi|887655|emb|CAA82286.1| dnaA [Wolbachia sp.]
          Length = 186

 Score = 69.8 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 1/115 (0%)

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + FH  N++   +  L+++A   P         + SRL    V  I+    +    ++  
Sbjct: 1   EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQA 60

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                 +++ K +  ++ + ++ ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 61  KVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 114


>gi|257062755|ref|YP_003142427.1| chromosomal replication initiator protein DnaA [Slackia
           heliotrinireducens DSM 20476]
 gi|256790408|gb|ACV21078.1| chromosomal replication initiator protein DnaA [Slackia
           heliotrinireducens DSM 20476]
          Length = 501

 Score = 69.8 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 80/252 (31%), Gaps = 51/252 (20%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90
              ++ +  +  ++   A  L  +    P       + + G SG GK+ L     +    
Sbjct: 152 ASSLTFESFVTGNSNMLAYSLAVAVAEAPGQPNTNPLFIYGKSGLGKTHLLRAIQN---- 207

Query: 91  TRFSNIAKSLDSILIDTRKPVL----------------------LEDIDLLDFNDTQ--- 125
                   ++D + ID+ + +                         D D+L  +D Q   
Sbjct: 208 -YVMETNPTMDVVYIDSSEFLAEYTSAVTAHERDRKSFQNFQNRFLDADMLLIDDVQFFQ 266

Query: 126 --------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
                   +F + N +      ++++A   P    +      SR      V +  P+ + 
Sbjct: 267 GKSATLDIVFQLFNHLVDAGKQVVLSADRAPKMIDID-ERYKSRFNQGATVNVDPPELEV 325

Query: 178 LEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALSRGMG 229
              +I     + +       + I   +  YI +    ++   +  V K +  +  S    
Sbjct: 326 KLGIIKNFINEYEATSESGPLNIPDDIQIYIAEISSSNVRELKSAVTKVIFQIRYSDSGE 385

Query: 230 ITRSLAAEVLKE 241
           IT S    +L++
Sbjct: 386 ITLSEVKTLLED 397


>gi|221195289|ref|ZP_03568345.1| chromosomal replication initiator protein DnaA [Atopobium rimae
           ATCC 49626]
 gi|221185192|gb|EEE17583.1| chromosomal replication initiator protein DnaA [Atopobium rimae
           ATCC 49626]
          Length = 531

 Score = 69.8 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 83/247 (33%), Gaps = 50/247 (20%)

Query: 35  CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86
              ++ D  +V    E A      + +        + + G SG GK+ L     +     
Sbjct: 171 TSKLTFDRFVVGEENEFAFEQALRVANDEKGKGNPLFIYGSSGLGKTHLLRSIQNYIIEN 230

Query: 87  -------KSRSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFNDTQ----------- 125
                     +T F +          D    +L E   DID+L  +D Q           
Sbjct: 231 DPSRLCVYKNATSFIDDYTRAMRNKADGAPQILTEAYQDIDVLIIDDVQKLAGKAGTLSF 290

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVC----LPDLCSRLKAATVVKISLPDDDFLEKV 181
            F   NS+      +++ A   P   G+        + +R+ +  V+ I  P  + ++  
Sbjct: 291 FFDTFNSLKTDGKQIVLAADRTPSDLGLGAEGFDERITTRVSSGIVIGIEQPSYE-MKVN 349

Query: 182 IVKMFADR-------------QIFIDKKLAAYIVQRMERSLVFAEKLVDKM---DNLALS 225
           ++  F +R             Q  + ++   Y+ +R  +S+   E   ++       A  
Sbjct: 350 LINTFCERIHNEAVTEGLTYLQGTLSEETIQYMAERSGQSIRVIEGFCNRCVGEQTRAEE 409

Query: 226 RGMGITR 232
           +G  ITR
Sbjct: 410 KGKSITR 416


>gi|218885110|ref|YP_002434431.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|226735802|sp|B8DN19|DNAA_DESVM RecName: Full=Chromosomal replication initiator protein DnaA
 gi|218756064|gb|ACL06963.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 498

 Score = 69.8 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 77/252 (30%), Gaps = 34/252 (13%)

Query: 28  LFFSFPRCLG-----ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSC 79
           L    P          S D  +V    E A      I         + +  GP G GK+ 
Sbjct: 146 LPLDMPAPNRALNWRFSFDSFVVGPNNELAFAASRGICRETLSADTLFLSSGP-GLGKTH 204

Query: 80  LANIW-------------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDID 117
           L                       +++  +   + +            + V   LLED+ 
Sbjct: 205 LMQAVGRALCEASNRAAPRVEYLTAEEFATRLIAALKAREVDRFKARYRDVDVLLLEDVH 264

Query: 118 LLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
            L   +    ++   + ++    S +++++             L SR  +  +  I  P 
Sbjct: 265 FLQGKERMQDEVLATVKALKSRGSRVVLSSSFAARDLKNLDTQLVSRFCSGFLAHIDKPG 324

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +   +++ +     Q+ +   +   +  R+   +   E  +  +   A      I+  +
Sbjct: 325 FETRRRILCEKARLHQVMLPDNVTDLLADRIRTDVRQIESCLHNLVLKAKLLNRQISMEM 384

Query: 235 AAEVLKETQQCD 246
           A EVL    Q +
Sbjct: 385 AWEVLGHYAQQE 396


>gi|114799907|ref|YP_759293.1| chromosomal replication initiator protein DnaA [Hyphomonas
           neptunium ATCC 15444]
 gi|114740081|gb|ABI78206.1| chromosomal replication initiator protein DnaA [Hyphomonas
           neptunium ATCC 15444]
          Length = 457

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 71/177 (40%), Gaps = 26/177 (14%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVV--ILVGPSGSGKSCLANI----WSDKS 88
             ++ D L+   + E AV L     +  P+     ++ GP G+GK+ L        + + 
Sbjct: 113 PAMTFDTLVTGPSNEIAVTLAKRIAAGLPAGTATTLIYGPPGTGKTHLMQALRLEAARRD 172

Query: 89  RSTRFSNI-AKSLDSILIDTRKP---------------VLLEDIDLLD---FNDTQLFHI 129
            + R   + A+   S  +D  K                +L++D+  +      +T+L+  
Sbjct: 173 TARRIVYLTAEEFMSAYLDGVKARDTSDLKKRLRAASILLIDDLHRIAGKPGTETELYQN 232

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           I  +      +++   + P         + S +K AT V++ LPD     ++++++ 
Sbjct: 233 IREVTSNGGQVVLVGDSAPGDASGFGQRMRSEIKGATAVEVELPDAGMRREILIRLA 289


>gi|61212967|sp|Q6MEG8|DNAA2_PARUW RecName: Full=Chromosomal replication initiator protein DnaA 2
          Length = 448

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 90/266 (33%), Gaps = 37/266 (13%)

Query: 11  FVPDKQKNDQPKNKEEQLF-FSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRV 66
            +P    +     KEEQ              ++ +     +    A   +   P      
Sbjct: 89  IIPPNHFSISSSQKEEQSPNSDVKLNNNYRFENFIEGPTNQFVKSAAMGVALRPGQSYNP 148

Query: 67  VILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSLDSILID------- 106
           + + G  G GK+ + +                  +     +++  SL +  +D       
Sbjct: 149 LFIHGGVGLGKTHILHSIGHYIKENHKKLRVQCITTEAFINDLVDSLRNKSVDRMKKFYR 208

Query: 107 -TRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR- 161
                +L++DI  L      + +L +   ++    + +++T+   P         L  R 
Sbjct: 209 SEIDVLLVDDIQFLQNRLNFEEELSYTFEALKNKGAQIVITSDKPPSLLK-----LSERT 263

Query: 162 ---LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
              ++   V  + +P+ +    ++      + + I  K+A +I + +  ++   E  +++
Sbjct: 264 IGKMEGGLVAHMGIPELETRVAILQYKAEQKGLHIPHKVAFFIAEHIHNNVRQLEGAINR 323

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244
           +        + IT  L +  L+E  Q
Sbjct: 324 LSAHCRLLDLNITEELVSRTLREMLQ 349


>gi|46445941|ref|YP_007306.1| chromosomal replication initiation protein [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399582|emb|CAF23031.1| putative replication initiation protein dnaA [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 461

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 90/266 (33%), Gaps = 37/266 (13%)

Query: 11  FVPDKQKNDQPKNKEEQLF-FSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRV 66
            +P    +     KEEQ              ++ +     +    A   +   P      
Sbjct: 102 IIPPNHFSISSSQKEEQSPNSDVKLNNNYRFENFIEGPTNQFVKSAAMGVALRPGQSYNP 161

Query: 67  VILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSLDSILID------- 106
           + + G  G GK+ + +                  +     +++  SL +  +D       
Sbjct: 162 LFIHGGVGLGKTHILHSIGHYIKENHKKLRVQCITTEAFINDLVDSLRNKSVDRMKKFYR 221

Query: 107 -TRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR- 161
                +L++DI  L      + +L +   ++    + +++T+   P         L  R 
Sbjct: 222 SEIDVLLVDDIQFLQNRLNFEEELSYTFEALKNKGAQIVITSDKPPSLLK-----LSERT 276

Query: 162 ---LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
              ++   V  + +P+ +    ++      + + I  K+A +I + +  ++   E  +++
Sbjct: 277 IGKMEGGLVAHMGIPELETRVAILQYKAEQKGLHIPHKVAFFIAEHIHNNVRQLEGAINR 336

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244
           +        + IT  L +  L+E  Q
Sbjct: 337 LSAHCRLLDLNITEELVSRTLREMLQ 362


>gi|302341445|ref|YP_003805974.1| chromosomal replication initiator protein DnaA [Desulfarculus
           baarsii DSM 2075]
 gi|301638058|gb|ADK83380.1| chromosomal replication initiator protein DnaA [Desulfarculus
           baarsii DSM 2075]
          Length = 442

 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 33/247 (13%)

Query: 25  EEQLFFS---FPRCLGISR---DDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGS 75
             QL             SR   ++ +     E A     +  +  S     + LV  +G 
Sbjct: 92  ARQLTLPSLGLDHPQLNSRYRFENYIAGGGNEYACAAAKAMANGQSFFGGALYLVSGTGL 151

Query: 76  GKSCLANI---------------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           GKS L                        ++++  S   +   +            +LLE
Sbjct: 152 GKSHLTQAIGHHVLDGERPCRVSYLTAEDFANQMISALRAKRMEQFKDRFRRGCDVLLLE 211

Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++  L   D    +L + ++++      ++ T    P         L SRL  +  V I 
Sbjct: 212 EVPFLAGKDKTQEELVYTLDALANAGKRIIFTGNQPPAQIKNLGRRLRSRLDGSVTVPIE 271

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            PD     +++        +    +    + + +   +      ++ M   +   G  + 
Sbjct: 272 PPDHQTRVRILRSEAQRLGVVSPVEPLELLAEAISGDVRRLISALNGMAARSALTGRPMD 331

Query: 232 RSLAAEV 238
            +LAAEV
Sbjct: 332 LALAAEV 338


>gi|297565027|ref|YP_003683999.1| AAA ATPase [Meiothermus silvanus DSM 9946]
 gi|296849476|gb|ADH62491.1| AAA ATPase [Meiothermus silvanus DSM 9946]
          Length = 254

 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75
           +++  P+  E  L   FPR        + VH     A+  +  +      ++ L GP G 
Sbjct: 77  RRHTAPRLLERDL-EGFPRYRAYLEKPVEVHGGNRTAIGAVQGYQ---GGLLYLWGPPGV 132

Query: 76  GKSCLA-NIWSDKSRSTRFSNIAKSLD-----------SILIDTRKPVLLEDID---LLD 120
           GK+ LA  +    ++  RF      LD             ++ + + ++++D+       
Sbjct: 133 GKTHLALRLAYRLAQEGRFVRFKSELDFLAEERLAAVGEAVLPSYERLVIDDVGKSRPTP 192

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL----CSRLKAATVVKISLPD 174
           F   +L+ +          L++TA   P ++   L DL     SR+    V  +  PD
Sbjct: 193 FTLERLYALFEGGSTGRYDLILTANLPPEAYARRLGDLGEAVLSRIMGGLVASVEGPD 250


>gi|209547613|ref|YP_002279530.1| chromosomal replication initiation protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209533369|gb|ACI53304.1| chromosomal replication initiator protein DnaA [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 516

 Score = 69.0 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P     + D  +  S+   A+     I    S   R   + +    G GK+ L    ++ 
Sbjct: 174 PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGSGAVRFNPLFIHSTVGLGKTHLLQAIANA 233

Query: 88  S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127
           +    R+ R   +         +  I     + L+D    IDLL  +D Q          
Sbjct: 234 AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 293

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184
             H++N +      +++ A   P       P + SRL+    ++   PD +  LE +  +
Sbjct: 294 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEFDAPDYEMRLEILRRR 353

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVF 211
           + A R       + A ++Q + R++  
Sbjct: 354 LAAARLEDPSLDIPAELLQHVARNVTA 380


>gi|49473788|ref|YP_031830.1| chromosomal replication initiation protein [Bartonella quintana
           str. Toulouse]
 gi|49239291|emb|CAF25617.1| Chromosomal replication initiator protein D [Bartonella quintana
           str. Toulouse]
          Length = 523

 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 32/207 (15%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANI 83
            F  P     + +  +  S+   A+    S        +      +    G GK+ L   
Sbjct: 174 VFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQA 233

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127
            +  +           L +     R    + D            IDLL  +D Q      
Sbjct: 234 VAAAALKRLMPARVIYLTAEYFMWRFATAIRDNAALSFKEQLRDIDLLIIDDMQFLQGKS 293

Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                 H++N +      +++ A   P         + SRL+    ++I +PD +   K+
Sbjct: 294 IQNEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEVPDYEMRLKM 353

Query: 182 IVKMFA-----DRQIFIDKKLAAYIVQ 203
           + +        D  + I  ++  YI +
Sbjct: 354 LRQRLKVVQQDDNMVVISDEVLQYIAK 380


>gi|119505644|ref|ZP_01627715.1| DNA replication initiation factor [marine gamma proteobacterium
           HTCC2080]
 gi|119458587|gb|EAW39691.1| DNA replication initiation factor [marine gamma proteobacterium
           HTCC2080]
          Length = 139

 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 10/136 (7%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL    P    ++ ++      + Q +  +D+      + + L GP+G+GKS L    S
Sbjct: 3   DQLPLKIPLDNDLNLNNFQPRRDLLQLLTGVDALLGGADQSLFLWGPTGTGKSHLLQGIS 62

Query: 86  DKSRSTRF----SNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFHIINSIHQ 135
               +       + + +     ++D   T + VL++DI L+   +     LFH  N +  
Sbjct: 63  RTIGARALYLPMTELLQYSPEAVLDGVVTSEAVLVDDIQLIVGREDWQEALFHSFNRLKA 122

Query: 136 YDSSLLMTARTFPVSW 151
                + +    P   
Sbjct: 123 AGIPQVYSGLAPPAQM 138


>gi|320527128|ref|ZP_08028315.1| replication initiator protein DnaA [Solobacterium moorei F0204]
 gi|320132456|gb|EFW24999.1| replication initiator protein DnaA [Solobacterium moorei F0204]
          Length = 457

 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 29/223 (13%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS--- 85
            P     + D+ +V     ++     +    P +    + + G SG GK+ L    +   
Sbjct: 113 LPIQKDRNFDNFVVGDCNRESHAAALACAMSPGKFFNPLFIYGNSGLGKTHLLMSIANYV 172

Query: 86  ---DKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQ 125
              + ++   ++   K +++++   R                +L++DI  L   +     
Sbjct: 173 LKENPTKKVYYTESLKFVETVVNAIRNNKIDEFKQYMYSVDLLLVDDIQFLAGKEKSHEV 232

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184
            F I N +      + + +   P         L SR  +   V I  P+ +  L  + +K
Sbjct: 233 FFTIYNELVNNRKQICIASDRLPKEIKGLEDRLISRFSSGLSVGIDSPESETSLAILQMK 292

Query: 185 -MFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              +   I  +D+    YI      ++   E   +++   A+ 
Sbjct: 293 IKTSSYSIEDVDQDGLNYIASNFSGNVRDLEGAWNRVLFYAIQ 335


>gi|238021640|ref|ZP_04602066.1| hypothetical protein GCWU000324_01542 [Kingella oralis ATCC 51147]
 gi|237866254|gb|EEP67296.1| hypothetical protein GCWU000324_01542 [Kingella oralis ATCC 51147]
          Length = 519

 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 80/235 (34%), Gaps = 28/235 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVI----LVGPSGSGKSCLANIWSDK--- 87
               + + L+     + A  +  S    P   +     + G +G GK+ L     ++   
Sbjct: 183 SPDYTFETLVEGKGNQLAANVAKSIAEKPGDSMYNPFFVYGSTGLGKTHLVQAIGNELLR 242

Query: 88  ----------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFNDTQLFHII 130
                                ++ +   DT          ++++DI  +   D  +    
Sbjct: 243 LNPKAKVRYMHSDEYLKTFMATVRNKTWDTFKQQYLHYNLLIIDDIQFISGKDRTMEEFF 302

Query: 131 NSIH---QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
                    D  +++T    P S       L SR      +++  P+ +    ++ +   
Sbjct: 303 FLFEHFHSRDQQIILTCDQLPSSLEDMDKRLVSRFSWGMTIRLEPPELEMRVDILERKAQ 362

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALSRGMGITRSLAAEVLKE 241
              I +++  A +I Q +++++   E  +++ +     S+   I   LA + L++
Sbjct: 363 AAGIMLEEDAATFIAQNVKQNVRELEGALNRVIARCRFSKASTIDIDLATDALQD 417


>gi|168702517|ref|ZP_02734794.1| chromosomal replication initiator protein DnaA [Gemmata
           obscuriglobus UQM 2246]
          Length = 347

 Score = 69.0 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 81/227 (35%), Gaps = 26/227 (11%)

Query: 43  LLVHSAIEQAVRLIDS------WPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95
            LV      AVR + S          P    V+L GP G+GKS L+     +  +T    
Sbjct: 27  FLVLPENRVAVRALRSVCRSVLTRRRPGANPVVLHGPPGTGKSRLSASLVQQLANTSDGV 86

Query: 96  IAKSLDSILIDTRKPVLLED-----IDLLDFNDTQLFHIINSIHQYDSSLL--------- 141
            A+ + +  +       L+D      DLL   D Q  H+     +  + LL         
Sbjct: 87  SAQVVSAGDVSRAPDEGLDDDVFVSCDLLALEDVQ--HLSTRAAEDATELLDRRTARRRA 144

Query: 142 --MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
             +TA   P         L SRL +  VV++          ++ +    RQ+ +      
Sbjct: 145 TVVTASAGPAQLAHLPQRLTSRLSSGLVVRLEPLSAPSRLAILAEAARQRQVRLTPDALE 204

Query: 200 YIVQRME-RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           ++  +     +     L+  +  +A +    +TR+   + L ++ Q 
Sbjct: 205 WLASQTTGGGVRTTLGLLQNLAQVAAAFPGALTRADVQQALADSGQP 251


>gi|283768635|ref|ZP_06341547.1| chromosomal replication initiator protein DnaA [Bulleidia extructa
           W1219]
 gi|283105027|gb|EFC06399.1| chromosomal replication initiator protein DnaA [Bulleidia extructa
           W1219]
          Length = 453

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 30/214 (14%)

Query: 40  RDDLLVHSAI----EQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANIWSD-------- 86
            ++ ++          A  + ++    W    + + G SG GK+ L    ++        
Sbjct: 120 FENFVIGDCNRESQAAAYAVSLNPGQLW--NPLFIYGNSGLGKTHLLMAIANYIKKHQPE 177

Query: 87  ---------KSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQ---LFHIIN 131
                    K   T    +             +   +L++DI  +   +      F I  
Sbjct: 178 KKVYYTESTKFVETVVHALQTGTIDAFKRYMYSLDVLLIDDIQFIAGKEKSHEIFFTIYE 237

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
            +      + +T+   P         L SR      V I  P+ +    ++ +       
Sbjct: 238 EMVNNRKQVCITSDREPKDIKDLEDRLASRFLNGLTVGIDSPEFETARAILNQKIKVNDN 297

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            ID++   YI      ++   E  ++++   A+ 
Sbjct: 298 SIDEEGMNYIASNFAGNVRELEGALNRVLFYAIQ 331


>gi|61212583|sp|Q6G0V6|DNAA_BARQU RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 494

 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 32/207 (15%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANI 83
            F  P     + +  +  S+   A+    S        +      +    G GK+ L   
Sbjct: 145 VFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQA 204

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127
            +  +           L +     R    + D            IDLL  +D Q      
Sbjct: 205 VAAAALKRLMPARVIYLTAEYFMWRFATAIRDNAALSFKEQLRDIDLLIIDDMQFLQGKS 264

Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                 H++N +      +++ A   P         + SRL+    ++I +PD +   K+
Sbjct: 265 IQNEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEVPDYEMRLKM 324

Query: 182 IVKMFA-----DRQIFIDKKLAAYIVQ 203
           + +        D  + I  ++  YI +
Sbjct: 325 LRQRLKVVQQDDNMVVISDEVLQYIAK 351


>gi|254295380|ref|YP_003061403.1| chromosomal replication initiator protein DnaA [Hirschia baltica
           ATCC 49814]
 gi|254043911|gb|ACT60706.1| chromosomal replication initiator protein DnaA [Hirschia baltica
           ATCC 49814]
          Length = 500

 Score = 67.9 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 31/260 (11%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVI 68
           V    +N +  +K+E + F+    L  + D L+V  + + A  +     S    P  VV+
Sbjct: 131 VKASAENTKVADKKESVDFTQGVDLTQTFDTLVVGDSNQLAANIARKVASGIVGPVSVVL 190

Query: 69  LVGPSGSGKSCLANI----WSDKSRS----------------TRFSNIAKSLDSILIDTR 108
             G  G GK+ L        + ++++                        S     I   
Sbjct: 191 FYGAHGVGKTHLLRAIEHDCAVQTKAKSAVYMSAEDFMLSFVEGVRQKDTSAQRNRIRNA 250

Query: 109 KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             VLL+D+ L+      L   F  + ++      ++++A   P         +   ++  
Sbjct: 251 DIVLLDDLQLITSRAATLKEFFQHLRAVTSNGGKVVLSADAAPTRLECLDDRMRDDIQGG 310

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
            VV++  P+ +   ++I    A  +       ++      + +R+  S       V  + 
Sbjct: 311 VVVEVHRPEIEMRAEIIRSKIAIIKEDFPEFSLEDAWIDMMAERLTASGRALYGAVRNVF 370

Query: 221 NLALSRGMGITRSLAAEVLK 240
              +     +T +     ++
Sbjct: 371 AGTVLANKPVTEAAVENAIR 390


>gi|294788716|ref|ZP_06753957.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Simonsiella muelleri
           ATCC 29453]
 gi|294483198|gb|EFG30884.1| DNA replication initiator protein, transcriptional regulator of
           replication and housekeeping genes [Simonsiella muelleri
           ATCC 29453]
          Length = 546

 Score = 67.5 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 83/257 (32%), Gaps = 28/257 (10%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVI---- 68
           P   +  + K   EQ           + D L+       A  +  S    P   +     
Sbjct: 188 PSAIEIAKAKEDAEQRHSQTNLSPEYTFDTLVEGKGNHLAAAVAKSIAEKPGDSMYNPFF 247

Query: 69  LVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILIDT-------R 108
           + G +G GK+ L     ++                        ++ +   DT        
Sbjct: 248 VYGSTGLGKTHLVQAIGNELLKLNTKARVRYMHSDEYLKTFMATVRNKTWDTFKQQYLHY 307

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIH---QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             ++++DI  +   D  +             +  +++T    P S       L SR    
Sbjct: 308 NLLIIDDIQFIQGKDRTMEEFFFLFEHFHSRNQQIILTCDQLPSSLENMEKRLISRFSWG 367

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLAL 224
             +K+  P+ +    ++ +      I + +  A +I Q +++++   E  +++ +     
Sbjct: 368 MTIKLEPPELEMRVDILERKAEAVGITLLEDAALFIAQNVKQNVRELEGALNRVLARCRF 427

Query: 225 SRGMGITRSLAAEVLKE 241
            +   I   LA + L++
Sbjct: 428 EKRTTIDIDLATDALQD 444


>gi|86169617|gb|ABC87048.1| chromosomal replication initiation protein [Weissella kandleri]
          Length = 220

 Score = 67.1 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 16/166 (9%)

Query: 84  WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSL 140
           W+D  R  R +   K+  ++ +     +L++DI LL   +    + F+  N+I +    +
Sbjct: 13  WTDALRFNRTNEFKKAYRNVDL-----LLVDDIQLLADKENVQEEFFNTFNAITRDGHQI 67

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           ++T+   P         L SR        ++ PD +    ++     + QI I   + + 
Sbjct: 68  VLTSDKLPKDIKGIEDRLVSRFAMGYSANLTQPDPETKIAILKNKAEESQIEISYDVLSE 127

Query: 201 IVQRME---RSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKET 242
           I   +    R L     K+V K+          +T     E+LK+ 
Sbjct: 128 IANAVNTNVRDLEGVFKKVVAKIK----ISNSEVTVDAIREILKDL 169


>gi|304314451|ref|YP_003849598.1| replication factor C, large subunit [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587910|gb|ADL58285.1| replication factor C, large subunit [Methanothermobacter
           marburgensis str. Marburg]
          Length = 470

 Score = 67.1 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 39/212 (18%)

Query: 43  LLVHSAIEQAVRLIDSW-PSW----PSRVVILVGPSGSGKSCLANIWSDK-SRSTRFSNI 96
               +  ++A+  I  W   W    P   ++LVGP G+GK+ +A+I   + S +   +  
Sbjct: 12  FEEVAGNQKAIAEIKKWISGWKAGEPQPPLLLVGPPGTGKTTMAHIIGREFSDTLELNAS 71

Query: 97  AKSLDSILIDTRK--------------PVLLEDIDLLDFND-TQLFHIINSI-HQYDSSL 140
            K     ++ T                 ++L+++D +  N+       IN I  +    +
Sbjct: 72  DKRSQDAIMRTAGEASATRSLFNHDLKLIILDEVDGIHGNEDRGGVQAINRILRESRHPI 131

Query: 141 LMTARTFPVSWGVCLPDLCSRLKA----ATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
           ++TA                RL++      V+ I       +   + ++     I     
Sbjct: 132 VLTANDPYSK----------RLQSIKPKCKVINIRKVHTSSIAAALKRICRAEGIDCPDD 181

Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +   + +   RS       ++ ++ +A     
Sbjct: 182 VLKELAK---RSHGDLRSAINDLEAVASGEER 210


>gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040304|gb|ACT57100.1| chromosomal replication initiation protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 502

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 35/226 (15%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--------RVVILVGPSGSGKSCL 80
            F  P          +  S+   A+    S     S          + +    G GK+ L
Sbjct: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF- 127
               ++ S   + +     L +     R    + D            IDLL  +D Q   
Sbjct: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272

Query: 128 ---------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
                    H++NS+      ++  A   P       P + SRL+    V + L D +  
Sbjct: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332

Query: 179 EKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             ++    A  Q     + I++++  ++ + +  S    +   +++
Sbjct: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378


>gi|164456444|dbj|BAF97725.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456462|dbj|BAF97734.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456468|dbj|BAF97737.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456472|dbj|BAF97739.1| replication initiation protein [Corynebacterium macginleyi]
          Length = 159

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 46/113 (40%)

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++HQ +  +++++   P         L +R +   +  I  PD +    +++K  A  
Sbjct: 2   FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              +D+ +   I  R E S+   E  + ++   +      I   +A   L++ 
Sbjct: 62  GTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDL 114


>gi|164456442|dbj|BAF97724.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456446|dbj|BAF97726.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456450|dbj|BAF97728.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456452|dbj|BAF97729.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456460|dbj|BAF97733.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456464|dbj|BAF97735.1| replication initiation protein [Corynebacterium macginleyi]
          Length = 159

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 46/113 (40%)

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++HQ +  +++++   P         L +R +   +  I  PD +    +++K  A  
Sbjct: 2   FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              +D+ +   I  R E S+   E  + ++   +      I   +A   L++ 
Sbjct: 62  GTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDL 114


>gi|269926921|ref|YP_003323544.1| IstB domain protein ATP-binding protein [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790581|gb|ACZ42722.1| IstB domain protein ATP-binding protein [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 280

 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 33/165 (20%)

Query: 40  RDDL--LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW--------SDKSR 89
            D+    VH +   A      +   P   ++L GP GSGK+ LA              S 
Sbjct: 97  FDNFDPSVHPSAATAFEATKQYAENPHGWIMLCGPCGSGKTHLAAAIVNYSISVRQSNSL 156

Query: 90  STRFSNIAKSLDS--------------ILIDTRKPVLLEDI---DLLDFNDTQLFHIINS 132
                ++   L                ++I     ++L+D+   +   +   +L+ +IN 
Sbjct: 157 FMIVPDLLDYLRETFNPKSDITYDERFLMIREVPLLVLDDLGTENATSWAREKLYQLINH 216

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRL---KAATVVKISLPD 174
            +  +   ++T    P +    +    SRL   +    + +  PD
Sbjct: 217 RYNSEMPTVITTNQPPEAIDDRI---RSRLSDTRLVMHIVLDAPD 258


>gi|86169611|gb|ABC87045.1| chromosomal replication initiation protein [Weissella confusa]
          Length = 233

 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 9/161 (5%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTA 144
           + + R    A         +   +L++DI  L   D    + FH  N+I + +  +++T+
Sbjct: 26  TDALRRGANATEAFKQEYRSADLLLVDDIQFLADKDKIQEEFFHTFNAITRENHQIVLTS 85

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P         L +R        I+ PD      ++        + I   +   I   
Sbjct: 86  DKLPKEIPGLEMRLVTRFAQGYSANITKPDLPTRVAILRNKAEQENLNIPNDVIDEIAAA 145

Query: 205 ME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           ++   R L      V      A +    +T   A ++L+  
Sbjct: 146 VDTNVRDLEGVFNQVAGKLRFATA---PVTVETARDILETM 183


>gi|164456454|dbj|BAF97730.1| replication initiation protein [Corynebacterium accolens]
          Length = 159

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 46/113 (40%)

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++HQ +  +++++   P         L +R +   +  I  PD +    +++K  A  
Sbjct: 2   FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              +D+ +   I  R E S+   E  + ++   +      I   +A   L++ 
Sbjct: 62  GTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDL 114


>gi|320535593|ref|ZP_08035690.1| replication initiator protein DnaA [Treponema phagedenis F0421]
 gi|320147556|gb|EFW39075.1| replication initiator protein DnaA [Treponema phagedenis F0421]
          Length = 466

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 30/194 (15%)

Query: 77  KSCLANIWSDK----SRSTRFSNIAKSLDSILIDTRKP---------------VLLEDID 117
           K+ L     ++    +        A+S  +  I                    +L++DI 
Sbjct: 167 KTHLMQAIGNEIYRTTDLNIIYVTAESFSNEFISALGSKKTQEFKNKYRKADVLLIDDIH 226

Query: 118 ---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
                D    +LFH  N++++    ++ T              L SR      V +++P 
Sbjct: 227 FFQNKDGLQEELFHTFNALYESGRQIVFTCDRPIKELKNFSERLKSRCTRGLNVDLTMPS 286

Query: 175 DDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            +    +++K          D+ I I  ++   I Q +  ++   E  + K+       G
Sbjct: 287 FETRCAILIKKLEIYNKSNPDKNIKISDEIIHLIAQNVFSNVRDLEGCLTKIIAFTEISG 346

Query: 228 MGITRSLAAEVLKE 241
             +T  +  ++LK+
Sbjct: 347 -EVTIDIIPDLLKD 359


>gi|315121828|ref|YP_004062317.1| chromosomal replication initiation protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495230|gb|ADR51829.1| chromosomal replication initiation protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 507

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 35/222 (15%)

Query: 33  PRCLGISRDDLLVHSAIEQAV------RLIDSWPSWPSRV--VILVGPSGSGKSCLANIW 84
           P          +   +   A+        +DS      R+  + +    G GK+ L    
Sbjct: 162 PLDSRFVFSTFIDGPSNRVALTAAQNIAEVDSHGCTTVRLNPLFIHASVGLGKTHLLQSI 221

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF----- 127
           ++ +   + +     L +     R    + D            IDLL  +D Q       
Sbjct: 222 ANAAIKRQPNLRVVYLTAEYFMWRFASAIRDNHALNLKDSLRNIDLLLIDDMQFLQGKLI 281

Query: 128 -----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
                H++NS+      ++  A   P       P + SRL+    V +   D D    ++
Sbjct: 282 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVAVPLGSHDYDMRLSIL 341

Query: 183 VKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               A  Q     + I++++  ++ + +  S    +   +++
Sbjct: 342 KNRLAISQKENPTLNINEEVLTHVARTITTSGRELDGAFNQL 383


>gi|164456438|dbj|BAF97722.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456440|dbj|BAF97723.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456448|dbj|BAF97727.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456456|dbj|BAF97731.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456458|dbj|BAF97732.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456466|dbj|BAF97736.1| replication initiation protein [Corynebacterium macginleyi]
 gi|164456470|dbj|BAF97738.1| replication initiation protein [Corynebacterium macginleyi]
          Length = 159

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 46/113 (40%)

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            N++HQ +  +++++   P         L +R +   +  I  PD +    +++K  A  
Sbjct: 2   FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              +++ +   I  R E S+   E  + ++   +      I   +A   L++ 
Sbjct: 62  GTEVERSVLELIASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDL 114


>gi|217976201|ref|YP_002360348.1| chromosomal replication initiation protein [Methylocella silvestris
           BL2]
 gi|217501577|gb|ACK48986.1| chromosomal replication initiator protein DnaA [Methylocella
           silvestris BL2]
          Length = 506

 Score = 65.6 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 70/208 (33%), Gaps = 25/208 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------ 104
           P   + L    G GK+ L    +  +++     I  + +  +                  
Sbjct: 200 PYNPLYLHASVGLGKTHLLQAVAHMAQTMSRRVIYLTAERFMYGFVSALKAQTAIAFKEK 259

Query: 105 IDTRKPVLLEDIDLLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           +     ++++DI  L       +  H +N++      +++ A   P         + SRL
Sbjct: 260 LRGIDILVIDDIQFLQGKSIQQEFCHTLNALIDAHRQIVIAADRPPSELESLDERVRSRL 319

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
                V+I   D+    +++    A  +       +   + A++   ++ +    +  V+
Sbjct: 320 AGGLCVEIGGLDEQLRVRILEGRIAAAKHAHPNFEVPSAVTAFVAHAIQTNGRDLDGAVN 379

Query: 218 KMDNLALSRGMGITRSLAAEVLKETQQC 245
           ++   A   G  +    A   +++  + 
Sbjct: 380 RLLAHASLNGAPLEVETAELAIRDLVRA 407


>gi|13508425|ref|NP_110375.1| chromosomal replication initiation protein [Mycoplasma pneumoniae
           M129]
 gi|2494136|sp|Q59549|DNAA_MYCPN RecName: Full=Chromosomal replication initiator protein DnaA
 gi|1209520|gb|AAC43648.1| DnaA protein [Mycoplasma pneumoniae]
 gi|1673817|gb|AAB95804.1| chromosomal replication initiator protein DnaA [Mycoplasma
           pneumoniae M129]
          Length = 439

 Score = 65.6 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 30/164 (18%)

Query: 38  ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS--------- 85
            +  + +V     +       I          + + G +G GK+ L              
Sbjct: 105 FTFKNFVVGDGNRRVYEAGVRISETQDADFSPLFIYGETGLGKTHLLQAIGNDKFFHFPN 164

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLDFNDTQ-----------LF 127
            K +    S+ A+ + +      K           E +DLL  +DTQ           LF
Sbjct: 165 AKVKYVVSSDFAQEVVNAFYQKEKDQGIEKLKAAYESLDLLLIDDTQIFGKKEKTLEILF 224

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            I N++      ++  +   P       P + SR K+  ++KI 
Sbjct: 225 SIFNNLVSKGKQIVFVSDKTPDELANIDPRMVSRFKSGLLLKIE 268


>gi|331265608|ref|YP_004325238.1| chromosomal replication initiation protein [Streptococcus oralis
           Uo5]
 gi|326682280|emb|CBY99897.1| chromosomal replication initiation protein [Streptococcus oralis
           Uo5]
          Length = 167

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 21/161 (13%)

Query: 35  CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88
                 ++ +       A    + ++ +        + + G SGSGK+ L     +K   
Sbjct: 8   DNKYQFENFIEKDGNALAKKEALEVVKNLGL-KYNPLYIYGQSGSGKTHLLQAIGNKVLE 66

Query: 89  ----------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND----TQLFHIINSIH 134
                      +         +  +  +    ++++DI +L   D     + F++ NS H
Sbjct: 67  NNPEKRVKYISAKDLLENELEIQKVRSEKFDLLIVDDIQILGEKDDMIQEKFFNLFNSQH 126

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
             +  ++ +  + P         L  R K      ++  +D
Sbjct: 127 DMNKQMVFSGDSEPDQLENLNFHLIVRFKWGMTACLTSLED 167


>gi|301633565|gb|ADK87119.1| chromosomal replication initiator protein DnaA [Mycoplasma
           pneumoniae FH]
          Length = 439

 Score = 65.2 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 30/164 (18%)

Query: 38  ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS--------- 85
            +  + +V     +       I          + + G +G GK+ L              
Sbjct: 105 FTFKNFVVGDGNRRVYEAGVRISETQDADFSPLFIYGETGLGKTHLLQAIGNDKFFHFPN 164

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLDFNDTQ-----------LF 127
            K +    S+ A+ + +      K           E +DLL  +DTQ           LF
Sbjct: 165 AKVKYVVSSDFAQEVVNAFYQKDKDQGIEKLKAAYESLDLLLIDDTQIFGKKEKTLEILF 224

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            I N++      ++  +   P       P + SR K+  ++KI 
Sbjct: 225 SIFNNLVSKGKQIVFVSDKTPDELANIDPRMVSRFKSGLLLKIE 268


>gi|544176|sp|P35907|DNAA_WOLSP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|887654|emb|CAA82285.1| dnaA [Wolbachia sp.]
          Length = 186

 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 49/115 (42%), Gaps = 1/115 (0%)

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + F   N++   +  L+++A   P         + SRL    V  I+    +    ++  
Sbjct: 1   EFFKTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQA 60

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                 +++ K +  ++ + ++ ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 61  KVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 114


>gi|150395230|ref|YP_001325697.1| chromosomal replication initiation protein [Sinorhizobium medicae
           WSM419]
 gi|150026745|gb|ABR58862.1| chromosomal replication initiator protein DnaA [Sinorhizobium
           medicae WSM419]
          Length = 481

 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 32/233 (13%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPS 73
             P    +   F  P       D  +  S+   A+     I    +   R   + +    
Sbjct: 125 AAPARPHQTPLFGSPLDQRYGFDSFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSV 184

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDF 121
           G GK+ L    +  +  +  +     L +     R    + D            IDLL  
Sbjct: 185 GLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDLLII 244

Query: 122 NDTQLF----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +D Q            H++N +      +++ A   P         + SRL+    +++ 
Sbjct: 245 DDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEME 304

Query: 172 LPDDDFLEKVIVKMF-ADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            PD +   +++ +   A RQ    + I  ++ +++ + +  S    E   +++
Sbjct: 305 GPDYEMRLEMLKRRLEAARQDDATLEIPLEILSHVARNVTASGRELEGAFNQL 357


>gi|331013866|gb|EGH93922.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 80

 Score = 64.4 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 105 IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           ++  + V L+D+  +      +  LFH+ N +      LL+ A   P    V LPDL
Sbjct: 24  LEQYELVCLDDLQAIVGKPEWEEALFHLFNRLRDSGRRLLIAASKSPRELPVKLPDL 80


>gi|297521892|ref|ZP_06940278.1| DNA replication initiation factor [Escherichia coli OP50]
          Length = 151

 Score = 64.4 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 13/135 (9%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           N   QL          +               L +      S  + L    G+G+S L +
Sbjct: 17  NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 76

Query: 83  IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130
                   +  +  +  + K    +      ++    V +++I+ +  ++     +F + 
Sbjct: 77  AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 136

Query: 131 NSIHQYDS-SLLMTA 144
           N I +     LL+T 
Sbjct: 137 NRILESGKTRLLITG 151


>gi|227820588|ref|YP_002824558.1| chromosomal replication initiation protein [Sinorhizobium fredii
           NGR234]
 gi|227339587|gb|ACP23805.1| chromosomal replication initiator protein DnaA [Sinorhizobium
           fredii NGR234]
          Length = 480

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 29/217 (13%)

Query: 24  KEEQLF-FSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGK 77
           K  Q   F  P     + +  +  S+   A+     I    +   R   + +    G GK
Sbjct: 128 KPVQAPLFGSPLDQRYNFESFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSVGLGK 187

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQ 125
           + L    +  +  +  +     L +     R    + D            IDLL  +D Q
Sbjct: 188 THLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDLLVIDDMQ 247

Query: 126 LF----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD- 174
                       H++N +      +++ A   P         + SRL+    +++  PD 
Sbjct: 248 FLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEMEGPDY 307

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
           D  LE +  ++   RQ      +   I+  + RS+  
Sbjct: 308 DMRLEMLKRRLDTARQDDTSLDIPQEILSHVARSVTA 344


>gi|225619164|ref|YP_002720390.1| chromosomal replication initiation protein [Brachyspira
           hyodysenteriae WA1]
 gi|225213983|gb|ACN82717.1| chromosomal replication initiation protein [Brachyspira
           hyodysenteriae WA1]
          Length = 461

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 69/220 (31%), Gaps = 28/220 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS------ 88
              D+ +  +             S P +    + + G  G GK+ L     +        
Sbjct: 128 FRFDNFIQGNNNRYVFEAAKYVSSNPGKEYNPLYIYGSVGIGKTHLLQAIGNSYMQNNPN 187

Query: 89  -----------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ------LFHIIN 131
                      R    S +      I     K + +  +D L   ++       LF I  
Sbjct: 188 AKVLYIDGSGFRDEYVSGLQSKKPEIFKRRYKSLDMLLLDDLQLLESAQETSKELFEIFQ 247

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++      ++  +   P         L +R + + ++ I  P  +    +I +   D   
Sbjct: 248 ALDNASKQMVFVSDKPPKELRNIEARLKNRFEKSLILSIEPPQYETRLAIIERKLFDLHT 307

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            ID+++  Y+ + +   +   E  +     L++   M IT
Sbjct: 308 SIDEEVMKYMAENITTDVRKIEGAIRA--YLSIRDLMKIT 345


>gi|86169603|gb|ABC87041.1| chromosomal replication initiation protein [Fructobacillus
           ficulneus]
          Length = 262

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI      +    + F+  N++ +    ++MT+  +P      L  L SR +A   
Sbjct: 56  LLIDDIQFWSGKEKVQEEFFNTFNALTKDGKQIVMTSDRYPTDIPDLLTRLTSRFEAGIT 115

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLAL 224
             I  PD      ++  +     + I  ++   I ++++   RSL  A    +       
Sbjct: 116 QDIQKPDLPTRVAILRNLQERNDLNIPNEVLELIGEKIDTNVRSLEGAFHKFEAKVRY-- 173

Query: 225 SRGMGITRSLAAEVLKET 242
                 T   A  +L E 
Sbjct: 174 -MNKPATIETAQSILSEL 190


>gi|197118824|ref|YP_002139251.1| recombination factor protein RarA [Geobacter bemidjiensis Bem]
 gi|197088184|gb|ACH39455.1| stalled replication fork rescue ATPase [Geobacter bemidjiensis Bem]
          Length = 434

 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 26/194 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP GSGK+ LA I ++ +RS     S I   +  I    ++    ED        T
Sbjct: 52  LIFWGPPGSGKTTLARIIANATRSHFIFFSAIMSGIKEIREVVKEA---EDTLKYQGKRT 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  ++ A T   S+ V  P L SR     V+ +  
Sbjct: 109 ILFVDEIHRFNKSQQDAFLPHVERGTFTIIGATTENPSFEVIAP-LLSR---CKVLVLQP 164

Query: 173 PDDDFLEKVIVKMFADRQIFIDK----KLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRG 227
             D+ L K++    ADR+  + +      A  +    E++   A   ++ ++  + L+  
Sbjct: 165 LSDEDLLKILENALADRERGLGELELSATAEALAFMAEQAAGDARVALNTLETASRLAHQ 224

Query: 228 MGITRSLAAEVLKE 241
             IT   A E +++
Sbjct: 225 GEITLESAREAVQK 238


>gi|294851411|ref|ZP_06792084.1| chromosomal replication initiator protein DnaA [Brucella sp. NVSL
           07-0026]
 gi|294820000|gb|EFG36999.1| chromosomal replication initiator protein DnaA [Brucella sp. NVSL
           07-0026]
          Length = 566

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 221 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 280

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 281 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 339

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 340 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 399

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 400 RLASAQCEDASLDIGEEILAHVARTV 425


>gi|209554480|ref|YP_002284414.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|209541981|gb|ACI60210.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 457

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 33/206 (16%)

Query: 30  FSFPRCL-GISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVI----LVGPSGSGKSCLAN 82
           F+F   +   + ++L++     +AV+ I+S    ++ +  +     L G  G GK+ +  
Sbjct: 105 FNFSDEIMRYNFNNLVISDFNRKAVKAIESLLSTNYENSSMCNPLFLFGKVGIGKTHIVA 164

Query: 83  I----WSDKSRSTRF-------------SNIAKSLDSI-----LIDTRKPVLLEDIDLLD 120
                +++ + + +              S  AK    +      I +   ++ EDI  + 
Sbjct: 165 AAGNQFANSNPNLKIYYYEGQDFFRKFCSASAKGTSHVEEFKKEIASANLLIFEDIQNIQ 224

Query: 121 FNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
             D+     F+I N I      +++T+   P         + SRL +    KIS PD + 
Sbjct: 225 SRDSAAELFFNIFNDIKLNGGKIILTSDRTPNELNGFHDRIISRLASGLQCKISQPDKNE 284

Query: 178 LEKVIVKMFA-DRQIFIDKKLAAYIV 202
             K+I   F   ++  I  +   YI 
Sbjct: 285 AIKIINNWFEFKKKYQITDEAKEYIA 310


>gi|225550892|ref|ZP_03771841.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|225380046|gb|EEH02408.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 457

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 33/206 (16%)

Query: 30  FSFPRCL-GISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVI----LVGPSGSGKSCLAN 82
           F+F   +   + ++L++     +AV+ I+S    ++ +  +     L G  G GK+ +  
Sbjct: 105 FNFSDEIMRYNFNNLVISDFNRKAVKAIESLLSTNYENSSMCNPLFLFGKVGIGKTHIVA 164

Query: 83  I----WSDKSRSTRF-------------SNIAKSLDSI-----LIDTRKPVLLEDIDLLD 120
                +++ + + +              S  AK    +      I +   ++ EDI  + 
Sbjct: 165 AAGNQFANSNPNLKIYYYEGQDFFRKFCSASAKGTSHVEEFKKEIASANLLIFEDIQNIQ 224

Query: 121 FNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
             D+     F+I N I      +++T+   P         + SRL +    KIS PD + 
Sbjct: 225 SRDSAAELFFNIFNDIKLNGGKIILTSDRTPNELNGFHDRIISRLASGLQCKISQPDKNE 284

Query: 178 LEKVIVKMFA-DRQIFIDKKLAAYIV 202
             K+I   F   ++  I  +   YI 
Sbjct: 285 AIKIINNWFEFKKKYQITDEAKEYIA 310


>gi|171920679|ref|ZP_02931905.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|185178837|ref|ZP_02554521.2| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188024340|ref|ZP_02570604.2| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188518434|ref|ZP_02556546.2| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188524209|ref|ZP_03004269.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195867373|ref|ZP_03079377.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198273421|ref|ZP_03205957.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225551454|ref|ZP_03772400.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|171903415|gb|EDT49704.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|184209472|gb|EDU06515.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188018604|gb|EDU56644.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188998012|gb|EDU67109.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|195660031|gb|EDX53411.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195660849|gb|EDX54102.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198249941|gb|EDY74721.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225379269|gb|EEH01634.1| chromosomal replication initiator protein DnaA [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 457

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 33/206 (16%)

Query: 30  FSFPRCL-GISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVI----LVGPSGSGKSCLAN 82
           F+F   +   + ++L++     +AV+ I+S    ++ +  +     L G  G GK+ +  
Sbjct: 105 FNFSDEIMRYNFNNLVISDFNRKAVKAIESLLSTNYENSSMCNPLFLFGKVGIGKTHIVA 164

Query: 83  I----WSDKSRSTRF-------------SNIAKSLDSI-----LIDTRKPVLLEDIDLLD 120
                +++ + + +              S  AK    +      I +   ++ EDI  + 
Sbjct: 165 AAGNQFANSNPNLKIYYYEGQDFFRKFCSASAKGTSHVEEFKKEIASANLLIFEDIQNIQ 224

Query: 121 FNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
             D+     F+I N I      +++T+   P         + SRL +    KIS PD + 
Sbjct: 225 SRDSAAELFFNIFNDIKLNGGKIILTSDRTPNELNGFHDRIISRLASGLQCKISQPDKNE 284

Query: 178 LEKVIVKMFA-DRQIFIDKKLAAYIV 202
             K+I   F   ++  I  +   YI 
Sbjct: 285 AIKIINNWFEFKKKYQITDEAKEYIA 310


>gi|313902377|ref|ZP_07835780.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965]
 gi|313467308|gb|EFR62819.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965]
          Length = 513

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 91/254 (35%), Gaps = 43/254 (16%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGP 72
               +   +Q   +       + ++      LV        R I++        +IL GP
Sbjct: 21  RAAEERARQQAPLAERMRPR-TLEEFVGQQHLVGPG-RLLRRAIEADR---LGSIILWGP 75

Query: 73  SGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
            GSGK+ LA I +  +R+        +     L  ++ + R+   LE    + F D    
Sbjct: 76  PGSGKTTLARIIARTTRAHFEPLNAVTAGVGDLRRVVEEARERWALEGRSTVLFVDEV-- 133

Query: 128 HIINSIHQYD-------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
           H  N   Q           + +   T    +  C+P L SR   A + ++    DD + +
Sbjct: 134 HRWNRAQQDALLPHLESGLVALIGATTENPYFACVPPLVSR---ARIFRLEPLSDDDMRQ 190

Query: 181 VIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG------ 227
           ++++  AD  R +      +D     ++V+        A   ++ ++   L+        
Sbjct: 191 LLLRALADPERGLGRYRAEVDPAALEHLVRVAG---GDARTALNALELAVLTTPPGADGV 247

Query: 228 MGITRSLAAEVLKE 241
             IT + A E ++ 
Sbjct: 248 RRITLAAAEESIQR 261


>gi|237814482|ref|ZP_04593480.1| chromosomal replication initiator protein DnaA [Brucella abortus
           str. 2308 A]
 gi|237789319|gb|EEP63529.1| chromosomal replication initiator protein DnaA [Brucella abortus
           str. 2308 A]
          Length = 566

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 221 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 280

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 281 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 339

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 340 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 399

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 400 RLASAQCEDASLDIGEEILAHVARTV 425


>gi|306839965|ref|ZP_07472759.1| chromosomal replication initiator protein DnaA [Brucella sp. NF
           2653]
 gi|306404929|gb|EFM61214.1| chromosomal replication initiator protein DnaA [Brucella sp. NF
           2653]
          Length = 546

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 201 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405


>gi|254731347|ref|ZP_05189925.1| chromosomal replication initiation protein [Brucella abortus bv. 4
           str. 292]
          Length = 540

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399


>gi|306842704|ref|ZP_07475347.1| chromosomal replication initiator protein DnaA [Brucella sp. BO2]
 gi|306287150|gb|EFM58652.1| chromosomal replication initiator protein DnaA [Brucella sp. BO2]
          Length = 540

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399


>gi|306843603|ref|ZP_07476204.1| chromosomal replication initiator protein DnaA [Brucella sp. BO1]
 gi|306276294|gb|EFM57994.1| chromosomal replication initiator protein DnaA [Brucella sp. BO1]
          Length = 546

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 201 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405


>gi|254718225|ref|ZP_05180036.1| chromosomal replication initiation protein [Brucella sp. 83/13]
          Length = 540

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399


>gi|153007348|ref|YP_001368563.1| chromosomal replication initiation protein [Ochrobactrum anthropi
           ATCC 49188]
 gi|151559236|gb|ABS12734.1| chromosomal replication initiator protein DnaA [Ochrobactrum
           anthropi ATCC 49188]
          Length = 520

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 76/220 (34%), Gaps = 34/220 (15%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 175 PLDPRYTFDSFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 234

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 235 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 293

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-----DDFLE 179
           +  H++N++      +++ A   P         + SRL+    ++++ PD     +    
Sbjct: 294 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYDMRVEMLRR 353

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           ++ V    D  + I +++ +++ + +  S    E   +++
Sbjct: 354 RLAVAQAEDSSLNIGEEILSHVARTVTGSGRELEGAFNQL 393


>gi|189023269|ref|YP_001934037.1| chromosomal replication initiation protein [Brucella abortus S19]
 gi|225851547|ref|YP_002731780.1| chromosomal replication initiation protein [Brucella melitensis
           ATCC 23457]
 gi|297247409|ref|ZP_06931127.1| chromosomal replication initiator protein DnaA [Brucella abortus
           bv. 5 str. B3196]
 gi|189018841|gb|ACD71563.1| chromosomal replication initiation protein [Brucella abortus S19]
 gi|225639912|gb|ACN99825.1| chromosomal replication initiator protein DnaA [Brucella melitensis
           ATCC 23457]
 gi|297174578|gb|EFH33925.1| chromosomal replication initiator protein DnaA [Brucella abortus
           bv. 5 str. B3196]
          Length = 546

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 201 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405


>gi|325267547|ref|ZP_08134199.1| DNA-directed DNA replication initiator protein DnaA [Kingella
           denitrificans ATCC 33394]
 gi|324980897|gb|EGC16557.1| DNA-directed DNA replication initiator protein DnaA [Kingella
           denitrificans ATCC 33394]
          Length = 559

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 28/232 (12%)

Query: 38  ISRDDLLVHSAIEQ----AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
            + D L+V    +     A+ + ++          + G +G GK+ L     ++  +   
Sbjct: 226 YTFDTLVVGKGNQLPVQVAMSIAENPGDNMYNPFFVYGSTGLGKTHLVQAVGNRLLALNP 285

Query: 94  SNIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQLFHIINSI 133
           +   + + S                            ++++DI  +   D  +       
Sbjct: 286 AAKVRYMHSNEYLKTFMTTVKNKSWDAFKQQYLHYDLLIIDDIQFIQGKDRTMEEFFFLF 345

Query: 134 H---QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
                 +  +++T    P         L SR      V+I  P+ +    ++        
Sbjct: 346 EHFHSRNQQIILTCDQLPSGLEHMEKRLISRFSWGMTVRIEPPELEMRIDILEHKAKKMD 405

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALSRGMGITRSLAAEVLKE 241
           I  D+  A +I Q ++ S+   E  +++ +      +   I   LA   L++
Sbjct: 406 IQFDEGAALFIAQNVKASVRELEGALNRVIARCRFEKRNVIDIDLATSALQD 457


>gi|32471553|ref|NP_864546.1| chromosomal replication initiator protein dnaA [Rhodopirellula
           baltica SH 1]
 gi|32443394|emb|CAD72227.1| chromosomal replication initiator protein dnaA [Rhodopirellula
           baltica SH 1]
          Length = 591

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 69/203 (33%), Gaps = 33/203 (16%)

Query: 19  DQPKNKEEQLFFSFP-RCLGISR--DDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGP 72
             P++ + +L    P       R  D  +     E A     +  + PS  +  + L GP
Sbjct: 229 STPRSSKSKLP-PLPESQPTGGRTLDSFITGPCNEFAFSAAMMAVATPSVATP-LFLHGP 286

Query: 73  SGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTRK--------------PVL 112
           +G+GKS L    +++       R        +  +  ++                   +L
Sbjct: 287 TGTGKSHLLAALANEFRTRRRMRRVVLLTAEQFTNDFVVSVGSTGLPAFRRRYRDVDALL 346

Query: 113 LEDIDLLDFN----DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           ++D+  L          L+ +          L+ +A   P        ++  R+ +  V 
Sbjct: 347 IDDVHFLAAKTATLREALYTVETLA-SAGKPLVFSANLPPSDIRGLTGEVAGRMASGLVC 405

Query: 169 KISLPDDDFLEKVIVKMFADRQI 191
            ++  D +   K++ +M A R +
Sbjct: 406 PLAALDQETRFKLLQRMVATRCV 428


>gi|161617992|ref|YP_001591879.1| chromosomal replication initiation protein [Brucella canis ATCC
           23365]
 gi|161334803|gb|ABX61108.1| chromosomal replication initiator protein DnaA [Brucella canis ATCC
           23365]
          Length = 546

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 201 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405


>gi|254690318|ref|ZP_05153572.1| chromosomal replication initiation protein [Brucella abortus bv. 6
           str. 870]
 gi|254696435|ref|ZP_05158263.1| chromosomal replication initiation protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700819|ref|ZP_05162647.1| chromosomal replication initiation protein [Brucella suis bv. 5
           str. 513]
 gi|254707298|ref|ZP_05169126.1| chromosomal replication initiation protein [Brucella pinnipedialis
           M163/99/10]
 gi|254709163|ref|ZP_05170974.1| chromosomal replication initiation protein [Brucella pinnipedialis
           B2/94]
 gi|256030687|ref|ZP_05444301.1| chromosomal replication initiation protein [Brucella pinnipedialis
           M292/94/1]
 gi|256045791|ref|ZP_05448669.1| chromosomal replication initiation protein [Brucella melitensis bv.
           1 str. Rev.1]
 gi|256060146|ref|ZP_05450328.1| chromosomal replication initiation protein [Brucella neotomae 5K33]
 gi|256112510|ref|ZP_05453431.1| chromosomal replication initiation protein [Brucella melitensis bv.
           3 str. Ether]
 gi|256258572|ref|ZP_05464108.1| chromosomal replication initiation protein [Brucella abortus bv. 9
           str. C68]
          Length = 540

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399


>gi|15964121|ref|NP_384474.1| chromosomal replication initiation protein [Sinorhizobium meliloti
           1021]
 gi|307301266|ref|ZP_07581028.1| chromosomal replication initiator protein DnaA [Sinorhizobium
           meliloti BL225C]
 gi|307317937|ref|ZP_07597374.1| chromosomal replication initiator protein DnaA [Sinorhizobium
           meliloti AK83]
 gi|15073297|emb|CAC41805.1| Chromosomal replication initiator [Sinorhizobium meliloti 1021]
 gi|306896339|gb|EFN27088.1| chromosomal replication initiator protein DnaA [Sinorhizobium
           meliloti AK83]
 gi|306903722|gb|EFN34309.1| chromosomal replication initiator protein DnaA [Sinorhizobium
           meliloti BL225C]
          Length = 507

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P       D  +  S+   A+     I    +   R   + +    G GK+ L    +  
Sbjct: 165 PLDQRYGFDSFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSVGLGKTHLLQAIALA 224

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +  +  +     L +     R    + D            IDLL  +D Q          
Sbjct: 225 ALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDLLIIDDMQFLQGKSIQHE 284

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P         + SRL+    +++  PD +   +++ + 
Sbjct: 285 FCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEMEGPDYEMRLEMLKRR 344

Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211
             A RQ     ++   I+  + R++  
Sbjct: 345 LEAARQDDASLEIPLEILSHVARNVTA 371


>gi|327537593|gb|EGF24307.1| chromosomal replication initiator protein dnaA [Rhodopirellula
           baltica WH47]
          Length = 578

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 69/203 (33%), Gaps = 33/203 (16%)

Query: 19  DQPKNKEEQLFFSFP-RCLGISR--DDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGP 72
             P++ + +L    P       R  D  +     E A     +  + PS  +  + L GP
Sbjct: 216 STPRSSKSKLP-PLPESQPTGGRTLDSFITGPCNEFAFSAAMMAVATPSVATP-LFLHGP 273

Query: 73  SGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTRK--------------PVL 112
           +G+GKS L    +++       R        +  +  ++                   +L
Sbjct: 274 TGTGKSHLLAALANEFRTRRRMRRVVLLTAEQFTNDFVVSVGSTGLPAFRRRYRDVDALL 333

Query: 113 LEDIDLLDFN----DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           ++D+  L          L+ +          L+ +A   P        ++  R+ +  V 
Sbjct: 334 IDDVHFLAAKTATLREALYTVETLA-SAGKPLVFSANLPPSDIRGLTGEVAGRMASGLVC 392

Query: 169 KISLPDDDFLEKVIVKMFADRQI 191
            ++  D +   K++ +M A R +
Sbjct: 393 PLAALDQETRFKLLQRMVATRCV 415


>gi|239830847|ref|ZP_04679176.1| chromosomal replication initiator protein DnaA [Ochrobactrum
           intermedium LMG 3301]
 gi|239823114|gb|EEQ94682.1| chromosomal replication initiator protein DnaA [Ochrobactrum
           intermedium LMG 3301]
          Length = 534

 Score = 62.9 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 78/220 (35%), Gaps = 34/220 (15%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 189 PLDPRYTFDSFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 248

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 249 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 307

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 308 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRVEMLRR 367

Query: 185 MFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             A  Q     + I +++ +++ + +  S    E   +++
Sbjct: 368 RLAAAQAEDPSLTIGEEILSHVARTVTGSGRELEGAFNQL 407


>gi|163842278|ref|YP_001626682.1| chromosomal replication initiation protein [Brucella suis ATCC
           23445]
 gi|163673001|gb|ABY37112.1| chromosomal replication initiator protein DnaA [Brucella suis ATCC
           23445]
          Length = 546

 Score = 62.9 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 201 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405


>gi|254705186|ref|ZP_05167014.1| chromosomal replication initiation protein [Brucella suis bv. 3
           str. 686]
          Length = 540

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399


>gi|86169599|gb|ABC87039.1| chromosomal replication initiation protein [Leuconostoc fallax KCTC
           3537]
          Length = 219

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           T   +L++DI  L   D    + F+  N++ +    ++MT+   P +       L +R +
Sbjct: 31  TVDLLLIDDIQFLSGKDKIQEEFFNTFNALTKTGRQIVMTSDQLPKNIPDLQQRLTTRFE 90

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMD 220
           A   + I  PD      ++        + I + +   I ++++   RSL  A    +   
Sbjct: 91  AGISMDILQPDLPTRVAILQNKAETDGLNIPRDVLELIAEKVDNNVRSLEGAFHKFEATL 150

Query: 221 NLALSRGMGITRSLAAEVLKET 242
                     T+  A ++L + 
Sbjct: 151 RF---MNKPATKETAQQILGDL 169


>gi|4378841|gb|AAD19709.1| DnaA [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 285

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 12  VPDKQKNDQPKNKEE---QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSR 65
           VP   K+  P+ K E   Q  F        + D+ +V  A + A R   ++         
Sbjct: 127 VPATPKSTSPEKKAEGEDQNQFE----ERYNFDNFVVGKANDLAYRAACTFAEGGKLDFN 182

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILI 105
            + L G +G GK+ L +    +      ++ A  + +                      +
Sbjct: 183 PLFLYGGTGLGKTHLMHAVGIEYLKRHPNSTALYMSAEKFMYDFVASMRAKDTHSFKARL 242

Query: 106 DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145
            +   ++++D+  +   D    + FH +N +      L+++A 
Sbjct: 243 RSADLLMIDDVQFIAGKDSTQEEFFHTMNEVITAGRRLVISAD 285


>gi|17988226|ref|NP_540860.1| chromosomal replication initiation protein [Brucella melitensis bv.
           1 str. 16M]
 gi|260546286|ref|ZP_05822026.1| chromosomal replication initiation protein [Brucella abortus NCTC
           8038]
 gi|265999709|ref|ZP_05467476.2| chromosomal replication initiation protein [Brucella melitensis bv.
           2 str. 63/9]
 gi|17983991|gb|AAL53124.1| chromosomal replication initiator protein dnaa [Brucella melitensis
           bv. 1 str. 16M]
 gi|260096393|gb|EEW80269.1| chromosomal replication initiation protein [Brucella abortus NCTC
           8038]
 gi|263095429|gb|EEZ19030.1| chromosomal replication initiation protein [Brucella melitensis bv.
           2 str. 63/9]
 gi|326408012|gb|ADZ65077.1| chromosomal replication initiation protein [Brucella melitensis
           M28]
 gi|326537730|gb|ADZ85945.1| chromosomal replication initiator protein DnaA [Brucella melitensis
           M5-90]
          Length = 527

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 182 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 241

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 242 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 300

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 301 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 360

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 361 RLASAQCEDASLDIGEEILAHVARTV 386


>gi|260563084|ref|ZP_05833570.1| chromosomal replication initiation protein [Brucella melitensis bv.
           1 str. 16M]
 gi|260153100|gb|EEW88192.1| chromosomal replication initiation protein [Brucella melitensis bv.
           1 str. 16M]
          Length = 529

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 184 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 243

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 244 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 302

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 303 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 362

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 363 RLASAQCEDASLDIGEEILAHVARTV 388


>gi|15678268|ref|NP_275383.1| replication factor C large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|42559321|sp|O26342|RFCL_METTH RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit;
           AltName: Full=mthRFC large subunit
 gi|2621289|gb|AAB84746.1| replication factor C, large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 479

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 37/196 (18%)

Query: 54  RLIDSWPSW-PSRVVILVGPSGSGKSCLANIWSDK-SRSTRFSNIAKSLDSILIDTRK-- 109
             I +W +  P + ++LVGP G+GK+ LA+I   + S +   +   +     L+ +    
Sbjct: 27  EWIKAWKAGKPQKPLLLVGPPGTGKTTLAHIIGKEFSDTLELNASDRRSQDALMRSAGEA 86

Query: 110 ------------PVLLEDIDLLDFND-TQLFHIINS-IHQYDSSLLMTARTFPVSWGVCL 155
                        ++L+++D +  N+       IN  I +    +++TA           
Sbjct: 87  SATRSLFNHDLKLIILDEVDGIHGNEDRGGVQAINRIIKESRHPMVLTANDPYSK----- 141

Query: 156 PDLCSRLKA----ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
                RL++      V+ +       +   + ++     I     +   + +   RS   
Sbjct: 142 -----RLQSIKPRCRVLNLRKVHTSSIAAALRRICRAEGIECPDDVLRELAK---RSRGD 193

Query: 212 AEKLVDKMDNLALSRG 227
               ++  D  A++ G
Sbjct: 194 LRSAIN--DLEAMAEG 207


>gi|2909713|gb|AAC12963.1| DnaA [Lactococcus lactis subsp. cremoris MG1363]
          Length = 272

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 53/123 (43%), Gaps = 1/123 (0%)

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            + F+  N+++   S +++T+   P         L SR        I+ PD +    +++
Sbjct: 51  NEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMAILL 110

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242
                  +    +  +YI  +++ ++   E  +++++ +A + G+ I     A++ L+  
Sbjct: 111 IKSESSHLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGISIVDIETASQALRSL 170

Query: 243 QQC 245
           +  
Sbjct: 171 KNA 173


>gi|317122073|ref|YP_004102076.1| recombination protein MgsA [Thermaerobacter marianensis DSM 12885]
 gi|315592053|gb|ADU51349.1| Recombination protein MgsA [Thermaerobacter marianensis DSM 12885]
          Length = 500

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 81/202 (40%), Gaps = 33/202 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +IL GP GSGK+ LA I +  +R+        +     L  ++ + ++   LE    +
Sbjct: 68  GSIILWGPPGSGKTTLARIIARTTRAHFEPLNAVTAGVADLRRVVEEAKERRALEGRSTV 127

Query: 120 DFNDTQLFHIINSIHQYD-------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            F D    H  N   Q           + +   T    +  C+P L SR   A + ++  
Sbjct: 128 LFVDEV--HRWNRAQQDALLPHLESGLVALIGATTENPYFACVPPLVSR---ARIFRLEP 182

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             D+ + +++++  AD  R +      ++ +   ++V+        A   ++ ++   L+
Sbjct: 183 LSDEDVRRLLLRALADPERGLGNYRVEVEPEALDHLVRVAG---GDARSALNALELAVLT 239

Query: 226 RG------MGITRSLAAEVLKE 241
                     IT ++A E +++
Sbjct: 240 TPPGEDGVRRITLAVAEESIQK 261


>gi|438884|gb|AAA26258.1| dnaA [Sinorhizobium meliloti]
 gi|755069|gb|AAA91097.1| dnaA [Sinorhizobium meliloti]
          Length = 507

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P       D  +  S+   A+     I    +   R   + +    G GK+ L    +  
Sbjct: 165 PLDQRYGFDSFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSVGLGKTHLLQAIALA 224

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +  +  +     L +     R    + D            IDLL  +D Q          
Sbjct: 225 ALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDLLIIDDMQFLQGKSIQHE 284

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P         + SRL+    +++  PD +   +++ + 
Sbjct: 285 FCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEMEGPDYEMRLEMLKRR 344

Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211
             A RQ     ++   I+  + R++  
Sbjct: 345 LEAARQDDASLEIPLEILSHVARNVTA 371


>gi|260567348|ref|ZP_05837818.1| chromosomal replication initiation protein [Brucella suis bv. 4
           str. 40]
 gi|260156866|gb|EEW91946.1| chromosomal replication initiation protein [Brucella suis bv. 4
           str. 40]
          Length = 527

 Score = 62.9 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 182 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 241

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 242 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 300

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 301 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 360

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 361 RLASAQCEDASLDIGEEILAHVARTV 386


>gi|14195656|sp|P35890|DNAA_RHIME RecName: Full=Chromosomal replication initiator protein DnaA
          Length = 480

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 28/207 (13%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87
           P       D  +  S+   A+     I    +   R   + +    G GK+ L    +  
Sbjct: 138 PLDQRYGFDSFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSVGLGKTHLLQAIALA 197

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127
           +  +  +     L +     R    + D            IDLL  +D Q          
Sbjct: 198 ALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDLLIIDDMQFLQGKSIQHE 257

Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H++N +      +++ A   P         + SRL+    +++  PD +   +++ + 
Sbjct: 258 FCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEMEGPDYEMRLEMLKRR 317

Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211
             A RQ     ++   I+  + R++  
Sbjct: 318 LEAARQDDASLEIPLEILSHVARNVTA 344


>gi|86169589|gb|ABC87034.1| chromosomal replication initiation protein [Leuconostoc
           mesenteroides subsp. cremoris]
          Length = 246

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 11/143 (7%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   +L++DI      +    + F+  N + +    ++MT+   P         L SR +
Sbjct: 48  SVDLLLVDDIQFWSGKEKVQEEFFNTFNVLTKNGKQIVMTSDKLPTEIVDLQTRLTSRFE 107

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMD 220
           A  ++ I  PD      ++  +     + I   +   I ++++   RSL  A    +   
Sbjct: 108 AGIMMDIQKPDLPTRVAILQNLSESDGLDIPNDVLELIAEKIDSNVRSLEGAFHKFE--- 164

Query: 221 NLALS-RGMGITRSLAAEVLKET 242
             +L       T+  A ++L + 
Sbjct: 165 -ASLRYMNKPATKETAQQILGDL 186


>gi|224368958|ref|YP_002603122.1| DnaA [Desulfobacterium autotrophicum HRM2]
 gi|223691675|gb|ACN14958.1| DnaA [Desulfobacterium autotrophicum HRM2]
          Length = 469

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 85/261 (32%), Gaps = 36/261 (13%)

Query: 20  QPKNKEEQLFFS-FPRCLGISR--------DDLLVHSAIEQAV-RLIDSWPSWP--SRVV 67
           +  ++  Q+            R        D  +V    + A    +    +    +  +
Sbjct: 108 RRPSRPMQMALPGLNIRSDSGRMLKKGYTFDRFVVGDNSDFAYSAALSLAQTSSVNNGAI 167

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSN-----IAKSLDSILIDTRK------------- 109
            L+  +G GKS L+        S  FS+      A+   + ++ + K             
Sbjct: 168 YLLSDTGLGKSHLSQAVGHHVISQGFSDKVYYVTAEDFTNEMVSSIKNNTINGFKEKYRR 227

Query: 110 ---PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
               ++LED+  L   D    +L   ++ +   +  ++ +    P         L SRL 
Sbjct: 228 KCDVLILEDVHFLSGKDATQKELAMTLDYLMDAEKKIIFSGCYLPDDIPKMNEQLKSRLT 287

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              V KI  P+     K++          I   +  Y+ Q +  ++   E  +  +   +
Sbjct: 288 LGMVTKIDPPNFKTRVKILKNKSKYDGFVIPNDVTEYLAQELCDNVRQLESGLMGVARKS 347

Query: 224 LSRGMGITRSLAAEVLKETQQ 244
              G  I  +LA  VL    +
Sbjct: 348 ALLGEKIDINLARGVLSTISR 368


>gi|86169587|gb|ABC87033.1| chromosomal replication initiation protein [Leuconostoc
           mesenteroides subsp. dextranicum]
          Length = 237

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 11/143 (7%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   +L++DI      +    + F+  N + +    ++MT+   P         L SR +
Sbjct: 42  SVDLLLVDDIQFWSGKEKVQEEFFNTFNVLTKNGKQIVMTSDKLPTEIVDLQTRLTSRFE 101

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMD 220
           A  ++ I  PD      ++  +     + I   +   I ++++   RSL  A    +   
Sbjct: 102 AGIMMDIQKPDLPTRVAILQNLSESDGLDIPNDVLELIAEKIDSNVRSLEGAFHKFE--- 158

Query: 221 NLALS-RGMGITRSLAAEVLKET 242
             +L       T+  A ++L + 
Sbjct: 159 -ASLRYMNKPATKETAQQILGDL 180


>gi|86169591|gb|ABC87035.1| chromosomal replication initiation protein [Leuconostoc citreum]
          Length = 225

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           T   +L++DI      +    + F+  N + +    ++MT+   P        DL SRL 
Sbjct: 36  TVDLLLIDDIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLT 91

Query: 164 ----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               A   + I  PD      ++  +     + I   +   I  +++ ++   E    + 
Sbjct: 92  SRFEAGISMDIQKPDLPTRVAILKNLAETDGLTIPNDVLELIADKIDSNIRTLEGTFHRF 151

Query: 220 DNLALSRGMGITRSLAAEVLKET 242
           + +   R    T+  A ++L + 
Sbjct: 152 EAMLRFRNKPATKETAQQILGDL 174


>gi|86169605|gb|ABC87042.1| chromosomal replication initiation protein [Fructobacillus
           pseudoficulneus]
          Length = 227

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI      +    + F+  N++ +    ++MT+  +P      L  L SR +A   
Sbjct: 44  LLIDDIQFWSGKEKVQEEFFNTFNALTKSGKQIVMTSDRYPTDIPDLLTRLTSRFEAGIT 103

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLAL 224
             I  PD      ++  +     + I  ++   I ++++   RSL  A    +       
Sbjct: 104 QDIQKPDLPTRVAILRNLQERNDLDIPNEVLELIGEKIDTNVRSLEGAFHKFEAKIRF-- 161

Query: 225 SRGMGITRSLAAEVLKET 242
                 T   A  +L E 
Sbjct: 162 -MNKPATIETAQSILAEL 178


>gi|307709854|ref|ZP_07646303.1| chromosomal replication initiator protein dnaA [Streptococcus mitis
           SK564]
 gi|307619403|gb|EFN98530.1| chromosomal replication initiator protein dnaA [Streptococcus mitis
           SK564]
          Length = 166

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 21/161 (13%)

Query: 35  CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88
                 ++ +       A    + ++ +          + G SGSGK+ L     +K   
Sbjct: 7   DNKYQFENFVEKDGNALAKKEALEVVKNLGL-KYSPFYIYGESGSGKTHLLLAIGNKVLE 65

Query: 89  ----------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND----TQLFHIINSIH 134
                      +         +  +  +    +L++DI +L+  D     + F++ NS  
Sbjct: 66  NNPEKRVKYISAENLLENELEIQKVRGEELDLLLVDDIQVLEEKDDMIQEKFFNLFNSFF 125

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
              + ++++  + P         L  R K      ++  +D
Sbjct: 126 GRKTQIVLSGNSEPDQLKNVQSRLIVRFKWGMTACLTSLED 166


>gi|86169597|gb|ABC87038.1| chromosomal replication initiation protein [Leuconostoc
           pseudomesenteroides KCTC 3652]
          Length = 233

 Score = 62.5 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 11/143 (7%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   +L++DI      +    + F+  N + +    + MT+  +P         L SR +
Sbjct: 44  SVDLLLVDDIQFWSGKEKVQEEFFNTFNVLTKNGKQIFMTSDKYPTEIVDLQTRLTSRFE 103

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMD 220
           A  ++ I  PD      ++  +     + I   +   I ++++   RSL  A    +   
Sbjct: 104 AGIMMDIQKPDLPTRVAILQNLSESDGLTIPNDVLELIAEKIDSNVRSLEGAFHKFE--- 160

Query: 221 NLALS-RGMGITRSLAAEVLKET 242
             +L       T+  A ++L + 
Sbjct: 161 -ASLGYMNKPATKETAQQILGDL 182


>gi|167946699|ref|ZP_02533773.1| DNA replication initiation factor [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 60

 Score = 62.5 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 29/55 (52%)

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            A R + +  ++A +++QR+ R      + ++++D  +L+    +T     E+LK
Sbjct: 5   AAKRGLDLKPEIAQFLLQRIPRDTRSILQRLEQLDQASLAAQRRLTIPFVREILK 59


>gi|260222992|emb|CBA33111.1| hypothetical protein Csp_B17410 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 63

 Score = 62.1 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           R +F+  ++  +++ R  R L    +L+D MD  AL     IT  L   +L+ T
Sbjct: 10  RGVFLGDEVMDFMLNRFSRDLGSLMELLDLMDGYALQTQRAITIPLIKSMLENT 63


>gi|265983181|ref|ZP_06095916.1| chromosomal replication initiator protein dnaA [Brucella sp. 83/13]
 gi|264661773|gb|EEZ32034.1| chromosomal replication initiator protein dnaA [Brucella sp. 83/13]
          Length = 494

 Score = 62.1 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 149 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 209 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 267

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 268 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 327

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 328 RLASAQCEDASLDIGEEILAHVARTV 353


>gi|62288992|ref|YP_220785.1| chromosomal replication initiation protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82698933|ref|YP_413507.1| chromosomal replication initiation protein [Brucella melitensis
           biovar Abortus 2308]
 gi|148559145|ref|YP_001258050.1| chromosomal replication initiation protein [Brucella ovis ATCC
           25840]
 gi|256368466|ref|YP_003105972.1| chromosomal replication initiation protein [Brucella microti CCM
           4915]
 gi|261316660|ref|ZP_05955857.1| chromosomal replication initiator protein dnaA [Brucella
           pinnipedialis B2/94]
 gi|261324123|ref|ZP_05963320.1| chromosomal replication initiator protein dnaA [Brucella neotomae
           5K33]
 gi|261751325|ref|ZP_05995034.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 5
           str. 513]
 gi|265987732|ref|ZP_06100289.1| chromosomal replication initiator protein dnaA [Brucella
           pinnipedialis M292/94/1]
 gi|265992206|ref|ZP_06104763.1| chromosomal replication initiator protein dnaA [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265993946|ref|ZP_06106503.1| chromosomal replication initiator protein dnaA [Brucella melitensis
           bv. 3 str. Ether]
 gi|38257710|sp|Q8YED5|DNAA_BRUME RecName: Full=Chromosomal replication initiator protein DnaA
 gi|71151794|sp|Q57G10|DNAA_BRUAB RecName: Full=Chromosomal replication initiator protein DnaA
 gi|62195124|gb|AAX73424.1| DnaA, chromosomal replication initiator protein [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615034|emb|CAJ09955.1| ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal
           replication initiator protein, DnaA:AAA ATPase:Neutral
           zinc metal [Brucella melitensis biovar Abortus 2308]
 gi|148370402|gb|ABQ60381.1| chromosomal replication initiator protein DnaA [Brucella ovis ATCC
           25840]
 gi|255998624|gb|ACU47023.1| chromosomal replication initiation protein [Brucella microti CCM
           4915]
 gi|261295883|gb|EEX99379.1| chromosomal replication initiator protein dnaA [Brucella
           pinnipedialis B2/94]
 gi|261300103|gb|EEY03600.1| chromosomal replication initiator protein dnaA [Brucella neotomae
           5K33]
 gi|261741078|gb|EEY29004.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 5
           str. 513]
 gi|262764927|gb|EEZ10848.1| chromosomal replication initiator protein dnaA [Brucella melitensis
           bv. 3 str. Ether]
 gi|263003272|gb|EEZ15565.1| chromosomal replication initiator protein dnaA [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|264659929|gb|EEZ30190.1| chromosomal replication initiator protein dnaA [Brucella
           pinnipedialis M292/94/1]
          Length = 496

 Score = 62.1 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 151 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 210

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 211 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 269

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 270 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 329

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 330 RLASAQCEDASLDIGEEILAHVARTV 355


>gi|260759080|ref|ZP_05871428.1| chromosomal replication initiator protein dnaA [Brucella abortus
           bv. 4 str. 292]
 gi|260669398|gb|EEX56338.1| chromosomal replication initiator protein dnaA [Brucella abortus
           bv. 4 str. 292]
          Length = 494

 Score = 62.1 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 149 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 209 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 267

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 268 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 327

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 328 RLASAQCEDASLDIGEEILAHVARTV 353


>gi|86169593|gb|ABC87036.1| chromosomal replication initiation protein [Leuconostoc citreum]
          Length = 219

 Score = 62.1 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           T   +L++DI      +    + F+  N + +    ++MT+   P        DL SRL 
Sbjct: 30  TVDLLLIDDIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLT 85

Query: 164 ----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               A   + I  PD      ++  +     + I   +   I  +++ ++   E    + 
Sbjct: 86  SRFEAGISMDIQKPDLPTRVAILKNLAETDGLTIPNDVLELIADKIDSNIRTLEGTFHRF 145

Query: 220 DNLALSRGMGITRSLAAEVLKET 242
           + +   R    T+  A ++L + 
Sbjct: 146 EAMLRFRNKPATKETAQQILGDL 168


>gi|91200409|emb|CAJ73456.1| similar to ATPase related to the helicase subunit of the Holliday
           junction resolvase [Candidatus Kuenenia stuttgartiensis]
          Length = 478

 Score = 62.1 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 37/202 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
           +I  GP G GK+ LA I ++   +   +  A       +   + V+ E  + L FN   T
Sbjct: 88  LIFWGPPGVGKTTLALIIANAMNAHFITFSAVLSG---VKEIRAVIEEAKEQLKFNGKRT 144

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ V  P L SR     V+ +  
Sbjct: 145 VLFVDEIHRFNKAQQDSFLHHVEDGTITLIGATTENPSFEVNSP-LLSR---CKVLVLEP 200

Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
                +  +++   +DR       +I I + +  +I    E S   A   ++ ++   + 
Sbjct: 201 LRKSHITAILLNALSDRESGLGGQKIEIPQDVIDFIA---EFSHGEARAALNTLETAIML 257

Query: 226 RG------MGITRSLAAEVLKE 241
                     +T  +A E ++ 
Sbjct: 258 VRPNEKDIRPVTMEIAMEAMQR 279


>gi|260755857|ref|ZP_05868205.1| chromosomal replication initiator protein dnaA [Brucella abortus
           bv. 6 str. 870]
 gi|260760806|ref|ZP_05873149.1| chromosomal replication initiator protein dnaA [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260884882|ref|ZP_05896496.1| chromosomal replication initiator protein dnaA [Brucella abortus
           bv. 9 str. C68]
 gi|261314779|ref|ZP_05953976.1| chromosomal replication initiator protein dnaA [Brucella
           pinnipedialis M163/99/10]
 gi|260671238|gb|EEX58059.1| chromosomal replication initiator protein dnaA [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260675965|gb|EEX62786.1| chromosomal replication initiator protein dnaA [Brucella abortus
           bv. 6 str. 870]
 gi|260874410|gb|EEX81479.1| chromosomal replication initiator protein dnaA [Brucella abortus
           bv. 9 str. C68]
 gi|261303805|gb|EEY07302.1| chromosomal replication initiator protein dnaA [Brucella
           pinnipedialis M163/99/10]
          Length = 494

 Score = 62.1 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 149 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 209 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 267

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 268 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 327

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 328 RLASAQCEDASLDIGEEILAHVARTV 353


>gi|259235525|gb|ACW20309.1| replication initiator DnaA [Francisella cf. novicida 3523]
          Length = 191

 Score = 62.1 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 26/137 (18%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 55  EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 114

Query: 83  IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122
              + +R    +      +S                     +  +   +L++DI  +   
Sbjct: 115 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 174

Query: 123 D---TQLFHIINSIHQY 136
           +    + FH  N++++ 
Sbjct: 175 EGTAQEFFHTFNALYEN 191


>gi|23500917|ref|NP_697044.1| chromosomal replication initiation protein [Brucella suis 1330]
 gi|261755890|ref|ZP_05999599.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 3
           str. 686]
 gi|38257642|sp|Q8G3E7|DNAA_BRUSU RecName: Full=Chromosomal replication initiator protein DnaA
 gi|23346770|gb|AAN28959.1| chromosomal replication initiator protein DnaA [Brucella suis 1330]
 gi|261745643|gb|EEY33569.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 3
           str. 686]
          Length = 496

 Score = 62.1 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 151 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 210

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 211 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 269

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 270 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 329

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 330 RLASAQCEDASLDIGEEILAHVARTV 355


>gi|13357559|ref|NP_077831.1| chromosomal replication initiator protein [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|170762315|ref|YP_001752081.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|171920143|ref|ZP_02690831.2| chromosomal replication initiator protein DnaA [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|183508477|ref|ZP_02689676.2| chromosomal replication initiator protein DnaA [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|186701846|ref|ZP_02553448.2| chromosomal replication initiator protein DnaA [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
 gi|12230044|sp|Q9PRE2|DNAA_UREPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|189083284|sp|B1AHY7|DNAA_UREP2 RecName: Full=Chromosomal replication initiator protein DnaA
 gi|11356754|pir||B82945 chromosomal replication initiator protein UU001 [imported] -
           Ureaplasma urealyticum
 gi|6898947|gb|AAF30408.1|AE002100_1 chromosomal replication initiator protein [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827892|gb|ACA33154.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|171902510|gb|EDT48799.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|182675896|gb|EDT87801.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|186701140|gb|EDU19422.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
          Length = 457

 Score = 62.1 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 32/198 (16%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSDKSR- 89
             + ++L++ +  ++A++ I++  S           + L G  G GK+ +     ++   
Sbjct: 113 RYNFNNLVISNFNQKAIKAIENLFSNNYDNSSMCNPLFLFGKVGVGKTHIVAAAGNRFAN 172

Query: 90  ---------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQ 125
                                ++             I +   ++ EDI  +   D     
Sbjct: 173 SNPNLKIYYYEGQDFFRKFCSASLKGTSYVEEFKKEIASADLLIFEDIQNIQSRDSTAEL 232

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
            F+I N I      +++T+   P         + SRL +    KIS PD +   K+I   
Sbjct: 233 FFNIFNDIKLNGGKIILTSDRTPNELNGFHNRIISRLASGLQCKISQPDKNEAIKIINNW 292

Query: 186 FA-DRQIFIDKKLAAYIV 202
           F   ++  I  +   YI 
Sbjct: 293 FEFKKKYQITDEAKEYIA 310


>gi|240047136|ref|YP_002960524.1| chromosomal replication initiation protein [Mycoplasma conjunctivae
           HRC/581]
 gi|239984708|emb|CAT04680.1| Chromosomal replication initiator protein dnaA [Mycoplasma
           conjunctivae]
          Length = 470

 Score = 62.1 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 28/181 (15%)

Query: 67  VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSIL------------------ 104
           + + G SG GK+   +     +  K +   + N  K    +                   
Sbjct: 156 LFIYGASGVGKTHFLSALGNSFIKKDKKVFYINDYKFTSIVTSWLRDKNEYSKINQFIEW 215

Query: 105 IDTRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
           + T   ++++DI         L   F IIN   + D  +++ + T P   G     L +R
Sbjct: 216 LSTIDVLIIDDIQGFGNKTRTLSILFQIINKFIEEDKQIVIASDTPPNILGGFEDRLITR 275

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDK 218
            K+  V++++ P  +   K+      +  +       +   ++ +    S+   E  + K
Sbjct: 276 FKSGLVIEMNKPTKEDFVKIFKFKIEEEGLDKYYWSPEAIDFLSRHFHNSIRDMEGALKK 335

Query: 219 M 219
           +
Sbjct: 336 I 336


>gi|12045329|ref|NP_073140.1| chromosomal replication initiation protein [Mycoplasma genitalium
           G37]
 gi|1352276|sp|P35888|DNAA_MYCGE RecName: Full=Chromosomal replication initiator protein DnaA
 gi|3845066|gb|AAC72490.1| chromosomal replication initiator protein DnaA [Mycoplasma
           genitalium G37]
 gi|166079050|gb|ABY79668.1| chromosomal replication initiator protein DnaA [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 437

 Score = 62.1 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 32/199 (16%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---ID 57
           +N + E   FF    +  +  ++   Q   +       +  + ++    ++A      + 
Sbjct: 72  VNFVNEQ-DFFFNLAKLEENSRDTLYQ---NSGLSKNYTFQNFVISEGNKRAYEAGVRLA 127

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWS---------DKSRSTRFSNIAKSLDSILIDTR 108
                    + + G +G GK+ L               + +    S+ A+ +        
Sbjct: 128 ETQDNEFSPLFIYGETGLGKTHLLQAIGNEKFRNFPNARVKYVVSSDFAQEVVDAFYQRD 187

Query: 109 KPVL-----LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWG 152
           K +       E++DL+  +DTQ           LF+I N++      +++ +   P    
Sbjct: 188 KGIEKLKKNYENLDLVLIDDTQIFGRKEKTLEILFNIFNNLVLNKKQIVLVSDKAPDELI 247

Query: 153 VCLPDLCSRLKAATVVKIS 171
                + SR K+  ++KI 
Sbjct: 248 DIDARMISRFKSGLLLKIE 266


>gi|218506736|ref|ZP_03504614.1| chromosomal replication initiation protein [Rhizobium etli Brasil
           5]
          Length = 276

 Score = 62.1 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 90  STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DTQLFHIINSIHQYDSSLLMTARTF 147
           +T   +         +     ++++D+  L       +  H++N +      +++ A   
Sbjct: 6   ATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRA 65

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
           P       P + SRL+    +++  PD +  LE +  ++ A RQ     ++ A ++Q + 
Sbjct: 66  PWELESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRRLAAARQEDPSLEIPADLLQHVA 125

Query: 207 RSLVF 211
           R++  
Sbjct: 126 RNITA 130


>gi|307941558|ref|ZP_07656913.1| chromosomal replication initiator protein DnaA [Roseibium sp.
           TrichSKD4]
 gi|307775166|gb|EFO34372.1| chromosomal replication initiator protein DnaA [Roseibium sp.
           TrichSKD4]
          Length = 487

 Score = 61.7 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 80/250 (32%), Gaps = 32/250 (12%)

Query: 28  LFFSF----PRCLGISRDDLLVHSAIEQAVRLID---SWPSWPSRVVILVGPSGSGKSCL 80
           L   F          + D  +  ++   A   +    +  S    ++ +    G GKS L
Sbjct: 139 LPLQFLQGAAVNPNQTFDTFVEGNSNGLAFSAVRQMANDQSSTLDLLFIHSGIGIGKSHL 198

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPV----------LLEDIDLLDF--------- 121
            +  + ++R+     +  + +  +      +           L+ +DLL           
Sbjct: 199 LHAAAAEARAAGRKVLYVTAEYFMYHLVPALRTRSFTMVKQTLDSVDLLLIDDIQLLHGK 258

Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
            +  +    +  + +    +++ A   P         L  R     V  I  PD    + 
Sbjct: 259 QHQQEFCQTLRMLLESPKQVIVAADRPPEQLATLDDTLRKRFADGVVAGIQHPDYLLRKN 318

Query: 181 VIVKM--FADR---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           ++ K    A R      I + +  +I + +  S    E  V+++          IT+ LA
Sbjct: 319 IVEKRVSIARRHYPSFDIPEAVVDHIARNVTSSARDLEGAVNRLIAHNQLTNQPITQELA 378

Query: 236 AEVLKETQQC 245
            + L +  + 
Sbjct: 379 DKTLHDLVKP 388


>gi|269122801|ref|YP_003305378.1| Chromosomal replication initiator DnaA [Streptobacillus
           moniliformis DSM 12112]
 gi|268314127|gb|ACZ00501.1| Chromosomal replication initiator DnaA [Streptobacillus
           moniliformis DSM 12112]
          Length = 441

 Score = 61.7 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 90/237 (37%), Gaps = 34/237 (14%)

Query: 37  GISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----- 87
             + ++ ++      A      ++D      +  +++ G SG GK+ LA    ++     
Sbjct: 104 KFTFNNYVIGDNNLFAYKLGMAILDG--KLSNSPLMIYGDSGLGKTHLAQAIGNEMIEKN 161

Query: 88  -SRSTRFSNIAKSLDSILIDTRKPVLL------EDIDLLDFNDTQLF------------- 127
                 ++   +  + ++    +   +       D+D+L  +D Q F             
Sbjct: 162 PESKVFYTTSTEFSNELIKSFSERTTISFKDKYADLDMLIVDDIQFFENIFGKGDDKIQK 221

Query: 128 ---HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
              +  N++H  +  +++ +  +P         L SRL +  +V++ +PD      +I  
Sbjct: 222 EFYNAFNTLHMANKPIILISDKYPEELTNVEARLISRLVSGALVELKMPDKTSRISIIKT 281

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           +     I +D++L  +I   +E ++   E  V+ +   A      + + +  + L +
Sbjct: 282 IITKENIPMDQELMYFIADELETNIRELEGFVNTIVARAKLMNEVVNKKMIIDELNK 338


>gi|296125059|ref|YP_003632311.1| chromosomal replication initiator protein DnaA [Brachyspira
           murdochii DSM 12563]
 gi|296016875|gb|ADG70112.1| chromosomal replication initiator protein DnaA [Brachyspira
           murdochii DSM 12563]
          Length = 459

 Score = 61.7 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 28/220 (12%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94
              D+ +  +             S P +      + G  G GK+ L     +       +
Sbjct: 126 FRFDNFIQGNNNRYVFEAAKYVSSNPGKEYNPFYVYGSVGIGKTHLLQAIGNSYLEANPN 185

Query: 95  NIAKSLDSILIDTRKPVLLED-----------------------IDLLDFNDTQLFHIIN 131
                +D           L++                       ++       +LF I  
Sbjct: 186 AKVLYIDGSGFRDEYVSCLQNKKPEVFKRKYKSLDMLLLDDLQLLESAQETSKELFEIFQ 245

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
           ++      ++  +   P         L +R + + ++ I  P  +    +I +   D   
Sbjct: 246 ALDSAAKQMVFVSDKPPKELRNIESRLKNRFEKSLILSIEPPQYETRLAIIERKLFDLHT 305

Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
            ID+++  Y+ + +   +   E  +     L++   M IT
Sbjct: 306 SIDEEVMKYMAENITTDVRKIEGAIRA--YLSVRDLMKIT 343


>gi|305663892|ref|YP_003860180.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378461|gb|ADM28300.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
          Length = 480

 Score = 61.7 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 77/198 (38%), Gaps = 33/198 (16%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCL----------------ANIWSDKSRSTRFSN 95
            +  +  WP+   + ++L GP G GK+ L                A+ +  +S   R + 
Sbjct: 32  VLEWLKKWPNVQRKALLLYGPPGCGKTSLVEAIANEFKYELIEMNASDFRRRSDIERIAI 91

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            A S+ SI   TRK +LL+++D +    ++  +  I   + +    ++MTA         
Sbjct: 92  RASSMQSIFGKTRKIILLDEVDGISAKEDEGGIEAIKQLVEKTSVPVIMTANNP------ 145

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
             P L    + A +V+        +  V+ K+     +  D++   YI++R E  L  A 
Sbjct: 146 YDPSLRVLREIAEMVQFKKLSKSDMRMVLNKICRAENLRCDEEAIDYIIERAEGDLRAAI 205

Query: 214 KLVDK---------MDNL 222
             +           +D  
Sbjct: 206 NDLQAVGEGFGEVTLDRA 223


>gi|225626552|ref|ZP_03784591.1| chromosomal replication initiator protein DnaA [Brucella ceti str.
           Cudo]
 gi|225618209|gb|EEH15252.1| chromosomal replication initiator protein DnaA [Brucella ceti str.
           Cudo]
          Length = 566

 Score = 61.7 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 221 PLDPRYTFDTFVDGASNHVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 280

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 281 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 339

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 340 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 399

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 400 RLASAQCEDASLDIGEEILAHVARTV 425


>gi|85859697|ref|YP_461899.1| recombination factor protein RarA [Syntrophus aciditrophicus SB]
 gi|85722788|gb|ABC77731.1| ATPase, AAA family [Syntrophus aciditrophicus SB]
          Length = 478

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 33/200 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           VI  GP GSGK+ LA I + ++++  F+  +  L  +    +   ++E+ +    N+ Q 
Sbjct: 78  VIFWGPPGSGKTTLARIVAGETKAY-FAAFSAVLSGVKELRK---VVEEAEARWQNNRQK 133

Query: 126 --LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
             LF    H  N           +     L+ A T   S+ V  P L SR     V+ + 
Sbjct: 134 TVLFVDEIHRFNKAQQDAFLPHVESGLITLIGATTENPSFEVIAP-LLSR---CRVLVLK 189

Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDN 221
              D+ L +++ ++  DR        + +D+   AY+V   +   R+ + + + V  +  
Sbjct: 190 PFSDEDLVRILNRVLRDRRRGLGNLGLELDQDALAYLVHTADGDARTALNSLEAVASLLA 249

Query: 222 LALSRGMGITRSLAAEVLKE 241
               +   I+R    E L++
Sbjct: 250 AGEGQSSRISRVQVEEALQK 269


>gi|218961662|ref|YP_001741437.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans]
 gi|167730319|emb|CAO81231.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans]
          Length = 437

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 24/167 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            IL GP GSGK+ +A I    S     RFS +  S+  +    ++    + +       +
Sbjct: 59  FILWGPPGSGKTTIARIIEKNSGYNFIRFSAVLASISDVKAVMKEA---DYLHRTQNKRS 115

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T   S+ V +P L SR    TV  +  
Sbjct: 116 ILFIDEIHRFNKSQQDAFLPYVESGAIILIGATTENPSFEV-IPALLSR---CTVFVLEA 171

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             ++ L+ ++ + FA+ ++  D+++  ++ Q        A ++++ +
Sbjct: 172 LSENDLKIILKRGFAELKLEEDEEIINWMAQNAG---GDARRVLNDL 215


>gi|256158687|ref|ZP_05456570.1| chromosomal replication initiation protein [Brucella ceti
           M490/95/1]
          Length = 546

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 201 PLDPRYTFDTFVDGASNHVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405


>gi|256254092|ref|ZP_05459628.1| chromosomal replication initiation protein [Brucella ceti B1/94]
          Length = 540

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 195 PLDPRYTFDTFVDGASNHVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399


>gi|254713413|ref|ZP_05175224.1| chromosomal replication initiation protein [Brucella ceti
           M644/93/1]
 gi|254716230|ref|ZP_05178041.1| chromosomal replication initiation protein [Brucella ceti M13/05/1]
          Length = 540

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 71/206 (34%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV--VILVGPSGSGKSCL------- 80
           P     + D  +  ++      A R I    S   R   + +    G GK+ L       
Sbjct: 195 PLDPRYTFDTFVDGASNRVVLAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399


>gi|317050664|ref|YP_004111780.1| AAA ATPase central domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945748|gb|ADU65224.1| AAA ATPase central domain protein [Desulfurispirillum indicum S5]
          Length = 420

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 21/179 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            I  GP G+GK+ LA+I S +++S   +  A +  +  I        E + L     T L
Sbjct: 50  AIFTGPPGTGKTTLAHIISQRTQSHFATLNAVNAGTADIRAICKDAKE-LRLHQGQRTVL 108

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N I         +  + +L+ A T   S+ +  P L SR     + ++   D
Sbjct: 109 FIDEIHRFNKIQQDALLPEVESGNIILIGASTQNPSFALV-PALLSR---TVLFELHALD 164

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITR 232
           D+ + +++ +  A+  + +D +    I+           + ++ ++  A L +G  ITR
Sbjct: 165 DEDMGRLVERGCAELGVTMDDEAREAIMTLCS---GDGRRCLNTIEAAALLCQGNHITR 220


>gi|83944868|ref|ZP_00957234.1| Chromosomal replication initiator protein DnaA [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851650|gb|EAP89505.1| Chromosomal replication initiator protein DnaA [Oceanicaulis
           alexandrii HTCC2633]
          Length = 478

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 67/208 (32%), Gaps = 28/208 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKP---------- 110
           P   V   G  G GKS L    +  +     R   +  + +  L   +            
Sbjct: 170 PFNPVFFHGDYGVGKSHLLAAIAHSASLSGKRKKVLYLTAEEFLNGFQSALRARDVQPFK 229

Query: 111 --------VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
                   +L++D+  +      + +    + ++   +  +++ +   P    V    L 
Sbjct: 230 DLVRDCDMLLIDDVHFICGKPRTEDEFLQTVTALISAEKQVVLASHCAPSQLSVSDDRLR 289

Query: 160 SRLKAATVVKISLPDDDFLEKVIV-KMFADRQ----IFIDKKLAAYIVQRMERSLVFAEK 214
           + L       +  PD D   K++  K+   R     + + + +  ++  R+  S    E 
Sbjct: 290 NILAGGFNCPLQGPDLDLRRKILDCKIAQARNHCPDLEVPETVRDFLAARVTSSARELEG 349

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
           +++ +          +T     E L E 
Sbjct: 350 VLNNIIVRTAYMNRPVTMETVEEALGEL 377


>gi|322419817|ref|YP_004199040.1| AAA ATPase central domain-containing protein [Geobacter sp. M18]
 gi|320126204|gb|ADW13764.1| AAA ATPase central domain protein [Geobacter sp. M18]
          Length = 434

 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP GSGK+ LA I +   KS    FS I   +  I    ++    E+        T
Sbjct: 51  LIFWGPPGSGKTTLARIIAGATKSHFIFFSAIMSGIKEIREVVKEA---EETLKYHGRRT 107

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  ++ A T   S+ V  P L SR     V+ ++ 
Sbjct: 108 ILFVDEIHRFNKSQQDAFLPYVERGTFTMIGATTENPSFEVIAP-LLSR---CKVLVLNP 163

Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224
             ++ + +++     DR       ++    +  A++    E++   A   ++ ++  A L
Sbjct: 164 LSEEEIRQILQNALTDRERGLGESELTAAPEALAFMA---EQAGGDARVALNTLETAARL 220

Query: 225 SRGMGITRSLAAEVLKE 241
           +R   IT   A E  ++
Sbjct: 221 ARDREITLETAREASQK 237


>gi|307596341|ref|YP_003902658.1| AAA ATPase central domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307551542|gb|ADN51607.1| AAA ATPase central domain protein [Vulcanisaeta distributa DSM
           14429]
          Length = 435

 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 75/200 (37%), Gaps = 30/200 (15%)

Query: 53  VRLIDSWPSW-PSRVVI-LVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------- 99
           +  I+ W    PS+  + LVGP G+GK+ LA   +++         A             
Sbjct: 30  LDWINDWEKGKPSKKAVMLVGPPGTGKTTLAYALANERGYEVLELNASDVRTGERIRQVM 89

Query: 100 -----LDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWG 152
                + S+     + +L +++D L+  +    L  I+  I +    ++MTA      W 
Sbjct: 90  GGSMKMGSLFGFKGRIILFDEVDGLNVREDRGGLAAIVELIRESTWPIIMTANNP---WD 146

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
               +L      A V+++   D+D +  ++ ++     I  ++     I    E S    
Sbjct: 147 PKFRELR---DEAEVIQLKPLDEDDILTILRRICNAEGIKCEEDALKLIA---ESSGGDV 200

Query: 213 EKLVDKMDNLALSRGMGITR 232
              ++ +   A      +T+
Sbjct: 201 RAAINDL-QAAAEGKKVLTK 219


>gi|114778425|ref|ZP_01453270.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans
           PV-1]
 gi|114551269|gb|EAU53827.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans
           PV-1]
          Length = 239

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 23/224 (10%)

Query: 21  PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKS 78
           P   + +L  S P        D + H  +++A    D    W      + L     +GK+
Sbjct: 2   PVQSQMRLALSLPERYDYG--DWIRHDGVDEA---CDRMALWCVHGGSLWLRSLDPAGKT 56

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILI---------DTRKPVLLEDIDLLDFN---DTQL 126
            L    + +S +     ++   D                  + + D+            L
Sbjct: 57  HLLRTLARESDNIALLEVSALSDLPAWQLVEQWMRELEGSSMWMLDVQPGVLAVPVAQAL 116

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP-DDDFLEKVIVKM 185
           FH +        ++ +  R    +     P+L SRL A     ++ P DDD L  ++   
Sbjct: 117 FHCLERGRDQQRAVTLAWRGDVTALP---PELSSRLLAMEQCVLAPPSDDDALLNILHSS 173

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
               Q  I +++   ++  + R L     ++ +++  +  +   
Sbjct: 174 AGRLQWEIRQQVLQAMLTYLPRQLDVLIPVLRELERRSFEQHHR 217


>gi|86169609|gb|ABC87044.1| chromosomal replication initiation protein [Weissella hellenica]
          Length = 231

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 29/161 (18%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   ++++D+  L   +    + F+  N+I + +  +++T+   P         L +R  
Sbjct: 43  STDLLMVDDVQFLAGKEKIQEEFFNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFG 102

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSL----------- 209
                 I+ PD      ++        + I   +   I   ++   R L           
Sbjct: 103 QGYSANITKPDLPTRVAILRNKSDLENLSIPNDVIDEIAAAVDTNVRDLEGVFNQVVGKM 162

Query: 210 ---------VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                      A  +++ M+     R   IT  L  E +  
Sbjct: 163 RFSNVPITVETARTILETMN---FKRQRAITIPLIQEAVAN 200


>gi|238061913|ref|ZP_04606622.1| chromosomal replication initiator protein dnaA [Micromonospora sp.
           ATCC 39149]
 gi|237883724|gb|EEP72552.1| chromosomal replication initiator protein dnaA [Micromonospora sp.
           ATCC 39149]
          Length = 160

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 23/129 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSILIDTRK------- 109
               + + G SG GK+ L +           +RS R+ +  +  +  +   R        
Sbjct: 31  AYNPLFIYGSSGLGKTHLLHAIGHYATTLGNARSVRYVSTEEFTNDFINSVRDDKTSAFQ 90

Query: 110 -------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
                   +L++DI  L+  +    + FH  N++H  +  +++T+   P         L 
Sbjct: 91  RRYRDVDILLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVVTSDRSPKQLATLEDRLR 150

Query: 160 SRLKAATVV 168
           +R +   + 
Sbjct: 151 TRFEWGLLA 159


>gi|260169591|ref|ZP_05756402.1| chromosomal replication initiation protein [Brucella sp. F5/99]
 gi|261759117|ref|ZP_06002826.1| chromosomal replication initiation protein [Brucella sp. F5/99]
 gi|265997193|ref|ZP_06109750.1| chromosomal replication initiator protein dnaA [Brucella ceti
           M490/95/1]
 gi|261739101|gb|EEY27097.1| chromosomal replication initiation protein [Brucella sp. F5/99]
 gi|262551661|gb|EEZ07651.1| chromosomal replication initiator protein dnaA [Brucella ceti
           M490/95/1]
          Length = 496

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 151 PLDPRYTFDTFVDGASNHVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 210

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 211 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 269

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 270 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 329

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 330 RLASAQCEDASLDIGEEILAHVARTV 355


>gi|261321147|ref|ZP_05960344.1| chromosomal replication initiator protein dnaA [Brucella ceti
           M644/93/1]
 gi|261293837|gb|EEX97333.1| chromosomal replication initiator protein dnaA [Brucella ceti
           M644/93/1]
          Length = 496

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 71/206 (34%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV--VILVGPSGSGKSCL------- 80
           P     + D  +  ++      A R I    S   R   + +    G GK+ L       
Sbjct: 151 PLDPRYTFDTFVDGASNRVVLAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 210

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 211 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 269

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 270 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 329

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 330 RLASAQCEDASLDIGEEILAHVARTV 355


>gi|261221232|ref|ZP_05935513.1| chromosomal replication initiator protein dnaA [Brucella ceti
           B1/94]
 gi|260919816|gb|EEX86469.1| chromosomal replication initiator protein dnaA [Brucella ceti
           B1/94]
          Length = 494

 Score = 60.2 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80
           P     + D  +  ++   A+    +     S       + +    G GK+ L       
Sbjct: 149 PLDPRYTFDTFVDGASNHVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 209 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 267

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 268 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 327

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 328 RLASAQCEDASLDIGEEILAHVARTV 353


>gi|261218003|ref|ZP_05932284.1| chromosomal replication initiator protein dnaA [Brucella ceti
           M13/05/1]
 gi|260923092|gb|EEX89660.1| chromosomal replication initiator protein dnaA [Brucella ceti
           M13/05/1]
          Length = 494

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 71/206 (34%), Gaps = 30/206 (14%)

Query: 33  PRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV--VILVGPSGSGKSCL------- 80
           P     + D  +  ++      A R I    S   R   + +    G GK+ L       
Sbjct: 149 PLDPRYTFDTFVDGASNRVVLAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208

Query: 81  --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
                         A  +  +  +    N A S    L D    ++++D+  L       
Sbjct: 209 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 267

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           +  H++N++      +++ A   P         + SRL+    ++++ PD +   +++ +
Sbjct: 268 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 327

Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209
             A  Q       +   I+  + R++
Sbjct: 328 RLASAQCEDASLDIGEEILAHVARTV 353


>gi|139439857|ref|ZP_01773222.1| Hypothetical protein COLAER_02256 [Collinsella aerofaciens ATCC
           25986]
 gi|133774785|gb|EBA38605.1| Hypothetical protein COLAER_02256 [Collinsella aerofaciens ATCC
           25986]
          Length = 547

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 70/207 (33%), Gaps = 40/207 (19%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----- 66
           VP +Q  D                   + ++ +       A R    + +          
Sbjct: 172 VPAEQNTDGA---------PLAANSKFTFENFVYGPENSHAYRSALKFAALADERGTCTS 222

Query: 67  VILVGPSGSGKSCLANIW----SDKSRS--TRFSNIAKSLDSILID-------------- 106
           + + G SG GK+ L        ++KS     +++N    LD ++ +              
Sbjct: 223 LFIYGKSGLGKTHLLLAIKNELAEKSPEIKVKYANSQAYLDDLMTEFDRQKKSNAPIMQA 282

Query: 107 --TRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                 ++++DI  +      +   F +++   + +  +++ A   P    +    L SR
Sbjct: 283 YHGVDVLIIDDIQNIIGKRASVDYFFQLMDEFIRNNKKVVIAADRAPKDLSMD-ERLTSR 341

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD 188
             A  +  ++ P  +   K++ + + +
Sbjct: 342 FNAGMLCLVAEPSYEMKYKILQRYYEN 368


>gi|297200939|ref|ZP_06918336.1| chromosomal replication initiator protein DnaA [Streptomyces
           sviceus ATCC 29083]
 gi|297147773|gb|EDY60923.2| chromosomal replication initiator protein DnaA [Streptomyces
           sviceus ATCC 29083]
          Length = 505

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 28/158 (17%)

Query: 35  CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90
                 D  ++ ++      A   +   P+     + + G SG GK+ L +     +RS 
Sbjct: 349 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 408

Query: 91  -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128
                 R+ +  +  +  +   R                +L++DI  L   +    + FH
Sbjct: 409 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 468

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAA 165
             N++H  +  +++++   P    V L D L +R +  
Sbjct: 469 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWV 505


>gi|253700393|ref|YP_003021582.1| recombination factor protein RarA [Geobacter sp. M21]
 gi|251775243|gb|ACT17824.1| AAA ATPase central domain protein [Geobacter sp. M21]
          Length = 434

 Score = 60.2 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 76/194 (39%), Gaps = 26/194 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP GSGK+ LA I ++ + S     S I   +  I    ++    ED        T
Sbjct: 52  LIFWGPPGSGKTTLARIIANATSSHFIFFSAIMSGIKEIREVVKEA---EDTLKYQGKRT 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  ++ A T   S+ V  P L SR     V+ +  
Sbjct: 109 ILFVDEIHRFNKSQQDAFLPHVERGTFTIIGATTENPSFEVIAP-LLSR---CKVLVLQP 164

Query: 173 PDDDFLEKVIVKMFADRQIFIDK----KLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRG 227
             D+ L K++    ADR+  +        A  +    E++   A   ++ ++  + L+  
Sbjct: 165 LSDEDLLKILEIALADRERGLGDLELGATAEALAFMAEQAAGDARVALNTLETASRLAHH 224

Query: 228 MGITRSLAAEVLKE 241
             IT   A E +++
Sbjct: 225 GEITLESAREAVQK 238


>gi|261417132|ref|YP_003250815.1| Chromosomal replication initiator DnaA [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373588|gb|ACX76333.1| Chromosomal replication initiator DnaA [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 487

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 65/231 (28%), Gaps = 56/231 (24%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RV 66
            +P  +K      + +Q           + ++ +       A R   +    P       
Sbjct: 104 VIPRPEKKKAEVKRPKQ---PLALYARYTFENFVEGECNSTAFRACQAVAENPGDPALNP 160

Query: 67  VILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKPV--L 112
           + + G SG GK+ L    + K +            +  F   A ++ S L +    V  L
Sbjct: 161 LFVYGESGLGKTHLLQSIAAKIQKSRPEASIVYCHAYDFLRDATAMASALHNKTGNVREL 220

Query: 113 LEDI------------------DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            E                    +   +   +L  +I  +      ++++    P  + V 
Sbjct: 221 AEKFRERYELCDVLLLDDVQLLEKGLWTQDRLAILIKHLRAEGKQVVISCDRHPNLFRVV 280

Query: 155 LPD-----------------LCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             D                 L + L +   V I  PD      +I K   D
Sbjct: 281 DTDNESRGSSRSSIPSISKKLLAPLASCVAVGIDEPDLATRMNLISKKSED 331


>gi|149003109|ref|ZP_01828018.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147758850|gb|EDK65846.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP14-BS69]
          Length = 270

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 27/159 (16%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
                   + D+ +       AV     +    +     + + G  G GK+ L N   ++
Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171

Query: 88  -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123
                  +      A+S  +  +D               +   +L++DI  L        
Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
            + F+  N++H     +++T+   P         L +R 
Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRF 270


>gi|86169595|gb|ABC87037.1| chromosomal replication initiation protein [Leuconostoc gelidum
           KCTC 3527]
          Length = 231

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           T   +L++DI      +    + F+  N + +    ++MT+   P        DL SRL 
Sbjct: 43  TVDLLLIDDIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLT 98

Query: 164 ----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               A   + I  PD      ++  +     + I   +   I  +++ ++   E    + 
Sbjct: 99  SRFEAGISMDIQKPDLPTRVAILKNLAETDNLEIPNDVLELIADKIDSNIRTLEGTFHRF 158

Query: 220 DNLALSRGMGITRSLAAEVLKET 242
           + +   R    T+  A ++L + 
Sbjct: 159 EAMLRYRNKPATKETAQKILGDL 181


>gi|118580657|ref|YP_901907.1| recombination factor protein RarA [Pelobacter propionicus DSM 2379]
 gi|118503367|gb|ABK99849.1| Recombination protein MgsA [Pelobacter propionicus DSM 2379]
          Length = 448

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 78/196 (39%), Gaps = 31/196 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKPVL-L 113
           +I  GP G GK+ LA++ + ++R+                 I +  + +    R+ +L +
Sbjct: 64  LIFWGPPGCGKTTLAHVIARETRAHFIFFSAILSGIKEIREIFREAEGVASRGRRTILFV 123

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   + +    F       +     ++ A T   S+ V  P L SR     V+ +   
Sbjct: 124 DEIHRFNKSQQDAFLPY---VEKGVVTMIGATTENPSFEVIAP-LLSR---CRVLTLKQL 176

Query: 174 DDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LS 225
           +   +  +I +  ADR        + I ++   ++ ++       A   ++ ++  A L+
Sbjct: 177 EPSTIAGLIGQALADRERGLGELGLDISEEGLDFLSRQAG---GDARVALNTLEVAAGLA 233

Query: 226 RGMGITRSLAAEVLKE 241
           R   I+     E L++
Sbjct: 234 RERLISLETVQEALQK 249


>gi|187250573|ref|YP_001875055.1| DNA replication initiation ATPase [Elusimicrobium minutum Pei191]
 gi|186970733|gb|ACC97718.1| ATPase involved in DNA replication initiation [Elusimicrobium
           minutum Pei191]
          Length = 1097

 Score = 59.4 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 36/178 (20%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWP 63
           D+S  + D++K++ P           P     + D +++ +   A   A+ +ID+ P   
Sbjct: 692 DHSIELADREKHNWP--------LEVPLVPTYTFDSMVIGANRFAHATAISVIDN-PGNL 742

Query: 64  SRVVILVGPSGSGKSCLANIWSDK------------SRSTRFSNIAKSLD--------SI 103
              ++L G +G+GK+   N                 +   RFS   +             
Sbjct: 743 YNPLVLHGATGTGKTHFLNAIGYALSKKYGQQNIFLTNGVRFSRGIQRYVVEGKINTFEE 802

Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
            +   K VL++DI L   N+     +   +N   Q +  +++T++  P S    L +L
Sbjct: 803 FVKNTKAVLIDDIHLTAVNEQNREYISKYLNYFLQSNKQIVITSKYPPESLA-KLEEL 859


>gi|302327394|gb|ADL26595.1| chromosomal replication initiator protein DnaA [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 481

 Score = 59.4 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 65/231 (28%), Gaps = 56/231 (24%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RV 66
            +P  +K      + +Q           + ++ +       A R   +    P       
Sbjct: 98  VIPRPEKKKAEVKRPKQ---PLALYARYTFENFVEGECNSTAFRACQAVAENPGDPALNP 154

Query: 67  VILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKPV--L 112
           + + G SG GK+ L    + K +            +  F   A ++ S L +    V  L
Sbjct: 155 LFVYGESGLGKTHLLQSIAAKIQKSRPEASIVYCHAYDFLRDATAMASALHNKTGNVREL 214

Query: 113 LEDI------------------DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            E                    +   +   +L  +I  +      ++++    P  + V 
Sbjct: 215 AEKFRERYELCDVLLLDDVQLLEKGLWTQDRLAILIKHLRAEGKQVVISCDRHPNLFRVV 274

Query: 155 LPD-----------------LCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             D                 L + L +   V I  PD      +I K   D
Sbjct: 275 DTDNESRGSSRSSIPSISKKLLAPLASCVAVGIDEPDLATRMNLISKKSED 325


>gi|291294968|ref|YP_003506366.1| AAA ATPase [Meiothermus ruber DSM 1279]
 gi|290469927|gb|ADD27346.1| AAA ATPase [Meiothermus ruber DSM 1279]
          Length = 274

 Score = 59.4 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 22/145 (15%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----SRSTRFSNIAKSL 100
           VH+    A   I++  ++   ++ L GP G GK+ LA   + +     R  RF +    L
Sbjct: 105 VHAGNRAA---IEAARAYRGGLLYLWGPPGVGKTHLALRLAGRLVGEGRFVRFHSELDFL 161

Query: 101 DSILIDTRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPV 149
               +       L   + L  +D            +L+ ++         L++T+   P 
Sbjct: 162 AEERLAAAGEGALPQYERLILDDGGKARISPFSAERLYALVERASAGGCDLILTSNLSPE 221

Query: 150 SWGVCLPD----LCSRLKAATVVKI 170
           ++   L +    + SR+K + VV++
Sbjct: 222 AFAARLGEVGEAVLSRIKGSEVVEV 246


>gi|119713533|gb|ABL97586.1| ATPase AAA family protein [uncultured marine bacterium EB0_35D03]
          Length = 417

 Score = 59.0 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 78/188 (41%), Gaps = 24/188 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND--T 124
           ++  GPSG GK+ LA I   +  +  F  ++  LD I        ++E  +L   +D  T
Sbjct: 44  MVFWGPSGVGKTTLARIICSQMGAH-FEQMSAVLDGIKELRN---VIEHAELYKQHDKNT 99

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     L+ A T   S+ +    L SR++   V  ++ 
Sbjct: 100 ILFVDEIHRFNKAQQDAFLPHIESGLITLIGATTENPSFEIN-SSLLSRMR---VYILNK 155

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
             D+ L+ +  K    ++I +       +   +E S   A +L++ ++ L       ++ 
Sbjct: 156 LRDEDLKIIASKAIKSQKITLKDN--DALSLIIEHSDGDARRLINIIEQLTDKSNRTLSI 213

Query: 233 SLAAEVLK 240
           +  +++L+
Sbjct: 214 NDVSKILQ 221


>gi|302336540|ref|YP_003801747.1| Chromosomal replication initiator DnaA [Olsenella uli DSM 7084]
 gi|301320380|gb|ADK68867.1| Chromosomal replication initiator DnaA [Olsenella uli DSM 7084]
          Length = 532

 Score = 59.0 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 56/182 (30%), Gaps = 33/182 (18%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD---- 86
               ++ D  +       A        +        + + G SG GK+ L     +    
Sbjct: 173 VDSKLTFDRFVAGEENMLAYEAAKQVANGENKSYNPLFIHGKSGLGKTHLLRAIQNYIVH 232

Query: 87  ---------KSRSTRFSNIAKSLDSILIDTRKPV--LLEDIDLLDFNDTQ---------- 125
                    ++ +        + +      R  +    +++D+L  +D Q          
Sbjct: 233 NDPSRLCVYRTAAEFIEEYRIAWNDSETSARSVLSKSYQNVDVLIIDDIQNMRTAAGTIR 292

Query: 126 -LFHIINSIHQYDSSLLMTARTFPVSWGVCLP--DLC--SRLKAATVVKISLPDDDFLEK 180
             F   N++  +   ++  A   P+  G      D    SR+ +   V I +PD +    
Sbjct: 293 FFFETFNALVSHGKQIVCAADRSPLQLGTGDSKFDERETSRMDSGVTVSIQVPDYELKLN 352

Query: 181 VI 182
           +I
Sbjct: 353 LI 354


>gi|322435979|ref|YP_004218191.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321163706|gb|ADW69411.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 445

 Score = 59.0 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 34/199 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +I  GP G GK+ LA I + K++++     A       I   K V++E      F     
Sbjct: 58  MIFWGPPGVGKTTLAKIIAQKTQASFIEFSAVLSG---IKEIKNVMVEAEKASQFGSRTI 114

Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           LF    H  N           +  +  L+ A T   S+ +    L SR     V  +   
Sbjct: 115 LFVDEIHRFNKAQQDAFLPYVERGTIRLIGATTENPSFEINAA-LLSR---CRVYTLQPL 170

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LS 225
            +D +  ++ +  AD         +  D+   A I          A   ++ ++  A L+
Sbjct: 171 SEDEVIALLRRALADSEYGLGESGVEADEDALASIAAYAS---GDARTALNALEVAAQLA 227

Query: 226 RGMG---ITRSLAAEVLKE 241
            G G   IT+ LAAE ++ 
Sbjct: 228 TGRGETTITKPLAAEAMQR 246


>gi|86169615|gb|ABC87047.1| chromosomal replication initiation protein [Weissella halotolerans]
          Length = 224

 Score = 59.0 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 58/181 (32%), Gaps = 29/181 (16%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTA 144
           + + R    A         +   ++++D+  L   +    + F+  N+I + ++ +++T+
Sbjct: 17  TEALRRGPKATEAFKREYRSTDLLMVDDVQFLSGKEKIQEEFFNTFNAITRENNQIVLTS 76

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P         L +R        I+ PD      ++        + I   +   I   
Sbjct: 77  DKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILRNKSDQEGLNIPNDVIDEIAAA 136

Query: 205 ME---RSLV--------------------FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           ++   R L                      A  +++ M+     R   IT  +  +++  
Sbjct: 137 VDTNVRDLEGVFNQVVGKMRFSNAPITVDTARSILETMN---FKRQRAITIPIIQDIVAR 193

Query: 242 T 242
            
Sbjct: 194 Y 194


>gi|23014789|ref|ZP_00054589.1| COG0593: ATPase involved in DNA replication initiation
           [Magnetospirillum magnetotacticum MS-1]
          Length = 210

 Score = 59.0 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 39/111 (35%)

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
                ++++A   P         L SR+    V  I     +    ++          + 
Sbjct: 2   DQGRQIVISADKSPSDLEGIEERLRSRMACGLVADIHATTYELRLGILQSKAEQMGAIVP 61

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
           +K+  ++  ++  ++   E  ++++   +   G  IT     EVL +  + 
Sbjct: 62  QKVLEFLAHKIISNIRELEGALNRVVAHSQLVGRAITLETTQEVLHDLLRA 112


>gi|308274127|emb|CBX30726.1| Chromosomal replication initiator protein dnaA [uncultured
           Desulfobacterium sp.]
          Length = 453

 Score = 59.0 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 85/255 (33%), Gaps = 38/255 (14%)

Query: 27  QLFFS-FPRCLGISR--------DDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSG 74
           QL            R        D  +V    E A      + +  +     + L+  +G
Sbjct: 100 QLPLPNENIQPHYGRFLRKDFTFDHFVVGGNNEFAFTASLSLAAKKNSQQNCLFLLSKTG 159

Query: 75  SGKSCLA-----NIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VLL 113
            GKS L+     +I S       +   A+   + ++   +                 +LL
Sbjct: 160 MGKSHLSQAVGHHIISQYPEERVYYLTAEDFSNEMVQAYRTDSIDKFKGKYRKECDILLL 219

Query: 114 EDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVK 169
           ED+  L   +    +L   ++++   D  ++ ++   P      L D L SR     +  
Sbjct: 220 EDVHSLSGKERTQIELALTLDTLLDADKKIIFSSCYLPGDIP-KLNDKLKSRFSYGIISS 278

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           I  P+     +++ K        + +++  Y+   +   +   E  +  +   +   G+ 
Sbjct: 279 IEPPNFRTRVRILQKKMLSNGYQVQEEVINYLASELTEDVRQLESGLIGVTARSSLMGIP 338

Query: 230 ITRSLAAEVLKETQQ 244
           I   LA  V+K   Q
Sbjct: 339 INLELAENVVKNIAQ 353


>gi|213422285|ref|ZP_03355351.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 82

 Score = 59.0 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   +L++DI      +    + FH  N++ + +  +++T+  +P         L SR  
Sbjct: 6   SVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFG 65

Query: 164 AATVVKISLPD 174
               V I  P+
Sbjct: 66  WGLTVAIEPPE 76


>gi|225872629|ref|YP_002754086.1| ATPase, AAA family [Acidobacterium capsulatum ATCC 51196]
 gi|225792545|gb|ACO32635.1| ATPase, AAA family [Acidobacterium capsulatum ATCC 51196]
          Length = 448

 Score = 59.0 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 37/201 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124
           +I  GP G GK+ LA I ++ + ++     A       I      ++ D +      + T
Sbjct: 58  MIFWGPPGVGKTTLAKIVAETTHASFIEFSAVLSGIKEIKQ----VMADAEKASTYGSRT 113

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ V    L SR     V  +  
Sbjct: 114 ILFVDEIHRFNRAQQDAFLPYVERGTIRLIGATTENPSFEVNAA-LLSR---CRVYTLQA 169

Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224
             +D L  ++ +  ADR        +  D    A I    + S   A   ++ ++  A L
Sbjct: 170 LTEDDLVSLLERAAADRERGLGNMGVTFDADALALIA---DYSSGDARNALNALEVAAKL 226

Query: 225 SRGM----GITRSLAAEVLKE 241
           ++       ++R LA E L++
Sbjct: 227 AQSREENPRVSRELAQEALQQ 247


>gi|86169607|gb|ABC87043.1| chromosomal replication initiation protein [Weissella
           paramesenteroides]
          Length = 244

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 29/161 (18%)

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +   ++++D+  L   +    + F+  N+I + +  +++T+   P         L +R  
Sbjct: 47  STDLLMVDDVQFLAGKEKIQEEFFNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFG 106

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSL----------- 209
                 I+ PD      ++        + I   +   I   ++   R L           
Sbjct: 107 QGYSANITKPDLPTRVAILRNKSDLENLSIPNDVIDEIAAAVDTNVRDLEGVFNQVVGKM 166

Query: 210 ---------VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                      A  +++ M+     R   IT  +  E +  
Sbjct: 167 RFSNVPVTVETARTILETMN---FKRQRAITIPIIQEAVAN 204


>gi|219849982|ref|YP_002464415.1| recombination factor protein RarA [Chloroflexus aggregans DSM 9485]
 gi|219544241|gb|ACL25979.1| AAA ATPase central domain protein [Chloroflexus aggregans DSM 9485]
          Length = 485

 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 37/201 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDT 124
           +IL GP GSGK+ LA I ++ + +  F  ++     +    R  V+ E  D L      T
Sbjct: 62  LILWGPPGSGKTTLAQIIANSTNAH-FEPLSAVSAGVNDLRR--VVQEAKDRLGMFQQRT 118

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ V    L SR   A V  +  
Sbjct: 119 VVFIDEIHRFNKSQQDAILPYVEDGTIILIGATTENPSFEVNAA-LLSR---ARVFTLEA 174

Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL--- 222
             D+ +  +I +  +DR       +I +      Y++     S   A   ++ ++     
Sbjct: 175 LTDEEIGILIDRALSDRERGLGGMKIMLASDARKYLINM---SNGDARTALNALEAAARS 231

Query: 223 ---ALSRGMGITRSLAAEVLK 240
              A+     IT     + L+
Sbjct: 232 KPPAIGETRLITVDDIRDALQ 252


>gi|309791858|ref|ZP_07686343.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6]
 gi|308226098|gb|EFO79841.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6]
          Length = 486

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 37/201 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP GSGK+ LA I +  + +        S  +  +   + V+ E  D L     + 
Sbjct: 61  IILWGPPGSGKTTLARIVASSTNAHF---TQVSAVNAGVADLRAVIQEAQDRLGMYQQRT 117

Query: 126 -LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T   S+ V    L SR   A V  +  
Sbjct: 118 VLFIDEIHRFNKGQQDAVLPYVEDGTIILIGATTENPSFEVNSA-LLSR---ARVFTLQA 173

Query: 173 PDDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNL--- 222
             D  + +++ +  AD  R +      +      Y++         A   ++ ++     
Sbjct: 174 LSDAEIGQLVDRALADAERGLATYQPMLATDARGYLINMAN---GDARTALNALEAAVLA 230

Query: 223 ---ALSRGMGITRSLAAEVLK 240
              +L     IT     + L+
Sbjct: 231 KAPSLGDKRLITLDDIRDALQ 251


>gi|221632458|ref|YP_002521679.1| recombination factor protein RarA [Thermomicrobium roseum DSM 5159]
 gi|221157227|gb|ACM06354.1| ATPase, aaa family [Thermomicrobium roseum DSM 5159]
          Length = 450

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 32/194 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124
           +IL GP G GK+ LA + +  +RS        S  S  +   + V+ E  D        T
Sbjct: 56  LILWGPPGCGKTTLARLIAKHTRSAFVP---LSAVSASVADIRRVVQEASDRFAQHGQRT 112

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ +  P L SR     VV +  
Sbjct: 113 IVFIDEIHRFNRAQQDALLPAVEDGTIVLIGATTENPSFEINAP-LLSR---CRVVVLEP 168

Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL- 224
             D  ++ ++ +   DR        + I+ +    +V         A   ++ ++  A  
Sbjct: 169 LSDQAIQTLVERALVDRERGLGELGLRIEPEALRLLVGLAN---GDARMALNTLEVAAAG 225

Query: 225 SRGMGITRSLAAEV 238
           ++   IT  L  + 
Sbjct: 226 AQEGTITVELVHQA 239


>gi|18129331|emb|CAC83489.1| DnaA protein [Wolbachia endosymbiont of Brugia pahangi]
          Length = 163

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 46/112 (41%), Gaps = 1/112 (0%)

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
             +  L+++A   P         + SRL    V  I+    +    ++        +++ 
Sbjct: 2   DQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVP 61

Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + +  ++ + +  ++   E  ++K+ + +L  G  +T   A+E L +  + +
Sbjct: 62  QDVLEFLARNIRSNIRELEGALNKVAHTSLI-GRSMTVESASETLMDLLRSN 112


>gi|86169613|gb|ABC87046.1| chromosomal replication initiation protein [Weissella viridescens]
          Length = 236

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 56/178 (31%), Gaps = 23/178 (12%)

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTA 144
           + + R    A         +   ++++D+  L   +    + F+  N+I + ++ +++T+
Sbjct: 27  TEALRRGPKATEAFKREYRSTDLLMVDDVQFLAGKEKIQEEFFNTFNAITRENNQIVLTS 86

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              P         L +R        I+ PD      ++        + I   +   I   
Sbjct: 87  DKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILRNKSDQENLNIPNDVIDEIAAA 146

Query: 205 ME---RSLVFAEKLV-----------------DKMDNLALSRGMGITRSLAAEVLKET 242
           ++   R L      V                   ++ ++  R   IT  +  + +   
Sbjct: 147 VDTNVRDLEGVFNQVVGKMKFSKADVTVETARSILEKMSFKRQRAITVPIIQDTVATY 204


>gi|148263766|ref|YP_001230472.1| recombination factor protein RarA [Geobacter uraniireducens Rf4]
 gi|146397266|gb|ABQ25899.1| Recombination protein MgsA [Geobacter uraniireducens Rf4]
          Length = 435

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP GSGK+ LA I +   KS    FS I   +  I    ++    +DI       T
Sbjct: 55  LIFWGPPGSGKTTLARIIAGATKSHFIFFSAILSGIKEIREIVKEA---DDIRKFHGKRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     ++ A T   S+ V  P L SR     V+ ++ 
Sbjct: 112 ILFVDEIHRFNKSQQDAFLPYVERGVFTIIGATTENPSFEVIAP-LLSR---CKVLVLNP 167

Query: 173 PDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224
             ++ +  ++ +  AD  R      + I+     ++    E++   A   ++ ++  + L
Sbjct: 168 LTEEEITGILRQALADKERGLGALDLAIEDDALTFMA---EQAGGDARVALNTLETASRL 224

Query: 225 SRGMGITRSLAAEVLKE 241
           +    ++   A E +++
Sbjct: 225 TSNGVVSLDTAREAVQK 241


>gi|317486108|ref|ZP_07944955.1| bacterial dnaA helix-turn-helix domain-containing protein
           [Bilophila wadsworthia 3_1_6]
 gi|316922631|gb|EFV43870.1| bacterial dnaA helix-turn-helix domain-containing protein
           [Bilophila wadsworthia 3_1_6]
          Length = 516

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 43/184 (23%)

Query: 65  RVVILVGPSGSGKSCLANI--------------WSDKSR-STRFSNIAKSLDSILIDTRK 109
            +++L GP G+GK+ L                 ++  S     F+  +       + +++
Sbjct: 197 GLLVLCGPHGTGKTHLLRAIGNELFRTLGSDLYYASLSDLELLFAGRSVLAARQELLSKE 256

Query: 110 PVLLED-------------------IDLLDFND--------TQLFHIINSIHQYDSSLLM 142
            VL++D                     ++   +         +L  +++        +++
Sbjct: 257 AVLIDDFQHLSRIPDKTPTTASRFRAQIVAEPEQPAGPSVREELCLLLDRFMDQGKPVIV 316

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
                P  W +    L SRL+     ++  PD D   +   +    R++ + ++    I 
Sbjct: 317 AGVGRPKEWSLGKA-LLSRLETGLWAELPEPDLDVRLRYAQQQAKFRRLPLSREQLLLIA 375

Query: 203 QRME 206
           Q   
Sbjct: 376 QHCP 379


>gi|283778829|ref|YP_003369584.1| chromosomal replication initiator DnaA domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283437282|gb|ADB15724.1| Chromosomal replication initiator DnaA domain protein [Pirellula
           staleyi DSM 6068]
          Length = 398

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 81/189 (42%), Gaps = 29/189 (15%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98
             ++ LV  A E  ++  D    W +  ++  G SG+GK+ L  I +D+ R  R +  + 
Sbjct: 30  GSENALVQIAAEVVLQHDDR-RRWMNP-LVFCGSSGAGKTSLVQILADEKR--RLAPKSN 85

Query: 99  SLDSILIDTRKP----------------------VLLEDIDLLDF---NDTQLFHIINSI 133
            L  +  D  +                       ++L+D+  L        +L  +I+++
Sbjct: 86  VLHEVATDFARSYAHAVDTDSIADFRAKHTRCDLLVLDDLHRLAGKAAAQQELIAVIDAM 145

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            +  + +L+T +  P +    LP L SR+     + ++LP  +  + ++  + A + + +
Sbjct: 146 IRRGALVLLTLKNLPAATRGLLPMLASRISQGLTLSLALPGVEARDALLRVIAAQQGLLL 205

Query: 194 DKKLAAYIV 202
            ++LA  + 
Sbjct: 206 PEELAEQLA 214


>gi|302668625|ref|YP_003833073.1| chromosomal replication initiator protein DnaA2 [Butyrivibrio
           proteoclasticus B316]
 gi|302397589|gb|ADL36491.1| chromosomal replication initiator protein DnaA2 [Butyrivibrio
           proteoclasticus B316]
          Length = 281

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 27/161 (16%)

Query: 37  GISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN----------- 82
             S  +  V S      QA +LI          + + G  GSGK+ L             
Sbjct: 121 KYSFLNFRVSSGNYFAFQAAQLIIDPRKESYNPLYIYGDHGSGKTHLLKTIEDYINHESD 180

Query: 83  ------IWSDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQ---LFHII 130
                 I ++K  +           +  +D  +    +L++DID           L +II
Sbjct: 181 DKRAFYILAEKFINDVMDMKTNGNSNKFVDFYRSLDVLLIDDIDCFVGKSEASSELVNII 240

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           + +   +  L+ +++  P   G+    L SR++   + +I 
Sbjct: 241 DVMLNDEKQLVFSSQKEPRKLGIEEA-LISRIEKGLLARIE 280


>gi|118431492|ref|NP_147998.2| replication factor C large subunit [Aeropyrum pernix K1]
 gi|42559546|sp|Q9YBS5|RFCL_AERPE RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|116062817|dbj|BAA80523.2| replication factor C large subunit [Aeropyrum pernix K1]
          Length = 479

 Score = 57.9 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 80/198 (40%), Gaps = 27/198 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA------KSLDSILIDTRK--------- 109
           R  +L GP G GK+ L    + +         A        ++ I+    +         
Sbjct: 50  RAALLYGPPGVGKTSLVEAIASEFNLEMIELNASDYRRRSDIERIVGAASRKRSMFKRGV 109

Query: 110 PVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
            +LL+++D ++  +    +  +++ I   ++ ++MTA      W   L  L    + + +
Sbjct: 110 VILLDEVDGINPREDAGGIEALLSVIKTTENPIVMTANDP---WKDFLRPLR---EVSLM 163

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           V+        +  V+ ++    +I  +++   YI    ERS       ++ +  +A   G
Sbjct: 164 VEFRPLTLTHIVAVLQRICEAERIECEREALRYIA---ERSEGDLRSAINDLQAVAEGYG 220

Query: 228 MGITRSLAAEVLKETQQC 245
             +T +LA E+++  ++ 
Sbjct: 221 R-VTLTLAREIVRGREKS 237


>gi|269836458|ref|YP_003318686.1| AAA ATPase central domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785721|gb|ACZ37864.1| AAA ATPase central domain protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 460

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 28/158 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP GSGK+ LA I +  +++      A S     +      + E  D L  +  + 
Sbjct: 55  LILWGPPGSGKTTLARIIATVTKAEFVQVSAVSAGVADLRRE---VKEASDRLGMHGRRT 111

Query: 126 -LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T   S+ V  P L SR   + V+ +  
Sbjct: 112 ILFIDEIHRFNRAQQDAILPYVEDGTIILIGATTENPSFEVNSP-LLSR---SRVIVLKA 167

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQ 203
            DDD +  ++++   D       + + ID      +V 
Sbjct: 168 LDDDAVRTIVLRALEDPERGLGGQGLRIDDSALDLLVN 205


>gi|321472580|gb|EFX83549.1| hypothetical protein DAPPUDRAFT_239463 [Daphnia pulex]
          Length = 79

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
          L F      G    D  V ++   A   + SW  WP   +++ GPSG GK
Sbjct: 28 LTFLTTILSGFEPQDFDVEASNRDAFTWVKSWVQWPKPGLVIYGPSGCGK 77


>gi|159897930|ref|YP_001544177.1| IstB ATP binding domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890969|gb|ABX04049.1| IstB domain protein ATP-binding protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 267

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 33/156 (21%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP- 110
           AV    ++   P   + LVG  G GK+ LA    +  ++  F  +  +    L   R   
Sbjct: 99  AVGAAQAFADNPDGFLTLVGNPGCGKTHLAQAIGNALQARGFEVVWSTAPDALRLLRSTF 158

Query: 111 -----------------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTA 144
                                  +LL+D+   +  D     LF ++N  ++Y    ++T+
Sbjct: 159 DQTSNKPKNSFDEQFELFRKAPMLLLDDLGAENATDWGKETLFQLLNERYEYQRPTVITS 218

Query: 145 RTFPVSWGVCLP---DLCSRLK---AATVVKISLPD 174
              P +          LCSRL       +V +   D
Sbjct: 219 NLHPNTAEANRRFGMRLCSRLLDAVQGQLVVVQAAD 254


>gi|10198155|gb|AAG15220.1|AF288461_6 unknown [Chloroflexus aurantiacus]
          Length = 377

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 41/203 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDF--N 122
           +IL GP GSGK+ LA I +  +++     S ++  ++ +     + V+ E  D L     
Sbjct: 62  LILWGPPGSGKTTLAQIIAHSTKAHFEPISAVSAGVNDL-----RRVVQEAQDRLGMFQQ 116

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T +F    H  N           +  + +L+ A T   S+ V    L SR   A V K+
Sbjct: 117 RTVVFIDEIHRFNKSQQDAILPYVEDGTIILIGATTENPSFEVNSA-LLSR---ARVFKL 172

Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL- 222
               D+ +  +I +   DR       +I + +    Y+V         A   ++ ++   
Sbjct: 173 EALTDEEIGVLIDRALTDRERGLGDLKIMLARDARDYLVNMAN---GDARTALNALEAAA 229

Query: 223 -----ALSRGMGITRSLAAEVLK 240
                A+     IT     + L+
Sbjct: 230 RSKPPAIGETRLITVDDIRDALQ 252


>gi|163846016|ref|YP_001634060.1| recombination factor protein RarA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222523744|ref|YP_002568214.1| recombination factor protein RarA [Chloroflexus sp. Y-400-fl]
 gi|163667305|gb|ABY33671.1| AAA ATPase central domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447623|gb|ACM51889.1| AAA ATPase central domain protein [Chloroflexus sp. Y-400-fl]
          Length = 497

 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 41/203 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDF--N 122
           +IL GP GSGK+ LA I +  +++     S ++  ++ +     + V+ E  D L     
Sbjct: 62  LILWGPPGSGKTTLAQIIAHSTKAHFEPISAVSAGVNDL-----RRVVQEAQDRLGMFQQ 116

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T +F    H  N           +  + +L+ A T   S+ V    L SR   A V K+
Sbjct: 117 RTVVFIDEIHRFNKSQQDAILPYVEDGTIILIGATTENPSFEVNSA-LLSR---ARVFKL 172

Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL- 222
               D+ +  +I +   DR       +I + +    Y+V         A   ++ ++   
Sbjct: 173 EALTDEEIGVLIDRALTDRERGLGDLKIMLARDARDYLVNMAN---GDARTALNALEAAA 229

Query: 223 -----ALSRGMGITRSLAAEVLK 240
                A+     IT     + L+
Sbjct: 230 RSKPPAIGETRLITVDDIRDALQ 252


>gi|308270409|emb|CBX27021.1| Replication-associated recombination protein A [uncultured
           Desulfobacterium sp.]
          Length = 456

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 69/183 (37%), Gaps = 41/183 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I + ++ S      A       I      ++E+      N  +L
Sbjct: 60  MILWGPPGCGKTTLARIIARETSSYFMHFSAVLSGVKEIRA----VIEE----AKNQLKL 111

Query: 127 F-----------HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           F           H  N           +     L+ A T   S+ V  P L SR     V
Sbjct: 112 FRKRSILFVDEIHRFNKAQQDAFLHHVESGLITLIGATTENPSFEVISP-LLSR---CRV 167

Query: 168 VKISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           + +    DD + ++I     D  R      + + +++ +++V R+  S   A   ++ ++
Sbjct: 168 ITLKTLSDDDISRIIDSALKDKERGLGELNLSLSEEVLSHLV-RI--SDGDARMALNSLE 224

Query: 221 NLA 223
             A
Sbjct: 225 IAA 227


>gi|320354919|ref|YP_004196258.1| Recombination protein MgsA [Desulfobulbus propionicus DSM 2032]
 gi|320123421|gb|ADW18967.1| Recombination protein MgsA [Desulfobulbus propionicus DSM 2032]
          Length = 499

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 48/213 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED----IDLLD 120
             ++L GP GSGK+ LA I +        S       ++L   ++   + D    +   D
Sbjct: 91  PSLVLWGPPGSGKTTLATILAHA-----VSAHFVFFSAVLSGVKEIRQIVDQAKSVHEQD 145

Query: 121 FNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
              T LF    H  N           +     L+ A T   S+ +  P L SR     V+
Sbjct: 146 GRPTILFVDEIHRFNKSQQDAFLPHVESGLLTLIGATTENPSFQITAP-LLSR---CQVL 201

Query: 169 KISLPDDDFLEKVIVKM-------FADRQIFIDKKLAAYI-----------VQRMERSLV 210
            ++  D + L++V+ +        F D ++ ID +    +           +  +E    
Sbjct: 202 LLAPLDRNDLKQVMRRALIDTSVGFGDDRLTIDDQALDLLADTADGDCRRALNHLE---T 258

Query: 211 FAEKLVDKMDN--LALSRGMGITRSLAAEVLKE 241
            A   ++++     A      IT +   E L++
Sbjct: 259 AAALTLEQLKRQPAAGEAERTITVAQVRETLQQ 291


>gi|229918427|ref|YP_002887073.1| ATPase AAA [Exiguobacterium sp. AT1b]
 gi|229469856|gb|ACQ71628.1| AAA ATPase central domain protein [Exiguobacterium sp. AT1b]
          Length = 438

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 27/173 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G+GK+ LA + S+ +++T     A +     +D  + V+ E     D+ D 
Sbjct: 48  GTIILYGPPGTGKTTLARVISNYTKATFVQLNAVT---AKLDELRNVIREAESRYDYEDE 104

Query: 125 Q--LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +  LF    H  N           +    +L+ A T   S+ V    L SR   ATV ++
Sbjct: 105 RTILFLDEIHRFNKLQQDALLPALESGKLVLIGATTENPSFEVNAA-LLSR---ATVFRL 160

Query: 171 SLPDDDFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
             P  + L  V+ +   D R +      +D+  A + ++  +         ++
Sbjct: 161 EPPRAEELRTVLERALHDSRGLGNYPVKMDEAAADHYIKMADGDYRVLLNALE 213


>gi|15669074|ref|NP_247879.1| replication factor C large subunit [Methanocaldococcus jannaschii
           DSM 2661]
 gi|42559434|sp|Q58294|RFCL_METJA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|1591562|gb|AAB98888.1| activator 1 (replication factor C), 53 KD subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 516

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 26/176 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPV 111
           ++LVGP G GK+ LA   ++          A                +  S +   +  +
Sbjct: 42  ILLVGPPGCGKTTLAYALANDYGFEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLI 101

Query: 112 LLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           +L+++D +   +    +  +I  I +  + +++TA           P + S L    V++
Sbjct: 102 VLDEVDGISGKEDAGGVSELIKVIKKAKNPIILTANDAYA------PSIRSLLPYVEVIQ 155

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           ++    + + KV+ K+     + +D K    I Q    S       ++ ++ LALS
Sbjct: 156 LNPVHTNSVYKVLKKIAEKEGLDVDDKTLKMIAQH---SAGDLRSAINDLEALALS 208


>gi|46578418|ref|YP_009226.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447829|gb|AAS94485.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311232350|gb|ADP85204.1| Chromosomal replication initiator DnaA domain protein
           [Desulfovibrio vulgaris RCH1]
          Length = 437

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 30/227 (13%)

Query: 9   SFFVPDKQKNDQPKN--KEEQLFFS-----FPRCLGISRDDLLVHSAIEQAVRLI-DSWP 60
           +   P+  K           Q   +      P     + D  + +   +  +    ++  
Sbjct: 71  ALVFPEGIKTTDRSTVQPPSQPPLASESVACPFGAAFTFDAFITNRKNQFPLAAAREAAR 130

Query: 61  SWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----------------KSL 100
           +   R     +L G SG+GK+ L    +++  +   ++                    ++
Sbjct: 131 NGHQRTYNPFVLCGASGNGKTHLLRALANELAALYGTDAVFCGSAEELHDRYNTEERLAM 190

Query: 101 DSILIDTRKPVLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
              L   R  +L +   L    D   +L  + +  + +   +                 L
Sbjct: 191 RRTLCAHRALLLDDLHRLRALPDLREELTALFDHFYDHGKQMAFAYAGRLSDLDFLEAPL 250

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
            SRL+   +V +  PD D   + I    A   + + ++    + QR 
Sbjct: 251 RSRLELGLIVDLKEPDLDVRVRYIHARCAALSLQLAREHVLTLAQRC 297


>gi|308234059|ref|ZP_07664796.1| Chromosomal replication initiator DnaA [Atopobium vaginae DSM
           15829]
 gi|328943456|ref|ZP_08240921.1| DNA-directed DNA replication initiator protein DnaA [Atopobium
           vaginae DSM 15829]
 gi|327491425|gb|EGF23199.1| DNA-directed DNA replication initiator protein DnaA [Atopobium
           vaginae DSM 15829]
          Length = 567

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 54/181 (29%), Gaps = 33/181 (18%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP----SRVVILVGPSGSGKSCLANIWS----- 85
              ++ D  +     + A +  +             + + G SG GK+ L          
Sbjct: 211 DSKLTFDRFVQGEENQLAYQAANQVACGSCNQSYNPLFIYGKSGLGKTHLLRAIQNYIIK 270

Query: 86  -----------------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQ 125
                            + + + + S + ++  +        ++++DI            
Sbjct: 271 NDPTRTCAYKTATEFIEEYTLAWQKSPLERNALARSYKNIDVLIIDDIQNMRTAAGTIKF 330

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLP--DLC--SRLKAATVVKISLPDDDFLEKV 181
            F   NS+      ++  A   P    +     D    SR+ +   + I +P+ +    +
Sbjct: 331 FFDTFNSLISNGKQIVCAADRSPQELQLGESKFDERETSRMDSGITISIQVPNYELKLNL 390

Query: 182 I 182
           I
Sbjct: 391 I 391


>gi|90415910|ref|ZP_01223843.1| hypothetical protein GB2207_01717 [marine gamma proteobacterium
           HTCC2207]
 gi|90332284|gb|EAS47481.1| hypothetical protein GB2207_01717 [marine gamma proteobacterium
           HTCC2207]
          Length = 443

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 30/196 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G GK+ LA I +  + +   S  A       I        E  D L    T L
Sbjct: 51  MIFWGPPGVGKTTLAKIIAASADAHFESISAVLSGVKEIRASIAKATEQRD-LRGRKTIL 109

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D +++    T              L SR     V  +  
Sbjct: 110 FVDEVHRFNKSQQDAFLPFVEDGTVVFIGATTENPSFELNNA---LLSR---CRVYVLKS 163

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            D++ ++ VI +  +D       RQ+ +D +    +    +     A  L++  ++LA  
Sbjct: 164 LDNEQIKTVIQQALSDQQSGLGERQLQLDDEALDLLASAADGDARRALNLLEIANDLASE 223

Query: 226 RG--MGITRSLAAEVL 239
            G    I R +  +VL
Sbjct: 224 SGDLAAIDRRVLEQVL 239


>gi|156938087|ref|YP_001435883.1| replication factor C large subunit [Ignicoccus hospitalis KIN4/I]
 gi|166977383|sp|A8AC24|RFCL_IGNH4 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|156567071|gb|ABU82476.1| replication factor C large subunit [Ignicoccus hospitalis KIN4/I]
          Length = 476

 Score = 56.7 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 86/211 (40%), Gaps = 31/211 (14%)

Query: 55  LIDSWPSWP---SRVVILVGPSGSGKSCL----------------ANIWSDKSRSTRFSN 95
            I  W S      R  +L GP G GK+ L                A+ +  K    R + 
Sbjct: 31  WIKKWLSGTPPEKRAALLWGPPGVGKTSLVEAICNEFNLEKIEMNASDFRRKGDIERVAI 90

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            A +   +     + +LL+++D L    ++  +  I+  I +  + ++MTA      WG 
Sbjct: 91  AAATKKPLPPWKGRLILLDEVDGLSPRGDEGAVAAILELIKKTKNPIVMTANDP---WGT 147

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            L  +    + + +V+          + ++K+     ++ +K+   YI   +E++     
Sbjct: 148 HLRPIR---EESLLVEFKRIPKTKAREFLLKICEKEGVYCEKEAVDYI---IEKNKGDLR 201

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             ++ + ++A + G  +T  LA+ +L E  +
Sbjct: 202 ASINDLQSIAEAYG-KVTLDLASALLVERDR 231


>gi|120601058|ref|YP_965458.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris DP4]
 gi|120561287|gb|ABM27031.1| chromosomal replication initiator protein DnaA [Desulfovibrio
           vulgaris DP4]
          Length = 433

 Score = 56.7 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 71/225 (31%), Gaps = 30/225 (13%)

Query: 9   SFFVPDKQKNDQPKNKEEQLFFS-----FPRCLGISRDDLLVHSAIEQAVRLI-DSWPSW 62
           +   P+  K         QL  +      P     + D  + +   +  +    ++  + 
Sbjct: 71  ALVFPEGIKTTD--RSTVQLPLASESVACPFGAAFTFDAFITNRKNQFPLAAAREAARNG 128

Query: 63  PSRV---VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----------------KSLDS 102
             R     +L G SG+GK+ L    +++  +   ++                    ++  
Sbjct: 129 HQRTYNPFVLCGASGNGKTHLLRALANELAALYGTDAVFCGSAEELHDRYNTEERLAMRR 188

Query: 103 ILIDTRKPVLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
            L   R  +L +   L    D   +L  + +  + +   +                 L S
Sbjct: 189 TLCAHRALLLDDLHRLRALPDLREELTALFDHFYDHGKQMAFAYAGRLSDLDFLEAPLRS 248

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
           RL+   +V +  PD D   + I    A   + + ++    + QR 
Sbjct: 249 RLELGLIVDLKEPDLDVRVRYIHARCAALSLQLAREHVLTLAQRC 293


>gi|194333665|ref|YP_002015525.1| recombination factor protein RarA [Prosthecochloris aestuarii DSM
           271]
 gi|194311483|gb|ACF45878.1| AAA ATPase central domain protein [Prosthecochloris aestuarii DSM
           271]
          Length = 454

 Score = 56.7 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 21/148 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +I  GP GSGK+ LA I +     R  + S +   +  +     +    +    ++  
Sbjct: 63  PSLIFWGPPGSGKTTLAEICAHWLDFRFAKLSAVDAGVKDVRQALEQA---DKARRIEGQ 119

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            + LF    H  N           +    +L+ A T   S+ V    L SR++   V ++
Sbjct: 120 RSLLFIDEIHRFNKAQQDSLLHAIEQGIVVLIGATTENPSFEVNAA-LMSRMQ---VYRL 175

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLA 198
              D D L++V+++     Q+  D  + 
Sbjct: 176 KPLDRDELKQVVMRALKTDQLLSDAGIV 203


>gi|323704141|ref|ZP_08115720.1| AAA ATPase central domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536207|gb|EGB25979.1| AAA ATPase central domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 442

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 35/187 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-- 120
           R +I  GP G+GK+ LANI ++  KS   + + +   +  I     K ++ E  D L   
Sbjct: 53  RSLIFYGPPGTGKTTLANIIANTTKSSFEKLNAVTSGVTDI-----KKIVNESKDRLSMY 107

Query: 121 FNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
              T LF    H  N           +  + +L+ A T    + V  P L SR   + + 
Sbjct: 108 GKRTILFVDEIHRFNKSQQDALLPYVEDGTIILIGATTENPYFEVIRP-LVSR---SMIF 163

Query: 169 KISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           ++    DD + +++++   D  R +      +      +I+   +     A   ++ ++ 
Sbjct: 164 ELYPLSDDDIREIVLRALNDEKRGLGNEKIKVTDDALNHIIAYSD---GDARTALNAIEL 220

Query: 222 LALSRGM 228
             L+   
Sbjct: 221 AFLTTER 227


>gi|218530404|ref|YP_002421220.1| ATPase AAA [Methylobacterium chloromethanicum CM4]
 gi|218522707|gb|ACK83292.1| AAA ATPase central domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 462

 Score = 56.3 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 29/200 (14%)

Query: 67  VILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDL 118
           ++L GP G+GK+ +    +     ++     +   K LD  ++  R      V+LED+DL
Sbjct: 232 LLLYGPPGTGKTHIIRYIASNLPTRTAILITAEQVKMLDRYMLLARTLQPSIVVLEDVDL 291

Query: 119 LDFNDTQ--------LFH-IINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165
           +  +           L H ++N    +H     L +     P         L SR     
Sbjct: 292 VGRSREGMNSPKTEVLLHRLLNEMDGLHDDADVLFILTTNRPEEIEEA---LASRPGRVD 348

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLAL 224
             ++I+ PD       +V ++ D  I  ++     +V R E  S  F +++V ++    +
Sbjct: 349 EAIEIANPD-AACRTRLVSLYGDA-IDFEEGAIDAVVTRSEGASAAFIKEMVRRLAQATI 406

Query: 225 SRGM--GITRSLAAEVLKET 242
           + G    IT +    VL E 
Sbjct: 407 AAGSGNRITVATVESVLGEA 426


>gi|126466117|ref|YP_001041226.1| replication factor C large subunit [Staphylothermus marinus F1]
 gi|158513389|sp|A3DNV8|RFCL_STAMF RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|126014940|gb|ABN70318.1| replication factor C large subunit [Staphylothermus marinus F1]
          Length = 423

 Score = 56.3 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 74/209 (35%), Gaps = 37/209 (17%)

Query: 53  VRLIDSWPSW-PSRVV-ILVGPSGSGKSCLANIWSDKSRSTRFS---------------N 95
           ++ ++SW    PS+   +L GP+G GK+ L    +++                       
Sbjct: 30  IQWLESWLKGKPSKKAALLYGPAGCGKTSLVEAAANEYGLEIVEMNASDFRRRQDIERIA 89

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFND-----TQLFHIINSIHQYDSSLLMTARTFPVS 150
              +    L    K +LL+++D +           + H++         ++MTA      
Sbjct: 90  KTAAFMRSLFARGKIILLDEVDGISGTADRGAIDAILHLLEITR---YPVVMTANNP--- 143

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
           W   L  L     A+ ++      +  +  V+ ++    ++  +      I +R E  L 
Sbjct: 144 WDQKLKPLR---DASLMIAFKRLSERDVIIVLKRICQLEKLECEDAALREIARRSEGDLR 200

Query: 211 FAEKLVDKMDNLALSRG-MGITRSLAAEV 238
            A       D  A++ G   +T +   E+
Sbjct: 201 SAIN-----DLQAIAEGFGRVTLNWVREL 224


>gi|114766163|ref|ZP_01445167.1| transposion helper protein, ATP-binding protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541623|gb|EAU44665.1| transposion helper protein, ATP-binding protein [Roseovarius sp.
           HTCC2601]
          Length = 255

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 35/182 (19%)

Query: 18  NDQPKNKEEQLFFS---FPRCLGISRDDLLVHSAIEQAV--RLIDSWPSW--PSRVVILV 70
           +++ +    Q   +    P+   +   D L    + QA    L++   SW      ++  
Sbjct: 19  SEREQGPPTQRHLAAARLPQGKTLDAFDFLAVPTLSQARVRALVEGD-SWLQAGHNLLAF 77

Query: 71  GPSGSGKSCLANIWSDKSRSTRF------------------SNIAKSLDSILIDTRKPVL 112
           GP GSGK+ LA     +     +                   ++A + +   +D    ++
Sbjct: 78  GPPGSGKTHLAGAIGYELIQRGYRVLMARTSDLVQRLQVARQDLALTQEIAKLDKFDLLI 137

Query: 113 LEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           L+D+  +  +      LF +I S      S+++TA      W    PD     +A T+  
Sbjct: 138 LDDLSYVRKDQAETSALFELI-SARYERRSIMITANQPFSGWDAIFPD-----RAMTIAA 191

Query: 170 IS 171
           I 
Sbjct: 192 ID 193


>gi|270701248|ref|ZP_06223060.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae HK1212]
 gi|270315842|gb|EFA27945.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae HK1212]
          Length = 141

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 38/84 (45%)

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR        I  PD +    +++K   +  + + +++A +I QR+  ++   E  ++
Sbjct: 7   LKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALN 66

Query: 218 KMDNLALSRGMGITRSLAAEVLKE 241
           ++  +   +G  I      + LK+
Sbjct: 67  RVKAMQDFKGGDIDIDFVRDTLKD 90


>gi|91775481|ref|YP_545237.1| recombination factor protein RarA [Methylobacillus flagellatus KT]
 gi|91709468|gb|ABE49396.1| Recombination protein MgsA [Methylobacillus flagellatus KT]
          Length = 440

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 24/196 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA + ++ + +  F  ++  L  I          E         T
Sbjct: 49  PSMILWGPPGVGKTTLARLIANTADAE-FIPLSAVLAGIKDIREAVERAEHTLQQSGRRT 107

Query: 125 QLF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            LF    H  N   Q D+ L      L+T   A T   S+ V    L SR   A V  ++
Sbjct: 108 ILFVDEVHRFNK-GQQDAFLPFVESGLITFIGATTENPSFEVNSA-LLSR---AQVFVLN 162

Query: 172 LPDDDFLEKVIVKMFADRQIFID--KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
              +D L++++ +   + Q+ I    ++   ++   +         V+ + N AL+ G  
Sbjct: 163 ALSEDELKQLLERGKQEMQLDIPLTPEVVEQVLGYADGDARRLLNFVEGLFNAALTAG-- 220

Query: 230 ITRSLAAEVLKETQQC 245
           +T+ + AE L+ T   
Sbjct: 221 VTK-IDAEFLQSTMAS 235


>gi|301166665|emb|CBW26241.1| putative chromosomal replication initiator protein DnaA
           [Bacteriovorax marinus SJ]
          Length = 392

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 75/207 (36%), Gaps = 22/207 (10%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWPSRVVILV 70
            K+     +N++  L  +  R       + +   +  +A ++++   +  +   +++ + 
Sbjct: 55  AKRPKAITRNRKFSLPINVDRNKVFK--NFICGESNSRAYKVMESTLNSKNIDYQIIYIC 112

Query: 71  GPSGSGKSCLANIWSDK------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
             SG GKS L    ++                    N    +++  +D+   V ++D+D 
Sbjct: 113 SLSGLGKSHLLYATANALFEKTAKKICYFHGKEFIYNFDAQVEN--LDSIAAVFVDDLDE 170

Query: 119 L--DFNDTQLFHI-INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           +  D +    F    + + +    + +     P    +      +R+  A V KI+  D 
Sbjct: 171 ITYDIDLQDRFSRNFDLLKRSGVQIFLAGSILPKHMKMANAKYANRVGGALVEKINKIDR 230

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIV 202
           D   K++  +       +   ++  +V
Sbjct: 231 DLASKILDNLSTIHNYQLSPDVSDLLV 257


>gi|261403496|ref|YP_003247720.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
 gi|261370489|gb|ACX73238.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
          Length = 509

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 70/176 (39%), Gaps = 26/176 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPV 111
           ++LVGP G GK+ LA   ++          A                +  S +   +  +
Sbjct: 42  ILLVGPPGCGKTTLAYALANDYGFEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLI 101

Query: 112 LLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           +L+++D +   +    +  +I  I +  + +++TA     +       + S L    +++
Sbjct: 102 VLDEVDGISGKEDAGGVSELIKIIKKAKNPIILTANDAYATS------IRSLLPYVEIIQ 155

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           ++    + + KV+ K+     + +D K    I Q    S       ++ ++ LALS
Sbjct: 156 LNPVHTNSIYKVLKKIAQKEGLDVDDKTLKMIAQH---SAGDLRSAINDLEALALS 208


>gi|237733411|ref|ZP_04563892.1| chromosomal replication initiator protein dnaA [Mollicutes
           bacterium D7]
 gi|229383446|gb|EEO33537.1| chromosomal replication initiator protein dnaA [Coprobacillus sp.
           D7]
          Length = 248

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 26/139 (18%)

Query: 38  ISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--- 91
           ++ D+ +V S+   A     L+ + P      + +    G GK+ L N   + ++     
Sbjct: 110 LTFDNFVVGSSNRMAQNAALLVSTNPGSNFNPLFIYSNPGLGKTHLLNAIGNYAKEVNPA 169

Query: 92  --------------RFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDTQ---LFHIIN 131
                             +       + D  K    +L++DI  L   +      FHI N
Sbjct: 170 LRIRYITSKDFVDEVIGAMKGRDGDEIYDKYKNLDILLIDDIQFLFNKEKSSEIFFHIFN 229

Query: 132 SIHQYDSSLLMTARTFPVS 150
            +   +  +++T+   P  
Sbjct: 230 ELINNNKQIVITSDKMPEE 248


>gi|89274040|dbj|BAE80735.1| DnaA protein [Spiroplasma sp. Dhd]
 gi|172052696|dbj|BAC56124.2| DnaA protein [Spiroplasma sp. NSRO]
 gi|172052698|dbj|BAC56125.2| DnaA protein [Spiroplasma sp. NSRO-A]
 gi|183582236|dbj|BAG28287.1| DnaA protein [Spiroplasma sp. NSRO]
          Length = 157

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 28/155 (18%)

Query: 78  SCLANIWSDKSR-------------STRFSNIAKSL---DSILIDT-------RKPVLLE 114
           + L +   +K               +  F  IA  +      +I+           +L++
Sbjct: 1   THLLHAIENKVNEIYKTNTRVKYLKANEFGKIAMDILNQGHEIIEAFKTSYDIYDCLLID 60

Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DI LL   +      FHI NS  + +  +++T+  +P   G     + SR      + + 
Sbjct: 61  DIQLLAKRNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGLSIGLD 120

Query: 172 LPD-DDFLEKVIVKMFADRQIFI-DKKLAAYIVQR 204
            PD +  L+ +  K+     + +  ++   +I   
Sbjct: 121 SPDFETALKILEQKLKYQNNLALFSEESLEFIALN 155


>gi|42559517|sp|Q975D4|RFCL_SULTO RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
          Length = 440

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 84/217 (38%), Gaps = 40/217 (18%)

Query: 53  VRLIDSW----PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------------- 93
           V  I+SW    P+   + V+L GP G GK+ LA   +   +   F               
Sbjct: 28  VEWIESWLKGKPN--YKAVLLYGPPGVGKTTLAEALARDYKLELFEMNASDSRNLNDIRT 85

Query: 94  -SNIAKSLDSILIDTRKPVLLEDIDLL-----DFNDTQLFHIINSIHQYDSSLLMTARTF 147
            +  A    +I     K +LL+++D L           +  +IN        +++TA   
Sbjct: 86  MAERASITGTIFGIKGKLILLDEVDGLNARADAGAIDAILELINKTK---YPIILTANDP 142

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
              W   L  L     A  ++++       L++++ K+    +I  + +   +I   +E+
Sbjct: 143 ---WDPSLRPLR---NAVKMIELKRLTKYPLKRILKKICEAEKITCEDEALDFI---IEQ 193

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           S   A   ++ +  +A   G  +T  +A  +++   +
Sbjct: 194 SEGDARYAINMLQGVAEGYGR-VTLDMAKNLVRRKDR 229


>gi|330816938|ref|YP_004360643.1| AAA ATPase central domain protein [Burkholderia gladioli BSR3]
 gi|327369331|gb|AEA60687.1| AAA ATPase central domain protein [Burkholderia gladioli BSR3]
          Length = 467

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 77/185 (41%), Gaps = 27/185 (14%)

Query: 67  VILVGPSGSGKSC----LANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           ++L GP G+GK+     LA+     +     + + + + + ++   +     +++ED+DL
Sbjct: 244 ILLYGPPGTGKTHIIRYLASNLEHHTTLLITAGQVAALDEYVNLAKLLQPCLIVIEDVDL 303

Query: 119 LDFN--------DTQLFH-IINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +  +        +  + + ++N +           ++T    P      +     R+  A
Sbjct: 304 IGRDRTQMRETKEEAMLNRLLNEMDGLSPSAQLFFILTTNR-PDDIEDAIAGRPGRIDQA 362

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLAL 224
             ++I +PDD+   +++      R + I   +A   V +    S  F ++LV ++   ++
Sbjct: 363 --IEIPVPDDECRLRLLE--LYGRAMEIPTDVAEAAVTKTTGVSAAFIKELVRRLAQQSI 418

Query: 225 SRGMG 229
            RG  
Sbjct: 419 MRGSP 423


>gi|189500549|ref|YP_001960019.1| recombination factor protein RarA [Chlorobium phaeobacteroides BS1]
 gi|189495990|gb|ACE04538.1| AAA ATPase central domain protein [Chlorobium phaeobacteroides BS1]
          Length = 445

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 27/198 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I  GP GSGK+ LA I ++     RF +++     +    +   L      LD   T
Sbjct: 62  PSMIFWGPPGSGKTTLAEICANSLD-FRFDSLSAVDAGVREVRKSLELAASAQRLDGLRT 120

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +    +L+ A T   S+ V    L SR++   V  ++ 
Sbjct: 121 LLFIDEIHRFNKAQQDSLLHAIEQGVVVLIGATTENPSFEVNAA-LMSRMQ---VYVLNA 176

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLA----AYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            +D  L+ V+    A   +    ++     A+++Q    S   A K ++ +   ALS   
Sbjct: 177 LEDAALQAVVRCALAGDPLIAPYEVVIDDWAFLLQF---SAGDARKALNAV-EAALSMVD 232

Query: 229 GITRS--LAAEVLKETQQ 244
             T    L+  +L+   Q
Sbjct: 233 LSTVPVHLSRTLLERVLQ 250


>gi|148377269|ref|YP_001256145.1| chromosomal replication initiation protein [Mycoplasma agalactiae
           PG2]
 gi|291319938|ref|YP_003515196.1| chromosomal replication initiator protein DnaA [Mycoplasma
           agalactiae]
 gi|148291315|emb|CAL58698.1| Chromosomal replication initiator protein DnaA [Mycoplasma
           agalactiae PG2]
 gi|290752267|emb|CBH40238.1| Chromosomal replication initiator protein DnaA [Mycoplasma
           agalactiae]
          Length = 466

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 87/242 (35%), Gaps = 39/242 (16%)

Query: 40  RDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95
            ++ +  +  ++A+R+    ++         + + G SG GK+ L N   ++      S 
Sbjct: 126 FENYVEGNFNKEAIRIAKLIVEGEED--YNPIFIYGKSGIGKTHLLNAICNELLKKEVSV 183

Query: 96  IAKSLDSILIDTRKPVL-------------LEDIDLLDFND-------------TQLFHI 129
              + +S   D    +               ++ D++ F+D               +F+I
Sbjct: 184 KYINANSFTRDISYFLQENDQRKLKQIRNHFDNADIVMFDDFQSYGIGNKKATIELIFNI 243

Query: 130 INSIHQYDSSLLMTARTFPVSW-GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           ++S      + ++ +     S        L SRL     + I  P    L K++  M   
Sbjct: 244 LDSRINQKRTTIICSDRPIYSLQNSFDARLISRLSMGLQLSIDEPQKADLLKILDYMIDI 303

Query: 189 RQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM---DNLALSRGMGITRSLAAEVLKET 242
            ++     +     +IV+    S+      V+++   ++  +      T ++   +LK+ 
Sbjct: 304 NKMTPELWEDDAKNFIVKNYANSIRSLIGAVNRLRFYNSEIVKTNSRYTLAIVNSILKDI 363

Query: 243 QQ 244
           QQ
Sbjct: 364 QQ 365


>gi|29541759|gb|AAO90698.1| ATPase, AAA family [Coxiella burnetii RSA 493]
          Length = 427

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP GSGK+ LA I + K+ +     S +   +  I        ++E  +      T
Sbjct: 34  MILWGPPGSGKTTLAEIIAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 87

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ +    L SR +   V  +  
Sbjct: 88  ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 143

Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             +  L  ++    A  +R      + I + L   IVQ  +        L++ + + AL 
Sbjct: 144 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 203

Query: 226 RGMG 229
               
Sbjct: 204 ENGR 207


>gi|296108938|ref|YP_003615887.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
 gi|295433752|gb|ADG12923.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
          Length = 483

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 67/179 (37%), Gaps = 26/179 (14%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------------LIDTR 108
            + ++L GP G GK+ LA   ++          A    S                ++  R
Sbjct: 39  EKPILLYGPPGVGKTTLAYALANDYGFDVIELNASDRRSREEIRRIIGQSAVSKSILGNR 98

Query: 109 KPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
             ++L+++D +   +    +  +I    +  + ++MTA           P+L + L    
Sbjct: 99  FIIVLDEVDGISGKEDAGGVGELIKIAKESKNPIIMTANDAYS------PNLKNLLPHVE 152

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           ++++     + + K++  +     + +D K+   I      S       ++ +  LALS
Sbjct: 153 LIELKPLKVNEIYKILKAIAEKEGLDVDDKVLKVIASH---SAGDLRSAINDLQALALS 208


>gi|261856111|ref|YP_003263394.1| ATPase AAA [Halothiobacillus neapolitanus c2]
 gi|261836580|gb|ACX96347.1| AAA ATPase central domain protein [Halothiobacillus neapolitanus
           c2]
          Length = 433

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 73/195 (37%), Gaps = 25/195 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ LA + +    S+  +  A     K + + + +  + + L    LL  
Sbjct: 50  MILWGPPGVGKTTLARLMAKAFDSSFIALSAVFSGVKDIRAAMDEAERNLALGHPTLLFI 109

Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++    H  N           +     L+ A T   S+ V    L SR   A V  +   
Sbjct: 110 DEI---HRFNKAQQDALLPYAESGLVTLIGATTENPSFEVNSA-LLSR---AQVYVLKSL 162

Query: 174 DDDFLEKVIVKMFADRQ---IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-G 229
            DD L  ++     D+    +  D +    ++   +        L+++++  A +     
Sbjct: 163 SDDELR-LLFTRAQDKALGHLQFDPEAIDAVIGLADGDARRLLNLLEQLNTAASTSKRTQ 221

Query: 230 ITRSLAAEVLKETQQ 244
           IT +     L ++ +
Sbjct: 222 ITTAFIDNALNQSTR 236


>gi|167957055|ref|ZP_02544129.1| recombination factor protein RarA [candidate division TM7
           single-cell isolate TM7c]
          Length = 400

 Score = 55.2 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 29/182 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP GSGK+ LA I + ++ +     S +      I            +  R  + +
Sbjct: 43  LILWGPPGSGKTTLARIIAKETEANFMELSAVTSGKKEINNIIEIARQNWNLQLRTVLFV 102

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++I          F  HI     +     L+ A T   S+ +  P L SR+K   V+ + 
Sbjct: 103 DEIHRFSKVQQDAFLPHI-----ESGLITLIGATTENPSFEIITP-LLSRVK---VMTLK 153

Query: 172 LPDDDFLEKVIVKMFA--DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
             +D  +++++ K      +   +  +   Y+   +  S   A   +  ++ +       
Sbjct: 154 PLEDKDIQQILTKAIEKLAKSKLVTNESIEYLA-HI--SSGDARVALGNLELVLGINKGK 210

Query: 230 IT 231
           IT
Sbjct: 211 IT 212


>gi|21673587|ref|NP_661652.1| recombination factor protein RarA [Chlorobium tepidum TLS]
 gi|21646700|gb|AAM71994.1| ATPase, AAA family [Chlorobium tepidum TLS]
          Length = 451

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 29/191 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I  GP GSGK+ LA I   +S + RF  ++ +   +    R   L +    +D    
Sbjct: 64  PSMIFWGPPGSGKTTLAEI-CARSLNYRFEQLSATDAGVKDVRRVLELAQKSRSIDGRQM 122

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +    +L+ A T   S+ V    L SR++   V  ++ 
Sbjct: 123 LLFIDEIHRFNKAQQDTLLHAIEQGLIVLIGATTENPSFEVNRA-LLSRMQ---VYILNP 178

Query: 173 PDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
             +  + +V+ +        A   + +      +++         A K ++ +   ALS 
Sbjct: 179 LSEAEVRRVVERAIESDPQLAAAGVEMRD--MEFLLAYA---AGDARKALNAL-EAALSL 232

Query: 227 GMGITRSLAAE 237
               T  +  +
Sbjct: 233 APRGTAPVVID 243


>gi|161830329|ref|YP_001597052.1| recombination factor protein RarA [Coxiella burnetii RSA 331]
 gi|161762196|gb|ABX77838.1| ATPase, AAA family [Coxiella burnetii RSA 331]
          Length = 440

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP GSGK+ LA I + K+ +     S +   +  I        ++E  +      T
Sbjct: 47  MILWGPPGSGKTTLAEIIAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 100

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ +    L SR +   V  +  
Sbjct: 101 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 156

Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             +  L  ++    A  +R      + I + L   IVQ  +        L++ + + AL 
Sbjct: 157 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 216

Query: 226 RGMG 229
               
Sbjct: 217 ENGR 220


>gi|229220692|ref|NP_820184.4| recombination factor protein RarA [Coxiella burnetii RSA 493]
 gi|30581044|sp|P39918|RARA_COXBU RecName: Full=Replication-associated recombination protein A
          Length = 440

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP GSGK+ LA I + K+ +     S +   +  I        ++E  +      T
Sbjct: 47  MILWGPPGSGKTTLAEIIAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 100

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ +    L SR +   V  +  
Sbjct: 101 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 156

Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             +  L  ++    A  +R      + I + L   IVQ  +        L++ + + AL 
Sbjct: 157 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 216

Query: 226 RGMG 229
               
Sbjct: 217 ENGR 220


>gi|15828472|ref|NP_325832.1| chromosomal replication initiation protein [Mycoplasma pulmonis UAB
           CTIP]
 gi|14089414|emb|CAC13174.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycoplasma
           pulmonis]
          Length = 461

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 40/219 (18%)

Query: 37  GISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----- 87
             + D+ +     E A      +I++        V++ G SG GK+ L N   ++     
Sbjct: 119 KFTFDNFIQSKFNENAFLIGKEIIENP--GIYNPVLISGDSGLGKTHLLNAIGNEFLKKY 176

Query: 88  ----------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIIN------ 131
                     S   R      S ++I  + +K   L + DL+ F+D Q+F I N      
Sbjct: 177 PKSIVKFLTPSDFYRKIMPILSSNNINENAKKFKELTEADLVMFDDFQIFSIGNKRATLN 236

Query: 132 --------SIHQYDSSLLMTARTFPVSW-GVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
                    I     ++L T+         +    L +RL +   V+I  P+ + + K++
Sbjct: 237 FIFEILDKRIMNNKVTIL-TSDKDLKFMASLFEQRLYTRLSSGLSVEIEQPNKEDMLKIL 295

Query: 183 VKMFADRQIFI---DKKLAAYIVQRMERSLVFAEKLVDK 218
                 + +     +K    ++V+   +S+ F E  +DK
Sbjct: 296 KFQLKIKNLSPEKWEKDALDFMVRNFSKSIRFLEGALDK 334


>gi|269123583|ref|YP_003306160.1| AAA ATPase central domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314909|gb|ACZ01283.1| AAA ATPase central domain protein [Streptobacillus moniliformis DSM
           12112]
          Length = 395

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 17/144 (11%)

Query: 68  ILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           I  GPSG+GK+ LA I +DK        + I  S + I   + K     +  LL F++  
Sbjct: 46  IFFGPSGTGKTTLAKIIADKLGYDYVYLNAIKASKNDITQISLKAKNSVNKTLLFFDEI- 104

Query: 126 LFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
             H  N +         +  + +L+ A T    + +    L SR     + +    D++ 
Sbjct: 105 --HRFNKLQQDSLLEDLENGNIILIGATTENPYFSLNRA-LLSR---VLLFEFKKLDEED 158

Query: 178 LEKVIVKMFADRQIFIDKKLAAYI 201
           +  ++ K+  + Q+   + +  YI
Sbjct: 159 IFNILEKIAKEEQLEYKEDILKYI 182


>gi|222056545|ref|YP_002538907.1| ATPase AAA [Geobacter sp. FRC-32]
 gi|221565834|gb|ACM21806.1| AAA ATPase central domain protein [Geobacter sp. FRC-32]
          Length = 438

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP GSGK+ LA + +  + S     S I   +  I    ++    E++       T
Sbjct: 55  LIFWGPPGSGKTTLARVIAGATSSHFIFFSAILSGIKEIREIVKEA---EEVRKFQGRRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     ++ A T   S+ V  P L SR     V+ ++ 
Sbjct: 112 ILFVDEIHRFNKSQQDAFLPYVEKGVFTIIGATTENPSFEVIAP-LLSR---CKVLVLNT 167

Query: 173 PDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224
             ++ L+K+I     DR+       + I     +Y+    E++       ++ ++  A L
Sbjct: 168 LSEEELQKIIRNALTDRERGLGNLDLAITDDALSYMA---EQAGGDGRVALNTLETAARL 224

Query: 225 SRGMGITRSLAAEVLKE 241
           +    IT     E +++
Sbjct: 225 AENGTITIENVREAVQK 241


>gi|114766036|ref|ZP_01445046.1| transposase [Pelagibaca bermudensis HTCC2601]
 gi|114541671|gb|EAU44711.1| transposase [Roseovarius sp. HTCC2601]
          Length = 289

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 32/181 (17%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAV--RLIDSWPSW--PSRVVILVG 71
           ++  +P ++        P+   +   D L    + QA    L++   SW      ++  G
Sbjct: 54  EREQRPHSQRHLAAARLPQGKTLDAFDFLAVPTLSQARVRALVEGD-SWLQAGHNLLAFG 112

Query: 72  PSGSGKSCLANIWSDKSRSTRF------------------SNIAKSLDSILIDTRKPVLL 113
           P GSGK+ LA     +     +                   ++A + +   +D    ++L
Sbjct: 113 PPGSGKTHLAGAIGYELIQRGYRVLMARTSDLVQRLQVARQDLALTQEIAKLDKFDLLIL 172

Query: 114 EDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +D+  +  +      LF +I S      S+++TA      W    PD     +A T+  I
Sbjct: 173 DDLSYVRKDQAETSALFELI-SARYERRSIMITANQPFSGWDAIFPD-----RAMTIAAI 226

Query: 171 S 171
            
Sbjct: 227 D 227


>gi|85691113|ref|XP_965956.1| DNA helicase [Encephalitozoon cuniculi GB-M1]
 gi|19068523|emb|CAD24991.1| similarity to DNA HELICASE RUVB [Encephalitozoon cuniculi GB-M1]
          Length = 383

 Score = 55.2 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 38/188 (20%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-----------WSDKSRSTRFSNIAKS 99
            A+R +  +PS   R+++L GP G+GK+ LA++           ++  S S   S I  S
Sbjct: 27  DALRWLRDYPS-NGRILLLCGPPGTGKTALAHVLSSVFGMNLVEFNASSDSEYVSKILDS 85

Query: 100 LDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD--SSLLMTARTFPVSWGVCLPD 157
             +I    +  +L+++ID     +                  ++MT+             
Sbjct: 86  GGTING-KKNLILVDEIDGNPLIEVG-----RLASSTRLAHPVVMTSNEV---------- 129

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM-ERSLVFAEKLV 216
              RLK    ++I  P  D + + I ++  +  I +D  +    + RM E S      ++
Sbjct: 130 ---RLKDVYTLEIKRPGIDEIRRGIERICREEGIRVDNSV----LTRMVEDSGGDFRAII 182

Query: 217 DKMDNLAL 224
           + +   +L
Sbjct: 183 NHLQMCSL 190


>gi|289192746|ref|YP_003458687.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939196|gb|ADC69951.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
          Length = 515

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 68/178 (38%), Gaps = 30/178 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------------LIDTRKPV 111
           ++LVGP G GK+ LA   ++          A    S                +   +  +
Sbjct: 42  ILLVGPPGCGKTTLAYALANDYGFEVIELNASDKRSASVIKKVVGHAATSSSIFGKKFLI 101

Query: 112 LLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTART--FPVSWGVCLPDLCSRLKAATV 167
           +L+++D +   +    +  +I  I +  + +++TA     P    +        L    V
Sbjct: 102 ILDEVDGISGKEDAGGVSELIKVIKKAKNPIILTANDAYAPAIRNL--------LPYVEV 153

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           ++++    + + KV+ K+     + +D K    I Q    S       ++ ++ LALS
Sbjct: 154 IQLNPVHTNSVYKVLKKIAQKEGLDVDDKTLKMIAQH---SAGDLRSAINDLEALALS 208


>gi|224370722|ref|YP_002604886.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
 gi|223693439|gb|ACN16722.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
          Length = 451

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 24/180 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            IL GP G GK+ LA I + ++ S      A       I        E    +    T +
Sbjct: 57  TILWGPPGCGKTTLAGIIAKETSSHFMQLSAVLSGVKDIRAVIETAKEQ-RRIRGRRTLV 115

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T   S+ V +P L SR     V+ ++   
Sbjct: 116 FVDEIHRFNKAQQDAFLHHVETGAIVLVGATTENPSFEV-IPALVSR---CRVITLNRLG 171

Query: 175 DDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +  +  ++ +   D  R +         +   YI    +  +  A   ++ +   A +R 
Sbjct: 172 ERDIVTILERAATDPVRGLGSLGIIFSAEALNYIAATADGDVRAALATLETIGVYASARK 231


>gi|303326103|ref|ZP_07356546.1| putative ATPase involved in DNA replication initiation
           [Desulfovibrio sp. 3_1_syn3]
 gi|302864019|gb|EFL86950.1| putative ATPase involved in DNA replication initiation
           [Desulfovibrio sp. 3_1_syn3]
          Length = 457

 Score = 55.2 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 79/251 (31%), Gaps = 56/251 (22%)

Query: 33  PRCLGISRDDLLVHSAIE-------QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           P     + D+     +          A  + +S         +L G SG+GK+ L    +
Sbjct: 102 PDDARNAEDNFASFISNAKNAFPLAAAKEIAESDVGEAYNPFLLCGRSGTGKTHLLRALA 161

Query: 86  D----------KSRSTRFSNIAKSLDSILIDTRKPVLL------------EDIDLLDFND 123
                       SR     N A+         R+P L             +D+       
Sbjct: 162 GSFARRGSGKTASRRIICQNAARFCAEDTPWARRPELFWQQCDALLLDDLQDLAGQAAWQ 221

Query: 124 TQLFHIINSI-------------------HQYDSSLLMTARTFPVSWGVCLPDL----CS 160
            +L   +++                           ++ A   P      L DL     S
Sbjct: 222 QKLIACMDACPPAPRQNADVPTPVGMEYGLSDGPRQMVFAHAGPAQ---ALKDLDERLRS 278

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           RL++  VV++  PD D   + +  +  +R++ + +    Y+ QR  +     + L+ K+ 
Sbjct: 279 RLESGLVVELLEPDLDVRLRYLQALCKERRLNLGRDQLLYLAQRCAQ-FRLLQGLLLKVA 337

Query: 221 NLALSRGMGIT 231
             A   G  +T
Sbjct: 338 AFAAVHGRNLT 348


>gi|158522144|ref|YP_001530014.1| recombination factor protein RarA [Desulfococcus oleovorans Hxd3]
 gi|158510970|gb|ABW67937.1| AAA ATPase central domain protein [Desulfococcus oleovorans Hxd3]
          Length = 459

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 35/193 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---D 123
           +IL GP G GK+ LA I +  + +      A       I      ++E           D
Sbjct: 56  MILWGPPGCGKTTLARILAGMTGAAYVQISAVLSGVKEIRE----VVEAARRRRGEFQKD 111

Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N           +     L+ A T   S+ V +P L SR     ++ ++
Sbjct: 112 TILFVDEVHRFNKSQQDAFLPHVESGLVTLIGATTENPSFEV-IPALMSR---CRLIVLN 167

Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              ++ + +V+++  AD         + I+ +  A++    +         ++ ++  AL
Sbjct: 168 PVPEEAVRQVLLRALADTEKGLGKMGLEIEPEALAHLAALAD---GDVRTALNNLEAAAL 224

Query: 225 SR--GMGITRSLA 235
            R  G G+T +LA
Sbjct: 225 LRPAGTGVTITLA 237


>gi|194246591|ref|YP_002004230.1| Chromosomal replication initiator protein [Candidatus Phytoplasma
           mali]
 gi|254777910|sp|B3R0L6|DNAA_PHYMT RecName: Full=Chromosomal replication initiator protein DnaA
 gi|193806948|emb|CAP18380.1| Chromosomal replication initiator protein [Candidatus Phytoplasma
           mali]
          Length = 455

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 26/164 (15%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRSTRF 93
             +  + ++  + + A  +              + + G  G GK+ L +   +K      
Sbjct: 106 KYNFKNFIIGESNKFAFEMSKKISENKEIKINPLYIFGNVGLGKTHLLHSIGNKIIKNNK 165

Query: 94  SN--IAKSLDSILIDTRKPVLLE----------DIDLLDFNDTQ-----------LFHII 130
               +    D  + D    +  E          +ID+L  +D Q            F + 
Sbjct: 166 DKKVLYVKADEFIEDFINQLKEEKIENFKLKYRNIDVLLMDDIQIMSEAKRTQIEFFKLF 225

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           + ++  +  +++T+          +  L SR +A  ++ I  PD
Sbjct: 226 DYLYLNNKQIVITSDKNTSELKNIMSRLISRFEAGLIIDIKKPD 269


>gi|116874488|gb|ABK30887.1| DnaA [Mycoplasma imitans]
          Length = 461

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 41/208 (19%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRL--------IDSWPSWPSRVVILVGPSGSGKSCL 80
             S       +  + LV     +AV L        IDS  +W    +I+ G  G GKS L
Sbjct: 116 PLSRGIKEKYNFSNYLVFEFNREAVYLAKQIAEKTIDS--NW--NPIIIEGKPGYGKSHL 171

Query: 81  ANIWSDKSR--------STRFSNIAKSLDSILIDTRKPVLLE-------DIDLLDFND-- 123
               +++ +            S+   S     +    P  +E       D DLL  +D  
Sbjct: 172 LQAIANERQKLFPEEKICVLSSDDFGSEFLKSVIAPDPTHIESFKSKYKDYDLLMIDDVQ 231

Query: 124 ---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLP 173
                       F I NS+     ++++T           L   + SR +    V+I+ P
Sbjct: 232 IISNRPKTNETFFTIFNSLVDQKKTIVITLDCKIEEIQDKLNARMISRFQRGINVRINQP 291

Query: 174 DDDFLEKVIVKMFADRQIF--IDKKLAA 199
           + + + K+  + F +  +   +D  +  
Sbjct: 292 NKNEIIKIFKQKFKENNLEKYMDDHVIE 319


>gi|262196587|ref|YP_003267796.1| ATPase AAA [Haliangium ochraceum DSM 14365]
 gi|262079934|gb|ACY15903.1| AAA ATPase central domain protein [Haliangium ochraceum DSM 14365]
          Length = 463

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 44/217 (20%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKP------- 110
           P      +IL GP G+GK+ LA+I + ++ S     S +   +  +     +        
Sbjct: 47  PGAALPSLILWGPPGTGKTTLAHILATRAGSRLAAISAVTAGVREMRQLVSEAGDRRDQF 106

Query: 111 -----VLLEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
                + +++I        D  L H+     +  +  L+ A T   S+ V    L SR  
Sbjct: 107 GSRTVLFIDEIHRFSKAQQDALLPHV-----EAGTVTLIGATTENPSFHVNAA-LLSR-- 158

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLV 216
              V+++    D+ L  +  +  +DR+       + +  ++   +V +   S   A +++
Sbjct: 159 -CRVLRLGALSDEELGALARRALSDRERGLGRAAVSVSDEVLTDLVAQ---SGGDARRML 214

Query: 217 DKMDNL-ALSRGMGIT--------RSLAAEVLKETQQ 244
           + ++   +L RG            R+L  E ++E  Q
Sbjct: 215 NALEVAVSLVRGGEGEGEDEDEAPRALGREAIEEALQ 251


>gi|332796205|ref|YP_004457705.1| AAA ATPase central domain-containing protein [Acidianus hospitalis
           W1]
 gi|332693940|gb|AEE93407.1| AAA ATPase central domain protein [Acidianus hospitalis W1]
          Length = 450

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 32/211 (15%)

Query: 54  RLIDSWPSW-PSRV-VILVGPSGSGKSCLANIWSDKSRSTR----------------FSN 95
           R I+SW S  P    ++L GP G+GK+ LA   +                        + 
Sbjct: 29  RWIESWLSGKPENKALLLYGPPGTGKTTLAQALAHDYGLELLEMNASDSRNLEAIKNIAQ 88

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            A    S+     K + L+++D ++       +  I   + +    +L+ A      W  
Sbjct: 89  RAAVSGSLFGTKGKLIFLDEVDGINARQDMGAIPAIAELVQKTRYPVLLAANDP---WDP 145

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            L +L      A +V++       L K++ K+    ++  D      I   +E S   A 
Sbjct: 146 SLRELR---NLAKLVEVKKLGKYALRKILGKICTSEKLQCDDDALDEI---IEISDGDAR 199

Query: 214 KLVDKMDNLALSRG-MGITRSLAAEVLKETQ 243
             ++ +   A + G   +T     E  +  +
Sbjct: 200 YAINLL--EATAEGFKKVTVESVKEFARRKE 228


>gi|170290624|ref|YP_001737440.1| DNA replication ATPase HolB large subunit [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174704|gb|ACB07757.1| ATPase involved in DNA replication HolB, large subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 382

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 67/173 (38%), Gaps = 31/173 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------------ILIDTRKPV 111
           +++VGP G+GK+  A+  +++         A  L                 +L   R+ +
Sbjct: 10  LLIVGPPGTGKTSAAHAIANELNYDAIEVNASDLRDRTHLQYIVESSGAVSLLSGKRRLI 69

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC-----SRLKAAT 166
           +L++ID L      +  ++  +      ++MTA          + +L      SR++  +
Sbjct: 70  ILDEIDALPGEGHAIASLVKELISKGIPIVMTANDPYERHLYEIRNLSMMVKFSRVRWQS 129

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           VV +       L+ +  K      + + +++   I +  +  L  A   ++ +
Sbjct: 130 VVSV-------LKDICRKE----GLSVPEEVLNKIAKSCQGDLRAAINDLEGL 171


>gi|118473523|ref|YP_887339.1| recombination factor protein RarA [Mycobacterium smegmatis str. MC2
           155]
 gi|118174810|gb|ABK75706.1| AAA ATPase, central region [Mycobacterium smegmatis str. MC2 155]
          Length = 447

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 31/195 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
           VIL GP G+GK+ LA++ S  +          +   K + +++   R+  +        +
Sbjct: 68  VILYGPPGTGKTTLASLISQATGRRFEALSALTAGVKEVRAVIDTARRAAVHGQQTVLFI 127

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 128 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 179

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
                +E V+ +   D R +     +  +    IVQ    S   A + +  ++  A   G
Sbjct: 180 LTPADIEAVLRRAITDERGLGGRVEVTDEAVDLIVQ---LSAGDARRALTALEVAA-EPG 235

Query: 228 MGITRSLAAEVLKET 242
             +T     + L + 
Sbjct: 236 ERVTVETIEQSLDKA 250


>gi|296120806|ref|YP_003628584.1| ATPase AAA [Planctomyces limnophilus DSM 3776]
 gi|296013146|gb|ADG66385.1| AAA ATPase central domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 432

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 80/203 (39%), Gaps = 42/203 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121
           V+  GP G GK+ LA + +  S+    +  A +     L   L ++R+ +          
Sbjct: 55  VVFYGPPGVGKTTLAELIAKSSKRRFIALNAAATGVKELREALDESRERL------KSSG 108

Query: 122 NDTQLF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N   Q             L+ A T    + +  P L SR   + + +
Sbjct: 109 TKTLLFVDELHHFNKQQQNVLLPDVEQGVVSLVAATTANPFFALIAP-LLSR---SQIFE 164

Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRME----RSLVFAEKLVDK 218
           +     + ++ V+ +  +D  R      + + +++  ++    +    R+L+  E  V+ 
Sbjct: 165 LKPLSTEEIKAVLRQALSDETRGYGQKNLKVPEEVFDFLAASSDGDARRALLALEIAVES 224

Query: 219 MDNLALSRGMGITRSLAAEVLKE 241
           +D+  L     +T  +A E L++
Sbjct: 225 LDSRVLE----LTLEIAQESLQK 243


>gi|258546040|ref|ZP_05706274.1| replication-associated recombination protein A [Cardiobacterium
           hominis ATCC 15826]
 gi|258518697|gb|EEV87556.1| replication-associated recombination protein A [Cardiobacterium
           hominis ATCC 15826]
          Length = 457

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 23/177 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           ++L GP G GK+ LA + +D   +                  +A++     I  +  + +
Sbjct: 70  MLLWGPPGCGKTTLALLLADAFDARYIRLSAVFSGVKEVREAVAQAQQERAIGRKTILFI 129

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  + +L+ A T   ++ +    L SRL+   V  +   
Sbjct: 130 DEIHRFNKAQQDAFLPY---VEDGTLILIGATTENPAFNLNNA-LLSRLR---VFHLKPL 182

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            +D L + + +  A   +  D+   A +  +       A K +  ++  AL R  GI
Sbjct: 183 SEDELAEKLRRGLAALGLEADEPAIATLAYQAG---GDARKAIGWLEEWALLRRQGI 236


>gi|119355865|ref|YP_910509.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355927|ref|YP_910571.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119356118|ref|YP_910762.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119356169|ref|YP_910813.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119356478|ref|YP_911122.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119356956|ref|YP_911600.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119357093|ref|YP_911737.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119357158|ref|YP_911802.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119357259|ref|YP_911903.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119357358|ref|YP_912002.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119357549|ref|YP_912193.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119357834|ref|YP_912478.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119357903|ref|YP_912547.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119357958|ref|YP_912602.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119357990|ref|YP_912634.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119358079|ref|YP_912723.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119358091|ref|YP_912735.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119358151|ref|YP_912795.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119358335|ref|YP_912979.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119358416|ref|YP_913060.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119358423|ref|YP_913067.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353214|gb|ABL64085.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353276|gb|ABL64147.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353467|gb|ABL64338.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353518|gb|ABL64389.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353827|gb|ABL64698.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354305|gb|ABL65176.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354442|gb|ABL65313.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354507|gb|ABL65378.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354608|gb|ABL65479.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354707|gb|ABL65578.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354898|gb|ABL65769.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355183|gb|ABL66054.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355252|gb|ABL66123.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355307|gb|ABL66178.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355339|gb|ABL66210.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355428|gb|ABL66299.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355440|gb|ABL66311.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355500|gb|ABL66371.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355684|gb|ABL66555.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355765|gb|ABL66636.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355772|gb|ABL66643.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 278

 Score = 54.8 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GPSG+GKS LA     ++    +  + +++D ++                  + + 
Sbjct: 104 LILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIRFKEITAAAAREYKRLLSA 163

Query: 109 KPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             ++++DI +     +    LF ++N +H+  +S ++T    P  W   L D
Sbjct: 164 HLLVIDDIMMFPLEKSVAVGLFQLVNQLHE-QTSFIITTNKSPKEWAEMLGD 214


>gi|330822346|ref|YP_004362567.1| AAA ATPase central domain protein [Burkholderia gladioli BSR3]
 gi|327374183|gb|AEA65537.1| AAA ATPase central domain protein [Burkholderia gladioli BSR3]
          Length = 483

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 85/199 (42%), Gaps = 27/199 (13%)

Query: 67  VILVGPSGSGKSC----LANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           ++L GP G+GK+     LA+     +     + + + +A  +    +     V++ED+DL
Sbjct: 258 ILLYGPPGTGKTHTIKYLASNLPGHTTLLISADQVALLANYMQLARLLQPSMVVIEDVDL 317

Query: 119 LDFN--------DTQLFH-IINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           +  +        +  L + ++N    +HQ    L +     P      L     R+  A 
Sbjct: 318 IGRHRNEMRGPAEESLLNRLLNEMDGLHQDAEILFVLTTNRPEEIEEALSARPGRVDQA- 376

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLALS 225
            +++  PD D   +++    A  Q+ I   + A +V++ E  S  F ++LV ++   +++
Sbjct: 377 -IEVPAPDADCRTRLLQLYGA--QMSISSDVIAILVEQTEGVSAAFIKELVRRLAQQSIA 433

Query: 226 RG--MGITRSLAAEVLKET 242
           R     I    A  VL++ 
Sbjct: 434 RKAQGKINMQDAENVLRDM 452


>gi|189425566|ref|YP_001952743.1| recombination factor protein RarA [Geobacter lovleyi SZ]
 gi|189421825|gb|ACD96223.1| AAA ATPase central domain protein [Geobacter lovleyi SZ]
          Length = 435

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 40/211 (18%)

Query: 55  LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSILIDTRKPVL 112
           +I++        +I  GP G GK+ LA+I + +  SR   FS I   +  I        +
Sbjct: 44  MIEADQ---LPSMIFWGPPGCGKTTLAHIIAHETSSRFVFFSAIMAGVKEIRE------I 94

Query: 113 LEDIDLLDFNDTQ--LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDL 158
            +D +      T+  LF    H  N           +     ++ A T   S+ V  P L
Sbjct: 95  FKDAEAYAAGGTRTILFVDEIHRFNKAQQDAFLPAVEKGLVTIIGATTENPSFEVIAP-L 153

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVF 211
            SR     V+++   + D L  ++ K   D        Q+ I+ +   ++    E +   
Sbjct: 154 LSR---CRVLRLKQLEADELATLLQKTLQDTEKGLGGLQLAIEDEALTFL---SEAAQGD 207

Query: 212 AEKLVDKMDNLA-LSRGMGITRSLAAEVLKE 241
             K ++ ++  A L++   I+  +A E +++
Sbjct: 208 GRKALNTLEVAAGLAQDGLISLEIAQEAMQQ 238


>gi|193212966|ref|YP_001998919.1| recombination factor protein RarA [Chlorobaculum parvum NCIB 8327]
 gi|193086443|gb|ACF11719.1| AAA ATPase central domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 452

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 31/200 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I  GP GSGK+ LA I +      RF  ++ +   +    R   + +    +D    
Sbjct: 65  PSMIFWGPPGSGKTTLAEICAGSLN-YRFEQLSATDAGVKDVRRVLEVAQKSRSIDGRQM 123

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +    +L+ A T   S+ V    L SR++   V  ++ 
Sbjct: 124 LLFIDEIHRFNKAQQDTLLHAIEQGLIVLIGATTENPSFEVNRA-LLSRMQ---VYILNP 179

Query: 173 PDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
             +  +++V+ +        A   + +      +++         A K ++ +   ALS 
Sbjct: 180 LSEAEVQRVVERAIGSDPQLAAAGVEVRD--MEFLLAYA---AGDARKALNAL-EAALSL 233

Query: 227 GMGITRSLA--AEVLKETQQ 244
               T  +    ++L++  Q
Sbjct: 234 APLGTAPMVIDRKLLEQALQ 253


>gi|227889971|ref|ZP_04007776.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849415|gb|EEJ59501.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
          Length = 426

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVL--LEDIDL 118
           ++L GP G+GK+ LA I + +        +    N AK +  I     +  +  +++I  
Sbjct: 44  LLLWGPPGTGKTSLAQIIAREYDYPLATFNASIDNKAKLMQIINTYPYQSFVLLIDEIHR 103

Query: 119 --LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                 D  L ++     +    LL+ A T      +  P + SR     + +    DD 
Sbjct: 104 MTTTLQDYLLPYL-----ESGKILLIGATTENPIMSIV-PAVRSR---CQIFEFETLDDK 154

Query: 177 FLEKVIVKM----FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            + +V+V+     F   +  IDK+    I +  +  L  A  L++ +       G  I+ 
Sbjct: 155 DISEVLVRALKEVFHLDEKQIDKEAINIIARSADGDLRVALNLLETIQA---VNGEEISV 211

Query: 233 SLAAEVLKETQ 243
               E LK   
Sbjct: 212 KNVKEFLKGQH 222


>gi|152993934|ref|YP_001359655.1| recombination factor protein RarA [Sulfurovum sp. NBC37-1]
 gi|151425795|dbj|BAF73298.1| ATPase, AAA family [Sulfurovum sp. NBC37-1]
          Length = 393

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------DSILIDTRKPVLLE 114
             + L GP G GK+ LA I + +     +   A +L          +      +  + ++
Sbjct: 39  PHIFLYGPPGCGKTTLARIIATQLGRPFYEMNATTLKIDDLRKIFKEYANALQKPLIFID 98

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           ++  L  N  ++        + +++L++ A T    + +    + SR   + + ++    
Sbjct: 99  EVHRLSKNQQEVLLPF---MENNAALVIGASTENPYYSLTAA-MRSR---SHLFELEALK 151

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              ++  + K+ A + + +++    Y+V     S      +++ +++  +     +T   
Sbjct: 152 QKEMQDYLAKIIALQAMDVEEDAVEYLVFS---SGGDVRAMLNLLESAQMVA-TPVTLET 207

Query: 235 AAEV 238
             ++
Sbjct: 208 LKQI 211


>gi|310823298|ref|YP_003955656.1| ATPase [Stigmatella aurantiaca DW4/3-1]
 gi|309396370|gb|ADO73829.1| AAA ATPase [Stigmatella aurantiaca DW4/3-1]
          Length = 443

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 25/194 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G+GK+ LA + +  + +  F +++  L  +          ++   L    T
Sbjct: 53  PSLILWGPPGTGKTTLARVIAQATGA-SFESLSAVLSGVKDIRETVARAQERWRLHRQRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ V    L SR   A VV +  
Sbjct: 112 LLFIDEIHRFNKSQQDALLPHVEKGTVTLIGATTENPSFEVNAA-LLSR---ARVVTLRG 167

Query: 173 PDDDFLEKVIVKM-FADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            +++ L  V+ +   A + +     +D +   +I Q        A K +  ++  A   G
Sbjct: 168 LEEEELVGVLRRAVVAPKGLGGKVQVDDEALQFIAQAAG---GDARKALTALEVAASYGG 224

Query: 228 MGITRSLAAEVLKE 241
             + R  A E L++
Sbjct: 225 SQVNRQAAEEALQQ 238


>gi|291534006|emb|CBL07119.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Megamonas hypermegale ART12/1]
          Length = 372

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 40/192 (20%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL------ 118
           +IL GP G+GK+ LA + +   KS  +R + ++  +  +        ++E  D       
Sbjct: 1   MILYGPPGTGKTTLAKMIAGMTKSEFSRLNAVSAGISDVRK------IIEKADENRRYYR 54

Query: 119 ----LDFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
               +  ++    H  N           +    +L+ A T    + V    L SR++   
Sbjct: 55  KRTIIFLDEI---HRFNKAQQDVLLPYVEDGRIILIGATTENPYFEVNHA-LLSRVR--- 107

Query: 167 VVKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           VVK+ L D+  L  ++     D  R +       D ++ + I Q        A  +++++
Sbjct: 108 VVKLELLDEQNLIDILKVALEDKVRGLGKYEFKYDDEVLSIIAQYAGGDARVALNILEQV 167

Query: 220 DNLALSRGMGIT 231
            ++AL +   I 
Sbjct: 168 GDVALEQNHNIN 179


>gi|119356882|ref|YP_911526.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354231|gb|ABL65102.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 210

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDI 116
           +IL+GPSG+GKS LA     ++    +  + +++D ++             R+   L   
Sbjct: 36  LILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDELIQTIRFKDVTTAAAREYKRLVHA 95

Query: 117 DLLDFNDT-----------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            LL  +D             LF +IN +H+  +S ++T    P  W   L D
Sbjct: 96  HLLVIDDIMMFPLEKSVAVGLFQLINQLHE-QTSFIITTNKNPKEWAEMLGD 146


>gi|298243589|ref|ZP_06967396.1| IstB domain protein ATP-binding protein [Ktedonobacter racemifer
           DSM 44963]
 gi|297556643|gb|EFH90507.1| IstB domain protein ATP-binding protein [Ktedonobacter racemifer
           DSM 44963]
          Length = 587

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 40/172 (23%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----------------- 87
           V  A   A+        W    ++LVGP+G GK+ L    + +                 
Sbjct: 426 VSEAYGAALEFARDPQGW----LLLVGPNGCGKTHLGLAIAHQRLEAGDVVLFSVVPDLL 481

Query: 88  --SRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQLFHIINSIHQYDSSL 140
              R+    N  +  D +    R+   ++L+D+     +     +LF ++N  +      
Sbjct: 482 DHLRAAFAPNATEVYDQLFSKMREAGVLILDDLGAQQSSQWAKEKLFQLLNYRYNMSMPT 541

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
           ++TA   P         + SRL           D   + +V +    D ++ 
Sbjct: 542 VITAN--PKGLQDIDERIRSRLG----------DISLVRRVNMNQAHDYRVV 581


>gi|15920689|ref|NP_376358.1| replication factor C large subunit [Sulfolobus tokodaii str. 7]
 gi|15621472|dbj|BAB65467.1| 413aa long hypothetical replication factor C large subunit
           [Sulfolobus tokodaii str. 7]
          Length = 413

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 83/216 (38%), Gaps = 40/216 (18%)

Query: 54  RLIDSW----PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF---------------- 93
             I+SW    P+   + V+L GP G GK+ LA   +   +   F                
Sbjct: 2   EWIESWLKGKPN--YKAVLLYGPPGVGKTTLAEALARDYKLELFEMNASDSRNLNDIRTM 59

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLL-----DFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           +  A    +I     K +LL+++D L           +  +IN        +++TA    
Sbjct: 60  AERASITGTIFGIKGKLILLDEVDGLNARADAGAIDAILELINKTK---YPIILTANDP- 115

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
             W   L  L     A  ++++       L++++ K+    +I  + +   +I   +E+S
Sbjct: 116 --WDPSLRPLR---NAVKMIELKRLTKYPLKRILKKICEAEKITCEDEALDFI---IEQS 167

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
              A   ++ +  +A   G  +T  +A  +++   +
Sbjct: 168 EGDARYAINMLQGVAEGYGR-VTLDMAKNLVRRKDR 202


>gi|325968176|ref|YP_004244368.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707379|gb|ADY00866.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 435

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 76/200 (38%), Gaps = 30/200 (15%)

Query: 53  VRLIDSWPSW-PSRVVI-LVGPSGSGKSCLANIWSDKSRS----------------TRFS 94
           +  I+SW    PSR  + LVG  G+GK+ LA   +++                    +  
Sbjct: 30  LDWINSWEKGKPSRKAVMLVGSPGTGKTTLAYALANEKGYEVLELNASDVRTGERIRQII 89

Query: 95  NIAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWG 152
             +  + S+     + +L +++D L+  +    L  I+  I +    ++MTA      W 
Sbjct: 90  GGSMKMGSLFGFRGRIILFDEVDGLNVREDRGGLAAIVELIRESTWPIIMTANNP---WD 146

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
               +L      A V+++    ++ +  ++ ++  +  I  ++     I    E S    
Sbjct: 147 PKFRELR---DEAEVIQLKPLRENDILTILRRICNNEGIKCEEDALKLIA---EASGGDV 200

Query: 213 EKLVDKMDNLALSRGMGITR 232
              ++ +   A      +T+
Sbjct: 201 RAAINDL-QAAAEGKKVLTK 219


>gi|268611321|ref|ZP_06145048.1| chromosomal replication initiator protein DnaA [Ruminococcus
           flavefaciens FD-1]
          Length = 338

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 25/143 (17%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLA----NIWSDKSRST 91
             + D   V  A   A      +        + + G + +GK+ L     N     S   
Sbjct: 9   KYTFDSFAVTDANRTAFEKAKLFAENADSKPLAIFGATATGKTHLLYAVKNAIEQNSPEL 68

Query: 92  RF-----SNIAKSLDSILIDTRKP------------VLLEDIDLLDFNDT---QLFHIIN 131
                  +++  +L +I+                  +L++DI  L   +    +L  I N
Sbjct: 69  HVIFTTTADMVSTLTNIISSGGTAEQFREKYMQADVLLVDDIQALAGKEAIQNELILIFN 128

Query: 132 SIHQYDSSLLMTARTFPVSWGVC 154
           S ++     +MT+      +G+ 
Sbjct: 129 SFYESGKRFMMTSAQKEAGYGIQ 151


>gi|119356612|ref|YP_911256.1| IstB ATP binding domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353961|gb|ABL64832.1| IstB domain protein ATP-binding protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 175

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 22/114 (19%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDT 107
            + L+GPSG+GKS LA     ++ +  +  + +++D ++                  I  
Sbjct: 10  KLTLIGPSGTGKSYLAGGLCHEALNLGYHELFRTMDELIHTIRLKEVTTAAAREFKRIMH 69

Query: 108 RKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
            +  ++EDI +L   +T    LF ++N +H+  +S ++T    P  W   L  L
Sbjct: 70  ARLPVIEDIMMLPLENTVAVGLFQLVNQLHE-QASFIITTNKSPKDWAEMLDRL 122


>gi|148927772|ref|ZP_01811204.1| AAA ATPase, central domain protein [candidate division TM7
           genomosp. GTL1]
 gi|147886884|gb|EDK72422.1| AAA ATPase, central domain protein [candidate division TM7
           genomosp. GTL1]
          Length = 390

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 34/191 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP GSGK+ LA I + +  +      A +         K  + + ++    N    
Sbjct: 43  LILWGPPGSGKTTLARIIAKEVEADFIELSAVT-------AGKADITQVVERARQNRNLK 95

Query: 126 ----LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
               LF    H  N           +     L+ A T   S+ V  P L SR   + V+ 
Sbjct: 96  MRTILFVDEIHRFNKAQQDAFLPHVESGLITLIGATTENPSFEVITP-LLSR---SRVLV 151

Query: 170 ISLPDDDFLEKVI--VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +   D + +  +I            +  K   Y+    E S   A   +  +  LAL   
Sbjct: 152 LEPLDKEDITTIIKKSLKKLKATKRVTPKALEYLA---ELSSGDARIALGNL-ELALDMA 207

Query: 228 MGITRSLAAEV 238
             IT  +  + 
Sbjct: 208 EKITPEIVKKA 218


>gi|163851595|ref|YP_001639638.1| ATPase central domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163663200|gb|ABY30567.1| AAA ATPase central domain protein [Methylobacterium extorquens PA1]
          Length = 462

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 79/203 (38%), Gaps = 29/203 (14%)

Query: 67  VILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDL 118
           ++L GP G+GK+ +    +    +++     +     LD  ++  R      V+LED+DL
Sbjct: 232 LLLYGPPGTGKTHVIRYIASNLPERTTVLITAEEVVYLDRYMLLARTLQPSIVVLEDVDL 291

Query: 119 LDFN---------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165
           +  +         +  L  ++N    +H     L +     P         L SR     
Sbjct: 292 VGRSREGMNSPKTEVLLNRLLNEMDGLHDDADVLFILTTNRPEEIEEA---LASRPGRVD 348

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNL-- 222
             ++I+ PD       +V ++ D  I  ++     +V R E  S  F +++V ++     
Sbjct: 349 EAIEIANPD-AACRTRLVSLYGDA-IDFEEGAIDAVVTRSEGASAAFIKEMVRRLAQATI 406

Query: 223 ALSRGMGITRSLAAEVLKETQQC 245
           A+  G  IT +    VL E    
Sbjct: 407 AVGTGNRITVATVESVLGEAVGS 429


>gi|261380370|ref|ZP_05984943.1| replication-associated recombination protein A [Neisseria subflava
           NJ9703]
 gi|284796894|gb|EFC52241.1| replication-associated recombination protein A [Neisseria subflava
           NJ9703]
          Length = 435

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 26/195 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIEKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFA--DRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             D L+K+I K+ A  + Q   I+      +V   +        L++++   A +R +  
Sbjct: 163 SSDDLKKLITKVLALPEYQDFTIEADAQELLVNTADGDARRLLNLIEQLLRAANTRRLK- 221

Query: 231 TRSLAAEVLKETQQC 245
             +L AE L ++   
Sbjct: 222 --TLTAEFLADSLGA 234


>gi|240138763|ref|YP_002963235.1| hypothetical protein MexAM1_META1p2163 [Methylobacterium extorquens
           AM1]
 gi|240008732|gb|ACS39958.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 462

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 29/203 (14%)

Query: 67  VILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDL 118
           ++L GP G+GK+ +    +    +++     +     LD  ++  R      V+LED+DL
Sbjct: 232 LLLYGPPGTGKTHVIRYIASNLPERTTVLITAEEVVYLDRYMLLARTLQPSIVVLEDVDL 291

Query: 119 LDFN---------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165
           +  +         +  L  ++N    +H     L +     P         L SR     
Sbjct: 292 VGRSREGMNSPKTEVLLNRLLNEMDGLHDDADVLFILTTNRPEEIEEA---LASRPGRVD 348

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLAL 224
             ++I+ PD       +V ++ D  I   +     +V R E  S  F +++V ++    +
Sbjct: 349 EAIEIANPD-AACRTRLVSLYGDA-IDFKEGAIDAVVTRSEGASAAFIKEMVRRLAQATI 406

Query: 225 SRGM--GITRSLAAEVLKETQQC 245
           + G    IT +    VL E    
Sbjct: 407 AAGTGNRITVATVESVLGEAVGS 429


>gi|124027779|ref|YP_001013099.1| replication factor C large subunit [Hyperthermus butylicus DSM
           5456]
 gi|150415659|sp|A2BL93|RFCL_HYPBU RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|123978473|gb|ABM80754.1| Replication factor C large subunit [Hyperthermus butylicus DSM
           5456]
          Length = 484

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 39/215 (18%)

Query: 55  LIDSWPSW--PSRVVIL-VGPSGSGKSCL----------------ANIWSDKSRSTRFSN 95
            + SW     P R   L  GP+G GK+ L                A+ +  KS   R + 
Sbjct: 32  WLRSWLQGRIPERKAALFYGPAGVGKTSLVEAAANEYGLELIEMNASDFRRKSDIERIAK 91

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFND-----TQLFHIINSIHQYDSSLLMTARTFPVS 150
           IA +  S+    RK +LL+++D +           +  +IN        ++MTA      
Sbjct: 92  IAATQFSLFGRKRKIILLDEVDGISGTADRGGLDAILELINITK---HPIVMTANDP--- 145

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
           W   L  L     A+ +V      + ++ +V+ ++ A   I  + +    I QR E  L 
Sbjct: 146 WDQKLKPLR---DASLMVPFYRLSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLR 202

Query: 211 FAEKLVDKMDNLALSRGMGITR-SLAAEVLKETQQ 244
            A       D  A++ G G+ R  L   +L    +
Sbjct: 203 SAIN-----DLQAIAEGYGVVRVDLVRALLATRDR 232


>gi|15897671|ref|NP_342276.1| replication factor C large subunit [Sulfolobus solfataricus P2]
 gi|284174996|ref|ZP_06388965.1| replication factor C large subunit [Sulfolobus solfataricus 98/2]
 gi|42559540|sp|Q9UXF6|RFCL_SULSO RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit;
           AltName: Full=SsoRFC large subunit
 gi|6015707|emb|CAB57534.1| replication factor C, large subunit [Sulfolobus solfataricus P2]
 gi|13813942|gb|AAK41066.1| Activator 1, replication factor C (RFC) large subunit (rfcL)
           [Sulfolobus solfataricus P2]
 gi|261602439|gb|ACX92042.1| AAA ATPase central domain protein [Sulfolobus solfataricus 98/2]
          Length = 405

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 81/211 (38%), Gaps = 30/211 (14%)

Query: 54  RLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSRSTR----------------FSN 95
             I+SW +  S V  V+L GP G GK+ LA   +                        + 
Sbjct: 28  EWIESWLNGNSNVKAVLLHGPPGVGKTVLAEALAHDYNFELLEMNASDSRKLQDIKSIAE 87

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            A    SI     K +LL+++D ++  +    +  I+  I +    ++MTA      W  
Sbjct: 88  KAAVYGSIFGTKGKLILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDP---WNP 144

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            L +L      A ++++S      L +++ K+    +I  D +   YI+   E    +A 
Sbjct: 145 GLRELR---NKAKMIELSKLGKYPLRRILKKICQAEKIICDDEALNYIIDSSEGDARYAI 201

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            ++  +          +T +L   + K  ++
Sbjct: 202 NILQGIGE----GYGKVTLNLVESLAKRKER 228


>gi|328954615|ref|YP_004371948.1| chromosomal replication initiator protein DnaA [Coriobacterium
           glomerans PW2]
 gi|328454939|gb|AEB06133.1| chromosomal replication initiator protein DnaA [Coriobacterium
           glomerans PW2]
          Length = 591

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 64/191 (33%), Gaps = 34/191 (17%)

Query: 31  SFPRCL---GISRDDLLVHSAIEQAVRLIDSWPSWPSR-----VVILVGPSGSGKSCLAN 82
            FP        + ++ +     +QA +    + ++         + + G SG GK+ L  
Sbjct: 217 DFPSVPVNSKFTFENFVYGEENKQAYQSSLRFAAFAEEPGSYTSLFIYGNSGLGKTHLLL 276

Query: 83  IWSD------KSRSTRFSNIAKSLDSILID----------------TRKPVLLEDIDLLD 120
              +           +++N    +D  + +                    ++++DI  + 
Sbjct: 277 AIENYLAETKPYMRVKYANSQAYIDDFINEVAIQKTDGHAILRDYHAADILIIDDIQNII 336

Query: 121 FNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
                    F +++   + +  +++ +   P   G+    L SR     +  +S P  + 
Sbjct: 337 GKTASIDYFFRLMDEFIRDNKKVVIASDRAPKKLGMD-ERLTSRFNGGMLCLVSEPGFEM 395

Query: 178 LEKVIVKMFAD 188
              ++ + + +
Sbjct: 396 KYAILKRYYEN 406


>gi|86169601|gb|ABC87040.1| chromosomal replication initiation protein [Fructobacillus
           fructosus KCTC 3544]
          Length = 290

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 11/138 (7%)

Query: 111 VLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAAT 166
           +L++DI           + F+  N++ + +  ++MT+  +P      L D L SR +   
Sbjct: 54  LLVDDIQFWSGKPQVQEEFFNTFNALTKANKQIVMTSDRYPNDIP-DLQDRLKSRFEQGI 112

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLA 223
              I  PD      ++  M    ++ I   +   I + ++   R+L  A    +      
Sbjct: 113 TSDIQKPDVQTKVGILRNMQEKNELDIPNDVLQLIGESIDGNVRTLEGAFHSFEAKIRF- 171

Query: 224 LSRGMGITRSLAAEVLKE 241
             +    T   A  +L+E
Sbjct: 172 --QNKPATIETAKIILEE 187


>gi|14209506|dbj|BAB55906.1| putative transposase-associated ATP-binding protein [Bradyrhizobium
           elkanii]
          Length = 281

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 27/151 (17%)

Query: 32  FPRCLGISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---- 83
            P        D     ++  A   A+   D W +     ++L GP G GKS LA      
Sbjct: 83  LPTGKTFDSFDFEAVPMISKAQMTALAAGDGWLN-KGANLLLFGPPGGGKSHLAAAIGLA 141

Query: 84  -----WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---L 126
                W        D  +  + +    +L+  +  +D    V+L+D+  +  +  +   L
Sbjct: 142 LIENGWRVLFTRTTDLVQKLQVARRELNLEGAINRLDRFDLVILDDLAYVTKDQAETSVL 201

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           F +I S      SLL+TA      W    PD
Sbjct: 202 FELI-SARYERRSLLITANQPFGEWNKVFPD 231


>gi|116748300|ref|YP_844987.1| recombination factor protein RarA [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697364|gb|ABK16552.1| Recombination protein MgsA [Syntrophobacter fumaroxidans MPOB]
          Length = 451

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 21/137 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            +L GP GSGK+ LA I + ++++     S +      I     +    + +       T
Sbjct: 58  FVLWGPPGSGKTTLAAIIAAQTQTHMIHLSAVMAGTREIREAVTEA---KQVWAKQKLRT 114

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H +N           +  + LL+ A T   S+ +  P L SR   A V+ ++ 
Sbjct: 115 WLFMDEIHRLNKAQQDTLLPHIENGTLLLLGATTENPSFEIIRP-LLSR---ARVLVLNH 170

Query: 173 PDDDFLEKVIVKMFADR 189
             D  L  ++ +   DR
Sbjct: 171 LSDAELGNIVHRALEDR 187


>gi|154706961|ref|YP_001424634.1| recombination factor protein RarA [Coxiella burnetii Dugway
           5J108-111]
 gi|154356247|gb|ABS77709.1| ATPase, AAA family [Coxiella burnetii Dugway 5J108-111]
          Length = 440

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP GSGK+ LA I + K+ +     S +   +  I        ++E  +      T
Sbjct: 47  MILWGPPGSGKTTLAEIMAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 100

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ +    L SR +   V  +  
Sbjct: 101 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 156

Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             +  L  ++    A  +R      + I + L   IVQ  +        L++ + + AL 
Sbjct: 157 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 216

Query: 226 RGMG 229
               
Sbjct: 217 ENGR 220


>gi|254561363|ref|YP_003068458.1| hypothetical protein METDI2945 [Methylobacterium extorquens DM4]
 gi|254268641|emb|CAX24600.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 462

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 29/203 (14%)

Query: 67  VILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDL 118
           ++L GP G+GK+ +    +    +++     +     LD  ++  R      V+LED+DL
Sbjct: 232 LLLYGPPGTGKTHVIRYIASNLPERTTVLITAEEVVYLDRYMLLARTLQPSIVVLEDVDL 291

Query: 119 LDFN---------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165
           +  +         +  L  ++N    +H     L +     P         L SR     
Sbjct: 292 VGRSREGMNSPKTEVLLNRLLNEMDGLHDDADVLFILTTNRPEEIEEA---LASRPGRVD 348

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLAL 224
             ++I+ PD       +V ++ +  I  ++     IV R E  S  F +++V ++    +
Sbjct: 349 EAIEIANPD-AACRTRLVSLYGE-SIDFEEGAIDAIVTRSEGASAAFVKEMVRRLAQATI 406

Query: 225 SRGM--GITRSLAAEVLKETQQC 245
           + G    IT +    VL E    
Sbjct: 407 AAGTGNRITVATVESVLGEAVGS 429


>gi|212218615|ref|YP_002305402.1| recombination factor protein RarA [Coxiella burnetii CbuK_Q154]
 gi|212012877|gb|ACJ20257.1| ATPase, AAA family [Coxiella burnetii CbuK_Q154]
          Length = 427

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP GSGK+ LA I + K+ +     S +   +  I        ++E  +      T
Sbjct: 34  MILWGPPGSGKTTLAEIMAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 87

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ +    L SR +   V  +  
Sbjct: 88  ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 143

Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             +  L  ++    A  +R      + I + L   IVQ  +        L++ + + AL 
Sbjct: 144 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 203

Query: 226 RGMG 229
               
Sbjct: 204 ENGR 207


>gi|15806898|ref|NP_295621.1| recombination factor protein RarA [Deinococcus radiodurans R1]
 gi|6459682|gb|AAF11452.1|AE002029_1 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 434

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 23/174 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA + + +  +   +  A S  + + D R  V   + +      T
Sbjct: 45  GSLILWGPPGVGKTTLARLLAGEVGAHFIALSAVS--AGVKDVRDAVAEAEREQARGRRT 102

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     L+ A T   S+ V  P L SR +   V++   
Sbjct: 103 VLFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSRAR-TLVLEALS 160

Query: 173 PDDDFLEKVIVKMFAD-RQI--FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           P+D     ++ +  +D R +     +  A  ++ R+      A + +  ++  A
Sbjct: 161 PEDVL--ALLRRALSDERGLPGVEAEDSALELLARLAE--GDARRALSTLEVAA 210


>gi|167645615|ref|YP_001683278.1| recombination factor protein RarA [Caulobacter sp. K31]
 gi|167348045|gb|ABZ70780.1| AAA ATPase central domain protein [Caulobacter sp. K31]
          Length = 433

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 24/146 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ +A + + K+    F  I+     +  D +K      +       T L
Sbjct: 55  MILWGPPGTGKTTIARLLA-KAGGYEFQQISAVFSGVA-DLKKAFEQARMRRQAGQSTLL 112

Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q            +L+      P          L SR     V  +  
Sbjct: 113 FVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGA---LLSR---CQVFVLKR 166

Query: 173 PDDDFLEKVIVK--MFADRQIFIDKK 196
            DD+ LE +++K     +R++ +D  
Sbjct: 167 LDDEALEALLIKAEAAENRKLPLDPD 192


>gi|227827645|ref|YP_002829425.1| replication factor C large subunit [Sulfolobus islandicus M.14.25]
 gi|229584849|ref|YP_002843351.1| replication factor C large subunit [Sulfolobus islandicus M.16.27]
 gi|259585252|sp|C3N5N1|RFCL_SULIA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|259585254|sp|C3MVD2|RFCL_SULIM RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|227459441|gb|ACP38127.1| AAA ATPase central domain protein [Sulfolobus islandicus M.14.25]
 gi|228019899|gb|ACP55306.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27]
          Length = 405

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 73/187 (39%), Gaps = 31/187 (16%)

Query: 54  RLIDSWPSW-PSRVVIL-VGPSGSGKSCLANIWSDKSRSTR----------------FSN 95
             I+SW +  P+   +L  GP G GK+ LA   +                        + 
Sbjct: 28  EWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKSVAE 87

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            A    SI     K +LL+++D ++  +    +  I+  I +    L+MTA      W  
Sbjct: 88  KASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTKYPLIMTANDP---WNP 144

Query: 154 CLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L +L ++ K   + K+   P    L +++ K+    +I  D +   YI   ++ S   A
Sbjct: 145 ALRELRNKTKMVGLNKLGKYP----LRRLLKKICQAEKIICDDEALNYI---IDTSEGDA 197

Query: 213 EKLVDKM 219
              ++ +
Sbjct: 198 RYAINML 204


>gi|229816226|ref|ZP_04446536.1| hypothetical protein COLINT_03276 [Collinsella intestinalis DSM
           13280]
 gi|229808234|gb|EEP44026.1| hypothetical protein COLINT_03276 [Collinsella intestinalis DSM
           13280]
          Length = 588

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 65/196 (33%), Gaps = 32/196 (16%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIWSD 86
                  +    +       A      + ++         + + G SG GK+ L     +
Sbjct: 220 LDINAKYTFASFVAGDENRHAFNSAMRFAAYAEEPQQCPSLFIYGNSGLGKTHLLFAIRN 279

Query: 87  ------KSRSTRFSNIAKSLDS---ILIDTRKP-------------VLLEDIDLLDFNDT 124
                      +++N    LD     L   R P             ++++D+  +     
Sbjct: 280 YLAKEKPYIRVKYANSQAYLDDYMNELGAQRGPGNLIMREYRDADILIIDDVQNIVGKQA 339

Query: 125 QL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
            +   F +++S  +    + + +   P    +    L SR  +  +  +S P  + ++ V
Sbjct: 340 SVEFFFQLVDSFIREGKKIALASDRAPKDLAMD-ERLTSRFSSGMLCLVSEPGFE-MKYV 397

Query: 182 IVKMFADRQIFIDKKL 197
           I+K + +  I  D+ L
Sbjct: 398 ILKRYYESIIQQDEDL 413


>gi|319947814|ref|ZP_08022008.1| recombination factor protein RarA [Dietzia cinnamea P4]
 gi|319438538|gb|EFV93464.1| recombination factor protein RarA [Dietzia cinnamea P4]
          Length = 417

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 33/169 (19%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDT--------RKP 110
              VIL GP G+GK+ LAN+ +  S          S   K + +++ D         R  
Sbjct: 35  GSSVILYGPPGTGKTTLANLVASTSGRHFVALSALSAGVKDVRAVIDDARTRQVHGQRTV 94

Query: 111 VLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           + ++++     +    L     +  +    LL+ A T    + V  P L SR   + + +
Sbjct: 95  LFIDEVHRFSKSQQDALL----AAVENGIVLLVAATTENPHFSVIAP-LLSR---SLIAE 146

Query: 170 ISLPDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +   DD  +  V+ +  +D R           +  R+E +   AE +V 
Sbjct: 147 LQGLDDAGVAAVLRRAVSDERG----------LAGRVELTDAAAEDIVR 185


>gi|115380346|ref|ZP_01467349.1| AAA ATPase, central region [Stigmatella aurantiaca DW4/3-1]
 gi|115362645|gb|EAU61877.1| AAA ATPase, central region [Stigmatella aurantiaca DW4/3-1]
          Length = 284

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 25/194 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G+GK+ LA + +  + +  F +++  L  +          ++   L    T
Sbjct: 53  PSLILWGPPGTGKTTLARVIAQATGA-SFESLSAVLSGVKDIRETVARAQERWRLHRQRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ V    L SR   A VV +  
Sbjct: 112 LLFIDEIHRFNKSQQDALLPHVEKGTVTLIGATTENPSFEVNAA-LLSR---ARVVTLRG 167

Query: 173 PDDDFLEKVIVKM-FADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            +++ L  V+ +   A + +     +D +   +I Q        A K +  ++  A   G
Sbjct: 168 LEEEELVGVLRRAVVAPKGLGGKVQVDDEALQFIAQAAG---GDARKALTALEVAASYGG 224

Query: 228 MGITRSLAAEVLKE 241
             + R  A E L++
Sbjct: 225 SQVNRQAAEEALQQ 238


>gi|89894586|ref|YP_518073.1| hypothetical protein DSY1840 [Desulfitobacterium hafniense Y51]
 gi|89334034|dbj|BAE83629.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 329

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 72/189 (38%), Gaps = 32/189 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDK---------------SRSTRFSNIAKSLDSILIDTRKP- 110
            +L GP G GKS L      +                ++  F+    +L    +  R P 
Sbjct: 27  TLLYGPEGVGKSTLLVKCCQRLKEKKTILYIDAQDFVKNYAFAAQEGTLSQFRLRLRTPG 86

Query: 111 -VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            ++++ I++L     +  + +H   ++ Q +  ++   R  P   G     L SRL+   
Sbjct: 87  VLIMDHIEVLKGKTRSIEEFYHTYEALFQRNGRIICGFRGDPSQLGFLGEKLSSRLRGGL 146

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD--------- 217
           VV I  P  + +   + +M   + + ++  +   ++     +   A+ L++         
Sbjct: 147 VVPILQPTPEDMLNYLRQMAYGKFLIVEDLVLE-LMAEEAANFPKAQSLMNGFIQFANRT 205

Query: 218 --KMDNLAL 224
              +D+ AL
Sbjct: 206 DSALDHGAL 214


>gi|241760045|ref|ZP_04758143.1| recombination factor protein RarA [Neisseria flavescens SK114]
 gi|241319499|gb|EER55929.1| recombination factor protein RarA [Neisseria flavescens SK114]
          Length = 435

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 26/195 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRTTIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFA--DRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             D L+K+I K+ A  + Q   ID      +V   +        L++++   A +R +  
Sbjct: 163 SSDDLKKLIAKVLALPEYQEFTIDVDAQELLVNTADGDARRLLNLIEQLLRAADTRRLK- 221

Query: 231 TRSLAAEVLKETQQC 245
             +L AE L ++   
Sbjct: 222 --TLTAEFLADSLGA 234


>gi|164685937|ref|ZP_01946864.2| ATPase, AAA family [Coxiella burnetii 'MSU Goat Q177']
 gi|165919023|ref|ZP_02219109.1| ATPase, AAA family [Coxiella burnetii RSA 334]
 gi|164601458|gb|EAX32492.2| ATPase, AAA family [Coxiella burnetii 'MSU Goat Q177']
 gi|165917278|gb|EDR35882.1| ATPase, AAA family [Coxiella burnetii RSA 334]
          Length = 440

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP GSGK+ LA I + K+ +     S +   +  I        ++E  +      T
Sbjct: 47  MILWGPPGSGKTTLAEIMAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 100

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ +    L SR +   V  +  
Sbjct: 101 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 156

Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             +  L  ++    A  +R      + I + L   IVQ  +        L++ + + AL 
Sbjct: 157 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 216

Query: 226 RGMG 229
               
Sbjct: 217 ENGR 220


>gi|212212420|ref|YP_002303356.1| recombination factor protein RarA [Coxiella burnetii CbuG_Q212]
 gi|212010830|gb|ACJ18211.1| ATPase, AAA family [Coxiella burnetii CbuG_Q212]
          Length = 427

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP GSGK+ LA I + K+ +     S +   +  I        ++E  +      T
Sbjct: 34  MILWGPPGSGKTTLAEIMAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 87

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ +    L SR +   V  +  
Sbjct: 88  ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 143

Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             +  L  ++    A  +R      + I + L   IVQ  +        L++ + + AL 
Sbjct: 144 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 203

Query: 226 RGMG 229
               
Sbjct: 204 ENGR 207


>gi|152989818|ref|YP_001355540.1| recombination factor protein RarA [Nitratiruptor sp. SB155-2]
 gi|151421679|dbj|BAF69183.1| ATPase, AAA family [Nitratiruptor sp. SB155-2]
          Length = 391

 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 76/179 (42%), Gaps = 21/179 (11%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT----------RKPVLLEDIDLL 119
            GP G+GK+ LA I + +  S  F   A SL    I            +  + ++++  L
Sbjct: 40  FGPPGTGKTTLARIVAKEYESDFFELNATSLKIEEIRKIVHRYKGSFIKPLLFIDEVHRL 99

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
             N  ++   I    + + +L++ A T    + +    + SR   + + +    +++ L 
Sbjct: 100 SKNQQEVLLPI---MEKEEALILGASTENPFFSLTAA-IRSR---SMLFEFRPLNEEDLN 152

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           +++ ++  + +  ID++   YI+ R+  S   A  L+  +   +L     IT  L   +
Sbjct: 153 QLVHRVCQNEECSIDEEAKEYII-RI--SQGDARNLLKFLTKASLIE-SHITLQLLRSL 207


>gi|256811408|ref|YP_003128777.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
 gi|256794608|gb|ACV25277.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
          Length = 488

 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 70/177 (39%), Gaps = 28/177 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPV 111
           ++LVGP G GK+ LA   ++          A                +  S +   +  +
Sbjct: 42  ILLVGPPGCGKTTLAYALANDYGFEVIELNASDKRNASSIKKVVGHAATSSSVFGKKFLI 101

Query: 112 LLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVV 168
           +L+++D +   +    +  +I  I +  + +++TA      S    LP          V+
Sbjct: 102 VLDEVDGISGKEDAGGVSELIKVIKKAKNPIILTANDAYATSIRNLLP-------YVEVI 154

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           +++    + + KV+ K+     + +D K+   I Q    S       ++ ++ LALS
Sbjct: 155 QLNPVHTNSVYKVLKKIAEKEGLNVDDKILKMIAQH---SAGDLRSAINDLEALALS 208


>gi|15827173|ref|NP_301436.1| recombination factor protein RarA [Mycobacterium leprae TN]
 gi|221229651|ref|YP_002503067.1| recombination factor protein RarA [Mycobacterium leprae Br4923]
 gi|13092721|emb|CAC30018.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932758|emb|CAR70603.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 473

 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
            IL GP G GK+ LA + S  +          S   K + ++L   R  +L        +
Sbjct: 90  AILHGPPGCGKTTLAALISQATGHRFEALSALSAGVKDVRAVLKIARSALLSGKRTVLFI 149

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     S  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 150 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 201

Query: 173 PDDDFLEKVIVKMFAD-R----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMD--NLALS 225
            + D +  V+ +   D R    QI +  +    ++ R+  +   A +++  ++    A+ 
Sbjct: 202 LNADDIRAVVQRAVDDPRGLGGQIAVAPEAVD-LLVRL--AAGDARRVLTALEVAAEAVQ 258

Query: 226 RGMGITRSLAAEVLKET 242
            G  +T +   + L   
Sbjct: 259 TGDELTVATIEQSLDNA 275


>gi|329667375|gb|AEB93323.1| recombination factor protein [Lactobacillus johnsonii DPC 6026]
          Length = 420

 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVL--LEDIDL 118
           ++L GP G+GK+ LA I + +        +    N AK +  I     +  +  +++I  
Sbjct: 44  LLLWGPPGTGKTSLAQIIAREYDYPLATFNASVDNKAKLMQIINTYPYQSFVLLIDEIHR 103

Query: 119 --LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                 D  L ++ N        LL+ A T      +  P + SR     + +    DD 
Sbjct: 104 MTTTLQDYLLPYLEN-----GQILLIGATTENPIMSIV-PAVRSR---CQIFEFEPLDDK 154

Query: 177 FLEKVIVKM----FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            + +V+V+     F   +  IDK+    I +  +  L  A  L++ +       G  I+ 
Sbjct: 155 DISEVLVRALKEVFHLDEKQIDKEAINIIARSADGDLRVALNLLETIHA---VNGEEISV 211

Query: 233 SLAAEVLKETQ 243
               E +K   
Sbjct: 212 KNVKEFVKGQH 222


>gi|304316707|ref|YP_003851852.1| ATPase AAA [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778209|gb|ADL68768.1| AAA ATPase central domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 444

 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 71/176 (40%), Gaps = 32/176 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-- 120
           R +I  GP G+GK+ LANI ++  KS   + + +   +  I     K ++ E  D L   
Sbjct: 53  RSLIFYGPPGTGKTTLANIIANTTKSSFEKLNAVTSGVTDI-----KKIVNESKDRLSMY 107

Query: 121 FNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
              T LF    H  N           +  + +L+ A T    + V  P L SR   + + 
Sbjct: 108 GKRTILFIDEIHRFNKSQQDALLPYVEDGTIILIGATTENPYFEVIRP-LVSR---SMIF 163

Query: 169 KISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++    ++ +++++++   D  R +      I      +I+   +     A   ++
Sbjct: 164 ELYPLSNEDIKEIVLRALNDEKRGLGNEKIKITDDALNHIITYSDGDARAALNAIE 219


>gi|254775881|ref|ZP_05217397.1| recombination factor protein RarA [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 391

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 31/195 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
            IL GP GSGK+ LA + S  +          S   K + +++   R  +L        +
Sbjct: 9   AILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRGEQTVLFI 68

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     S  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 69  DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 120

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
              D +  V+ +   D R +     +  +    ++ R+  +   A + +  ++  A   G
Sbjct: 121 LSADDIRTVVRRAIDDPRGLGGRVPVAPEAVD-LLVRL--AAGDARRALTALEVAA-EAG 176

Query: 228 MGITRSLAAEVLKET 242
             +T     + L E 
Sbjct: 177 ESVTVQTVEQSLDEA 191


>gi|94265038|ref|ZP_01288806.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
 gi|93454471|gb|EAT04759.1| AAA ATPase, central region [delta proteobacterium MLMS-1]
          Length = 441

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 74/190 (38%), Gaps = 33/190 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK--------------SLDSILIDTRKP 110
             ++L GP GSGK+ LA + + +S +      A                L+         
Sbjct: 45  PSLLLWGPPGSGKTTLARLLARQSGADFIFFSAVLSGVKEIRAIVERSRLNLEKSGRGSV 104

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + +++I   +      F       +     L+ A T   S+ V  P L SR     V+ +
Sbjct: 105 LFVDEIHRFNKGQQDAFLPH---VESGLLTLIGATTENPSFQVIAP-LLSR---CRVLVL 157

Query: 171 SLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRME---RSLVFAEKLVDKM- 219
           +  ++D L +++    +DRQ       + I  + AA+++   +   R+L+ + ++   + 
Sbjct: 158 NALEEDELGEILAAALSDRQQGLGESELSISDEAAAHLIAVADGDARNLLGSLEIAAALV 217

Query: 220 -DNLALSRGM 228
            D  A   G 
Sbjct: 218 ADKKAADTGR 227


>gi|328954253|ref|YP_004371587.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454577|gb|AEB10406.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 433

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 27/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121
           +I  GP G GK+ LA I +  +RS   S  A     K +  ++    K  L +   ++  
Sbjct: 48  LIFWGPPGCGKTTLAQIIAGVTRSHFVSLSAVLSGVKDIREVVAQAEKKRLQQQRTIVLI 107

Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++    H  N           +  + +L+ A T    + V  P L SR   A V      
Sbjct: 108 DEI---HRFNKAQQDALLPHVEAGTLILIGATTENPYFEVIAP-LLSR---ARVFVFQPL 160

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQ 203
            ++ +  ++ +   DRQ         +      Y+ +
Sbjct: 161 TEEQIRLLLDRALRDRQRGLGTFPASLTDDAWRYLAR 197


>gi|189345671|ref|YP_001942200.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM
           245]
 gi|189346250|ref|YP_001942779.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM
           245]
 gi|189339818|gb|ACD89221.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM
           245]
 gi|189340397|gb|ACD89800.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM
           245]
          Length = 270

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GPSG+GKS LA     ++    +  + +++D ++                  +   
Sbjct: 104 LILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDELIQTIRFKDVTTAAAREYKRLVHA 163

Query: 109 KPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             ++++DI +     +    LF +IN +H+  +S ++T    P  W   L D
Sbjct: 164 HLLVIDDIMMFPIEKSVAVGLFQLINQLHE-QTSFIITTNKNPKEWAEMLGD 214


>gi|151940918|gb|EDN59300.1| ATPase family protein [Saccharomyces cerevisiae YJM789]
          Length = 780

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 35/173 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P R ++L GP G+GK+ L  + ++ S +   +    S+ S  +   +  L          
Sbjct: 278 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 337

Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                 +++ID +  N                L  +++ +      +++ A   P S   
Sbjct: 338 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNS--- 394

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             P L    +    V+I +PD D    ++ K F+     +  +D +   YI  
Sbjct: 395 VDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 447


>gi|323303728|gb|EGA57514.1| Afg2p [Saccharomyces cerevisiae FostersB]
 gi|323307896|gb|EGA61156.1| Afg2p [Saccharomyces cerevisiae FostersO]
          Length = 780

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 35/173 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P R ++L GP G+GK+ L  + ++ S +   +    S+ S  +   +  L          
Sbjct: 278 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 337

Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                 +++ID +  N                L  +++ +      +++ A   P S   
Sbjct: 338 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNS--- 394

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             P L    +    V+I +PD D    ++ K F+     +  +D +   YI  
Sbjct: 395 VDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 447


>gi|189345776|ref|YP_001942305.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM
           245]
 gi|189339923|gb|ACD89326.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM
           245]
          Length = 257

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDI 116
           +IL+GPSG+GKS LA     ++    +  + +++D ++             R+   L   
Sbjct: 83  LILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDELIQTIRFKEVTTAAAREYKRLVHA 142

Query: 117 DLLDFNDT-----------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            LL  +D             LF +IN +H+  +S ++T    P  W   L D
Sbjct: 143 HLLVIDDIMMFPLEKSVAVGLFQLINQLHE-KTSFIITTNKNPKEWAEMLGD 193


>gi|148657906|ref|YP_001278111.1| recombination factor protein RarA [Roseiflexus sp. RS-1]
 gi|148570016|gb|ABQ92161.1| AAA ATPase, central domain protein [Roseiflexus sp. RS-1]
          Length = 505

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 28/158 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP GSGK+ LA I +D + +        S  S  +   + V+ E  D L     + 
Sbjct: 60  IILWGPPGSGKTTLARIIADTTNAHF---EQLSAVSAGVADLRRVVKEAQDRLGMFQQRT 116

Query: 126 -LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ V  P L SR   A V  +  
Sbjct: 117 IVFIDEIHRFNKAQQDAILPYVEDGTIILIGATTENPSFEVN-PALRSR---ARVFVLEA 172

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQ 203
             DD +  ++ +  +D  R +      +      Y++ 
Sbjct: 173 LTDDQIGVIVDRALSDTERGLGELNVLLAADARGYLIN 210


>gi|6323429|ref|NP_013501.1| Afg2p [Saccharomyces cerevisiae S288c]
 gi|416590|sp|P32794|AFG2_YEAST RecName: Full=ATPase family gene 2 protein
 gi|295573|gb|AAC37367.1| AFG2 [Saccharomyces cerevisiae]
 gi|625113|gb|AAB82355.1| Afg2p [Saccharomyces cerevisiae]
 gi|51013683|gb|AAT93135.1| YLR397C [Saccharomyces cerevisiae]
 gi|259148375|emb|CAY81622.1| Afg2p [Saccharomyces cerevisiae EC1118]
 gi|285813802|tpg|DAA09698.1| TPA: Afg2p [Saccharomyces cerevisiae S288c]
 gi|323332432|gb|EGA73841.1| Afg2p [Saccharomyces cerevisiae AWRI796]
 gi|323336415|gb|EGA77683.1| Afg2p [Saccharomyces cerevisiae Vin13]
 gi|323353724|gb|EGA85580.1| Afg2p [Saccharomyces cerevisiae VL3]
          Length = 780

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 35/173 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P R ++L GP G+GK+ L  + ++ S +   +    S+ S  +   +  L          
Sbjct: 278 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 337

Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                 +++ID +  N                L  +++ +      +++ A   P S   
Sbjct: 338 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNS--- 394

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             P L    +    V+I +PD D    ++ K F+     +  +D +   YI  
Sbjct: 395 VDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 447


>gi|219669020|ref|YP_002459455.1| replication initiation factor DnaA protein [Desulfitobacterium
           hafniense DCB-2]
 gi|219539280|gb|ACL21019.1| Chromosomal replication initiator DnaA domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 329

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 72/189 (38%), Gaps = 32/189 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDK---------------SRSTRFSNIAKSLDSILIDTRKP- 110
            +L GP G GKS L      +                ++  F+    +L    +  R P 
Sbjct: 27  TLLYGPEGVGKSTLLVKCCQRLKEKKTILYIDAQDFVKNYAFAAQEGTLSQFRLRLRTPG 86

Query: 111 -VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            ++++ I++L     +  + +H   ++ Q +  ++   R  P   G     L SRL+   
Sbjct: 87  VLIMDHIEVLKGKTRSIEEFYHTYEALFQRNGRIICGFRGDPSQLGFLGEKLSSRLRGGL 146

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD--------- 217
           VV I  P  + +   + +M   + + ++  +   ++     +   A+ L++         
Sbjct: 147 VVPILQPTPEDMLNYLRQMAYGKFLIVEDLVLE-LMAEEAANFPEAQSLMNGFIQFANRT 205

Query: 218 --KMDNLAL 224
              +D+ AL
Sbjct: 206 DSALDHDAL 214


>gi|66823793|ref|XP_645251.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4]
 gi|75009093|sp|Q75JU2|WRIP1_DICDI RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1 homolog
 gi|60473285|gb|EAL71231.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4]
          Length = 876

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 84/240 (35%), Gaps = 46/240 (19%)

Query: 4   MKEDYSFFVPDKQKNDQP---KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60
           +K  YSF    K+K+  P   + +  +L   F     I ++ LLV         ++    
Sbjct: 179 LKNKYSFLTNFKKKSFAPLSEQMRPTELS-DF-----IGQESLLVGDP------IVKKLF 226

Query: 61  SWPS-RVVILVGPSGSGKSCLANIWSDKSRSTR-----FSNIAKSLDSILIDTRKPVLLE 114
             P     IL GP G GK+ LA I + KS           +  K +  ++   R  +   
Sbjct: 227 QSPELPSFILYGPPGCGKTTLAQIVASKSNYNINALSAVGSGVKDIKEVIDKARNTLQFG 286

Query: 115 DIDLLDFNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKA 164
              +L  ++    H  N +         +    +L+  T              L SR   
Sbjct: 287 KKTILFIDEI---HRYNKLQQDVLLPAIESGIIILIGATTENPSFELNGA---LLSR--- 337

Query: 165 ATVVKISLPDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
             V K+     + LE +I +      +  DR++ +D+     + +  +     A  ++D 
Sbjct: 338 CKVFKMEKLTKENLETLIKRTLEVTPLLMDRRLIMDEDAIKSLAEIADGDARVAINVLDM 397


>gi|172040631|ref|YP_001800345.1| recombination factor protein RarA [Corynebacterium urealyticum DSM
           7109]
 gi|171851935|emb|CAQ04911.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
           7109]
          Length = 461

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 46/204 (22%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKP 110
              VIL GP G+GK+ +A++ S  S                  + I  +   +L   R  
Sbjct: 66  DSSVILFGPPGTGKTTIASLISAASGRHFVALSALNSGVKEVRAVIEDARRRLLHGARTV 125

Query: 111 VLLEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           + ++++          L     +  +  + LL+ A T   S+ V  P L SR   + +V+
Sbjct: 126 LFIDEVHRFSKTQQDALL----AAVENRTVLLVAATTENPSFSVVSP-LLSR---SLLVQ 177

Query: 170 ISLPDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +   D+D ++ V+ +  AD R +    ++A                  D +D LA   G 
Sbjct: 178 LKSLDEDGIKSVLRRAIADERGLAGQVQIAD-----------------DALDQLAAVSGG 220

Query: 229 GITRSL------AAEVLKETQQCD 246
              RSL      A +VL++ +  D
Sbjct: 221 DARRSLTYLEAVAEDVLQQKEAGD 244


>gi|27376818|ref|NP_768347.1| transposase [Bradyrhizobium japonicum USDA 110]
 gi|27377010|ref|NP_768539.1| transposase [Bradyrhizobium japonicum USDA 110]
 gi|27377107|ref|NP_768636.1| transposase [Bradyrhizobium japonicum USDA 110]
 gi|27378637|ref|NP_770166.1| transposase [Bradyrhizobium japonicum USDA 110]
 gi|27380110|ref|NP_771639.1| transposase [Bradyrhizobium japonicum USDA 110]
 gi|27349960|dbj|BAC46972.1| blr1707 [Bradyrhizobium japonicum USDA 110]
 gi|27350152|dbj|BAC47164.1| bll1899 [Bradyrhizobium japonicum USDA 110]
 gi|27350250|dbj|BAC47261.1| bll1996 [Bradyrhizobium japonicum USDA 110]
 gi|27351785|dbj|BAC48791.1| bll3526 [Bradyrhizobium japonicum USDA 110]
 gi|27353264|dbj|BAC50264.1| bll4999 [Bradyrhizobium japonicum USDA 110]
          Length = 281

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 27/151 (17%)

Query: 32  FPRCLGISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---- 83
            P        D     ++  A   A+   D W       ++L GP G GKS LA      
Sbjct: 83  LPTGKTFDSFDFEAVPMISKAQMTALAAGDGW-LGKGANLLLFGPPGGGKSHLAAAIGLA 141

Query: 84  -----WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---L 126
                W        D  +  + +    +L+  +  +D    V+L+D+  +  +  +   L
Sbjct: 142 LIENGWRVLFTRTTDLVQKLQVARRELNLEGAINRLDRFDLVILDDLAYVTKDQAETSVL 201

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           F +I S      SLL+TA      W    PD
Sbjct: 202 FELI-SARYERRSLLITANQPFGEWNKVFPD 231


>gi|289192266|ref|YP_003458207.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
           FS406-22]
 gi|288938716|gb|ADC69471.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
           FS406-22]
          Length = 903

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 57/231 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+LVGP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 212 PPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEEN 271

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 272 APSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALD-- 329

Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI--VQRM---- 205
            P L    R     V  I +PD +  ++++      R + + + +   Y+  V       
Sbjct: 330 -PALRRPGRFDREIV--IGVPDREGRKEILQ--IHTRNMPLAEDVDLDYLADVTHGFVGA 384

Query: 206 -------ERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEVLKETQ 243
                  E ++    +++  +D  A            +T     E LK+ +
Sbjct: 385 DLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNLKVTMDDFKEALKDVE 435



 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++S +   S
Sbjct: 485 PPKGVLLFGPPGTGKTLLAKAVANESGANFIS 516


>gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2492505|sp|Q58556|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156
 gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 903

 Score = 53.2 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 57/231 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+LVGP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 212 PPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEEN 271

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 272 APSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALD-- 329

Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI--VQRM---- 205
            P L    R     V  I +PD +  ++++      R + + + +   Y+  V       
Sbjct: 330 -PALRRPGRFDREIV--IGVPDREGRKEILQ--IHTRNMPLAEDVDLDYLADVTHGFVGA 384

Query: 206 -------ERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEVLKETQ 243
                  E ++    +++  +D  A            +T     E LK+ +
Sbjct: 385 DLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNLKVTMDDFKEALKDVE 435



 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++S +   S
Sbjct: 485 PPKGVLLFGPPGTGKTLLAKAVANESGANFIS 516


>gi|12620602|gb|AAG60878.1|AF322012_183 ID410 [Bradyrhizobium japonicum]
 gi|12620691|gb|AAG60967.1|AF322013_86 ID646 [Bradyrhizobium japonicum]
          Length = 269

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 27/151 (17%)

Query: 32  FPRCLGISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---- 83
            P        D     ++  A   A+   D W       ++L GP G GKS LA      
Sbjct: 71  LPTGKTFDSFDFEAVPMISKAQMTALAAGDGW-LGKGANLLLFGPPGGGKSHLAAAIGLA 129

Query: 84  -----WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---L 126
                W        D  +  + +    +L+  +  +D    V+L+D+  +  +  +   L
Sbjct: 130 LIENGWRVLFTRTTDLVQKLQVARRELNLEGAINRLDRFDLVILDDLAYVTKDQAETSVL 189

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           F +I S      SLL+TA      W    PD
Sbjct: 190 FELI-SARYERRSLLITANQPFGEWNKVFPD 219


>gi|148826111|ref|YP_001290864.1| recombination factor protein RarA [Haemophilus influenzae PittEE]
 gi|148716271|gb|ABQ98481.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus
           influenzae PittEE]
          Length = 453

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
              +  G  I R+L  EVL E Q 
Sbjct: 224 E--MENGKKIDRTLLKEVLGERQA 245


>gi|297527206|ref|YP_003669230.1| AAA ATPase central domain protein [Staphylothermus hellenicus DSM
           12710]
 gi|297256122|gb|ADI32331.1| AAA ATPase central domain protein [Staphylothermus hellenicus DSM
           12710]
          Length = 423

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 31/206 (15%)

Query: 53  VRLIDSWPSW-PSRVV-ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI------- 103
           ++ ++SW    PS+   +L GP+G GK+ L    +++         A             
Sbjct: 30  IQWLESWLKGKPSKKAALLYGPAGCGKTSLVEAAANEYGLEIVEMNASDFRRRQDIERIA 89

Query: 104 --------LIDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                   L    K +LL+++D +    +   ++ I++ +      ++MTA      W  
Sbjct: 90  KTAASMRSLFARGKIILLDEVDGISGTADKGAIYAILHLLEITRYPVVMTANNP---WDQ 146

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            L  L     A+ ++      +  +  V+ ++    ++  +      I +R E  L  A 
Sbjct: 147 KLRPLR---DASLMISFKRLTERNVVIVLKRICQFEKLECEDAALKEIARRSEGDLRSAI 203

Query: 214 KLVDKMDNLALSRG-MGITRSLAAEV 238
                 D  A++ G   +T +   E+
Sbjct: 204 N-----DLQAIAEGFGRVTLNWVREL 224


>gi|313680216|ref|YP_004057955.1| recombination protein mgsa [Oceanithermus profundus DSM 14977]
 gi|313152931|gb|ADR36782.1| Recombination protein MgsA [Oceanithermus profundus DSM 14977]
          Length = 435

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 19/186 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA I ++   +   +  A S     +        E +       T L
Sbjct: 47  MIFWGPPGTGKTTLARILANGVDARFVAMSAVSAGVKEVREAVKQAQEAV--SAGRPTVL 104

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173
           F    H  N           +     L+ A T   S+ V  P L SR   A V  +    
Sbjct: 105 FLDEVHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARVYVLKALG 160

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           +DD +  +   + +   +   +     +      ++  A + ++ ++  A   G  +T  
Sbjct: 161 EDDLMRVLERALISSEGLPEAEAEEEALRLIAAAAMGDARRALNALELAAELGGGRVTLD 220

Query: 234 LAAEVL 239
            A E L
Sbjct: 221 AAREAL 226


>gi|114766485|ref|ZP_01445443.1| transposion helper protein, ATP-binding protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114767342|ref|ZP_01446149.1| transposion helper protein, ATP-binding protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114540546|gb|EAU43621.1| transposion helper protein, ATP-binding protein [Roseovarius sp.
           HTCC2601]
 gi|114541252|gb|EAU44302.1| transposion helper protein, ATP-binding protein [Roseovarius sp.
           HTCC2601]
          Length = 274

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 32/165 (19%)

Query: 32  FPRCLGISRDDLLVHSAIEQAV--RLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDK 87
            P+   +   D L    + QA    L++   SW      ++  GP GSGK+ LA     +
Sbjct: 55  LPQGKTLDAFDFLAVPTLSQARVRALVEGD-SWLQAGHNLLAFGPPGSGKTHLAGAIGYE 113

Query: 88  SRSTRF------------------SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QL 126
                +                   ++A + +   +D    ++L+D+  +  +      L
Sbjct: 114 LIQRGYRVLMARTSDLVQRLQVARQDLALTQEIAKLDKFDLLILDDLSYVRKDQAETSAL 173

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           F +I S      S+++TA      W    PD     +A T+  I 
Sbjct: 174 FELI-SARYERRSIMITANQPFSGWDAIFPD-----RAMTIAAID 212


>gi|300087469|ref|YP_003757991.1| ATPase central domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527202|gb|ADJ25670.1| AAA ATPase central domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 442

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 39/213 (18%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
            L  +  S     +IL GP GSGK+ LAN+ +  + +      A S     +      ++
Sbjct: 44  ALRRALESGKLPSLILWGPPGSGKTTLANLLARATSAHFSPVSAVSAGVADLRK----VI 99

Query: 114 EDIDLLDFND---TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDL 158
           E+       +   T LF    H  N           +  + +L+ A T   S+ V  P L
Sbjct: 100 EEARQRRLGEGRGTILFIDEIHRFNKSQQDTILPFVEDGTVVLIGATTENPSFEVISP-L 158

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIV------QRM 205
            SR   A    +    +  ++ +I +  +DR       ++ +  +    I+       R+
Sbjct: 159 LSR---ARTFVLKGLSETDMKSIIERAVSDRDRGIGESRVDLSPEAMDRIISLASGDARI 215

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
             +++     V  +D    S    ++R    E 
Sbjct: 216 ALNILELAAGVTPVDE---SGRRKVSRQTVDEA 245


>gi|260889193|ref|ZP_05900456.1| ATPase, AAA family [Leptotrichia hofstadii F0254]
 gi|260861253|gb|EEX75753.1| ATPase, AAA family [Leptotrichia hofstadii F0254]
          Length = 407

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 74/238 (31%), Gaps = 49/238 (20%)

Query: 29  FFSFPRCLGISRDDL-----LVHSAIEQAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLA 81
             +F      S DD      LV        ++I+         +  I  G  G+GK+ LA
Sbjct: 13  PLAFRYRPK-SLDDFYGQKRLVGE-NGILRKIIER-----GNFMNAIFWGAPGTGKTTLA 65

Query: 82  NIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINS 132
            I +DK                 + +I                +   T LF    H  N 
Sbjct: 66  EIIADKMNYHYEYLNAIKASVTDIKNISDKAHSSF------HTNGQQTLLFLDEIHRFNK 119

Query: 133 IH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
           +         +  + +L+  T      S       L SR       +     +D L K++
Sbjct: 120 LQQDSLLEDLENGNIILIGATTENPYYSLNNA---LLSR---CMAFEFKKLSEDDLLKIL 173

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
             +     I I   +  YI + +E     A  +++ + N+    G+  T     E+L 
Sbjct: 174 KNINEKENIGISDDILGYISEIIEGDARQAINILELITNV----GVEFTLEEVKEILN 227


>gi|297181007|gb|ADI17208.1| ATPase related to the helicase subunit of the holliday junction
           resolvase [uncultured delta proteobacterium
           HF0070_10I02]
          Length = 481

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 85/205 (41%), Gaps = 25/205 (12%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           +  +     ++L GP G GK+ LA + ++K    +F  ++  +D I    +      DI 
Sbjct: 85  ALENGTLSSLLLWGPPGCGKTTLARLLANKVG-LKFLQLSAVMDGIKELRKLLDRARDIK 143

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
            L+   + LF    H  N           +  + +L+ A T    + + +P L SR    
Sbjct: 144 TLERRGSLLFVDEIHRWNKAQQDALLPHVEEGTVVLIGATTENPGFQI-IPALRSR---C 199

Query: 166 TVVKISLPDDDFLEKVIVKMFA--DRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDK 218
            ++ ++   ++ L +++ +  +  DR +       D++    IV         A  ++++
Sbjct: 200 WLLTLNPLGNEALTELLRRALSNTDRGLAKRNQMFDEEALHMIVAGASGDGRRALSVLER 259

Query: 219 MDNLALSRGMGITRSLAAEVLKETQ 243
           + + AL  G  + + +   V+ +T 
Sbjct: 260 I-SGALDDGETVDKEMLQTVMGKTD 283


>gi|303244607|ref|ZP_07330940.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
 gi|302485033|gb|EFL47964.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
          Length = 514

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 28/193 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDT 107
           P + V+LVGP G GK+ LAN  ++          A                S+   L   
Sbjct: 37  PVKPVLLVGPPGCGKTTLANALANDYGFEIIELNASDKRNKDVIKQVVGSASVSKSLSGK 96

Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           R  ++L+++D +    +   +  I+  I    + +++TA        +  P L S   A 
Sbjct: 97  RALIILDEVDGISGNSDRGGVSEILKIIKTAKNPIILTAN------DIYKPSLMSLRNAC 150

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +VKI     + +  V+ ++       +D  +   I +     +  A       D  +L+
Sbjct: 151 KIVKIGSVHTNSIVPVLRRIALKEGFNVDDSVLKIIAKHAGGDVRAAIN-----DLESLA 205

Query: 226 RGMGITRSLAAEV 238
            G  +      E+
Sbjct: 206 LGNDLNLEEVKEL 218


>gi|207342744|gb|EDZ70411.1| YLR397Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 671

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 35/173 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P R ++L GP G+GK+ L  + ++ S +   +    S+ S  +   +  L          
Sbjct: 169 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 228

Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                 +++ID +  N                L  +++ +      +++ A   P S   
Sbjct: 229 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNS--- 285

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             P L    +    V+I +PD D    ++ K F+     +  +D +   YI  
Sbjct: 286 VDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 338


>gi|189425920|ref|YP_001953097.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189422179|gb|ACD96577.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
          Length = 247

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88
           FP    +   +       EQ +R + +         +ILVG +GSGK+ LA   + ++  
Sbjct: 66  FPVEKDLDHFEFTESPVNEQQIRTLYEGSFLAQKSNIILVGGTGSGKTHLAIAIARQAVR 125

Query: 89  -----RSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLFHI 129
                R     ++   L+   +  +   L E    +DL+  ++             LFH+
Sbjct: 126 NGKRGRFFNLLDLVNQLEQEKLAGKGGKLAESLARLDLVVLDELGYLPFSKAGGQLLFHL 185

Query: 130 INSIHQYDSSLLMTARTFPVSWG 152
           I+ +++  + L++T       W 
Sbjct: 186 ISKLYER-TPLIITTNLPFSEWP 207


>gi|326201922|ref|ZP_08191792.1| AAA ATPase central domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325987717|gb|EGD48543.1| AAA ATPase central domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 427

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 72/182 (39%), Gaps = 33/182 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILIDTRKPVL- 112
           +IL GP G+GK+ LA I ++ ++             +      A + +++L    + VL 
Sbjct: 45  IILYGPPGTGKTSLARIIANTTQSSFEKLNAVTSGVADIKRIAADTQNTLLNPNGRTVLF 104

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I   +      L        +  S +L+ A T    + V    L SR   +TV  + 
Sbjct: 105 VDEIHRFNKAQQDALL----PFVEDGSIVLIGATTENPFFEVNKA-LISR---STVFMLK 156

Query: 172 LPDDDFLEKVIVKMFA--DRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             + + +++++       DR +      I  +   Y+    E S   A   ++ ++   L
Sbjct: 157 PLEGEDIKELLKNALEDKDRGLGNYEINITDEAMDYL---CEVSSGDARTALNSLELAVL 213

Query: 225 SR 226
           + 
Sbjct: 214 TS 215


>gi|319936498|ref|ZP_08010914.1| recombination protein rarA [Coprobacillus sp. 29_1]
 gi|319808613|gb|EFW05165.1| recombination protein rarA [Coprobacillus sp. 29_1]
          Length = 421

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 71/195 (36%), Gaps = 29/195 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
            IL GP G GK+ LA+  ++          + +     +   ++   +     V+++++ 
Sbjct: 42  TILYGPPGCGKTTLASALANDLNIPYRIFNASTGNKKEMDIIIEEAKMSGELFVIIDEVH 101

Query: 118 LLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L+ +  D  L HI N        L++   T    +    P + SR     ++++   D+
Sbjct: 102 RLNKDKQDHLLPHIEN------GLLVIAGCTTANPYHSINPAIRSR---CQIIEVKPLDE 152

Query: 176 DFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMG 229
           + +   +          + Q  ++  +  YI +    S        + ++  + L     
Sbjct: 153 EDIMSGLNHALNCENGLNHQFKVENGVLEYIAK---LSSGDIRYAYNCLEVASILCDADT 209

Query: 230 ITRSLAAEVLKETQQ 244
           IT  +  + L +   
Sbjct: 210 ITLQMVKQSLTKANA 224


>gi|118466446|ref|YP_882617.1| recombination factor protein RarA [Mycobacterium avium 104]
 gi|118167733|gb|ABK68630.1| ATP/GTP-binding protein [Mycobacterium avium 104]
          Length = 446

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 31/195 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
            IL GP GSGK+ LA + S  +          S   K + +++   R  +L        +
Sbjct: 64  AILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRGEQTVLFI 123

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     S  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 124 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 175

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
              D +  V+ +   D R +     +  +    ++ R+  +   A + +  ++  A   G
Sbjct: 176 LSADDIRTVVRRAIDDPRGLGGRVPVAPEAVD-LLVRL--AAGDARRALTALEVAA-EAG 231

Query: 228 MGITRSLAAEVLKET 242
             +T     + L E 
Sbjct: 232 ESVTVQTVEQSLDEA 246


>gi|41407170|ref|NP_960006.1| recombination factor protein RarA [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395521|gb|AAS03389.1| hypothetical protein MAP_1072 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 450

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 31/195 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
            IL GP GSGK+ LA + S  +          S   K + +++   R  +L        +
Sbjct: 68  AILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRGEQTVLFI 127

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     S  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 128 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 179

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
              D +  V+ +   D R +     +  +    ++ R+  +   A + +  ++  A   G
Sbjct: 180 LSADDIRTVVRRAIDDPRGLGGRVPVAPEAVD-LLVRL--AAGDARRALTALEVAA-EAG 235

Query: 228 MGITRSLAAEVLKET 242
             +T     + L E 
Sbjct: 236 ESVTVQTVEQSLDEA 250


>gi|315425404|dbj|BAJ47069.1| replication factor C large subunit [Candidatus Caldiarchaeum
           subterraneum]
          Length = 409

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 37/207 (17%)

Query: 48  AIEQAVRLIDSW-PSW----PSRVV-ILVGPSGSGKSCLANIWSD--------------- 86
             ++AV+    W   W    PS+   +L GP+G GK+ L + ++                
Sbjct: 19  GNKEAVQAFLEWMAGWEKGKPSKKAALLYGPAGVGKTSLVHAYASEKGYEVIETNASDFR 78

Query: 87  -KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMT 143
            +    R    A  + S+ +  RK +L++++D +D   +   +  + + I +    +++ 
Sbjct: 79  TRENIERIVGAASGMASLTMGQRKIILVDEVDGIDARADAGAVTSLADIISKTHVPVVLV 138

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVK---ISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           A      W   L  L     A  +++   I  P    +   + K+ A   + + + +   
Sbjct: 139 ANDP---WDPRLAPLR---DACLMIQFRRIPKPS---VAAHLKKIAAAENVRVPEDVLRR 189

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRG 227
           IV+  E  L  A   + +M + AL  G
Sbjct: 190 IVENSEGDLRSAINDL-QMASAALEMG 215


>gi|68249823|ref|YP_248935.1| recombination factor protein RarA [Haemophilus influenzae 86-028NP]
 gi|68058022|gb|AAX88275.1| predicted ATPase related to the helicase subunit of the holliday
           junction resolvase [Haemophilus influenzae 86-028NP]
          Length = 446

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
              +  G  I R+L  EVL E Q 
Sbjct: 224 E--MENGKKIDRTLLKEVLGERQA 245


>gi|282891290|ref|ZP_06299792.1| hypothetical protein pah_c050o063 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498787|gb|EFB41104.1| hypothetical protein pah_c050o063 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 419

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 22/151 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP+G+GK+ +A +++    +      + S     +   K V+ E  +   F  T L
Sbjct: 42  IILWGPAGTGKTSIARLYAQ---AFNIPFQSLSAIFSGVADLKKVVKEAEERPLFKGTLL 98

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLP 173
           F    H  N           +  S +L+ A     S    L D L SR +   V+K++  
Sbjct: 99  FVDEIHRFNKAQQDAFLPFLEKGSIVLIGATVENPS--FYLNDALLSRTR---VLKLNPL 153

Query: 174 DDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQ 203
           DD  LE+++ +     +++ +D +   Y++Q
Sbjct: 154 DDIALEQLLQRYETRVKKLNLDDQARRYLIQ 184


>gi|188581385|ref|YP_001924830.1| ATPase AAA [Methylobacterium populi BJ001]
 gi|179344883|gb|ACB80295.1| AAA ATPase central domain protein [Methylobacterium populi BJ001]
          Length = 462

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 29/203 (14%)

Query: 67  VILVGPSGSGKSCLANIWSD--------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           ++L GP G+GK+ +    +            + + + + + +          V+LED+DL
Sbjct: 232 LLLYGPPGTGKTHVIRYIASNLPERTTVLITAEQVAQLDRYMLLARTLQPSIVVLEDVDL 291

Query: 119 LDFN---------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165
           +  +         +  L  ++N    + +    L +     P         L SR     
Sbjct: 292 VGRSREGMNSPKTEVLLNRLLNEMDGLREDAEVLFILTTNRPDEIEEA---LASRPGRVD 348

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLAL 224
             ++I+ PD       +V ++  R +  +      IV R E  S  F ++++ ++   A+
Sbjct: 349 EAIEIANPD-TVCRSRLVTLYG-RALAFEDGAIEAIVDRSEGASAAFIKEMIRRLAQAAI 406

Query: 225 SRGM--GITRSLAAEVLKETQQC 245
             G    +T +    +L E    
Sbjct: 407 DSGSDNRVTVATVDAILGEAVGS 429


>gi|190405439|gb|EDV08706.1| protein AFG2 [Saccharomyces cerevisiae RM11-1a]
          Length = 780

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 45/178 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P R ++L GP G+GK+ L  + ++ S +   +    S+ S  +   +  L          
Sbjct: 278 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 337

Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                 +++ID +  N                L  +++ +      +++ A   P S   
Sbjct: 338 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNSVDH 397

Query: 154 CLP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
            L      D          V+I +PD D    ++ K F+     +  +D +   YI  
Sbjct: 398 ALRRPGRFD--------QEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 447


>gi|169334179|ref|ZP_02861372.1| hypothetical protein ANASTE_00575 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258896|gb|EDS72862.1| hypothetical protein ANASTE_00575 [Anaerofustis stercorihominis DSM
           17244]
          Length = 482

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 48/211 (22%)

Query: 24  KEEQLFFSFPRCLGISRDDL--------LVHSA---IEQAVRLIDSWPSWPSRVVILVGP 72
           +EEQL    P  + +  ++L        +V           R+I++        +IL GP
Sbjct: 52  REEQLKTKAPLAVRMRPENLDEFFGQEHIVGEGKLLN----RMIEADR---ISSIILFGP 104

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LF-- 127
           +G GK+ LA I ++K+ S  +S  A +     +      ++E+       + +   LF  
Sbjct: 105 AGCGKTTLARIIANKTSSYFYSLNAVTCGVKDVRE----IIENAKANLGMERKKSILFID 160

Query: 128 --HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
             H  N           +  + +L+ A T    + +  P L SR   +T+ K+   + + 
Sbjct: 161 EIHRFNKSQQDALLPSVEDGTIILIGATTENPFFEINSP-LISR---STLFKLKKIEKED 216

Query: 178 LEKVIVKMF--ADRQI-----FIDKKLAAYI 201
           + K+I       +R +      ID++   Y+
Sbjct: 217 VRKIIENTLKNKERGLGNYDIQIDEEAIDYL 247


>gi|3136020|emb|CAA19102.1| hypothetical protein MLCB1259.27 [Mycobacterium leprae]
          Length = 447

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
            IL GP G GK+ LA + S  +          S   K + ++L   R  +L        +
Sbjct: 64  AILHGPPGCGKTTLAALISQATGHRFEALSALSAGVKDVRAVLKIARSALLSGKRTVLFI 123

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     S  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 124 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 175

Query: 173 PDDDFLEKVIVKMFAD-R----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMD--NLALS 225
            + D +  V+ +   D R    QI +  +    ++ R+  +   A +++  ++    A+ 
Sbjct: 176 LNADDIRAVVQRAVDDPRGLGGQIAVAPEAVD-LLVRL--AAGDARRVLTALEVAAEAVQ 232

Query: 226 RGMGITRSLAAEVLKET 242
            G  +T +   + L   
Sbjct: 233 TGDELTVATIEQSLDNA 249


>gi|227873104|ref|ZP_03991398.1| crossover junction endodeoxyribonuclease ATPase [Oribacterium sinus
           F0268]
 gi|227841085|gb|EEJ51421.1| crossover junction endodeoxyribonuclease ATPase [Oribacterium sinus
           F0268]
          Length = 421

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 74/199 (37%), Gaps = 29/199 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G+GK+ LA + ++ S++      A +     ++       E++       T L
Sbjct: 55  LLFFGPPGTGKTSLAKVIANSSKADFIPINATTAGKKDMEEAVARAKENM-GGYGRKTIL 113

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + + ++    
Sbjct: 114 FVDEIHRFNKAQQDYLLPHVEEGTIILIGATTENPYFEVNTA-LLSR---SQLFELHSLK 169

Query: 175 DDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            + + K++     D  R +      ++++   ++ +        A   ++ ++   LS  
Sbjct: 170 KEDIVKLLQTATQDKTRGMGNYNAVLEEEACDFLAEHA---FGDARVALNALELAILSTN 226

Query: 228 MGIT--RSLAAEVLKETQQ 244
              T    +  EV+ E  Q
Sbjct: 227 PSATGEIRITKEVVAECMQ 245


>gi|219883123|ref|YP_002478285.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219883240|ref|YP_002478402.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219867248|gb|ACL47586.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219867365|gb|ACL47703.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
          Length = 236

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 37/155 (23%)

Query: 25  EEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           E QL        F F  C   +   L+    + QA   +    +      IL+GPSG GK
Sbjct: 44  EAQLPAAKSFTNFDFSHCPQFNPAPLM---QLAQATDWLARAQNC-----ILLGPSGVGK 95

Query: 78  SCLAN--------------IWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLL 119
           + LA                ++  +   +  +    L        +D    ++L+D+  +
Sbjct: 96  THLAASLARRCIELGKRVKFFAATALVQQLQDAKLQLQLYPLLKKLDRYDLLVLDDLGYV 155

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSW 151
             N+T+   LF +I +      SLL+TA      W
Sbjct: 156 KKNETETSVLFELI-AHRYERKSLLITANQPFSQW 189


>gi|229847091|ref|ZP_04467196.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1]
 gi|229809920|gb|EEP45641.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1]
          Length = 446

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  S + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGSVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
              +  G  I R+L  EVL E Q 
Sbjct: 224 E--MENGKKIDRTLLKEVLGERQA 245


>gi|161527523|ref|YP_001581349.1| ATPase AAA [Nitrosopumilus maritimus SCM1]
 gi|160338824|gb|ABX11911.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1]
          Length = 713

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 33/159 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++ +   S                 I +  +    ++   
Sbjct: 214 VLLYGPPGTGKTLLAKAVAGETNAHFISLSGPEIMGKYYGESEEKIREIFNQAEENSPSI 273

Query: 111 VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           + +++ID +    ++          +QL  +++ +      +++ A   P S     P L
Sbjct: 274 IFIDEIDSIAPKRDEVSGEVEKRIVSQLLTLMDGMKSRGKVVVIAATNRPDSID---PAL 330

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               +    ++I +PDD+   +++      R + ID+K+
Sbjct: 331 RRPGRFDREIEIGIPDDEGRFEIL--SIHTRGMPIDEKV 367


>gi|7476091|pir||T10001 replication initiation protein dnaA - Mycobacterium leprae
           (fragment)
 gi|1262352|emb|CAA94708.1| DnaA [Mycobacterium leprae]
          Length = 198

 Score = 52.5 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 154 CLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L D L +R +   +  +  P+ +    ++ K     ++ +   +   I   +ER++   
Sbjct: 4   TLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPGDVLELIASSIERNIREL 63

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           E  + ++   A      I ++LA  VL++ 
Sbjct: 64  EGALIRVTAFASLNKTAIDKALAEIVLRDL 93


>gi|145219908|ref|YP_001130617.1| recombination factor protein RarA [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206072|gb|ABP37115.1| Recombination protein MgsA [Chlorobium phaeovibrioides DSM 265]
          Length = 445

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 34/201 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKP--------V 111
             +I  GP G+GK+ LA I +              +  K +   L D            +
Sbjct: 62  PSMIFWGPPGTGKTTLAEICASALGFRFETLSAIDSGVKEVRRALSDAASARERGERTIL 121

Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            +++I   +      L H I    +    +L+ A T   S+ V    L SR++   V  +
Sbjct: 122 FIDEIHRFNKAQQDTLLHAI----EQGVVVLIGATTENPSFEVNAA-LLSRMQ---VYIL 173

Query: 171 SLPDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-A 223
               +D +  +I +      +FA R++ ++     ++++        A K ++ ++   +
Sbjct: 174 KPLTEDDIASLIQRAMDGDSLFASRKVELED--PGFLLRFAG---GDARKALNALEAAMS 228

Query: 224 LSRGMGITRSLAAEVLKETQQ 244
           L         L A+V +   Q
Sbjct: 229 LVPEGDGPVQLTADVFERALQ 249


>gi|120403620|ref|YP_953449.1| recombination factor protein RarA [Mycobacterium vanbaalenii PYR-1]
 gi|119956438|gb|ABM13443.1| Recombination protein MgsA [Mycobacterium vanbaalenii PYR-1]
          Length = 429

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 76/195 (38%), Gaps = 31/195 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKP--------VLL 113
           VIL GP G+GK+ LA++ S  +          +   K + +++   R+         + +
Sbjct: 50  VILYGPPGTGKTTLASMISQATGRRFEALSALAAGVKEVRAVIDVARQASMRGEQTVLFI 109

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 110 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 161

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
              + +  VI +   D R +     +  +    +VQ    S   A + +  ++  +   G
Sbjct: 162 LTPEDVTTVIRRAIEDPRGLGGKVAVTDEAVDQLVQ---LSAGDARRALTALEVAS-ESG 217

Query: 228 MGITRSLAAEVLKET 242
             +T  +  + L + 
Sbjct: 218 EEVTVEVIEQSLDKA 232


>gi|323474695|gb|ADX85301.1| AAA ATPase central domain protein [Sulfolobus islandicus REY15A]
 gi|323477429|gb|ADX82667.1| AAA ATPase central domain protein [Sulfolobus islandicus HVE10/4]
          Length = 405

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 31/187 (16%)

Query: 54  RLIDSWPSW-PSRVVIL-VGPSGSGKSCLANIWSDKSRSTR----------------FSN 95
             I+SW +  P+   +L  GP G GK+ LA   +                        + 
Sbjct: 28  EWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKSVAE 87

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            A    SI     K +LL+++D ++  +    +  I+  I +    ++MTA      W  
Sbjct: 88  KASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDP---WNP 144

Query: 154 CLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L +L ++ K   + K+   P    L +++ K+    +I  D +   YI   ++ S   A
Sbjct: 145 ALRELRNKTKMVGLNKLGKYP----LRRLLKKICQAEKIICDDEALNYI---IDTSEGDA 197

Query: 213 EKLVDKM 219
              ++ +
Sbjct: 198 RYAINML 204


>gi|323525162|ref|YP_004227315.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001]
 gi|323382164|gb|ADX54255.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001]
          Length = 437

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 24/191 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +D   +   +    ++ S + D R+ V    I   + + T +
Sbjct: 48  MILWGPPGVGKTTLARLMADAFHAQFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 105

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +    + + A T   S+ V    L SR   A V  +   D
Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFIGATTENPSFEVNSA-LLSR---AAVYVLKSLD 161

Query: 175 DDFLEKVIVK-MFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGI 230
           +D L +++ +       +    +    ++   +   R L+   ++V +    +  +   I
Sbjct: 162 EDELRELLERAQHELGGLTFTDEARDALIGSADGDGRKLLNNLEIVAR--AASQQKKTEI 219

Query: 231 TRSLAAEVLKE 241
             +L    L E
Sbjct: 220 DGALLGSALAE 230


>gi|261403322|ref|YP_003247546.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
           M7]
 gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
           M7]
          Length = 903

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 57/231 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+LVGP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 212 PPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEEN 271

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +    ++           QL  +++ +      +++ A   P +    
Sbjct: 272 APSIIFIDELDAIAPKRDEASGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALD-- 329

Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI--VQRM---- 205
            P L    R     V  I +PD +  ++++      R + + + +   Y+  V       
Sbjct: 330 -PALRRPGRFDREIV--IGVPDREGRKEILQ--IHTRNMPLAEDVDLDYLADVTHGFVGA 384

Query: 206 -------ERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEVLKETQ 243
                  E ++    +++  +D  A            +T     E LKE +
Sbjct: 385 DLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNLKVTMDDFKEALKEVE 435



 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 36/165 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + V+L GP G+GK+ LA   +++S +   S               K++  I    R  
Sbjct: 485 PPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQS 544

Query: 109 KPVLL--EDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            P ++  ++ID +                  QL   ++ + +    +++ A   P     
Sbjct: 545 APCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVIVIAATNRPDIIDS 604

Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            L  L   RL    V+ + +PD+     ++      R + +D+ +
Sbjct: 605 AL--LRPGRLD--RVILVPVPDEKARLDIL--KIHTRSMNLDEDV 643


>gi|227830341|ref|YP_002832121.1| replication factor C large subunit [Sulfolobus islandicus L.S.2.15]
 gi|229579158|ref|YP_002837556.1| replication factor C large subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|284997766|ref|YP_003419533.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5]
 gi|259585236|sp|C3MQ13|RFCL_SULIL RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|259585591|sp|C3NE95|RFCL_SULIY RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|227456789|gb|ACP35476.1| AAA ATPase central domain protein [Sulfolobus islandicus L.S.2.15]
 gi|228009872|gb|ACP45634.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|284445661|gb|ADB87163.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 405

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 31/187 (16%)

Query: 54  RLIDSWPSW-PSRVVIL-VGPSGSGKSCLANIWSDKSRSTR----------------FSN 95
             I+SW +  P+   +L  GP G GK+ LA   +                        + 
Sbjct: 28  EWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKGVAE 87

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            A    SI     K +LL+++D ++  +    +  I+  I +    ++MTA      W  
Sbjct: 88  KASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDP---WNP 144

Query: 154 CLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L +L ++ K   + K+   P    L +++ K+    +I  D +   YI   ++ S   A
Sbjct: 145 ALRELRNKTKMVGLNKLGKYP----LRRLLKKICQAEKIICDDEALNYI---IDTSEGDA 197

Query: 213 EKLVDKM 219
              ++ +
Sbjct: 198 RYAINML 204


>gi|296170787|ref|ZP_06852359.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894602|gb|EFG74339.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 451

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 44/212 (20%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRL----IDS--------WPSWPSRVVI--------- 68
           F  P     S   L V +    AVR+    +D          P  P R ++         
Sbjct: 10  FDLPGAAPASDHGLGVSAGAPLAVRMRPASLDEVVGQEHLLAPGSPLRRLVEGSGMASVI 69

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF- 127
           L GP GSGK+ LA +   ++ + RF  ++ +L + + D R  + +    LL+   T LF 
Sbjct: 70  LYGPPGSGKTTLAALI-SQATARRFEALS-ALSAGVKDVRAVIDVARRALLNGEQTVLFI 127

Query: 128 ---HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              H  +        S  +    LL+ A T   S+ V  P L SR   + ++++   D D
Sbjct: 128 DEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRPLDAD 183

Query: 177 FLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203
            +  V+ +   D R +     +  +    +V+
Sbjct: 184 DIRAVVRRAIDDPRGLGGRVAVTPEAVDLLVR 215


>gi|256810701|ref|YP_003128070.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
           AG86]
 gi|256793901|gb|ACV24570.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
           AG86]
          Length = 903

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 57/231 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+LVGP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 212 PPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEEN 271

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 272 APSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALD-- 329

Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI--VQRM---- 205
            P L    R     V  I +PD +  ++++      R + + + +   Y+  V       
Sbjct: 330 -PALRRPGRFDREIV--IGVPDREGRKEILQ--IHTRNMPLAEDVDLDYLADVTHGFVGA 384

Query: 206 -------ERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEVLKETQ 243
                  E ++    +++  +D  A            +T     E LK+ +
Sbjct: 385 DLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNLKVTMDDFKEALKDVE 435



 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++S +   S
Sbjct: 485 PPKGVLLFGPPGTGKTLLAKAVANESGANFIS 516


>gi|238619813|ref|YP_002914639.1| replication factor C large subunit [Sulfolobus islandicus M.16.4]
 gi|259585253|sp|C4KHA7|RFCL_SULIK RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|238380883|gb|ACR41971.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4]
          Length = 405

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 31/187 (16%)

Query: 54  RLIDSWPSW-PSRVVIL-VGPSGSGKSCLANIWSDKSRSTR----------------FSN 95
             I+SW +  P+   +L  GP G GK+ LA   +                        + 
Sbjct: 28  EWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKSVAE 87

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            A    SI     K +LL+++D ++  +    +  I+  I +    ++MTA      W  
Sbjct: 88  KASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDP---WNP 144

Query: 154 CLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L +L ++ K   + K+   P    L +++ K+    +I  D +   YI   ++ S   A
Sbjct: 145 ALRELRNKTKMVGLNKLGKYP----LRRLLKKICQAEKIICDDEALNYI---IDTSEGDA 197

Query: 213 EKLVDKM 219
              ++ +
Sbjct: 198 RYAINML 204


>gi|312795386|ref|YP_004028308.1| ATPase AAA [Burkholderia rhizoxinica HKI 454]
 gi|312167161|emb|CBW74164.1| ATPase, AAA family [Burkholderia rhizoxinica HKI 454]
          Length = 438

 Score = 52.5 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 20/175 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +    +   +    ++ S + D R+ V L          T +
Sbjct: 48  MILWGPPGVGKTTLARLMAAAFHAEFIA--LSAVLSGVKDIREAVDLAQAHRARGRQTLV 105

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +    + + A T   S+ V    L SR   A V  +   D
Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLD 161

Query: 175 DDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           D     ++ + FA+    + I       ++   +         V+ +   A    
Sbjct: 162 DHEQRALLERAFAELGGGLTITDSARDALIGSADGDGRKLLNNVEIVARAAYRAK 216


>gi|223044087|ref|ZP_03614126.1| ATPase, AAA family [Staphylococcus capitis SK14]
 gi|222442481|gb|EEE48587.1| ATPase, AAA family [Staphylococcus capitis SK14]
          Length = 425

 Score = 52.1 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 33/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 46  MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQMVVEEAKMSGQVILLLDEIH 105

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 106 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 154

Query: 174 DDDFLEKVIVKMF--ADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDK--MDNLAL 224
           DD  +   + +    +DR +      +D+    Y   + +  +  A   ++   +    +
Sbjct: 155 DDHDVRIALDRAIEDSDRGLKSYHPIVDEDAMEYFSTQSQGDVRSALNALELAVLSAEVV 214

Query: 225 SRGMGITRSLAAEVLKE 241
                IT   A + L++
Sbjct: 215 KNQRHITLDDAKDCLQK 231


>gi|291280753|ref|YP_003497587.1| hypothetical protein DEFDS_P211 [Deferribacter desulfuricans SSM1]
 gi|290755455|dbj|BAI81831.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 535

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANI 83
               + D+ +V ++ E A   I +      R    V+L GP+G GKS L + 
Sbjct: 144 TPQYTFDNFIVDTSNELAYHYIKNIAENKLRDGLTVLLYGPTGLGKSHLLHA 195


>gi|284931012|gb|ADC30950.1| chromosomal replication initiator protein DnaA [Mycoplasma
           gallisepticum str. F]
          Length = 461

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 37/206 (17%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS------WPSRVVILVGPSGSGKSCLAN 82
             S       +  + LV    ++AV L     +      W    +I+ G  G GKS L  
Sbjct: 116 PLSKGIKEKYNFGNYLVFEFNKEAVYLAKQIANKTTHSNW--NPIIIEGKPGYGKSHLLQ 173

Query: 83  IWSDKSR--------STRFSNIAKSLDSILIDTRKPVLLE-------DIDLLDFND---- 123
             +++ +            S+   S     +    P  +E       D DLL  +D    
Sbjct: 174 AIANERQKLFPEEKICVLSSDDFGSEFLKSVIAPDPTHIESFKSKYKDYDLLMIDDVQII 233

Query: 124 -------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLPDD 175
                     F I NS+     ++++T           L   + SR +    V+I+ P+ 
Sbjct: 234 SNRPKTNETFFTIFNSLVDQKKTIVITLDCKIEEIQDKLTARMISRFQKGINVRINQPNK 293

Query: 176 DFLEKVIVKMFADRQIF--IDKKLAA 199
           + + ++  + F +  +   +D  +  
Sbjct: 294 NEIIQIFKQKFKENNLEKYMDDHVIE 319


>gi|31544207|ref|NP_852785.1| chromosomal replication initiator protein DnaA [Mycoplasma
           gallisepticum str. R(low)]
 gi|31541051|gb|AAP56353.1| chromosomal replication initiator protein DnaA [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930245|gb|ADC30184.1| chromosomal replication initiator protein DnaA [Mycoplasma
           gallisepticum str. R(high)]
          Length = 461

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 37/206 (17%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS------WPSRVVILVGPSGSGKSCLAN 82
             S       +  + LV    ++AV L     +      W    +I+ G  G GKS L  
Sbjct: 116 PLSKGIKEKYNFGNYLVFEFNKEAVYLAKQIANKTTHSNW--NPIIIEGKPGYGKSHLLQ 173

Query: 83  IWSDKSR--------STRFSNIAKSLDSILIDTRKPVLLE-------DIDLLDFND---- 123
             +++ +            S+   S     +    P  +E       D DLL  +D    
Sbjct: 174 AIANERQKLFPEEKICVLSSDDFGSEFLKSVIAPDPTHIESFKSKYKDYDLLMIDDVQII 233

Query: 124 -------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLPDD 175
                     F I NS+     ++++T           L   + SR +    V+I+ P+ 
Sbjct: 234 SNRPKTNETFFTIFNSLVDQKKTIVITLDCKIEEIQDKLTARMISRFQKGINVRINQPNK 293

Query: 176 DFLEKVIVKMFADRQIF--IDKKLAA 199
           + + ++  + F +  +   +D  +  
Sbjct: 294 NEIIQIFKQKFKENNLEKYMDDHVIE 319


>gi|325282636|ref|YP_004255177.1| AAA ATPase central domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324314445|gb|ADY25560.1| AAA ATPase central domain protein [Deinococcus proteolyticus MRP]
          Length = 429

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 25/175 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA + + +  S      A S  + + D R+ VL  +        T
Sbjct: 45  PSLILWGPPGVGKTTLARLVAGEVGSHFIGLSAVS--AGVKDVREAVLEAEARRGRGQKT 102

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     L+ A T   S+ V  P L SR   A  + +  
Sbjct: 103 VLFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARTLVLEA 158

Query: 173 PDDDFLEKVIVKMFAD-RQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              D +  ++ +   D R +    ++ +    + +  +       + +  ++  A
Sbjct: 159 LSKDDIRALLERALTDPRGLEGVRMEPEALELLARLAD---GDGRRALGTLEAAA 210


>gi|212224263|ref|YP_002307499.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
 gi|212009220|gb|ACJ16602.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
          Length = 797

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 79/212 (37%), Gaps = 37/212 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  +  +  + 
Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEEN 274

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 275 APAIIFIDEIDAIAPKREETHGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDAID-- 332

Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            P L    R       ++ +PD    ++++      R + I+ +     V+++  +L   
Sbjct: 333 -PALRRPGRFDREL--EVGVPDKQGRKEILQ--IHTRGMPIEPEFRVSKVKKILENLRGD 387

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           E+  D +D          T     E+L+E  +
Sbjct: 388 ERFRDVIDRAIEKVERAKTEEEVKEILRELDE 419



 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 72/215 (33%), Gaps = 45/215 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G+GK+ LA   + +S +   +                NI +        
Sbjct: 550 PPKGILLYGPPGTGKTLLAKAVATESEANFIAIRGPEVLSKWVGESEKNIREIFRKARQA 609

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL   ++ I +    +++ A   P      
Sbjct: 610 APTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIAENSGVVVIAATNRPDIIDPA 669

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208
           L  L      RL     + +  PD+    ++ +     R + + + +    + +R E  +
Sbjct: 670 L--LRPGRFDRL-----ILVPAPDE--KARLEIFKVHTRNVPLAEDISLEELARRTEGYT 720

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                 +V +     L+    +   +    +K  +
Sbjct: 721 GADIAAVVRE--AAMLAMRKALQEGVIKPGMKADE 753


>gi|301156050|emb|CBW15521.1| recombination protein [Haemophilus parainfluenzae T3T1]
          Length = 446

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I +++  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIANRINAEVERISAVTSGVKEIRESIERAKQNRLADRQTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSR---ARVYLLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223
                 +E+V+ +  +D  R      + +++ L   + + +      A   ++ M D  +
Sbjct: 164 SLTIAEIEQVLKQAISDPERGLGKERLVLEENLLQVLAEYVNGDARLALNCLELMVDMAS 223

Query: 224 LSR-GMGITRSLAAEVLKETQQ 244
            +  G  + R+L  EVL E Q 
Sbjct: 224 EAENGKKLDRTLLKEVLGERQA 245


>gi|315427366|dbj|BAJ48976.1| replication factor C large subunit [Candidatus Caldiarchaeum
           subterraneum]
          Length = 409

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 37/207 (17%)

Query: 48  AIEQAVRLIDSW-PSW----PSRVV-ILVGPSGSGKSCLANIWS---------------- 85
             ++AV+    W   W    PS+   +L GP+G GK+ L + ++                
Sbjct: 19  GNKEAVQAFLEWMAGWEKGKPSKKAALLYGPAGVGKTSLVHAYAYEKGYEVIETNASDFR 78

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMT 143
            +    R    A  + S+ +  RK +L++++D +D   +   +  + + I +    +++ 
Sbjct: 79  TRENIERIVGAASGMASLTMGQRKIILVDEVDGIDARADAGAVTSLADIISKTHVPVVLV 138

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVK---ISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           A      W   L  L     A  +++   I  P    +   + K+ A   + + + +   
Sbjct: 139 ANDP---WDPRLAPLR---DACLMIQFRRIPKPS---VAAHLKKIAAAENVRVPEDVLRR 189

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRG 227
           IV+  E  L  A   + +M + AL  G
Sbjct: 190 IVENSEGDLRSAINDL-QMASAALEMG 215


>gi|110224493|emb|CAJ98744.1| replication initiator [Francisella tularensis subsp. mediasiatica]
 gi|110224495|emb|CAJ98745.1| replication initiator [Francisella tularensis subsp. mediasiatica]
 gi|110224503|emb|CAJ98749.1| replication initiator [Francisella tularensis subsp. tularensis
           ATCC 6223]
 gi|110224505|emb|CAJ98750.1| replication initiator [Francisella tularensis subsp. tularensis]
 gi|110224507|emb|CAJ98751.1| replication initiator [Francisella tularensis subsp. tularensis]
 gi|110224509|emb|CAJ98752.1| replication initiator [Francisella tularensis subsp. mediasiatica]
 gi|110224511|emb|CAJ98753.1| replication initiator [Francisella tularensis subsp. holarctica]
 gi|110224513|emb|CAJ98754.1| replication initiator [Francisella tularensis subsp. holarctica]
 gi|110224515|emb|CAJ98755.1| replication initiator [Francisella tularensis subsp. holarctica]
          Length = 157

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 40  EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 99

Query: 83  IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117
              + +R    +   I  + +  + D    + L+D D
Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136


>gi|110224517|emb|CAJ98756.1| replication initiator [Francisella tularensis subsp. holarctica]
          Length = 157

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 40  EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 99

Query: 83  IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117
              + +R    +   I  + +  + D    + L+D D
Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136


>gi|110224519|emb|CAJ98757.1| replication initiator [Francisella tularensis subsp. holarctica]
 gi|110224521|emb|CAJ98758.1| replication initiator [Francisella tularensis subsp. holarctica]
          Length = 157

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 40  EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 99

Query: 83  IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117
              + +R    +   I  + +  + D    + L+D D
Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136


>gi|110224499|emb|CAJ98747.1| replication initiator [Francisella novicida]
          Length = 157

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 40  EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLYNPLFIYGGSGLGKTHLMQ 99

Query: 83  IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117
              + +R    +   I  + +  + D    + L+D D
Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136


>gi|110224497|emb|CAJ98746.1| replication initiator [Francisella novicida]
 gi|110224501|emb|CAJ98748.1| replication initiator [Francisella novicida]
          Length = 157

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 40  EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 99

Query: 83  IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117
              + +R    +   I  + +  + D    + L+D D
Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136


>gi|110224523|emb|CAJ98759.1| replication initiator [Francisella novicida]
 gi|259236200|gb|ACW20340.1| DnaA [Francisella sp. FnSp1]
          Length = 157

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82
           E+  F  P       D  +V  A + A          P ++   + + G SG GK+ L  
Sbjct: 40  EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 99

Query: 83  IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117
              + +R    +   I  + +  + D    + L+D D
Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136


>gi|110598474|ref|ZP_01386745.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031]
 gi|110339924|gb|EAT58428.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031]
          Length = 447

 Score = 52.1 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 32/200 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSILIDTRKP-----------V 111
             +I  GP GSGK+ LA I +     R  + S I   +  +                  +
Sbjct: 62  PSMIFWGPPGSGKTTLAEICAASLNYRFEQLSAIDSGVKDVRKALDNAQKSRASGLRTIL 121

Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            +++I   +      L H I    +    +L+ A T   S+ V    L SR++   V  +
Sbjct: 122 FIDEIHRFNKGQQDTLLHAI----EQGLIVLIGATTENPSFEVNAA-LLSRMQ---VYIL 173

Query: 171 SLPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
                + +  VI       ++F + QI I      +++Q        A   V+    L+L
Sbjct: 174 KPLQSEEILAVIRRALKEDRLFGELQIEIAD--PDFLLQFAGGDARKALNAVET--ALSL 229

Query: 225 SRGMGITRSLAAEVLKETQQ 244
                    L  E+L+   Q
Sbjct: 230 LPQDQTEIVLDRELLERALQ 249


>gi|170783848|gb|ACB37397.1| DnaA [Spiroplasma eriocheiris]
 gi|170783850|gb|ACB37398.1| DnaA [Spiroplasma sp. CRAYFISH]
 gi|170783854|gb|ACB37400.1| DnaA [Spiroplasma sp. SHRIMP]
          Length = 150

 Score = 52.1 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 106 DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           D    +L++DI LL   +      F+I NS  + +  +++T+  +P   G     + SR 
Sbjct: 40  DKFDCLLIDDIQLLAKRNKTNELFFYIFNSFIEKNKQIVITSDKYPDDLGGFEARIISRF 99

Query: 163 KAATVVKISLPD-DDFLEKVIVKMFADRQIFI-DKKLAAYIVQR 204
                + +  PD +  ++ +  K+     + +  ++   +I   
Sbjct: 100 SYGLSIGLDSPDFETAIKILEQKLKQQNNLALFSEESLEFIALN 143


>gi|170691962|ref|ZP_02883126.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
 gi|170143246|gb|EDT11410.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
          Length = 480

 Score = 52.1 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 24/191 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +D   +   +    ++ S + D R+ V    I   + + T +
Sbjct: 91  MILWGPPGVGKTTLARLMADAFHAQFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 148

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +    + + A T   S+ V    L SR   A V  +   D
Sbjct: 149 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLD 204

Query: 175 DDFLEKVIVKMFADR---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGI 230
           +D L +++ +  A R    +    +    ++   +         ++ +   A  +    I
Sbjct: 205 EDELRELLER--AQRELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAAAQQKTTEI 262

Query: 231 TRSLAAEVLKE 241
             +L    L E
Sbjct: 263 DGALLGSALAE 273


>gi|256269128|gb|EEU04463.1| Afg2p [Saccharomyces cerevisiae JAY291]
          Length = 780

 Score = 52.1 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 35/173 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P R ++L GP G+GK+ L  + ++ S +   +    S+ S  +   +  L          
Sbjct: 278 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 337

Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                 +++ID +  N                L  +++ +      +++ A   P S   
Sbjct: 338 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGVAGKVVVIAATNRPNS--- 394

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             P L    +    V+I +PD D    ++ K F+     +  +D +   YI  
Sbjct: 395 VDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 447


>gi|220903289|ref|YP_002478601.1| Chromosomal replication initiator DnaA domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219867588|gb|ACL47923.1| Chromosomal replication initiator DnaA domain protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 457

 Score = 51.7 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 69/212 (32%), Gaps = 45/212 (21%)

Query: 40  RDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN------------- 82
             D + +         A  L     S      ++ G SG+GKS L               
Sbjct: 113 FADFICNDKNAFPLATARDLAADTTSTAYNPFLVCGRSGTGKSRLLQAMTCVMSRTADPA 172

Query: 83  --IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHII------- 130
             I S  +R      +      +       ++L+DI  L  +D     L  II       
Sbjct: 173 RMICSSAARFCSEHLVWARRPELFWLRYDVLVLDDIQDLAGHDAWQRKLVTIIDTCPGRQ 232

Query: 131 -NS---------------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
            N                IH+    ++      P +       L SRL++  VV++  PD
Sbjct: 233 KNLPGIPSGEDIPSAGEQIHRAAPRMIFACSGQPQALKALDERLRSRLESGLVVELMEPD 292

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            D   + +  +  +R++ + ++   ++ QR  
Sbjct: 293 LDVRLRYLQVICKERRLPLTREQLLFLAQRCS 324


>gi|300122395|emb|CBK22966.2| unnamed protein product [Blastocystis hominis]
          Length = 844

 Score = 51.7 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ LA   ++++ +  F                SN+ K+ +    +
Sbjct: 239 PPRGVLLYGPPGSGKTLLARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 298

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I Q  + +++ A   P    V 
Sbjct: 299 APSIIFIDEIDSIAPKREKINGEVEKRVVSQLLTLMDGIKQRSNVVVIGATNRP---NVI 355

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +++      + + +D  +
Sbjct: 356 DPALR-RFGRFDREIDIGVPDEAGRLEIL--RIHSKNMKLDASV 396


>gi|237785603|ref|YP_002906308.1| hypothetical protein ckrop_1012 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758515|gb|ACR17765.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 459

 Score = 51.7 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 28/187 (14%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL------ 112
              VIL GP G+GK+ +A++ S  +          S+  K + S+L + R+ ++      
Sbjct: 73  DSSVILFGPPGTGKTTIASLVSSTTGRRFRVLSALSSGVKEIRSVLKEARQALIDGVQTV 132

Query: 113 --LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             ++++          L     +  +  + LL+ A T   ++ V  P L SR   + +V+
Sbjct: 133 LFIDEVHRFSKTQQDALL----AAVENRTVLLVAATTENPNFAVVGP-LLSR---SLLVQ 184

Query: 170 ISLPDDDFLEKVI-VKMFADRQIF----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
           +   DD+ +  VI   + + R +     ID      IV         A   V+     +L
Sbjct: 185 LEPLDDEAIRTVINRSVSSQRGLAGRIRIDDDAVNSIVAMAGGDARRALTYVEA-SAQSL 243

Query: 225 SRGMGIT 231
             G  IT
Sbjct: 244 DDGETIT 250


>gi|270339823|ref|ZP_06006115.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333709|gb|EFA44495.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 192

 Score = 51.7 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 24/117 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GPSG+GK+ +A     ++    +     +++ ++                  +   
Sbjct: 43  LILMGPSGTGKTFIAAGLVYEAVGQGYKAYMVTMEDVINTIKMKTLMPSAMSAYNRLLKA 102

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS 160
             V ++DI L      +    F+++N++H+  +SL++T    P  W   L D  L S
Sbjct: 103 DLVAIDDIMLFPVKKEDAAGFFNLVNTLHE-KASLIITTNKAPTEWAKTLDDEVLAS 158


>gi|260580369|ref|ZP_05848198.1| replication-associated recombination protein A [Haemophilus
           influenzae RdAW]
 gi|260093046|gb|EEW76980.1| replication-associated recombination protein A [Haemophilus
           influenzae RdAW]
          Length = 446

 Score = 51.7 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQVLQQAVEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
                 G  I R+L  EVL E Q 
Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245


>gi|300790512|ref|YP_003770803.1| ATPase [Amycolatopsis mediterranei U32]
 gi|299800026|gb|ADJ50401.1| ATPase [Amycolatopsis mediterranei U32]
          Length = 462

 Score = 51.7 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 24/154 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDI 116
           R ++L GP G+GK+        +   T    +  +   ++    +         V+LED+
Sbjct: 249 RGLLLHGPPGTGKTHTVRYLMGRLPDTTVIILTGTAMKLVGKAAELARRLQPSVVVLEDV 308

Query: 117 DLLDFN-------DTQLFHIINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           DL+  +          LF +++++       D + L+T           L D   R+   
Sbjct: 309 DLIAQDRSYGPMVQPLLFTLLDAMDGVGGDADVTFLLTTNRA-SELEKALADRPGRVD-- 365

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
             V+I LPD    E ++      R + +   L  
Sbjct: 366 LAVEIPLPDAAGREALL--RLYARGLKLTADLGP 397


>gi|149174465|ref|ZP_01853091.1| chromosomal replication initiation protein [Planctomyces maris DSM
           8797]
 gi|148846575|gb|EDL60912.1| chromosomal replication initiation protein [Planctomyces maris DSM
           8797]
          Length = 342

 Score = 51.7 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 23/204 (11%)

Query: 65  RVVILVGPSGSGKSCLANI-------------WSDKSRSTRFSNIAKSLDSILIDT---- 107
            +V + GPSG GKS L N              W+  + S   +  A +  +  I      
Sbjct: 40  PLVYIYGPSGCGKSALINSLLPDYVNLHPEAEWNSMTASEFAAKYAVASKNKRIAAFQEK 99

Query: 108 ---RKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
               K ++LEDI  L+       +L   +++I +   ++++T+   P         L +R
Sbjct: 100 HRGMKLLVLEDIHSLENRTHTQGELLSTLDTILKQGGAVIVTSIKPPGELAHFQKKLINR 159

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                 V I+        +++       QI I +K  A I ++ E S      +++++  
Sbjct: 160 FHGGVCVGIAPLKYQSRLELLKFWADFEQIPIKEKELALIARQKECSPRELSAILNQLHT 219

Query: 222 LALSRGMGITRSLAAEVLKETQQC 245
           ++  +   I      E L      
Sbjct: 220 VSRIQQKRIEGRFVQEFLDGNLDP 243


>gi|145631003|ref|ZP_01786779.1| predicted ATPase [Haemophilus influenzae R3021]
 gi|144983470|gb|EDJ90946.1| predicted ATPase [Haemophilus influenzae R3021]
          Length = 453

 Score = 51.7 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
                 G  I R+L  EVL E Q 
Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245


>gi|326382066|ref|ZP_08203759.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199492|gb|EGD56673.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 435

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ +A + ++++    F  ++ +   +  D RK  L           T L
Sbjct: 53  MILWGPPGCGKTTIARLLAEQTD-LAFEPLSATFSGVA-DLRKVFLAAQKRREVGQGTLL 110

Query: 127 F----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N           +  + +L+  T              L SR     V  +  
Sbjct: 111 FVDEVHRFNRAQQDSFLPYVEDGTIVLVGATTENPSFELNAA---LLSR---CQVFVLKR 164

Query: 173 PDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            D+  L  +I +      R + + +     ++   +    +   LV+++ +++
Sbjct: 165 LDEAALTTLIGRAESLLRRALPLSEDGRQALIAMADGDGRYLLNLVEQLQHVS 217


>gi|169825619|ref|YP_001695777.1| DnaA [Lysinibacillus sphaericus C3-41]
 gi|168990107|gb|ACA37647.1| DnaA [Lysinibacillus sphaericus C3-41]
          Length = 146

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 44/131 (33%), Gaps = 28/131 (21%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSL 100
            +++  A       P+       + G  G GK+ L +            +      ++  
Sbjct: 12  AASLAVAEA-----PAKAYNPFFIYGGVGLGKTHLMHAIGHYVLEHNPNAKVVYLSSEKF 66

Query: 101 DSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLM 142
            +  I++ +                +L++DI  L   +    + FH  N++H+    +++
Sbjct: 67  TNEFINSIRDNKALDFRNKYRNVDVLLIDDIQFLAGKESTQEEFFHTFNTLHEESKQIVI 126

Query: 143 TARTFPVSWGV 153
           ++   P     
Sbjct: 127 SSDRPPKEIPT 137


>gi|260582200|ref|ZP_05849994.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127]
 gi|260094832|gb|EEW78726.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127]
          Length = 446

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223
                 +E+V+ +   D  R      + +++ L   + + +      A   ++ M ++A 
Sbjct: 164 SLTTAEIEQVLQQAIEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAE 223

Query: 224 -LSRGMGITRSLAAEVLKETQQ 244
               G  I R+L  EVL E Q 
Sbjct: 224 ETENGKKIDRTLLKEVLGERQA 245


>gi|313678135|ref|YP_004055875.1| chromosomal replication initiator protein dnaA [Mycoplasma bovis
           PG45]
 gi|312950805|gb|ADR25400.1| chromosomal replication initiator protein dnaA [Mycoplasma bovis
           PG45]
          Length = 466

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 88/243 (36%), Gaps = 41/243 (16%)

Query: 40  RDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS------- 88
            D+ +  +  ++A+R+    +D         + + G SG GK+ L N   ++        
Sbjct: 126 FDNYVEGNFNKEAIRIAKLIVDGEED--YNPIFIYGKSGIGKTHLLNAICNEFLKKDVTV 183

Query: 89  ---RSTRFSNIAKSLDSILIDTRKPVLL----EDIDLLDFND-------------TQLFH 128
               +  F+           D RK   +    ++ D++ F+D               +F+
Sbjct: 184 KYINANSFTRDISYFLQEN-DQRKLKQIRNHFDNADIVMFDDFQSYGIGNKKATIELIFN 242

Query: 129 IINSIHQYDSSLLMTARTFPVSW-GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
           I++S      + ++ +     S        L SRL     + I  P    L K++  M  
Sbjct: 243 ILDSRINQKRTTIICSDRPIYSLQNSFDARLISRLSMGLQLSIDEPQKADLLKILDYMIN 302

Query: 188 DRQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM---DNLALSRGMGITRSLAAEVLKE 241
             ++     +     +IV+    S+      ++++   ++  +      T ++   +LK+
Sbjct: 303 INKMTPELWEDDAKIFIVKNHANSIRSLIGAINRLRFYNSEIVKTNSRYTLAIVNSILKD 362

Query: 242 TQQ 244
            QQ
Sbjct: 363 IQQ 365


>gi|126458632|ref|YP_001054910.1| replication factor C large subunit [Pyrobaculum calidifontis JCM
           11548]
 gi|158513487|sp|A3MS27|RFCL_PYRCJ RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|126248353|gb|ABO07444.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis JCM
           11548]
          Length = 421

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 32/189 (16%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDK----------------SRSTRFSNIAKSLDSILIDT 107
           +R V+L GP G GK+ L +  + +                 R  +         S+    
Sbjct: 56  ARAVLLWGPPGIGKTTLVHALAKEIGYELVELNASDVRTGERIRQVVGRGLREASLFGYA 115

Query: 108 RKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTF--PVSWGVCLPDLCSRLK 163
            K VL +++D L   +    L  I+N I      +++TA     P      L D+     
Sbjct: 116 GKIVLFDEVDGLHVKEDLGGLEAILNLIETAKVPIVLTANNPFDPKLRP--LRDI----- 168

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            + VV +    +D + +V+ ++ A      +++    + +    S       ++ +  L 
Sbjct: 169 -SLVVGLKRLSEDEVVEVLKRICASEGAKCEEEALRSLAKS---SYGDLRAAINDL-QLY 223

Query: 224 LSRGMGITR 232
           L+    +T 
Sbjct: 224 LAGRKVLTV 232


>gi|224079924|ref|XP_002305974.1| predicted protein [Populus trichocarpa]
 gi|222848938|gb|EEE86485.1| predicted protein [Populus trichocarpa]
          Length = 556

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 44/214 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 302 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKSSP 361

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        +++ A   P +    L 
Sbjct: 362 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESEMKVVVIAATNRPEALDPALC 421

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK--KLAAYIVQRMERSLVFA 212
            P   SR      V +  PD++   K++      R + ID+   L   +V  +    V A
Sbjct: 422 RPGRFSR-----KVVVGEPDEEGRRKILAVHL--RGVPIDEDADLICNLVASLTPGFVGA 474

Query: 213 EKLVDKMDNLALSRGMG----ITRSLAAEVLKET 242
             L + ++  AL         +TR    E ++  
Sbjct: 475 -DLANIINEAALLAARRGGDIVTREDVMEAIERA 507


>gi|126664804|ref|ZP_01735788.1| putative transposase [Marinobacter sp. ELB17]
 gi|126664928|ref|ZP_01735911.1| putative transposase [Marinobacter sp. ELB17]
 gi|126665885|ref|ZP_01736866.1| putative transposase [Marinobacter sp. ELB17]
 gi|126667106|ref|ZP_01738081.1| putative transposase [Marinobacter sp. ELB17]
 gi|126667676|ref|ZP_01738644.1| putative transposase [Marinobacter sp. ELB17]
 gi|126668381|ref|ZP_01739339.1| putative transposase [Marinobacter sp. ELB17]
 gi|126668496|ref|ZP_01739451.1| putative transposase [Marinobacter sp. ELB17]
 gi|126668544|ref|ZP_01739499.1| putative transposase [Marinobacter sp. ELB17]
 gi|126668669|ref|ZP_01739620.1| putative transposase [Marinobacter sp. ELB17]
 gi|126669137|ref|ZP_01740065.1| putative transposase [Marinobacter sp. ELB17]
 gi|126626407|gb|EAZ97076.1| putative transposase [Marinobacter sp. ELB17]
 gi|126626847|gb|EAZ97493.1| putative transposase [Marinobacter sp. ELB17]
 gi|126627007|gb|EAZ97649.1| putative transposase [Marinobacter sp. ELB17]
 gi|126627055|gb|EAZ97697.1| putative transposase [Marinobacter sp. ELB17]
 gi|126627197|gb|EAZ97836.1| putative transposase [Marinobacter sp. ELB17]
 gi|126627779|gb|EAZ98408.1| putative transposase [Marinobacter sp. ELB17]
 gi|126628512|gb|EAZ99134.1| putative transposase [Marinobacter sp. ELB17]
 gi|126629819|gb|EBA00436.1| putative transposase [Marinobacter sp. ELB17]
 gi|126630298|gb|EBA00913.1| putative transposase [Marinobacter sp. ELB17]
 gi|126631130|gb|EBA01744.1| putative transposase [Marinobacter sp. ELB17]
          Length = 251

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 25/134 (18%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKS 99
                A+  +     W      V+L+GPSG+GK+ +AN    +      R   F  IA  
Sbjct: 81  PCN-TALARLQQDSDWAHHADNVLLIGPSGTGKTHIANALGHQLTEQGVRCKLFPAIALV 139

Query: 100 -------------LDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143
                             +D  + V+++DI  +   D +   LF  I   ++   SL++T
Sbjct: 140 QHLQQAKRDLDLMTAMTRLDKYRVVIIDDIGYVKKTDAETQVLFEFIAHRYESG-SLIVT 198

Query: 144 ARTFPVSWGVCLPD 157
           A      W    PD
Sbjct: 199 ANQPFSEWDQIFPD 212


>gi|168701195|ref|ZP_02733472.1| recombination factor protein RarA [Gemmata obscuriglobus UQM 2246]
          Length = 449

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 34/177 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +I  GP G GK+ LA++ +  ++S        +   K +  +L + R    LE++   
Sbjct: 53  NSLIFYGPPGCGKTALAHVIAKHTKSRFKPLNAVAAGTKDVRELLAEARGH--LEEL--- 107

Query: 120 DFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
               T LF    H  N           +    +L+ A T    + +  P L SR   + +
Sbjct: 108 -GERTILFLDEIHRFNRAQQDVLLPDVEDGVIILIGATTQNPFFAINTP-LLSR---SQI 162

Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
            +      D +  ++++  +D  R +      I     A++V+  +     A   ++
Sbjct: 163 FRFEPLSRDDVRTLLLRAVSDTERGLGKLNVTITDDALAFLVEVCDGDARRALTALE 219


>gi|66934627|gb|AAY58902.1| putative CDC48/ATPase [Hyaloperonospora parasitica]
          Length = 804

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 35/171 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 232 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 291

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + Q  S +++ A   P S    
Sbjct: 292 APAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKQRASVVVIGATNRPNSMD-- 349

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
            P L  R  +    + I +PD++   ++       R + +D  +   ++ R
Sbjct: 350 -PALR-RFGRFDREIDIGVPDENGRLEIF--RIHTRNMKLDDDVDPELIAR 396



 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D    
Sbjct: 505 PSKGVLFYGPPGCGKTLLAKAVANECQANFISIKGPELLTMWFGESEANVREVFDKARG 563


>gi|296108730|ref|YP_003615679.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME]
 gi|295433544|gb|ADG12715.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME]
          Length = 903

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 57/231 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+LVGP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 212 PPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEEN 271

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 272 APSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPDALD-- 329

Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI--VQRM---- 205
            P L    R     V  I +PD +  ++++      R + + + +   Y+  V       
Sbjct: 330 -PALRRPGRFDREIV--IGVPDREGRKEILQ--IHTRNMPLAEDVDLDYLADVTHGFVGA 384

Query: 206 -------ERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEVLKETQ 243
                  E ++    +++  +D  A            +T     E LK+ +
Sbjct: 385 DLAALCKEAAMRALRRVLPDIDLEAEEIPKEVLDNLKVTMDDFKEALKDVE 435



 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   ++++ +   S
Sbjct: 485 PPKGVLLFGPPGTGKTLLAKAVANEAGANFIS 516


>gi|147677387|ref|YP_001211602.1| recombination factor protein RarA [Pelotomaculum thermopropionicum
           SI]
 gi|146273484|dbj|BAF59233.1| ATPase [Pelotomaculum thermopropionicum SI]
          Length = 440

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 75/201 (37%), Gaps = 35/201 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
            I  GP G+GK+ LA+I +  +R+              +  ++ ++R+ + L +   + F
Sbjct: 55  AIFFGPPGTGKTTLASIIAGMTRAHFETINAVMAGVGDIKRVVEESRERLALYNQKTILF 114

Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            D    H  N           +    +++ + T    + V  P L SR   + + +    
Sbjct: 115 IDEI--HRFNRTQQDALLPFVENGQIIMIGSTTENPMFAVSRP-LLSR---SQLYRFEPL 168

Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            D+ + +++ +   D  R +      +  +   ++          A   ++ ++   L+ 
Sbjct: 169 SDEAVRRILTRALLDEERGLAGYRAEVAGEALDHLAAVAN---GDARAALNALELAVLAT 225

Query: 227 G------MGITRSLAAEVLKE 241
                    I+ + A E +++
Sbjct: 226 PPGEDGIRRISLAAAEEAVQK 246


>gi|269114778|ref|YP_003302541.1| Chromosomal replication initiator protein [Mycoplasma hominis]
 gi|268322403|emb|CAX37138.1| Chromosomal replication initiator protein [Mycoplasma hominis ATCC
           23114]
          Length = 463

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 71/212 (33%), Gaps = 30/212 (14%)

Query: 38  ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++ DD  +      A++    I +        + +   SG GK+ L +   ++      S
Sbjct: 125 LTFDDYAIGKFNNMALKAAKAICNSEKILFSPLFIHASSGLGKTHLLHAIGNELLKHGRS 184

Query: 95  NIAKSLDSIL---------------------IDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
            +  + DS+                      + +   ++ +D+      D+ L  + N I
Sbjct: 185 ALYINPDSLTRRLVEQLKSKNQEQINKIIDELMSYDCLMFDDVQQYGNRDSTLNVLFNII 244

Query: 134 HQ---YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
                 D  ++      P   G       +R      V+I  P+ + +  ++     +  
Sbjct: 245 DNMIMNDKQIIFCGDKKPDDLGGFEQRFITRFNGGLTVEILKPELNDVINILKFKLQENG 304

Query: 191 IFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219
           I     +++   +I +    S+   E  ++++
Sbjct: 305 INPELWEEESLKFIARNFSSSIRNIEGAINRI 336


>gi|62177288|gb|AAX70927.1| chromosomal replication initiator protein DnaA [Mycoplasma hominis
           ATCC 23114]
          Length = 463

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 71/212 (33%), Gaps = 30/212 (14%)

Query: 38  ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++ DD  +      A++    I +        + +   SG GK+ L +   ++      S
Sbjct: 125 LTFDDYAIGKFNNMALKAAKAICNSEKILFSPLFIHASSGLGKTHLLHAIGNELLKHGRS 184

Query: 95  NIAKSLDSIL---------------------IDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
            +  + DS+                      + +   ++ +D+      D+ L  + N I
Sbjct: 185 ALYINPDSLTRRLVEQLKSKNQEQINKIIDELMSYDCLMFDDVQQYGNRDSTLNVLFNII 244

Query: 134 HQ---YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
                 D  ++      P   G       +R      V+I  P+ + +  ++     +  
Sbjct: 245 DNMIMNDKQIIFCGDKKPDDLGGFEQRFITRFNGGLTVEILKPELNDVINILKFKLQENG 304

Query: 191 IFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219
           I     +++   +I +    S+   E  ++++
Sbjct: 305 INPELWEEESLKFIARNFSSSIRNIEGAINRI 336


>gi|309973263|gb|ADO96464.1| Recombination factor RarA [Haemophilus influenzae R2846]
          Length = 446

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
                 G  I R+L  EVL E Q 
Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245


>gi|159041491|ref|YP_001540743.1| replication factor C large subunit [Caldivirga maquilingensis
           IC-167]
 gi|157920326|gb|ABW01753.1| AAA ATPase central domain protein [Caldivirga maquilingensis
           IC-167]
          Length = 418

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 73/198 (36%), Gaps = 30/198 (15%)

Query: 54  RLIDSWPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NI 96
             I  W S    R ++L GP G+GK+ + +  +       +                   
Sbjct: 32  DWISKWLSGKEKRAILLSGPPGTGKTTMVHALAYDYGLELYEMNASDVRTASRIRETIGK 91

Query: 97  AKSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           A +  S+     K VL +++D ++   +   ++ I++ + +    + MTA      W   
Sbjct: 92  ALTQGSLFGFRGKLVLFDEVDGINVRADQGGIYEIVDIVKEAKVPIAMTANDP---WDPK 148

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L  L        VV++    +  + +++ ++    ++  ++     I    E S+     
Sbjct: 149 LRPLR---DICVVVQVKPLKNRDIIEMLRRICNAEKVKCEEDALRLIA---ESSMGDMRS 202

Query: 215 LVDKMDNLALSRGMGITR 232
            ++  D   ++    +TR
Sbjct: 203 AIN--DLQTVAETGPVTR 218


>gi|296123644|ref|YP_003631422.1| replication initiation factor DnaA protein [Planctomyces
           limnophilus DSM 3776]
 gi|296015984|gb|ADG69223.1| Chromosomal replication initiator DnaA domain protein [Planctomyces
           limnophilus DSM 3776]
          Length = 353

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 32/233 (13%)

Query: 39  SRDDLLVHSAI----EQAVRLIDSWPS----WPSRVVILVGPSGSGKSCLANIWSDK--- 87
           S++  LV          A+R+++   S     P R+ ++ GP G GK+ L    + +   
Sbjct: 15  SQEPFLVLPENHFAYTAAMRIVEPMGSMAVQGP-RITLVYGPKGGGKTHLVRHVARETLK 73

Query: 88  --SRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFN---DTQLF 127
             +R       A      L++                 + ++L+  D L        QL 
Sbjct: 74  RLARGKLLLANAHEFCQWLLEAHDQKAVVEAHEKLRSLEVLILDGFDELQDRADLQQQLL 133

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            +I+ +      +L+ +   P         L +R        +  P  D  +++ +    
Sbjct: 134 CVIDLMADAGGHILIVSEKAPGELRGLSTRLVNRCHGGLCALLKWPGTDSRKQLALHFAH 193

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            + + + +  A  + + +  S       + +++ +A         SL    L+
Sbjct: 194 QKHLPMSEAAALELAENLAGSPAQLIIAIQQIELMARREHSTADLSLIKRYLQ 246


>gi|78222159|ref|YP_383906.1| recombination factor protein RarA [Geobacter metallireducens GS-15]
 gi|78193414|gb|ABB31181.1| Recombination protein MgsA [Geobacter metallireducens GS-15]
          Length = 441

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 32/194 (16%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP GSGK+ LA I ++  KS    FS I   +  I    ++    E+      ++T
Sbjct: 56  LIFWGPPGSGKTTLARIIANATKSHFIFFSAILSGVKEIREIVKEA---ENERKYRGSNT 112

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     ++ A T   S+ V  P L SR     V+ ++ 
Sbjct: 113 ILFVDEIHRFNKSQQDAFLPYVEKGVFTIIGATTENPSFEVIAP-LLSR---CKVLVLNS 168

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224
             D+ +  ++ +   D       R + +  +  A++    E++   A   ++ ++  A L
Sbjct: 169 LTDEEVTTILRRALVDPERGLGNRSLAVSDEALAFMA---EQAQGDARIALNTLETAARL 225

Query: 225 SRGMGITRSLAAEV 238
           ++   I    A E 
Sbjct: 226 AKNGEIDLDSAREA 239


>gi|329123991|ref|ZP_08252538.1| replication-associated recombination protein A [Haemophilus
           aegyptius ATCC 11116]
 gi|327467416|gb|EGF12914.1| replication-associated recombination protein A [Haemophilus
           aegyptius ATCC 11116]
          Length = 446

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
                 G  I R+L  EVL E Q 
Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245


>gi|297565423|ref|YP_003684395.1| AAA ATPase central domain-containing protein [Meiothermus silvanus
           DSM 9946]
 gi|296849872|gb|ADH62887.1| AAA ATPase central domain protein [Meiothermus silvanus DSM 9946]
          Length = 425

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 22/185 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP GSGK+ LA + ++       +  A +     I        E   L+ F D   
Sbjct: 47  LILWGPPGSGKTTLARLLAEGVGQEMLALSAVNAGVREIKEAVARAREVGGLVLFLDEI- 105

Query: 127 FHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            H  N           +     L+ A T   S+ V  P L SR   A V  +   + + +
Sbjct: 106 -HRFNKSQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARVYVLRPLEPEEI 160

Query: 179 EKVIVKMFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            +++ +          +  + K    + Q    S+    + +  ++  A   G  IT   
Sbjct: 161 RQLLERALQHPEGLLGVEAEPKALELLAQA---SMGDVRRALSALELAATLAG-KITLES 216

Query: 235 AAEVL 239
             E L
Sbjct: 217 VKEGL 221


>gi|291484339|dbj|BAI85414.1| IS643-like transposase [Bacillus subtilis subsp. natto BEST195]
 gi|291485047|dbj|BAI86122.1| IS643-like transposase [Bacillus subtilis subsp. natto BEST195]
 gi|291486646|dbj|BAI87721.1| IS643-like transposase [Bacillus subtilis subsp. natto BEST195]
          Length = 252

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 24/115 (20%)

Query: 61  SWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104
           +W  +   +IL+GP G GK+ LA     +S    F+    ++  ++              
Sbjct: 96  NWLEQQYNLILLGPPGVGKTFLAIGLGIESIHRGFNVYFVTMGELIHLLKTEEFLNKSKV 155

Query: 105 ----IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
               +     V+++D+  +  +  +    FH+IN +++  SS+++T+   P  WG
Sbjct: 156 QLKRLRGADLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEQWG 209


>gi|229137172|ref|ZP_04265791.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus
           BDRD-ST26]
 gi|228646344|gb|EEL02559.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus
           BDRD-ST26]
          Length = 196

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  +L       
Sbjct: 32  AVKYVKNFKEWNGESLLLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 91

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 92  NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 151

Query: 148 PVSWG 152
           P    
Sbjct: 152 PKELK 156


>gi|126665703|ref|ZP_01736684.1| putative transposase [Marinobacter sp. ELB17]
 gi|126629637|gb|EBA00254.1| putative transposase [Marinobacter sp. ELB17]
          Length = 251

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 25/134 (18%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKS 99
                A+  +     W      V+L+GPSG+GK+ +AN    +      R   F  IA  
Sbjct: 81  PCN-TALARLQQDSDWAHHADNVLLIGPSGTGKTHIANALGHQLTEQGVRCKLFPAIALV 139

Query: 100 -------------LDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143
                             +D  + ++++DI  +   D +   LF  I   ++   SL++T
Sbjct: 140 QHLQQAKRDLDLMTAMTRLDKYRVIIIDDIGYVKKTDAETQVLFEFIAHRYESG-SLIVT 198

Query: 144 ARTFPVSWGVCLPD 157
           A      W    PD
Sbjct: 199 ANQPFSEWDQIFPD 212


>gi|303326761|ref|ZP_07357203.1| ATPase, AAA family [Desulfovibrio sp. 3_1_syn3]
 gi|302862749|gb|EFL85681.1| ATPase, AAA family [Desulfovibrio sp. 3_1_syn3]
          Length = 409

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 65/162 (40%), Gaps = 14/162 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI--LIDTRKPVLLEDIDLLD 120
             ++  GP G GKS LA + +  +     R S     L  +   +   + ++L+++    
Sbjct: 39  PSLLFFGPPGCGKSTLALLLAKSTGKKYLRLSAPEAGLQHLRRALAGVEILVLDELHRFS 98

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                 F  +  +   + +LL T    P  + V    L SRL    V+++       L +
Sbjct: 99  KAQQDFF--LPLVESGELTLLATTTENPS-FSVTRQ-LLSRL---HVLRLRPLGRAELMQ 151

Query: 181 VIVKMFADRQIFIDKKLAAYI--VQRME-RSLVFAEKLVDKM 219
           +  +   D Q+ ++ ++   +  V   + RSL+   + V  +
Sbjct: 152 LARRGAQDLQVELNDEVLDLLAGVAHGDARSLLNLVEYVAAL 193


>gi|329766196|ref|ZP_08257754.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137255|gb|EGG41533.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 715

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 33/159 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK----P 110
           V+L GP G+GK+ LA   + ++ +   S               + L  I     +     
Sbjct: 216 VLLYGPPGTGKTLLAKAVAGETSAHFISLSGPEIMGKYYGESEEKLREIFKQAEENSPSI 275

Query: 111 VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           V +++ID +    ++          +QL  +++ +      +++ A   P S     P L
Sbjct: 276 VFIDEIDSIAPKRDEVSGEVEKRIVSQLLTLMDGMKSRGKVVVIAATNRPDSID---PAL 332

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               +    ++I +PDD+   +++      R + ID+K+
Sbjct: 333 RRPGRFDREIEIGIPDDEGRHEIL--SIHTRGMPIDEKV 369


>gi|310640104|ref|YP_003944862.1| aaa atpase central domain protein [Paenibacillus polymyxa SC2]
 gi|309245054|gb|ADO54621.1| AAA ATPase central domain protein [Paenibacillus polymyxa SC2]
          Length = 442

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 71/194 (36%), Gaps = 32/194 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
            +I++        +I  GP G GK+ LA I +++++S      A +     I   + V+ 
Sbjct: 44  EMIENDQ---VSSMIFWGPPGVGKTTLAKIIANQTQSKFIDFSAVTSG---IKDIRSVMK 97

Query: 114 EDIDLLDFNDTQLF-----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCS 160
           E        +  L      H  N           +  S +L+ A T   S+ V    L S
Sbjct: 98  EAEGNRQLGEKTLLFIDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEVNSA-LLS 156

Query: 161 RLKAATVVKISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           R   + V  +   +   + +++ K       F ++ I I+  + + I +  +     A  
Sbjct: 157 R---SKVFVLHPLNHADILELLQKALANPKGFNNQSIEIEDGVLSAIAEYCD---GDARV 210

Query: 215 LVDKMDNLALSRGM 228
            ++ ++   L    
Sbjct: 211 ALNTLEMAVLHGKK 224


>gi|330833937|ref|YP_004408665.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
 gi|329566076|gb|AEB94181.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
          Length = 753

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 76/224 (33%), Gaps = 55/224 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G GK+ LA   +++  +   S                 + +  D    +
Sbjct: 210 PPKGVLLYGPPGVGKTLLARALANEIGAYFVSINGPEIMSKFYGESEQRLREIFDDADKN 269

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS--WG 152
               + +++ID +  +              QL  +++ I      +++ A   P +    
Sbjct: 270 APSIIFIDEIDAIAPSREEVTGEVEKRVVSQLLTLMDGIKGRGRIVVIGATNRPNAVDQA 329

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM------- 205
           +  P    R      ++I  PD    ++++      R + +   +   ++  M       
Sbjct: 330 LRRP---GRFD--REIEIRPPDTKARKEILQVH--TRNMPLSDDVNLNLIAEMTYGYTGA 382

Query: 206 -------ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                  E ++    + ++  D   L         L+ EVLKE 
Sbjct: 383 DIAALAKEAAMYALRRFINSGDRKKLLEQDR----LSPEVLKEL 422



 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 49  IEQAVRLIDSWPS-------WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           + +AV     +P         P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 466 LREAVEWPMRFPDVFNKTGIRPPKGVLLFGPPGTGKTMLAKAVATESGANFIA 518


>gi|170579214|ref|XP_001894730.1| ATPase, AAA family protein [Brugia malayi]
 gi|158598563|gb|EDP36432.1| ATPase, AAA family protein [Brugia malayi]
          Length = 700

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 72/201 (35%), Gaps = 36/201 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR-- 108
           P   ++L GP G  K+ +A   + +SR            S       +++  +    R  
Sbjct: 468 PPSGILLYGPPGCSKTLIARAIASQSRMNFLAVKGPELFSKWVGESERAVRELFRRARQV 527

Query: 109 KPVLL--EDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            P ++  ++ID +  N              TQL   ++ + +    +++ A   P     
Sbjct: 528 APAIIFFDEIDAVGANRGDRNESHVGERVLTQLLTELDGLEEKGDVMVLAATNRPDRLDS 587

Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVF 211
            L  L   R      + + LPD++   +++       Q+ ID  +   I +R E  S   
Sbjct: 588 AL--LRPGRFN--LTIHVPLPDEETRLEILRIRLNQMQVTIDLDVED-ISKRTEGFSGAE 642

Query: 212 AEKLVDKMDNLALSRGMGITR 232
             +L D+    AL       R
Sbjct: 643 VVELCDQAVREALLENRDANR 663


>gi|145641740|ref|ZP_01797316.1| formyltetrahydrofolate deformylase [Haemophilus influenzae R3021]
 gi|145273554|gb|EDK13424.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.4-21]
          Length = 446

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
                 G  I R+L  EVL E Q 
Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245


>gi|121535958|ref|ZP_01667752.1| AAA ATPase, central domain protein [Thermosinus carboxydivorans
           Nor1]
 gi|121305450|gb|EAX46398.1| AAA ATPase, central domain protein [Thermosinus carboxydivorans
           Nor1]
          Length = 446

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 77/199 (38%), Gaps = 29/199 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++L GP G+GK+ LA + ++ +        A +     +  +     E +  L    T
Sbjct: 53  PSLLLFGPPGTGKTTLAYLIANAAGCHFEKLNAVAAGVADVRKQVEAAQERL-KLYGQRT 111

Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V  P L SR++   + K+  
Sbjct: 112 ILFIDEIHRFNKGQQDALLPFVEDGTIILIGATTENPYFEVNSP-LLSRMR---ITKLQP 167

Query: 173 PDDDFLEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
             ++ + +++V+         DR++  D+    +   R+  ++      ++ ++  A   
Sbjct: 168 LSEEEIVQILVRALTDERGLGDRRLAWDEGALGHYCPRLPAAMPRI--ALNILEQAAWQL 225

Query: 227 ----GMGITRSLAAEVLKE 241
                  IT ++   V+ E
Sbjct: 226 EETGEGRITAAVLETVMGE 244


>gi|298246048|ref|ZP_06969854.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297553529|gb|EFH87394.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 481

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 32/199 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           ++  GP GSGK+ L+   +  + +        S  S  +   + V+ E   L  F+  + 
Sbjct: 80  MLFWGPPGSGKTTLSEAIARHADARFV---TLSATSAGVADLRRVVDEAAKLRQFSQRRT 136

Query: 126 -LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ V    L SR     V  +  
Sbjct: 137 ILFIDEIHRFNKAQQDAVLPHVERGTVTLIGATTENPSFEVNSA-LLSR---CRVFVLKA 192

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            D+  + +++ +   D        QI  D++    I          A  +++      +S
Sbjct: 193 LDEAQIVRILQRALEDSERGLGQYQITSDEEALQAIAIFASGDARTALNVLELAAQGVMS 252

Query: 226 RG----MGITRSLAAEVLK 240
            G      IT +L  EV++
Sbjct: 253 GGGTDERHITLALVEEVMQ 271


>gi|284048963|ref|YP_003399302.1| AAA ATPase central domain protein [Acidaminococcus fermentans DSM
           20731]
 gi|283953184|gb|ADB47987.1| AAA ATPase central domain protein [Acidaminococcus fermentans DSM
           20731]
          Length = 439

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 74/196 (37%), Gaps = 36/196 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I +  +R+    FS +   +  I    ++     D +      T
Sbjct: 52  MIFWGPPGVGKTTLAQIIAHTTRANFINFSAVTSGIKEIRTVMQRA----DENRRFGART 107

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ V    L SR     V  +  
Sbjct: 108 IVFVDEIHRFNRAQQDAFLPFVEKGAIILIGATTENPSFEVNGA-LLSR---CKVFVLKA 163

Query: 173 PDDDFLEKVIVKMFAD-RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            D+  ++ ++ +   D R      + + ++   ++  R+  S   A   +  ++ + L+ 
Sbjct: 164 LDEKAIKGILKRALTDPRGFGKETVHLAEEDLTFLA-RL--SNGDARSALATLEMVVLNG 220

Query: 227 GMG-----ITRSLAAE 237
                   ++R L  +
Sbjct: 221 ERKPDGIHVSRELIEQ 236


>gi|332638473|ref|ZP_08417336.1| recombination factor protein RarA [Weissella cibaria KACC 11862]
          Length = 428

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDSKKDLQIVAEEAKMSGTVVLLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      + LP + SR   + + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIVLIGATTENPYLSI-LPAIRSR---SQIFEVQPLSE 152

Query: 176 DFLEKVIVKMF--ADRQI 191
           D ++  I +     DR +
Sbjct: 153 DDMKIAIQRALTDKDRGL 170


>gi|295695374|ref|YP_003588612.1| Chromosomal replication initiator DnaA [Bacillus tusciae DSM 2912]
 gi|295410976|gb|ADG05468.1| Chromosomal replication initiator DnaA [Bacillus tusciae DSM 2912]
          Length = 324

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 65/208 (31%), Gaps = 55/208 (26%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
           +FP        DL      + AV   ++  P  P + + + GP G GK+ L     ++  
Sbjct: 127 NFPEEQKRRFPDLY-----KAAVEFAETVEPGVPMKGLYIFGPPGVGKTHLLLAIVNRLE 181

Query: 90  STRFSNIAKSLDSILIDTRKPV--------LLE---DIDLLDFND-----------TQLF 127
             R   +    D I    R  +        ++E    + +L  ++            ++F
Sbjct: 182 ERRVPTLFVRADMIFDRLRSRIASGQDVEPIVEAYCRVPVLAIDEFAQERPSDFTLEKMF 241

Query: 128 HIINSIHQYDSSLLMTARTFPV--------SWGVCLPDLCSRLKAA-TVVKISLPDDDFL 178
            IIN+        L T+   P            V +  + SR+        +  PD    
Sbjct: 242 RIINARFTTARPTLFTSNYPPPEIYGRVARELEVLVDVMRSRIVQMNRHGHLDGPD---- 297

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRME 206
                     RQ         ++  RME
Sbjct: 298 -------ARLRQ-------IDWLGPRME 311


>gi|229845598|ref|ZP_04465724.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1]
 gi|229811465|gb|EEP47168.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1]
          Length = 446

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
                 G  I R+L  EVL E Q 
Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245


>gi|225451905|ref|XP_002279064.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 617

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 40/213 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 363 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARVRDLFNVARKCAP 422

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        +++ A   P +    L 
Sbjct: 423 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDMKVIVIAATNRPEALDAALC 482

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V +  PD++   K++     +  +  D +L   +V  + +  V A  
Sbjct: 483 RPGRFSR-----KVLVGEPDEEGRRKILAIHLREVPLEEDTRLICNLVASLTQGFVGA-D 536

Query: 215 LVDKMDNLALSRGMG----ITRSLAAEVLKETQ 243
           L + ++  AL  G      +TR    E ++  +
Sbjct: 537 LANIVNEAALLAGRRGGESVTREDIMEAIERAR 569


>gi|145637468|ref|ZP_01793126.1| predicted ATPase [Haemophilus influenzae PittHH]
 gi|145269274|gb|EDK09219.1| predicted ATPase [Haemophilus influenzae PittHH]
          Length = 446

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  S + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGSVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
                 G  I R+L  EVL E Q 
Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245


>gi|254427548|ref|ZP_05041255.1| ATPase, AAA family, putative [Alcanivorax sp. DG881]
 gi|196193717|gb|EDX88676.1| ATPase, AAA family, putative [Alcanivorax sp. DG881]
          Length = 443

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 25/195 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA I +    +        ++ S + D R  V    I L     T L
Sbjct: 53  MILWGPPGTGKTTLALIMAQTVDAAFI--TLSAVLSGVKDIRAAVEQAQIRLGQGRRTVL 110

Query: 127 F----HIINSIHQYD----------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q            + +  T              L SR   A V ++  
Sbjct: 111 FVDEVHRFNKAQQDAFLPHVEEGTITFIGATTENPSFELNNA---LLSR---ARVYRLRA 164

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
              D L  ++ +   D     + +D      ++   +        +++   +LA      
Sbjct: 165 LAPDDLSGLLGRALQDPALNGMQLDADARELLLNYADGDARRLLNMLEVAADLADQDAPK 224

Query: 230 ITRSLAAEVLKETQQ 244
           I   L  EVL++  +
Sbjct: 225 IDAELMREVLRDAVR 239


>gi|145632980|ref|ZP_01788713.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655]
 gi|144986636|gb|EDJ93202.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655]
          Length = 446

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223
                 +E+V+ +   D  R      + +++ L   + + +      A   ++ M ++A 
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAE 223

Query: 224 -LSRGMGITRSLAAEVLKETQQ 244
               G  I R+L  EVL E Q 
Sbjct: 224 ETENGKKIDRTLLKEVLGERQA 245


>gi|94987229|ref|YP_595162.1| DNA replication initiation ATPase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731478|emb|CAJ54841.1| ATPase involved in DNA replication initiation [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 440

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 90/248 (36%), Gaps = 45/248 (18%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSA---------I---EQAVRLIDSWPSWPSRVVIL 69
           +NK  Q     P  +    D+ +++                 +  ++ +     +++++L
Sbjct: 92  QNKSTQ-----PTNISQHFDNFIINGKHSWIISIIENILCSVSENILKNTSEEITQLLVL 146

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------IDTRKPVLLE 114
            G   +GK+ L    +++       +   +    L               I +   +L++
Sbjct: 147 FGKQTTGKTHLLRAIANELSKIPSCSFKYTTTDELAFSLNKEPLFLFREHIQSHHIILID 206

Query: 115 DIDLL-DFNDTQLFH--IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           D   +  + + QL    +++        L+++    P++W V   ++ SRL+     ++ 
Sbjct: 207 DFQRVSSYPELQLELTILLDYYKDNKKILIISGTDHPLTWNVS-KEIYSRLEVGLWGELP 265

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK-------MDNLAL 224
            PD D   +   ++  +++  + K+    I Q    SL     ++ +       ++   L
Sbjct: 266 EPDLDIRFRYAQQLSKEKKYILPKEQLLIISQHC-HSLRCLSGILHRTIAHKTLLNRE-L 323

Query: 225 SRGMGITR 232
           S    IT 
Sbjct: 324 SEKELITL 331


>gi|145627717|ref|ZP_01783518.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21]
 gi|145639902|ref|ZP_01795502.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII]
 gi|144979492|gb|EDJ89151.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21]
 gi|145270993|gb|EDK10910.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII]
 gi|309751081|gb|ADO81065.1| Recombination factor RarA [Haemophilus influenzae R2866]
          Length = 446

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
                 G  I R+L  EVL E Q 
Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245


>gi|237733075|ref|ZP_04563556.1| ATPase [Mollicutes bacterium D7]
 gi|229383877|gb|EEO33968.1| ATPase [Coprobacillus sp. D7]
          Length = 440

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 29/179 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF- 121
             ++  GP G GK+ LA I ++++++    FS +   +  I    ++   ++D+      
Sbjct: 51  PSMVFWGPPGVGKTTLARIIANQTKAKFINFSAVTSGIKDIRAVMKQAQEVQDLGEKTIV 110

Query: 122 --NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
             ++    H  N           +  S +L+ A T   S+ +    L SR     V  + 
Sbjct: 111 FVDEI---HRFNKAQQDAFLPYVEQGSIILIGATTENPSFEINSA-LLSR---CKVFVLK 163

Query: 172 LPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
               D L  ++       K F D+ + ID  L  Y++     S   A   ++ ++   L
Sbjct: 164 ALTTDDLFGLLHYALISPKGFKDQNVMIDDDLL-YMIAGF--SNGDARVALNTLEMAVL 219


>gi|167756420|ref|ZP_02428547.1| hypothetical protein CLORAM_01953 [Clostridium ramosum DSM 1402]
 gi|167703828|gb|EDS18407.1| hypothetical protein CLORAM_01953 [Clostridium ramosum DSM 1402]
          Length = 444

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 29/179 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF- 121
             ++  GP G GK+ LA I ++++++    FS +   +  I    ++   ++D+      
Sbjct: 55  PSMVFWGPPGVGKTTLARIIANQTKAKFINFSAVTSGIKDIRAVMKQAQEVQDLGEKTIV 114

Query: 122 --NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
             ++    H  N           +  S +L+ A T   S+ +    L SR     V  + 
Sbjct: 115 FVDEI---HRFNKAQQDAFLPYVEQGSIILIGATTENPSFEINSA-LLSR---CKVFVLK 167

Query: 172 LPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
               D L  ++       K F D+ + ID  L  Y++     S   A   ++ ++   L
Sbjct: 168 ALTTDDLFGLLHYALISPKGFKDQNVMIDDDLL-YMIAGF--SNGDARVALNTLEMAVL 223


>gi|187250562|ref|YP_001875044.1| ATPase family protein [Elusimicrobium minutum Pei191]
 gi|186970722|gb|ACC97707.1| ATPase family protein [Elusimicrobium minutum Pei191]
          Length = 416

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 48/245 (19%)

Query: 31  SFPRCLGISR---DDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
             P    ++    DD      ++        R+I+S      +  +  GP G GK+ LA 
Sbjct: 7   DMPLAAAMAPKNLDDFAGQKHVIGPG-RMLRRMIESD---TIKSAVFFGPPGVGKTALAR 62

Query: 83  IWSDKSRSTRFSNIAKSLD--------SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH 134
             + K+ +      A +              + R    LE   L+  ++    H  N   
Sbjct: 63  FIASKTEAVTVELNAAAAGVGDIKKVIEEAKERRNDTFLEKRTLVVLDEI---HHFNKTQ 119

Query: 135 --------QYDSSLL--MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
                   +    +L  +T              L SR     V +    D   LE+++ +
Sbjct: 120 QDVLLPSVERGDIILIGLTTENPYFYINNA---LLSRFS---VFEFKPLDAKDLEQILKR 173

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEV 238
           +   ++  I K    + + +       A +L++ +D   L+          IT  +A E 
Sbjct: 174 VLKIKEAKIQKDAKDFFITQAN---GDARRLLNAVDLAILTTAKDSDGIVNITMDVAKEC 230

Query: 239 LKETQ 243
           +++  
Sbjct: 231 MQKRH 235


>gi|268537192|ref|XP_002633732.1| Hypothetical protein CBG03417 [Caenorhabditis briggsae]
 gi|187036639|emb|CAP24316.1| hypothetical protein CBG_03417 [Caenorhabditis briggsae AF16]
          Length = 840

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 75/203 (36%), Gaps = 31/203 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR----------STRFSNIAKSLDSILIDTR------ 108
           ++++L GP+G GKS LA I + ++           +   +++ K L+  +  +R      
Sbjct: 318 KMLLLSGPAGLGKSTLARIVASQAGYATIDVNASDARTVADLNKVLEGAVKTSRTLDGDQ 377

Query: 109 --KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW--GV---CLPDLCSR 161
               ++L++ID    +  +  H+I  +       +   R   +     +    L DL   
Sbjct: 378 RPACLILDEIDGTPIDTIR--HLIRCLQATGKKAV---RRPIIGICNNLYTPALRDLR-- 430

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
              A  V++S    D L K + ++     +  D      +       +  +   +     
Sbjct: 431 -GVAWCVQLSATKQDALAKRLEQICDMENLRCDLSTLRKLCDLCANDMRHSINTLQWAAV 489

Query: 222 LALSRGMGITRSLAAEVLKETQQ 244
            +      IT  L  EV+++ + 
Sbjct: 490 ASNKTKRSITMKLIHEVVEKEKG 512


>gi|258653083|ref|YP_003202239.1| SARP family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258556308|gb|ACV79250.1| transcriptional regulator, SARP family [Nakamurella multipartita
           DSM 44233]
          Length = 885

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 16/156 (10%)

Query: 65  RVVILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDI 116
           R++++ GPSGSGKS L        ++        +  A  L ++    +   + ++++  
Sbjct: 292 RILVITGPSGSGKSSLVRAGLAARFARGGHPVVITPGADPLAAVGPEPLPAGELLVVDQA 351

Query: 117 DLL-----DFNDTQLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + L     D +    F +   I  +D   L+M  R   V      PD   RL    +  +
Sbjct: 352 EELFTLTTDPDARSQF-LARLIRHHDRGPLVMVLRADRVGDLAAFPDFA-RLAERELYLL 409

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
               D  L   I        + ++  L   +V+ +E
Sbjct: 410 GPLTDAGLRAAIEGPARQAGLLLEPGLVDLLVRDVE 445


>gi|156741065|ref|YP_001431194.1| recombination factor protein RarA [Roseiflexus castenholzii DSM
           13941]
 gi|156232393|gb|ABU57176.1| AAA ATPase central domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 544

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 28/158 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP GSGK+ LA I +D + +        S  S  +   + V+ E  D L     + 
Sbjct: 60  IILWGPPGSGKTTLARIIADTTHAHF---EQLSAVSAGVADLRRVVKEAQDRLGMFQQRT 116

Query: 126 -LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ V  P L SR   A V  +  
Sbjct: 117 IVFIDEIHRFNKAQQDAILPYVEDGTIILIGATTENPSFEVN-PALRSR---ARVFVLES 172

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQ 203
             D+ +  ++ +   D  R +      +      Y++ 
Sbjct: 173 LTDEQIGVIVDRALTDAERGLGALNVLLAADARGYLIN 210


>gi|218289659|ref|ZP_03493879.1| DNA replication protein-like protein [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240309|gb|EED07492.1| DNA replication protein-like protein [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 306

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 33/159 (20%)

Query: 49  IEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106
           +  A     +W     P   + L GP G GK+ L      + +     ++    DS+   
Sbjct: 138 LRYAQEFARTWSPQEAPRAGLYLFGPPGVGKTHLMFAVFRELQRRGVPSLVVRSDSLFDH 197

Query: 107 TRKPVLL-EDIDL----------LDFND-----------TQLFHIINSIHQYDSSLLMTA 144
            R  +   ED++           L  ++            +LF IIN    +  S   T+
Sbjct: 198 MRHVIAAGEDLEPFLETLSTVPVLGVDEFAQERANEFSMEKLFRIINYRFHHKLSTWFTS 257

Query: 145 R-TFPVSWGVCLPD-------LCSR-LKAATVVKISLPD 174
             + P ++   + D       L SR +    +VK+  PD
Sbjct: 258 NFSPPDAYRRGVDDLLDTVAPLRSRVMSMCILVKMDGPD 296


>gi|296162697|ref|ZP_06845483.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1]
 gi|295887085|gb|EFG66917.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1]
          Length = 271

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 30/150 (20%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
            F F           +V  A   A+   DSW       ++L GP G GKS L +      
Sbjct: 77  TFDFGVVP-------MVSKAHVMALATGDSWLE-KGATILLFGPPGGGKSHLGSAIGHAL 128

Query: 89  RSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDTQ---LF 127
               +  +      I+                  +D    ++L+D+  +  +  +   LF
Sbjct: 129 IDAGYRVLFTRTGEIVQKLQVARQSLQLPSALAKLDRFDLIILDDLSYVRKDQAETSVLF 188

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +I +      SLL+TA      W    PD
Sbjct: 189 ELI-AERYERKSLLITANQPFSGWNDVFPD 217


>gi|229582087|ref|YP_002840486.1| replication factor C large subunit [Sulfolobus islandicus
           Y.N.15.51]
 gi|259585461|sp|C3NHF4|RFCL_SULIN RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|228012803|gb|ACP48564.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.N.15.51]
          Length = 405

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 28/170 (16%)

Query: 54  RLIDSWPSW-PSRVVIL-VGPSGSGKSCLANIWSDKSRSTR----------------FSN 95
             I+SW +  P+   +L  GP G GK+ LA   +                        + 
Sbjct: 28  EWIESWLNGKPNAKAVLLHGPPGVGKTTLAEAVAHDYNLELLEMNASDSRKLQDIKGVAE 87

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            A    SI     K +LL+++D ++  +    +  I+  I +    ++MTA      W  
Sbjct: 88  KASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDP---WNP 144

Query: 154 CLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
            L +L ++ K   + K+   P    L +++ K+    +I  D +   YI+
Sbjct: 145 ALRELRNKTKMVGLNKLGKYP----LRRLLKKICQAEKIICDDEALNYII 190


>gi|50303471|ref|XP_451677.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640809|emb|CAH02070.1| KLLA0B03234p [Kluyveromyces lactis]
          Length = 804

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 36/168 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P R ++L GP G+GK+ L    ++++ +   +    S+ S  +   +  L          
Sbjct: 303 PPRGILLHGPPGTGKTMLLRCVANETDAHILTISGPSIVSKYLGETEAALRDIFNEAKRY 362

Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                 +++ID L  N                L  +++ +       ++ A   P S   
Sbjct: 363 QPSIIFIDEIDSLAPNRANDDSGEVESRVVATLLTLMDGMDGSGRLAVVAATNRPNSID- 421

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD----RQIFIDKKL 197
             P L    +    ++IS+PD +    ++ K F+     RQ+   + +
Sbjct: 422 --PALRRPGRFDQEIEISIPDVEARHDILRKQFSRMSKQRQLLSPEDI 467


>gi|242373927|ref|ZP_04819501.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis M23864:W1]
 gi|242348481|gb|EES40083.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis M23864:W1]
          Length = 422

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 39/200 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQMVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           DD  +   + +    +DR +      +D+    Y   +   S       ++ ++   LS 
Sbjct: 152 DDHDVRIALDRAIDDSDRGLKSYHPVVDEDAMEYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 -----GMGITRSLAAEVLKE 241
                   IT   A + L++
Sbjct: 209 DEENNQRHITLDDAKDCLQK 228


>gi|297566961|ref|YP_003685933.1| Holliday junction DNA helicase RuvB [Meiothermus silvanus DSM 9946]
 gi|296851410|gb|ADH64425.1| Holliday junction DNA helicase RuvB [Meiothermus silvanus DSM 9946]
          Length = 326

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 79/206 (38%), Gaps = 30/206 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113
           P   ++L GP G GK+ LA++ +++           +        ++ +  I+    + +
Sbjct: 38  PLDHMLLFGPPGLGKTTLAHVIANELGVNIRVTSGPAIEKPGDLAAIVTNSIEEGDILFI 97

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157
           ++I  L     +  H+  ++  +   +++       +  + LP                 
Sbjct: 98  DEIHRLSRAAEE--HLYPAMEDFKIDIVIGQGPAARTLRLDLPRFTLIGATTRPGLISGP 155

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR     +  +    ++ L + +++  A   + I ++ A  I +R   ++  A++L  
Sbjct: 156 LRSRF--GIIEHLEFYTEEELAQGVMRDAALIGLAITEEAAHEIGRRSRGTMRIAKRLFR 213

Query: 218 KM-DNLALSRGMGITRSLAAEVLKET 242
           ++ D   ++    +T   A E L   
Sbjct: 214 RVRDYAEVAGEDTVTLERAREALDAL 239


>gi|189230336|ref|NP_001121492.1| Werner helicase interacting protein 1 [Xenopus (Silurana)
           tropicalis]
 gi|183985959|gb|AAI66299.1| LOC100158593 protein [Xenopus (Silurana) tropicalis]
          Length = 577

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 28/148 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  +       +  S  S      + V+         N+ 
Sbjct: 190 PSIILWGPPGCGKTTLAHIIAKNTHKNSCRFVTLSATSASTSDVREVI-----KQAQNEQ 244

Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +LF           H  N   Q          +  L+ A T   S+ V    L SR    
Sbjct: 245 RLFKRKTILFVDEIHRFNKTQQDTFLPHVECGTITLIGATTENPSFQVNTA-LLSR---C 300

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193
            V+ +     + +E ++++      I +
Sbjct: 301 RVIVLEKLSVEAMEAILMRAVGSLGIKV 328


>gi|189346365|ref|YP_001942894.1| recombination factor protein RarA [Chlorobium limicola DSM 245]
 gi|189340512|gb|ACD89915.1| AAA ATPase central domain protein [Chlorobium limicola DSM 245]
          Length = 449

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 22/137 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSILIDTRKP-----------V 111
             +IL GP GSGK+ LA I +     R  + S I   +  +                  +
Sbjct: 64  PSMILWGPPGSGKTTLAEICATSLHYRFEQLSAIDAGVKEVRKALDGARQARRSGQRTIL 123

Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            +++I   +      L H I    +     L+ A T   S+ V    L SR++   V  +
Sbjct: 124 FIDEIHRFNKAQQDTLLHAI----EQGLITLIGATTENPSFEVNGA-LLSRMQ---VYIL 175

Query: 171 SLPDDDFLEKVIVKMFA 187
               +  +E VI +  A
Sbjct: 176 QPLSEQDIEAVIRRAVA 192


>gi|314933792|ref|ZP_07841157.1| ATPase, AAA family [Staphylococcus caprae C87]
 gi|313653942|gb|EFS17699.1| ATPase, AAA family [Staphylococcus caprae C87]
          Length = 422

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 33/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQMVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMF--ADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDK--MDNLAL 224
           DD  +   + +    +DR +      +D+    Y   + +  +  A   ++   +    +
Sbjct: 152 DDHDVRIALDRAIEDSDRGLKSYHPNVDEDGMEYFSTQSQGDVRSALNALELAVLSAEVV 211

Query: 225 SRGMGITRSLAAEVLKE 241
                IT   A + L++
Sbjct: 212 ENQRHITLDDAKDCLQK 228


>gi|226355347|ref|YP_002785087.1| recombination factor protein RarA [Deinococcus deserti VCD115]
 gi|226317337|gb|ACO45333.1| putative DNA-dependent ATPase [Deinococcus deserti VCD115]
          Length = 451

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 25/175 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA + + +  +   +  A S  + + D R+ V   +        T
Sbjct: 62  GSLILWGPPGVGKTTLARLVAGEVGAHFIALSAVS--AGVKDVREAVTEAERLRARGTRT 119

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     L+ A T   S+ V  P L SR   A  + +  
Sbjct: 120 ILFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARTLVLEA 175

Query: 173 PDDDFLEKVIVKMFAD-RQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + ++ ++ +  +D R +    ++ +    + +  +     A + +  ++  A
Sbjct: 176 LTQEDIKGLLERALSDERGLPGVSVEPEALDLLARLAD---GDARRALSTLEVAA 227


>gi|152967771|ref|YP_001363555.1| ATPase AAA [Kineococcus radiotolerans SRS30216]
 gi|151362288|gb|ABS05291.1| AAA ATPase central domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 458

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 58/203 (28%)

Query: 65  RVVILVGPSGSGKS----CLANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           R V+L GP G+GK+     L +   D +         + +  +           V+LED 
Sbjct: 249 RGVLLYGPPGTGKTLTVRHLVSRARDSTVVLLSGQSLALVTTAAHLARAMQPAIVVLEDC 308

Query: 117 DLLDFNDTQ-------LFHIINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           DL+  +  Q       LF +++++       D + L+T             DL  R  A 
Sbjct: 309 DLVAEDRGQSPGERPLLFELLDAMDGLDGDADVAFLLTTNRA---------DLLERALAQ 359

Query: 166 ------TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
                   V++ LPD+     +       R + +  ++                      
Sbjct: 360 RPGRVDLAVEVPLPDEAARHALF--RLYARGLGVSDEVL--------------------- 396

Query: 220 DNLALSRGMGITRSLAAEVLKET 242
              A +R  G+T S A E+L+  
Sbjct: 397 -REAAARSAGVTASFARELLRRA 418


>gi|298204408|emb|CBI16888.3| unnamed protein product [Vitis vinifera]
          Length = 471

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 40/213 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 217 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARVRDLFNVARKCAP 276

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        +++ A   P +    L 
Sbjct: 277 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDMKVIVIAATNRPEALDAALC 336

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V +  PD++   K++     +  +  D +L   +V  + +  V A  
Sbjct: 337 RPGRFSR-----KVLVGEPDEEGRRKILAIHLREVPLEEDTRLICNLVASLTQGFVGA-D 390

Query: 215 LVDKMDNLALSRGMG----ITRSLAAEVLKETQ 243
           L + ++  AL  G      +TR    E ++  +
Sbjct: 391 LANIVNEAALLAGRRGGESVTREDIMEAIERAR 423


>gi|221195770|ref|ZP_03568823.1| recombination factor protein RarA [Atopobium rimae ATCC 49626]
 gi|221184244|gb|EEE16638.1| recombination factor protein RarA [Atopobium rimae ATCC 49626]
          Length = 465

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 23/136 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112
           V+L GP+G+GK+ LA+I ++ + +      A +                 +   TR  + 
Sbjct: 56  VLLYGPAGTGKTTLAHIIANSTHAAFVEVSAITGTVKDLRREIEAAESRLLTAGTRTILF 115

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I   +      L H      +  + +L+ A T    + V    L SR   + VV++ 
Sbjct: 116 IDEIHRFNRSQQDALLH----AVEDRTVVLIGATTENPYFEVNSA-LISR---SRVVELY 167

Query: 172 LPDDDFLEKVIVKMFA 187
             DD+ +  +I +   
Sbjct: 168 PLDDEAISHLIERACE 183


>gi|301091915|ref|XP_002896132.1| cell division control protein 48 [Phytophthora infestans T30-4]
 gi|262094952|gb|EEY53004.1| cell division control protein 48 [Phytophthora infestans T30-4]
          Length = 804

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 35/171 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 232 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 291

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + Q  S +++ A   P S    
Sbjct: 292 APAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKQRASVVVIGATNRPNSMD-- 349

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
            P L  R  +    + I +PD++   ++       R + +D  +   ++ R
Sbjct: 350 -PALR-RFGRFDREIDIGVPDENGRLEIF--RIHTRNMKLDDDVDPEMIAR 396



 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D    
Sbjct: 505 PSKGVLFYGPPGCGKTLLAKAVANECQANFISIKGPELLTMWFGESEANVREVFDKARG 563


>gi|296004694|ref|XP_966179.2| cell division cycle protein 48 homologue, putative [Plasmodium
           falciparum 3D7]
 gi|225631753|emb|CAG25009.2| cell division cycle protein 48 homologue, putative [Plasmodium
           falciparum 3D7]
          Length = 828

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+C+A   ++++ +  F                +N+ ++ +    +
Sbjct: 240 PPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 299

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ I      +++ A          
Sbjct: 300 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKSRGQVVVIAAT---NRQNSI 356

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD+   +++      + + +   +
Sbjct: 357 DPALR-RFGRFDREIDIGVPDDNGRFEIL--RIHTKNMKLSPDV 397



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D  
Sbjct: 513 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKA 569


>gi|221057948|ref|XP_002261482.1| cell division cycle protein 48 homologue [Plasmodium knowlesi
           strain H]
 gi|194247487|emb|CAQ40887.1| cell division cycle protein 48 homologue,putative [Plasmodium
           knowlesi strain H]
          Length = 822

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+C+A   ++++ +  F                +N+ ++ +    +
Sbjct: 240 PPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 299

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ I      +++ A          
Sbjct: 300 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKSRGQVVVIAAT---NRQNSI 356

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD+   +++      + + +   +
Sbjct: 357 DPALR-RFGRFDREIDIGVPDDNGRFEIL--RIHTKNMKLSPDV 397



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D  
Sbjct: 513 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKA 569


>gi|189205687|ref|XP_001939178.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187975271|gb|EDU41897.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 740

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 43/196 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   + +S++                 S  A     +   +  P +
Sbjct: 515 VLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQVFMRARSSVPCV 574

Query: 113 L--EDIDLLDFNDTQLFH-----IINSIH-------QYDSSLLMTARTFPVSWGVCLPDL 158
           +  +++D L    +   H     ++N++        + +   L+ A   P      +  L
Sbjct: 575 IFFDELDALVPKRSAELHEASARVVNTLLTELDGLSEREGIYLIAATNRPEMIDEAM--L 632

Query: 159 C-SRLKAATVVKISLPDD--DFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----SLVF 211
              RL+    V++  P++  D L+ +I +    R   I  +LA   + R++     S   
Sbjct: 633 RPGRLETLLYVELPKPEERVDILKALIRQ----RGGLISPELAE--IARLDACKDFSGAD 686

Query: 212 AEKLVDKMDNLALSRG 227
            E L+ K    AL R 
Sbjct: 687 LESLLRKAGQHALRRR 702


>gi|148551020|ref|YP_001260450.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|293980667|ref|YP_003543425.1| putative transposase-associated ATP-binding protein [Sphingobium
           japonicum UT26S]
 gi|148503431|gb|ABQ71683.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii
           RW1]
 gi|292677684|dbj|BAI99199.1| putative transposase-associated ATP-binding protein [Sphingobium
           japonicum UT26S]
          Length = 287

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTR 108
           +IL GP G GKS LA           W        +  +  + +    +L+S +  +D  
Sbjct: 109 LILFGPPGGGKSHLAAAIGLQLVQNGWRVLFTRTSELVQKLQLARRELALESAIAKLDKY 168

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             ++L+D+  +  +  +   LF +I S      S+L+TA      W    PD
Sbjct: 169 HLLILDDLAYVAKDQAETSVLFELI-SARYERRSMLITANQPFGEWNRVFPD 219


>gi|68068609|ref|XP_676215.1| cell division cycle protein [Plasmodium berghei strain ANKA]
 gi|56495807|emb|CAH97250.1| cell division cycle protein 48 homologue, putative [Plasmodium
           berghei]
          Length = 500

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+C+A   ++++ +  F                +N+ ++ +    +
Sbjct: 238 PPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 297

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ I      +++ A          
Sbjct: 298 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKSRGQVVVIAAT---NRQNSI 354

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD+   +++      + + +   +
Sbjct: 355 DPALR-RFGRFDREIDIGVPDDNGRFEIL--RIHTKNMKLSPDV 395


>gi|82538797|ref|XP_723826.1| cell division cycle protein 48 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23478257|gb|EAA15391.1| cell division cycle protein 48 homolog [Plasmodium yoelii yoelii]
          Length = 815

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+C+A   ++++ +  F                +N+ ++ +    +
Sbjct: 238 PPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 297

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ I      +++ A          
Sbjct: 298 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKSRGQVVVIAAT---NRQNSI 354

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD+   +++      + + +   +
Sbjct: 355 DPALR-RFGRFDREIDIGVPDDNGRFEIL--RIHTKNMKLSPDV 395



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D  
Sbjct: 511 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKA 567


>gi|269119747|ref|YP_003307924.1| ATPase AAA [Sebaldella termitidis ATCC 33386]
 gi|268613625|gb|ACZ07993.1| AAA ATPase central domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 408

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 27/172 (15%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           I  GPSG+GK+ LA I +++                 +  I    +K   +E        
Sbjct: 52  IFWGPSGTGKTTLAEIVAEQLNYYYEYLNATKASVNDIKEIAEKAKKRFSIE------GK 105

Query: 123 DTQLF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N + Q          + +L+ A T    + +    L SR     + + 
Sbjct: 106 QTILFFDEIHRFNKLQQDSLLHDIEIGNIILIGATTENPYFNLNNA-LLSR---CLMFEF 161

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
              D + +  ++ ++    +I +   +  YI   +E     A   ++ + NL
Sbjct: 162 KKLDKEDIFGILKRIREKEEIELSDDVLNYISDIVEGDARQAINFLELLSNL 213


>gi|301170352|emb|CBW29958.1| recombination protein [Haemophilus influenzae 10810]
          Length = 446

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223
                 +E+V+ +   D  R      + +++ L   + + +      A   ++ + ++A 
Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELVVDMAE 223

Query: 224 -LSRGMGITRSLAAEVLKETQQ 244
               G  I R+L  EVL E Q 
Sbjct: 224 ETENGKKIDRTLLKEVLGERQA 245


>gi|217961392|ref|YP_002339960.1| hypothetical protein BCAH187_A4023 [Bacillus cereus AH187]
 gi|217065890|gb|ACJ80140.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus cereus AH187]
          Length = 263

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  +L       
Sbjct: 99  AVKYVKTFKEWKGESLLLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 158

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 159 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 218

Query: 148 PVSWG 152
           P    
Sbjct: 219 PKELK 223


>gi|220907524|ref|YP_002482835.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp.
           PCC 7425]
 gi|220907691|ref|YP_002483002.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp.
           PCC 7425]
 gi|220908363|ref|YP_002483674.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp.
           PCC 7425]
 gi|220908465|ref|YP_002483776.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp.
           PCC 7425]
 gi|220909062|ref|YP_002484373.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp.
           PCC 7425]
 gi|220909677|ref|YP_002484988.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp.
           PCC 7425]
 gi|220910644|ref|YP_002485954.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|220910680|ref|YP_002485990.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219864135|gb|ACL44474.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219864302|gb|ACL44641.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219864974|gb|ACL45313.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219865076|gb|ACL45415.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219865673|gb|ACL46012.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219866288|gb|ACL46627.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219867416|gb|ACL47753.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219867452|gb|ACL47789.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425]
          Length = 236

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 41/157 (26%)

Query: 25  EEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV--ILVGPSGS 75
           E QL        F F  C                 +  +     W +R    IL+GPSG 
Sbjct: 44  EAQLPAAKSFTNFDFSHCPQF----------NPAPLMQLAQTTDWLARAQNCILLGPSGV 93

Query: 76  GKSCLAN--------------IWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDID 117
           GK+ LA                ++  +   +  +    L        +D    ++L+D+ 
Sbjct: 94  GKTHLAASLARRCIELGKRVKFFAATALVQQLQDAKLQLQLYPLLKKLDRYDLLVLDDLG 153

Query: 118 LLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSW 151
            +  N+T+   LF +I +      SLL+TA      W
Sbjct: 154 YVKKNETETSVLFELI-AHRYERKSLLITANQPFSQW 189


>gi|78042989|ref|YP_361014.1| recombination factor protein RarA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995104|gb|ABB14003.1| ATPase, AAA family [Carboxydothermus hydrogenoformans Z-2901]
          Length = 444

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 76/206 (36%), Gaps = 41/206 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +I  GP G+GK+ LA I +   KS     + +   +  I    +K    ++ +     
Sbjct: 52  GSLIFYGPPGTGKTTLARIIASTTKSGFESINAVTSGVGEIREVIKKA---KEREKYYGE 108

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  + +L+ A T    + V  P L SR   + + + 
Sbjct: 109 RTVLFIDEIHRFNKAQQDALLPEVEAGTIVLIGATTENPYFEVNAP-LLSR---SRIFEF 164

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVF--AEKLVDKMDN 221
              + + + +++ +   D  R +      I ++   ++V      +    A   ++ ++ 
Sbjct: 165 KPLEPEHIREIVRRALVDKERGLGEYKVEISEEALDHLVT-----MAAGDARAALNGIEL 219

Query: 222 LALSRG------MGITRSLAAEVLKE 241
             L+          IT  +  + +++
Sbjct: 220 AVLTTPPDEDGVRKITVEIIEQSMQK 245


>gi|332796393|ref|YP_004457893.1| AAA ATPase [Acidianus hospitalis W1]
 gi|332694128|gb|AEE93595.1| AAA family ATPase, CDC48 subfamily [Acidianus hospitalis W1]
          Length = 750

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G GK+ LA   +++  +   S                 + +  D    +
Sbjct: 210 PPKGILLYGPPGVGKTLLARALANEIGAYFISINGPEIMSKFYGESEERLRQIFDEANKN 269

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I      +++ A   P +    
Sbjct: 270 APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKIIVIGATNRPDAID-- 327

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    ++++      R + +   +
Sbjct: 328 -PALRRPGRFDREIEIRPPDTKARKEILQVH--TRSMPLSDDV 367


>gi|317120879|ref|YP_004100882.1| IstB domain protein ATP-binding protein [Thermaerobacter
           marianensis DSM 12885]
 gi|315590859|gb|ADU50155.1| IstB domain protein ATP-binding protein [Thermaerobacter
           marianensis DSM 12885]
          Length = 247

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 18/138 (13%)

Query: 43  LLVHSAIEQAV----RLIDSW-PSWPSRVVILVGPSGSGKSCLANI-------WSDKSRS 90
                A E+A       ++++ P      +I VGP G+GK+ LA            +   
Sbjct: 94  FRRTPANEEAYWRARAYVEAYVPGETGTGLIFVGPPGTGKTHLAAATLREIVRTRGERDF 153

Query: 91  TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTF 147
                 +K         R+ ++L+D+    ++     QL+ +IN  ++ +   ++TA   
Sbjct: 154 AWVHVPSKLDRLEAYAERRLLVLDDLTGTTWSPQAQRQLYVLINRRYEAELPTIVTANMG 213

Query: 148 PVSWGVCL--PDLCSRLK 163
                  L   DL  RL 
Sbjct: 214 KERME-RLFGADLVDRLN 230


>gi|167768575|ref|ZP_02440628.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1]
 gi|317497939|ref|ZP_07956247.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710099|gb|EDS20678.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1]
 gi|291560535|emb|CBL39335.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [butyrate-producing bacterium SSC/2]
 gi|316894772|gb|EFV16946.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 438

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + ++ +++      A +     +        E + +     T L
Sbjct: 55  IIFYGPPGTGKTTLAKVIANTTKANFVQMNATTSGKKDMQEAVADAKESLGMYQKK-TIL 113

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + V ++   D
Sbjct: 114 FIDEIHRFNKAQQDYLLPFVEDGTIILIGATTENPYFEVNQA-LISR---SNVFELHSLD 169

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            + ++K+IV+   D           I      ++    E     A   ++
Sbjct: 170 KEDIKKLIVRAITDDEKGMGIYGATITDDALDFLSDMAEGDARSALNAIE 219


>gi|331004982|ref|ZP_08328392.1| putative ATPase associated with chromosome architecture [gamma
           proteobacterium IMCC1989]
 gi|330421224|gb|EGG95480.1| putative ATPase associated with chromosome architecture [gamma
           proteobacterium IMCC1989]
          Length = 466

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 31/194 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ LA + +    +  T  S +   +  I        L +         T
Sbjct: 68  MILWGPPGVGKTSLARMLAHLIDAEYTSLSAVLAGVKDIRQAVATAQLTQ---QTSGRRT 124

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +   + A T   S+ +    L SR     V  +  
Sbjct: 125 LLFVDEVHRFNKAQQDAFLPYVENGTITFIGATTENPSFELNNA-LLSR---CRVYVLRR 180

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             DD + +++ +   D       +++   + +   +          A + ++ ++  +  
Sbjct: 181 LGDDDIIQLLHRALNDSDKGLGQKELHCSEDVINILASAAN---GDARRALNLLEIASDL 237

Query: 226 RGMGITRSLAAEVL 239
               IT  + AE+L
Sbjct: 238 AEQNITLEIVAEIL 251


>gi|290968723|ref|ZP_06560261.1| recombination factor protein RarA [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781376|gb|EFD93966.1| recombination factor protein RarA [Megasphaera genomosp. type_1
           str. 28L]
          Length = 439

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 77/198 (38%), Gaps = 33/198 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA--------------KSLDSILIDTRKP 110
             ++  GPSG GK+ LA++ + +++    +  A                 D  +   R  
Sbjct: 56  PSLLFYGPSGVGKTTLAHVIAAETKCKFVNLNAVMSGTADLRRVIETAKQDIQIYQKRTL 115

Query: 111 VLLEDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           V +++I   + +   +   H+ N      + +L+ A T    + V  P L SRL+   V+
Sbjct: 116 VFIDEIHRFNKSQQDILLPHVEN-----GTIILIGATTENPYFEVNRP-LLSRLR---VI 166

Query: 169 KISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            +       +  V+ +   D       ++I    +    + +  +     A  L++++  
Sbjct: 167 VLPPLSVQAVVAVLRRALRDEEKGLGQQRITAADETLQSLARLADCDARMALNLLEQV-C 225

Query: 222 LALSRGMGITRSLAAEVL 239
             L  G  IT S  A+V+
Sbjct: 226 ALLPAGGRITSSYLAKVV 243


>gi|159896622|ref|YP_001542869.1| IstB ATP binding domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159889661|gb|ABX02741.1| IstB domain protein ATP-binding protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 266

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 31/142 (21%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           V+ +  +A     +   W    ++LVG  G GK+ LA   ++++    +  I   +  +L
Sbjct: 104 VNESFARAKAFAQAPKGW----LLLVGGYGCGKTHLAAAIANEAVRREYQTIFMVVPDLL 159

Query: 105 ---------------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSL 140
                                I + + ++L+D+       +   +LF IIN  +      
Sbjct: 160 DYLRSTFGPNSEVAYDERFDKIRSIQLLVLDDLGAESSTAWAREKLFQIINHRYNNHLPT 219

Query: 141 LMTARTFPVSWGVCLPDLCSRL 162
           + T            P + SRL
Sbjct: 220 VFTTNV---DLDKLDPRIASRL 238


>gi|326433452|gb|EGD79022.1| cell division cycle protein 48 [Salpingoeca sp. ATCC 50818]
          Length = 805

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 78/208 (37%), Gaps = 54/208 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ LA   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILLYGPPGTGKTLLARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ + Q    ++M A   P S    
Sbjct: 294 APAIIFIDEIDAIAPKREKTQGEVERRTVSQLLTLMDGLKQRAHVVVMAATNRPNSIDPA 353

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
                       + +PD   RL+        + L DD  LE+V      +   ++   LA
Sbjct: 354 LRRFGRFDREVDIGIPDATGRLEILRIHTKNMKLSDDVDLEQV----AKETHGYVGADLA 409

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSR 226
           A        S    +++ +++D + L  
Sbjct: 410 ALC------SEAALQQIRERIDVIDLEE 431



 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D     
Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAA 566

Query: 122 NDTQLF--HIINSIHQYDSSL 140
               LF   + +       SL
Sbjct: 567 APCVLFFDELDSIAKARGGSL 587


>gi|209880048|ref|XP_002141464.1| transitional endoplasmic reticulum ATPase protein [Cryptosporidium
           muris RN66]
 gi|209557070|gb|EEA07115.1| transitional endoplasmic reticulum ATPase protein, putative
           [Cryptosporidium muris RN66]
          Length = 802

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                 N+ ++ +    +
Sbjct: 243 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKN 302

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 303 SPAIIFIDEIDSIAPKREKTHGEVERRVVSQLLTLMDGLKGRGQVVVIAATNRPNSIDAA 362

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PDD+   ++I      R + + K +
Sbjct: 363 LR----RFGRFDREIDIGVPDDNGRLEII--RIHTRNMKLAKDV 400



 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D  
Sbjct: 516 PSRGVLFYGPPGCGKTLLAKAVASECSANFISVKGPELLTLWFGESEANVREVFDKA 572


>gi|18129319|emb|CAC83484.1| DnaA protein [Wolbachia endosymbiont of Dirofilaria immitis]
          Length = 150

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SRL    V  I+    +    ++        I++   +  ++ + +
Sbjct: 1   RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNIYVPDDVLEFLARNI 60

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + ++   E  ++K+ + +L  G  +T   A+E L +  + +
Sbjct: 61  KSNIRELEGALNKVAHTSLI-GRSMTVESASETLADLLRSN 100


>gi|300120988|emb|CBK21370.2| unnamed protein product [Blastocystis hominis]
          Length = 475

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 32/206 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS------------TRFSNIAKSLDSILIDTRKP 110
           P    IL GPSG GK+ +A I S ++                  ++    D +   T+ P
Sbjct: 30  PPPSFILCGPSGCGKTTVAYIISKQTTCPFKSLSCCTSDLKEVRSVLDECDKVFFSTKTP 89

Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
             + L++I     N   +F       +    +L+ A T   S+ + +P L SR     V 
Sbjct: 90  TILFLDEIHRFSKNQQDVFLPY---VESGKLVLIGATTENPSFSI-IPALLSR---CRVF 142

Query: 169 KIS-LPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDN-- 221
            +  L  D  L  +   +  D   R++ +       +++ +  RS   A + ++ +++  
Sbjct: 143 PLQLLSSDALLHVLEHALATDSILRELQVSVD--DALLREISLRSDGDARRALNSLESCV 200

Query: 222 --LALSRGMGITRSLAAEVLKETQQC 245
              + S     + SL   VL E +Q 
Sbjct: 201 LFASHSPSKHASPSLLRSVLCEDKQP 226


>gi|269986895|gb|EEZ93171.1| Microtubule-severing ATPase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 763

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P R V+L GP G+GK+ LA   +D+S +   +            +  K L  I  D    
Sbjct: 246 PPRGVLLYGPPGTGKTLLARAVADESEAHFITINGPEVMSKWVGDAEKKLREIFDDAEKN 305

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 306 APSIIFIDEIDAIATKREESIGEVEHRVVSQLLTLMDGLRSRGKVIVIAATNRPNAIDPA 365

Query: 155 L 155
           L
Sbjct: 366 L 366



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 17/74 (22%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCL 80
              +   D+     +EQ    +     WP +               ++L GP G+GK+ L
Sbjct: 481 RPSVGWADV---GGLEQVKAQLKEAIDWPLKHPDSFRRVGITPPKGILLYGPPGTGKTLL 537

Query: 81  ANIWSDKSRSTRFS 94
           A   + ++ S   +
Sbjct: 538 ARAVAHETESNFIA 551


>gi|194336934|ref|YP_002018728.1| AAA ATPase central domain protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309411|gb|ACF44111.1| AAA ATPase central domain protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 447

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 30/199 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKP-----------V 111
             +I  GP GSGK+ LA I +        + S I   +  +     +            +
Sbjct: 62  PSMIFWGPPGSGKTTLAEICATSLNYSFEQLSAIDSGVKEVRKALEQAEKSRRSGRRTIL 121

Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            +++I   +      L H I    +    +L+ A T   S+ V    L SR++   V  +
Sbjct: 122 FIDEIHRFNKAQQDTLLHAI----EQGLIVLIGATTENPSFEVNGA-LLSRMQ---VYIL 173

Query: 171 SLPDDDFLEKVIVKMFAD----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALS 225
                + +E VI +   +    R + I+     +++Q    S   A K ++ ++   +L 
Sbjct: 174 KPLGSEEIELVIRRALKEDRLLRDLSIEITDLDFLLQF---SGGDARKALNAVEAAISLF 230

Query: 226 RGMGITRSLAAEVLKETQQ 244
                   L  E+L+   Q
Sbjct: 231 PEGASEMVLTRELLERALQ 249


>gi|170783852|gb|ACB37399.1| DnaA [Spiroplasma mirum]
          Length = 150

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 106 DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           D    +L++DI LL   +      F+I NS  + +  +++T+  +P   G     + SR 
Sbjct: 40  DKFDCLLIDDIQLLAKRNKTNELFFYIFNSFIEKNKQIVITSDKYPDDLGGFEARIISRF 99

Query: 163 KAATVVKISLPD-DDFLEKVIVKMFADRQIFI-DKKLAAYIVQR 204
                + +  PD +  ++ +  K+     + +  ++   +I   
Sbjct: 100 SYGLSIGLDFPDFETAIKILEQKLKQQNNLALFSEESLEFIALN 143


>gi|320095686|ref|ZP_08027342.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319977407|gb|EFW09094.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 456

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 29/176 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +I  GP G GK+ LA + + ++ +    FS +   +  I    R+     D       
Sbjct: 54  PSMIFWGPPGVGKTTLARVIARRTCASFIDFSAVTSGIKEIREVMRQA----DAQASTGR 109

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T +F    H  N           +  S +L+ A T   S+ V    L SR     V  +
Sbjct: 110 RTIVFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEVNSA-LLSR---CKVFVL 165

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALS 225
           +   +D +  ++ +  AD + F ++ +      R+E  L+ A  +    D  +ALS
Sbjct: 166 NALAEDDITALLRRALADPRGFGEQDV------RIEDDLLRAIAVFANGDARVALS 215


>gi|258511770|ref|YP_003185204.1| DNA replication protein-like protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478496|gb|ACV58815.1| DNA replication protein-like protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 306

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 33/158 (20%)

Query: 50  EQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
             A     +W     P   + L GP G GK+ L      + +     ++    DS+    
Sbjct: 139 RYAQEFARTWSPQEAPRAGLYLFGPPGVGKTHLMFAVFRELQRRGVPSLVVRSDSLFDHM 198

Query: 108 RKPVLL-EDIDL----------LDFND-----------TQLFHIINSIHQYDSSLLMTAR 145
           R  +   ED++           L  ++            +LF +IN    +  S   T+ 
Sbjct: 199 RHVIAAGEDLEPFLETLSTVPVLGIDEFAQERANEFSMEKLFRVINYRFHHKLSTWFTSN 258

Query: 146 -TFPVSWGVCLPD-------LCSR-LKAATVVKISLPD 174
            + P ++   + D       L SR +    +VK+  PD
Sbjct: 259 FSPPDAYRRGVDDLLDTVAPLRSRVMSMCILVKMDGPD 296


>gi|255569991|ref|XP_002525958.1| Cell division protease ftsH, putative [Ricinus communis]
 gi|223534690|gb|EEF36382.1| Cell division protease ftsH, putative [Ricinus communis]
          Length = 636

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 78/214 (36%), Gaps = 44/214 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 382 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFKVARKSAP 441

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        +++ A   P +    L 
Sbjct: 442 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDMKVVVIAATNRPEALDQALC 501

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK--KLAAYIVQRMERSLVFA 212
            P   SR      V +  PD++  EK++      R + +++   L   +V  +    V A
Sbjct: 502 RPGRFSR-----KVLVGEPDEEGREKILSVHL--RGVPLEEDTDLICNLVASLTPGFVGA 554

Query: 213 EKLVDKMDNLALSRGMG----ITRSLAAEVLKET 242
             L + ++  AL         +TR    E ++  
Sbjct: 555 -DLANIVNEAALLAARRGGETVTREDIMEAIERA 587


>gi|108803881|ref|YP_643818.1| recombination factor protein RarA [Rubrobacter xylanophilus DSM
           9941]
 gi|108765124|gb|ABG04006.1| Recombination protein MgsA [Rubrobacter xylanophilus DSM 9941]
          Length = 429

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 28/194 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             VIL GP G+GK+ LA + +           A +     +        E +   +   T
Sbjct: 53  GSVILWGPPGTGKTTLARVLAASVEEEFVPLSAVTSGVRDLRAALDGARERL-KYEGRGT 111

Query: 125 QLF----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q   +LL          + A T   S+ V  P L SR   + V+++
Sbjct: 112 LLFVDEVHRFNKAQQD--ALLPALEEGLVDFIGATTENPSFEVTAP-LLSR---SRVLRL 165

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG--- 227
                  LE ++ +  ++  + I  +   Y+++        A ++++ ++  A  R    
Sbjct: 166 RPLSKGDLEALLERGLSELGVGISGEARDYLLRLAG---GDARRMLNALEVAASGRREVG 222

Query: 228 -MGITRSLAAEVLK 240
              I R+L    L+
Sbjct: 223 VAEIERALGQRALR 236


>gi|254725910|ref|ZP_05187692.1| hypothetical protein BantA1_26221 [Bacillus anthracis str. A1055]
          Length = 232

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  +L       
Sbjct: 68  AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 127

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 128 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 187

Query: 148 PVSWG 152
           P    
Sbjct: 188 PKELK 192


>gi|228936973|ref|ZP_04099715.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228822688|gb|EEM68578.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 196

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  +L       
Sbjct: 32  AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 91

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 92  NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 151

Query: 148 PVSWG 152
           P    
Sbjct: 152 PKELK 156


>gi|30263982|ref|NP_846359.1| hypothetical protein BA_4120 [Bacillus anthracis str. Ames]
 gi|47529415|ref|YP_020764.1| hypothetical protein GBAA_4120 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186825|ref|YP_030077.1| hypothetical protein BAS3827 [Bacillus anthracis str. Sterne]
 gi|227813113|ref|YP_002813122.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. CDC 684]
 gi|254683677|ref|ZP_05147537.1| hypothetical protein BantC_07490 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721513|ref|ZP_05183302.1| hypothetical protein BantA1_03490 [Bacillus anthracis str. A1055]
 gi|254736021|ref|ZP_05193727.1| hypothetical protein BantWNA_12761 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743913|ref|ZP_05201596.1| hypothetical protein BantKB_23430 [Bacillus anthracis str. Kruger
           B]
 gi|254754309|ref|ZP_05206344.1| hypothetical protein BantV_17650 [Bacillus anthracis str. Vollum]
 gi|254758000|ref|ZP_05210027.1| hypothetical protein BantA9_06820 [Bacillus anthracis str.
           Australia 94]
 gi|30258626|gb|AAP27845.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. Ames]
 gi|47504563|gb|AAT33239.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180752|gb|AAT56128.1| prophage LambdaBa02, DNA replication protein DnaC, putative
           [Bacillus anthracis str. Sterne]
 gi|227005851|gb|ACP15594.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. CDC 684]
          Length = 267

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  +L       
Sbjct: 103 AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 162

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 163 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 222

Query: 148 PVSWG 152
           P    
Sbjct: 223 PKELK 227


>gi|30260604|ref|NP_842981.1| hypothetical protein BA_0439 [Bacillus anthracis str. Ames]
 gi|47525714|ref|YP_017063.1| hypothetical protein GBAA_0439 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183453|ref|YP_026705.1| hypothetical protein BAS0425 [Bacillus anthracis str. Sterne]
 gi|165870647|ref|ZP_02215300.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0488]
 gi|170688562|ref|ZP_02879768.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0465]
 gi|170707080|ref|ZP_02897536.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0389]
 gi|227816684|ref|YP_002816693.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. CDC 684]
 gi|229601670|ref|YP_002865051.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0248]
 gi|254686830|ref|ZP_05150688.1| hypothetical protein BantC_23720 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724905|ref|ZP_05186688.1| hypothetical protein BantA1_20959 [Bacillus anthracis str. A1055]
 gi|254756210|ref|ZP_05208239.1| hypothetical protein BantV_27421 [Bacillus anthracis str. Vollum]
 gi|254762029|ref|ZP_05213878.1| hypothetical protein BantA9_26421 [Bacillus anthracis str.
           Australia 94]
 gi|30253972|gb|AAP24467.1| putative prophage LambdaBa04, DNA replication protein DnaC
           [Bacillus phage lambda Ba01]
 gi|47500862|gb|AAT29538.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177380|gb|AAT52756.1| prophage LambdaBa04, DNA replication protein DnaC, putative
           [Bacillus anthracis str. Sterne]
 gi|164713481|gb|EDR19005.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0488]
 gi|170127858|gb|EDS96729.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0389]
 gi|170667422|gb|EDT18179.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0465]
 gi|227007837|gb|ACP17580.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. CDC 684]
 gi|229266078|gb|ACQ47715.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0248]
          Length = 267

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  +L       
Sbjct: 103 AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 162

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 163 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 222

Query: 148 PVSWG 152
           P    
Sbjct: 223 PKELK 227


>gi|65321309|ref|ZP_00394268.1| COG1484: DNA replication protein [Bacillus anthracis str. A2012]
 gi|165872127|ref|ZP_02216766.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0488]
 gi|167633650|ref|ZP_02391974.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0442]
 gi|167641035|ref|ZP_02399292.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0193]
 gi|170688793|ref|ZP_02879997.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0465]
 gi|170705697|ref|ZP_02896160.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0389]
 gi|177654327|ref|ZP_02936256.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0174]
 gi|190566106|ref|ZP_03019025.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis Tsiankovskii-I]
 gi|229603463|ref|YP_002868213.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0248]
 gi|164712074|gb|EDR17612.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0488]
 gi|167511085|gb|EDR86474.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0193]
 gi|167531056|gb|EDR93743.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0442]
 gi|170129237|gb|EDS98101.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0389]
 gi|170667309|gb|EDT18068.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0465]
 gi|172080817|gb|EDT65898.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0174]
 gi|190563025|gb|EDV16991.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis Tsiankovskii-I]
 gi|229267871|gb|ACQ49508.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0248]
          Length = 263

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  +L       
Sbjct: 99  AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 158

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 159 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 218

Query: 148 PVSWG 152
           P    
Sbjct: 219 PKELK 223


>gi|65317867|ref|ZP_00390826.1| COG1484: DNA replication protein [Bacillus anthracis str. A2012]
 gi|167634728|ref|ZP_02393047.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0442]
 gi|167640846|ref|ZP_02399105.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0193]
 gi|177654982|ref|ZP_02936676.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0174]
 gi|190567634|ref|ZP_03020547.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis Tsiankovskii-I]
 gi|167511240|gb|EDR86627.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0193]
 gi|167529802|gb|EDR92550.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0442]
 gi|172080367|gb|EDT65455.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis str. A0174]
 gi|190561421|gb|EDV15393.1| putative prophage LambdaBa02, DNA replication protein DnaC
           [Bacillus anthracis Tsiankovskii-I]
          Length = 263

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  +L       
Sbjct: 99  AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 158

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 159 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 218

Query: 148 PVSWG 152
           P    
Sbjct: 219 PKELK 223


>gi|332981519|ref|YP_004462960.1| AAA ATPase central domain-containing protein [Mahella australiensis
           50-1 BON]
 gi|332699197|gb|AEE96138.1| AAA ATPase central domain protein [Mahella australiensis 50-1 BON]
          Length = 444

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 49/235 (20%)

Query: 23  NKEEQLFFSFPRCLGISR---DDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74
           N+ +QL    P    +     ++      ++        R I +        VI  GP G
Sbjct: 7   NRNKQLKKEAPLAERMRPRTLEEFVGQEHIIAPG-RMLYRAIKADR---LSSVIFYGPPG 62

Query: 75  SGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL---LDFNDTQLF-- 127
           +GK+ LA + ++  KS   + S +   +  +        L+++      +    T LF  
Sbjct: 63  TGKTTLARVIANTTKSHFEQLSAVTAGVADVRR------LIDEAKQRLGMYGQRTILFID 116

Query: 128 --HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
             H  N           +  + +L+ A T    + V    L SR   +TV ++    +  
Sbjct: 117 EIHRFNKAQQDALLPHVEAGTIILIGATTENPYFEVNSA-LLSR---STVFELYPLKEKH 172

Query: 178 LEKVIVKMFA--DRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           L++++ +  A  DR +      I      +IV   +     A  +++ ++   L+
Sbjct: 173 LKEILKRALADKDRGLGNYAIEITDDAIDHIVNMAD---GDARSVLNALEIAFLT 224


>gi|330683925|gb|EGG95693.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU121]
          Length = 423

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 39/200 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   +  ++         +    ++   +D   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAIAGSTQYKFRQLNAVTNTKKDMQMVVDEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELFPL 151

Query: 174 DDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           D+D +   + +     DR +      +D     Y   +   S       ++ ++   LS 
Sbjct: 152 DNDDIRLALNRALEDEDRGLNAYSPKVDDDAMTYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 -----GMGITRSLAAEVLKE 241
                   IT   A + L++
Sbjct: 209 SEEDGQRHITLQDAKDCLQK 228


>gi|255019842|ref|ZP_05291918.1| ATPase, AAA family [Acidithiobacillus caldus ATCC 51756]
 gi|254970771|gb|EET28257.1| ATPase, AAA family [Acidithiobacillus caldus ATCC 51756]
          Length = 437

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 28/175 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G GK+ LA++ + +  +   +  A       +     V  E         T L
Sbjct: 46  LVFWGPPGVGKTTLAHLLAAEQGAEVLTLSAVDSGVRELRAAAAVATER--RGRGESTVL 103

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  +  L+ A T   S+ +    L SR++   +  +    
Sbjct: 104 FIDEIHRFNKTQQDALLPHLEEGTLTLIGATTENPSFALVGA-LLSRIR---IYVLEPLG 159

Query: 175 DDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            + L  ++ +   DR+       + +     A ++ + +     A +L++ +D  
Sbjct: 160 QEALAAILERSLHDRERGLGDLAVELPDSARAQLLAQAD---GDARRLLNILDLA 211


>gi|312137192|ref|YP_004004529.1| ATPase AAA [Methanothermus fervidus DSM 2088]
 gi|311224911|gb|ADP77767.1| AAA family ATPase, CDC48 subfamily [Methanothermus fervidus DSM
           2088]
          Length = 732

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   +++S +   +               + L  I  +  + 
Sbjct: 237 PPKGVLLHGPPGTGKTLLAKAVANESDAHFIAINGPEIMSKYVGGSEERLREIFKEAEEN 296

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 297 APSIIFIDEIDAIAPKREEVTGEVERRIVAQLLTLMDGLKARGQVIVIGATNRPDALD-- 354

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD D  ++++      R + +   +
Sbjct: 355 -PALRRPGRFDREIEIGVPDRDERKEILE--IHTRGMPLADDV 394



 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++S +   +
Sbjct: 509 PPKGVLLYGPPGTGKTLLAKAVANESGANFIA 540


>gi|291245127|ref|XP_002742444.1| PREDICTED: Werner helicase interacting protein-like [Saccoglossus
           kowalevskii]
          Length = 633

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 35/205 (17%)

Query: 5   KEDYSFF--VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL----VHSAIEQAVRLIDS 58
            E  S F  +    + +  K   +    +       S DD +    V         LI++
Sbjct: 178 TEGQSIFAIMGQNARGNAEKKSADFAPLAEKMRPS-SLDDYVGQDKVIGTNTMLRSLIEA 236

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
                   +IL GP G GK+ LA I +  S + + SN       +   T     + ++  
Sbjct: 237 ---NDVPSMILWGPPGCGKTTLARIVA--SNAKKNSNSRLRFVQLSATTSNVSEVREVIK 291

Query: 119 LDFNDTQLF-----------HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLC 159
           +  N+  +F           H  N +         +  +  L+ A T   S+ V    L 
Sbjct: 292 IAQNEQTMFKRKTILFIDEIHRFNKLQQDTFLMHIENGTITLIGATTQNPSFQVNSA-LL 350

Query: 160 SRLKAATVVKISLPDDDFLEKVIVK 184
           SR     VV +       +E ++ K
Sbjct: 351 SR---CKVVVLEKLSIQSMENILTK 372


>gi|297568672|ref|YP_003690016.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924587|gb|ADH85397.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 461

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 32/184 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111
             ++L GP GSGK+ LA I +  S +                  + +S        R  V
Sbjct: 57  PSLLLWGPPGSGKTTLARILAGGSGADFVFFSAVLSGVKEIREIVERSRRIRAESGRGSV 116

Query: 112 L-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           L +++I   + +    F       +     L+ A T   S+ V  P L SR     V+ +
Sbjct: 117 LFVDEIHRFNKSQQDAFLPH---VEAGLITLIGATTENPSFHVIAP-LLSR---CRVIVL 169

Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NL 222
           +    + L+ ++ +  +D  R      + I ++ A +++   +     A  L++ ++   
Sbjct: 170 NPLAAEDLQIILERALSDEERGLGKLRLKISREAADHLISIAD---GDARSLLNSLEIAA 226

Query: 223 ALSR 226
           AL++
Sbjct: 227 ALAQ 230


>gi|257063510|ref|YP_003143182.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
 gi|256791163|gb|ACV21833.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
          Length = 446

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 32/182 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------VL 112
           +IL GP+G+GK+ +A+I ++ +R+     S I  ++  +  +                + 
Sbjct: 56  IILFGPAGTGKTSIAHIIAETTRAIFVEVSAIGGTVSDLRREIAAAEKRLYATGRRTILF 115

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I   +      L H      +  + +L+ A T    + V    L SR   + VV++ 
Sbjct: 116 VDEIHRFNRSQQDALLH----AVENRTVVLIGATTENPFFEVNSA-LISR---SRVVELH 167

Query: 172 LPDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LS 225
              DD + +V+    AD R +     +    A  IV     S   A   +  ++  + L+
Sbjct: 168 SLSDDDIRQVLDAALADERGLKGEFDLLPDAAEAIVT---LSGGDARGALTTLELASGLA 224

Query: 226 RG 227
           R 
Sbjct: 225 RQ 226


>gi|254420530|ref|ZP_05034254.1| ATPase, AAA family protein [Brevundimonas sp. BAL3]
 gi|196186707|gb|EDX81683.1| ATPase, AAA family protein [Brevundimonas sp. BAL3]
          Length = 442

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 24/148 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G+GK+ +A + +  +     S  A    S + D +K      +       T
Sbjct: 52  GSMILWGPPGTGKTTIARLLAQAAGYEYQSISAVF--SGVADLKKAFEAARMRRAAGQST 109

Query: 125 QLF----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q            +L+      P          L SR   + V  +
Sbjct: 110 LLFVDEIHRFNRAQQDGFLPFVEAGVVTLVGATTENPSFELNGA---LLSR---SQVYVL 163

Query: 171 SLPDDDFLEKVIVKMFA--DRQIFIDKK 196
              DD  L++++ +  A  +R + +  +
Sbjct: 164 KRLDDAALDQLLSRAEAHMERGLPLSPE 191


>gi|307299313|ref|ZP_07579114.1| AAA ATPase central domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915109|gb|EFN45495.1| AAA ATPase central domain protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 437

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 25/195 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------------STRFSNIAKSLDSILIDTRKPV 111
           +IL GP G+GK+ +  I   K                 +    + A       +  +  +
Sbjct: 48  MILYGPPGTGKTTIGEIIRSKLGNDYHFEFFSASLQGTADLKKHFAHGERLKRVGQQLVL 107

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            +++I  L+ +   +F     + +    +L+ A T   S+ V  P L SR +   +  + 
Sbjct: 108 FVDEIHRLNKSQQDVFLP---VTEKGIIILIGATTENPSFEVN-PALLSRCRLVILKGLK 163

Query: 172 LPDD-DFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
             D    L K + K  +  +  + +D ++   I Q        A  L+D +   A +   
Sbjct: 164 DSDISALLNKALEKDLILKESGVTVDGEVIEVIAQSSGGDARIALNLLDTLVESAAALDK 223

Query: 229 GITRSLAAEVLKETQ 243
            +   L  EV+ E  
Sbjct: 224 PV---LDLEVMNELS 235


>gi|41615258|ref|NP_963756.1| hypothetical protein NEQ475 [Nanoarchaeum equitans Kin4-M]
 gi|40068982|gb|AAR39317.1| NEQ475 [Nanoarchaeum equitans Kin4-M]
          Length = 826

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P + V+L GP G+GK+ LA   +++S +   S     + S  +   +             
Sbjct: 224 PPKGVLLYGPPGTGKTLLAKAVANESGAYFISINGPEIVSKYVGESEAKLREIFEEAQKN 283

Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 284 APAIIFIDEIDAIAPKRDEAVGEVERRLVAQLLTLMDGLKSRGKVIVIAATNRPNALDPA 343

Query: 155 L 155
           L
Sbjct: 344 L 344



 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G+GK+ LA   + +S +   +                 I +        
Sbjct: 518 PPKGVLLYGPPGTGKTLLAKAAASESGANFIAVKGPEILNKWVGESERAIREIFRKAKQA 577

Query: 107 TRKPVLLEDIDLLD 120
               + +++ID + 
Sbjct: 578 APAIIFIDEIDAIA 591


>gi|149180199|ref|ZP_01858704.1| transposase (23) [Bacillus sp. SG-1]
 gi|148852391|gb|EDL66536.1| transposase (23) [Bacillus sp. SG-1]
          Length = 254

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 24/119 (20%)

Query: 62  WPSRVVILV--GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL--------------- 104
           W  ++  ++  GP G GK+ L+     ++ +  +  I  ++  ++               
Sbjct: 96  WIEQLYNIIFLGPPGVGKTHLSIGLGIEALNQGYKVIFTTMGDLIQALKTEEITRKSKTR 155

Query: 105 ---IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
              I     V+++D+  +  +  +    FH+IN+++   SS+++T+   P  WG  L D
Sbjct: 156 MKRIREADLVIIDDLMFMAMDKQEANMFFHLINNLY-NQSSIILTSNKGPKEWGELLGD 213


>gi|146304797|ref|YP_001192113.1| replication factor C large subunit [Metallosphaera sedula DSM 5348]
 gi|145703047|gb|ABP96189.1| replication factor C large subunit [Metallosphaera sedula DSM 5348]
          Length = 443

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 81/212 (38%), Gaps = 32/212 (15%)

Query: 54  RLIDSWPSW-PSRVVI-LVGPSGSGKSCLANIWSD-------KSRS---------TRFSN 95
             IDSW    PS   + L GP G+GK+ LA   ++       ++ +              
Sbjct: 29  SWIDSWLKGSPSSTAVMLYGPPGTGKTSLAIALANTYKLELVETNASDTRNLTSLRAIVE 88

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            A    S+     K + L+++D +        +  I+  I      +LM A      W  
Sbjct: 89  RASISGSLFGIRGKLIFLDEVDGIQPKQDYGAVSAILEIIKNTKYPILMAANDP---WNP 145

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            L DL     A  ++++       + +++ K+ +  +I  +      I++  +    +A 
Sbjct: 146 NLRDLR---NAVKMIEVKKLGKIAMRRLLKKICSGEKIKCEDNALDQIIEASDGDSRYAI 202

Query: 214 KLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
             +      +++ G   +T  L +E+++  ++
Sbjct: 203 NFLQ-----SIAEGYGEVTEKLVSELVRRKER 229


>gi|228915217|ref|ZP_04078812.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844448|gb|EEM89504.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 196

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  ++       
Sbjct: 32  AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELIQRIRSTF 91

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 92  NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 151

Query: 148 PVSWG 152
           P    
Sbjct: 152 PKELK 156


>gi|183982180|ref|YP_001850471.1| hypothetical protein MMAR_2167 [Mycobacterium marinum M]
 gi|183175506|gb|ACC40616.1| conserved alanine, valine and leucine rich protein [Mycobacterium
           marinum M]
          Length = 452

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 75/214 (35%), Gaps = 48/214 (22%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRL----IDS--------WPSWPSRVVI--------- 68
           F  P     S   L V +    AVR+    +D          P  P R ++         
Sbjct: 10  FDLPGAPQHSDHGLEVSAGAPLAVRMRPESLDEVVGQGHLLAPGAPLRRLVEGSGVASVI 69

Query: 69  LVGPSGSGKSCLANIWSDKSR----STRFSNIAKSLDSILIDTRKPVL---------LED 115
           L GP GSGK+ LA + S  +     +    +        +I+T + VL         +++
Sbjct: 70  LYGPPGSGKTTLAALISHATGRRFEALSALSAGVKDVRAVIETARQVLRRGEQTVLFIDE 129

Query: 116 IDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +          L     S  +    LL+ A T   S+ V  P L SR   + ++++    
Sbjct: 130 VHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLHPLG 181

Query: 175 DDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203
            D +  V+ +   D R +     I       +VQ
Sbjct: 182 ADDIRAVVQRAAQDPRGLGGRVAIAPDATDLLVQ 215


>gi|296241870|ref|YP_003649357.1| replication factor C large subunit [Thermosphaera aggregans DSM
           11486]
 gi|296094454|gb|ADG90405.1| replication factor C large subunit [Thermosphaera aggregans DSM
           11486]
          Length = 430

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 30/205 (14%)

Query: 53  VRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD--------- 101
           +  +++W   P +   V+L GP+G GK+ L    +       F   A             
Sbjct: 30  LNWLENWGK-PGQKKAVLLHGPAGCGKTSLVEAVARSKGYQLFEMNASDFRRKSDIESIA 88

Query: 102 ------SILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                 S L   RK +LL+++D ++   ++  +  II  I+   + ++MTA   P S  +
Sbjct: 89  KIAAQTSGLTGKRKIILLDEVDGINARADEGGIEAIIELINVSKNPIVMTANN-PYSKNL 147

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            LP L    +    + +    +  +   + K+    +I    +    I +R E       
Sbjct: 148 -LP-LR---QNVLEIPMKRLSETHVVTALKKICGAEKIECSDEALREIAKRSE---GDLR 199

Query: 214 KLVDKMDNLALSRGMGITRSLAAEV 238
             ++ +  +A + G  +T  L   +
Sbjct: 200 SAINDLQAIAETYG-KVTLELVKSL 223


>gi|302382657|ref|YP_003818480.1| MgsA AAA+ ATPase-like protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193285|gb|ADL00857.1| MgsA AAA+ ATPase-like protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 434

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +IL GP G+GK+ +A + +  +     + S +   +  +     +      +      
Sbjct: 52  GSMILWGPPGTGKTTIARLLAKAAGYQYQQISAVFSGVADLKKAFEQA----RVRRAAGQ 107

Query: 123 DTQLF----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVV 168
            T LF    H  N   Q            +L+      P          L SR   + V 
Sbjct: 108 STLLFVDEIHRFNRAQQDGFLPFVEEGVVTLVGATTENPSFELNGA---LLSR---SQVF 161

Query: 169 KISLPDDDFLEKVIVKMFADRQIFID 194
            +   DD  L +++++  A+  + + 
Sbjct: 162 VLKRLDDAALNQLLIRAEAEEGLPLP 187


>gi|319776484|ref|YP_004138972.1| ATPase [Haemophilus influenzae F3047]
 gi|319897261|ref|YP_004135456.1| atpase [Haemophilus influenzae F3031]
 gi|317432765|emb|CBY81130.1| predicted ATPase [Haemophilus influenzae F3031]
 gi|317451075|emb|CBY87308.1| predicted ATPase [Haemophilus influenzae F3047]
          Length = 446

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLSDRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+V+ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLRTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
                 G  I R+L  EVL E Q 
Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245


>gi|332982999|ref|YP_004464440.1| IstB domain-containing protein ATP-binding protein [Mahella
           australiensis 50-1 BON]
 gi|332700677|gb|AEE97618.1| IstB domain protein ATP-binding protein [Mahella australiensis 50-1
           BON]
          Length = 225

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 29/157 (18%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDK---------- 87
            D+ +    +  A+    ++ +     + ++L GP G GK+ LA    ++          
Sbjct: 53  FDNFVSAGQLRNALEQATAFAAGFPAVKGLLLTGPVGVGKTHLAAAIVNELTKRMYVVVF 112

Query: 88  -SRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIH 134
            +  +  S I ++              + +   ++++D+     +D     L+ IIN ++
Sbjct: 113 GNSISIISRIKQTYGKTGESELDIINALTSVDLLVIDDLGKEKASDNTSAILYQIINRLY 172

Query: 135 QYDSSLLMTARTFPVSWGVCLPD----LCSRLKAATV 167
           + +  +++T           L +    + SRL    V
Sbjct: 173 EEERPVVITTNYTSDMLANQLGERGQAIVSRLTEMCV 209


>gi|299137091|ref|ZP_07030274.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601606|gb|EFI57761.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 447

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 34/199 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           ++  GP G GK+ LA I + +++++     A       I   K V++E     +F     
Sbjct: 59  LLFWGPPGVGKTTLAKIIARETQASFIEFSAVLSG---IKEIKQVMVEAEKAAEFGSRTI 115

Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           LF    H  N           +  +  L+ A T   S+ +    L SR     V  +   
Sbjct: 116 LFVDEIHRFNKAQQDAFLPYVERGTIRLIGATTENPSFEINAA-LLSR---CRVYTLRAL 171

Query: 174 DDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LS 225
             D +  ++ +   D        Q+ +++     I      S   A   ++ ++  A L+
Sbjct: 172 GQDEVVALLQRALQDAERGLGALQLEVEEGALEAIASY---SSGDARNALNALEVGAKLT 228

Query: 226 RGMG---ITRSLAAEVLKE 241
            G G   +T++LAAE L++
Sbjct: 229 EGRGEKLLTKALAAEALQQ 247


>gi|94497785|ref|ZP_01304351.1| transposase [Sphingomonas sp. SKA58]
 gi|94422674|gb|EAT07709.1| transposase [Sphingomonas sp. SKA58]
          Length = 280

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTR 108
           +IL GP G GKS LA           W        D  +  + +    +L++ +  +D  
Sbjct: 109 LILFGPPGGGKSHLAAAIGLALIENGWRVLFARTSDLVQKLQVARRELALEAAITKLDKY 168

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             ++L+D+  +  +  +   LF +I S      S+L+TA      W    PD
Sbjct: 169 HLLILDDLAYVAKDQAETSVLFELI-SARYERKSMLITANQPFGEWNRIFPD 219


>gi|310828857|ref|YP_003961214.1| hypothetical protein ELI_3289 [Eubacterium limosum KIST612]
 gi|308740591|gb|ADO38251.1| hypothetical protein ELI_3289 [Eubacterium limosum KIST612]
          Length = 446

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 76/188 (40%), Gaps = 34/188 (18%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDT 107
            RLI++        V+  GP G+GK+ LA I + ++++  +   A +     +  IL   
Sbjct: 46  YRLIEADK---LSSVVFYGPPGTGKTTLAKIIAHRTQAAFYELNAVTSGKKEITEILDKA 102

Query: 108 RKPVLLEDIDLLDF-NDTQLFHIINSIHQY--------DSSLLMTARTFPVSWGVCLPDL 158
           +  + + +   + F ++    H  N   Q            +L+ A T    + +  P L
Sbjct: 103 KDNLGIYNRKSILFIDEI---HRFNKAQQDALLPSVEGGLVILIGATTENPYFEINSP-L 158

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVF 211
            SR   +T+ +     DD ++ ++ +   D+       ++ +D++   ++      S   
Sbjct: 159 LSR---STIFEFKTLTDDEIKGLLRRAVTDKKKGYGSMKVKVDEEALDHLTAV---SNGD 212

Query: 212 AEKLVDKM 219
             + ++ +
Sbjct: 213 VRRALNAL 220


>gi|303233454|ref|ZP_07320122.1| putative chromosomal replication initiator protein DnaA [Atopobium
           vaginae PB189-T1-4]
 gi|302480462|gb|EFL43554.1| putative chromosomal replication initiator protein DnaA [Atopobium
           vaginae PB189-T1-4]
          Length = 698

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 32/178 (17%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILVGPSGSGKSCLANIWSD---KSR 89
            ++ D  +       A +                + +   SG GK+ L     +   ++ 
Sbjct: 345 KLTFDRFVQGEENMFAFQAAQQVACGINSQSYNPLFIYSKSGLGKTHLLRAIQNYIIQND 404

Query: 90  STRFSNIAKSLDSILIDTRKPVLLE----------DIDLLDFNDTQ-----------LFH 128
             R      + + +   TR    +E           +D+L  +D Q            F 
Sbjct: 405 PERVCIYKTATEFVDEYTRAWQSIEHKGALYERYKHVDVLIIDDIQNMRTAAGTIKFFFD 464

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLP--DLC--SRLKAATVVKISLPDDDFLEKVI 182
             N++      +++ A   P    +     D    SR+ +   V I +P+ +    +I
Sbjct: 465 TFNTLMASGKQIVLAADRSPQELQMGESKFDERETSRMDSGVTVTIQVPNYELKYNLI 522


>gi|312977419|ref|ZP_07789167.1| ATPase, AAA family [Lactobacillus crispatus CTV-05]
 gi|310895850|gb|EFQ44916.1| ATPase, AAA family [Lactobacillus crispatus CTV-05]
          Length = 420

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 28/191 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117
           ++L GP G+GK+ LA I + ++    F++   S+D+                 +L+++I 
Sbjct: 44  LLLWGPPGTGKTSLAQIIAKEND-YPFASFNASIDNKAQLNNIINAYKYQTFVLLIDEIH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            +  N            +    LL+ + T      +  P + SR     + + +   +D 
Sbjct: 103 RMTKNLQDFLLPY---LENGHVLLVGSTTENPIMSIV-PAVRSR---CQIFEFNPLTEDD 155

Query: 178 LEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           +  V+ K         D Q  ++K     I    +  L  A  +++ +   AL     IT
Sbjct: 156 IAAVLNKACTKVLKLVDHQ--VEKNSLNLIAAAADGDLRIALNILETV--HAL-NPKKIT 210

Query: 232 RSLAAEVLKET 242
            +      K+ 
Sbjct: 211 LANVKSFTKQQ 221


>gi|256850208|ref|ZP_05555637.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-1A-US]
 gi|256712845|gb|EEU27837.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-1A-US]
          Length = 420

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 28/191 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117
           ++L GP G+GK+ LA I + ++    F++   S+D+                 +L+++I 
Sbjct: 44  LLLWGPPGTGKTSLAQIIAKEND-YPFASFNASIDNKAQLNNIINAYKYQTLVLLIDEIH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            +  N            +    LL+ + T      +  P + SR     + + +   +D 
Sbjct: 103 RMTKNLQDFLLPY---LENGHVLLVGSTTENPIMSIV-PAVRSR---CQIFEFNPLTEDD 155

Query: 178 LEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           +  V+ K         D Q  ++K     I    +  L  A  +++ +   AL     IT
Sbjct: 156 IAAVLNKACTKVLKLVDHQ--VEKNSLNLIAAAADGDLRIALNILETV--HAL-NPKKIT 210

Query: 232 RSLAAEVLKET 242
            +      K+ 
Sbjct: 211 LANVKSFTKQQ 221


>gi|156101027|ref|XP_001616207.1| cell division cycle protein 48 homologue [Plasmodium vivax SaI-1]
 gi|148805081|gb|EDL46480.1| cell division cycle protein 48 homologue, putative [Plasmodium
           vivax]
          Length = 822

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+C+A   ++++ +  F                +N+ ++ +    +
Sbjct: 240 PPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 299

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ I      +++ A          
Sbjct: 300 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKTRGQVVVIAAT---NRQNSI 356

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD+   +++      + + +   +
Sbjct: 357 DPALR-RFGRFDREIDIGVPDDNGRFEIL--RIHTKNMKLSPDV 397



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D  
Sbjct: 513 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKA 569


>gi|294141065|ref|YP_003557043.1| ATPase [Shewanella violacea DSS12]
 gi|293327534|dbj|BAJ02265.1| ATPase, AAA family [Shewanella violacea DSS12]
          Length = 443

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 76/192 (39%), Gaps = 27/192 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++  GP G+GK+ LA + +  + +   R S +   +  I          +++       T
Sbjct: 52  MVFWGPPGTGKTTLAELVAHYANAHVERISAVTSGVKEIRAAIEHA---QNVAQSRGQRT 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + + + A T   S+ +    L SR +   + +++ 
Sbjct: 109 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSRARVYLIKRLT- 166

Query: 173 PDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            +D+ ++ V   +  D      RQ+ I  ++A  +    +     A  L++ M ++ ++ 
Sbjct: 167 -NDEIIQIVRQALIDDERGLGKRQLTIPDEVAEKLANVCDGDARKALNLIELMSDM-IAD 224

Query: 227 GMGITRSLAAEV 238
           G   T  +  EV
Sbjct: 225 GESFTEQMIIEV 236


>gi|262046401|ref|ZP_06019363.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-3A-US]
 gi|260573272|gb|EEX29830.1| recombination factor protein RarA [Lactobacillus crispatus
           MV-3A-US]
          Length = 421

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 28/191 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117
           ++L GP G+GK+ LA I + ++    F++   S+D+                 +L+++I 
Sbjct: 45  LLLWGPPGTGKTSLAQIIAKEND-YPFASFNASIDNKAQLNNIINAYKYQTLVLLIDEIH 103

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            +  N            +    LL+ + T      +  P + SR     + + +   +D 
Sbjct: 104 RMTKNLQDFLLPY---LENGHVLLVGSTTENPIMSIV-PAVRSR---CQIFEFNPLTEDD 156

Query: 178 LEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           +  V+ K         D Q  ++K     I    +  L  A  +++ +   AL     IT
Sbjct: 157 IAAVLNKACTKVLKLVDHQ--VEKNSLNLIAAAADGDLRIALNILETV--HAL-NPKKIT 211

Query: 232 RSLAAEVLKET 242
            +      K+ 
Sbjct: 212 LANVKSFTKQQ 222


>gi|42519086|ref|NP_965016.1| recombination factor protein RarA [Lactobacillus johnsonii NCC 533]
 gi|41583373|gb|AAS08982.1| hypothetical protein LJ_1160 [Lactobacillus johnsonii NCC 533]
          Length = 420

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 30/193 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVL--LEDIDL 118
           ++L GP G+GK+ LA I + +        +    N AK +  I     +  +  +++I  
Sbjct: 44  LLLWGPPGTGKTSLAQIIAREYDYPLATFNASVDNKAKLMQIINTYPYQSFVLLIDEIHR 103

Query: 119 --LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                 D  L ++ N        LL+ A T      +  P + SR     + +    DD 
Sbjct: 104 MTTTLQDYLLPYLEN-----GQILLIGATTENPIMSIV-PAVRSR---CQIFEFETLDDK 154

Query: 177 FLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            +  V+++         ++QI  DK+    I +  +  L  A  L++ +       G  I
Sbjct: 155 DISHVLIRALKEVFHLEEKQI--DKEAINIIARSADGDLRVALNLLETIHA---INGDEI 209

Query: 231 TRSLAAEVLKETQ 243
           +     E +K   
Sbjct: 210 SIESVKEFVKGQH 222


>gi|13475199|ref|NP_106763.1| transposase [Mesorhizobium loti MAFF303099]
 gi|14025950|dbj|BAB52549.1| transposase [Mesorhizobium loti MAFF303099]
          Length = 228

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 23/134 (17%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------WS-------DKS 88
           +  A   A+   DSW       ++L GP G GKS LA+          W        D  
Sbjct: 88  ISKAQVMAITAGDSWLE-KGANLLLFGPPGGGKSHLASAIGLALIETGWRVMFTRTTDLV 146

Query: 89  RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143
           +  + +     L++ +  +D    ++L+D+  +  +  +   LF +I S      SLL+T
Sbjct: 147 QKLQVARRELGLEAAINRLDRFHLLILDDLAYVTKDQAETSVLFELI-SARYERRSLLIT 205

Query: 144 ARTFPVSWGVCLPD 157
           A      WG   PD
Sbjct: 206 ANQPFGEWGKVFPD 219


>gi|291277124|ref|YP_003516896.1| helicase-like protein [Helicobacter mustelae 12198]
 gi|290964318|emb|CBG40168.1| helicase-like protein [Helicobacter mustelae 12198]
          Length = 394

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 22/179 (12%)

Query: 70  VGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRK--------PVLLEDIDLL 119
            GP G GK+ LA I + +       F+ +  +L+S+    ++         V ++++  L
Sbjct: 44  YGPPGVGKTTLARIVAKELEMPFLEFNGVDFALESLRCALKEYKNTLIKPVVFIDEVHRL 103

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
             N  +   ++  +  + + +L  +   P  + +    L SR   + ++++       L 
Sbjct: 104 SKNQQEF--LLPVMENHQAIILGASTQNP--FSILTNALRSR---SILLELHPLKSHHLR 156

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           +++ K        I      Y+   M+ S   A  ++  +D     +   IT  L   +
Sbjct: 157 EILQKALDLYPCKITSDARVYL---MDSSNGDARAMLHLLDIA--MQADEITLPLLKSI 210


>gi|307728952|ref|YP_003906176.1| AAA ATPase central domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583487|gb|ADN56885.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1003]
          Length = 437

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 20/189 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +D   +   +    ++ S + D R+ V    +   + + T +
Sbjct: 48  MILWGPPGVGKTTLARLMADAFHAQFIA--LSAVLSGVKDIREAVETAQVHRANGHQTLV 105

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +    + + A T   S+ V    L SR   A V  +   D
Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLD 161

Query: 175 DDFLEKVIVK-MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITR 232
           +D L +++ +       +    +    ++   +         ++ +   A  +    I  
Sbjct: 162 EDELRELLARAQHELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKTTEIDG 221

Query: 233 SLAAEVLKE 241
           +L    L E
Sbjct: 222 ALLGSALAE 230


>gi|227878587|ref|ZP_03996511.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|293380972|ref|ZP_06627004.1| recombination factor protein RarA [Lactobacillus crispatus 214-1]
 gi|227861822|gb|EEJ69417.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus
           JV-V01]
 gi|290922469|gb|EFD99439.1| recombination factor protein RarA [Lactobacillus crispatus 214-1]
          Length = 420

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 28/191 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117
           ++L GP G+GK+ LA I + ++    F++   S+D+                 +L+++I 
Sbjct: 44  LLLWGPPGTGKTSLAQIIAKEND-YPFASFNASIDNKAQLNNIINAYKYQTLVLLIDEIH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            +  N            +    LL+ + T      +  P + SR     + + +   +D 
Sbjct: 103 RMTKNLQDFLLPY---LENGHVLLVGSTTENPIMSIV-PAVRSR---CQIFEFNPLTEDD 155

Query: 178 LEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           +  V+ K         D Q  ++K     I    +  L  A  +++ +   AL     IT
Sbjct: 156 IAAVLNKACTKVLKLVDHQ--VEKNSLNLIAAAADGDLRIALNILETV--HAL-NPKKIT 210

Query: 232 RSLAAEVLKET 242
            +      K+ 
Sbjct: 211 LANVKSFTKQQ 221


>gi|118617371|ref|YP_905703.1| recombination factor protein RarA [Mycobacterium ulcerans Agy99]
 gi|118569481|gb|ABL04232.1| conserved alanine, valine and leucine rich protein [Mycobacterium
           ulcerans Agy99]
          Length = 452

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 48/214 (22%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRL----IDS--------WPSWPSRVVI--------- 68
           F  P     S   L V +    AVR+    +D          P  P R ++         
Sbjct: 10  FDLPGAPQHSDHALEVSAGAPLAVRMRPESLDEVVGQGHLLAPGAPLRRLVEGSGVASVI 69

Query: 69  LVGPSGSGKSCLANIWSDKSR----STRFSNIAKSLDSILIDTRKPVL---------LED 115
           L GP GSGK+ LA + S  +     +    +        +I+T + VL         +++
Sbjct: 70  LYGPPGSGKTTLAALISHATGRRFEALSALSAGVKDVRAVIETARQVLRRGEQTVLFIDE 129

Query: 116 IDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +          L     S  +    LL+ A T   S+ V  P L SR   + ++++    
Sbjct: 130 VHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLHPLG 181

Query: 175 DDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203
            + +  V+ +   D R +     I       +VQ
Sbjct: 182 AEDIRAVVQRAAQDPRGLGGRVAIAPDATDLLVQ 215


>gi|312600974|gb|ADQ90229.1| Chromosomal replication initiator protein dnaA [Mycoplasma
           hyopneumoniae 168]
          Length = 463

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 37/185 (20%)

Query: 67  VILVGPSGSGKSCLANI--------------------------WSDKSRSTRFSNIAKSL 100
           + + GPSG GK+   N                           W    ++ + S     L
Sbjct: 148 IFISGPSGIGKTHFINAIGNLLVEKQKKVFYINDYKFISCVSSWMQNGQNEKISEFLNWL 207

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             +        L +DI  L            I+N   + D ++++T+   P   G     
Sbjct: 208 SQV-----DAFLFDDIQGLANKQQTSIVALEILNRFIEEDKTVIITSDKSPSLLGGFEER 262

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---KKLAAYIVQRMERSLVFAEK 214
             +R  +   +K++ P  +   ++      + ++           ++ +    S+   E 
Sbjct: 263 FITRFSSGLHIKLNKPKKEDFLRIFKHKLVEEKLEKHIWTNDAFEFLSKHFRNSIRELEG 322

Query: 215 LVDKM 219
            +  +
Sbjct: 323 ALKSI 327


>gi|144227417|gb|AAZ44095.2| chromosomal replication initiator protein [Mycoplasma hyopneumoniae
           J]
 gi|144575230|gb|AAZ53378.2| chromosomal replication initiator protein [Mycoplasma hyopneumoniae
           7448]
          Length = 463

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 37/185 (20%)

Query: 67  VILVGPSGSGKSCLANI--------------------------WSDKSRSTRFSNIAKSL 100
           + + GPSG GK+   N                           W    ++ + S     L
Sbjct: 148 IFISGPSGIGKTHFINAIGNLLVEKQKKVFYINDYKFISCVSSWMQNGQNEKISEFLNWL 207

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             +        L +DI  L            I+N   + D ++++T+   P   G     
Sbjct: 208 SQV-----DAFLFDDIQGLANKQQTSIVALEILNRFIEEDKTVIITSDKSPSLLGGFEER 262

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---KKLAAYIVQRMERSLVFAEK 214
             +R  +   +K++ P  +   ++      + ++           ++ +    S+   E 
Sbjct: 263 FITRFSSGLHIKLNKPKKEDFLRIFKHKLVEEKLEKHIWTNDAFEFLSKHFRNSIRELEG 322

Query: 215 LVDKM 219
            +  +
Sbjct: 323 ALKSI 327


>gi|71893360|ref|YP_278806.1| chromosomal replication initiation protein [Mycoplasma
           hyopneumoniae J]
 gi|72080343|ref|YP_287401.1| chromosomal replication initiation protein [Mycoplasma
           hyopneumoniae 7448]
          Length = 466

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 37/185 (20%)

Query: 67  VILVGPSGSGKSCLANI--------------------------WSDKSRSTRFSNIAKSL 100
           + + GPSG GK+   N                           W    ++ + S     L
Sbjct: 151 IFISGPSGIGKTHFINAIGNLLVEKQKKVFYINDYKFISCVSSWMQNGQNEKISEFLNWL 210

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             +        L +DI  L            I+N   + D ++++T+   P   G     
Sbjct: 211 SQV-----DAFLFDDIQGLANKQQTSIVALEILNRFIEEDKTVIITSDKSPSLLGGFEER 265

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---KKLAAYIVQRMERSLVFAEK 214
             +R  +   +K++ P  +   ++      + ++           ++ +    S+   E 
Sbjct: 266 FITRFSSGLHIKLNKPKKEDFLRIFKHKLVEEKLEKHIWTNDAFEFLSKHFRNSIRELEG 325

Query: 215 LVDKM 219
            +  +
Sbjct: 326 ALKSI 330


>gi|54019970|ref|YP_115516.1| chromosomal replication initiation protein [Mycoplasma
           hyopneumoniae 232]
 gi|53987143|gb|AAV27344.1| chromosomal replication initiator protein [Mycoplasma hyopneumoniae
           232]
          Length = 463

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 37/185 (20%)

Query: 67  VILVGPSGSGKSCLANI--------------------------WSDKSRSTRFSNIAKSL 100
           + + GPSG GK+   N                           W    ++ + S     L
Sbjct: 148 IFISGPSGIGKTHFINAIGNLLVEKQKKVFYINDYKFISCVSSWMQNGQNEKISEFLNWL 207

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             +        L +DI  L            I+N   + D ++++T+   P   G     
Sbjct: 208 SQV-----DAFLFDDIQGLANKQQTSIVALEILNRFIEEDKTVIITSDKSPSLLGGFEER 262

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---KKLAAYIVQRMERSLVFAEK 214
             +R  +   +K++ P  +   ++      + ++           ++ +    S+   E 
Sbjct: 263 FITRFSSGLHIKLNKPKKEDFLRIFKHKLVEEKLEKHIWTNDAFEFLSKHFRNSIRELEG 322

Query: 215 LVDKM 219
            +  +
Sbjct: 323 ALKSI 327


>gi|94985501|ref|YP_604865.1| recombination factor protein RarA [Deinococcus geothermalis DSM
           11300]
 gi|94555782|gb|ABF45696.1| AAA ATPase, central region [Deinococcus geothermalis DSM 11300]
          Length = 451

 Score = 49.8 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 26/190 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I  GP G GK+ LA + + +  +      A S  + + D R+ V+  +        T
Sbjct: 65  GSLIFWGPPGVGKTTLARLIASEVGAHFIPLSAVS--AGVKDVREAVMEAERLRARGQPT 122

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     L+ A T   S+ V  P L SR   A  + +  
Sbjct: 123 ILFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARTLVLEP 178

Query: 173 PDDDFLEKVIVKMFAD-RQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
              + +  ++ +  AD R +       +    + +  +     A + +  ++  A +   
Sbjct: 179 LSQEDVRGLLERALADPRGLPGVAAQPEALDLLARLAD---GDARRALGTLEVAA-TLAN 234

Query: 229 GITRSLAAEV 238
            +T     E 
Sbjct: 235 PVTSEAVREA 244


>gi|291295124|ref|YP_003506522.1| AAA ATPase central domain-containing protein [Meiothermus ruber DSM
           1279]
 gi|290470083|gb|ADD27502.1| AAA ATPase central domain protein [Meiothermus ruber DSM 1279]
          Length = 432

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 14/181 (7%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            IL GP GSGK+ LA + +        +  A +     I        E   L+ F D   
Sbjct: 54  FILWGPPGSGKTTLARLMAQGVGRAMVALSAVNAGLKDIKEVVAQAQEQGGLVLFLDEI- 112

Query: 127 FHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            H  N           +     L+ A T   S+ V  P L SR   A V  +     + +
Sbjct: 113 -HRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARVYVLEPLGQEAI 167

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           ++++ +     Q    +     +    + ++  A + +  ++  A      ++ + A E 
Sbjct: 168 QRLLERALHHPQGLPAQAEPEALHLIAQAAMGDARRALSALELAASLGEGQVSVAAAREA 227

Query: 239 L 239
           L
Sbjct: 228 L 228


>gi|114332440|ref|YP_748662.1| recombination factor protein RarA [Nitrosomonas eutropha C91]
 gi|114309454|gb|ABI60697.1| Recombination protein MgsA [Nitrosomonas eutropha C91]
          Length = 438

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 32/194 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP GSGK+ LA + +    +   +  A     K +   +   R  +          
Sbjct: 51  MILWGPPGSGKTTLARLMAQAFDTEFIAISAVLSGVKDIREAIERARFAL------QHTG 104

Query: 122 NDTQLF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVV 168
             T LF    H  N   Q D+ L      L+T   A T   S+ V    L SR   A V 
Sbjct: 105 RSTLLFVDEVHRFNKAQQ-DAFLPHVEQGLITFIGATTENPSFEVNGA-LLSR---AQVY 159

Query: 169 KISLPDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            ++   D  L ++  +    A   +  D      +V+  +        +++++ + A + 
Sbjct: 160 TLNALTDPELHQLFERACKIAISNLQFDPDAVELLVKFADGDARRLLNMLEQVKHAADTE 219

Query: 227 GM-GITRSLAAEVL 239
               I  +    VL
Sbjct: 220 KTVKIDIAYLNRVL 233


>gi|258593286|emb|CBE69625.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [NC10 bacterium 'Dutch sediment']
          Length = 423

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 20/141 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP GSGK+ LA + +++ ++T     A +  S + + ++ ++    +      T
Sbjct: 32  PSLILWGPPGSGKTTLAFLLAERCKATFQPFSAVT--SGIKEIKEVIVRAQQERGYGRRT 89

Query: 125 QLF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N   Q          + +L+ A T   S+ V  P L SR   A VV +  
Sbjct: 90  LLFIDEIHRFNKAQQDAFLPHVEGGTIVLIGATTENPSFEVIAP-LLSR---AKVVTLRP 145

Query: 173 PDDDFLEKVIVKMFAD--RQI 191
             +D L  ++ +   D  R +
Sbjct: 146 LAEDALMLILRRALDDQERGL 166


>gi|169629937|ref|YP_001703586.1| hypothetical protein MAB_2853c [Mycobacterium abscessus ATCC 19977]
 gi|169241904|emb|CAM62932.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 451

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 31/176 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------- 112
           VIL GP G+GK+ LA++ S  +          S   K + +++ ++R  +          
Sbjct: 65  VILYGPPGTGKTTLASLISGATGRRFEALSALSAGVKEVRAVIENSRTALAYHGQQTVLF 124

Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++++          L     +  +    LL+ A T   S+ V  P L SR   + ++++ 
Sbjct: 125 IDEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLQ 176

Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
              D+ + +V+ +  AD R +     +D +  + +VQ    +   A + +  ++  
Sbjct: 177 PLADNDIREVLTRAIADERGLGGAVAVDPEALSLLVQ---LAAGDARRALTALEVA 229


>gi|15638996|ref|NP_218442.1| chromosomal replication initiation protein [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025237|ref|YP_001933009.1| chromosomal replication initiation protein [Treponema pallidum
           subsp. pallidum SS14]
 gi|6014982|sp|O83047|DNAA_TREPA RecName: Full=Chromosomal replication initiator protein DnaA
 gi|226735862|sp|B2S1V1|DNAA_TREPS RecName: Full=Chromosomal replication initiator protein DnaA
 gi|3322256|gb|AAC64999.1| chromosomal replication initiator protein (dnaA) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189017812|gb|ACD70430.1| chromosomal replication initiation protein DnaA [Treponema pallidum
           subsp. pallidum SS14]
 gi|291059421|gb|ADD72156.1| chromosomal replication initiator protein DnaA [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 464

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 77/238 (32%), Gaps = 36/238 (15%)

Query: 38  ISRDDLLVHS----AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----SR 89
            + ++ +       +   A+  +   P      +++ G  G GK+ L      +    + 
Sbjct: 123 YTFENFVSGEETKFSHSAAIS-VSKNPGTSYNPLLIYGGVGLGKTHLMQAIGHEIYKTTD 181

Query: 90  STRFSNIAKSLDSILID----------------TRKPVLLEDI---DLLDFNDTQLFHII 130
                  A++  +  I                 T   +L++DI   +  D    +LF+  
Sbjct: 182 LNVIYVTAENFGNEFISTLLNKKTQDFKKKYRYTADVLLIDDIHFFENKDGLQEELFYTF 241

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           N + +    ++ T              L SR        +++P  +    +++K   +  
Sbjct: 242 NELFEKKKQIIFTCDRPVQELKNLSSRLRSRCSRGLSTDLNMPCFETRCAILIKKIQNYN 301

Query: 191 -------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
                  I I   +   + + +  ++   E  + K+    +     IT  +   +LKE
Sbjct: 302 STYPHKAIHISDDVVRLVSENISSNIRDLEGALTKI-IAFIEVSGSITIDIVPSLLKE 358


>gi|32034563|ref|ZP_00134719.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 428

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 35/203 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 34  MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 89

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 90  LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 143

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  + +V+     D  R +     +I+  +   +   +     FA   ++ M ++A
Sbjct: 144 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 203

Query: 224 --LSRGMGITRSLAAEVLKETQQ 244
              S+G  + ++L AEVL E Q 
Sbjct: 204 EISSQGKRLNKALLAEVLGERQA 226


>gi|296242922|ref|YP_003650409.1| CDC48 subfamily AAA family ATPase [Thermosphaera aggregans DSM
           11486]
 gi|296095506|gb|ADG91457.1| AAA family ATPase, CDC48 subfamily [Thermosphaera aggregans DSM
           11486]
          Length = 744

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G+GK+ LA   +++  +                     + K  +    +
Sbjct: 221 PPKGILLYGPPGTGKTLLAKALANEIGAYFITINGPEIMSKFYGESEERLRKIFEEAEAN 280

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 281 APSVIFIDEIDSIAPKREEVTGEVEKRVVAQLLTLMDGLKERGRVIVIGATNRPDALD-- 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD     +++      R + + + +
Sbjct: 339 -PALRRPGRFDREIEIPPPDKKARREILAVH--TRNMPLSEDV 378



 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 42/177 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G+GK+ LA   + +S +                     I +      + 
Sbjct: 495 PPKGILLFGPPGTGKTLLAKAVATESGANFITVRGPEVLSKWVGESEKAIRQIFRRAKMV 554

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V  ++ID +                 QL   ++ I      +++ A   P      
Sbjct: 555 APSVVFFDEIDSIAGARGSDPSGVIDRIVNQLLTEMDGIQPLRKVVVIAATNRPDLLDPA 614

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME 206
           L  L      RL     V +  PD     +V +     R+  I + +    + +R E
Sbjct: 615 L--LRPGRFDRL-----VYVPPPD--LRARVEIFKVHTRRTPIAEDVNIEELARRTE 662


>gi|254821817|ref|ZP_05226818.1| recombination factor protein RarA [Mycobacterium intracellulare
           ATCC 13950]
          Length = 454

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 30/176 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
            IL GP GSGK+ LA + S  +          S   K + +++   R  +L        +
Sbjct: 68  AILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIEKARTALLHGEQTVLFI 127

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     S  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 128 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 179

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              D +  V+ +   D R +     +       ++ R+  +   A + +  ++  A
Sbjct: 180 LSADDIRTVVQRAIDDPRGLGGQVAVAPDAVD-LLVRL--AAGDARRALTALEVAA 232


>gi|303244483|ref|ZP_07330818.1| AAA family ATPase, CDC48 subfamily [Methanothermococcus okinawensis
           IH1]
 gi|302485181|gb|EFL48110.1| AAA family ATPase, CDC48 subfamily [Methanothermococcus okinawensis
           IH1]
          Length = 746

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 66/169 (39%), Gaps = 34/169 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 226 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEEE 285

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   V +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 286 SPSIVFIDEIDAIAPKRDEASGEVERRMVAQLLTLMDGLESRGQVVVIAATNRPDALD-- 343

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIV 202
            P L    +    + I +PD    ++++      R + + + +   Y+ 
Sbjct: 344 -PALRRPGRFDREITIGVPDRKGRKEILQ--IHTRNMPLAEDVDLDYLA 389



 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++S++   S
Sbjct: 499 PPKGVLLFGPPGTGKTLLAKAVANESQANFIS 530


>gi|297567908|ref|YP_003686878.1| IstB domain protein ATP-binding protein [Meiothermus silvanus DSM
           9946]
 gi|296852357|gb|ADH65370.1| IstB domain protein ATP-binding protein [Meiothermus silvanus DSM
           9946]
          Length = 248

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 31/179 (17%)

Query: 20  QPKNKEEQLFFSFPRCLGISR-DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKS 78
           + + + E+   + P      R +  L   A ++A+             + L G  G GK+
Sbjct: 64  RGRVESERFVAALPPRYRSCRLEGYLPTPANQEALNACRELRM--GDFLYLHGRPGRGKT 121

Query: 79  CLA-----NIWSDKSRSTRFSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFN 122
            LA      +     R+  F   A  ++ I    R             ++L+D   +  +
Sbjct: 122 HLAVGAAYRLARQGYRA-LFVGEAAYMEEIYRSFRGGGEPPDYTWAEVLVLDDFGKIKPS 180

Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL---PD-----LCSRLKAATVVKI 170
           D     L+ +I   + +  +L++T+   P +    +    D     L SRL    VV++
Sbjct: 181 DFAYQSLYALIEHANAHCKTLIVTSNYEPGTAACRVSGSNDEAAEALLSRLAQGYVVEV 239


>gi|290558951|gb|EFD92336.1| AAA family ATPase, CDC48 subfamily [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
 gi|290559274|gb|EFD92611.1| AAA family ATPase, CDC48 subfamily [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 764

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P R V+L GP G+GK+ LA   +D+S +   +            +  K L  I  D    
Sbjct: 247 PPRGVLLYGPPGAGKTLLARAVADESDAHFITINGPEVMSKWVGDAEKKLREIFDDAEKN 306

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 307 APSIIFIDEIDAIATKREESIGEVEHRVVSQLLTLMDGLKSRGKVIVIAATNRPNAIDPA 366

Query: 155 L 155
           L
Sbjct: 367 L 367


>gi|212224243|ref|YP_002307479.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
 gi|212009200|gb|ACJ16582.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
          Length = 838

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 74/196 (37%), Gaps = 41/196 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  I  D  + 
Sbjct: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKDAEEN 304

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 305 APSIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALD-- 362

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQRME 206
            P L    +    +++ +PD    ++++      R + ++          +   ++++  
Sbjct: 363 -PALRRPGRFDREIEVGVPDKKGRKEILQ--IHTRGMPLEPDYDKVTVLKVLRELLRKET 419

Query: 207 RSLVFAEKLVDKMDNL 222
                 ++L+++++  
Sbjct: 420 FDEERLKRLIERVEEA 435



 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 73/205 (35%), Gaps = 47/205 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P R V+L GP G+GK+ LA   + +S +                   K +  I    R+ 
Sbjct: 580 PPRGVLLYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKRIREIFRKARQA 639

Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL   ++ I +    +++ A   P      
Sbjct: 640 APTVIFIDEIDAIAPARGSDMNRVTDRLINQLLTEMDGIEKNSGVVVIAATNRPDIIDPA 699

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208
           L  L      RL     + +  PD+    +++      R++ + K +    + ++ E  S
Sbjct: 700 L--LRPGRFDRL-----ILVPAPDEKARLEILKVHT--RRVPLAKDVNLRELAKKTEGYS 750

Query: 209 LVFAEKLVDKMDNLAL-SRGMGITR 232
               E LV      AL +    I++
Sbjct: 751 GADLEALVR---EAALIAMRRAISK 772


>gi|281357852|ref|ZP_06244338.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315799|gb|EFA99826.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 455

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 32/193 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           VIL GP G+GK+ LA + +  S S   R S +  S+  +  +  + V       ++   T
Sbjct: 66  VILSGPPGTGKTSLAEVIARVSNSEFVRLSGVTSSVADVRKEIAQAVT---RRRINGRRT 122

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  +           +  +  L+ A T    + V    L SR   + V  +  
Sbjct: 123 ILFVDEIHRFSRSQQDSLLPDVENGNVRLIGATTHNPQFYVVGA-LLSR---SLVFLLQP 178

Query: 173 PDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRME----RSLVFAEKLVDKMDNL 222
             +D +  ++ +  AD      R++ ++   A +I +  E    RSL   E  V   D  
Sbjct: 179 LTEDDILTLLRRAVADPRSFPGRRVELEPDAAEFIARTCEGDGRRSLNALEIAVLTSDPG 238

Query: 223 ALSRGMGITRSLA 235
           A      +TR +A
Sbjct: 239 A-DGVTRVTREVA 250


>gi|225021329|ref|ZP_03710521.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945711|gb|EEG26920.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 451

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 30/176 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           VIL GP G+GK+ +A++ S  +                  + I ++   ++      + +
Sbjct: 67  VILYGPPGTGKTTIASLISQATARKFVGLSALNSGVKEVRAVIDQARRDLIQGMSTVLFI 126

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +    LL+ A T   S+ V  P L SR   + +VK+  
Sbjct: 127 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLIVKLES 178

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            DD  +  V+ +   D R +             +V     S   A + +  ++  A
Sbjct: 179 LDDASVRAVLRRALVDERGLGGRITASDAAIDQLVA---LSGGDARRSLTYLEAAA 231


>gi|308180384|ref|YP_003924512.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045875|gb|ADN98418.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 420

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDIDL 118
           +IL GP G+GK+ LA I + +      +  A + +   +             +L+++I  
Sbjct: 44  LILWGPPGTGKTSLAQIIASQDDYPFVAFTASTENKAQLTKAIAQYPEQSFVLLIDEIHR 103

Query: 119 L--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           +     D  L ++ N        +++   T        +P + SR     + +     D 
Sbjct: 104 MTKTLQDFLLPYLEN------GHVMLIGSTTENPIMSIVPAIRSR---CQIFEFQPLSDT 154

Query: 177 FLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            +E  + +         D Q  +D K    I    E  L  A  +++ +   A+ +   I
Sbjct: 155 DIEIALRRAVTDIYNLTDDQ--VDAKALNLIAISAEGDLRIALNILETL--HAIDQKQ-I 209

Query: 231 TRSLAAEVLKETQ 243
           T +      ++  
Sbjct: 210 TVAAVQHFAQQQH 222


>gi|268315897|ref|YP_003289616.1| AAA ATPase central domain-containing protein [Rhodothermus marinus
           DSM 4252]
 gi|262333431|gb|ACY47228.1| AAA ATPase central domain protein [Rhodothermus marinus DSM 4252]
          Length = 458

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA I +  SR+   +  A       I        E +  L    T L
Sbjct: 56  LIFYGPPGTGKTTLARIIARTSRAHFTALNAVLAGVKDIRDAIEAAQERL-RLHQQRTIL 114

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + + + A T    + V  P L SR   + V ++    
Sbjct: 115 FIDEVHRFNKAQQDALLPHVENGTVIFIGATTENPYFEVIKP-LVSR---SRVFELKPLT 170

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            + L ++  +  AD       R + +D +   +++             ++
Sbjct: 171 PEHLRRIAEQALADPERGYGRRNVVVDPEALDHLIDVANGDARSLLNALE 220


>gi|193216561|ref|YP_001999803.1| recombination factor protein RarA [Mycoplasma arthritidis 158L3-1]
 gi|193001884|gb|ACF07099.1| ATPase, related to the helicase subunit of the Holliday junction
           resolvase [Mycoplasma arthritidis 158L3-1]
          Length = 402

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 84/209 (40%), Gaps = 17/209 (8%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAK 98
           DD + + +       I +      R  I  G  G+GK+ ++ I +   K     F+   +
Sbjct: 15  DDFVCNDSQRFLFEKIIANDD--FRSFIFYGKPGTGKTTISYILASSLKVSFDYFNAAIE 72

Query: 99  SLDSIL--IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             + ++  +   K +++++I  L+ +   +  ++  I     ++  T    P  + V  P
Sbjct: 73  KKEDLVAKLKLNKILIIDEIHRLNKDKQDI--LLPYIENDLITIYATTTENP-YFKVN-P 128

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF--IDKKLAAYIVQRMERSLVFAEK 214
            L SR     +V+I  P  D L K + K+  + Q+   +  ++  +I  +       A  
Sbjct: 129 ALRSR---CAIVEIKNPSIDDLSKQLKKIALNNQLDSNLSDEIYHFIASQSNGDYRSAIN 185

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            +D +    LS+   +T     ++L   Q
Sbjct: 186 SLDLIST--LSKTKKLTLDEIKKILPAIQ 212


>gi|94497714|ref|ZP_01304281.1| transposase [Sphingomonas sp. SKA58]
 gi|94422763|gb|EAT07797.1| transposase [Sphingomonas sp. SKA58]
          Length = 249

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTR 108
           +IL GP G GKS LA           W        D  +  + +    +L++ +  +D  
Sbjct: 78  LILFGPPGGGKSHLAAAIGLALIENGWRVLFARTSDLVQKLQVARRELALEAAITKLDKY 137

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             ++L+D+  +  +  +   LF +I S      S+L+TA      W    PD
Sbjct: 138 HLLILDDLAYVAKDQAETSVLFELI-SARYERKSMLITANQPFGEWNRIFPD 188


>gi|213401064|gb|ACJ47180.1| chromosomal replication initiation protein [Wolbachia endosymbiont
           of Coptotermes acinaciformis]
          Length = 135

 Score = 49.8 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SRL    V  I+    +    ++        +++   +  ++ + +
Sbjct: 1   RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMSMYVPDDVLEFLARNI 60

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + ++   E  ++K+ + +L  G  +T   A+E L +  + +
Sbjct: 61  KSNIRELEGALNKVAHTSLI-GRSMTVESASETLADLLRSN 100


>gi|71894026|ref|YP_278134.1| chromosomal replication initiator protein [Mycoplasma synoviae 53]
 gi|71850814|gb|AAZ43423.1| chromosomal replication initiator protein [Mycoplasma synoviae 53]
          Length = 456

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 83/225 (36%), Gaps = 41/225 (18%)

Query: 31  SFPRCLG-ISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSD 86
            F       + D+    +  E A+ ++ +  +     + +  L G SGSGKS L +  ++
Sbjct: 114 DFGIKNKNYTFDNFFKSTFNELALEVLKNSLNETGEFNNIYFLCGKSGSGKSHLLSAIAN 173

Query: 87  KSRSTRFSNIAKSLDSILIDTRKPVLLE--------------DIDLLDFND--------- 123
           +++    S +     ++  +    VL E              + D++ F+D         
Sbjct: 174 EAKKQNKSCVYIQ-PALFSNKITQVLFENNSLTKQELNNFFVNADVILFDDFDDYGEGKK 232

Query: 124 ----TQLFHII-NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
                 + +II N I+    +++ +   +     +    L +RL +   V I  P     
Sbjct: 233 KGTKNFILNIIENRINLNKLTIIASKTEYKKLKSLFDEKLFNRLGSGIKVSIESPKLSER 292

Query: 179 EKVIV----KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +  +     K+F      +D++   +I+     S     ++V+ +
Sbjct: 293 KSFLQFLNPKLFE----VLDEQSIEFILFNTSNSNWNLIQIVNNL 333


>gi|121998175|ref|YP_001002962.1| recombination factor protein RarA [Halorhodospira halophila SL1]
 gi|121589580|gb|ABM62160.1| Recombination protein MgsA [Halorhodospira halophila SL1]
          Length = 427

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 31/151 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQ 125
           +IL GP GSGK+ LA + ++ + +        S  +  +   +  + E  DL      T 
Sbjct: 46  MILWGPPGSGKTTLAGLVAEHAEARFL---TLSAVAAGVREIRAAMAEATDLWQAGRRTV 102

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q        D +++    T              L SR   A V  + 
Sbjct: 103 LFVDEVHRFNKAQQDAFLPHVEDGTVVFVGATTENPSFELNKA---LLSR---ARVYMLR 156

Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDK 195
             D+  L  ++ +  +D       RQ+ + +
Sbjct: 157 ALDEAALTNLLERALSDPERGLGGRQLQVTE 187


>gi|145635701|ref|ZP_01791396.1| predicted ATPase [Haemophilus influenzae PittAA]
 gi|145267024|gb|EDK07033.1| predicted ATPase [Haemophilus influenzae PittAA]
          Length = 446

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223
                 +E+V+ +   D  R      + +++ L   + + +      A   ++ M ++A 
Sbjct: 164 SLTTAEIEQVLQQAIEDPERGLGKERLILEENLLQVLGEYVNGDARLALNCLELMVDMAE 223

Query: 224 -LSRGMGITRSLAAEVLKETQQ 244
               G  I R+L  EVL E Q 
Sbjct: 224 ETENGKKIDRTLLKEVLGERQA 245


>gi|300767164|ref|ZP_07077076.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300494983|gb|EFK30139.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 422

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDIDL 118
           +IL GP G+GK+ LA I + +      +  A + +   +             +L+++I  
Sbjct: 46  LILWGPPGTGKTSLAQIIASQDDYPFVAFTASTENKAQLTKAIAQYPEQSFVLLIDEIHR 105

Query: 119 L--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           +     D  L ++ N        +++   T        +P + SR     + +     D 
Sbjct: 106 MTKTLQDFLLPYLEN------GHVMLIGSTTENPIMSIVPAIRSR---CQIFEFQPLSDT 156

Query: 177 FLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            +E  + +         D Q  +D K    I    E  L  A  +++ +   A+ +   I
Sbjct: 157 DIEIALRRAVTDIYNLTDDQ--VDAKALNLIAISAEGDLRIALNILETL--HAIDQKQ-I 211

Query: 231 TRSLAAEVLKETQ 243
           T +      ++  
Sbjct: 212 TVAAVQHFAQQQH 224


>gi|47076495|dbj|BAD18155.1| transposase B of IS643 [Bacillus halodurans]
          Length = 255

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GP G GK+ +A     ++    F     ++  ++                  I   
Sbjct: 105 LILLGPPGIGKTHIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 164

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             V+++D+  +  +  +    FH+IN +++  SS+++T+   P  WG  + D
Sbjct: 165 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 215


>gi|260906747|ref|ZP_05915069.1| recombination factor protein RarA [Brevibacterium linens BL2]
          Length = 421

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 24/169 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           ++L GP G GK+ +A + ++++       S  FS +A+ L  +     K   +    +L 
Sbjct: 48  MVLWGPPGCGKTTIARLLAERTNLVFESVSATFSGVAE-LRKVFQSAAKRREIGQGTMLF 106

Query: 121 FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            ++    H  N           +  + +L+ A T   S+ +    L SR     V  +  
Sbjct: 107 VDEI---HRFNRAQQDSFLPYVEDGTIVLVGATTENPSFELNSA-LLSR---CQVFVLKR 159

Query: 173 PDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            D++ L  +I +     +R++ +D +    +V   +    +   L++++
Sbjct: 160 LDEEALTTLITRAEETTERELPLDAQARHALVAMADGDGRYLLNLIEQL 208


>gi|15616528|ref|NP_244834.1| transposase (23) [Bacillus halodurans C-125]
 gi|10176591|dbj|BAB07685.1| transposase (23) [Bacillus halodurans C-125]
 gi|47076480|dbj|BAD18145.1| transposase B of IS643 [Bacillus halodurans]
          Length = 254

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GP G GK+ +A     ++    F     ++  ++                  I   
Sbjct: 104 LILLGPPGIGKTHIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 163

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             V+++D+  +  +  +    FH+IN +++  SS+++T+   P  WG  + D
Sbjct: 164 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 214


>gi|156085956|ref|XP_001610387.1| 26S protease regulatory subunit 6A [Babesia bovis T2Bo]
 gi|154797640|gb|EDO06819.1| 26S protease regulatory subunit 6A, putative [Babesia bovis]
          Length = 418

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 198 PPKGVLMHGPPGTGKTLLARACAAQTKATFVKLAGPQLVQMFIGDGAKMVRDAFSLAKEK 257

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 +++ID +                  +  ++N +      D   ++ A   P + 
Sbjct: 258 SPTIIFIDEIDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRPDTL 317

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     +++  P++D    ++      R++ +   +    + R      
Sbjct: 318 DPAL--LRSGRLD--RKIELPHPNEDARAHIMQ--IHSRKMNVHPDVNFKELARSTEDFN 371

Query: 211 FAE 213
            A+
Sbjct: 372 GAQ 374


>gi|18129344|emb|CAC87658.1| DnaA protein [Wolbachia endosymbiont of Kalotermes flavicollis]
          Length = 129

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 40/99 (40%), Gaps = 1/99 (1%)

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P         + SRL    V  I+    +    ++        +++   +  ++ + ++ 
Sbjct: 1   PSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMSMYVPDDVLEFLARNIKS 60

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           ++   E  ++K+ + +L  G  +T   A+E L +  + +
Sbjct: 61  NIRELEGALNKVAHTSLI-GRSMTVESASETLADLLRSN 98


>gi|224476725|ref|YP_002634331.1| recombination factor protein RarA [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421332|emb|CAL28146.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 426

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 64/171 (37%), Gaps = 31/171 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   +  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAIAGSTQFKFRQLNAVTNTKKDMQMVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYAL 151

Query: 174 DDDFLEKVIVKMFA--DRQIF-----IDKKLAAYIVQRMERSLVFAEKLVD 217
           D++ +   + +  +  DR +      ID     Y   + +  +  A   ++
Sbjct: 152 DENDIRIALERALSEKDRGLADYNVNIDDDALQYFSTQSQGDVRAALNALE 202


>gi|58696886|ref|ZP_00372398.1| chromosomal replication initiator protein DnaA [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536901|gb|EAL60087.1| chromosomal replication initiator protein DnaA [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 220

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS 85
           P     + D+ +V    E A             ++      L G  G GK+ L +  +
Sbjct: 126 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIA 183


>gi|326940341|gb|AEA16237.1| primosomal protein DnaI [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 267

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  +L       
Sbjct: 103 AVKYVKTFKEWDGESLMLWGDPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRRTF 162

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 163 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 222

Query: 148 PVSWG 152
           P    
Sbjct: 223 PKELK 227


>gi|319943868|ref|ZP_08018149.1| replication-associated recombination protein A [Lautropia mirabilis
           ATCC 51599]
 gi|319743101|gb|EFV95507.1| replication-associated recombination protein A [Lautropia mirabilis
           ATCC 51599]
          Length = 490

 Score = 49.4 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 27/171 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL--LDFNDT 124
           +IL GP G GK+ LA + ++       +  A       I +     +E  +        T
Sbjct: 85  MILWGPPGVGKTTLARLTANAFGHEFIALSAVFSGVKDIRS----AMEQAERNLQAGRHT 140

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     L+ A T   S+ V    L SR   A V  +  
Sbjct: 141 ILFIDEIHRFNKAQQDALLPYAESGLITLIGATTENPSFEVNSA-LLSR---AQVYVLKS 196

Query: 173 PDDDFLEKVIVKMFADR--QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            DD+ L+ ++ +  A    ++  +      +V   +     A ++++ ++ 
Sbjct: 197 LDDEELKALVERARARALPELEFEPAAIDTLVGYAD---GDARRMLNLLEQ 244


>gi|241894974|ref|ZP_04782270.1| crossover junction endodeoxyribonuclease [Weissella
           paramesenteroides ATCC 33313]
 gi|241871692|gb|EER75443.1| crossover junction endodeoxyribonuclease [Weissella
           paramesenteroides ATCC 33313]
          Length = 429

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVVLLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      + LP + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIVLIGATTENPYLTI-LPAIRSR---TQIFEVKPLSE 152

Query: 176 DFLEKVIVKMFAD--RQI 191
             ++  I +  AD  R +
Sbjct: 153 ADMQMAIARALADKERGL 170


>gi|119356781|ref|YP_911425.1| recombination factor protein RarA [Chlorobium phaeobacteroides DSM
           266]
 gi|119354130|gb|ABL65001.1| Recombination protein MgsA [Chlorobium phaeobacteroides DSM 266]
          Length = 446

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 29/176 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-----------V 111
             +I  GP GSGK+ LA I +   +    + S I   +  +                  +
Sbjct: 62  PSMIFWGPPGSGKTTLAGICASSLQFGFEKLSAIDSGVKEVRKALENAEKARRRGVRTML 121

Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            +++I   +      L H I    +    +L+ A T   S+ V    L SR   A V  +
Sbjct: 122 FIDEIHRFNKAQQDTLLHAI----EEGLVVLVGATTENPSFEVNAA-LLSR---AQVYIL 173

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLA----AYIVQRMERSLVFAEKLVDKMDNL 222
           +   D  +E VI        +     +      ++V+    S   A K ++ ++  
Sbjct: 174 NPLGDREIEAVINHALTSDTVLSALSVVLEDPDFLVRF---SAGDARKALNALEAA 226


>gi|149173567|ref|ZP_01852197.1| hypothetical protein PM8797T_22523 [Planctomyces maris DSM 8797]
 gi|148847749|gb|EDL62082.1| hypothetical protein PM8797T_22523 [Planctomyces maris DSM 8797]
          Length = 505

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 62/160 (38%), Gaps = 28/160 (17%)

Query: 67  VILVGPSGSGKSC----LANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           ++  GP G+GK+     L+      +     + +   + + +    +     V+LED+DL
Sbjct: 292 ILFYGPPGTGKTHTIHYLSRTLPGHTTLLISAEQVGMLDEYMTLARLLQPSIVVLEDVDL 351

Query: 119 LDFN--------DTQLFH-IINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +  +        +  L + ++N +     + +   ++T    P +       L SR    
Sbjct: 352 IARDRNHMESPCEEVLLNKLLNEMDGLKPEAEILFILTTNR-PETLEAA---LASRPGRV 407

Query: 166 -TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
              ++  LPD +   K+I        + +  ++   +++R
Sbjct: 408 DQAIEFPLPDTEGRRKLI--HLYSEGVTVGAEVIDDVLRR 445


>gi|83312581|ref|YP_422845.1| recombination factor protein RarA [Magnetospirillum magneticum
           AMB-1]
 gi|82947422|dbj|BAE52286.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Magnetospirillum magneticum AMB-1]
          Length = 430

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 26/146 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDT 124
           VIL GP G GK+ +A + +++     F  ++     +    +   + +  +        T
Sbjct: 51  VILWGPPGCGKTTIARLLAERVG-LYFEPLSAVFSGVADLRK---VFDAAEKRKQTGRST 106

Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q          ++++   T              L SR     V+ +
Sbjct: 107 LLFVDEIHRFNRAQQDGFLPYVENGTVVLVGATTENPSFELNGA---LLSR---CQVLVL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKK 196
              DD  LE +++K  AD    +   
Sbjct: 161 HRLDDGALEDLLLKAEADLGRTLPLD 186


>gi|47076489|dbj|BAD18151.1| transposase B of IS643 [Bacillus halodurans]
          Length = 255

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GP G GK+ +A     ++    F     ++  ++                  I   
Sbjct: 105 LILLGPPGIGKTHIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 164

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             V+++D+  +  +  +    FH+IN +++  SS+++T+   P  WG  + D
Sbjct: 165 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 215


>gi|312139551|ref|YP_004006887.1| ATPase AAA [Rhodococcus equi 103S]
 gi|311888890|emb|CBH48203.1| putative AAA ATPase [Rhodococcus equi 103S]
          Length = 468

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 73/173 (42%), Gaps = 24/173 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVL--------L 113
           V+L GP G+GK+ LA++ S  +       +  S   K +  ++   R+ +L        +
Sbjct: 82  VLLYGPPGTGKTTLASLISGATGRKFEALSALSAGVKEVRGVIELARRRLLQGEQTVLFI 141

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +    LL+ A T   S+ V  P L SR   + V+++  
Sbjct: 142 DEVHRFSKTQQDALL----AAVENRIVLLVAATTENPSFSVVSP-LLSR---SLVLQLQS 193

Query: 173 PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223
              D +  VI +  AD R +    ++A   ++ + R +   A + +  ++  A
Sbjct: 194 LTSDDIRLVIERARADERGLGGSVEIADDALEHLVRLAAGDARRALTALEAAA 246


>gi|192360498|ref|YP_001983014.1| ATPase, AAA family domain-containing protein [Cellvibrio japonicus
           Ueda107]
 gi|190686663|gb|ACE84341.1| ATPase, AAA family domain protein [Cellvibrio japonicus Ueda107]
          Length = 447

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 78/200 (39%), Gaps = 28/200 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA ++++++ + RF  ++  +  +          E   +     T L
Sbjct: 52  MILWGPPGVGKTSLAKLFAEQANA-RFETLSAVMSGVKEIRAAVAAAEQERISTRRKTIL 110

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + + + A T   S+ +    L SR     V  +    
Sbjct: 111 FVDEVHRFNKSQQDAFLPYVEDGTFIFIGATTENPSFELNNA-LLSR---CRVYVLRGLQ 166

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSR 226
            + L +V+ +   D         + +D ++   + Q  +     A K ++ ++  A L++
Sbjct: 167 PEQLIQVMRQALTDAERGLGKSGLEVDDEVLNSLAQAAD---GDARKSLNLLEIAADLAQ 223

Query: 227 GMGITRSLAAEVLKETQQCD 246
                R +  +VL+E    D
Sbjct: 224 EQEGVRVINEDVLREVLAAD 243


>gi|254556440|ref|YP_003062857.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|254045367|gb|ACT62160.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
          Length = 420

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDIDL 118
           +IL GP G+GK+ LA I + +      +  A + +   +             +L+++I  
Sbjct: 44  LILWGPPGTGKTSLAQIIASQDDYPFVAFNASTENKAQLTKAIAQYPEQSFVLLIDEIHR 103

Query: 119 L--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           +     D  L ++ N        +++   T        +P + SR     + +     D 
Sbjct: 104 MTKTLQDFLLPYLEN------GHVMLIGSTTENPIMSIVPAIRSR---CQIFEFQPLSDT 154

Query: 177 FLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            +E  + +         D Q  +D K    I    E  L  A  +++ +   A+ +   I
Sbjct: 155 DIEIALRRAVTDIYNLTDDQ--VDAKALNLIAISAEGDLRIALNILETL--HAIDQKQ-I 209

Query: 231 TRSLAAEVLKETQ 243
           T +      ++  
Sbjct: 210 TVAAVQHFAQQQH 222


>gi|218883356|ref|YP_002427738.1| Cell division control protein 48, AAA family [Desulfurococcus
           kamchatkensis 1221n]
 gi|218764972|gb|ACL10371.1| Cell division control protein 48, AAA family [Desulfurococcus
           kamchatkensis 1221n]
          Length = 746

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G+GK+ LA   +++  +                     + K  +    +
Sbjct: 221 PPKGILLYGPPGTGKTLLAKALANEIGAYFVTINGPEIMSKFYGESEERLRKIFEEAQAN 280

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 281 APAVIFIDEIDSIAPKREEVTGEVEKRVVAQLLTLMDGLKERGKVIVIGATNRPDALD-- 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD     +++      R + + + +
Sbjct: 339 -PALRRPGRFDREIEIPPPDKRARREILAVH--TRNMPLAEDV 378



 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P + ++L GP G+GK+ LA   + +S +   
Sbjct: 497 PPKGILLFGPPGTGKTLLAKAVATESGANFI 527


>gi|126207922|ref|YP_001053147.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           L20]
 gi|126096714|gb|ABN73542.1| hypothetical protein APL_0438 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 446

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 35/203 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 52  MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 161

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  + +V+     D  R +     +I+  +   +   +     FA   ++ M ++A
Sbjct: 162 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 221

Query: 224 --LSRGMGITRSLAAEVLKETQQ 244
              S+G  + ++L AEVL E Q 
Sbjct: 222 EISSQGKRLNKALLAEVLGERQA 244


>gi|3661499|gb|AAC61729.1| OrfB [Escherichia coli]
          Length = 195

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 25/145 (17%)

Query: 32  FPRCLGISRDDLL-VHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKS 88
            P    +S  D   V        R +     W      V+L G SG GKS LA    D  
Sbjct: 10  LPVAKTLSEYDFSQVPELNGAQFRQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGV 69

Query: 89  RSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFNDTQ---LF 127
               +     S   +L + RK                   ++++D+  +  +  +   LF
Sbjct: 70  VGQGYRARFYSAGELLQELRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLF 129

Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152
            +I   ++   SL++T+      WG
Sbjct: 130 ELIAHRYERG-SLVITSNHPFSMWG 153


>gi|16273484|ref|NP_439735.1| recombination factor protein RarA [Haemophilus influenzae Rd KW20]
 gi|1175611|sp|P45262|RARA_HAEIN RecName: Full=Replication-associated recombination protein A
 gi|1574435|gb|AAC23238.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 446

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 41/206 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +I  GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MIFWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169
           +++   + +    F  HI     +  + + +  T              L SR   A V  
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA---LLSR---ARVYV 161

Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDK 218
           +       +E+V+ +   D  R      + +++ L   + + +       L   E +VD 
Sbjct: 162 LKSLTTAEIEQVLQQAVEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDM 221

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244
            D      G  I R+L  EVL E Q 
Sbjct: 222 ADET--ENGKKIDRTLLKEVLGERQA 245


>gi|78186607|ref|YP_374650.1| recombination factor protein RarA [Chlorobium luteolum DSM 273]
 gi|78166509|gb|ABB23607.1| Recombination protein MgsA [Chlorobium luteolum DSM 273]
          Length = 457

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 27/177 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-----------LIDTRKPV 111
             +I  GP GSGK+ LA I +     R  + S I   +  +               R  +
Sbjct: 62  PSMIFWGPPGSGKTTLAEICASALDFRFEQLSAIESGVKDVRRVLENAASSRARGIRTLL 121

Query: 112 LLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            +++I   + +    L H I    +    +L+ A T   S+ +    L SR++  T+  +
Sbjct: 122 FIDEIHRFNKSQQDTLLHAI----EQGVVVLIGATTENPSFEINAA-LLSRMQVYTLKSL 176

Query: 171 SLPDDDFL--EKVIVK-MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              D   +    + V  +F DR + ++     ++++    S   A K ++ ++   L
Sbjct: 177 GPEDIRLVVTRALSVDPLFRDRHVQVED--MEFLLRF---SGGDARKALNALEAAFL 228


>gi|91778173|ref|YP_553381.1| putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
 gi|91783140|ref|YP_558346.1| putative IS21 transposase-associated ATP- binding protein
           [Burkholderia xenovorans LB400]
 gi|91785696|ref|YP_560902.1| putative insertion sequence ATP-binding protein [Burkholderia
           xenovorans LB400]
 gi|91687094|gb|ABE30294.1| Putative IS21 transposase-associated ATP- binding protein
           [Burkholderia xenovorans LB400]
 gi|91689650|gb|ABE32850.1| putative insertion sequence ATP-binding protein [Burkholderia
           xenovorans LB400]
 gi|91690833|gb|ABE34031.1| Putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
          Length = 272

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 23/134 (17%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           V  A   A+   +SW       ++L GP G+GKS L +          +  +      ++
Sbjct: 87  VSKAHVTALATGESWLE-KGATILLFGPPGAGKSHLGSAIGHALIDAGYRVLFTRTSELV 145

Query: 105 ------------------IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143
                             +D    ++L+D+     +  +   LF +I +      SLL+T
Sbjct: 146 QKLQAARQSLQLPSALAKLDRFDLIILDDLSYARKDQAETSVLFELI-AERYERKSLLIT 204

Query: 144 ARTFPVSWGVCLPD 157
           A      W    PD
Sbjct: 205 ANQPFSGWNDVFPD 218


>gi|73662441|ref|YP_301222.1| recombination factor protein RarA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72494956|dbj|BAE18277.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 427

 Score = 49.4 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 76/197 (38%), Gaps = 33/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLIVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDK--MDNLAL 224
           D++ +   + +   D  R +      +D+   AY   + +  +  A   ++   + +  +
Sbjct: 152 DENDVRVSLDRALNDSERGLASYNPKVDEDAMAYFTTQSQGDVRSALNALELAVLSSENI 211

Query: 225 SRGMGITRSLAAEVLKE 241
            +   IT   A + L++
Sbjct: 212 DQQRHITLQDAKDCLQK 228


>gi|229061576|ref|ZP_04198920.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus
           AH603]
 gi|228717810|gb|EEL69460.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus
           AH603]
          Length = 218

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 54/130 (41%), Gaps = 24/130 (18%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-- 104
           +A + A + ++ +  W    +++ G  G+GK+ LA   +++     F  + +S+  +L  
Sbjct: 50  TAGQIAKKYVNEFKKWNGESLMIWGEPGNGKTHLAAAIANELSKQGFIVVFQSVPELLQR 109

Query: 105 -------------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLM 142
                              +     ++L+DI      ++ + +LF++I+  ++ +   L 
Sbjct: 110 IRSTFNSDNKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNVIDGRYRKELPTLY 169

Query: 143 TARTFPVSWG 152
           T+   P    
Sbjct: 170 TSNLRPKELQ 179


>gi|18129346|emb|CAC87659.1| DnaA protein [Wolbachia endosymbiont of Folsomia candida]
          Length = 135

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SRL    V  I+    +    ++        +++ K +  ++ + +
Sbjct: 1   RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKIEQMNMYVPKDVLEFLARNI 60

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + ++   E  ++K+ + +L  G  +T   A+E L +  + +
Sbjct: 61  KSNIRELEGALNKVAHTSLI-GRSMTVESASETLMDLLRSN 100


>gi|167039928|ref|YP_001662913.1| recombination factor protein RarA [Thermoanaerobacter sp. X514]
 gi|300915273|ref|ZP_07132587.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561]
 gi|307724748|ref|YP_003904499.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
           sp. X513]
 gi|166854168|gb|ABY92577.1| AAA ATPase, central domain protein [Thermoanaerobacter sp. X514]
 gi|300888549|gb|EFK83697.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561]
 gi|307581809|gb|ADN55208.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X513]
          Length = 443

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ LA I ++ + S    FS +   +  I     K     ++D +    T
Sbjct: 56  MILWGPPGVGKTTLAMIIANMTNSKFVTFSAVLSGIKEIKEIMAKA----ELDAMYGTRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ V    L SR   + V  +  
Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167

Query: 173 PDDDFLEKVIVKMFADRQ 190
             ++ L  ++ +   D Q
Sbjct: 168 LTEEDLLILLKRALKDEQ 185


>gi|323455979|gb|EGB11846.1| hypothetical protein AURANDRAFT_69630 [Aureococcus anophagefferens]
          Length = 801

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 232 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 291

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ + Q    +++ A   P S    
Sbjct: 292 SPAIIFIDEIDSIAPKRDKTNGEVERRIVSQLLTLMDGLKQRAHVVVIGATNRPNSMD-- 349

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD++   ++       R + +D  +
Sbjct: 350 -PALR-RFGRFDREIDIGVPDENGRLEIF--RIHTRNMKLDDDV 389


>gi|91784018|ref|YP_559224.1| putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
 gi|91687972|gb|ABE31172.1| Putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
          Length = 280

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 30/150 (20%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
            F F           +V  A   A+   +SW       V+L GP G GKS L +      
Sbjct: 78  AFDFGAVP-------MVSKAHVTALATGESWLE-KGATVLLFGPPGVGKSHLGSAIGHAL 129

Query: 89  RSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDTQ---LF 127
               +  +      ++                  +D    ++L+D+     +  +   LF
Sbjct: 130 IDVGYRVLFTRTSELVQKLQAARQSLQLPCALAKLDRFDLIILDDLSYARKDQAETSVLF 189

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +I +      SLL+TA      W    PD
Sbjct: 190 ELI-AERYERKSLLITANQPFSGWNDVFPD 218


>gi|326791959|ref|YP_004309780.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum
           DSM 5427]
 gi|326542723|gb|ADZ84582.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum
           DSM 5427]
          Length = 440

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 77/206 (37%), Gaps = 45/206 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-------- 118
           +I  GP G+GK+ +A + ++ +++      A +     I       +ED  L        
Sbjct: 55  LIFYGPPGTGKTTIAKVIANTTKAHFIVLNATTSGKAEIIK----AVEDAKLQRSMTGKK 110

Query: 119 --LDFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
             +  ++    H  N           +  + +L+ A T    + V    L SR   + V 
Sbjct: 111 TIIFIDEI---HRFNKAQQDALLPYTEDGTLVLIGATTENPYFEVNRA-LISR---SLVF 163

Query: 169 KISLPDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           ++   + D ++K+I +     +R +      + +    Y+     R+   A   ++ ++ 
Sbjct: 164 ELKPLETDDVKKIIKEAVYNKERGLGAYKADVTEDALDYLAM---RTAGDARNALNAIEL 220

Query: 222 LALSRGMG------ITRSLAAEVLKE 241
             ++          IT S+  E +++
Sbjct: 221 AVMTTSRSEDGIIHITISVLEECVQK 246


>gi|296111080|ref|YP_003621461.1| chromosome segregation helicase (putative) [Leuconostoc kimchii
           IMSNU 11154]
 gi|295832611|gb|ADG40492.1| chromosome segregation helicase (putative) [Leuconostoc kimchii
           IMSNU 11154]
          Length = 428

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 31/197 (15%)

Query: 67  VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   K      +    S   + I   +        +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSSKYAFRMLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L+    D  L H+     +  S +L+ A T      V  P + SR     + +++   +
Sbjct: 102 RLNKVKQDFLLPHL-----ESGSIILIGATTENPYINVT-PAIRSR---TQIFQVNPLTE 152

Query: 176 DFLEKVIVKMFADRQIFIDK---KLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGMG-- 229
             ++  IV+  AD++  + +    L    +  + R+        ++ ++   LS      
Sbjct: 153 ADIQAAIVRALADKKNGLGEYNVMLEDNAMSHLSRATNGDLRSALNGLELAVLSTKPAND 212

Query: 230 -----ITRSLAAEVLKE 241
                IT  +  E ++ 
Sbjct: 213 DNIIHITLPIIEETVQR 229


>gi|297544999|ref|YP_003677301.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842774|gb|ADH61290.1| AAA ATPase central domain protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 443

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ LA I ++ + S    FS +   +  I     K     ++D +    T
Sbjct: 56  MILWGPPGVGKTTLAMIIANMTNSKFVTFSAVLSGIKEIKEIMAKA----ELDAMHGTRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ V    L SR   + V  +  
Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167

Query: 173 PDDDFLEKVIVKMFADRQ 190
             ++ L  ++ +   D Q
Sbjct: 168 LTEEDLLILLKRALKDEQ 185


>gi|305681055|ref|ZP_07403862.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC
           14266]
 gi|305659260|gb|EFM48760.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC
           14266]
          Length = 451

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 30/176 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           VIL GP G+GK+ +A++ S  +                  + I ++   ++      + +
Sbjct: 67  VILYGPPGTGKTTIASLISQATARKFVGLSALNSGVKEVRAVIDQARRDLIQGMSTVLFI 126

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +    LL+ A T   S+ V  P L SR   + +VK+  
Sbjct: 127 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLIVKLES 178

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            DD  +  V+ +   D R +             +V     S   A + +  ++  A
Sbjct: 179 LDDASVRAVLRRALVDERGLGGRITASDAAIDQLVA---LSGGDARRSLTYLEAAA 231


>gi|150399923|ref|YP_001323690.1| AAA family ATPase [Methanococcus vannielii SB]
 gi|150012626|gb|ABR55078.1| AAA family ATPase, CDC48 subfamily [Methanococcus vannielii SB]
          Length = 781

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 85/220 (38%), Gaps = 50/220 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEEN 269

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +    ++           QL  +++ +      +++ A   P S  + 
Sbjct: 270 SPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLLDGLESRGQVVILAATNRPDSIDMA 329

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQRME 206
           L     RL       I +PD    ++++      R + +           +   ++  ++
Sbjct: 330 LRR-PGRLDRELT--IGIPDRTARKEILQ--IHTRNMPLQPDYEKNNVISVLNELIGELD 384

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           R+    E++V K++N A          L  ++LKE    D
Sbjct: 385 RN--KIEEVVKKVENSAKEE-------LIEKILKENDLED 415



 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++S +   S
Sbjct: 540 PPKGVLLFGPPGTGKTLLAKAVANESEANFIS 571


>gi|28378233|ref|NP_785125.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1]
 gi|28271068|emb|CAD63973.1| chromosome segregation helicase (putative) [Lactobacillus plantarum
           WCFS1]
          Length = 420

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDIDL 118
           +IL GP G+GK+ LA I + +      +  A + +   +             +L+++I  
Sbjct: 44  LILWGPPGTGKTSLAQIIASQDDYPFVAFNASTENKAQLTKAIAQYPEQSFVLLIDEIHR 103

Query: 119 L--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           +     D  L ++ N        +++   T        +P + SR     + +     D 
Sbjct: 104 MTKTLQDFLLPYLEN------GHVMLIGSTTENPIMSIVPAIRSR---CQIFEFQPLSDT 154

Query: 177 FLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            +E  + +         D Q  +D K    I    E  L  A  +++ +   A+ +   I
Sbjct: 155 DIEIALRRAVTDIYNLTDDQ--VDAKALNLIAISAEGDLRIALNILETL--HAIDQKQ-I 209

Query: 231 TRSLAAEVLKETQ 243
           T +      ++  
Sbjct: 210 TVAAVQHFAQQQH 222


>gi|320333638|ref|YP_004170349.1| AAA ATPase central domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319754927|gb|ADV66684.1| AAA ATPase central domain protein [Deinococcus maricopensis DSM
           21211]
          Length = 438

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 25/175 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA + +    +   +  A S  + + D R+ V   + +      T
Sbjct: 45  GSLILWGPPGVGKTTLARLLARAVDAHFIALSAVS--AGVKDIREAVGEAERERGRGRRT 102

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     L+ A T   S+ V  P L SR   A  + +  
Sbjct: 103 LLFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARTLVLEA 158

Query: 173 PDDDFLEKVIVKMFAD-RQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + +  ++ +  AD R +       +    + +  +     A + +  ++  +
Sbjct: 159 LTPEDIRGLLERALADERGLPGVTAQPEALDLLARLAD---GDARRALSTLEVAS 210


>gi|319644801|ref|ZP_07999034.1| YrvN protein [Bacillus sp. BT1B_CT2]
 gi|317392610|gb|EFV73404.1| YrvN protein [Bacillus sp. BT1B_CT2]
          Length = 421

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  +        +      ++        +  +  ++L+++ 
Sbjct: 41  MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEAIAAEAKMSGQVILILDEVH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD             +  +  ++M   T    +    P + SR     + ++   D + 
Sbjct: 101 RLDKGKQDFL----LPYLENGMIIMIGATTANPYHAINPAIRSR---TQIFELHPLDPEQ 153

Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-- 228
           ++  I +   D  R +      +D +   ++ +            ++ ++   LS     
Sbjct: 154 IKTAIKRALEDKHRGLGSYDVAVDDEALDHLARGCG---GDVRSALNALELAVLSTKENS 210

Query: 229 ----GITRSLAAEVLKE 241
                IT  +A E L++
Sbjct: 211 EGAIRITLEIAEECLQK 227


>gi|108802897|ref|YP_642834.1| hypothetical protein Rxyl_0041 [Rubrobacter xylanophilus DSM 9941]
 gi|108764140|gb|ABG03022.1| IstB-like ATP-binding protein [Rubrobacter xylanophilus DSM 9941]
          Length = 241

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 32/163 (19%)

Query: 44  LVHSAIEQAVRLIDS-WPSWPSRV-----VILVGPSGSGKSCLA-NIWSDKSRSTRFSNI 96
            V  A  +A+  +++    W         +   G  G+GK+ LA  + ++  +  R  ++
Sbjct: 68  YVSPAAAKALEKVEAYLKGWEENREQGRGLYFCGGVGTGKTHLAVAVMNELIQRRRVPSL 127

Query: 97  AKSLDSILIDTRKP--------------------VLLEDIDLLDFND---TQLFHIINSI 133
             ++  +L + R                      +LL+D+     N+    +LF IIN  
Sbjct: 128 FVTVPELLDNLRGAYNDPGRDLDEWMDAVKNAELLLLDDLGAEKANEWVRERLFVIINHR 187

Query: 134 HQYDSSLLMTARTFPVSWGVCL-PDLCSRLKA-ATVVKISLPD 174
           ++     + T+   P      L     SR+ A    V++  PD
Sbjct: 188 YREALPTIFTSNIGPEELPRQLGERTASRIIAMCEGVELEGPD 230


>gi|47076483|dbj|BAD18147.1| transposase B of IS643 [Bacillus halodurans]
          Length = 254

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GP G GK+ +A     ++    F     ++  ++                  I   
Sbjct: 104 LILLGPPGIGKTHIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 163

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             V+++D+  +  +  +    FH+IN +++  SS+++T+   P  WG  + D
Sbjct: 164 DLVIIDDLMYMAMDQREADLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 214


>gi|260435731|ref|ZP_05789701.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. WH 8109]
 gi|260413605|gb|EEX06901.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. WH 8109]
          Length = 722

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I ++ +R+   S  A       +        + ++      T L
Sbjct: 58  LILHGPPGVGKTTLARIIANHTRAHFSSLNAVLAGIKDLRIEVDAARQRLERHGLR-TIL 116

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  + +L+ A T    + V    L SR   + + ++   +
Sbjct: 117 FIDEVHRFNSAQQDALLPWVENGTVILIGATTENPYFEVNKA-LVSR---SRLFRLLPLE 172

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            + L++++ +  AD       R I I    A ++V             ++
Sbjct: 173 PEDLQRLLQRALADDERGYGYRSIDISSDAANHLVDVAGGDARSLLNALE 222


>gi|16519790|ref|NP_443910.1| transposase [Sinorhizobium fredii NGR234]
 gi|16519867|ref|NP_443987.1| transposase [Sinorhizobium fredii NGR234]
 gi|16519937|ref|NP_444057.1| transposase [Sinorhizobium fredii NGR234]
 gi|227818790|ref|YP_002822761.1| transposase [Sinorhizobium fredii NGR234]
 gi|227819036|ref|YP_002823007.1| transposase [Sinorhizobium fredii NGR234]
 gi|2497397|sp|P55500|Y4IQ_RHISN RecName: Full=Putative insertion sequence ATP-binding protein
           y4iQ/y4nD/y4sD
 gi|2182455|gb|AAB91712.1| putative transposase number 2 of insertion sequence NGRIS-5b
           [Sinorhizobium fredii NGR234]
 gi|2182539|gb|AAB91784.1| putative transposase number 2 for insertion sequence NGRIS-5a
           [Sinorhizobium fredii NGR234]
 gi|2182618|gb|AAB91844.1| putative transposase number 2 of insertion sequence NGRIS-5c
           [Sinorhizobium fredii NGR234]
 gi|36959047|gb|AAQ87472.1| Transposase [Sinorhizobium fredii NGR234]
 gi|227337789|gb|ACP22008.1| putative transposase number 2 for insertion sequence NGRIS-5d
           [Sinorhizobium fredii NGR234]
 gi|227338035|gb|ACP22254.1| putative transposase number 2 for insertion sequence NGRIS-5e
           [Sinorhizobium fredii NGR234]
          Length = 298

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------WS-------DKS 88
           V  A   A+   DSW +     ++L GP G GKS LA           W        D  
Sbjct: 89  VSKAQVMAIAAGDSWLA-KGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV 147

Query: 89  RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143
           +  + +     L+S +  +D    ++L+D+  +  +  +   LF +I S      S+++T
Sbjct: 148 QKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELI-SARYERRSIMIT 206

Query: 144 ARTFPVSWGVCLPD 157
           A      W    PD
Sbjct: 207 ANQPFGEWNRVFPD 220


>gi|307545643|ref|YP_003898122.1| recombination factor protein RarA [Halomonas elongata DSM 2581]
 gi|307217667|emb|CBV42937.1| recombination factor protein RarA [Halomonas elongata DSM 2581]
          Length = 446

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 29/156 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           R +IL GP G+GK+ LA I +++S +   R S +   +  I     +  + +  D     
Sbjct: 50  RSMILWGPPGTGKTTLAEILAEESGAHLERLSAVMAGVKDIREAVDRARVAQGQDRGTL- 108

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
              LF    H +N           +     L+ A T   S+ V    L SR   A V  +
Sbjct: 109 ---LFLDEIHRLNKSQQDALLPHVESGLLTLIGATTENPSFEVNSA-LLSR---ARVHVL 161

Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199
               DD + +V+ +  AD       R+I +D ++  
Sbjct: 162 KALTDDDVVEVLRRALADETRGLGARRIAVDDEVLN 197


>gi|300088340|ref|YP_003758862.1| ATPase central domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528073|gb|ADJ26541.1| AAA ATPase central domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 449

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 67/199 (33%), Gaps = 34/199 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST--------RFSNIAKSLDSILIDTRKP----VL 112
           R +IL G  G+GK+ +      ++              +    + ++     +     V 
Sbjct: 221 RGLILSGHPGTGKTLICKAIMKQTAGKYTCITTDPGLMDEPNYIRAVYALAGELAPSFVF 280

Query: 113 LEDIDLLDFNDTQLFHIIN------------SIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           +ED+D +      LF   N                 D  + +       S    L    S
Sbjct: 281 IEDLDQI-GQSRSLFPFHNGSPLNTLLEVMDGAEACDGIITIATTNSLDSLDSALIRRPS 339

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL--VFAEKLVDK 218
           R     ++++  PD+D    +I  +   R+I +D  + AYI  R  R       ++++  
Sbjct: 340 RFD--RIIELPHPDEDKRRSIIDTL--SRRIRLDADIKAYI-TRSTRHFTPAQLQEVIYT 394

Query: 219 M--DNLALSRGMGITRSLA 235
           +  D     R    T  LA
Sbjct: 395 LAIDRAGRERRFRTTAPLA 413


>gi|18129337|emb|CAC83492.1| DnaA protein [Wolbachia endosymbiont of Litomosoides sigmodontis]
          Length = 154

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SRL    V  I+    +    ++        I++ + +  ++ + +
Sbjct: 1   RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNIYVSQDVLEFLAKNI 60

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 61  KSNIRELEGALNKVAHTSLI-GRSVTVESASETL 93


>gi|193216431|ref|YP_001999673.1| chromosomal replication initiation protein [Mycoplasma arthritidis
           158L3-1]
 gi|193001754|gb|ACF06969.1| chromosomal replication initiator protein DnaA [Mycoplasma
           arthritidis 158L3-1]
          Length = 454

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 69/203 (33%), Gaps = 28/203 (13%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
               A++ A  + ++        + +   SG GK+ L N   ++      +    + D +
Sbjct: 127 FNSVALKAARSIYENDQV-VFSPLFIYSSSGLGKTHLLNAIGNELMKKNKTCYYVNPDML 185

Query: 104 ---------------------LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSS 139
                                 + +   ++ +D+      ++    LF+IIN++      
Sbjct: 186 TRKLVEQLKNKNQEEINKIVDNLVSYDCLMFDDVQQYGNRESTLTVLFNIINTLMNDKKQ 245

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI---DKK 196
           +++ A   P   G       +R      V+I  P+   +  ++        I     +++
Sbjct: 246 IIIAADKRPEDLGGFEQRFITRFNGGLTVEIMQPEMSDVISILNFKLKQNNINPELWEEE 305

Query: 197 LAAYIVQRMERSLVFAEKLVDKM 219
              +I +    S+   E  ++++
Sbjct: 306 SMKFIARNFSNSIRSLEGAINRI 328


>gi|52081232|ref|YP_080023.1| recombination factor protein RarA [Bacillus licheniformis ATCC
           14580]
 gi|52786612|ref|YP_092441.1| recombination factor protein RarA [Bacillus licheniformis ATCC
           14580]
 gi|52004443|gb|AAU24385.1| Replication factor C conserved domain [Bacillus licheniformis ATCC
           14580]
 gi|52349114|gb|AAU41748.1| YrvN [Bacillus licheniformis ATCC 14580]
          Length = 421

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  +        +      ++        +  +  ++L+++ 
Sbjct: 41  MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEAIAAEAKMSGQVILILDEVH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD             +  +  ++M   T    +    P + SR     + ++   D + 
Sbjct: 101 RLDKGKQDFL----LPYLENGMIIMIGATTANPYHAINPAIRSR---TQIFELHPLDPEQ 153

Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-- 228
           ++  I +   D  R +      +D +   ++ +            ++ ++   LS     
Sbjct: 154 IKTAIKRALEDKHRGLGSYDVAVDDEALDHLARGCG---GDVRSALNALELAVLSTKENS 210

Query: 229 ----GITRSLAAEVLKE 241
                IT  +A E L++
Sbjct: 211 EGAIRITLEIAEECLQK 227


>gi|71282024|ref|YP_269469.1| recombination factor protein RarA [Colwellia psychrerythraea 34H]
 gi|71147764|gb|AAZ28237.1| ATPase, AAA family [Colwellia psychrerythraea 34H]
          Length = 511

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 31/177 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP GSGK+ LA I +  + +   R S +   +  I     K  L    +  +   T
Sbjct: 96  LIFWGPPGSGKTTLAEIIAQHANAEIERVSAVTSGIKEIRSAIEKAKLRAQGEGANKRRT 155

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 156 VLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPAFELNQA---LLSR---ARLYTL 209

Query: 171 SLPDDDFLEKVIVKMF----ADRQIFIDKKL--AAYIVQRMERSLVFAEKLVDKMDN 221
                D L +V+ +      A++Q+ I   +     ++ R +     A +L++ ++N
Sbjct: 210 KKLTRDDLAQVLQRAISLCEAEQQLSIKLSVDAKQSLLNRSD---GDARRLLNLLEN 263


>gi|71032351|ref|XP_765817.1| 26S proteasome subunit [Theileria parva strain Muguga]
 gi|68352774|gb|EAN33534.1| 26S proteasome subunit, putative [Theileria parva]
          Length = 419

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 74/202 (36%), Gaps = 40/202 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + +++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 199 PPKGILMHGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 258

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 +++ID +                  +  ++N +      D   ++ A   P + 
Sbjct: 259 APTIIFIDEIDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDKVKVIAATNRPYTL 318

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSL 209
              L  L S RL     +++  P+++    ++      R++ + K    Y+ + R   + 
Sbjct: 319 DPAL--LRSGRLD--RKIELPHPNEEARAHILQ--IHSRKMNVHKDT-NYMELSRSTENF 371

Query: 210 VFAEKLVDKMDNLALSRGMGIT 231
             A+     ++   ++   G T
Sbjct: 372 NGAQLKAVCIEAGMVALRRGAT 393


>gi|325578148|ref|ZP_08148283.1| replication-associated recombination protein A [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159884|gb|EGC72013.1| replication-associated recombination protein A [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 446

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 43/207 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +   R S +   +  I           L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAHRINAEVERISAVTSGVKEIRESIERAKQNRLADRQTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAAT 166
           +++   + +    F  HI     +  + + + A T   S+ +    L SR     LK+ T
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSRARVYLLKSLT 166

Query: 167 VVKISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           V +I         +V+ +  +D  R      + +++ L   + + +      A   ++ M
Sbjct: 167 VAEIE--------QVLQQAISDPERGLGKERLVLEENLLQVLAEYVNGDARLALNCLELM 218

Query: 220 DNLAL--SRGMGITRSLAAEVLKETQQ 244
            ++A     G  +  +L  EVL E Q 
Sbjct: 219 VDMAPETENGKKLDLTLLKEVLGERQA 245


>gi|14521559|ref|NP_127035.1| cell division control protein [Pyrococcus abyssi GE5]
 gi|5458778|emb|CAB50265.1| ATPase of the AAA+ family [Pyrococcus abyssi GE5]
          Length = 840

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  I  +  + 
Sbjct: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALD-- 362

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    +++ +PD    ++++      R + I+  
Sbjct: 363 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPIEPD 401



 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 56/203 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + V+L GP G+GK+ LA   + +S++   +               K +  I    R+ 
Sbjct: 580 PPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 639

Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID +                  QL   ++ + +    +++ A   P     
Sbjct: 640 SPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDP 699

Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-- 206
            L  L      RL     + +  PD+    ++       R + +   +    + +R E  
Sbjct: 700 AL--LRPGRFDRL-----ILVPAPDEKARFEIFKVH--TRGMPLADDVDLKELARRTEGY 750

Query: 207 ---------RS--LVFAEKLVDK 218
                    R   +    + V K
Sbjct: 751 TGADIAAVCREAAMNALRRAVAK 773


>gi|332158940|ref|YP_004424219.1| cell division control protein [Pyrococcus sp. NA2]
 gi|331034403|gb|AEC52215.1| cell division control protein [Pyrococcus sp. NA2]
          Length = 840

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 76/196 (38%), Gaps = 41/196 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  I  +  + 
Sbjct: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALD-- 362

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK-----LAAYI--VQRMER 207
            P L    +    +++ +PD    ++++      R + I+       +   +  +++ ER
Sbjct: 363 -PALRRPGRFDREIEVGVPDKKGRKEILQ--IHTRGMPIEPDFEKEAVIKALKELEKDER 419

Query: 208 -SLVFAEKLVDKMDNL 222
            +     +L+++++  
Sbjct: 420 FNKEKIRELIERVNKA 435



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 45/215 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + ++L GP G+GK+ LA   + +S++   +               K +  I    R+ 
Sbjct: 580 PPKGILLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 639

Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID +                  QL   ++ + +    +++ A   P     
Sbjct: 640 APAIIFIDEIDAIAPARGTTEGERVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDP 699

Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERS 208
            L  L      RL     + +  PD+    ++       R + + + +    + +R E  
Sbjct: 700 AL--LRPGRFDRL-----ILVPAPDERARFEIFKVH--TRNMPLGEDVDLRELARRTEGY 750

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                  V +    A++    + + L AE L+   
Sbjct: 751 TGADIAAVCR--EAAMNALRRVVKRLPAEELENED 783


>gi|313201003|ref|YP_004039661.1| aaa atpase central domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440319|gb|ADQ84425.1| AAA ATPase central domain protein [Methylovorus sp. MP688]
          Length = 440

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 70/186 (37%), Gaps = 23/186 (12%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSIL 104
           ++ S     +IL GP G GK+ LA + ++ + +                  + ++  ++ 
Sbjct: 42  AFQSGKLPSMILWGPPGVGKTTLARLIANTADAEFIPLSAVLSGIKDIREAVERAQHTLQ 101

Query: 105 IDTRKPVL-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
              R+ +L ++++   +      F       +      + A T   S+ V    L SR  
Sbjct: 102 QSGRRTILFVDEVHRFNKGQQDAFLPF---VESGLITFIGATTENPSFEVNSA-LLSR-- 155

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V  +    +  L +++ +  A+    + +  ++   ++   +         V+ + N
Sbjct: 156 -ARVFVLQALSEADLAELLERARANMAPDMALSDEVKEQVLAYADGDARRLLNFVEGLFN 214

Query: 222 LALSRG 227
            AL+ G
Sbjct: 215 AALTSG 220


>gi|167037129|ref|YP_001664707.1| recombination factor protein RarA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115548|ref|YP_004185707.1| AAA ATPase central domain-containing protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166855963|gb|ABY94371.1| AAA ATPase, central domain protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928639|gb|ADV79324.1| AAA ATPase central domain protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 443

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ LA I ++ + S    FS +   +  I     K     ++D +    T
Sbjct: 56  MILWGPPGVGKTTLAMIIANMTNSKFITFSAVLSGIKEIKEIMAKA----ELDAMYGTRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ V    L SR   + V  +  
Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167

Query: 173 PDDDFLEKVIVKMFADRQ 190
             ++ L  ++ +   D Q
Sbjct: 168 LTEEDLLILLKRALKDEQ 185


>gi|297837215|ref|XP_002886489.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332330|gb|EFH62748.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1047

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 30/129 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------NIAKSLDSILIDTRKPVL 112
           P + ++L GP+G+GK+ LA   + ++ +   +                   L     P +
Sbjct: 794 PCKGILLFGPAGTGKTMLAKALATEAGANLINISMSRWFSEGEKYVKAVFSLASKISPSI 853

Query: 113 L--EDIDLLDFNDTQLFH--IIN----SIHQYDSSLLMTA------------RTFPVSWG 152
           +  + +D + F D +  +  IIN      ++ +  L++ +            R  P    
Sbjct: 854 IFMDKVDSMLFQDQKTANEFIINWDGLRTNEKEHVLVLASTNRPFDLDEAVIRRLPHRLM 913

Query: 153 VCLPDLCSR 161
           V LPD  SR
Sbjct: 914 VGLPDALSR 922


>gi|239906458|ref|YP_002953199.1| putative ATPase [Desulfovibrio magneticus RS-1]
 gi|239796324|dbj|BAH75313.1| putative ATPase [Desulfovibrio magneticus RS-1]
          Length = 408

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 13/169 (7%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI--LIDTRKPVLLEDIDLLD 120
             ++L GP G GKS LA I +        R S     L ++  LI  ++ ++L+++    
Sbjct: 43  PSLLLFGPPGCGKSTLALILARAKGRPYVRVSAPEAGLAALRELIKGKEILILDELHRFS 102

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                 F  I    +    +L+   T   S+ V    L SRL    V+++       L  
Sbjct: 103 KAQQDFFLPI---LETGEIVLLATTTENPSFSVTRQ-LLSRL---HVLRLGPLTHPQLMV 155

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           +  +   +  + + K+    I             LV+     ALS    
Sbjct: 156 LAERGAREAGMALAKESLETIAMLSSGDGRTLLNLVEY--TAALSEDKR 202


>gi|71033633|ref|XP_766458.1| cell division cycle protein 48 [Theileria parva strain Muguga]
 gi|68353415|gb|EAN34175.1| cell division cycle protein 48, putative [Theileria parva]
          Length = 811

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 62/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                SN+ ++      +
Sbjct: 252 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFAEAEKN 311

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A          
Sbjct: 312 APSIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIAAT---NRQNSI 368

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD    +++      R + +D ++
Sbjct: 369 DPALR-RFGRFDKEIDIGVPDDQGRLEIL--KIHTRNMKLDPQV 409



 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D  
Sbjct: 525 PSRGVLFYGPPGCGKTLLAKAVASECSANFISVKGPELLTMWFGESEANVREVFDKA 581


>gi|124485944|ref|YP_001030560.1| beta-lactamase domain-containing protein [Methanocorpusculum
           labreanum Z]
 gi|124363485|gb|ABN07293.1| AAA family ATPase, CDC48 subfamily [Methanocorpusculum labreanum Z]
          Length = 810

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 62/166 (37%), Gaps = 39/166 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ +A   ++++ +              + +  + L  I     + 
Sbjct: 236 PPKGVLLYGPPGTGKTLIARAVANEAGAYFDTISGPEIISKYYGDSEEKLREIFEKAEEN 295

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 296 APSIIFIDEIDSIAPKREESKGEVERRVVAQLLSLMDGLKSRGKVIVIAATNLPDSID-- 353

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +       ++I +PD D   +++      R + + + +
Sbjct: 354 -PALR---RGGRFDREIEIGVPDKDGRREILQIHA--RNVPLSENV 393


>gi|66361858|ref|XP_627893.1| CDC48 like AAA ATPase ortholog [Cryptosporidium parvum Iowa II]
 gi|46227655|gb|EAK88590.1| CDC48 like AAA ATPase ortholog [Cryptosporidium parvum Iowa II]
          Length = 820

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                 N+ ++ +    +
Sbjct: 257 PPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKN 316

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 317 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIAATNRPNSID-- 374

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD+   ++I      R + + K +
Sbjct: 375 -PALR-RFGRFDREIDIGVPDDNGRLEII--RIHTRNMKLAKDV 414



 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D  
Sbjct: 530 PSRGVLFYGPPGCGKTLLAKAVASECSANFISVKGPELLTLWFGESEANVREVFDKA 586


>gi|27468227|ref|NP_764864.1| recombination factor protein RarA [Staphylococcus epidermidis ATCC
           12228]
 gi|293366416|ref|ZP_06613094.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315773|gb|AAO04908.1|AE016748_142 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|291319450|gb|EFE59818.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 426

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 46  MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLIVEEAKMSGQVILLLDEIH 105

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 106 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 154

Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           D D +   + +   D  R +      +D+    Y   +   S       ++ ++   LS 
Sbjct: 155 DQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 211

Query: 227 G------MGITRSLAAEVLKE 241
                    IT   A + L++
Sbjct: 212 HIGEENERHITLDDAKDCLQK 232


>gi|67613096|ref|XP_667275.1| cell division cycle protein 48 [Cryptosporidium hominis TU502]
 gi|54658389|gb|EAL37040.1| cell division cycle protein 48 [Cryptosporidium hominis]
          Length = 814

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                 N+ ++ +    +
Sbjct: 251 PPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKN 310

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 311 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIAATNRPNSID-- 368

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD+   ++I      R + + K +
Sbjct: 369 -PALR-RFGRFDREIDIGVPDDNGRLEII--RIHTRNMKLAKDV 408



 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D  
Sbjct: 524 PSRGVLFYGPPGCGKTLLAKAVASECSANFISVKGPELLTLWFGESEANVREVFDKA 580


>gi|307247443|ref|ZP_07529489.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856059|gb|EFM88216.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 428

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 34  MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 89

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 90  LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 143

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  + +V+     D  R +     +I+  +   +   +     FA   ++ M ++A
Sbjct: 144 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 203

Query: 224 LS--RGMGITRSLAAEVLKETQQ 244
               +G  + ++L AEVL E Q 
Sbjct: 204 EISPQGKRLNKALLAEVLGERQA 226


>gi|210634752|ref|ZP_03298280.1| hypothetical protein COLSTE_02207 [Collinsella stercoris DSM 13279]
 gi|210158692|gb|EEA89663.1| hypothetical protein COLSTE_02207 [Collinsella stercoris DSM 13279]
          Length = 625

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 57/184 (30%), Gaps = 31/184 (16%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLA---NIWSD 86
               + +  +       A      + ++         + + G SG GK+ L      +  
Sbjct: 260 NAKYTFESFVAGDENRHAFNSAMRFAAFAEEPGQCPSLFIYGNSGLGKTHLLFAVRNYLA 319

Query: 87  KSRSTR---FSNIAKSLDSILID----------------TRKPVLLEDIDLLDFNDTQL- 126
           K +      ++N    LD  + +                    ++++D+  +      + 
Sbjct: 320 KEKPYIRVKYANSQAYLDDYMNELGTQRGPGSLIMREYRDADILIIDDVQNIVGKQASVE 379

Query: 127 --FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
             F +++S  +    +   +   P    +    L SR     +  +S P  +    ++ +
Sbjct: 380 FFFQLVDSFIREGKKIAFASDRAPKDLAMD-ERLTSRFSRGMLCLVSEPGFEMKYVILKR 438

Query: 185 MFAD 188
            + +
Sbjct: 439 YYEN 442


>gi|258405684|ref|YP_003198426.1| recombination factor protein RarA [Desulfohalobium retbaense DSM
           5692]
 gi|257797911|gb|ACV68848.1| AAA ATPase central domain protein [Desulfohalobium retbaense DSM
           5692]
          Length = 404

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 67/195 (34%), Gaps = 13/195 (6%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98
           S DD +  + + Q ++ + +        ++  GP G GKS LA +++           A 
Sbjct: 16  SLDDFIGQTHLRQRLQALQNASR--LSSLLFFGPPGCGKSTLALMFAKAHGGAYLRVSAP 73

Query: 99  SLDSILIDTR----KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            +    +  +      ++L+++          F     + +    +L+   T   S+ + 
Sbjct: 74  EVGLANLRKQIQNTDILILDELHRFSKAQQDFFLP---LLETGDIILLATTTENPSFSIT 130

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
              L SRL    V+++       L  +  +   +  + +  K    +             
Sbjct: 131 RQ-LLSRL---HVLRLRPLGPQELLDLAQRGQQELGLHLPDKSLELLCTYAGGDGRTLLN 186

Query: 215 LVDKMDNLALSRGMG 229
           L++  + L+  +   
Sbjct: 187 LLEYAEELSEEQRDP 201


>gi|262274499|ref|ZP_06052310.1| ATPase AAA family [Grimontia hollisae CIP 101886]
 gi|262221062|gb|EEY72376.1| ATPase AAA family [Grimontia hollisae CIP 101886]
          Length = 444

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 77/200 (38%), Gaps = 40/200 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113
           +IL GP G+GK+ LA + +  + +   R S +   +  I +   K            + +
Sbjct: 52  MILWGPPGTGKTTLAEVAAGYANAEIERVSAVTSGVKDIRLAIDKAKENQMVGRRTVLFV 111

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  +   + A T   S+ +    L SR   A V K+ 
Sbjct: 112 DEVHRFNKSQQDAFLPHI-----EDGTITFIGATTENPSFELNNA-LLSR---ARVYKLK 162

Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIV------QRMERSLVFAEKLVDK 218
             D + +  VI +  +DR        +  D+ +   +        RM  + +     + +
Sbjct: 163 SLDREDILDVIEQALSDRERGLGNENLVFDEGVKDQLASFTSGDARMTLNYLELLSDMAE 222

Query: 219 MDNLALSRGMGITRSLAAEV 238
            D+        IT +L AEV
Sbjct: 223 PDS---DGKKLITLALLAEV 239


>gi|256752628|ref|ZP_05493481.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748512|gb|EEU61563.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 443

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ LA I ++ + S    FS +   +  I     K     ++D +    T
Sbjct: 56  MILWGPPGVGKTTLAMIIANMTNSKFVTFSAVLSGIKEIKEIMAKA----ELDAMYGTRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ V    L SR   + V  +  
Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167

Query: 173 PDDDFLEKVIVKMFAD--RQIFI 193
             ++ L  ++ +   D  R + +
Sbjct: 168 LTEEDLLVLLKRALRDKERGLGM 190


>gi|124028210|ref|YP_001013530.1| ATP-dependent protease [Hyperthermus butylicus DSM 5456]
 gi|123978904|gb|ABM81185.1| ATP-dependent protease [Hyperthermus butylicus DSM 5456]
          Length = 736

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 74/224 (33%), Gaps = 70/224 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + ++L GP G GK+ LA   ++++ +   +               + L  I  + +K 
Sbjct: 218 PPKGILLYGPPGVGKTLLAKAIANETNAYFIAINGPEIMSKYYGESEQRLREIFEEAKKH 277

Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 278 APAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLALMDGLESRGDVIVIAATNRPNALDPA 337

Query: 152 -----------GVCLPDLCSRL-------KAATVVK---ISLPDD-------DFLEKVIV 183
                       + LPD   RL       +   + +   +    +         L  ++ 
Sbjct: 338 LRRPGRFDREIEIPLPDKQGRLEILQIHTRNMPLAEDVDLERLAELTRGFTGADLAALVR 397

Query: 184 K---MFADR--------QIFIDKKLAAYIVQRMERSLVFAEKLV 216
           +       R        Q  I  ++   +  RME  +    ++V
Sbjct: 398 EAAMHALRRYLPKIDLNQDRIPPEVLEEMEIRMEDFMAALREIV 441



 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 491 PPKGILLFGPPGTGKTLLAKAAATESGANFIA 522


>gi|125973135|ref|YP_001037045.1| recombination factor protein RarA [Clostridium thermocellum ATCC
           27405]
 gi|256003930|ref|ZP_05428916.1| AAA ATPase central domain protein [Clostridium thermocellum DSM
           2360]
 gi|281417327|ref|ZP_06248347.1| AAA ATPase central domain protein [Clostridium thermocellum JW20]
 gi|125713360|gb|ABN51852.1| Recombination protein MgsA [Clostridium thermocellum ATCC 27405]
 gi|255992058|gb|EEU02154.1| AAA ATPase central domain protein [Clostridium thermocellum DSM
           2360]
 gi|281408729|gb|EFB38987.1| AAA ATPase central domain protein [Clostridium thermocellum JW20]
 gi|316940639|gb|ADU74673.1| AAA ATPase central domain protein [Clostridium thermocellum DSM
           1313]
          Length = 432

 Score = 49.0 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 37/184 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G+GK+ LA I ++ +++        +     +  I+ DT+ P+L         
Sbjct: 45  IILYGPPGTGKTSLARIIANSTKANFEKLNAVTAGVADIKRIVSDTQNPIL------NPK 98

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + +L+ A T    + V    L SR   ++V  
Sbjct: 99  GRTVLFIDEIHRFNKSQQDALLPYVEDGTIILVGATTENPFFEVNKA-LISR---SSVFM 154

Query: 170 ISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +     D ++K+I     D  R +      I++    ++    +     A   ++ ++  
Sbjct: 155 LKPLGSDAIKKIIRNALTDKERGLGNMDIEIEEDALNFLADICD---GDARIALNALELA 211

Query: 223 ALSR 226
            L+ 
Sbjct: 212 VLTS 215


>gi|45357739|ref|NP_987296.1| cell division protein CDC48 [Methanococcus maripaludis S2]
 gi|45047299|emb|CAF29732.1| CDC48 cell division cycle protein family member [Methanococcus
           maripaludis S2]
          Length = 788

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 74/193 (38%), Gaps = 42/193 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEEN 269

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +    ++           QL  +++ +      +++ A   P S  + 
Sbjct: 270 SPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMA 329

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQRME 206
           L     RL     + I +PD     +++      R + +           +   +V   +
Sbjct: 330 LRR-PGRLD--REITIGIPDRHGRNEILQ--IHTRNMPLQPDYEKSDVISILNELVGEYD 384

Query: 207 RS-LVFAEKLVDK 218
           RS +    KLV+K
Sbjct: 385 RSKIESLVKLVEK 397



 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++S +   S
Sbjct: 540 PPKGVLLFGPPGTGKTLLAKAVANESEANFIS 571


>gi|329724701|gb|EGG61207.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU144]
          Length = 423

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           D D +   + +   D  R +      +D+    Y   +   S       ++ ++   LS 
Sbjct: 152 DQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    IT   A + L++
Sbjct: 209 HIGEENERHITLDDAKDCLQK 229


>gi|154248851|ref|YP_001409676.1| Holliday junction DNA helicase RuvB [Fervidobacterium nodosum
           Rt17-B1]
 gi|171769318|sp|A7HJD6|RUVB_FERNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|154152787|gb|ABS60019.1| Holliday junction DNA helicase RuvB [Fervidobacterium nodosum
           Rt17-B1]
          Length = 347

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 75/198 (37%), Gaps = 27/198 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +++  +         L+           LE  D+L  ++   
Sbjct: 60  ILLAGPPGLGKTTLATIIANELNANIHVTSGPILEKQGDLAAILTNLEAGDVLFIDEI-- 117

Query: 127 FHIINSIHQY---------DSSLLMTARTFPVSWGVCLPD------------LCS--RLK 163
            H +N   +             +++       S  V L              L S  R +
Sbjct: 118 -HRMNRNVEEILYSAMEDFQVDIMIGKGPAARSIRVELQPFTLIGATTRSGLLTSPLRNR 176

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + +++    + L+ +I +        ID   A  I +R   +   A +L+ ++ +L+
Sbjct: 177 FGMIFEMNFYTQEELKMIITRAAEVMGTLIDDDAALSIAKRSRGTPRIAIRLLKRVRDLS 236

Query: 224 LSRGMG-ITRSLAAEVLK 240
             RG   IT ++  EV++
Sbjct: 237 TVRGSENITLNIVEEVMR 254


>gi|307256490|ref|ZP_07538271.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864900|gb|EFM96802.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 428

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 34  MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 89

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 90  LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 143

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  + +V+     D  R +     +I+  +   +   +     FA   ++ M ++A
Sbjct: 144 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 203

Query: 224 LS--RGMGITRSLAAEVLKETQQ 244
               +G  + ++L AEVL E Q 
Sbjct: 204 EISPQGKRLNKALLAEVLGERQA 226


>gi|299143961|ref|ZP_07037041.1| ATPase, AAA family [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518446|gb|EFI42185.1| ATPase, AAA family [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 434

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 70/179 (39%), Gaps = 30/179 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS--RSTRFSNIA---KSLDSILIDTRKPVLLEDIDLLDF 121
           +I  GP G GK+ LA I ++ +  R  + S +    K L  +L +  + +  E+ + + F
Sbjct: 55  MIFYGPPGVGKTTLARIIANTTKKRFVQISAVTSNIKELREVLNEAEEFLKYENKNTILF 114

Query: 122 -NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            ++    H  N           +    +L+ A T    + V    L SR     ++ +  
Sbjct: 115 IDEI---HRFNKTQQDALLPFVEKGIIILIGATTENPYFEVNKA-LVSR---CQILTLEA 167

Query: 173 PDDDFLEKVIVKMFADR------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              + L ++I+K   D        I ID     +++     S      +++ ++   LS
Sbjct: 168 LCQEELRELIIKALNDENGFGNLNIEIDDAAINFLINN---SSGDGRNILNSLEIAILS 223


>gi|90579109|ref|ZP_01234919.1| putative ATPase protein [Vibrio angustum S14]
 gi|90439942|gb|EAS65123.1| putative ATPase protein [Vibrio angustum S14]
          Length = 446

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 40/200 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA + +  + +                + I K+ D+ +   R  + +
Sbjct: 52  MILWGPPGTGKTTLAEVAAHYANAEVERVSAVTSGIKDIRAAIDKARDNKMAGRRTILFV 111

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  +   + A T   S+ +    L SR   A V K+ 
Sbjct: 112 DEVHRFNKSQQDAFLPHI-----EDGTVTFIGATTENPSFELNNA-LLSR---ARVYKLK 162

Query: 172 LPDDDFLEKVIVKMFAD--RQIF---------IDKKLAAYIVQRMERSLVFAEKLVDKM- 219
             +DD + +VI +   D  R +          I +KLA ++      SL + E+L+D   
Sbjct: 163 SLEDDEILQVIEQALTDKERGVSETNIHFADDIKEKLAEFVRGDARMSLNYLEQLIDMAE 222

Query: 220 -DNLALSRGMGITRSLAAEV 238
            D   + +   IT  L AEV
Sbjct: 223 EDEKGIKQ---ITVELLAEV 239


>gi|70951687|ref|XP_745064.1| 26S protease subunit regulatory subunit 6a [Plasmodium chabaudi
           chabaudi]
 gi|56525266|emb|CAH82289.1| 26S protease subunit regulatory subunit 6a, putative [Plasmodium
           chabaudi chabaudi]
          Length = 451

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 64/167 (38%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++ +T        L  + I     ++          
Sbjct: 231 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 290

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +                  +  ++N +     D ++ ++ A   P + 
Sbjct: 291 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDETVKVIAATNRPDTL 350

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     +++  P+++   +++      R++ + K +
Sbjct: 351 DPAL--LRSGRLD--RKIELPHPNEESRARILQ--IHSRKMNVHKDV 391


>gi|82596054|ref|XP_726104.1| 26s protease regulatory subunit 6a [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23481369|gb|EAA17669.1| 26s protease regulatory subunit 6a (tat-binding protein homolog 1)
           (tbp-1). [baker's yeast [Plasmodium yoelii yoelii]
          Length = 450

 Score = 49.0 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 64/167 (38%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++ +T        L  + I     ++          
Sbjct: 230 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 289

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +                  +  ++N +     D ++ ++ A   P + 
Sbjct: 290 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDETVKVIAATNRPDTL 349

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     +++  P+++   +++      R++ + K +
Sbjct: 350 DPAL--LRSGRLD--RKIELPHPNEESRARILQ--IHSRKMNVHKDV 390


>gi|213401062|gb|ACJ47179.1| chromosomal replication initiation protein [Wolbachia endosymbiont
           of Litomosoides sigmodontis]
          Length = 135

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SRL    V  I+    +    ++        I++ + +  ++ + +
Sbjct: 1   RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNIYVSQDVLEFLAKNI 60

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 61  KSNIRELEGALNKVAHTSLI-GRSVTVESASETL 93


>gi|283768972|ref|ZP_06341878.1| recombination factor protein RarA [Bulleidia extructa W1219]
 gi|283104329|gb|EFC05706.1| recombination factor protein RarA [Bulleidia extructa W1219]
          Length = 441

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 77/199 (38%), Gaps = 39/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FND 123
           +IL GP G+GK+ LA + +  ++    S+  +   ++        ++ED  +        
Sbjct: 52  LILTGPPGTGKTSLAMVVAQSTK----SHFEQVNATVAGKKDLEKIVEDASVRKERYGEK 107

Query: 124 TQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N           +    +L+ A T    + V    L SR   ++V ++ 
Sbjct: 108 TILFIDEIHRFNKGQQDYLLPFVEAGLLVLIGATTENPYFEVNRA-LLSR---SSVFQLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
               + + +++ +   D  + +      + +++  ++    E S   A   ++ ++   L
Sbjct: 164 PLLKEDIVQLLKRACGDSKKGMASFMPMVSEEVYDFLA---EVSGGDARVALNALELAIL 220

Query: 225 SRG------MGITRSLAAE 237
           + G        IT  + +E
Sbjct: 221 TTGANEEGYREITLEIVSE 239


>gi|126666165|ref|ZP_01737145.1| putative orphan protein ; putative insertion sequence ATP-binding
           protein [Marinobacter sp. ELB17]
 gi|126629487|gb|EBA00105.1| putative orphan protein ; putative insertion sequence ATP-binding
           protein [Marinobacter sp. ELB17]
          Length = 150

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKS-------------LDSILIDTR 108
           ++L+GPSG+GK+ +AN    +      R   F  IA                    +D  
Sbjct: 1   MLLIGPSGTGKTHIANALGHQLTEQGVRCKLFPAIALVQHLQQAKRDLDLMTAMTRLDKY 60

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + V+++DI  +   D +   LF  I   ++   SL++TA      W    PD
Sbjct: 61  RVVIIDDIGYVKKTDAETQVLFEFIAHRYESG-SLIVTANQPFSEWDQIFPD 111


>gi|59801120|ref|YP_207832.1| recombination factor protein RarA [Neisseria gonorrhoeae FA 1090]
 gi|194098765|ref|YP_002001827.1| recombination factor protein RarA [Neisseria gonorrhoeae NCCP11945]
 gi|239999059|ref|ZP_04718983.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02]
 gi|240014030|ref|ZP_04720943.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI18]
 gi|240016470|ref|ZP_04723010.1| recombination factor protein RarA [Neisseria gonorrhoeae FA6140]
 gi|240080592|ref|ZP_04725135.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19]
 gi|240113038|ref|ZP_04727528.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11]
 gi|240115795|ref|ZP_04729857.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18]
 gi|240118091|ref|ZP_04732153.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1]
 gi|240121596|ref|ZP_04734558.1| recombination factor protein RarA [Neisseria gonorrhoeae PID24-1]
 gi|240123645|ref|ZP_04736601.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332]
 gi|240125829|ref|ZP_04738715.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679]
 gi|240128343|ref|ZP_04741004.1| recombination factor protein RarA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493843|ref|ZP_05107014.1| recombination factor protein RarA [Neisseria gonorrhoeae 1291]
 gi|260440387|ref|ZP_05794203.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2]
 gi|268594903|ref|ZP_06129070.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02]
 gi|268596717|ref|ZP_06130884.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19]
 gi|268599122|ref|ZP_06133289.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11]
 gi|268601473|ref|ZP_06135640.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18]
 gi|268603806|ref|ZP_06137973.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1]
 gi|268682274|ref|ZP_06149136.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332]
 gi|268684428|ref|ZP_06151290.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679]
 gi|268686740|ref|ZP_06153602.1| recombination factor protein RarA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043684|ref|ZP_06569400.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2]
 gi|293398982|ref|ZP_06643147.1| ATPase [Neisseria gonorrhoeae F62]
 gi|59718015|gb|AAW89420.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934055|gb|ACF29879.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512883|gb|EEH62228.1| recombination factor protein RarA [Neisseria gonorrhoeae 1291]
 gi|268548292|gb|EEZ43710.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02]
 gi|268550505|gb|EEZ45524.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19]
 gi|268583253|gb|EEZ47929.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11]
 gi|268585604|gb|EEZ50280.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18]
 gi|268587937|gb|EEZ52613.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1]
 gi|268622558|gb|EEZ54958.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332]
 gi|268624712|gb|EEZ57112.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679]
 gi|268627024|gb|EEZ59424.1| recombination factor protein RarA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012147|gb|EFE04136.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2]
 gi|291610396|gb|EFF39506.1| ATPase [Neisseria gonorrhoeae F62]
 gi|317164351|gb|ADV07892.1| recombination factor protein RarA [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 436

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 26/195 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R  +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             D L+K+I K+ A    R   I+  +   +V   +        L++++   A +R + I
Sbjct: 163 SSDDLKKLIAKVLALPEYRDFTIEADVQELLVNTADGDARRLLNLLEQLLRAADTRRLKI 222

Query: 231 TRSLAAEVLKETQQC 245
              L  E L ++   
Sbjct: 223 ---LTTEFLADSLGA 234


>gi|260913897|ref|ZP_05920371.1| replication-associated recombination protein A [Pasteurella
           dagmatis ATCC 43325]
 gi|260631984|gb|EEX50161.1| replication-associated recombination protein A [Pasteurella
           dagmatis ATCC 43325]
          Length = 446

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113
           +I  GP G+GK+ LA I + +  +                  I ++  + L D R  + +
Sbjct: 53  MIFWGPPGTGKTTLAEIIAQRINAEVERISAVTSGVKEIREAIERAKQNRLSDRRTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169
           +++   + +    F  HI     +  + + +  T              L SR   A V  
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNSA---LLSR---ARVYV 161

Query: 170 ISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +       + +V+ +   D  R +     F+++ L   + + +      A   ++ M ++
Sbjct: 162 LKSLTITEITQVLRQALQDEERGLGKERFFLEENLLEMLAEYVNGDARLALNCLELMSDM 221

Query: 223 ALSR--GMGITRSLAAEVLKETQQ 244
           A     G  + R+L  EVL E Q 
Sbjct: 222 AEEHENGKILNRTLLKEVLGERQA 245


>gi|226311479|ref|YP_002771373.1| hypothetical protein BBR47_18920 [Brevibacillus brevis NBRC 100599]
 gi|226094427|dbj|BAH42869.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 452

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 31/191 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           VI  GP G+GK+ LA + +  +R+      A +     I        E + ++D   T L
Sbjct: 57  VIFYGPPGTGKTTLAKVIARTTRTHFSELNAVTAGVADIRKVVDAAKERL-VMDSQRTTL 115

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V  P L SR   + V  +    
Sbjct: 116 FVDEIHRFNKSQQDALLPYVEEGTIILIGATTENPFFEVN-PALLSR---SQVFSLQSLS 171

Query: 175 DDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            + L++V+ +   D         + ++ + A ++VQ  E     A +L++ ++    +  
Sbjct: 172 HEELKQVMDRALTDEENGLAELFVTVEPEAAEHLVQYAE---GDARRLLNALELAVTTTQ 228

Query: 228 ----MGITRSL 234
                 IT +L
Sbjct: 229 PGADGRITVTL 239


>gi|14520611|ref|NP_126086.1| cell division protein CDC48 [Pyrococcus abyssi GE5]
 gi|5457827|emb|CAB49317.1| Cdc48 cell division control protein 48, AAA family [Pyrococcus
           abyssi GE5]
          Length = 795

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 72/214 (33%), Gaps = 43/214 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G+GK+ LA   + +S++   +                NI +        
Sbjct: 549 PPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQA 608

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL   ++ I +    +++ A   P      
Sbjct: 609 APTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPA 668

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209
           L  L      RL     + +  PD+    ++       R + +   +    + +R E   
Sbjct: 669 L--LRPGRFDRL-----ILVPAPDEKARFEIFKVHT--RGMPLADDVDLKELARRTEGYT 719

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                 V + +   ++    + + +    +K ++
Sbjct: 720 GADIAAVCR-EAAMIAMRRALEKGIIKPGMKASE 752



 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  +  +  + 
Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274

Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 275 APAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAID-- 332

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    +++ +PD    ++++      R + I+  
Sbjct: 333 -PALRRPGRFDREIEVGVPDRQGRKEILQ--IHTRGMPIEPD 371


>gi|257126269|ref|YP_003164383.1| recombination factor protein RarA [Leptotrichia buccalis C-1013-b]
 gi|257050208|gb|ACV39392.1| AAA ATPase central domain protein [Leptotrichia buccalis C-1013-b]
          Length = 409

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 39/233 (16%)

Query: 29  FFSFPRCLGISRDDL-----LVHSAIEQAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLA 81
             +F      S DD      LV        ++I+         +  I  G  G+GK+ LA
Sbjct: 13  PLAFRYRPK-SLDDFYGQKRLVGE-NGILRKIIER-----GNFMNAIFWGAPGTGKTTLA 65

Query: 82  NIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH- 134
            I S+K        + I  S+  I   + K     +   ++   T LF    H  N +  
Sbjct: 66  EIISNKMNYHYEYLNAIKASVADIKEISEKAA---NRFHMNGQQTLLFLDEIHRFNKLQQ 122

Query: 135 -------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
                  +  + +L+ A T    + +    L SR       +     +  L +++  +  
Sbjct: 123 DSLLQDLENGNIILIGATTENPYYNLNNA-LLSR---CLAFEFKKLSEKNLMEILKNINE 178

Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
                I   +  YI + +E     A  +++ + N+    G+  T     E+L 
Sbjct: 179 KENFGISDDILEYISEIIEGDARQAINILELITNV----GVEFTLEEVKEILN 227


>gi|124515828|gb|EAY57337.1| probable ATPase, AAA family [Leptospirillum rubarum]
          Length = 444

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 26/174 (14%)

Query: 65  RVVILVGPSGSGKS---CLAN----------IWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           R +++ GP G GKS    L               + S       I + +          +
Sbjct: 48  RSMVIHGPPGCGKSAFVHLLQKVLPFHFEVVRAGESSGGELKKAIDRGVSYRQSGQDCLL 107

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++E+ID        +             LL+   +F       LP L SRL    +    
Sbjct: 108 VIEEIDRFTRTQQDVL----VPALERGDLLLLGLSFDNPLRALLPPLASRL---LLFSFQ 160

Query: 172 LPDDDFLEKVIVKMF-----ADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               + L  ++ +        DR  + I  + A+ +V+R          L + +
Sbjct: 161 PLSPEDLLTLLERGRQFLEKRDRSPVSISPEAASVLVRRSGGDGRKLLLLFEAL 214


>gi|295094324|emb|CBK83415.1| ATPase involved in DNA replication initiation [Coprococcus sp.
          ART55/1]
          Length = 152

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSD 86
              + ++ +V  + + A     +    P       + L G SG GK+ L    + 
Sbjct: 21 RPDYTFENFIVGESNKHAHATCLAVADSPGQDKFNPLFLYGGSGLGKTHLMQSIAH 76


>gi|57867117|ref|YP_188766.1| recombination factor protein RarA [Staphylococcus epidermidis
           RP62A]
 gi|251811032|ref|ZP_04825505.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875948|ref|ZP_06284815.1| recombination factor protein RarA [Staphylococcus epidermidis
           SK135]
 gi|57637775|gb|AAW54563.1| ATPase, AAA family [Staphylococcus epidermidis RP62A]
 gi|251805450|gb|EES58107.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294973|gb|EFA87500.1| recombination factor protein RarA [Staphylococcus epidermidis
           SK135]
 gi|329735258|gb|EGG71550.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU045]
 gi|329737108|gb|EGG73362.1| recombination factor protein RarA [Staphylococcus epidermidis
           VCU028]
          Length = 423

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLIVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           D D +   + +   D  R +      +D+    Y   +   S       ++ ++   LS 
Sbjct: 152 DQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    IT   A + L++
Sbjct: 209 HIGEENERHITLDDAKDCLQK 229


>gi|31983694|ref|NP_858202.1| IS21 ORF2 [Shigella flexneri 2a str. 301]
 gi|18462686|gb|AAL72458.1| IS21 ORF2 [Shigella flexneri 2a str. 301]
 gi|281603817|gb|ADA76800.1| IS21 ORF2 [Shigella flexneri 2002017]
 gi|333010210|gb|EGK29644.1| istB-like ATP binding family protein [Shigella flexneri K-218]
 gi|333010936|gb|EGK30360.1| istB-like ATP binding family protein [Shigella flexneri K-218]
          Length = 208

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 25/145 (17%)

Query: 32  FPRCLGISRDDLLVHSA-IEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKS 88
            P    +S  D +          + +     W      V+L G SG GKS LA    D  
Sbjct: 23  LPVAKTLSEYDFIQLPELNGAQFQQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGV 82

Query: 89  RSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFNDTQ---LF 127
               +     S   +L + RK                   ++++D+  +  +  +   LF
Sbjct: 83  VGQGYRARFYSAGELLQELRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLF 142

Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152
            +I   ++   SL++T+      WG
Sbjct: 143 ELIAHRYERG-SLVITSNHPFSMWG 166


>gi|300120406|emb|CBK19960.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112
           ++L GP G+GK+ LA   + ++ +      A  LD   I     ++              
Sbjct: 186 ILLYGPPGTGKTLLARACAKQTDAAFIKLSATVLDQAHIGEGSRIVRDCFSLAKKKIEEK 245

Query: 113 --------LEDIDLLDFN-----------DTQLFHIINSIH--QYDSSL-LMTARTFPVS 150
                   ++++D +                 L  ++N++     DS + ++ A   P  
Sbjct: 246 QAKGSIIFIDELDAIGIKRSGDGEGSHEVQRTLLELLNAMDGFSSDSRIKVIAATNRPDI 305

Query: 151 WGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY-IVQRMERS 208
               L  L S R      V++  P+++   K++      +++ ++++   +  + R    
Sbjct: 306 LDPAL--LRSGRFD--RKVELPNPNEEARVKILQ--IHSKKLVLNRESVNFEEIARCTED 359

Query: 209 LVFAEKLVDKMDNLALSRGMGIT 231
              A      ++   L+   G +
Sbjct: 360 FSGAMLRAVCVEAGMLALRRGAS 382


>gi|320181378|gb|EFW56296.1| transposase-associated ATP-binding protein, putative [Shigella
           boydii ATCC 9905]
          Length = 186

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 25/144 (17%)

Query: 33  PRCLGISRDDLLVHSA-IEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P    +S  D +          R +     W      V+L G SG GKS LA    D   
Sbjct: 2   PVAKTLSEYDFIQLPELNGAQFRQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGVV 61

Query: 90  STRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFNDTQ---LFH 128
              +     S   +L + RK                   ++++D+  +  +  +   LF 
Sbjct: 62  GQGYRARFYSAGELLQELRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLFE 121

Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152
           +I   ++   SL++T+      WG
Sbjct: 122 LIAHRYERG-SLVITSNHPFSMWG 144


>gi|146448775|gb|ABQ41382.1| cell division cycle 48 [Paralichthys olivaceus]
          Length = 806

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAAANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|308813520|ref|XP_003084066.1| sister chromatid cohesion-related (ISS) [Ostreococcus tauri]
 gi|116055949|emb|CAL58482.1| sister chromatid cohesion-related (ISS) [Ostreococcus tauri]
          Length = 739

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 71/175 (40%), Gaps = 31/175 (17%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSR----STRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            +++++ GP G GK+ LA+I +          + ++   S  + +    K V++++ID +
Sbjct: 225 EKILLISGPPGVGKTTLAHIAAKHCGYELLKVKLADALHSCSAFVQQKPKCVIIDEIDGV 284

Query: 120 ---DFNDTQLFHIINSIHQY--DSSL----------LMTARTFPVSWGVCLPDLCSRLKA 164
                +   ++ ++N++      + L          L      P      L D+      
Sbjct: 285 HNAGGDRGAIYAVLNALKSQKGGAPLSRPIIAICNDLYCTSLRP------LRDV------ 332

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           A V+++  P +  L   I ++ A   + ++ +  A + +R+   +  A   +  +
Sbjct: 333 AKVIRVKPPPNATLNGRIREICAKENVDVEPRAVALVAERVNNDIRSALHTIQLI 387


>gi|296133419|ref|YP_003640666.1| AAA ATPase central domain protein [Thermincola sp. JR]
 gi|296031997|gb|ADG82765.1| AAA ATPase central domain protein [Thermincola potens JR]
          Length = 445

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 95/252 (37%), Gaps = 45/252 (17%)

Query: 23  NKEEQLFFSFPRCLGISR---DDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74
           N++ QL    P  + +     D+      +V    +   R I++        VI  GP G
Sbjct: 7   NRQNQLKKEAPLAVRMRPRTLDEFVGQEQIVGPG-KLLRRAIEADQ---LSSVIFYGPPG 62

Query: 75  SGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HII 130
           +GK+ LA + ++ +++      A +     +        E +  +    T LF    H  
Sbjct: 63  TGKTTLAKVIANTTKAFFVQVNAVTSGVAELREVIQNAKERL-GMYGQRTILFIDEIHRF 121

Query: 131 NSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
           N           +  + +L+ A T    + V  P L SR   + + K     +D + K++
Sbjct: 122 NKSQQDALLPYVEDGTIILIGATTENPYFEVNAP-LRSR---SRIFKFESLSNDDIRKLL 177

Query: 183 VKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG------MG 229
            +   D+       ++ + ++   ++V   + S   A   ++ ++   L+          
Sbjct: 178 WRALQDKEAGLGNYKVDLTEEALEHLV---DISSGDARTALNALELAVLTTAPDEKGVRK 234

Query: 230 ITRSLAAEVLKE 241
           IT  +A E +++
Sbjct: 235 ITLEVAEESIQK 246


>gi|163915553|gb|AAI57421.1| Unknown (protein for MGC:179840) [Xenopus laevis]
          Length = 339

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 28/148 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  ++ +    +  S  S      +  +         N+ 
Sbjct: 185 PSIILWGPPGCGKTTLAHIIAKNAQKSSSRFVTLSATSASTSDVREFI-----KQAQNEQ 239

Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +LF           H  N + Q          +  L+ A T   S+ V    L SR    
Sbjct: 240 RLFKRKTILFVDEIHRFNKMQQDTFLPHVECGTITLIGATTENPSFQVNTA-LLSR---C 295

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193
            V+ +     + +E ++++      + +
Sbjct: 296 RVIVLEKLSVEAMETILMRAVDSLGLKV 323


>gi|147902451|ref|NP_001089187.1| Werner helicase interacting protein 1 [Xenopus laevis]
 gi|63147358|dbj|BAD98297.1| Werner helicase interacting protein 1 [Xenopus laevis]
          Length = 572

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 28/148 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  ++ +    +  S  S      +  +         N+ 
Sbjct: 185 PSIILWGPPGCGKTTLAHIIAKNAQKSSSRFVTLSATSASTSDVREFI-----KQAQNEQ 239

Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +LF           H  N + Q          +  L+ A T   S+ V    L SR    
Sbjct: 240 RLFKRKTILFVDEIHRFNKMQQDTFLPHVECGTITLIGATTENPSFQVNTA-LLSR---C 295

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193
            V+ +     + +E ++++      + +
Sbjct: 296 RVIVLEKLSVEAMETILMRAVDSLGLKV 323


>gi|327413090|emb|CAX68119.1| putative insertion sequence protein [Salmonella enterica subsp.
           enterica]
          Length = 254

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 25/145 (17%)

Query: 32  FPRCLGISRDDL-LVHSAIEQAVRLIDSWPSWPSR--VVILVGPSGSGKSCLANIWSD-- 86
            P    ++  D   V       VR +     W      V+L G SG GKS LA   +D  
Sbjct: 66  LPVGKTLAEYDFGQVPELNAAQVRQLCETTDWVDSGENVLLFGASGLGKSHLAAAIADGV 125

Query: 87  --KSRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDIDLLDFNDTQ---LF 127
             +    RF +  + L  +               +D  + ++++D+  +  ++ +   LF
Sbjct: 126 VSQGHRVRFYSAGELLQELRKARSLLRLNEMLLKLDRYRVIVIDDLGYVKRDNAETGVLF 185

Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152
            +I   ++   SL++T+     +WG
Sbjct: 186 ELIAHRYERG-SLIITSNHPFSTWG 209


>gi|326391411|ref|ZP_08212948.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992546|gb|EGD51001.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 443

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ LA I ++ + S    FS +   +  I     K     ++D +    T
Sbjct: 56  MILWGPPGVGKTTLAMIIANMTNSKFITFSAVLSGIKEIKEIMAKA----ELDAMYGTRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ V    L SR   + V  +  
Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167

Query: 173 PDDDFLEKVIVKMFAD--RQIFI 193
             ++ L  ++ +   D  R + +
Sbjct: 168 LTEEDLLVLLKRALRDKERGLGM 190


>gi|288560385|ref|YP_003423871.1| replication factor C large subunit RfcL [Methanobrevibacter
           ruminantium M1]
 gi|288543095|gb|ADC46979.1| replication factor C large subunit RfcL [Methanobrevibacter
           ruminantium M1]
          Length = 530

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 87/216 (40%), Gaps = 41/216 (18%)

Query: 54  RLIDSWPSW-PSRVVILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKS 99
             + SW    P + ++L+GP+G+GK+ +A+I ++             +S+    S I +S
Sbjct: 27  DWLQSWQDGNPQKPLLLIGPAGTGKTTIAHIIANEFSEYIELNASDKRSQDVLMSTIGES 86

Query: 100 LD--SILIDTRKPVLLEDIDLLDF-NDTQLFHIIN-SIHQYDSSLLMTARTFPVSWGVCL 155
               S+  + +K ++++++D +   ND      +N  I      ++M A  F  +    +
Sbjct: 87  ATTKSLFGENKKLIIMDEVDGIHGTNDRGGTSALNKIIKNSKQPIVMMANDFYSNKLTTI 146

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLV 210
                  K A V+K+    D      I K   D       I +D  +   +++  +RS  
Sbjct: 147 K------KNAQVIKM----DKIRAPTINKFLRDVVLKNEGIEVDPDV---LMKLSKRSSG 193

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
                ++ +    +  G  +T     E L  T Q D
Sbjct: 194 DLRSAINTL-QALVENGGELT----EETLDTTGQKD 224


>gi|221056340|ref|XP_002259308.1| 26S protease subunit regulatory subunit; 26S protease subunit
           regulatory subunit 6a [Plasmodium knowlesi strain H]
 gi|193809379|emb|CAQ40081.1| 26S protease subunit regulatory subunit 6a,putative [Plasmodium
           knowlesi strain H]
          Length = 440

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 63/167 (37%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++ +T        L  + I     ++          
Sbjct: 220 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 279

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D+  ++ A   P + 
Sbjct: 280 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTL 339

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     +++  P+++   +++      R++ + K +
Sbjct: 340 DPAL--LRSGRLD--RKIELPHPNEESRARILQ--IHSRKMNVHKDV 380


>gi|188591563|ref|YP_001796162.1| transposase, IS21 family [Cupriavidus taiwanensis]
 gi|170938958|emb|CAP63965.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424]
          Length = 273

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 30/150 (20%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
            F F           +V  A   A+   DSW       ++L GP G GK+ L +      
Sbjct: 79  SFDFGMVP-------MVSKAHVMALATGDSWLE-KGATILLFGPPGGGKTHLGSGIGHAL 130

Query: 89  RSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDTQ---LF 127
               +  +      I+                  +D    ++L+D+  +  +  +   LF
Sbjct: 131 IDAGYRVLFTRTSEIVQKLQVARQSLQLPSMLGKLDRFDLIILDDLSYVRKDQAETSVLF 190

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +I +      SLL+TA      W    PD
Sbjct: 191 ELI-AERYERRSLLITANQPFSGWNDVFPD 219


>gi|15966880|ref|NP_387233.1| transposase [Sinorhizobium meliloti 1021]
 gi|15076153|emb|CAC47706.1| Putative transposase number 2 for insertion sequence ISRm27
           [Sinorhizobium meliloti 1021]
          Length = 247

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------WS-------DKS 88
           V  A   A+   DSW +     ++L GP G GKS LA           W        D  
Sbjct: 89  VSKAQVMAIAAGDSWLA-KGASILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV 147

Query: 89  RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143
           +  + +     L+S +  +D    ++L+D+  +  +  +   LF +I S      S+++T
Sbjct: 148 QKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELI-SARYERRSIMIT 206

Query: 144 ARTFPVSWGVCLPD 157
           A      W    PD
Sbjct: 207 ANQPFGEWNRVFPD 220


>gi|320160096|ref|YP_004173320.1| hypothetical protein ANT_06860 [Anaerolinea thermophila UNI-1]
 gi|319993949|dbj|BAJ62720.1| hypothetical protein ANT_06860 [Anaerolinea thermophila UNI-1]
          Length = 473

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 34/151 (22%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----- 104
           E A    ++   W    ++L G  G GK+ LA    +   S     +   +  +L     
Sbjct: 311 EIAYEFAENPRGW----LVLSGDYGCGKTHLAAAIGNYQASLGNPPLFVVVPDLLDHLRS 366

Query: 105 ----------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
                           + + K ++L+D+       +   +L+ IIN  +  +   ++T  
Sbjct: 367 TFSPTSNVSYDEVFEEVRSAKLLILDDLGTQSATPWAREKLYQIINHRYIAELPTVITTS 426

Query: 146 TFPVSWGVCLPDLCSRL---KAATVVKISLP 173
           + P       P + SR+   +  T   I  P
Sbjct: 427 SKPEEID---PRIRSRMLDRRLCTWFAIQAP 454



 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 29/153 (18%)

Query: 48  AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL--- 104
           ++E A      +    +  ++L+G  G GK+ LA   + ++ S     +  ++  +L   
Sbjct: 113 SLENAFEQAQKYAHSLNGWLLLIGGYGVGKTHLAAAIAHEAVSLGVPTLFLTVPDLLDWL 172

Query: 105 -----------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTA 144
                            I   + ++L+D+   +   +   +L+ I N  + +  S ++T 
Sbjct: 173 RYAYDAPDDTFEARFEEIRNIRLLVLDDLGTQNATAWAQEKLYQIFNHRYIHRLSTVITT 232

Query: 145 RTFPVSWGVCLPDLCSRLK---AATVVKISLPD 174
                     +    SRL+       V+I   D
Sbjct: 233 NQALEEIEGRI---QSRLRDIELVNTVRIEAQD 262


>gi|256840534|ref|ZP_05546042.1| recombination factor protein RarA [Parabacteroides sp. D13]
 gi|256737806|gb|EEU51132.1| recombination factor protein RarA [Parabacteroides sp. D13]
          Length = 423

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT---------RKP 110
              IL GP G GK+ LA I ++K  +     +  S+  K +  ++               
Sbjct: 41  PSFILWGPPGVGKTTLAQIIANKLDAPFYTLSAISSGVKDVREVIEKAKSNRFFNTVSPI 100

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + +++I     +      ++N++ +     L+ A T   S+ V  P L SR     V  +
Sbjct: 101 LFIDEIHRFSKSQQD--SLLNAV-ETGVVTLIGATTENPSFEVIRP-LLSR---CQVYVL 153

Query: 171 SLPDDDFLEKVIVKMFAD 188
              D + L  ++ K  A+
Sbjct: 154 KSLDKNDLLTLLHKAIAE 171


>gi|185132242|ref|NP_001117982.1| valosin containing protein [Oncorhynchus mykiss]
 gi|51949893|gb|AAU14869.1| valosin containing protein [Oncorhynchus mykiss]
          Length = 748

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 179 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 238

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 239 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDAA 298

Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKV 181
           L              PD   RL+        + L DD  LE+V
Sbjct: 299 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQV 341



 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 452 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 508


>gi|158339873|ref|YP_001521043.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158340240|ref|YP_001521410.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158340868|ref|YP_001522036.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158341505|ref|YP_001522669.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158341575|ref|YP_001522739.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158310114|gb|ABW31729.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158310481|gb|ABW32096.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158311109|gb|ABW32722.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158311746|gb|ABW33355.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158311816|gb|ABW33425.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 243

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 36/146 (24%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81
           F F  C  +              +  + + P W       +IL GPSG GK+ LA     
Sbjct: 57  FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 105

Query: 82  ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125
                      ++  +   +       L        +D    ++L+D+     ++ +   
Sbjct: 106 KMLEFGKRVKFFAANALVQQLQQAKLQLQLHPMLKKLDRYDLLILDDLGYCKKSEAETSV 165

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151
           LF +I +      SLL+TA      W
Sbjct: 166 LFELI-AHRYERKSLLITANQPFSQW 190


>gi|183220685|ref|YP_001838681.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910786|ref|YP_001962341.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775462|gb|ABZ93763.1| helicase-like ATPase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779107|gb|ABZ97405.1| Putative ATPase involved in DNA replication [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 419

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 35/234 (14%)

Query: 25  EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
            +Q+  +       +  + +  + +  A+R I    S     ++  GP G+GK+ LA++ 
Sbjct: 8   SKQVPLAHLVRPK-TWSEFVGQTKVVAALRSITKPTS-----ILFYGPPGTGKTTLAHLL 61

Query: 85  SDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIH 134
           ++  +         ++    + + L+         + L++I     +    L     S  
Sbjct: 62  AESWKLEKRYLSCVTSGVKEVREVLEEGKRLGTIVLFLDEIHRFSSSQQDALL----SAV 117

Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI----SLPDDDFLEKVIVKMFADRQ 190
           +    +L+ A T   S+ V    L SR+    V ++       +D      + K   +R 
Sbjct: 118 EEGEIILIAATTENPSFRVNKA-LLSRM---LVYRLTTLTEEEEDQIFLSCLEKQNTNR- 172

Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGITRSLAAEVLKET 242
             I + +   + +   RS   A KL+  ++    A   G  IT    +E+L +T
Sbjct: 173 -TISETVKQELFR---RSAGDARKLLGYLERILFATKEGEAITDERLSEILGDT 222


>gi|325184659|emb|CCA19151.1| hypothetical protein SELMODRAFT_145748 [Albugo laibachii Nc14]
          Length = 799

 Score = 48.6 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 233 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 292

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + Q  + +++ A   P S    
Sbjct: 293 APAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKQRANVVVIGATNRPNSMD-- 350

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+  + ++ +     R + +   +
Sbjct: 351 -PALR-RFGRFDREIDIGVPDE--IGRLEIFRIHTRNMKLADDV 390



 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 506 PSRGVLFYGPPGCGKTLLAKAVANECQANFISVKGPELLTMWFGESEANVREVFDKA 562


>gi|18129327|emb|CAC83487.1| DnaA protein [Wolbachia endosymbiont of Onchocerca volvulus]
          Length = 141

 Score = 48.6 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SRL    V  I+    +    ++        I++   +  ++ + ++ ++   E  ++K
Sbjct: 3   KSRLGWGLVADINETTFELRLGILQIKVEQMNIYVPDDVLEFLAKNIKSNIRELEGALNK 62

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQCD 246
           + + +L  G  IT   A+E L +  + +
Sbjct: 63  VVHTSLI-GRSITVESASETLADLLRSN 89


>gi|315444680|ref|YP_004077559.1| recombination protein MgsA [Mycobacterium sp. Spyr1]
 gi|315262983|gb|ADT99724.1| Recombination protein MgsA [Mycobacterium sp. Spyr1]
          Length = 446

 Score = 48.6 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 30/175 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
           VIL GP G+GK+ LA++ S  +          +   K + +++   R+  +        +
Sbjct: 63  VILYGPPGTGKTTLASMISQATGRRFEALSALAAGVKEVRAVIDVARQAAVRGEQTVLFI 122

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 123 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 174

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
                +  VI +   D R +     +       +V     S   A + +  ++  
Sbjct: 175 LTPADVTTVIRRAITDERGLGGRVTVSDDAIEQLVL---LSAGDARRALTALEVA 226


>gi|260811638|ref|XP_002600529.1| hypothetical protein BRAFLDRAFT_276686 [Branchiostoma floridae]
 gi|229285816|gb|EEN56541.1| hypothetical protein BRAFLDRAFT_276686 [Branchiostoma floridae]
          Length = 718

 Score = 48.6 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 54/202 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 151 PPRGILLYGPPGVGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 210

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + Q    ++M A   P S    
Sbjct: 211 APAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSIDAA 270

Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           L              PD   RL+        + L DD  LE+V     ++    +   LA
Sbjct: 271 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV----ASETHGHVGSDLA 326

Query: 199 AYIVQRMERSLVFAEKLVDKMD 220
           A        S    +++ +KMD
Sbjct: 327 ALC------SEAALQQIREKMD 342



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 424 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 480


>gi|158341448|ref|YP_001522613.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158311689|gb|ABW33299.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 231

 Score = 48.6 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 36/146 (24%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81
           F F  C  +              +  + + P W       +IL GPSG GK+ LA     
Sbjct: 45  FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 93

Query: 82  ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125
                      ++  +   +       L        +D    ++L+D+     ++ +   
Sbjct: 94  KMLEFGKRVKFFAANALVQQLQQAKLQLQLHPMLKKLDRYDLLILDDLGYCKKSEAETSV 153

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151
           LF +I +      SLL+TA      W
Sbjct: 154 LFELI-AHRYERKSLLITANQPFSQW 178


>gi|289450570|ref|YP_003475446.1| recombination factor protein RarA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185117|gb|ADC91542.1| recombination factor protein RarA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 433

 Score = 48.2 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 27/171 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLD 120
           +IL GP G+GKS LA + +  +     R    +     +  I+ D   P+L  E   +L 
Sbjct: 43  IILFGPPGTGKSSLAKVIAATTKLPFKRLNAVTAGVTDIKQIIADAANPLLTPEGQVILF 102

Query: 121 FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            ++    H  N +         +    +L+ A T    + V    L SR   ATV ++  
Sbjct: 103 IDEI---HRFNKLQQDALLPSVEAGLVILIGATTENPYFEVNKA-LISR---ATVFQLFP 155

Query: 173 PDD-DFLEKVIVKMFADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVD 217
             + D L  +   + ++R +      +++    +I          A   ++
Sbjct: 156 LSETDILTILRRSLTSERGLAAWQAEVEETALQFIANHCNGDARIALNALE 206


>gi|15609696|ref|NP_217075.1| recombination factor protein RarA [Mycobacterium tuberculosis
           H37Rv]
 gi|15842097|ref|NP_337134.1| recombination factor protein RarA [Mycobacterium tuberculosis
           CDC1551]
 gi|148662398|ref|YP_001283921.1| recombination factor protein RarA [Mycobacterium tuberculosis
           H37Ra]
 gi|148823755|ref|YP_001288509.1| recombination factor protein RarA [Mycobacterium tuberculosis F11]
 gi|167968830|ref|ZP_02551107.1| recombination factor protein RarA [Mycobacterium tuberculosis
           H37Ra]
 gi|215404508|ref|ZP_03416689.1| recombination factor protein RarA [Mycobacterium tuberculosis
           02_1987]
 gi|215412332|ref|ZP_03421092.1| recombination factor protein RarA [Mycobacterium tuberculosis
           94_M4241A]
 gi|215446810|ref|ZP_03433562.1| recombination factor protein RarA [Mycobacterium tuberculosis T85]
 gi|218754298|ref|ZP_03533094.1| recombination factor protein RarA [Mycobacterium tuberculosis GM
           1503]
 gi|253798360|ref|YP_003031361.1| hypothetical protein TBMG_01413 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232680|ref|ZP_04926007.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis C]
 gi|254551610|ref|ZP_05142057.1| recombination factor protein RarA [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289553651|ref|ZP_06442861.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289746351|ref|ZP_06505729.1| recombination factor protein RarA [Mycobacterium tuberculosis
           02_1987]
 gi|289758688|ref|ZP_06518066.1| recombination factor protein RarA [Mycobacterium tuberculosis T85]
 gi|289762729|ref|ZP_06522107.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|294994330|ref|ZP_06800021.1| recombination factor protein RarA [Mycobacterium tuberculosis 210]
 gi|297635170|ref|ZP_06952950.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN
           4207]
 gi|297732162|ref|ZP_06961280.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN
           R506]
 gi|298526033|ref|ZP_07013442.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306776833|ref|ZP_07415170.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|306780598|ref|ZP_07418935.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu002]
 gi|306785361|ref|ZP_07423683.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|306789961|ref|ZP_07428283.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu004]
 gi|306794041|ref|ZP_07432343.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu005]
 gi|306798440|ref|ZP_07436742.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu006]
 gi|306804319|ref|ZP_07440987.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu008]
 gi|306807642|ref|ZP_07444310.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|306969843|ref|ZP_07482504.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|306972948|ref|ZP_07485609.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|307080659|ref|ZP_07489829.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu011]
 gi|307085246|ref|ZP_07494359.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|313659496|ref|ZP_07816376.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN
           V2475]
 gi|2496491|sp|Q50739|Y2559_MYCTU RecName: Full=Uncharacterized AAA domain-containing protein
           Rv2559c/MT2636
 gi|1460081|emb|CAB01045.1| CONSERVED HYPOTHETICAL ALANINE LEUCINE VALINE RICH PROTEIN
           [Mycobacterium tuberculosis H37Rv]
 gi|13882379|gb|AAK46948.1| ATPase, AAA family [Mycobacterium tuberculosis CDC1551]
 gi|124601739|gb|EAY60749.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis C]
 gi|148506550|gb|ABQ74359.1| conserved hypothetical alanine,leucine and valine rich protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148722282|gb|ABR06907.1| conserved alanine, leucine and valine rich protein [Mycobacterium
           tuberculosis F11]
 gi|253319863|gb|ACT24466.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 1435]
 gi|289438283|gb|EFD20776.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289686879|gb|EFD54367.1| recombination factor protein RarA [Mycobacterium tuberculosis
           02_1987]
 gi|289710235|gb|EFD74251.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|289714252|gb|EFD78264.1| recombination factor protein RarA [Mycobacterium tuberculosis T85]
 gi|298495827|gb|EFI31121.1| conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308214760|gb|EFO74159.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|308326532|gb|EFP15383.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu002]
 gi|308329953|gb|EFP18804.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308333570|gb|EFP22421.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308337597|gb|EFP26448.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308341263|gb|EFP30114.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308345964|gb|EFP34815.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|308349070|gb|EFP37921.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu008]
 gi|308352653|gb|EFP41504.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|308357638|gb|EFP46489.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|308361580|gb|EFP50431.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu011]
 gi|308365200|gb|EFP54051.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|323718832|gb|EGB27988.1| hypothetical protein TMMG_02570 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904174|gb|EGE51107.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis W-148]
 gi|328458130|gb|AEB03553.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis KZN 4207]
          Length = 452

 Score = 48.2 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 27/156 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
           VIL GP GSGK+ LA + S  +          S   K + +++ ++RK +L        +
Sbjct: 68  VILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFI 127

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     S  ++   LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 128 DEVHRFSKTQQDALL----SAVEHRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 179

Query: 173 PDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQ 203
              +    V+ +   D     R + +  +    +VQ
Sbjct: 180 LTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQ 215


>gi|158339520|ref|YP_001520909.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158339666|ref|YP_001520673.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158340521|ref|YP_001521515.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158309761|gb|ABW31377.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158309907|gb|ABW31523.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158310762|gb|ABW32376.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 243

 Score = 48.2 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 36/146 (24%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81
           F F  C  +              +  + + P W       +IL GPSG GK+ LA     
Sbjct: 57  FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 105

Query: 82  ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125
                      ++  +   +       L        +D    ++L+D+     ++ +   
Sbjct: 106 KMLEFGKRVKFFAANALVQQLQQAKLQLQLHPMLKKLDRYDLLILDDLGYCKKSEAETSV 165

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151
           LF +I +      SLL+TA      W
Sbjct: 166 LFELI-AHRYERKSLLITANQPFSQW 190


>gi|78213812|ref|YP_382591.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Synechococcus sp. CC9605]
 gi|78198271|gb|ABB36036.1| ATPase [Synechococcus sp. CC9605]
          Length = 721

 Score = 48.2 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I ++ +R+   S  A       + T      + ++      T L
Sbjct: 57  LILHGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKNLRTEVDAARQRLERHGLR-TIL 115

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  +  L+ A T    + V    L SR   + + ++   +
Sbjct: 116 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKA-LVSR---SRLFRLLPLE 171

Query: 175 DDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            + L++++ +  A       DR I I    A ++V             ++
Sbjct: 172 PEDLQRLLQRALADNERGYGDRAIAISSDAANHLVDVAGGDARSLLNALE 221


>gi|240143952|ref|ZP_04742553.1| ATPase, AAA family [Roseburia intestinalis L1-82]
 gi|257203986|gb|EEV02271.1| ATPase, AAA family [Roseburia intestinalis L1-82]
 gi|291534968|emb|CBL08080.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Roseburia intestinalis M50/1]
 gi|291539530|emb|CBL12641.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Roseburia intestinalis XB6B4]
          Length = 443

 Score = 48.2 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 78/207 (37%), Gaps = 47/207 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A S     +        ED+     N+  +
Sbjct: 55  IILYGPPGTGKTTLAKVIANSTSAEFLQMNATSAGKKDM--------EDVIAKAKNNMGM 106

Query: 127 F-----------HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           F           H  N           +  + +L+ A T    + V    L SR   + +
Sbjct: 107 FGKKTILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SII 162

Query: 168 VKISLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
            ++   + + ++ +I++   D Q         ID+    ++    + S   A   +  ++
Sbjct: 163 FELKSLEKEDIKTLILRAVNDTQKGMGAYHAVIDEDALDFLA---DISNGDARAALTAVE 219

Query: 221 NLALSRGMG------ITRSLAAEVLKE 241
              L+          IT S+A+E +++
Sbjct: 220 LGILTTERSGDGLIHITLSVASECIQK 246


>gi|18129335|emb|CAC83491.1| DnaA protein [Wolbachia endosymbiont of Wuchereria bancrofti]
          Length = 135

 Score = 48.2 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SRL    V  I+    +    ++        +++ + +  ++ + +
Sbjct: 1   RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVPQDVLEFLARNI 60

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             ++   E  ++K+ + +L  G  +T   A+E L +  + +
Sbjct: 61  RSNIRELEGALNKVAHTSLI-GRSMTVESASETLMDLLRSN 100


>gi|156098805|ref|XP_001615418.1| 26S protease subunit regulatory subunit 6a [Plasmodium vivax SaI-1]
 gi|148804292|gb|EDL45691.1| 26S protease subunit regulatory subunit 6a, putative [Plasmodium
           vivax]
          Length = 441

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 63/167 (37%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++ +T        L  + I     ++          
Sbjct: 221 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 280

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D+  ++ A   P + 
Sbjct: 281 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTL 340

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     +++  P+++   +++      R++ + K +
Sbjct: 341 DPAL--LRSGRLD--RKIELPHPNEESRARILQ--IHSRKMNVHKDV 381


>gi|307265951|ref|ZP_07547499.1| AAA ATPase central domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919015|gb|EFN49241.1| AAA ATPase central domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 443

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ LA I ++ + S    FS +   +  I     K     ++D +    T
Sbjct: 56  MILWGPPGVGKTTLAMIIANMTNSKFITFSAVLSGIKEIKEIMAKA----ELDAMYGTRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ V    L SR   + V  +  
Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167

Query: 173 PDDDFLEKVIVKMFAD--RQIFI 193
             ++ L  ++ +   D  R + +
Sbjct: 168 LTEEDLLVLLKRALRDKERGLGM 190


>gi|148264914|ref|YP_001231620.1| IstB ATP binding domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146398414|gb|ABQ27047.1| IstB domain protein ATP-binding protein [Geobacter uraniireducens
           Rf4]
          Length = 245

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 33/148 (22%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV------ILVGPSGSGKSCLANIWS 85
           FP    + R +       E  VR +     +    +      I+VG +G+GK+ LA   +
Sbjct: 66  FPVDKDLDRFEFTASPVNEMQVRHL-----YSGNFLADHTNIIMVGGTGTGKTHLAIAIA 120

Query: 86  DKS-------RSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND-----------T 124
            +S       R     ++   L+   +D R   L E +   DL+  ++            
Sbjct: 121 KQSIRNGRKARFFNVLDLVNQLEQEKLDNRGGKLAEHLVRHDLVILDELGYLPFSKNGGQ 180

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWG 152
            LFH+I+ +++  +SL++T       W 
Sbjct: 181 LLFHLISKLYER-TSLIITTNLTFGEWP 207


>gi|257065126|ref|YP_003144798.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
 gi|256792779|gb|ACV23449.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476]
          Length = 439

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 28/172 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I + ++ +    FS +   +  I    ++    E+ +      T
Sbjct: 51  MIFWGPPGVGKTTLAQIIAHQTNAKFVNFSAVTSGIKEIRQVMKQA---EN-NRSLGEKT 106

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T   S+ V    L SR     V  +  
Sbjct: 107 ILFVDEIHRFNKAQQDAFLPFVEKGTIILIGATTENPSFEVNGA-LLSR---CKVFVLKA 162

Query: 173 PDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            +   L +++ +       F D+Q+ +  +L   I          A   ++ 
Sbjct: 163 LETADLAELLDRAIHDPRGFGDQQVDVSDELLEAIATFANGDARTALSTLEM 214


>gi|159905162|ref|YP_001548824.1| AAA family ATPase [Methanococcus maripaludis C6]
 gi|159886655|gb|ABX01592.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C6]
          Length = 781

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 42/198 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEEN 269

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +    ++           QL  +++ +      +++ A   P S  + 
Sbjct: 270 SPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLLDGLEGRGQVVILAATNRPDSIDMA 329

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQRME 206
           L     RL       I +PD     +++      R + +           +   ++   +
Sbjct: 330 LRR-PGRLDRELT--IGIPDRHARNEILQ--IHTRNMPLQPDYEKNEVIPVLNELIGEFD 384

Query: 207 RS-LVFAEKLVDKMDNLA 223
           RS +    KLV+K  + A
Sbjct: 385 RSKIESIVKLVEKASSEA 402



 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++S +   S
Sbjct: 540 PPKGVLLFGPPGTGKTLLAKAVANESEANFIS 571


>gi|332686848|ref|YP_004456622.1| ATPase [Melissococcus plutonius ATCC 35311]
 gi|332370857|dbj|BAK21813.1| uncharacterized ATPase (AAA family) associated with cysteine
           desulfurase [Melissococcus plutonius ATCC 35311]
          Length = 426

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 80/201 (39%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A          +D   +     +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVVDEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SRL+   + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGKIILIGATTENPYISIN-PAIRSRLQ---IFELKPLTE 152

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIV-------QRMERSLV-FAEKLVDKMDNLAL--- 224
             +++ I+    +     ++ L  Y V         + RS        ++ +  LA+   
Sbjct: 153 QDIKQAIINALKNT----EQGLGEYPVVLEDEAFVHLSRSTNGDLRSALNGL-ELAVKST 207

Query: 225 ----SRGMGITRSLAAEVLKE 241
                + + IT  +  E +++
Sbjct: 208 EKNEEQKIVITLPIIEECIQK 228


>gi|255015227|ref|ZP_05287353.1| recombination factor protein RarA [Bacteroides sp. 2_1_7]
 gi|262381155|ref|ZP_06074293.1| recombination factor protein RarA [Bacteroides sp. 2_1_33B]
 gi|298377584|ref|ZP_06987536.1| ATPase, AAA family [Bacteroides sp. 3_1_19]
 gi|262296332|gb|EEY84262.1| recombination factor protein RarA [Bacteroides sp. 2_1_33B]
 gi|298265603|gb|EFI07264.1| ATPase, AAA family [Bacteroides sp. 3_1_19]
          Length = 423

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT---------RKP 110
              IL GP G GK+ LA I ++K  +     +  S+  K +  ++               
Sbjct: 41  PSFILWGPPGVGKTTLAQIIANKLDAPFYTLSAISSGVKDVREVIEKAKSNRFFNTVSPI 100

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + +++I     +      ++N++ +     L+ A T   S+ V  P L SR     V  +
Sbjct: 101 LFIDEIHRFSKSQQD--SLLNAV-ETGVVTLIGATTENPSFEVIRP-LLSR---CQVYVL 153

Query: 171 SLPDDDFLEKVIVKMFAD 188
              D + L  ++ K  A+
Sbjct: 154 KSLDKNDLLTLLHKAIAE 171


>gi|332983427|ref|YP_004464868.1| IstB domain-containing protein ATP-binding protein [Mahella
           australiensis 50-1 BON]
 gi|332701105|gb|AEE98046.1| IstB domain protein ATP-binding protein [Mahella australiensis 50-1
           BON]
          Length = 228

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 32/146 (21%)

Query: 49  IEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-- 104
                A      +P+   + ++  GP G+GK+ LA   +++  S  +S I  ++  IL  
Sbjct: 64  NAYKIAYEFATRFPN-VEKGLLFTGPVGTGKTHLAAAIANELISKLYSVIFGNVIDILTL 122

Query: 105 --------------------IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLL 141
                                D    ++++D+   +  +     ++ IIN +++ +  ++
Sbjct: 123 VKSTYRRDSELTEAEMIRTFTDNVDILVIDDLGKENATENSTTVIYQIINRLYENERPII 182

Query: 142 MTARTFPVSWGVCLPD----LCSRLK 163
           +T           L +    + SRL 
Sbjct: 183 VTTNFSSAVLRKKLGEKGDAIVSRLA 208


>gi|184155391|ref|YP_001843731.1| recombination factor protein RarA [Lactobacillus fermentum IFO
           3956]
 gi|183226735|dbj|BAG27251.1| helicase [Lactobacillus fermentum IFO 3956]
          Length = 448

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 33/185 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111
             +IL GP G GK+ LA I + K+++                  +  +  +     R  V
Sbjct: 53  PSLILWGPPGVGKTTLAEIIAQKTKAKFITFSAVNSSIKDIKQVMEAATANHQFGERTVV 112

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169
            +++I   +      F       +    +L+  T              L SR     V  
Sbjct: 113 FIDEIHRFNKAQQDAFLPY---VERGEIILIGATTENPSFELNAA---LLSR---CKVFV 163

Query: 170 ISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   D   L K++ +       FAD +I ++  +   I          A   ++ ++   
Sbjct: 164 LRALDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFAN---GDARMALNTLEMAV 220

Query: 224 LSRGM 228
           L+   
Sbjct: 221 LNGQR 225


>gi|325672565|ref|ZP_08152261.1| AAA family ATPase [Rhodococcus equi ATCC 33707]
 gi|325556442|gb|EGD26108.1| AAA family ATPase [Rhodococcus equi ATCC 33707]
          Length = 468

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 73/173 (42%), Gaps = 24/173 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVL--------L 113
           V+L GP G+GK+ LA++ S  +       +  S   K +  ++   R+ +L        +
Sbjct: 82  VLLYGPPGTGKTTLASLISGATGRKFEALSALSAGVKEVRGVIELARRRLLQGEQTVLFI 141

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +    LL+ A T   S+ V  P L SR   + V+++  
Sbjct: 142 DEVHRFSKTQQDALL----AAVENRIVLLVAATTENPSFSVVSP-LLSR---SLVLQLQS 193

Query: 173 PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223
              D +  VI +  AD R +    ++A   ++ + R +   A + +  ++  A
Sbjct: 194 LTSDDIRLVIERARADERGLGGAVEIADDALEHLVRLAAGDARRALTALEAAA 246


>gi|212703753|ref|ZP_03311881.1| hypothetical protein DESPIG_01801 [Desulfovibrio piger ATCC 29098]
 gi|212672721|gb|EEB33204.1| hypothetical protein DESPIG_01801 [Desulfovibrio piger ATCC 29098]
          Length = 453

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 17/171 (9%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------------IWSDKSRSTRFSN 95
           +  A  +    P       +L G  G+GKS L +             I +  +R  +   
Sbjct: 133 LAMARAVALREPG--HSPFLLHGEKGTGKSHLLHHMAAALARQDLRVILAPAARFFQHCP 190

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
           + +    +       + L+DI  L       +L   + +     + +++     P   G 
Sbjct: 191 LEEQTAPLFWQQADALFLDDIQTLGGQPRFQRLLAALLAHRPEKAPVVLALEGGPDVLGT 250

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
             P   +R++     +++ PD +   + + +   +  + + ++    + +R
Sbjct: 251 WEPGPAARVRQLFSAELTPPDMEARMRYLQQCCRENALDLPREHLRLMARR 301


>gi|206895474|ref|YP_002247556.1| AAA ATPase, central region [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738091|gb|ACI17169.1| AAA ATPase, central region [Coprothermobacter proteolyticus DSM
           5265]
          Length = 459

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 28/143 (19%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--DFN 122
           ++L GP G GK+ +A + ++  K+R  RFS +   +  I        +LED ++      
Sbjct: 57  LVLWGPPGVGKTSIAMVIANTTKARFLRFSAVTSGIKEIKE------VLEDAEVQFNMGR 110

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T +F    H  N           +  + +L+ A T   S+ +  P L SR   + VV +
Sbjct: 111 RTVIFVDEIHHFNKTQQDAFLPYVEKGAVVLICATTENPSFEIISP-LLSR---SKVVVL 166

Query: 171 SLPDDDFLEKVIVKMFAD--RQI 191
              + + ++ ++ +  AD  R +
Sbjct: 167 EPLEAEDIKTILYRALADKERGL 189


>gi|301311175|ref|ZP_07217103.1| ATPase, AAA family [Bacteroides sp. 20_3]
 gi|300830749|gb|EFK61391.1| ATPase, AAA family [Bacteroides sp. 20_3]
          Length = 422

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT---------RKP 110
              IL GP G GK+ LA I ++K  +     +  S+  K +  ++               
Sbjct: 40  PSFILWGPPGVGKTTLAQIIANKLDAPFYTLSAISSGVKDVREVIEKAKSNRFFNTVSPI 99

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + +++I     +      ++N++ +     L+ A T   S+ V  P L SR     V  +
Sbjct: 100 LFIDEIHRFSKSQQD--SLLNAV-ETGVVTLIGATTENPSFEVIRP-LLSR---CQVYVL 152

Query: 171 SLPDDDFLEKVIVKMFAD 188
              D + L  ++ K  A+
Sbjct: 153 KSLDKNDLLTLLHKAIAE 170


>gi|255284526|ref|ZP_05349081.1| putative transcriptional regulator [Bryantella formatexigens DSM
           14469]
 gi|255264939|gb|EET58144.1| putative transcriptional regulator [Bryantella formatexigens DSM
           14469]
          Length = 232

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 16/142 (11%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLDFN 122
           V  L G +G+GK+ L      + +   +S      + +        + V+++D+  +   
Sbjct: 40  VAYLYGVTGTGKTRLVREVFARKQYEYYSARETQPEEVGVKPDGQERIVVVDDLYTVTLQ 99

Query: 123 D-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
           +       LF       Q    L++ +R     W + L     R++    V+I   D   
Sbjct: 100 EIKECWAALFR--KLAGQEGVRLVLVSRAPVPGWLIPL-----RVEY-RFVEIGEKDLCL 151

Query: 178 LEKVIVKMFADRQIFIDKKLAA 199
             +          I ++ + A 
Sbjct: 152 TRRGQDAYLELSGIRLEPETAD 173


>gi|315658102|ref|ZP_07910974.1| AAA family ATPase [Staphylococcus lugdunensis M23590]
 gi|315496431|gb|EFU84754.1| AAA family ATPase [Staphylococcus lugdunensis M23590]
          Length = 422

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 39/200 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  +          +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTAYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +++ ++  +++   D  R +      ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 NEEDIKVALMRAIEDDSRGLASYHPHIDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 -----GMGITRSLAAEVLKE 241
                   +T + A + L++
Sbjct: 209 DEDNGERHVTLTDAQDCLQK 228


>gi|31793742|ref|NP_856235.1| recombination factor protein RarA [Mycobacterium bovis AF2122/97]
 gi|121638444|ref|YP_978668.1| recombination factor protein RarA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215427955|ref|ZP_03425874.1| recombination factor protein RarA [Mycobacterium tuberculosis T92]
 gi|215431517|ref|ZP_03429436.1| recombination factor protein RarA [Mycobacterium tuberculosis
           EAS054]
 gi|219558563|ref|ZP_03537639.1| recombination factor protein RarA [Mycobacterium tuberculosis T17]
 gi|224990938|ref|YP_002645625.1| recombination factor protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260187574|ref|ZP_05765048.1| recombination factor protein RarA [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201686|ref|ZP_05769177.1| recombination factor protein RarA [Mycobacterium tuberculosis T46]
 gi|260205881|ref|ZP_05773372.1| recombination factor protein RarA [Mycobacterium tuberculosis K85]
 gi|289444095|ref|ZP_06433839.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T46]
 gi|289448208|ref|ZP_06437952.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289570728|ref|ZP_06450955.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289575267|ref|ZP_06455494.1| recombination factor protein RarA [Mycobacterium tuberculosis K85]
 gi|289751178|ref|ZP_06510556.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T92]
 gi|289754677|ref|ZP_06514055.1| recombination factor protein RarA [Mycobacterium tuberculosis
           EAS054]
 gi|31619336|emb|CAD94774.1| CONSERVED HYPOTHETICAL ALANINE LEUCINE VALINE RICH PROTEIN
           [Mycobacterium bovis AF2122/97]
 gi|121494092|emb|CAL72570.1| Conserved hypothetical alanine leucine valine rich protein
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224774051|dbj|BAH26857.1| recombination factor protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289417014|gb|EFD14254.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T46]
 gi|289421166|gb|EFD18367.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289539698|gb|EFD44276.1| recombination factor protein RarA [Mycobacterium tuberculosis K85]
 gi|289544482|gb|EFD48130.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289691765|gb|EFD59194.1| conserved alanine, leucine valine rich protein [Mycobacterium
           tuberculosis T92]
 gi|289695264|gb|EFD62693.1| recombination factor protein RarA [Mycobacterium tuberculosis
           EAS054]
          Length = 452

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 27/156 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
           VIL GP GSGK+ LA + S  +          S   K + +++ ++RK +L        +
Sbjct: 68  VILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFI 127

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     S  ++   LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 128 DEVHRFSKTQQDALL----SAVEHRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 179

Query: 173 PDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQ 203
              +    V+ +   D     R + +  +    +VQ
Sbjct: 180 LTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQ 215


>gi|332799117|ref|YP_004460616.1| AAA ATPase central domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332696852|gb|AEE91309.1| AAA ATPase central domain protein [Tepidanaerobacter sp. Re1]
          Length = 445

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 34/182 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G GK+ LA I ++K+ +                  + ++ +  L   R  + +
Sbjct: 59  MILWGPPGVGKTTLAKIIAEKTHAKFENFSAVLSGIKEIREVMKQAEERRLYGQRTLLFI 118

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++I   + +    F       +    +L+  T              L SR   + V  ++
Sbjct: 119 DEIHRFNKSQQDAFLPF---VEKGDIILIGATTENPSFELNSA---LLSR---SKVFTLN 169

Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
               + +  ++ +   D  R +      I  +    +      S   A   ++ ++  AL
Sbjct: 170 PLKPENIILLLKRAIKDKERGLGKMNVDISDETLEKLAVY---SNGDARVALNTLELSAL 226

Query: 225 SR 226
             
Sbjct: 227 IA 228


>gi|218710024|ref|YP_002417645.1| recombination factor protein RarA [Vibrio splendidus LGP32]
 gi|218323043|emb|CAV19220.1| Hypothetical protein VS_2044 [Vibrio splendidus LGP32]
          Length = 451

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 44/202 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + ++ + +   R S +   +  I I   K       +      T
Sbjct: 56  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIEKA----RENKQAGRRT 111

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V K+
Sbjct: 112 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 165

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL------ 224
           +  + + +  VI +   D+Q  +    A +    ++R      +LV+    ++L      
Sbjct: 166 TSLNTEDISLVIRQAIEDKQRGLGDVTADFAGNVLDR----LAELVNGDARMSLNYLELL 221

Query: 225 --------SRGMGITRSLAAEV 238
                        IT  L AEV
Sbjct: 222 YDMAEDNDKGEKAITLQLLAEV 243


>gi|303252682|ref|ZP_07338845.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648650|gb|EFL78843.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 446

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 52  MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 161

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  + +V+     D  R +     +I+  +   +   +     FA   ++ M ++A
Sbjct: 162 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 221

Query: 224 LS--RGMGITRSLAAEVLKETQQ 244
               +G  + ++L AEVL E Q 
Sbjct: 222 EISPQGKRLNKALLAEVLGERQA 244


>gi|149204649|ref|ZP_01881614.1| ATP-dependent Zn protease [Roseovarius sp. TM1035]
 gi|149141908|gb|EDM29958.1| ATP-dependent Zn protease [Roseovarius sp. TM1035]
          Length = 742

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 77/234 (32%), Gaps = 67/234 (28%)

Query: 56  IDSWP----SWPS--RVVILVGPSGSGKSCLANIWSDKSRSTRFS--------------- 94
           +++W     +W       +L GP G+GK+ LAN ++  +     S               
Sbjct: 335 LNAWRTGALAWAEVTSSAVLYGPPGTGKTTLANAFAGSAGIPIISTSYADCQKHGHQGDM 394

Query: 95  --NIAKSLDSILIDTRKPVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSS 139
              +  +  +        + ++++D     DT              L   IN     +  
Sbjct: 395 LRALDDAFATAKEAAPAVLFIDELDSFTQRDTPDYNGGYMRGVVNGLLEQINRAKDVEGL 454

Query: 140 LLMTART-----FPV---------SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
           +L+ A        P             V LPD    L+A    K+    +  +   +  +
Sbjct: 455 VLLGATNELEAVDPAVIRSGRFDLKLHVPLPDKKG-LEAILTAKLGS--ETAIRLDLANL 511

Query: 186 FADRQIFIDKKLAAYIVQ------RMERSL-------VFAEKLVDKMDNLALSR 226
            A R +     +A  IV+      R +R+          A+++V K+D   L R
Sbjct: 512 AA-RLLGQSGAVAEAIVRDALGRAREDRTTIRQNHLESAADQIVPKLDQEILRR 564


>gi|299783213|gb|ADJ41211.1| Recombination ATPase [Lactobacillus fermentum CECT 5716]
          Length = 448

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 33/185 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111
             +IL GP G GK+ LA I + K+++                  +  +  +     R  V
Sbjct: 53  PSLILWGPPGVGKTTLAEIIAQKTKAKFITFSAVNSSIKDIKQVMEAATANHQFGERTVV 112

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169
            +++I   +      F       +    +L+  T              L SR     V  
Sbjct: 113 FIDEIHRFNKAQQDAFLPY---VERGEIILIGATTENPSFELNAA---LLSR---CKVFV 163

Query: 170 ISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   D   L K++ +       FAD +I ++  +   I          A   ++ ++   
Sbjct: 164 LRALDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFAN---GDARMALNTLEMAV 220

Query: 224 LSRGM 228
           L+   
Sbjct: 221 LNGQR 225


>gi|134046379|ref|YP_001097864.1| replication factor C large subunit [Methanococcus maripaludis C5]
 gi|166977384|sp|A4FZL6|RFCL_METM5 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|132664004|gb|ABO35650.1| replication factor C large subunit [Methanococcus maripaludis C5]
          Length = 484

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 44/221 (19%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNI 96
           V    +    LI    +W            ++L GP GSGK+ LA+  +           
Sbjct: 16  VAGHNKTKQALI----NWIESFVNGQKQKPILLAGPPGSGKTTLAHAIAKDYAFDVIELN 71

Query: 97  A---------------KSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSS 139
           A                +    L   R  ++L+++D L  ND    +  II  +   ++ 
Sbjct: 72  ASDKRNKDVIAQVVGTAATSKSLTGKRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENP 131

Query: 140 LLMTART--FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           +++TA     P    +             ++ +     + +  V+ K+       ID+K+
Sbjct: 132 VILTANDVYKPALMTLR--------NNVNLINVGSVHTNSIPPVLRKIALKEGFEIDEKV 183

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
              I      S       ++  D  +L+ G  +    A E+
Sbjct: 184 IKTIASH---SGGDLRAAIN--DLQSLATGGSLEVEDAKEL 219


>gi|91773970|ref|YP_566662.1| AAA family ATPase, CDC48 subfamily protein [Methanococcoides
           burtonii DSM 6242]
 gi|91712985|gb|ABE52912.1| VCP-like ATPase, AAA family [Methanococcoides burtonii DSM 6242]
          Length = 738

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 73/208 (35%), Gaps = 49/208 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + VIL GP G+GK+ +A   +++SR+                     + K  +    +
Sbjct: 221 PPKGVILYGPPGTGKTLIAKAVANESRANFLYVAGPEIMGRFYGESEERLRKIFEEAAEN 280

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A          
Sbjct: 281 APSIIFIDEIDSIAPKRENVTGEVERRVVAQLLTLMDGMEERGQIVVIAAT---NRLDSI 337

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL--------------AAY 200
            P L    +    ++I +PD D   +V+      R + + + +              A  
Sbjct: 338 DPALRRPGRFDREIEIGVPDSDDRLEVLQ--IHSRGMPLAEDVDLEHLATYTQGFVGADL 395

Query: 201 IVQRMERSLVFAEKLV--DKMDNLALSR 226
           +    E S+    +++    +D   +S+
Sbjct: 396 LSLVQEASMRALRRILPEINLDEEEISQ 423



 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L GP G+GK+ +A   ++++ +   S
Sbjct: 498 ILLYGPPGTGKTLIAQAVANEANANFIS 525


>gi|51892299|ref|YP_074990.1| Holliday junction DNA helicase RuvB [Symbiobacterium thermophilum
           IAM 14863]
 gi|68715427|sp|Q67Q97|RUVB_SYMTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|51855988|dbj|BAD40146.1| Holliday junction DNA helicase RuvB [Symbiobacterium thermophilum
           IAM 14863]
          Length = 347

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 76/197 (38%), Gaps = 27/197 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA+I + +           ++            L + D+L  +
Sbjct: 53  PLDHVLLYGPPGLGKTTLAHIIAHEMGVNLRITSGPAISHQGDLAAILTQLSEGDVLFVD 112

Query: 123 DTQLFHIINSIHQ-------YDSSL-LMTARTFPVS-WGVCLPD------------LCS- 160
           +    H +N + +        D +L ++  +        + LP             L S 
Sbjct: 113 EI---HRLNRLVEETLYPAMEDFALDIILGKGPAARTLRLDLPRFTLIGATTRYGALTSP 169

Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            R +   V+++    ++ L +++++      + +D   A  I +R   +   A +L+ ++
Sbjct: 170 LRDRFGVVLQLQFYSEEELTRILMRAARILNVPLDPGGAREIARRSRGTPRVANRLLRRL 229

Query: 220 -DNLALSRGMGITRSLA 235
            D   +     ITR +A
Sbjct: 230 RDYAQVRADGVITRDVA 246


>gi|147669159|ref|YP_001213977.1| IstB ATP binding domain-containing protein [Dehalococcoides sp.
           BAV1]
 gi|146270107|gb|ABQ17099.1| replicative DNA helicase loader DnaI [Dehalococcoides sp. BAV1]
          Length = 469

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 35/156 (22%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--- 106
           E A+    +   W    ++  GPSG+GK+ LA   +++  ST    + K    ++ D   
Sbjct: 114 EAALDFASNPAGW----LVFTGPSGAGKTHLAAAIANRRLSTGQPVLYKRASELIDDLKK 169

Query: 107 ------------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145
                                 ++++D+ +   ++    +L  ++      +   ++T  
Sbjct: 170 SFEPDSDAGYSQSFDILKNAPLLVIDDLTVQSGSEWSKEKLDQLLTYRFSQELPTIITLS 229

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKI----SLPDDDF 177
           T         P + SRL   ++ KI      P+D  
Sbjct: 230 TPINELD---PRIQSRLLDKSISKIYTVAPNPEDSL 262



 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 30/151 (19%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------------------WSDKSRST 91
            A  L   +   P   ++  G +G GK+ LA+                    + D  RST
Sbjct: 298 AAYNLALDFSRNPESWLVFQGETGCGKTHLASAIVNERYRQGKPAMFVVVPEFLDHLRST 357

Query: 92  RFSNIAKSLDSILIDTRKP--VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTART 146
                  S D +    +    ++L+D        +   +L+ +IN  +    + ++T R 
Sbjct: 358 FSPESKTSYDQMFDAVKNAKLLVLDDFGEQSSTPWAQEKLYQVINYRYNRRLATVITTRC 417

Query: 147 FPVSWGVCLPDLCSRL---KAATVVKISLPD 174
                 V +    SR    + + V  I+ P+
Sbjct: 418 QLSEIEVAI---SSRFVDPQISMVFNITAPN 445


>gi|146276369|ref|YP_001166528.1| transposase [Rhodobacter sphaeroides ATCC 17025]
 gi|146276989|ref|YP_001167148.1| transposase [Rhodobacter sphaeroides ATCC 17025]
 gi|146277868|ref|YP_001168027.1| transposase [Rhodobacter sphaeroides ATCC 17025]
 gi|146279516|ref|YP_001169674.1| transposase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554610|gb|ABP69223.1| IstB domain protein ATP-binding protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555230|gb|ABP69843.1| IstB domain protein ATP-binding protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556109|gb|ABP70722.1| IstB domain protein ATP-binding protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145557757|gb|ABP72369.1| hypothetical protein Rsph17025_3496 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 270

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTR 108
           +++ GP G GKS LA           W        D  +  + +    +L+  +  +D  
Sbjct: 109 LLVFGPPGGGKSHLAAAIGLGLIENGWRVFFTRTTDLVQRLQVARRELALEQAIAKLDKY 168

Query: 109 KPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             ++L+D+  +  +      LF +I S      S+L+TA      W    PD
Sbjct: 169 HLLILDDLAYVTKDQAETSALFELI-SARYERRSILITANQPFGEWNRIFPD 219


>gi|260662096|ref|ZP_05862992.1| helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260553479|gb|EEX26371.1| helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 448

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 33/185 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111
             +IL GP G GK+ LA I + K+++                  +  +  +     R  V
Sbjct: 53  PSLILWGPPGVGKTTLAEIIAQKTKAKFITFSAVNSSIKDIKQVMEAATANHQFGERTVV 112

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169
            +++I   +      F       +    +L+  T              L SR     V  
Sbjct: 113 FIDEIHRFNKAQQDAFLPY---VERGEIILIGATTENPSFELNAA---LLSR---CKVFV 163

Query: 170 ISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   D   L K++ +       FAD +I ++  +   I          A   ++ ++   
Sbjct: 164 LRALDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFAN---GDARMALNTLEMAV 220

Query: 224 LSRGM 228
           L+   
Sbjct: 221 LNGQR 225


>gi|302770400|ref|XP_002968619.1| hypothetical protein SELMODRAFT_61702 [Selaginella moellendorffii]
 gi|300164263|gb|EFJ30873.1| hypothetical protein SELMODRAFT_61702 [Selaginella moellendorffii]
          Length = 498

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 36/156 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKS---------------RSTRFSNIAKSLDSILIDTRKPV 111
           ++L GP G GK+ LA   ++++                   FS I      +    R  +
Sbjct: 37  ILLHGPPGCGKTLLAYAIANEAEVPIRKVAPAELSSGAGKLFSTIRSIFADVATLARCVL 96

Query: 112 LLEDIDLLDFNDTQ-------------------LFHIINSIHQYDSSLLMTARTFPVSWG 152
           LL++ID +                         L H+ ++  Q    +++   T      
Sbjct: 97  LLDEIDAVAMKRDAARKDVDSRSLTQLMTCIDGLNHLWDASRQCAGHVIIVGTT--NRLE 154

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              P L    +    + ++ PD+   ++++  +  D
Sbjct: 155 DIDPALRRSGRLTIEIALNAPDEQARKQILSVLTRD 190


>gi|302788184|ref|XP_002975861.1| hypothetical protein SELMODRAFT_51668 [Selaginella moellendorffii]
 gi|300156137|gb|EFJ22766.1| hypothetical protein SELMODRAFT_51668 [Selaginella moellendorffii]
          Length = 498

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 36/156 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKS---------------RSTRFSNIAKSLDSILIDTRKPV 111
           ++L GP G GK+ LA   ++++                   FS I      +    R  +
Sbjct: 37  ILLHGPPGCGKTLLAYAIANEAEVPIRKVAPAELSSGAGKLFSTIRSIFADVATLARCVL 96

Query: 112 LLEDIDLLDFNDTQ-------------------LFHIINSIHQYDSSLLMTARTFPVSWG 152
           LL++ID +                         L H+ ++  Q    +++   T      
Sbjct: 97  LLDEIDAVAMKRDAARKDVDSRSLTQLMTCIDGLNHLWDASRQCAGHVIIVGTT--NRLE 154

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
              P L    +    + ++ PD+   ++++  +  D
Sbjct: 155 DIDPALRRSGRLTIEIALNAPDEQARKQMLSVLTRD 190


>gi|296218057|ref|XP_002755280.1| PREDICTED: 26S protease regulatory subunit 6A [Callithrix jacchus]
          Length = 447

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 227 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 286

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 287 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 346

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 347 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 400

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 401 GAQCKAVCVEAGMIALRRGAT 421


>gi|146304983|ref|YP_001192299.1| AAA family ATPase [Metallosphaera sedula DSM 5348]
 gi|145703233|gb|ABP96375.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348]
          Length = 760

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 59/226 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G GK+ LA   +++  +                     + +  D    +
Sbjct: 217 PPKGVLLYGPPGVGKTLLARALANEIGAYFVTINGPEIMSKFYGESEQRLREIFDDADKN 276

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP--VSWG 152
               + +++ID +                 QL  +++ I      +++ A   P  V   
Sbjct: 277 APSIIFIDEIDAIAPKREEVTGEVEKRVVSQLLTLMDGIKGRGRIVVIGATNRPDAVDQA 336

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL--------------- 197
           +  P    R      ++I  PD    ++++      R + +   +               
Sbjct: 337 LRRP---GRFD--REIEIRPPDTKARKEILQVH--TRNMPLADDVNLDVIAEMTNGYTGA 389

Query: 198 -AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             A + +  E ++    + ++  D   L         L+ EVLKE 
Sbjct: 390 DIAALAK--EAAMHALRRFINTGDRKKLLEQER----LSPEVLKEL 429



 Score = 37.8 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 494 PPKGVLLFGPPGTGKTMLAKAVATESGANFIA 525


>gi|124804380|ref|XP_001347985.1| 26S protease subunit regulatory subunit 6a, putative [Plasmodium
           falciparum 3D7]
 gi|23496239|gb|AAN35898.1|AE014840_46 26S protease subunit regulatory subunit 6a, putative [Plasmodium
           falciparum 3D7]
          Length = 439

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 63/167 (37%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++ +T        L  + I     ++          
Sbjct: 219 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 278

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D+  ++ A   P + 
Sbjct: 279 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTL 338

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     +++  P+++   +++      R++ + K +
Sbjct: 339 DPAL--LRSGRLD--RKIELPHPNEESRARILQ--IHSRKMNVHKDV 379


>gi|18129333|emb|CAC83490.1| DnaA protein [Wolbachia endosymbiont of Brugia malayi]
          Length = 135

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SRL    V  I+    +    ++        +++ + +  ++ + +
Sbjct: 1   RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVPQDVLEFLARNI 60

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             ++   E  ++K+ + +L  G  +T   A+E L +  + +
Sbjct: 61  RSNIRELEGALNKVAHTSLI-GRSMTVESASETLMDLLRSN 100


>gi|253998904|ref|YP_003050967.1| recombination factor protein RarA [Methylovorus sp. SIP3-4]
 gi|253985583|gb|ACT50440.1| AAA ATPase central domain protein [Methylovorus sp. SIP3-4]
          Length = 440

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 69/186 (37%), Gaps = 23/186 (12%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSIL 104
           ++ S     +IL GP G GK+ LA + ++ + +                  + ++  ++ 
Sbjct: 42  AFQSGKLPSMILWGPPGVGKTTLARLIANTADAEFIPLSAVLSGIKDIREAVERAQHTLQ 101

Query: 105 IDTRKPVL-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
              R+ +L ++++   +      F       +      + A T   S+ V    L SR  
Sbjct: 102 QSGRRTILFVDEVHRFNKGQQDAFLPF---VESGLITFIGATTENPSFEVNSA-LLSR-- 155

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V  +    +  L +++ +   +    + +  ++   ++   +         V+ + N
Sbjct: 156 -ARVFVLQALSEADLAELLERARVNMSPEMALSDEVKEQVLAYADGDARRLLNFVEGLFN 214

Query: 222 LALSRG 227
            AL+ G
Sbjct: 215 AALTSG 220


>gi|158341181|ref|YP_001522456.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158311422|gb|ABW33033.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 272

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 36/146 (24%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81
           F F  C  +              +  + + P W       +IL GPSG GK+ LA     
Sbjct: 86  FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 134

Query: 82  ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125
                      ++  +   +       L        +D    ++L+D+     ++ +   
Sbjct: 135 KMLEFGKRVKFFAANALVQQLQQAKLQLQLHPMLKKLDRYDLLILDDLGYCKKSEAETSV 194

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151
           LF +I +      SLL+TA      W
Sbjct: 195 LFELI-AHRYERKSLLITANQPFSQW 219


>gi|329850245|ref|ZP_08265090.1| ATPase family associated with various cellular activities AAA
           family protein [Asticcacaulis biprosthecum C19]
 gi|328840560|gb|EGF90131.1| ATPase family associated with various cellular activities AAA
           family protein [Asticcacaulis biprosthecum C19]
          Length = 448

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 34/193 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122
             +IL GP G GK+ +A + ++ +    F  I+     +    +     E          
Sbjct: 62  PSLILWGPPGVGKTTIARLLAEAAG-YEFQQISAVFSGVADLKK---AFEQAQQRHQMGQ 117

Query: 123 DTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVV 168
            T LF    H  N           +     L+  T              L SR   + V 
Sbjct: 118 RTVLFVDEIHRFNRAQQDSFLPFVEAGVVTLIGATTENPSFELNGA---LLSR---SQVF 171

Query: 169 KISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            +   DD  L+++I K      R++ ++      +    +    +   L++ +D++    
Sbjct: 172 VLKRLDDAALDQIIAKAEDHIGRKLPLEADAYETLKLLSDGDGRYILSLIEALDHMGFES 231

Query: 227 GMGITRSLAAEVL 239
                  L++E L
Sbjct: 232 ------PLSSEAL 238


>gi|330446443|ref|ZP_08310095.1| recombination factor [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490634|dbj|GAA04592.1| recombination factor [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 446

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     K       + +    T
Sbjct: 52  MILWGPPGTGKTTLAEVAAHYANAEVERVSAVTSGIKDIRAAIGKA----RDNKMAGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V K+
Sbjct: 108 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 161

Query: 171 SLPDDDFLEKVIVKMFAD--RQIF---------IDKKLAAYIVQRMERSLVFAEKLVDKM 219
              +D  + +V+ +   D  R +          I +KLA ++      SL + E+L+D M
Sbjct: 162 KSLEDSEILQVLEQALTDKERGVTETNLHFVDDIKEKLAEFVRGDARMSLNYLEQLID-M 220

Query: 220 DNLALSRGMGITRSLAAEV 238
                     IT  L AEV
Sbjct: 221 AEEDDKGVKQITVELLAEV 239


>gi|262363790|gb|ACY60511.1| chromosomal replication initiator protein [Yersinia pestis D106004]
          Length = 211

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 23  NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77
           N   Q  L +        + D+ +   + + A          P      + L G +G GK
Sbjct: 114 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 173

Query: 78  SCLAN-----IWSDKSRSTRF 93
           + L +     I + K+ +T  
Sbjct: 174 THLLHAVGNGIMARKANATVV 194


>gi|118086471|ref|XP_001232269.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           1 [Gallus gallus]
          Length = 537

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 16/88 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  S   +      + D+     N+ 
Sbjct: 158 PSLILWGPPGCGKTTLAHIIANSSKKKGMRFVTLSATSAKTND-----VRDVISQAQNEK 212

Query: 125 QLF-----------HIINSIHQYDSSLL 141
           +LF           H  N   Q +++LL
Sbjct: 213 RLFKRKTILFIDEIHRFNKSQQVNAALL 240


>gi|323964459|gb|EGB59936.1| IstB ATP binding protein [Escherichia coli M863]
          Length = 233

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 25/145 (17%)

Query: 32  FPRCLGISRDDLL-VHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKS 88
            P    +S  D   V        R +     W      V+L G SG GKS LA    D  
Sbjct: 66  LPVAKTLSEYDFSQVPELNGAQFRQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGV 125

Query: 89  RSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFNDTQ---LF 127
               +     S   +L + RK                   ++++D+  +  +  +   LF
Sbjct: 126 VGQGYRARFYSAGELLQELRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLF 185

Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152
            +I +      SL++T+      WG
Sbjct: 186 ELI-AHRDERGSLVITSNHPFSMWG 209


>gi|295092387|emb|CBK78494.1| Recombination protein MgsA [Clostridium cf. saccharolyticum K10]
          Length = 462

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 67/184 (36%), Gaps = 29/184 (15%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTR 108
            LI+         +I  GP G GK+ LA+I ++++ +   +  A +     +  ++    
Sbjct: 43  NLIERDQ---VSSMIFWGPPGVGKTTLASIIANRTNAGFINFSAVTSGIKEIREVMAKAE 99

Query: 109 KP--------VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           +         V +++I   +      F       +  S +L+ A T   S+ +    L S
Sbjct: 100 EARHRGMKTVVFVDEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEINSA-LLS 155

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMF-ADRQ-----IFIDKKLAAYIVQRMERSLVFAEK 214
           R     V  +     + L  ++     + R      + I+++L   I +        A  
Sbjct: 156 R---CRVFVLKELSREELTALLKHALTSSRGYGYLKVEIEEELLDMIARFAGGDARTALN 212

Query: 215 LVDK 218
           +++ 
Sbjct: 213 VLEM 216


>gi|17865538|sp|O88685|PRS6A_MOUSE RecName: Full=26S protease regulatory subunit 6A; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT5; AltName:
           Full=Proteasome 26S subunit ATPase 3; AltName:
           Full=Tat-binding protein 1; Short=TBP-1
 gi|3510277|dbj|BAA32559.1| Tat binding protein-1 [Mus musculus]
 gi|10697242|dbj|BAB16347.1| proteasomal ATPase [Mus musculus]
          Length = 442

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 396 GAQSKAVCVEAGMIALRRGAT 416


>gi|145224348|ref|YP_001135026.1| recombination factor protein RarA [Mycobacterium gilvum PYR-GCK]
 gi|145216834|gb|ABP46238.1| Recombination protein MgsA [Mycobacterium gilvum PYR-GCK]
          Length = 446

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 30/175 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
           VIL GP G+GK+ LA++ S  +          +   K + +++   R+  +        +
Sbjct: 63  VILYGPPGTGKTTLASMISQATGRRFEALSALAAGVKEVRAVIDVARQAAVRGEQTVLFI 122

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 123 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 174

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
                +  VI +   D R +     +       +V     S   A + +  ++  
Sbjct: 175 LTPADVTTVIRRAITDERGLGGRVTVSDDAIEQLVL---LSAGDARRALTALEVA 226


>gi|62896529|dbj|BAD96205.1| proteasome 26S ATPase subunit 3 variant [Homo sapiens]
          Length = 424

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 204 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 263

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 264 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 323

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++   P+++   +++      R++ +   +    + R      
Sbjct: 324 DPAL--LRSGRLD--RKIEFPTPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 377

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 378 GAQCKAVCVEAGMIALRRGAT 398


>gi|84999438|ref|XP_954440.1| 226S proteasome regulatory particle [Theileria annulata]
 gi|65305438|emb|CAI73763.1| 226S proteasome regulatory particle, putative [Theileria annulata]
          Length = 419

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 74/202 (36%), Gaps = 40/202 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + +++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 199 PPKGILMHGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 258

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 +++ID +                  +  ++N +      D   ++ A   P + 
Sbjct: 259 APTIIFIDEIDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDKVKVIAATNRPYTL 318

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSL 209
              L  L S RL     +++  P+++    ++      R++ + K    Y+ + R   + 
Sbjct: 319 DPAL--LRSGRLD--RKIELPHPNEEARAHILQ--IHSRKMNVHKDT-NYMELSRSTENF 371

Query: 210 VFAEKLVDKMDNLALSRGMGIT 231
             A+     ++   ++   G T
Sbjct: 372 NGAQLKAVCIEAGMVALRRGAT 393


>gi|241761401|ref|ZP_04759489.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241374308|gb|EER63805.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 449

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 88/255 (34%), Gaps = 38/255 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSR 65
               + +K   P+N+      +          D++    V        R++    +    
Sbjct: 11  LVFTENEKQPLPENRP----LADILRPK-HLSDVIGQAHVTGENGIIGRMV---AAGRLS 62

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            +IL GP G+GK+ +A + ++     RF  ++     +    +  +  E         T 
Sbjct: 63  SLILWGPPGTGKTSIAQLLAESVG-IRFEMVSAIFSGVADLKKIFLKAEH-HRQQGRQTL 120

Query: 126 LF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N           +  + +L+  T      +       L SR   A VV ++
Sbjct: 121 LFIDEIHRFNKGQQDSFLPYIENGTFVLVGATTENPSFALNAA---LLSR---AQVVTLN 174

Query: 172 LPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
             D++ L  ++ +        + +D+     ++   +    F     + +  LA++    
Sbjct: 175 RLDEEALGLLLERAETVSGQLLPVDEDARKALIASADGDGRFLLNQAEIL--LAMNLTKS 232

Query: 230 ITRSLAAEVLKETQQ 244
           ++    A++L++   
Sbjct: 233 LSVPELAQILQKRMA 247


>gi|23015800|ref|ZP_00055567.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 430

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 26/144 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDT 124
           VIL GP G GK+ +A + ++K     F  ++     +    +   + +  +        T
Sbjct: 51  VILWGPPGCGKTTIARLLAEKVG-LYFEPLSAVFSGVADLRK---VFDAAEKRKQTGRST 106

Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q          ++++   T              L SR     V+ +
Sbjct: 107 LLFVDEIHRFNRAQQDGFLPYVENGTVVLVGATTENPSFELNGA---LLSR---CQVLVL 160

Query: 171 SLPDDDFLEKVIVKMFADRQIFID 194
              DD  LE ++VK  AD    + 
Sbjct: 161 HRLDDGALEDLLVKAEADLGRALP 184


>gi|289550607|ref|YP_003471511.1| ATPase of helicase subunit of the Holliday junction resolvase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180139|gb|ADC87384.1| ATPase of helicase subunit of the Holliday junction resolvase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 422

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 39/200 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  +          +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTAYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +++ ++  +++   D  R +      ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 NEEDIKVALMRAIEDDSRGLASYHPHIDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 -----GMGITRSLAAEVLKE 241
                   +T + A + L++
Sbjct: 209 DEDNGERHVTLTDAQDCLQK 228


>gi|284161883|ref|YP_003400506.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
 gi|284011880|gb|ADB57833.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 499

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 74/229 (32%), Gaps = 45/229 (19%)

Query: 49  IEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCLA----------------------NIWS 85
           +E+ +     W    P + ++L GP G GK+ LA                       I  
Sbjct: 22  LERVIAWAKRWQEGIPQKPLLLGGPPGVGKTSLALALANTFGWEVVELNASDQRSWQIIR 81

Query: 86  DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLD-----FNDTQLFHIINSIHQYD 137
                  FS    S    L         +LL+++D +        ++ L  +     +  
Sbjct: 82  RIVGEAAFSETISSEGEFLSSESGRLKLILLDEVDNISKKEDFGGESALIKL--LKRKPR 139

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             +++TA   P      L DL         V+      D + KV+ ++ A   I  D+  
Sbjct: 140 QPIILTA-NDPYKLSKELRDL------CEFVQFKRLRTDQIVKVLERICASEGIKADRNA 192

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              I Q     L  A       D  A++ G    R+    V K  Q+ D
Sbjct: 193 LRLIAQNAGGDLRAAIN-----DLQAIAEGRREIRAEDVVVSKRMQETD 236


>gi|116629635|ref|YP_814807.1| recombination factor protein RarA [Lactobacillus gasseri ATCC
           33323]
 gi|116095217|gb|ABJ60369.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus gasseri ATCC 33323]
          Length = 429

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 26/168 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117
           ++L GP G+GK+ LA I + +      +    S+D+    T+           +L+++I 
Sbjct: 47  LLLWGPPGTGKTSLAQIIAREFD-YPLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIH 105

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            +               +    LL+ A T      +  P + SR     + +     D+ 
Sbjct: 106 RMTTTLQDFLLPY---LENGRILLIGATTENPIMSIV-PAVRSR---CQIFEFKALSDED 158

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLAL 224
           +E+V+++           ++  +  + ++R  V    +    D  +AL
Sbjct: 159 IEQVLIRALK--------EVFHFKDENIDRKAVKIIAISADGDLRVAL 198


>gi|320100774|ref|YP_004176366.1| replication factor C large subunit [Desulfurococcus mucosus DSM
           2162]
 gi|319753126|gb|ADV64884.1| replication factor C large subunit [Desulfurococcus mucosus DSM
           2162]
          Length = 425

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 39/210 (18%)

Query: 53  VRLIDSWPSW-PSRVV-ILVGPSGSGKSCLANIWSDKSRSTRFSNIA------------- 97
           +  ++SW    P +   +L GP G GK+ L    +       F   A             
Sbjct: 31  IAWLESWEKGVPGKKAALLHGPPGCGKTSLVEAVARSKGYQLFEMNASDARRKEDIDRIV 90

Query: 98  --KSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
              S    L  +RK +LL+++D +D   +   +  ++  I    + ++MTA         
Sbjct: 91  KLASRSGALTGSRKIILLDEVDGMDPRADAGGIEALVEVIKATANPIIMTANNPYSQALR 150

Query: 154 CLPDLCS-----RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
            L +L       RL  + VVK           V+ K+    ++F + +    I +R E  
Sbjct: 151 PLRELSEVIGFKRLSESVVVK-----------VLKKICGAEKLFCEDEALREIARRSEGD 199

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           L  A   ++ +    LS G  +T +   E+
Sbjct: 200 LRSAINDLEAL--AGLSGG--VTVNAVKEL 225


>gi|254579010|ref|XP_002495491.1| ZYRO0B12606p [Zygosaccharomyces rouxii]
 gi|238938381|emb|CAR26558.1| ZYRO0B12606p [Zygosaccharomyces rouxii]
          Length = 777

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 58/155 (37%), Gaps = 32/155 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P R ++L GP G+GK+ L    ++ + +   +    S+ S  +   +             
Sbjct: 272 PPRGILLHGPPGTGKTMLLRCVANTTDAHILTINGPSIVSKYLGETEATLREIFDEAKLY 331

Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID +  N                L  +++ +      +++ A   P +   
Sbjct: 332 QPSIIFIDEIDSIAPNRASDDSGEVESRVVATLLTLMDGMGAAGRLVVVAATNRPNNID- 390

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             P L    +    V+I++PD +    +++K F  
Sbjct: 391 --PALRRPGRFDQEVEIAIPDVEERIDILMKQFER 423


>gi|198282689|ref|YP_002219010.1| AAA ATPase central domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667409|ref|YP_002424881.1| ATPase, AAA family [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247210|gb|ACH82803.1| AAA ATPase central domain protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519622|gb|ACK80208.1| ATPase, AAA family [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 442

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 32/177 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP GSGK+ LA + +  +       S +   +  I           +        T
Sbjct: 48  MILWGPPGSGKTTLAQLLAHTAGRHFQILSAVNSGVREIRAAVSSA----EAAQSLGQGT 103

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     L+ A T   S+ +    L SR   A V  +  
Sbjct: 104 VLFIDEIHRFNKSQQDALLPYVEEGVVTLIGATTENPSFALVNA-LLSR---ARVYVLKA 159

Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             ++ L  V+    ADR        I +  ++   ++   +     A +L++ +D  
Sbjct: 160 LTEEELGAVLDHTLADRVLGLGALAIEMSPEVRKGLLTAAD---GDARRLLNLLDLA 213


>gi|66358362|ref|XP_626359.1| 26S proteasome regulatory subunit, S6a like AAA ATpase
           [Cryptosporidium parvum Iowa II]
 gi|46227999|gb|EAK88919.1| 26S proteasome regulatory subunit, S6a like AAA ATpase
           [Cryptosporidium parvum Iowa II]
          Length = 461

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 67/181 (37%), Gaps = 40/181 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 240 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFEIAREK 299

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A   P + 
Sbjct: 300 APSIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRPDTL 359

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     V++  P+++   +++      R++ +D     +  Q + RS  
Sbjct: 360 DPAL--LRSGRLD--RKVELPHPNEEARSRILQ--IHSRKMNVDLNDVNF--QELSRSTD 411

Query: 211 F 211
            
Sbjct: 412 D 412


>gi|320161389|ref|YP_004174613.1| Holliday junction ATP-dependent DNA helicase RuvB [Anaerolinea
           thermophila UNI-1]
 gi|319995242|dbj|BAJ64013.1| Holliday junction ATP-dependent DNA helicase RuvB [Anaerolinea
           thermophila UNI-1]
          Length = 344

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 82/201 (40%), Gaps = 25/201 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSIL--IDTRKPVLLE 114
           P   V+  GP G GK+ LA++ +++        +      A  L +IL  +     + ++
Sbjct: 54  PLEHVLFYGPPGLGKTTLAHVLANEMGVNIKITAGPAIEKAGDLAAILTNLKGGDILFID 113

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-----------LCS--- 160
           +I  L     ++  +  ++  +   +++       S  + LP            L S   
Sbjct: 114 EIHRLGKAIEEV--LYPAMEDFALDIMIGKGPAARSIRLKLPRFTVIGATTRLALISAPL 171

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM- 219
           R +   V ++   D + +E ++ +  +  Q+ ++ +    I  R   +   A +L+ ++ 
Sbjct: 172 RARFGAVYRLDYYDVNAIEAILKRAASRLQMTVEPEGFREIAHRARGTPRVALRLLRRVR 231

Query: 220 DNLALSRGMGITRSLAAEVLK 240
           D   +     +T+++AAE L 
Sbjct: 232 DFAQVRHQGLVTQAVAAEALN 252


>gi|149244336|ref|XP_001526711.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449105|gb|EDK43361.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 839

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 78/270 (28%), Gaps = 56/270 (20%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLL-----VHSAIEQAVRLIDSWPSWPSRVVI 68
           DKQK      +      +       + DD +     V         LI +         +
Sbjct: 167 DKQKEMAELKRRAAAPLAHRVRPK-TLDDFIGQEKLVGE-NAPLRNLIQAD---LIPSFL 221

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF- 127
           L GP G GK+ +A I +  +            ++  +        +++  L    T LF 
Sbjct: 222 LWGPPGCGKTTIARIIAKSTDYRYVELSGADSNAKSLKDAFAQA-DNLKKLTGQRTILFL 280

Query: 128 ---HIINSIHQYDSSLLM-------------TARTFPVSWGVCLPDLCSR--------LK 163
              H  N   Q    LL+             T      +       L SR        L 
Sbjct: 281 DEIHRYNKAVQD---LLLPVIERGTCTVIGATTENPSFNLNNA---LLSRLHTFVMEPLT 334

Query: 164 AATVVKISLPDDDFLEKV-----IVK-MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
              VV+I          +     + K +F    + ++     YI +        A  +++
Sbjct: 335 TTAVVRI------LHRALYDINQLRKNLFQLHYMTLENGAFTYIAELCMGDSRVALNILE 388

Query: 218 KMDNL--ALSRGMGITRSLAAEVLKETQQC 245
            ++    +      +   +A E   + +Q 
Sbjct: 389 TVNAYLSSAKFKTELQTKVAQETKPQEEQA 418


>gi|283851952|ref|ZP_06369228.1| AAA ATPase central domain protein [Desulfovibrio sp. FW1012B]
 gi|283572676|gb|EFC20660.1| AAA ATPase central domain protein [Desulfovibrio sp. FW1012B]
          Length = 408

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 14/162 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI--LIDTRKPVLLEDIDLLD 120
             ++L GP G GKS LA I +        R S     L ++  LI  ++ ++L+++    
Sbjct: 43  PSLLLFGPPGCGKSTLALILARAKGRPYVRVSAPEAGLATLRELIKGKEILILDELHRFS 102

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                 F     + +    +L+   T   S+ V    L SRL    V+++       L  
Sbjct: 103 KAQQDFFLP---LLETGEMVLLATTTENPSFSVTRQ-LLSRL---HVLRLRPLSHGELML 155

Query: 181 VIVKMFADRQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219
           +  +      + +        A +     R+L+   + V  +
Sbjct: 156 LAERGAKAAGLDLARESLDAIALLSSGDGRTLLNLVEFVAAL 197


>gi|242078039|ref|XP_002443788.1| hypothetical protein SORBIDRAFT_07g002080 [Sorghum bicolor]
 gi|241940138|gb|EES13283.1| hypothetical protein SORBIDRAFT_07g002080 [Sorghum bicolor]
          Length = 802

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 71/220 (32%), Gaps = 53/220 (24%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRST-------------------------------- 91
           + + +  GP G GK+ +A  ++                                      
Sbjct: 191 APIYLFHGPHGVGKTSMARTFAAALNCRSPGGNQPCGRCDECVAIFSGSSSSVVEIDASK 250

Query: 92  -----RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH---QYDSSLLMT 143
                R + + ++   +   +   V++ D D    +    + I NS+    +    +++T
Sbjct: 251 LDCKSRVAALLRNACEVPASSHFKVMIVD-DCQHMDKEGWYSIYNSLEGIPESTIFVMIT 309

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           +          LP   + +      +    DD  + + ++K+     +  + +    + +
Sbjct: 310 SDID------KLP--SNSIGWCQSYRFCKIDDAEIARRLIKICTKEGMEFEAEALDLLAR 361

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
           +           +  +D L L  G  I++S+  E++ +  
Sbjct: 362 KAN---GSIRDAIQMLDQLTL-LGKRISKSVTHELIGDVS 397


>gi|196010085|ref|XP_002114907.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190582290|gb|EDV22363.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 872

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 239 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 298

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 299 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVVVMAATNRPNSIDGA 358

Query: 155 L 155
           L
Sbjct: 359 L 359



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            W +  V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 525 CWKTLGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 583


>gi|57640604|ref|YP_183082.1| cell division protein CDC48 [Thermococcus kodakarensis KOD1]
 gi|6513847|dbj|BAA87866.1| Pk-cdcA [Thermococcus kodakaraensis]
 gi|57158928|dbj|BAD84858.1| CDC48/VCP homolog, AAA superfamily [Thermococcus kodakarensis KOD1]
          Length = 835

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  I  +  + 
Sbjct: 242 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKEAEEN 301

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 302 APSIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALD-- 359

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    +++ +PD    ++++      R + ++  
Sbjct: 360 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPLEPD 398



 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 46/208 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + ++L GP G+GK+ LA   +++S++   +               K +  I    R+ 
Sbjct: 577 PPKGILLYGPPGTGKTLLAKAVANESQANFIAIRGPEVLSKWVGETEKRIREIFRKARQA 636

Query: 111 ----VLLEDIDLLD---FND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +     ++          QL   ++ I +    +++ A   P      
Sbjct: 637 APTVVFIDEIDAIAPARGSEGDRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDPA 696

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208
           L  L      RL     + +  PD+    + I K+   R + +   +    + ++ E  +
Sbjct: 697 L--LRPGRFDRL-----ILVPAPDEKARLE-IFKVHTRR-VPLAGDVDLRELAKKTEGYT 747

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAA 236
                 LV      AL     I R L  
Sbjct: 748 GADIAALVR---EAALIAMRRIMRELPR 772


>gi|120554251|ref|YP_958602.1| IstB ATP binding domain-containing protein [Marinobacter aquaeolei
           VT8]
 gi|120324100|gb|ABM18415.1| IstB domain protein ATP-binding protein [Marinobacter aquaeolei
           VT8]
          Length = 166

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 24/125 (19%)

Query: 56  IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKS--------- 99
           +     W      V+L+GPSG+GK+ +AN    +      R   F  IA           
Sbjct: 4   LQQDSDWVHHADNVLLIGPSGTGKTHIANALGHQLTEQGVRCKLFPAIALVQHLQQAKRD 63

Query: 100 ----LDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                    +D  + ++++DI  +   D +   LF  I   ++   SL++TA      W 
Sbjct: 64  LDLMTAMTRLDKYRVIIIDDIGYVKKTDAETQVLFEFIAHRYESG-SLIVTANQPFSEWD 122

Query: 153 VCLPD 157
              PD
Sbjct: 123 QIFPD 127


>gi|227515139|ref|ZP_03945188.1| recombination ATPase [Lactobacillus fermentum ATCC 14931]
 gi|227086471|gb|EEI21783.1| recombination ATPase [Lactobacillus fermentum ATCC 14931]
          Length = 448

 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 33/185 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111
             +IL GP G GK+ LA I + K+++                  +  +  +     R  V
Sbjct: 53  PSLILWGPPGVGKTTLAEIIAQKTKAKFITFSAVNSSIKDIKQVMEAATANHQFGERTVV 112

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169
            +++I   +      F       +    +L+  T              L SR     V  
Sbjct: 113 FIDEIHRFNKAQQDAFLPY---VERGEIILIGATTENPSFELNAA---LLSR---CKVFV 163

Query: 170 ISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   D   L K++ +       FAD +I ++  +   I          A   ++ ++   
Sbjct: 164 LRALDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFAN---GDARMALNTLEMAV 220

Query: 224 LSRGM 228
           L+   
Sbjct: 221 LNGQR 225


>gi|289432427|ref|YP_003462300.1| IstB domain protein ATP-binding protein [Dehalococcoides sp. GT]
 gi|288946147|gb|ADC73844.1| IstB domain protein ATP-binding protein [Dehalococcoides sp. GT]
          Length = 469

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 35/156 (22%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--- 106
           E A+    +   W    ++  GPSG+GK+ LA   +++  ST    + K    ++ D   
Sbjct: 114 EAALDFASNPTGW----LVFTGPSGAGKTHLAAAIANRRLSTGQPVLYKRASELIDDLKK 169

Query: 107 ------------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145
                                 ++++D+ +   ++    +L  ++      +   ++T  
Sbjct: 170 SFEPDSDAGYSQSFDILKNAPLLVIDDLTVQSGSEWSKEKLDQLLTYRFSQELPTIITLS 229

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKI----SLPDDDF 177
           T         P + SRL   ++ KI      P+D  
Sbjct: 230 TPINELD---PRIQSRLLDKSISKIYTVAPNPEDSL 262



 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 30/151 (19%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------------------WSDKSRST 91
            A  L   +   P   ++  G +G GK+ LA+                    + D  RST
Sbjct: 298 AAYNLALDFSRNPESWLVFQGETGCGKTHLASAIVNERYRQGKPAMFVVVPEFLDHLRST 357

Query: 92  RFSNIAKSLDSILIDTRKP--VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTART 146
                  S D +    +    ++L+D        +   +L+ +IN  +    + ++T R 
Sbjct: 358 FSPESKTSYDQMFDAVKNAKLLVLDDFGEQSSTPWAQEKLYQVINYRYNRRLATVITTRC 417

Query: 147 FPVSWGVCLPDLCSRL---KAATVVKISLPD 174
                 V +    SR    + + V  I+ P+
Sbjct: 418 QLSEIEVAI---SSRFVDPQISMVFNITAPN 445


>gi|255070161|ref|XP_002507162.1| cell division cycle protein 48-like protein, expessed [Micromonas
           sp. RCC299]
 gi|226522437|gb|ACO68420.1| cell division cycle protein 48-like protein, expessed [Micromonas
           sp. RCC299]
          Length = 821

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 66/164 (40%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 301 APAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGMKSRAHIIVMGATNRPNS---V 357

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + +D+++
Sbjct: 358 DPALR-RFGRFDREIDIGVPDETGRLEVL--RIHTKNMKLDEEV 398



 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570


>gi|187736721|ref|YP_001840978.1| hypothetical protein pEspB_p24 [Exiguobacterium arabatum]
 gi|183223754|emb|CAQ35239.1| hypothetical protein [Exiguobacterium arabatum]
          Length = 233

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)

Query: 64  SRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL------L 113
           S+ V+L G  G+GK+ LA         K    RF  +++ ++ +    R   L      L
Sbjct: 86  SQNVVLTGSPGTGKTHLAIGLGREACHKGYEVRFFRVSELVEQLNKAWRDGKLSSFHSRL 145

Query: 114 EDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
           E  DL+  ++             LFH+I   ++   SL++T+      W     D  +RL
Sbjct: 146 ESADLIILDEMGYIPLTKESAELLFHLITDWYER-KSLIITSNLEFSQWNRIFGD--ARL 202

Query: 163 KAATV 167
            AA V
Sbjct: 203 TAALV 207


>gi|238854285|ref|ZP_04644629.1| recombination factor protein RarA [Lactobacillus gasseri 202-4]
 gi|282851165|ref|ZP_06260532.1| ATPase, AAA family [Lactobacillus gasseri 224-1]
 gi|238833096|gb|EEQ25389.1| recombination factor protein RarA [Lactobacillus gasseri 202-4]
 gi|282557697|gb|EFB63292.1| ATPase, AAA family [Lactobacillus gasseri 224-1]
          Length = 426

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 26/168 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117
           ++L GP G+GK+ LA I + +      +    S+D+    T+           +L+++I 
Sbjct: 44  LLLWGPPGTGKTSLAQIIAREFD-YPLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            +               +    LL+ A T      +  P + SR     + +     D+ 
Sbjct: 103 RMTTTLQDFLLPY---LENGRILLIGATTENPIMSIV-PAVRSR---CQIFEFKALSDED 155

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLAL 224
           +E+V+++           ++  +  + ++R  V    +    D  +AL
Sbjct: 156 IEQVLIRALK--------EVFHFKDENIDRKAVKIIAISADGDLRVAL 195


>gi|89073399|ref|ZP_01159923.1| putative ATPase protein [Photobacterium sp. SKA34]
 gi|89050886|gb|EAR56360.1| putative ATPase protein [Photobacterium sp. SKA34]
          Length = 428

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 36/198 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA + +  + +                + I K+ D+ +   R  + +
Sbjct: 34  MILWGPPGTGKTTLAEVAAHYANAEVERVSAVTSGIKDIRAAIDKARDNKMAGRRTILFV 93

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  +   + A T   S+ +    L SR   + V K+ 
Sbjct: 94  DEVHRFNKSQQDAFLPHI-----EDGTVTFIGATTENPSFELNNA-LLSR---SRVYKLK 144

Query: 172 LPDDDFLEKVIVKMFAD--RQIF---------IDKKLAAYIVQRMERSLVFAEKLVDKMD 220
             +DD + +VI +   D  R +          I  KLA ++      SL + E+L+D M 
Sbjct: 145 SLEDDEILQVIEQALMDKERGVTETNLHFADDIKDKLAEFVRGDARMSLNYLEQLID-MS 203

Query: 221 NLALSRGMGITRSLAAEV 238
                    IT  L AEV
Sbjct: 204 EEDEKGIKQITVELLAEV 221


>gi|319955815|ref|YP_004167078.1| recombination protein mgsa [Nitratifractor salsuginis DSM 16511]
 gi|319418219|gb|ADV45329.1| Recombination protein MgsA [Nitratifractor salsuginis DSM 16511]
          Length = 396

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 61/178 (34%), Gaps = 26/178 (14%)

Query: 60  PSWPSRVVI---------LVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDS------ 102
           P  P R ++           GP G GK+ L  I + K       F+     +D       
Sbjct: 25  PEAPFRKLVEKDALPHSLFFGPPGCGKTTLTRILAKKLDRPFHEFNATTLKIDELRQLFK 84

Query: 103 --ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                  +  V ++++  L     ++        +   +L++ A T    + +    + S
Sbjct: 85  KYANALQKPLVFIDEVHRLSKTQQEVLLPY---MEEQRALIVGASTQNPYYALTAA-IRS 140

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
           R   + + ++   D+  +  ++ ++     I +  +   Y++      L     L++ 
Sbjct: 141 R---SHLFELKSLDESAMRTMLRRVLEREDIEVTPEAETYLIHSSSGDLRAMLGLLES 195


>gi|150007159|ref|YP_001301902.1| recombination factor protein RarA [Parabacteroides distasonis ATCC
           8503]
 gi|149935583|gb|ABR42280.1| putative AAA family ATPase protein [Parabacteroides distasonis ATCC
           8503]
          Length = 422

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT---------RKP 110
              IL GP G GK+ LA I ++K  +     +  S+  K +  ++               
Sbjct: 40  PSFILWGPPGVGKTTLAQIIANKLDAPFYTLSAISSGVKDVREVIEKAKSNRFFNTVSPI 99

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + +++I     +      ++N++ +     L+ A T   S+ V  P L SR     V  +
Sbjct: 100 LFIDEIHRFSKSQQD--SLLNAV-ETGVVTLIGATTENPSFEVIRP-LLSR---CQVYVL 152

Query: 171 SLPDDDFLEKVIVKMFAD 188
              D + L  ++ K  A+
Sbjct: 153 KSLDKNDLLTLLYKAIAE 170


>gi|254423935|ref|ZP_05037653.1| ATPase, AAA family protein [Synechococcus sp. PCC 7335]
 gi|196191424|gb|EDX86388.1| ATPase, AAA family protein [Synechococcus sp. PCC 7335]
          Length = 742

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 37/200 (18%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           D +V        R I++        +I  GP G+GK+ LA + ++ + +   +  A    
Sbjct: 34  DAIVGPG-RLLRRAIEADQ---LSSLIFYGPPGTGKTTLAKVIANTTMAQFVAINAVLGG 89

Query: 102 SILIDTRKPVLLEDIDLLDFN---DTQLF----HIINSIH--------QYDSSLLMTART 146
              I       +E            T LF    H  N           +  + +L+ A T
Sbjct: 90  VKDIR----FAIEQAQTHRGQFGRRTILFVDEVHRFNKAQQDALLPWVENGTVILIGATT 145

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAA 199
               + V    L SR   + V ++   + D LE ++ +  +D  R      I ID     
Sbjct: 146 ENPFFEVNKA-LVSR---SRVFQLKPLNADDLEAIVQQALSDSERGYGKQDILIDTDALN 201

Query: 200 YIVQRMERSLVFAEKLVDKM 219
           ++V         A  +++ +
Sbjct: 202 HLVNVAN---GDARTVLNAL 218


>gi|4960192|gb|AAD34634.1|AF153678_3 unknown [Myxococcus xanthus]
          Length = 530

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           P    +     LV   + QA  L+       +R ++++GP GSGKS    +W  + +   
Sbjct: 302 PVTPALG----LVGQGVTQA--LLTQSLEAHARTLLVIGPEGSGKS----VWFQQLQREA 351

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
              I    D  L  + + +L+ED+D LD                   +L++AR
Sbjct: 352 VGVITPVADLDLTASSRTLLVEDVDRLDATSHAALQAF-LARDSRPVVLLSAR 403


>gi|18977335|ref|NP_578692.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638]
 gi|18893012|gb|AAL81087.1| cell division control protein 48, aaa family [Pyrococcus furiosus
           DSM 3638]
          Length = 837

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  I  +  + 
Sbjct: 242 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 301

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 302 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDAID-- 359

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    +++ +PD    ++++      R + I+  
Sbjct: 360 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPIEPD 398



 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 69/202 (34%), Gaps = 45/202 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + ++L GP G+GK+ LA   + +S++   +               K +  I    R+ 
Sbjct: 577 PPKGILLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 636

Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID +                  QL   ++ I +    +++ A   P     
Sbjct: 637 APAIIFIDEIDAIAPARGGYEGERVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDP 696

Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERS 208
            L  L      RL     + +  PD+    ++ +     R + +   +    + +R E  
Sbjct: 697 AL--LRPGRFDRL-----ILVPAPDE--KARLEIFKVHTRGMPLADDVDLKELARRTEGY 747

Query: 209 LVFAEKLVDKMDNLALSRGMGI 230
                  V +    AL+    +
Sbjct: 748 TGADIAAVCR--EAALNALRRV 767


>gi|301112162|ref|XP_002905160.1| ATPase WRNIP1 [Phytophthora infestans T30-4]
 gi|262095490|gb|EEY53542.1| ATPase WRNIP1 [Phytophthora infestans T30-4]
          Length = 499

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 34/176 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA++ S K+     S    +  +  +        + +D     + 
Sbjct: 121 PNMILWGPPGCGKTTLAHVISKKTGCKFISLSGATSKAGDMK-------DAVDRARG-ER 172

Query: 125 QLF-----------HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           ++F           H  N I         +  +  L+ A T   S+ V    L SR    
Sbjct: 173 KMFRRRTIVFVDEIHRFNKIQQDFFLPPVEDGTITLIGATTENPSFEVNNA-LLSR---C 228

Query: 166 TVVKISLPDDDFLEKVIVKMF-ADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDK 218
            V  +     + +E+++ +   A  Q+    + +   Y+  +       A   ++ 
Sbjct: 229 RVYSLKKHTPESIERILRRALTAGDQMSFEAEDEAIKYLTTQCAGDARAALNCLEM 284


>gi|239637567|ref|ZP_04678539.1| recombination factor protein RarA [Staphylococcus warneri L37603]
 gi|239596785|gb|EEQ79310.1| recombination factor protein RarA [Staphylococcus warneri L37603]
          Length = 423

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 39/200 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   +  ++         +    ++   +D   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAIAGSTQYKFRQLNAVTNTKKDMQMVVDEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            D+ +   + +   D  R +      +D     Y   +   S       ++ ++   LS 
Sbjct: 152 YDNDIRLALNRALEDDQRGLKSYTPEVDDDAMTYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 -----GMGITRSLAAEVLKE 241
                   IT   A + L++
Sbjct: 209 TEEDGQRHITLQDAKDCLQK 228


>gi|83815055|ref|YP_444609.1| putative ATPase [Salinibacter ruber DSM 13855]
 gi|83756449|gb|ABC44562.1| putative ATPase [Salinibacter ruber DSM 13855]
          Length = 341

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 31/143 (21%)

Query: 46  HSAIEQAVRL---IDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKS 88
             A+  A      +   PSW  R+              + LVGP+G+GK+ L     +  
Sbjct: 25  AEALRVARAFVAELRRTPSWAERLRALLGVGDERLPQGLYLVGPTGTGKTHLLAATCNAL 84

Query: 89  RSTRFSNI------------AKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQ 135
              R                  +    L D      L+++++ D  N+ +L  ++ ++  
Sbjct: 85  MPERACAFLHSSTLFRQTEPPDAFAHRLADQYAACCLDEVEIDDPANEMRLAGVMKTLAA 144

Query: 136 YDSSLLMTARTFPVS-WGVCLPD 157
            D  LL T+   P       L D
Sbjct: 145 RDVPLLATSNVAPEEYLATQLGD 167


>gi|67623645|ref|XP_668105.1| 26S protease subunit regulatory subunit 6a [Cryptosporidium hominis
           TU502]
 gi|54659292|gb|EAL37876.1| 26S protease subunit regulatory subunit 6a [Cryptosporidium
           hominis]
          Length = 425

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 67/181 (37%), Gaps = 40/181 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 204 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFEIAREK 263

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A   P + 
Sbjct: 264 APSIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRPDTL 323

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     V++  P+++   +++      R++ +D     +  Q + RS  
Sbjct: 324 DPAL--LRSGRLD--RKVELPHPNEEARSRILQ--IHSRKMNVDLNDVNF--QELSRSTD 375

Query: 211 F 211
            
Sbjct: 376 D 376


>gi|229495215|ref|ZP_04388950.1| ATPase, AAA family [Porphyromonas endodontalis ATCC 35406]
 gi|229317658|gb|EEN83556.1| ATPase, AAA family [Porphyromonas endodontalis ATCC 35406]
          Length = 458

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 35/158 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS----------------TRFSNIAKSLDSILIDTR 108
             +IL GP G GK+ LA + +    +                       +S         
Sbjct: 64  PSLILWGPPGVGKTTLAELIAQSVEAPFYKLSAVGSGVGDVRRVLEEAERSTQGFFAAKS 123

Query: 109 KPVL-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           +P+L +++I     +    L     +  +     L+ A T   S+ V  P L SR     
Sbjct: 124 RPLLFIDEIHRFSKSQQDSLL----AAVERGIVTLIGATTENPSFEVIRP-LLSR---CQ 175

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           V  +   + + L +++ +        I   +  Y+V R
Sbjct: 176 VFVLQSLEPEDLRQLLER-------AISTDI--YLVPR 204


>gi|218533465|ref|YP_002424280.1| transposase [Methylobacterium chloromethanicum CM4]
 gi|218525768|gb|ACK86352.1| IstB domain protein ATP-binding protein [Methylobacterium
           chloromethanicum CM4]
          Length = 274

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 30/149 (20%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW----- 84
           F F     +         A   AV   D+W +     ++L GP G GKS LA        
Sbjct: 84  FDFAAVPML-------SKAQVMAVSAGDAWLT-QGANLLLFGPPGGGKSHLAAAIGLALV 135

Query: 85  -----------SDKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFH 128
                      +D  +  + +     L++ +  +D    ++L+D+  +  +  +   LF 
Sbjct: 136 EAGFKVLFTRTTDLVQKLQVARRELGLEAAIGRLDRFDLLILDDLAYVTKDQAETSVLFE 195

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +I S      SL++TA      WG   PD
Sbjct: 196 LI-SARYERRSLMITANQPFGEWGRIFPD 223


>gi|118347942|ref|XP_001007447.1| AAA family ATPase, CDC48 subfamily protein [Tetrahymena
           thermophila]
 gi|89289214|gb|EAR87202.1| AAA family ATPase, CDC48 subfamily protein [Tetrahymena thermophila
           SB210]
          Length = 839

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                 N+ K+ +    +
Sbjct: 272 PPRGVLLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKN 331

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ +      +++ A   P S    
Sbjct: 332 SPAIIFIDELDSIAPKRDKVSGEVERRVVSQLLTLMDGLKGRGHVIVIAATNRPNSLD-- 389

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +++      + + +D+ +
Sbjct: 390 -PALR-RFGRFDREIDIGVPDEIGRMEIL--RIHTKNMKLDEDV 429



 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++  +   S     L ++     +  + E  D  
Sbjct: 545 PSKGVLFYGPPGCGKTLLAKAVANECSANFISIKGPELLTMWFGESEANVREVFDKA 601


>gi|74188900|dbj|BAE39223.1| unnamed protein product [Mus musculus]
          Length = 442

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLELAGPQLVQMFIGDGAKLVRDAFALAKEK 281

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 396 GAQCKAVCVEAGMIALRRGAT 416


>gi|320100449|ref|YP_004176041.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM
           2162]
 gi|319752801|gb|ADV64559.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM
           2162]
          Length = 746

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 59/163 (36%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G+GK+ LA   +++  +                     + K  +    +
Sbjct: 221 PPKGILLYGPPGTGKTLLAKALANEIGAYFITINGPEIMSKFYGESEERLRKIFEEAQAN 280

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 281 APAVIFIDEIDSIAPKREEVTGEVEKRVVAQLLTLMDGLKERGKVIVIGATNRPDAID-- 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    ++++      R + + + +
Sbjct: 339 -PALRRPGRFDREIEIPPPDKRARKEILAVH--TRNMPLTEDV 378



 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 497 PPKGILLFGPPGTGKTLLAKAVATESGANFIA 528


>gi|224127332|ref|XP_002329251.1| predicted protein [Populus trichocarpa]
 gi|222870705|gb|EEF07836.1| predicted protein [Populus trichocarpa]
          Length = 776

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                 N+ K+ +    +
Sbjct: 221 PPRGILLYGPPGTGKTLIARAIANETGAFFFCINGPEIMSKMAGESEQNLRKAFEEAEKN 280

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 281 APAIVFIDEIDSIAPKREKTGGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSLD-- 338

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      +++ + + +
Sbjct: 339 -PALR-RFGRFDKEIDIGVPDEVGRLEVLRVH--TKKMKLSEDV 378



 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 494 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 550


>gi|270308478|ref|YP_003330536.1| ATPase, AAA family [Dehalococcoides sp. VS]
 gi|270154370|gb|ACZ62208.1| ATPase, AAA family [Dehalococcoides sp. VS]
          Length = 457

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 19/137 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +I  GP GSGK+ LANI + +  +        S     L  ++ + R+ +  E    +
Sbjct: 58  PSLIFWGPPGSGKTTLANIIARRLDAHFSALSAVSAGVADLRRVVEEARERLKFERRRTI 117

Query: 120 DFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            F D    H  N           +  + +L+ A T   S+ V    L SR   A V  ++
Sbjct: 118 LFIDEI--HRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSA-LLSR---AQVYVLN 171

Query: 172 LPDDDFLEKVIVKMFAD 188
              +  +  ++ +   D
Sbjct: 172 PLSEKEISLILKRSLED 188


>gi|312870086|ref|ZP_07730222.1| replication-associated recombination protein A [Lactobacillus oris
           PB013-T2-3]
 gi|311094389|gb|EFQ52697.1| replication-associated recombination protein A [Lactobacillus oris
           PB013-T2-3]
          Length = 441

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 37/202 (18%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP- 110
            LI++        +I  GP G GK+ LA I + ++++    FS +  S+  I    ++  
Sbjct: 44  ELIENDQ---LSSLIFWGPPGVGKTTLAEIIAQQTKAHFVTFSAVTSSIKDIRKLMQEAE 100

Query: 111 ----------VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                       +++I   +      F       +  S +L+ A T   S+ +    L S
Sbjct: 101 QNREYGERTICFIDEIHRFNKAQQDAFLPF---VERGSIILIGATTENPSFEINSA-LLS 156

Query: 161 R-----LKAATVVKISLPDDDFLEKVIVKMFADRQIFID--KKLAAYIVQRMERSLVFAE 213
           R     LK+ T   +    ++ +++ +    A  Q+ +D        I Q        A 
Sbjct: 157 RCKVFVLKSLTTADL----EEVIKRALAHPAAFPQLEVDCQPDAIHLIAQFAN---GDAR 209

Query: 214 KLVDKMDNLAL---SRGMGITR 232
             ++ ++   L     G  +T 
Sbjct: 210 VALNTLEMAVLNGKREGKKVTI 231


>gi|302335915|ref|YP_003801122.1| Recombination protein MgsA [Olsenella uli DSM 7084]
 gi|301319755|gb|ADK68242.1| Recombination protein MgsA [Olsenella uli DSM 7084]
          Length = 462

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 17/134 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP+G+GK+ LA I ++ + +      A +  ++    R+    E   L     T L
Sbjct: 56  VLLYGPAGTGKTTLARIIANTTHAEFVEVSAVT-GTVRDLRREIDAAESRLLASGRRTIL 114

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + VV+++  D
Sbjct: 115 FVDEIHRFNRTQQDALLHAVEDRTVVLVGATTENPYFEVNSA-LISR---SRVVELTPLD 170

Query: 175 DDFLEKVIVKMFAD 188
           D+ +  ++ +   D
Sbjct: 171 DEAVRLLVRRAVDD 184


>gi|297616541|ref|YP_003701700.1| ATPase AAA [Syntrophothermus lipocalidus DSM 12680]
 gi|297144378|gb|ADI01135.1| AAA ATPase central domain protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 429

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 33/167 (19%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAK 98
           LV        R+I+         +IL GP G+GK+ L NI + K+RS        S    
Sbjct: 36  LVGPG-APLRRMIERDQ---LHSMILYGPPGTGKTTLGNIIAKKTRSHFEYLKAVSTTTA 91

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTART 146
            +  +  +  + +            T LF    H  N           +    +L+ A T
Sbjct: 92  DIRQLAGEAGQRL------KFYGQRTILFLDEIHRFNKAQQDALLPMVEEGIFILIGATT 145

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQI 191
               + +    L SR     +  +   D+  +E+++++   D  R +
Sbjct: 146 ENPLYEINSA-LLSR---THIYVLEPLDEQAIERILLRALNDKERGL 188


>gi|242398512|ref|YP_002993936.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
           739]
 gi|242264905|gb|ACS89587.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
           739]
          Length = 810

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 62/162 (38%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  +  ++ + 
Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKESEEN 274

Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 275 APSIIFIDEIDAIAPKRGEVTGEVEKRVVAQLLTLMDGLKSRGKVIVIGATNRPDALD-- 332

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    ++I +PD    ++++      R + I+  
Sbjct: 333 -PALRRPGRFDREIEIGVPDKQGRKEILQ--IHTRGMPIEPD 371



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 42/142 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G+GK+ LA   + +S +                    NI +        
Sbjct: 551 PPKGILLYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIREIFRKARQA 610

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL   ++ I +    +++ A   P      
Sbjct: 611 APTVIFIDEIDAIAPRRGSDVNRVTDRLINQLLTEMDGIEENSGVVVIAATNRPDILDPA 670

Query: 155 L--------------PDLCSRL 162
           L              PD+ +RL
Sbjct: 671 LLRPGRFDRIILVPAPDVKARL 692


>gi|156382458|ref|XP_001632570.1| predicted protein [Nematostella vectensis]
 gi|156219628|gb|EDO40507.1| predicted protein [Nematostella vectensis]
          Length = 432

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 31/153 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++L GP G GK+ LA+I ++ +R T          ++   T     ++++  +  N+ 
Sbjct: 32  PSMVLWGPPGCGKTTLAHIVANNARKT----TTTRFVTLSATTSGINDIKEVVKVAKNEQ 87

Query: 125 QLF-----------HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
           Q+F           H  N           +  +  L+  T              L SR  
Sbjct: 88  QMFRRKTILFVDEIHRFNKTQQDTFLPHVENGTITLIGATTENPSFQLNTA---LLSR-- 142

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              V+ +     + L++++ +   +    I+ K
Sbjct: 143 -CRVIVLDKLSSEHLQRILCRAVENMGCVIENK 174


>gi|39997165|ref|NP_953116.1| recombination factor protein RarA [Geobacter sulfurreducens PCA]
 gi|39984055|gb|AAR35443.1| ATPase, AAA family [Geobacter sulfurreducens PCA]
 gi|307634974|gb|ADI84901.2| stalled replication fork rescue ATPase [Geobacter sulfurreducens
           KN400]
          Length = 440

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP GSGK+ LA + ++  KS    FS I   +  I    ++    E+       +T
Sbjct: 55  LIFWGPPGSGKTTLARVIANATKSHFIFFSAILSGIKEIREIVKEA---EEEKKYRGRNT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  ++ A T   S+ V  P L SR     V+ ++ 
Sbjct: 112 ILFVDEIHRFNKSQQDAFLPYVERGTFTIIGATTENPSFEVVAP-LLSR---CKVLVLNP 167

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224
              + +E+++    AD         +  D    A++    E+S       ++ ++  A L
Sbjct: 168 LSQENVEQILRSALADPERGLGASGLAADDDALAFMA---EQSGGDGRVALNTLETAARL 224

Query: 225 SRGMGITRSLAAEVLKE 241
            +   I      E +++
Sbjct: 225 VKNGRIDLESVREAIQK 241


>gi|38233937|ref|NP_939704.1| recombination factor protein RarA [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200198|emb|CAE49879.1| Conserved hypothetical protein (putative ATP/GTP binding protein)
           [Corynebacterium diphtheriae]
          Length = 456

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 74/191 (38%), Gaps = 32/191 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           VIL GP G+GK+ +A++ S  +                    I ++  +++   R  + +
Sbjct: 73  VILYGPPGTGKTTIASLISAGTGHEFVGLSALNSGVKEIREVIDQARRNLIHGKRTVLFI 132

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +  + LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 133 DEVHRFSKTQQDALL----AAVENRTVLLVAATTENPSFSVVAP-LLSR---SLILQLKP 184

Query: 173 P--DD---DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL--ALS 225
              DD     L  +  K   D +I I  +    +V     S   A + +  ++    +L+
Sbjct: 185 LTHDDIKTVLLHALQDKRGLDNRITISDEALEQLVL---LSGGDARRSLTYLEAASESLA 241

Query: 226 RGMGITRSLAA 236
            G  +T  +  
Sbjct: 242 DGEELTPEIIR 252


>gi|229122163|ref|ZP_04251378.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus
           95/8201]
 gi|228661289|gb|EEL16914.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus
           95/8201]
          Length = 196

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    +++ G  G+GK+ LA    ++     +  + +S+  +L       
Sbjct: 32  AVKYVKTFKEWNGESLMIWGEPGNGKTHLAAAVVNELSKKGYIVVFQSVPELLQRIRSTF 91

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 92  NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 151

Query: 148 PVSWG 152
           P    
Sbjct: 152 PKELK 156


>gi|313888444|ref|ZP_07822111.1| ATPase, AAA family [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845473|gb|EFR32867.1| ATPase, AAA family [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 433

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 23/141 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121
           V+  GP G GK+ LA I +  +        A +     L  +L      +  +++  + F
Sbjct: 55  VLFYGPPGVGKTTLAEIIARTTNKNFVKLSAVTSNLKELREVLAKAEDSMKFDNVSTIVF 114

Query: 122 -NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            ++    H  N           +     L+ A T    + V    L SR++   ++ +  
Sbjct: 115 IDEI---HRFNKSQQDALLPFVERGVISLIGATTENPYFEVNRA-LLSRMQ---IINLHP 167

Query: 173 PDDDFLEKVIVKMFAD--RQI 191
            +D  LE ++ K  +D  R +
Sbjct: 168 LEDKDLEDMMYKALSDKERGL 188


>gi|213401060|gb|ACJ47178.1| chromosomal replication initiation protein [Wolbachia endosymbiont
           of Armadillidium vulgare]
          Length = 134

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SRL    V  I+    +    ++        +++ K +  ++ + +
Sbjct: 1   RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVERMNMYVPKDVLEFLARNI 60

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           + ++   E  ++K+ + +L  G  +T   A+E L
Sbjct: 61  KSNIRELEGALNKVAHTSLI-GRSMTVESASETL 93


>gi|188579356|ref|YP_001922801.1| IstB domain protein ATP-binding protein [Methylobacterium populi
           BJ001]
 gi|179342854|gb|ACB78266.1| IstB domain protein ATP-binding protein [Methylobacterium populi
           BJ001]
          Length = 243

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 36/150 (24%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVR-------LIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           FP    ++  DL         VR       L D      SR  +L+G +GSGK+ LA   
Sbjct: 65  FPVMKTLAEFDLAASPVNAAVVRDLHQGNFLTD------SRNAVLIGGTGSGKTHLAIAI 118

Query: 85  -----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFNDTQ 125
                 ++    RF N    ++ +  + R                V+L+++  L F    
Sbjct: 119 GANCVREREARVRFFNTVDLVNQLEAEARAGKAGRLASQLSRTDLVILDELGYLPFPRAG 178

Query: 126 ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
              LFH+I+ +++  +S+++T       W 
Sbjct: 179 GQMLFHLISRLYER-TSVIVTTNLPFAEWP 207


>gi|159899639|ref|YP_001545886.1| recombination factor protein RarA [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892678|gb|ABX05758.1| AAA ATPase central domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 459

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 23/141 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124
           +IL GP G+GK+ LA I +  S +        S  S  +   + V+ E  +        T
Sbjct: 53  LILWGPPGTGKTTLARIIAGASSAHF---EPLSAVSAGVAELRKVVKEANERRGMYGKRT 109

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ +    L SR     V+ +  
Sbjct: 110 VLFIDEIHRWNKAQQDAVLPAVEDGTVTLIGATTENPSFEINRA-LLSR---CRVIVLEA 165

Query: 173 PDDDFLEKVIVKMFAD--RQI 191
            +D  ++K+I +   D  R +
Sbjct: 166 LEDAAIDKIIERALNDNERGL 186


>gi|108758514|ref|YP_632391.1| TPR repeat-containing ClpX C4-type zinc finger protein [Myxococcus
           xanthus DK 1622]
 gi|108462394|gb|ABF87579.1| tetratricopeptide repeat/ClpX C4-type zinc finger protein
           [Myxococcus xanthus DK 1622]
          Length = 565

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           P    +     LV   + QA  L+       +R ++++GP GSGKS    +W  + +   
Sbjct: 337 PVTPALG----LVGQGVTQA--LLTQSLEAHARTLLVIGPEGSGKS----VWFQQLQREA 386

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
              I    D  L  + + +L+ED+D LD                   +L++AR
Sbjct: 387 VGVITPVADLDLTASSRTLLVEDVDRLDATSHAALQAF-LARDSRPVVLLSAR 438


>gi|270159557|ref|ZP_06188213.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289165647|ref|YP_003455785.1| recombination protein [Legionella longbeachae NSW150]
 gi|269987896|gb|EEZ94151.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288858820|emb|CBJ12734.1| recombination protein [Legionella longbeachae NSW150]
          Length = 431

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 25/195 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ +A + ++       +  A       I        E++  +    T L
Sbjct: 49  MILWGPPGVGKTTIARVAAETFDCEWIALSAVFSGVKDIRAAIEKAQENL--IYGKHTLL 106

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 107 FIDEIHRFNKAQQD--ALLPYTESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLEP 160

Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
             +D L ++  K        +  D++    I++  +         ++++     +     
Sbjct: 161 LSEDELRQLFQKAHQAVLSHLQFDEEAIEMIIEFADGDARRLLNTLEQLQTACTAMNNEH 220

Query: 230 ITRSLAAEVLKETQQ 244
           +T+      L +  +
Sbjct: 221 VTKDFVINSLAKNPR 235


>gi|158333693|ref|YP_001514865.1| transposase-associated ATP-binding protein [Acaryochloris marina
           MBIC11017]
 gi|158339312|ref|YP_001520489.1| transposase-associated ATP-binding protein [Acaryochloris marina
           MBIC11017]
 gi|158303934|gb|ABW25551.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158309553|gb|ABW31170.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 243

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 36/146 (24%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81
           F F  C  +              +  + + P W       +IL GPSG GK+ LA     
Sbjct: 57  FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 105

Query: 82  ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125
                      ++  +           L        +D    ++L+D+     ++ +   
Sbjct: 106 KMLEFGKRVKFFAANALVQHLQQAKLQLQLHPMLKKLDRYDLLVLDDLGYCKKSEAETSV 165

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151
           LF +I +      SLL+TA      W
Sbjct: 166 LFELI-AHRYERKSLLITANQPFSQW 190


>gi|150005974|ref|YP_001300718.1| insertion sequence IS21-like putative ATP-binding protein
           [Bacteroides vulgatus ATCC 8482]
 gi|237726731|ref|ZP_04557212.1| transposase TnpB [Bacteroides sp. D4]
 gi|254883891|ref|ZP_05256601.1| transposase TnpB [Bacteroides sp. 4_3_47FAA]
 gi|294775528|ref|ZP_06741038.1| IstB-like ATP-binding protein [Bacteroides vulgatus PC510]
 gi|149934398|gb|ABR41096.1| insertion sequence IS21-like putative ATP-binding protein
           [Bacteroides vulgatus ATCC 8482]
 gi|229435257|gb|EEO45334.1| transposase TnpB [Bacteroides dorei 5_1_36/D4]
 gi|254836684|gb|EET16993.1| transposase TnpB [Bacteroides sp. 4_3_47FAA]
 gi|294450578|gb|EFG19068.1| IstB-like ATP-binding protein [Bacteroides vulgatus PC510]
          Length = 260

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 24/117 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GPSG+GK+ LA      +    +     +++ I+                  I   
Sbjct: 103 LILMGPSGTGKTFLAAGLVFDAVKAGYKAYLMTMEDIVNCLRLKDISTPAMMTYNKILRA 162

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS 160
           + + ++DI L        T  F++IN++H+  +S+++T    P  W   L D  L S
Sbjct: 163 QLLAIDDIMLFPVKREEATAFFNLINTLHE-KTSIIITTNKAPTEWVETLNDEILAS 218


>gi|15922015|ref|NP_377684.1| cell division control protein [Sulfolobus tokodaii str. 7]
 gi|15622803|dbj|BAB66793.1| 587aa long hypothetical cell division control protein [Sulfolobus
           tokodaii str. 7]
          Length = 587

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 66/163 (40%), Gaps = 32/163 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G+GK+ +A   +++  ++                    IA+       +
Sbjct: 360 PVKGLLLYGPPGTGKTSIAKALANELNASFIILSGEEISSAGPFNAGEIIAEKFHIARDN 419

Query: 107 TRKPVLLEDIDLLD----FND--TQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPD 157
               + +++ID++      N+  T L  ++N    I + +  +++ A   P  W +    
Sbjct: 420 APAIIFIDEIDMIARARGENEWRTALTELLNQMDGIRENEEIVVVGATNRP--WDLDPAI 477

Query: 158 LC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           L   R     ++ +  PD+    +V+  +   R + +D++   
Sbjct: 478 LRPGRFD--KIIYVPPPDEKGRAEVLKVLC--RGLTVDEETLQ 516


>gi|14591590|ref|NP_143672.1| cell division control [Pyrococcus horikoshii OT3]
 gi|3258278|dbj|BAA30961.1| 798aa long hypothetical transitional endoplasmic reticulum ATPase
           [Pyrococcus horikoshii OT3]
          Length = 798

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 47/217 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G+GK+ LA   + +S +   +                NI +        
Sbjct: 552 PPKGVLLYGPPGTGKTLLAKAVATESEANFIAVRGPEVLSKWVGESEKNIREIFRKARQA 611

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL   ++ I +    +++ A   P      
Sbjct: 612 APTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIQENTGVVVIAATNRPDILDPA 671

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209
           L  L      RL     + +  PD++   ++       R + +   +    + +R E   
Sbjct: 672 L--LRPGRFDRL-----ILVPAPDEEARFEIFKVH--TRSMPLADDVDLRELARRTEGYT 722

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
                 V +    A+        +L   ++K   + D
Sbjct: 723 GADIAAVCR--EAAMIAMRK---ALEKGIIKPGMKAD 754



 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  +  +  + 
Sbjct: 218 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 277

Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 278 APSIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKGRGKVIVIGATNRPDALD-- 335

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    +++ +PD    ++++      R + I+  
Sbjct: 336 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPIEPD 374


>gi|297688785|ref|XP_002821855.1| PREDICTED: 26S protease regulatory subunit 6A-like [Pongo abelii]
          Length = 447

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 227 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 286

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 287 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 346

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 347 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 400

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 401 GAQCKAVCVEAGMIALRRGAT 421


>gi|149022610|gb|EDL79504.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform
           CRA_c [Rattus norvegicus]
          Length = 421

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 201 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 260

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 261 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 320

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 321 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 374

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 375 GAQCKAVCVEAGMIALRRGAT 395


>gi|74268141|gb|AAI03064.1| PSMC3 protein [Bos taurus]
          Length = 429

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 209 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 268

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 269 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 328

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 329 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 382

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 383 GAQCKAVCVEAGMIALRRGAT 403


>gi|264658023|emb|CBH31231.1| chromosomal replication initiator protein [Wolbachia endosymbiont
           of Simulium squamosum]
          Length = 99

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           ++++D+  +   D    + FH  N++   +  L+++A   P         + SRL    
Sbjct: 41  LMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGL 99


>gi|260753314|ref|YP_003226207.1| recombination factor protein RarA [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552677|gb|ACV75623.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 449

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 88/255 (34%), Gaps = 38/255 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSR 65
               + +K   P+N+      +          D++    V        R++    +    
Sbjct: 11  LVFTENEKQPLPENRP----LADILRPK-HLSDVIGQAHVTGENGIIGRMV---AAGRLS 62

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            +IL GP G+GK+ +A + ++     RF  ++     +    +  +  E         T 
Sbjct: 63  SLILWGPPGTGKTSIAQLLAESVG-MRFEMVSAIFSGVADLKKIFLKAEH-HRQQGRQTL 120

Query: 126 LF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N           +  + +L+  T      +       L SR   A VV ++
Sbjct: 121 LFIDEIHRFNKGQQDSFLPYIENGTFVLVGATTENPSFALNAA---LLSR---AQVVTLN 174

Query: 172 LPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
             D++ L  ++ +        + +D+     ++   +    F     + +  LA++    
Sbjct: 175 RLDEEALGLLLERAETVSGQLLPVDEDARKALIASADGDGRFLLNQAEIL--LAMNLTKS 232

Query: 230 ITRSLAAEVLKETQQ 244
           ++    A++L++   
Sbjct: 233 LSVPELAQILQKRMA 247


>gi|158339225|ref|YP_001520402.1| transposase-associated ATP-binding protein [Acaryochloris marina
           MBIC11017]
 gi|158309466|gb|ABW31083.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 243

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 36/146 (24%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81
           F F  C  +              +  + + P W       +IL GPSG GK+ LA     
Sbjct: 57  FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 105

Query: 82  ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125
                      ++  +           L        +D    ++L+D+     ++ +   
Sbjct: 106 KMLEFGKRVKFFAANALVQHLQQAKLQLQLHPMLKKLDRYDLLVLDDLGYCKKSEAETSV 165

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151
           LF +I +      SLL+TA      W
Sbjct: 166 LFELI-AHRYERKSLLITANQPFSQW 190


>gi|161528731|ref|YP_001582557.1| ATPase AAA [Nitrosopumilus maritimus SCM1]
 gi|160340032|gb|ABX13119.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1]
          Length = 721

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 63/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P   ++L GP G GK+ LA + + +S +  F                  L  I  + +  
Sbjct: 212 PHSGILLYGPPGCGKTLLAKVMASESEANMFPINGPEIMNKYYGETEAKLRDIFKEAKDN 271

Query: 109 --KPVLLEDIDLLD-FNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    +             L  +++ ++   + +++ A   P S    
Sbjct: 272 SPSIIFIDEIDAIAPKREEAYGDVEKRVVAQLLALMDGLNDRGNVIVLGATNRPDS---V 328

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +     +IS+P++D   +++      R + ID+ +
Sbjct: 329 DPALRRPGRFDREFEISVPNEDGRIEILQ--IHTRGMPIDEDI 369



 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P +  ++ GP G GK+ L    + ++ +   
Sbjct: 485 PPKGALIYGPPGCGKTLLGRALATETGANMI 515


>gi|95769198|gb|ABF57414.1| proteasome 26S ATPase subunit 3 [Bos taurus]
          Length = 428

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 208 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 268 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 327

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 328 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 381

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 382 GAQCKAVCVEAGMIALRRGAT 402


>gi|18129329|emb|CAC83488.1| DnaA protein [Wolbachia endosymbiont of Dirofilaria repens]
          Length = 136

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SRL    V  I+    +    ++        I++   +  ++ + +
Sbjct: 1   RSPSDLDGVEERIKSRLGWGLVADINKTTFELRLGILQAKVEQMNIYVPDDILEFLARNI 60

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + ++   E  ++K+ + +L  G  +T   A+E L +  + +
Sbjct: 61  KSNIRELEGALNKVAHTSLI-GRSMTVESASETLADLLRSN 100


>gi|261401234|ref|ZP_05987359.1| replication-associated recombination protein A [Neisseria lactamica
           ATCC 23970]
 gi|269208822|gb|EEZ75277.1| replication-associated recombination protein A [Neisseria lactamica
           ATCC 23970]
          Length = 436

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 61/153 (39%), Gaps = 23/153 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R  +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVENGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             D L+K+I K+ A    R   I+      +V 
Sbjct: 163 SSDGLKKLIAKVSALPEYRNFTIEADAQELLVN 195


>gi|139436949|ref|ZP_01771109.1| Hypothetical protein COLAER_00082 [Collinsella aerofaciens ATCC
           25986]
 gi|133776596|gb|EBA40416.1| Hypothetical protein COLAER_00082 [Collinsella aerofaciens ATCC
           25986]
          Length = 454

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 34/187 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------------DTRKPVL 112
           VIL GP+G+GK+ LA+I ++ ++S      A +     +              D R  + 
Sbjct: 61  VILYGPAGTGKTTLAHIIANHTKSEFVEVSAVTGTVKDLRRVIDEAKTRLNTYDRRTILF 120

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L H      +  + +++ A T    + V    L SR     VV++ 
Sbjct: 121 IDEIHRFSKSQQDALLH----AVENRTVIMIGATTENPYFEVNSA-LLSR---GRVVELE 172

Query: 172 LPDDDFLEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
              D+ +  +I +     Q        D+  A  I        + A      +  L L+ 
Sbjct: 173 HLKDEDIATLIERALEAPQGLNGKFSADEDTAKTICT------LAAGDARSALTTLELAS 226

Query: 227 GMGITRS 233
            + +TR 
Sbjct: 227 EIAVTRP 233


>gi|300707453|ref|XP_002995933.1| hypothetical protein NCER_101048 [Nosema ceranae BRL01]
 gi|239605177|gb|EEQ82262.1| hypothetical protein NCER_101048 [Nosema ceranae BRL01]
          Length = 788

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 42/142 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  +                +N+ K+ D    +
Sbjct: 248 PPKGILLYGPPGSGKTLIAKAIANETGAFIYMINGPEIMSKMAGESENNLRKAFDEAEKN 307

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
               + ++++D L                 QL  +++     +  +++ A   P      
Sbjct: 308 KPAIIFIDEVDSLAPKRDKTQGEVERRIVSQLLTLMDGAKAREGVIVLAATNRPNSIDPA 367

Query: 149 --------VSWGVCLPDLCSRL 162
                       + +PD   RL
Sbjct: 368 LRRYGRFGKELEIGVPDATGRL 389



 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 49/194 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           PS+ V+  GP G GK+ LA   + + ++   S                N+ +  D     
Sbjct: 521 PSKGVLFYGPPGCGKTLLAKAVATECKANFISVKGPELLTMWYGESEANVRELFDRARAA 580

Query: 107 TRKPVLLEDIDLLD-----------FNDTQLFHIINSI-------HQYDSSLLMTARTFP 148
               +  ++ID +             +D     +IN I       +   +  ++ A   P
Sbjct: 581 APCVLFFDEIDSVAKSRGSASGSGGADDR----VINQILTEMDGMNAKKNVFIIGATNRP 636

Query: 149 VSWG--VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRM 205
                 +  P    RL    +V I LPD D    ++      R+  +   +   ++V+  
Sbjct: 637 DQLDSAIMRP---GRLD--QLVYIPLPDADSRMSIL--KAVLRKTPLSPDINLNHLVEAT 689

Query: 206 ER-SLVFAEKLVDK 218
           +R S     ++  +
Sbjct: 690 DRFSGADLTEICQR 703


>gi|297619992|ref|YP_003708097.1| AAA family ATPase [Methanococcus voltae A3]
 gi|297378969|gb|ADI37124.1| AAA family ATPase, CDC48 subfamily [Methanococcus voltae A3]
          Length = 781

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   +++S +  +                 N+ K  +    +
Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANESGANYYTINGPEIMSKYVGETEENLRKIFEEAEEN 269

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P S  + 
Sbjct: 270 APSVIFIDEIDAVAPKRDEVTGEVERRMVAQLLTLLDGLENRGQVVILAATNRPDSIDIA 329

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
           L     RL       I +PD +   +++      R + ++  
Sbjct: 330 LRR-PGRLDRELT--IGIPDRNARREILD--IHTRSMPLEAD 366


>gi|46447333|ref|YP_008698.1| recombination factor protein RarA [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400974|emb|CAF24423.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 422

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 70/195 (35%), Gaps = 32/195 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILIDTRKPVLL 113
           VIL GP G GK+ +A +++                 +     I ++ +  L      + +
Sbjct: 45  VILWGPPGCGKTSIARLYAQAFNMQFISMSAIFSGVADLKKTIKEAQNQPLFHKGTLLFV 104

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++I   + +    F       +  + +L+  T              L SRL+   V+ I 
Sbjct: 105 DEIHRFNKSQQDAFLPF---VENGTIILIGATTENPSFYLNGA---LLSRLR---VLPIY 155

Query: 172 LPDDDFLEKVI---VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
             D   LE+++    K FA   + +  +   +++   +    +   L++ +   +     
Sbjct: 156 PLDGFSLEQLLERYEKQFAP--LPLTAEARHWLITCAQGDGRYLYNLIENLRYAS---KQ 210

Query: 229 GITRSLAAEVLKETQ 243
            +   L  ++ ++  
Sbjct: 211 ILDIPLLEKIFQKRS 225


>gi|307245272|ref|ZP_07527363.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254221|ref|ZP_07536065.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258684|ref|ZP_07540419.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853916|gb|EFM86130.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862820|gb|EFM94770.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867341|gb|EFM99194.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 428

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 35/206 (16%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           S  +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++    
Sbjct: 31  SHSMIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTG 86

Query: 122 NDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATV 167
             T LF    H  N   Q        D +++    T              L SR   A +
Sbjct: 87  RRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKI 140

Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
             +       + +V+     D  R +      I+  +   +   +     FA   ++ M 
Sbjct: 141 YILKPLQAVEIVQVLTNALYDKERGLGNESYCIEDNVIELLADYVNGDARFALNCLELMS 200

Query: 221 NLALS--RGMGITRSLAAEVLKETQQ 244
           ++A    +G  + ++L AEVL E Q 
Sbjct: 201 DMAEISPQGKRLNKALLAEVLGERQA 226


>gi|332259898|ref|XP_003279021.1| PREDICTED: 26S protease regulatory subunit 6A [Nomascus leucogenys]
          Length = 439

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413


>gi|169824140|ref|YP_001691751.1| cell division protein [Finegoldia magna ATCC 29328]
 gi|302380855|ref|ZP_07269318.1| putative Cell division protease FtsH [Finegoldia magna
           ACS-171-V-Col3]
 gi|167830945|dbj|BAG07861.1| cell division protein [Finegoldia magna ATCC 29328]
 gi|302311350|gb|EFK93368.1| putative Cell division protease FtsH [Finegoldia magna
           ACS-171-V-Col3]
          Length = 628

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 53/217 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +++   FS        + +                     
Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSGSEFVEMFVGLGASKVRDLFKQAADKAPCI 258

Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFP------- 148
           V +++ID +            D  +  L  ++N           +++ A   P       
Sbjct: 259 VFIDEIDAIGKRRDTAGISGNDEREQTLNQLLNEMDGFDGNSGVVILAATNRPEILDPAL 318

Query: 149 -------VSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                      V LPDL  R+      A  +KI    D   + V +         +   +
Sbjct: 319 TRPGRFDRQIPVELPDLQGRIDILKVHARKIKIEK--DMDYKAVALMTAGTSGAQLANIV 376

Query: 198 AAYIVQ--RMERSLVFAEKLVDKMDNLALSRGMGITR 232
               ++  RM R++V  E L++ ++ +   +    T 
Sbjct: 377 NEAALRAVRMGRNIVTQEDLIESVEVVIAGQQRKGTV 413


>gi|71894847|ref|NP_001026361.1| 26S protease regulatory subunit 6A [Gallus gallus]
 gi|224051055|ref|XP_002199964.1| PREDICTED: proteasome 26S ATPase subunit 3 [Taeniopygia guttata]
 gi|53134709|emb|CAG32356.1| hypothetical protein RCJMB04_23k2 [Gallus gallus]
          Length = 422

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 202 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 261

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 262 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 321

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 322 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 375

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 376 GAQCKAVCVEAGMIALRRGAT 396


>gi|292670832|ref|ZP_06604258.1| replication-associated recombination protein A [Selenomonas noxia
           ATCC 43541]
 gi|292647453|gb|EFF65425.1| replication-associated recombination protein A [Selenomonas noxia
           ATCC 43541]
          Length = 472

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 28/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I + ++++    FS +   +  I    ++     D   +  +  
Sbjct: 84  MIFWGPPGVGKTTLAQIIAAQTKAKFITFSAVTSGIKDIRTVMQEA----DRRRIYGDRI 139

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  S +L+ A T   S+ +    L SR     V  +  
Sbjct: 140 IVFVDEIHRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINSA-LLSR---CRVFVLQG 195

Query: 173 PD-DDFLEKVIVKMFADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
              DD    +   + +DR     +I +  +  A I          A   ++ +
Sbjct: 196 LTIDDIKRLLQHALSSDRELRVLRIHLSDEGIAAIAAFANGDARSALSTLEML 248


>gi|18129325|emb|CAC83639.1| DnaA protein [Wolbachia endosymbiont of Onchocerca ochengi]
          Length = 131

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SRL    V  I+    +    ++        I++   +  ++ + ++ ++   E  ++K
Sbjct: 10  KSRLGWGLVADINETTFELRLGILQIKVEQMNIYVPDDVLEFLAKNIKSNIRELEGALNK 69

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQCD 246
           + + +L  G  IT   A+E L +  + +
Sbjct: 70  VVHTSLI-GRSITVESASETLADLLRSN 96


>gi|291384964|ref|XP_002709141.1| PREDICTED: proteasome 26S ATPase subunit 3 [Oryctolagus cuniculus]
          Length = 439

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413


>gi|145590270|ref|YP_001152272.1| replication factor C large subunit [Pyrobaculum arsenaticum DSM
           13514]
 gi|158514159|sp|A4WGV3|RFCL_PYRAR RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|145282038|gb|ABP49620.1| AAA ATPase, central domain protein [Pyrobaculum arsenaticum DSM
           13514]
          Length = 422

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 68/196 (34%), Gaps = 33/196 (16%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107
           +R V+L GP G GK+ L +  + +                              S+    
Sbjct: 56  ARAVLLAGPPGVGKTTLIHALAREIGYELIELNASDVRTAERLKEVVGRGLREGSLFGYG 115

Query: 108 RKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTF--PVSWGVCLPDLCSRLK 163
            K VL +++D L   +    L  II  I      ++MTA     P      L D+     
Sbjct: 116 GKIVLFDEVDGLHVKEDAGGLEAIIEIIENSKVPIVMTANNPYDPRFRP--LRDI----- 168

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            + VV +    ++ + +V+ ++        +++    I +    SL      ++ +  + 
Sbjct: 169 -SLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKS---SLGDLRAAINDL-QMY 223

Query: 224 LSRGMG-ITRSLAAEV 238
           LS G   +T      V
Sbjct: 224 LSGGRKTLTVDDIKRV 239


>gi|90078188|dbj|BAE88774.1| unnamed protein product [Macaca fascicularis]
          Length = 423

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397


>gi|13928808|ref|NP_113783.1| 26S protease regulatory subunit 6A [Rattus norvegicus]
 gi|1710984|gb|AAB70882.1| spermatogenic cell/sperm-associated Tat-binding protein homolog
           Sata [Rattus norvegicus]
          Length = 442

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQMDGFQPNTQVKVIAATNRVDIL 341

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 396 GAQCKAVCVEAGMIALRRGAT 416


>gi|73982398|ref|XP_860742.1| PREDICTED: similar to 26S protease regulatory subunit 6A
           (TAT-binding protein 1) (TBP-1) (Spermatogenic
           cell/sperm-associated TAT-binding protein homolog SATA)
           isoform 3 [Canis familiaris]
          Length = 371

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 151 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 210

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 211 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 270

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 271 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 324

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 325 GAQCKAVCVEAGMIALRRGAT 345


>gi|228008337|ref|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculus]
 gi|13543237|gb|AAH05783.1| Proteasome (prosome, macropain) 26S subunit, ATPase 3 [Mus
           musculus]
 gi|38304011|gb|AAH62019.1| Proteasome (prosome, macropain) 26S subunit, ATPase 3 [Rattus
           norvegicus]
 gi|62635506|gb|AAX90622.1| proteasome (prosome, macropain) 26S subunit, ATPase 3 [Mus
           musculus]
 gi|123226009|emb|CAM19025.1| proteasome (prosome, macropain) 26S subunit ATPase 3 [Mus musculus]
 gi|149022608|gb|EDL79502.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform
           CRA_a [Rattus norvegicus]
          Length = 442

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 396 GAQCKAVCVEAGMIALRRGAT 416


>gi|74191536|dbj|BAE30344.1| unnamed protein product [Mus musculus]
 gi|74207397|dbj|BAE30880.1| unnamed protein product [Mus musculus]
 gi|74219779|dbj|BAE40481.1| unnamed protein product [Mus musculus]
          Length = 423

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397


>gi|21361144|ref|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapiens]
 gi|20532406|sp|P17980|PRS6A_HUMAN RecName: Full=26S protease regulatory subunit 6A; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT5; AltName:
           Full=Proteasome 26S subunit ATPase 3; AltName:
           Full=Proteasome subunit P50; AltName: Full=Tat-binding
           protein 1; Short=TBP-1
 gi|78070571|gb|AAI06921.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo
           sapiens]
 gi|119588322|gb|EAW67916.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo
           sapiens]
 gi|123990193|gb|ABM83907.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [synthetic
           construct]
 gi|123999303|gb|ABM87228.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [synthetic
           construct]
 gi|133776999|gb|AAH08713.4| Proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo
           sapiens]
 gi|133777094|gb|AAH73165.3| Proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo
           sapiens]
 gi|189069266|dbj|BAG36298.1| unnamed protein product [Homo sapiens]
          Length = 439

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413


>gi|289811638|ref|ZP_06542267.1| chromosomal replication initiation protein [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
          Length = 125

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 16/92 (17%)

Query: 8  YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54
          ++   P +    QP+                 +  +     +  + D+ +   + + A  
Sbjct: 2  HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 61

Query: 55 LIDSWPSWPSRV---VILVGPSGSGKSCLANI 83
                  P      + L G +G GK+ L + 
Sbjct: 62 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHA 93


>gi|223993867|ref|XP_002286617.1| hypothetical protein THAPSDRAFT_267952 [Thalassiosira pseudonana
           CCMP1335]
 gi|220977932|gb|EED96258.1| hypothetical protein THAPSDRAFT_267952 [Thalassiosira pseudonana
           CCMP1335]
          Length = 811

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 235 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 Q+  +++ + Q  S +++ A   P S    
Sbjct: 295 APAIIFIDEIDSIAPKREKTNGEVERRIVSQMLTLMDGLKQRASVVVIGATNRPNSMD-- 352

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD++   +V       R + +D+ +
Sbjct: 353 -PALR-RFGRFDREIDIGVPDENGRLEVF--RIHTRNMKLDEDV 392


>gi|149725084|ref|XP_001491841.1| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit
           ATPase 3 isoform 1 [Equus caballus]
          Length = 423

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397


>gi|305662545|ref|YP_003858833.1| Proteasome-activating nucleotidase [Ignisphaera aggregans DSM
           17230]
 gi|304377114|gb|ADM26953.1| Proteasome-activating nucleotidase [Ignisphaera aggregans DSM
           17230]
          Length = 407

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G GK+ LA   + ++ +T    +A  L    I     ++ E  +L 
Sbjct: 176 PPKGVLLYGPPGCGKTLLAKAIAHETNATFIRLVASELAQKFIGEGARIVREVFELA 232


>gi|78188604|ref|YP_378942.1| recombination factor protein RarA [Chlorobium chlorochromatii CaD3]
 gi|78170803|gb|ABB27899.1| Recombination protein MgsA [Chlorobium chlorochromatii CaD3]
          Length = 453

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 76/218 (34%), Gaps = 37/218 (16%)

Query: 48  AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
           A     R ++   S     VI  G  G GK+ LA I +   +         ++D+ + + 
Sbjct: 54  ANAPLRRFLE---SGQMPSVIFWGAPGCGKTTLAEICASTLQCHF--EQLSAVDAGVKEV 108

Query: 108 RKPVLLEDIDLLDFNDTQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCL 155
           RK + +            LF    H  N           +    LL+ A T   S+ V  
Sbjct: 109 RKALDIATRVRQAGQRCLLFIDEIHRFNKSQQDTLLHALEQGLILLIGATTENPSFEVNG 168

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVK------MFADRQIFIDK-KLA-AYIVQRMER 207
             L SR++   V  +     + LE+VI +      +F +R I +   ++   Y       
Sbjct: 169 A-LLSRMQ---VYTLKPLTAEELEQVIRRALATDALFRERSIELADLEVLWHYCA----- 219

Query: 208 SLVFAEKLVDKMDNL-ALSRGMGITRSLAAEVLKETQQ 244
               A K ++ ++   AL      +  L  E  +   Q
Sbjct: 220 --GDARKALNAIEAAFALFPTNQSSVQLTREHFEAALQ 255


>gi|73748379|ref|YP_307618.1| ATP-binding protein [Dehalococcoides sp. CBDB1]
 gi|73660095|emb|CAI82702.1| ATP-binding protein, DnaC family [Dehalococcoides sp. CBDB1]
          Length = 435

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 35/156 (22%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--- 106
           E A+    +   W    ++  GPSG+GK+ LA   +++  ST    + K    ++ D   
Sbjct: 80  EAALDFASNPTGW----LVFTGPSGAGKTHLAAAIANRRLSTGQPVLYKRASELIDDLKK 135

Query: 107 ------------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145
                                 ++++D+ +   ++    +L  ++      +   ++T  
Sbjct: 136 SFEPDSDAGYSQSFDILKNAPLLVIDDLTVQSGSEWSKEKLDQLLTYRFSQELPTIITLS 195

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKI----SLPDDDF 177
           T         P + SRL   ++ KI      P+D  
Sbjct: 196 TPINELD---PRIQSRLLDKSISKIYTVAPNPEDSL 228



 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 30/151 (19%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104
            A  L   +   P   ++  G +G GK+ LA+   ++        +   +   L      
Sbjct: 264 AAYNLALDFSRNPESWLVFQGETGCGKTHLASAIVNERYRQGKPAMFVVVPEFLDHLRST 323

Query: 105 ---------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTART 146
                          +   K ++L+D        +   +L+ +IN  +    + ++T R 
Sbjct: 324 FSPESKTSYDQMFDAVKNAKLLVLDDFGEQSSTPWAQEKLYQVINYRYNRRLATVITTRC 383

Query: 147 FPVSWGVCLPDLCSRL---KAATVVKISLPD 174
                 V +    SR    + + V  I+ P+
Sbjct: 384 QLSEIEVAI---SSRFVDPQISMVFNITAPN 411


>gi|317124709|ref|YP_004098821.1| recombination protein MgsA [Intrasporangium calvum DSM 43043]
 gi|315588797|gb|ADU48094.1| Recombination protein MgsA [Intrasporangium calvum DSM 43043]
          Length = 466

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 26/188 (13%)

Query: 54  RLIDSWPSWPSRV-VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           RLI+        +  I+ GP G+GK+ LA++ +  +        A +     + +     
Sbjct: 54  RLIEGSGGAAGPLSAIIWGPPGTGKTTLAHLVATAADRRFVELSAVTAGVKDVRSVMESA 113

Query: 113 LEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCS 160
           + + DL     T LF    H              +  + +L+ A T   S+ V  P L S
Sbjct: 114 VRERDLY-GRQTVLFLDEIHRFTKAQQDALLPGVENRTVILVAATTENPSFSVIAP-LLS 171

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQRMERSLVFAEKL 215
           R   + ++ +    D+ +  V+     D R       ID     ++V+    S   A + 
Sbjct: 172 R---SVLITLGSLSDEDIRDVVRSALVDERGFAGAHLIDDDAMDHLVRT---SGGDARRA 225

Query: 216 VDKMDNLA 223
           +  ++  A
Sbjct: 226 LTSLEAAA 233


>gi|301772544|ref|XP_002921690.1| PREDICTED: 26S protease regulatory subunit 6A-like [Ailuropoda
           melanoleuca]
          Length = 422

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 202 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 261

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 262 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 321

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 322 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 375

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 376 GAQCKAVCVEAGMIALRRGAT 396


>gi|148695574|gb|EDL27521.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform
           CRA_b [Mus musculus]
          Length = 421

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 201 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 260

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 261 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 320

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 321 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 374

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 375 GAQCKAVCVEAGMIALRRGAT 395


>gi|116334669|ref|YP_796196.1| recombination factor protein RarA [Lactobacillus brevis ATCC 367]
 gi|116100016|gb|ABJ65165.1| Recombination protein MgsA [Lactobacillus brevis ATCC 367]
          Length = 439

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 24/133 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G GK+ LA I + ++++T  S    ++DS +   +K +   + D      T +
Sbjct: 53  MIFWGPPGVGKTTLAEIIARQTQATFLS--FSAVDSSISKIKKIMHQAEADREIGEQTIV 110

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAATVVK 169
           F    H  N           +  S +L+ A T   S+ V    L SR     LKA     
Sbjct: 111 FVDEIHRFNKAQQDAFLPYVERGSIILIGATTENPSFEVNSA-LLSRCKVFVLKALATAD 169

Query: 170 ISLPDDDFLEKVI 182
           I    D  L   +
Sbjct: 170 I----DQLLRNAL 178


>gi|167383517|ref|XP_001736564.1| transitional endoplasmic reticulum ATPase [Entamoeba dispar SAW760]
 gi|165900980|gb|EDR27180.1| transitional endoplasmic reticulum ATPase, putative [Entamoeba
           dispar SAW760]
          Length = 804

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 66/164 (40%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G GK+ +A   ++++ +  F                SN+ ++ +    +
Sbjct: 234 PPRGILLYGPPGCGKTMIARAIANETGAFFFLINGPEIMSKMAGESESNLRRAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLD------FND------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +         +      +QL  +++ +      +++ A   P +  V 
Sbjct: 294 SPAIIFIDEIDSIAPKRDKSGGEVERRVVSQLLTLMDGLKARSQVIVIAATNRPNTIDVA 353

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + + +PD +   +++      +++ I   +
Sbjct: 354 LR----RFGRFDREIDLGIPDTEGRREILQ--IHTKKMKIADDV 391


>gi|2492523|sp|Q63569|PRS6A_RAT RecName: Full=26S protease regulatory subunit 6A; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT5; AltName:
           Full=Proteasome 26S subunit ATPase 3; AltName:
           Full=Spermatogenic cell/sperm-associated Tat-binding
           protein homolog SATA; AltName: Full=Tat-binding protein
           1; Short=TBP-1
 gi|1395184|dbj|BAA11939.1| proteasomal ATPase (rat TBP1) [Rattus norvegicus]
          Length = 439

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413


>gi|328887929|ref|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taurus]
          Length = 440

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 220 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 279

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 280 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 339

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 340 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 393

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 394 GAQCKAVCVEAGMIALRRGAT 414


>gi|254172418|ref|ZP_04879093.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
 gi|214033347|gb|EEB74174.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
          Length = 838

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 78/217 (35%), Gaps = 47/217 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + ++L GP G+GK+ LA   +++S +   +               K +  I    R+ 
Sbjct: 579 PPKGILLYGPPGTGKTLLAKAVANESEANFIAIRGPEVLSKWVGETEKRIREIFRKARQA 638

Query: 111 ----VLLEDIDLLDFND------TQLFHIINS-------IHQYDSSLLMTARTFPVSWGV 153
               V +++ID +            L  +IN        I +    +++ A   P     
Sbjct: 639 APTVVFIDEIDAIAPARGSYEGGRHLDTLINQLLTEMDGIQENSGVVVIGATNRPDIIDP 698

Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-R 207
            L  L      RL     + +  PD+    + I K+   R + + + +    + ++ E  
Sbjct: 699 AL--LRPGRFDRL-----ILVPAPDEKARLE-IFKVHTRR-VPLAEDVNLEELAKKTEGY 749

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           S    E LV      AL         L  +V+++  +
Sbjct: 750 SGADIEALVR---EAALIALRRAVSRLPRDVVEKQSE 783



 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 79/221 (35%), Gaps = 54/221 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  I  +  + 
Sbjct: 244 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKEAEEN 303

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 304 APSIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKGRGKVIVIAATNRPDAID-- 361

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQR-- 204
            P L    +    +++ +PD    ++++      R + ++          +   + +R  
Sbjct: 362 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPLEPSFDKEEVLAVLEELARRGG 418

Query: 205 -MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                +   + LV+     A   G  I      E+LK + +
Sbjct: 419 KFAEEVGKLKPLVE-----AAQSGREI-----KEILKGSGE 449


>gi|305663873|ref|YP_003860161.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378442|gb|ADM28281.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
          Length = 475

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 42/226 (18%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
             P  L +  + L+V     +A         +  R ++L+GP G GKS  A   +     
Sbjct: 218 DLPDKLKMDIETLIVDPLNIKA--------KYAPRGILLIGPPGVGKSVTAEAIAQALTK 269

Query: 88  ---------SRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL-----DFNDTQLFHI 129
                     RS  +    K+L++I    +K     VL++D D L       ++  +  +
Sbjct: 270 GIVRLTPSTYRSMWYGMTEKTLNNIFASLKKRKDIVVLIDDADFLVQRFNAIHEAYIAEV 329

Query: 130 ---INSIHQYDSSLLMTARTFP--VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
              +N +      L++     P  +   +  P    RL    V+ +  PD    +K+I +
Sbjct: 330 NIWLNILQDPLRPLVIMTTNVPEIIDQALIRP---GRLD--VVIFMGYPDKYMRKKIIKR 384

Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +     I I+ ++   IVQR  R    AE  +D +  +A S+G GI
Sbjct: 385 ICESYNITINDQIIEEIVQR-TRWFNAAE--LDSLIRMAASKGHGI 427


>gi|17541368|ref|NP_501841.1| hypothetical protein K08F4.1 [Caenorhabditis elegans]
 gi|3878374|emb|CAA93081.1| C. elegans protein K08F4.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 850

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 77/205 (37%), Gaps = 31/205 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR----------STRFSNIAKSLDSILIDTR---- 108
            S++++L GP+G GKS LA I + ++           +   +++ K L+  +  +R    
Sbjct: 329 SSKMLLLSGPAGLGKSTLARIVARQAGYSTIDVNASDARTVADLNKVLEGAVKTSRTLDA 388

Query: 109 ----KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW--GV---CLPDLC 159
                 ++L++ID    +  +  H++  I       +   R   +     +    L DL 
Sbjct: 389 DQRPACLILDEIDGTPIDTIR--HLVRCIQATGKKAI---RRPIIGICNNLYTPALRDLR 443

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
                A  V++     D L K + ++    ++  D      + +     +  +   +  +
Sbjct: 444 ---GVAWCVQLVATKQDVLAKRLEEICDRERLRCDLSTLRKLCELCANDMRHSINTLQWV 500

Query: 220 DNLALSRGMGITRSLAAEVLKETQQ 244
              A      I   L  EV+++ + 
Sbjct: 501 AVAARKSNRAIGMKLIHEVIEKEKG 525


>gi|74212095|dbj|BAE40211.1| unnamed protein product [Mus musculus]
          Length = 404

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 243

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 244 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 303

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 304 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 357

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 358 GAQCKAVCVEAGMIALRRGAT 378


>gi|86143957|ref|ZP_01062325.1| putative ATPase, AAA family protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85829664|gb|EAQ48127.1| putative ATPase, AAA family protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 425

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 24/143 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS---------------RSTRFSNIAKSLDSILIDTRK 109
             +IL GP G GK+ LA+I +++S                     + AK+   +      
Sbjct: 40  PSLILWGPPGVGKTTLASIIAEESKRPFYVLSAINSGVKDVREVIDKAKNAGGLFTQKNP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L     +  +     L+ A T   S+ V +P L SR     V 
Sbjct: 100 LLFIDEIHRFSKSQQDSLL----AAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151

Query: 169 KISLPDDDFLEKVIVKMFADRQI 191
            ++    D L  ++ +      I
Sbjct: 152 VLNPFSADDLRALLKRAMTQDSI 174


>gi|90422127|ref|YP_530497.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
 gi|90422520|ref|YP_530890.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
 gi|90424553|ref|YP_532923.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
 gi|90425963|ref|YP_534333.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
 gi|90104141|gb|ABD86178.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
 gi|90104534|gb|ABD86571.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
 gi|90106567|gb|ABD88604.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
 gi|90107977|gb|ABD90014.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
          Length = 277

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 53/171 (30%), Gaps = 44/171 (25%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWP--------SWPSRVVIL--VGPSGSGKSCLA 81
            P     +  D         AV +I+           SW  +   L   GP G GKS L 
Sbjct: 77  LPAGKSFATFDF-------AAVPMINKSQITALAAGGSWLDKGANLLAFGPPGVGKSHLG 129

Query: 82  NIWSDKSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFND 123
                      +  +      ++                  +D    ++L+D+  +  + 
Sbjct: 130 AALGQALIENGYRVLFTRTTDMVQRLQAARRDLTLQNVMEKLDKYDLLILDDLSYVRKDQ 189

Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            +   LF +I S      SLL+TA      W    PD     KA TV  I 
Sbjct: 190 AETSVLFELI-SARYERRSLLITANQPFGGWEEIFPD-----KAMTVAAID 234


>gi|21619335|gb|AAH31847.1| Nuclear VCP-like [Mus musculus]
          Length = 855

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                D  + +
Sbjct: 296 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSN 355

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               V +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 356 APCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 415

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
              L       +A      V + +PD+   E+++  +   R++ + +
Sbjct: 416 DPALR------RAGRFDREVCLGIPDEAARERILQTLC--RKLRLPE 454



 Score = 36.7 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   +++S     S     L ++ +   +  +
Sbjct: 617 ILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 662


>gi|33468981|ref|NP_080447.1| nuclear valosin-containing protein-like [Mus musculus]
 gi|32699478|sp|Q9DBY8|NVL_MOUSE RecName: Full=Nuclear valosin-containing protein-like; Short=NVLp;
           Short=Nuclear VCP-like protein
 gi|12836020|dbj|BAB23464.1| unnamed protein product [Mus musculus]
 gi|74150277|dbj|BAE24409.1| unnamed protein product [Mus musculus]
 gi|148681184|gb|EDL13131.1| nuclear VCP-like [Mus musculus]
          Length = 855

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                D  + +
Sbjct: 296 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSN 355

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               V +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 356 APCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 415

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
              L       +A      V + +PD+   E+++  +   R++ + +
Sbjct: 416 DPALR------RAGRFDREVCLGIPDEAARERILQTLC--RKLRLPE 454



 Score = 36.7 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   +++S     S     L ++ +   +  +
Sbjct: 617 ILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 662


>gi|126466018|ref|YP_001041127.1| AAA family ATPase, CDC48 subfamily protein [Staphylothermus marinus
           F1]
 gi|126014841|gb|ABN70219.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1]
          Length = 733

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 78/215 (36%), Gaps = 40/215 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + ++L GP G+GK+ LA   +++  +              +    + L  I  +    
Sbjct: 221 PPKGILLYGPPGTGKTLLAKALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERN 280

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 281 APAIIFIDEIDSIAPKREEVTGEVEKRVVAQLLALMDGLKERGKVIVIGATNRPDALD-- 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL--VFA 212
            P L    +    ++I  PD     +++      R + +++ +    +  M         
Sbjct: 339 -PALRRPGRFDREIEIPPPDKRARREILAVH--TRNMPLEEDVDLDKIAEMTHGYTGADL 395

Query: 213 EKLVDKMDNLALSR-----GMGITRSLAAEVLKET 242
             LV +    AL R      + +T+ + AE L++ 
Sbjct: 396 AALVKEAAMAALRRFIKEGKIDLTQPIPAEKLRDL 430



 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 495 PPKGILLFGPPGTGKTLLAKAVATESGANFIA 526


>gi|48145579|emb|CAG33012.1| PSMC3 [Homo sapiens]
          Length = 404

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 243

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 244 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 303

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 304 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 357

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 358 GAQCKAVCVEAGMIALRRGAT 378


>gi|52425506|ref|YP_088643.1| recombination factor protein RarA [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307558|gb|AAU38058.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 446

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 41/206 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +I  GP G+GK+ LA I + K  +   R S +   +  I           L D R  + +
Sbjct: 53  MIFWGPPGTGKTTLAEIIAHKINAEVERISAVTSGIKEIREAIERAKQNRLADRRTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169
           +++   + +    F  HI     +  + + +  T              L SR   A V  
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNSA---LLSR---ARVYI 161

Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRM----ERSLVFAEKLVDK 218
           +    +  +  V+ +  AD  R      + +++ +   +   +      +L   E +VD 
Sbjct: 162 LKSLTNQDILHVLEQALADKERGLGNENLDLEEGILELLADYVHGDARLALNCLELMVDM 221

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244
            D     +G  I R+L  EVL E Q 
Sbjct: 222 ADES--EKGKKIDRTLLTEVLGERQA 245


>gi|34540836|ref|NP_905315.1| recombination factor protein RarA [Porphyromonas gingivalis W83]
 gi|188995064|ref|YP_001929316.1| recombination factor protein RarA [Porphyromonas gingivalis ATCC
           33277]
 gi|34397150|gb|AAQ66214.1| ATPase, AAA family [Porphyromonas gingivalis W83]
 gi|188594744|dbj|BAG33719.1| ATPase AAA family [Porphyromonas gingivalis ATCC 33277]
          Length = 434

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 29/144 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS----------------TRFSNIAKSLDSILIDTR 108
             +IL GP G GK+ LA I + +  +                   ++I  +  ++     
Sbjct: 41  PSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKEVREVIADIESNRGNLFDKGG 100

Query: 109 KPVL-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           + +L +++I     +    L     +  +     L+ A T   S+ V  P L SR     
Sbjct: 101 RAILFIDEIHRFSKSQQDSLL----AAVERGIVTLIGATTENPSFEVIRP-LLSR---CQ 152

Query: 167 VVKISL-PDDDFLEKVIVKMFADR 189
           V  +    D+D L  ++     DR
Sbjct: 153 VYVLKPQSDEDLL--LLAHRAIDR 174


>gi|18978254|ref|NP_579611.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638]
 gi|18894073|gb|AAL82006.1| cell division control protein 48, aaa family [Pyrococcus furiosus
           DSM 3638]
          Length = 796

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G+GK+ LA   ++++ +   +                 + +       +
Sbjct: 216 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFREAEEN 275

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 276 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKSRGKVIVIGATNRPDAID-- 333

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    ++I +PD    ++++      R + I+  
Sbjct: 334 -PALRRPGRFDREIEIGIPDKQGRKEILQ--IHTRGMPIEPD 372



 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 77/217 (35%), Gaps = 47/217 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + ++L GP G+GK+ LA   + +S++   +               K +  I    R+ 
Sbjct: 550 PPKGILLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 609

Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL   ++ I +    +++ A   P      
Sbjct: 610 APAIIFIDEIDAIAPTRGTDVNRVTDRIINQLLTEMDGIVENSGVVVIGATNRPDIIDPA 669

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209
           L  L      RL     + +  PD+    ++ +     R + +   +    + +R E   
Sbjct: 670 L--LRPGRFDRL-----ILVPAPDE--KARLEIFKVHTRGMPLADDVDLKELARRTEGYT 720

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
                 V +    AL+      R+L   ++KE  + D
Sbjct: 721 GADIAAVCR--EAALNAMR---RALEQGIIKEGMKAD 752


>gi|281340492|gb|EFB16076.1| hypothetical protein PANDA_010598 [Ailuropoda melanoleuca]
          Length = 439

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413


>gi|148695573|gb|EDL27520.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform
           CRA_a [Mus musculus]
          Length = 442

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 396 GAQCKAVCVEAGMIALRRGAT 416


>gi|109106421|ref|XP_001106497.1| PREDICTED: 26S protease regulatory subunit 6A isoform 5 [Macaca
           mulatta]
 gi|332836311|ref|XP_508413.3| PREDICTED: 26S protease regulatory subunit 6A [Pan troglodytes]
          Length = 439

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413


>gi|73982396|ref|XP_533187.2| PREDICTED: similar to 26S protease regulatory subunit 6A
           (TAT-binding protein 1) (TBP-1) (Proteasome subunit P50)
           isoform 1 [Canis familiaris]
          Length = 402

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 182 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 241

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 242 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 301

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 302 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 355

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 356 GAQCKAVCVEAGMIALRRGAT 376


>gi|26246173|ref|NP_752212.1| hypothetical protein c0268 [Escherichia coli CFT073]
 gi|26247398|ref|NP_753438.1| hypothetical protein c1529 [Escherichia coli CFT073]
 gi|26248357|ref|NP_754397.1| insertion sequence ATP-binding protein [Escherichia coli CFT073]
 gi|26249443|ref|NP_755483.1| hypothetical protein c3608 [Escherichia coli CFT073]
 gi|26250953|ref|NP_756993.1| hypothetical protein c5145 [Escherichia coli CFT073]
 gi|91206278|ref|YP_538632.1| insertion sequence ATP-binding protein [Escherichia coli UTI89]
 gi|191174353|ref|ZP_03035859.1| ISAfe9, transposition helper protein [Escherichia coli F11]
 gi|237702601|ref|ZP_04533082.1| insertion sequence ATP-binding protein [Escherichia sp. 3_2_53FAA]
 gi|256855281|ref|YP_003162525.1| putative IS element ATP-binding protein [Escherichia coli]
 gi|298378873|ref|ZP_06988755.1| insertion sequence ATP-binding protein [Escherichia coli FVEC1302]
 gi|300935023|ref|ZP_07150058.1| putative transposase [Escherichia coli MS 21-1]
 gi|300940794|ref|ZP_07155333.1| putative transposase [Escherichia coli MS 21-1]
 gi|26106570|gb|AAN78756.1|AE016755_256 Hypothetical protein c0268 [Escherichia coli CFT073]
 gi|26107799|gb|AAN79998.1|AE016759_272 Hypothetical protein c1529 [Escherichia coli CFT073]
 gi|26108761|gb|AAN80964.1|AE016762_217 Insertion sequence ATP-binding protein [Escherichia coli CFT073]
 gi|26109851|gb|AAN82056.1|AE016766_144 Hypothetical protein c3608 [Escherichia coli CFT073]
 gi|26111385|gb|AAN83567.1|AE016771_78 Hypothetical protein c5145 [Escherichia coli CFT073]
 gi|91075729|gb|ABE10609.1| insertion sequence ATP-binding protein [Escherichia coli UTI89]
 gi|190905376|gb|EDV65009.1| ISAfe9, transposition helper protein [Escherichia coli F11]
 gi|226903187|gb|EEH89446.1| insertion sequence ATP-binding protein [Escherichia sp. 3_2_53FAA]
 gi|256275493|gb|ACU68766.1| putative IS element ATP-binding protein [Escherichia coli]
 gi|281181643|dbj|BAI57972.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|298280482|gb|EFI21985.1| insertion sequence ATP-binding protein [Escherichia coli FVEC1302]
 gi|300454447|gb|EFK17940.1| putative transposase [Escherichia coli MS 21-1]
 gi|300459724|gb|EFK23217.1| putative transposase [Escherichia coli MS 21-1]
 gi|307629880|gb|ADN74183.1| putative IS element ATP-binding protein [Escherichia coli UM146]
 gi|315614857|gb|EFU95495.1| istB-like ATP binding family protein [Escherichia coli 3431]
 gi|323954122|gb|EGB49916.1| IstB ATP binding protein [Escherichia coli H263]
          Length = 251

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 25/145 (17%)

Query: 32  FPRCLGISRDDLL-VHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKS 88
            P    +S  D   V        R +     W      V+L G SG GKS LA    D  
Sbjct: 66  LPVAKTLSEYDFSQVPELNGAQFRQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGV 125

Query: 89  RSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFNDTQ---LF 127
               +     S   +L + RK                   ++++D+  +  +  +   LF
Sbjct: 126 VGQGYRARFYSAGELLQELRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLF 185

Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152
            +I   ++   SL++T+      WG
Sbjct: 186 ELIAHRYERG-SLVITSNHPFSMWG 209


>gi|311247879|ref|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6A-like [Sus scrofa]
          Length = 439

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413


>gi|302870328|ref|YP_003838965.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC
           27029]
 gi|315503395|ref|YP_004082282.1| ATP-dependent metalloprotease ftsh [Micromonospora sp. L5]
 gi|302573187|gb|ADL49389.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC
           27029]
 gi|315410014|gb|ADU08131.1| ATP-dependent metalloprotease FtsH [Micromonospora sp. L5]
          Length = 670

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 43/210 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 209 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKSNAPAI 268

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 269 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDTKGGVILIAATNRPDILDPAL 328

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD +  + ++      +    D  L   + +R       A
Sbjct: 329 ------LRPGRFDRQIPVDAPDMEGRKAILRVHAKGKPFTPDVDL-DAVARRTP-GFSGA 380

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             L + ++  AL       R++  + L+E+
Sbjct: 381 -DLANVINEAALLTARKEQRAITNDSLEES 409


>gi|213054513|gb|ACJ39432.1| cdc48 [Larimichthys crocea]
          Length = 806

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMGKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|54696316|gb|AAV38530.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [synthetic
           construct]
 gi|61368868|gb|AAX43250.1| proteasome 26S subunit 3 [synthetic construct]
          Length = 405

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 243

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 244 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 303

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 304 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 357

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 358 GAQCKAVCVEAGMIALRRGAT 378


>gi|156548829|ref|XP_001605497.1| PREDICTED: similar to ENSANGP00000022801 [Nasonia vitripennis]
          Length = 833

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 267 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 326

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 327 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSAHVIVMAATNRPNSIDGA 386

Query: 155 L 155
           L
Sbjct: 387 L 387



 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 540 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 596


>gi|119578807|gb|EAW58403.1| valosin-containing protein, isoform CRA_a [Homo sapiens]
          Length = 632

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 192 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 251

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 252 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 311

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 312 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 354



 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 465 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 521


>gi|88812897|ref|ZP_01128141.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231]
 gi|88789819|gb|EAR20942.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231]
          Length = 435

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 29/183 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G+GK+ LA + ++ + +   +    ++ + + + R+       +      T L
Sbjct: 45  MVFWGPPGTGKTTLARLIAEATEAEFLA--LSAVMAGVKEIRQASATGQANRARGRQTIL 102

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D +++    T              L SRL+      +  
Sbjct: 103 FVDEVHRFNKAQQDAFLPFIEDGTVVFIGATTENPSFELNNA---LLSRLR---TYVLRP 156

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             +  L ++I     D       +Q+ + ++  + ++Q  +     A  L++   +L+ +
Sbjct: 157 LGEAALARIIDCALEDSERGLGTKQLALSEQARSLLIQAADGDARSALSLLEVAADLSAA 216

Query: 226 RGM 228
              
Sbjct: 217 EAR 219


>gi|330470513|ref|YP_004408256.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032]
 gi|328813484|gb|AEB47656.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032]
          Length = 671

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 43/210 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 208 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 267

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 268 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 327

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD +  + ++      +    D  L   + +R       A
Sbjct: 328 ------LRPGRFDRQIPVDAPDMEGRKAILRVHAKGKPFTPDVDL-DSVAKRTP-GFSGA 379

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             L + ++  AL       R+++ E L+E+
Sbjct: 380 -DLANVINEAALLTARKDQRAISNESLEES 408


>gi|194225438|ref|XP_001498145.2| PREDICTED: similar to valosin [Equus caballus]
          Length = 822

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 315 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 374

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 375 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 417



 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 528 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 584


>gi|57233987|ref|YP_182021.1| recombination factor protein RarA [Dehalococcoides ethenogenes 195]
 gi|57224435|gb|AAW39492.1| ATPase, AAA family [Dehalococcoides ethenogenes 195]
          Length = 457

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 19/137 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +I  GP GSGK+ LANI + +  +        S     L  ++ + R+ +  E    +
Sbjct: 58  PSLIFWGPPGSGKTTLANIIARRLDAHFSALSAVSAGVADLRRVVEEARERLKFERRRTI 117

Query: 120 DFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            F D    H  N           +  + +L+ A T   S+ V    L SR   A V  ++
Sbjct: 118 LFIDEI--HRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSA-LLSR---AQVYVLN 171

Query: 172 LPDDDFLEKVIVKMFAD 188
              +  +  ++ +   D
Sbjct: 172 PLSEKEISLILKRSLED 188


>gi|314936259|ref|ZP_07843606.1| ATPase, AAA family [Staphylococcus hominis subsp. hominis C80]
 gi|313654878|gb|EFS18623.1| ATPase, AAA family [Staphylococcus hominis subsp. hominis C80]
          Length = 422

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 39/200 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   +  +          +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAIAGSTEYKFRQLNAVTNTKKDMQMVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR     + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIILIGATTSNPYHAIN---PAIRSR---VQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           D+  + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 DEKDVYQALTRALNDDQNGLKSYQPKIDEDALKYFSTQ---SHGDVRSALNALELAVLSA 208

Query: 227 G-----MGITRSLAAEVLKE 241
                   +T   A + L++
Sbjct: 209 KVSNNQRHVTLEDAKDCLQK 228


>gi|303234817|ref|ZP_07321442.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4]
 gi|302493935|gb|EFL53716.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4]
          Length = 628

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 53/217 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +++   FS        + +                     
Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSGSEFVEMFVGLGASKVRDLFKQAAEKAPCI 258

Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFP------- 148
           V +++ID +            D  +  L  ++N           +++ A   P       
Sbjct: 259 VFIDEIDAIGKRRDTAGISGNDEREQTLNQLLNEMDGFSGNSGVVILAATNRPEILDPAL 318

Query: 149 -------VSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                      V LPDL  R+      A  +KI    D   + V +         +   +
Sbjct: 319 TRPGRFDRQIPVELPDLQGRIDILKVHARKIKIEK--DMDYKAVALMTAGTSGAQLANIV 376

Query: 198 AAYIVQ--RMERSLVFAEKLVDKMDNLALSRGMGITR 232
               ++  RM R++V  E L++ ++ +   +    T 
Sbjct: 377 NEAALRAVRMGRNIVTQEDLIESVEVVIAGQQRKGTV 413


>gi|255714124|ref|XP_002553344.1| KLTH0D14586p [Lachancea thermotolerans]
 gi|238934724|emb|CAR22906.1| KLTH0D14586p [Lachancea thermotolerans]
          Length = 774

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 36/156 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P R ++L GP G+GK+ L    + ++ +   +    S+ S  +   +  L          
Sbjct: 273 PPRGILLHGPPGTGKTMLLRCVASEANAHVLTINGPSIVSKYLGETEAALRDIFNEARIY 332

Query: 113 ------LEDIDLLD----FND---------TQLFHIINSIHQYDSSLLMTARTFPVS--W 151
                 +++ID L      +D           L  +++ +      +++ A   P +   
Sbjct: 333 QPSIIFIDEIDSLAPSRTSDDSGEVESRVVATLLTLMDGMGSTGRVVVVAATNRPNAVDM 392

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            +  P    RL     V+I +PD +    +++K F 
Sbjct: 393 ALRRP---GRLD--QEVEIGIPDVESRHDILLKQFR 423



 Score = 35.9 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 78/260 (30%), Gaps = 70/260 (26%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL    P     SR  L V +               P  V+ L GP G  K+  A   + 
Sbjct: 526 QLPLEAP--ESFSR--LSVSA---------------PKGVL-LYGPPGCSKTLTAKALAT 565

Query: 87  KSRSTRFS----------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----- 125
           +S     +                 I +            +  ++ID L  +        
Sbjct: 566 ESGVNFLAVKGPEIFNKYVGESERAIREVFRKARAAAPSIIFFDEIDALSPDRDSGGSTS 625

Query: 126 -----LFHIINSIH---QYDSSLLMTARTFPVSWGVCLPDLC-SRLKAATVVKISLPDDD 176
                L  ++N I    + +  +++ A   P      L  L   RL     + +  PD +
Sbjct: 626 AANHVLTSLLNEIDGVEELNGVVIVAATNRPDEIDAAL--LRPGRLD--RHIYVGPPDFE 681

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF----------AEKLVDKMDNLALSR 226
              +++ K   D  +     L     Q+ E                  +++ +D   + R
Sbjct: 682 ARLQILRKSTKDFHLIDSDALLQEFAQKTEGCSGAEVVLLCQEAGLAAIMENLDAEKVDR 741

Query: 227 G------MGITRSLAAEVLK 240
                   GI+R +  E+L+
Sbjct: 742 KHFDKAIAGISRGIDKEMLE 761


>gi|18129321|emb|CAC83485.1| DnaA protein [Wolbachia endosymbiont of Onchocerca gibsoni]
 gi|18129323|emb|CAC83486.1| DnaA protein [Wolbachia endosymbiont of Onchocerca gutturosa]
          Length = 133

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P         + SRL    V  I+    +    ++        I++   +  ++ + +
Sbjct: 1   RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQIKVEQMNIYVPDDVLEFLAKNI 60

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           + ++   E  ++K+ + +L  G  +T   A+E L +  + +
Sbjct: 61  KSNIRELEGALNKVVHTSLI-GRSMTVESASETLADLLRSN 100


>gi|313681270|ref|YP_004059008.1| recombination protein mgsa [Sulfuricurvum kujiense DSM 16994]
 gi|313154130|gb|ADR32808.1| Recombination protein MgsA [Sulfuricurvum kujiense DSM 16994]
          Length = 392

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 73/179 (40%), Gaps = 25/179 (13%)

Query: 70  VGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSI--------LIDTRKPVLLEDIDLL 119
            GP G GK+ LA I ++        F+  +  ++ +           T+  + ++++  L
Sbjct: 44  YGPPGCGKTTLARIIAEVMGLPFYEFNATSLKIEQLRKIFDQYENSLTKPLIFIDEVHRL 103

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
             N  ++      + + +S L++ A T    + +    + SR   + + ++     + L+
Sbjct: 104 AKNQQEVLLP---VMEKNSVLVIGASTENPYFSLTAA-MRSR---SLLFELYSITHEALD 156

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
            ++V+      I +D++   Y++     S   A  ++  +  ++ +    IT  L   +
Sbjct: 157 DLLVRTA----IEMDEEAREYLIAS---SGGDARAMLKLL-EVSCALNKPITLGLLKSL 207


>gi|219121314|ref|XP_002185883.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582732|gb|ACI65353.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 806

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 36/192 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 Q+  +++ + Q  S +++ A   P +    
Sbjct: 294 APAIIFIDEIDSIAPKREKTNGEVERRIVSQMLTLMDGLKQRASVVVIGATNRPNAID-- 351

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            P L  R  +    + I +PD++   +V       R + +D+ +    + R     V A 
Sbjct: 352 -PALR-RFGRFDREIDIGVPDENGRLEVF--RIHTRNMKLDEDVEPEAIARETHGFVGA- 406

Query: 214 KLVDKMDNLALS 225
            +       A+ 
Sbjct: 407 DIAALCTEAAMQ 418


>gi|27544710|dbj|BAC55050.1| DnaA [Mycobacterium marinum]
          Length = 188

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83
             + D  ++ ++   A     +    P+R    + + G SG GK+ L + 
Sbjct: 121 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 170


>gi|330930220|ref|XP_003302946.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1]
 gi|311321413|gb|EFQ88982.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1]
          Length = 744

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 43/196 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   + +S++                 S  A     +   +  P +
Sbjct: 519 VLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQVFMRARSSVPCV 578

Query: 113 L--EDIDLLDFNDTQLFH-----IINSIHQYDSSL-------LMTARTFPVSWGVCLPDL 158
           +  +++D L    +   H     ++N++      L       L+ A   P      +  L
Sbjct: 579 IFFDELDALVPKRSTELHEASARVVNTLLTELDGLSMREGIYLIAATNRPEMIDEAM--L 636

Query: 159 C-SRLKAATVVKISLPDD--DFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----SLVF 211
              RL+    V++  P++  D L+ +I +    R   I   LA   + R++     S   
Sbjct: 637 RPGRLETLLYVELPKPEERVDILKALIRQ----RGGVISPDLAE--IGRLDACKDFSGAD 690

Query: 212 AEKLVDKMDNLALSRG 227
            E L+ K    AL R 
Sbjct: 691 LESLLRKAGQHALRRR 706


>gi|281355193|ref|ZP_06241687.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281318073|gb|EFB02093.1| AAA ATPase central domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 438

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 33/162 (20%)

Query: 60  PSWPSRVVI---------LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           P  P R +I         L GP G GK+ LA I + ++ S  F  ++     I  D RK 
Sbjct: 36  PDAPLRRMIDSGRLASFILWGPPGCGKTTLARIMATRT-SLHFVALSAVFSGIA-DLRKA 93

Query: 111 VLLEDIDLLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLP 156
             +          T LF    H  N   Q          ++++   T             
Sbjct: 94  FEVAGKRRSCGEGTLLFIDEIHRFNRAQQDGFLPYVENGTVILVGATTENPSFELNSA-- 151

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVK--MFADRQIFIDKK 196
            L SR     V  ++  + + L +++ +     DR + + ++
Sbjct: 152 -LLSR---CKVFVMNPLNAEALAEIVRRAERILDRPLPVSEE 189


>gi|254283872|ref|ZP_04958840.1| ATPase, AAA family [gamma proteobacterium NOR51-B]
 gi|219680075|gb|EED36424.1| ATPase, AAA family [gamma proteobacterium NOR51-B]
          Length = 445

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 21/177 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            IL GP G+GK+ LA + + ++ +      A  + + + D R  V     +      T L
Sbjct: 57  FILWGPPGTGKTTLARLSAHQANAEFVQISA--VMAGVKDIRDVVARASQERGMGRATVL 114

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + + + A T   S+ V    L SR   A V K+    
Sbjct: 115 FVDEVHRFNKAQQDAFLPYVEDGTLIFIGATTENPSFEVNSA-LLSR---ARVYKLQPLS 170

Query: 175 DDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVD-KMDNLALSRGM 228
           DD L +++    A     + +     + +V   +     A   ++  +D  +   G 
Sbjct: 171 DDELSRIVRAALAAEFTDVTVSDDALSQLVASADGDARRALGQLELAVDLASAENGS 227


>gi|167745397|ref|ZP_02417524.1| hypothetical protein ANACAC_00088 [Anaerostipes caccae DSM 14662]
 gi|167655118|gb|EDR99247.1| hypothetical protein ANACAC_00088 [Anaerostipes caccae DSM 14662]
          Length = 439

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 62/170 (36%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + +  +++      A +     +        E + +     T L
Sbjct: 55  IIFYGPPGTGKTTLARVIAQTTQANFVQMNATTSGKKEMQEAVKEAKEALGMFQKK-TIL 113

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + V ++   +
Sbjct: 114 FIDEIHRFNKAQQDFLLPFVEDGTIILIGATTENPYFEVNQA-LISR---SNVFELKSLE 169

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            + ++K++V+   D        +  I  +   ++    E     A   V+
Sbjct: 170 PEDIKKLLVRAVTDDEKGMGIYRAKITDEALDFLADMAEGDARSALNAVE 219


>gi|150403244|ref|YP_001330538.1| replication factor C large subunit [Methanococcus maripaludis C7]
 gi|166977385|sp|A6VIW1|RFCL_METM7 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|150034274|gb|ABR66387.1| AAA ATPase central domain protein [Methanococcus maripaludis C7]
          Length = 482

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 44/221 (19%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVV--------ILVGPSGSGKSCLANIWSDKSRSTRFSNI 96
           V    +    LI+    W    +        +L GP GSGK+ LA   +           
Sbjct: 16  VAGHNKTKESLIE----WIESFINGQKQKPILLAGPPGSGKTTLAYAIAKDYAFDVIELN 71

Query: 97  A---------------KSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSS 139
           A                +    L   R  ++L+++D L  ND    +  II  +   ++ 
Sbjct: 72  ASDKRNKDVISQVVGTAATSKSLTGKRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENP 131

Query: 140 LLMTART--FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           +++TA     P    +          +  ++ +     + +  V+ K+       ID+K+
Sbjct: 132 VILTANDVYKPALMTLR--------NSVNLINVGSVHTNSIPPVLRKIALKEGFEIDEKV 183

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
              I       L  A       D  +L+ G  I    A E+
Sbjct: 184 IKTIASHAGGDLRAAIN-----DLQSLATGGSIEVEDAKEL 219


>gi|302349009|ref|YP_003816647.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
 gi|302329421|gb|ADL19616.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
          Length = 736

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + ++L GP G+GK+ LA   +++  +   +               + L  +  + ++ 
Sbjct: 226 PPKGILLYGPPGTGKTLLAKALANEIGAYFIAINGPEIMSKFYGESEERLREVFKEAQEN 285

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I +    +++ A   P      
Sbjct: 286 APSIIFIDEIDSIAPKREEVTGEVEKRVVAQLLTLMDGIQERGKVIVIGATNRPEDLD-- 343

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD     +++      R + +D  +
Sbjct: 344 -PALRRPGRFDREIEIRPPDKQGRLEILQVHT--RNMPLDSDV 383



 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 502 PPKGVLLFGPPGTGKTMLAKAVATESGANFIA 533


>gi|73971212|ref|XP_866054.1| PREDICTED: similar to valosin-containing protein isoform 4 [Canis
           familiaris]
          Length = 761

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 192 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 251

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 252 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 311

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 312 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 354



 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 465 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 521


>gi|71663369|ref|XP_818678.1| transitional endoplasmic reticulum ATPase [Trypanosoma cruzi strain
           CL Brener]
 gi|70883943|gb|EAN96827.1| transitional endoplasmic reticulum ATPase, putative [Trypanosoma
           cruzi]
          Length = 778

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 33/164 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP GSGK+ +A   ++++ +  F                 N+ K+ +    +
Sbjct: 225 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRKAFEEAEKN 284

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 285 APSIVFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGLKTRSQVIVMAATNRPNSID-- 342

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD    +++     + ++     +
Sbjct: 343 -PALR-RFGRFDREIDIGVPDDIGRLEILRIHTKNMKLDPGVDV 384



 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+  GP G GK+ LA   + + ++   S     L ++     +  + +  D  
Sbjct: 498 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 554


>gi|312134849|ref|YP_004002187.1| aaa atpase [Caldicellulosiruptor owensensis OL]
 gi|311774900|gb|ADQ04387.1| AAA ATPase [Caldicellulosiruptor owensensis OL]
          Length = 266

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 30/143 (20%)

Query: 40  RDDLLVHSAIE----QAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRF 93
            ++ +V    E     A+     W     +   ++L G  G+GKS LA   ++K      
Sbjct: 77  FENFIVDDENEKYYKLALNYCRRWQEMKQKNIGLLLWGLPGTGKSYLAFCIANKLIEQLI 136

Query: 94  SNIAKSL-------------------DSILIDTRKPVLLEDIDLLDFND-----TQLFHI 129
             IA S                      I+   R   LL   DL   N+      +L+ +
Sbjct: 137 PVIAISSIGFLNMLKQTYSNYGQEGEAEIIAMFRNASLLVLDDLGAENETGWAKEKLYEL 196

Query: 130 INSIHQYDSSLLMTARTFPVSWG 152
           I+  ++    L++T    P    
Sbjct: 197 IDFRYRDKKPLIVTTNLTPDQLK 219


>gi|295396093|ref|ZP_06806276.1| AAA family ATPase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971034|gb|EFG46926.1| AAA family ATPase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 460

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK---------PVL 112
           VIL GP G GK+ +A+  S             +   K +  ++ + R+          + 
Sbjct: 58  VILYGPPGVGKTTIAHAVSHAEGRRFVELSAITAGVKDVREVIENARRDREMRGLTTVLF 117

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           L++I          L        +    +L+ A T   S+ V  P L SR   + V+++ 
Sbjct: 118 LDEIHRFSKAQQDALL----PAVENRLVVLVAATTENPSFSVIAP-LVSR---SLVLQLK 169

Query: 172 LPDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQ 203
              ++ L  ++ +  +D R +     + ++   YIV 
Sbjct: 170 PLTEEHLRTLVTRAVSDPRGLAGQFELSEEALDYIVS 206


>gi|27544704|dbj|BAC55047.1| DnaA [Mycobacterium kansasii]
          Length = 192

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83
             + D  ++ ++   A     +    P+R    + + G SG GK+ L + 
Sbjct: 125 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 174


>gi|326920433|ref|XP_003206478.1| PREDICTED: 26S protease regulatory subunit 6A-like, partial
           [Meleagris gallopavo]
          Length = 394

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 174 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 233

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 234 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 293

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 294 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 347

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 348 GAQCKAVCVEAGMIALRRGAT 368


>gi|210633878|ref|ZP_03297893.1| hypothetical protein COLSTE_01810 [Collinsella stercoris DSM 13279]
 gi|210159047|gb|EEA90018.1| hypothetical protein COLSTE_01810 [Collinsella stercoris DSM 13279]
          Length = 446

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 34/187 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112
           VIL GP+G+GK+ LA+I +  ++S      A +                 ++ D R  + 
Sbjct: 61  VILYGPAGTGKTTLAHIIAAHTKSEFVEVSAVTGTVKDLRREIDEAKHRLMMFDRRTILF 120

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I          L H      +  + +++ A T    + V    L SR   + VV++ 
Sbjct: 121 IDEIHRFSRSQQDALLH----AVENRTVVMIGATTENPYFEVNAA-LLSR---SRVVELE 172

Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
              D  +E+++ +  +    +     +  ++ + I        + A      +  L L+ 
Sbjct: 173 HLSDADVERLVRRALSAPEGLAGRYAVSDEVVSAICT------LAAGDGRSSLTTLELAS 226

Query: 227 GMGITRS 233
            + +TR 
Sbjct: 227 EIALTRP 233


>gi|212542167|ref|XP_002151238.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
 gi|210066145|gb|EEA20238.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
          Length = 534

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 80/219 (36%), Gaps = 33/219 (15%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94
           LV         LI+         +IL G +G+GK+ +A + +    S             
Sbjct: 142 LVGP-NGILRSLIEQDR---VPSMILWGGAGTGKTTIARVIACMVGSRFVEINSTTSGIA 197

Query: 95  ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                 A++ + + +  RK +L  ++I         +  ++  + +     L+ A T   
Sbjct: 198 ECKKIFAEARNELGLTGRKTILFCDEIHRFSKTQQDV--LLGPV-ESGVVTLIAATTENP 254

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQ 203
           S+ V    L SR        +    DD L  ++ +  A           +D +L  Y+  
Sbjct: 255 SFKVQNA-LLSR---CRTFTLEKLTDDDLTSILKRALATEGSSYSPSELVDDELIRYLAT 310

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +     A  L++    + LS   G+T+++  + L +T
Sbjct: 311 FSDGDARTALNLLEL--AMGLSNRPGMTKAVLKKSLTKT 347


>gi|55742322|ref|NP_001006786.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Xenopus
           (Silurana) tropicalis]
 gi|49522638|gb|AAH75596.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Xenopus
           (Silurana) tropicalis]
          Length = 423

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397


>gi|11095436|gb|AAG29873.1| valosin-containing protein [Homo sapiens]
          Length = 307

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 175 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 234

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 235 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 294

Query: 155 L 155
           L
Sbjct: 295 L 295


>gi|15602122|ref|NP_245194.1| recombination factor protein RarA [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720486|gb|AAK02341.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 445

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 83/205 (40%), Gaps = 39/205 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +                  I ++ ++ L + R  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAHQIHADVERISAVTSGIKEIREAIERAKENRLAERRTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAAT 166
           +++   + +    F  HI     +  + + + A T   S+ +    L SR     LK+ +
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSRAKVYILKSLS 166

Query: 167 VVKISLPDDDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
             +I+   +   + ++     +R +      +++ +   + + +      A   ++ M +
Sbjct: 167 TQEIT---EVLKQALLD---EERGLGKVRFVLEENVLECLAEYVNGDARLALNSLELMAD 220

Query: 222 LA--LSRGMGITRSLAAEVLKETQQ 244
           +A     G  +T SL   VL E Q 
Sbjct: 221 MAEETEAGKALTLSLLKNVLGERQA 245


>gi|294506355|ref|YP_003570413.1| ATPase [Salinibacter ruber M8]
 gi|294342683|emb|CBH23461.1| putative ATPase [Salinibacter ruber M8]
          Length = 341

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 31/143 (21%)

Query: 46  HSAIEQAVRL---IDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKS 88
             A+  A      +   PSW  R+              + LVGP+G+GK+ L     +  
Sbjct: 25  AEALRVARAFVAELRRTPSWTERLRALLGVGDERLPQGLYLVGPAGTGKTHLLAATCNAL 84

Query: 89  RSTRFSNI------------AKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQ 135
              R                  +    L D      L+++++ D  N+ +L  ++ ++  
Sbjct: 85  MPERACAFLHSSTLFRQTEPPDAFAHRLADQYAVCCLDEVEIDDPANEMRLAGVMKTLAA 144

Query: 136 YDSSLLMTARTFPVS-WGVCLPD 157
            D  LL T+   P       L D
Sbjct: 145 RDVPLLATSNVAPEEYLATQLGD 167


>gi|41393119|ref|NP_958889.1| transitional endoplasmic reticulum ATPase [Danio rerio]
 gi|82188427|sp|Q7ZU99|TERA_DANRE RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=Protein CDC48; AltName:
           Full=Valosin-containing protein; Short=VCP
 gi|29791670|gb|AAH50488.1| Valosin containing protein [Danio rerio]
 gi|45501133|gb|AAH67384.1| Valosin containing protein [Danio rerio]
 gi|46403223|gb|AAS92631.1| valosin-containing protein [Danio rerio]
 gi|122891315|emb|CAM13143.1| valosin containing protein [Danio rerio]
          Length = 806

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|327288855|ref|XP_003229140.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Anolis
           carolinensis]
          Length = 807

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|325066414|ref|ZP_08125087.1| recombination factor protein RarA [Actinomyces oris K20]
          Length = 400

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 24/172 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ +A + +D++    F  ++ +   +  D RK              T L
Sbjct: 9   IILWGPPGCGKTTIARLLADRTG-LVFEQVSATFSGVA-DLRKVFAAAARRREIGQGTLL 66

Query: 127 F----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N           +  + +L+  T              L SR     V+ +  
Sbjct: 67  FVDEIHRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNGA---LLSR---CQVMVLRR 120

Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            D+  L +++ +  +   R + + +     ++   +    +   +V+++   
Sbjct: 121 LDEAALTELLARAESLMGRSLALTEDARTALLSMADGDGRYLLGMVEQVLAA 172


>gi|26326751|dbj|BAC27119.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRQFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|326527541|dbj|BAK08045.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 813

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 68/175 (38%), Gaps = 38/175 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 245 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 304

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 305 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 362

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
            P L  R  +    + I +PD+    +V+      + + + + +    ++ + R 
Sbjct: 363 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDVE---LEHISRD 410



 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D    
Sbjct: 518 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARG 576


>gi|27544734|dbj|BAC55062.1| DnaA [Mycobacterium ulcerans]
          Length = 188

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83
             + D  ++ ++   A     +    P+R    + + G SG GK+ L + 
Sbjct: 121 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 170


>gi|322820539|gb|EFZ27127.1| transitional endoplasmic reticulum ATPase, putative [Trypanosoma
           cruzi]
          Length = 778

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 33/164 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP GSGK+ +A   ++++ +  F                 N+ K+ +    +
Sbjct: 225 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRKAFEEAEKN 284

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 285 APSIVFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGLKTRSQVIVMAATNRPNSID-- 342

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD    +++     + ++     +
Sbjct: 343 -PALR-RFGRFDREIDIGVPDDIGRLEILRIHTKNMKLDPGVDV 384



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+  GP G GK+ LA   + + ++   S     L ++     +  + +  D  
Sbjct: 498 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 554


>gi|309792400|ref|ZP_07686867.1| IstB domain protein ATP-binding protein [Oscillochloris trichoides
           DG6]
 gi|308225555|gb|EFO79316.1| IstB domain protein ATP-binding protein [Oscillochloris trichoides
           DG6]
          Length = 234

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 31/142 (21%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS---------------- 88
           V  A  +AV    +   W    +IL G  G GK+ LA   +++                 
Sbjct: 56  VARAFSRAVEFARNPRGW----LILYGGYGCGKTHLAAAIANEVLKMNTEVLFTVVPDLL 111

Query: 89  ---RSTRFSNIAKSLDSILIDTRKP--VLLEDI---DLLDFNDTQLFHIINSIHQYDSSL 140
              RST   +   + D      R    ++L+D+   +   +   +L+ IIN  + Y    
Sbjct: 112 DHLRSTFGPHSEVAYDERFDQVRGAKLLILDDLGTENATPWAREKLYQIINHRYNYALPT 171

Query: 141 LMTARTFPVSWGVCLPDLCSRL 162
           ++T+   P       P + SR+
Sbjct: 172 VITSNREPKDID---PRILSRM 190


>gi|154686894|ref|YP_001422055.1| recombination factor protein RarA [Bacillus amyloliquefaciens
           FZB42]
 gi|154352745|gb|ABS74824.1| YrvN [Bacillus amyloliquefaciens FZB42]
          Length = 422

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 69/197 (35%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTRFS--NIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  +        +   +  ++   +    +  +  ++L+++ 
Sbjct: 41  MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDMEIVVQEAKMSGQVILILDEVH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD              +    +L+ A T      +  P + SR     + ++     D 
Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPDL 153

Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-- 228
           +++ + +   D  R +      +D     +  Q            ++ ++   LS     
Sbjct: 154 IKQALERALTDEHRGLGSYSVSVDDDAMDHFAQGCG---GDVRSALNALELAVLSTKESS 210

Query: 229 ----GITRSLAAEVLKE 241
                ITR  A E L++
Sbjct: 211 DGTIRITRETAEECLQK 227


>gi|126332736|ref|XP_001370525.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 531

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 311 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 370

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 371 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 430

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 431 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 484

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 485 GAQCKAVCVEAGMIALRRGAT 505


>gi|57234675|ref|YP_181282.1| ATP-binding protein [Dehalococcoides ethenogenes 195]
 gi|57225123|gb|AAW40180.1| ATP-binding protein, DnaC family [Dehalococcoides ethenogenes 195]
          Length = 426

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 31/156 (19%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--- 106
            QA     ++ S P+  ++  GPSG+GK+ LA   ++K  +     + K    ++ D   
Sbjct: 66  SQAYNAALNFASNPAGWLVFSGPSGAGKTHLAAAIANKRLAMGQPVLYKRASELIDDLKK 125

Query: 107 ------------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145
                                 ++++D+ +   +D    +L  ++      +   ++T  
Sbjct: 126 SFEPDSEAAYSQSFDILKNAPLLIIDDLTVQSGSDWSKEKLDQLLTYRFSQELPTIITLS 185

Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISL----PDDDF 177
           T        +    SRL   +V +I      P+D  
Sbjct: 186 TPINELDSRI---QSRLLDKSVSRIYPVASNPEDTL 218



 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 30/152 (19%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----- 104
           E A  L   +   P   ++  G +G GK+ LA+   ++        +   +   L     
Sbjct: 253 EAAYNLALEFSRNPESWLVFQGETGCGKTHLASAIVNERYRQGKPAMFVVVPEFLDHLRS 312

Query: 105 ----------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
                           +   K ++L+D        +   +L+ +IN  +      ++T R
Sbjct: 313 TFSPESKTSYDQMFDAVKNAKLLVLDDFGEQSSTPWAQEKLYQVINYRYNRRLPTVITTR 372

Query: 146 TFPVSWGVCLPDLCSRL---KAATVVKISLPD 174
                  V +    SR    + + V  I+ P+
Sbjct: 373 CPLSEIEVAI---SSRFVDPQISMVFNITAPN 401


>gi|326917076|ref|XP_003204830.1| PREDICTED: ATPase WRNIP1-like [Meleagris gallopavo]
          Length = 440

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 28/148 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  S   +      + D+     N+ 
Sbjct: 36  PSIILWGPPGCGKTTLAHIIANSSKKKGMRFVTLSATSAKTND-----VRDVISQAQNEK 90

Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +LF           H  N   Q          +  L+ A T   S+ V    L SR    
Sbjct: 91  RLFKRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAA-LLSR---C 146

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193
            V+ +     + +E ++++      + +
Sbjct: 147 RVIVLEKLSVEAMEAILLRAVKSLGVQV 174


>gi|312865956|ref|ZP_07726177.1| replication-associated recombination protein A [Streptococcus
           downei F0415]
 gi|311098360|gb|EFQ56583.1| replication-associated recombination protein A [Streptococcus
           downei F0415]
          Length = 449

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 82/251 (32%), Gaps = 49/251 (19%)

Query: 9   SFFVPDKQKNDQ--PKNKEEQLFFSFPRCLGISRDDL-----LVHSAIEQAVRLIDSWPS 61
           S F  D QK+     + + + L            DD      LV         +I+    
Sbjct: 5   SLFDADMQKSAPLASRMRPQSL------------DDFVGQEHLVGQGKFL-REMIEKDQ- 50

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP--------- 110
                +I  GP G GK+ LA I + K+ +    FS +   +  I     +          
Sbjct: 51  --VSSMIFWGPPGVGKTTLAEIIAKKTNAKFITFSAVMNGIKEIRTIMNEAEENRSFGEK 108

Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
             V +++I   +      F       +  S +L+ A T   S+ V    L SR   A V 
Sbjct: 109 TIVFIDEIHRFNKAQQDAFLPY---VEKGSIILIGATTENPSFEVNSA-LLSR---ARVF 161

Query: 169 KISLPD--D--DFLEKVIVKMFADRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            +      D  + L++V+    A   I   I  +L   +    +     A   ++ +   
Sbjct: 162 VLKPLAKGDILNLLKRVLRSEDAFPGIMVEISDELLERLAAYADGDARTALNTLEMLVLN 221

Query: 223 ALSRGMGITRS 233
           +      +T  
Sbjct: 222 SDKEDDKVTIR 232


>gi|74139564|dbj|BAE40919.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|45357885|ref|NP_987442.1| replication factor C large subunit [Methanococcus maripaludis S2]
 gi|50400880|sp|Q6M0E9|RFCL_METMP RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|45047445|emb|CAF29878.1| replication factor C, large subunit [Methanococcus maripaludis S2]
          Length = 486

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 44/221 (19%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVV--------ILVGPSGSGKSCLANIWSDKSRSTRFSNI 96
           V    +    LI+    W   ++        +L GP GSGK+ LA   ++          
Sbjct: 16  VAGHNKTKQALIE----WIESIIGGQNQKPILLAGPPGSGKTTLAYAIANDYAFDVIELN 71

Query: 97  A---------------KSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSS 139
           A                +    L   R  ++L+++D L  ND    +  II  +   ++ 
Sbjct: 72  ASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENP 131

Query: 140 LLMTART--FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           +++TA     P    +          +  ++ +     + +  V+ ++       ID+K+
Sbjct: 132 VILTANDVYKPALMTLR--------NSVNLINVGSVHTNSIPPVLRRIALKEGFEIDEKI 183

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
              I      S       ++  D  +L+ G  I    A E+
Sbjct: 184 IKMIASH---SGGDLRAAIN--DLQSLATGGSIEIEDAKEL 219


>gi|34740143|dbj|BAC87740.1| CDC48 [Danio rerio]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|110834153|ref|YP_693012.1| recombination factor protein RarA [Alcanivorax borkumensis SK2]
 gi|110647264|emb|CAL16740.1| ATPase AAA family related to the helicase subunit of the Holliday
           junction resolvase [Alcanivorax borkumensis SK2]
          Length = 443

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 25/195 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA I +    +        ++ S + D R  V    I L     T L
Sbjct: 53  MILWGPPGTGKTTLALIMAQTVDAAFI--TLSAVLSGVKDIRAAVEQAQILLGQGRRTVL 110

Query: 127 F----HIINSIHQYD----------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q            + +  T              L SR   A V ++  
Sbjct: 111 FVDEVHRFNKAQQDAFLPHVEEGTITFIGATTENPSFELNNA---LLSR---ARVYRLRA 164

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
              + L  ++V+   D     + +D +    ++   +        +++   +LA      
Sbjct: 165 LAPEDLSGLLVRALHDPALNGMQLDAQATELLLNYADGDARRLLNMLEVAADLADVDVPN 224

Query: 230 ITRSLAAEVLKETQQ 244
           I   L  EVL++  +
Sbjct: 225 IGADLMREVLRDAVR 239


>gi|26350783|dbj|BAC39028.1| unnamed protein product [Mus musculus]
          Length = 723

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 154 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 213

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 214 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 273

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 274 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 316



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 427 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 483


>gi|77735541|ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus]
 gi|122140828|sp|Q3ZBT1|TERA_BOVIN RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           AltName: Full=Valosin-containing protein; Short=VCP
 gi|73586667|gb|AAI03126.1| Valosin-containing protein [Bos taurus]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|313893197|ref|ZP_07826774.1| ATPase, AAA family [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442550|gb|EFR60965.1| ATPase, AAA family [Veillonella sp. oral taxon 158 str. F0412]
          Length = 433

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++  GP G+GK+ LA I +  S S   +  A +     + T    ++ED      +  
Sbjct: 51  PSMLFYGPCGTGKTTLAGIIAKMSNSHFVNLNATNAGIGELRT----IIEDARKRVRSLQ 106

Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           Q   LF    H  N           +  + +L+ A T    + V  P L SRL+   ++ 
Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199
           +       + +++ +   D       R++ +  ++  
Sbjct: 163 LEALTPKAIGQILRRAITDEEVGLGKRRLQVTDEVLE 199


>gi|242008814|ref|XP_002425193.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212508909|gb|EEB12455.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 804

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 54/202 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ + +    ++M A   P S  V 
Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDVA 354

Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           L              PD   RL+        + L DD  LE++     A+    +   LA
Sbjct: 355 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLADDVDLEQI----AAETHGHVGADLA 410

Query: 199 AYIVQRMERSLVFAEKLVDKMD 220
           +        S    +++ +KMD
Sbjct: 411 SLC------SESALQQIREKMD 426



 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 564


>gi|73971210|ref|XP_852626.1| PREDICTED: similar to valosin-containing protein isoform 3 [Canis
           familiaris]
 gi|301787635|ref|XP_002929233.1| PREDICTED: transitional endoplasmic reticulum ATPase-like
           [Ailuropoda melanoleuca]
 gi|296484691|gb|DAA26806.1| transitional endoplasmic reticulum ATPase [Bos taurus]
 gi|225450|prf||1303334A valosin precursor
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|296190199|ref|XP_002743098.1| PREDICTED: transitional endoplasmic reticulum ATPase-like
           [Callithrix jacchus]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|291242207|ref|XP_002740980.1| PREDICTED: valosin-containing protein-like [Saccoglossus
           kowalevskii]
          Length = 809

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNSIDTA 356

Query: 155 L 155
           L
Sbjct: 357 L 357



 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 510 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 566


>gi|238053995|ref|NP_001153918.1| proteasome 26S subunit ATPase 3 [Oryzias latipes]
 gi|226088560|dbj|BAH37025.1| proteasome 26S subunit ATPase 3 [Oryzias latipes]
          Length = 427

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 207 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 266

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q +  + ++ A       
Sbjct: 267 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDIL 326

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 327 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 380

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 381 GAQCKAVCVEAGMIALRRGAT 401


>gi|149609398|ref|XP_001520419.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 805

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 236 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 295

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 296 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 355

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 356 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 398



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 509 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 565


>gi|111305821|gb|AAI21795.1| Valosin-containing protein [Homo sapiens]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|73971232|ref|XP_866203.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 13 [Canis
           familiaris]
          Length = 810

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|73971230|ref|XP_866191.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 12 [Canis
           familiaris]
          Length = 819

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|74198702|dbj|BAE39824.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|17865351|ref|NP_446316.1| transitional endoplasmic reticulum ATPase [Rattus norvegicus]
 gi|1174637|sp|P46462|TERA_RAT RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           AltName: Full=Valosin-containing protein; Short=VCP
 gi|641973|gb|AAC52154.1| transitional endoplasmic reticulum ATPase [Rattus norvegicus]
 gi|38014694|gb|AAH60518.1| Valosin-containing protein [Rattus norvegicus]
 gi|149045717|gb|EDL98717.1| valosin-containing protein, isoform CRA_b [Rattus norvegicus]
 gi|1093322|prf||2103265A transitional endoplasmic reticulum ATPase
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|317473057|ref|ZP_07932357.1| ATPase [Anaerostipes sp. 3_2_56FAA]
 gi|316899486|gb|EFV21500.1| ATPase [Anaerostipes sp. 3_2_56FAA]
          Length = 439

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 62/170 (36%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + +  +++      A +     +        E + +     T L
Sbjct: 55  IIFYGPPGTGKTTLARVIAQTTQANFVQMNATTSGKKEMQEAVKEAKEALGMFQKK-TIL 113

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + V ++   +
Sbjct: 114 FIDEIHRFNKAQQDFLLPFVEDGTIILIGATTENPYFEVNQA-LISR---SNVFELKSLE 169

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            + ++K++V+   D        +  I  +   ++    E     A   V+
Sbjct: 170 PEDIKKLLVRAVTDDEKGMGIYRAKITDEALDFLADMAEGDARSALNAVE 219


>gi|218282978|ref|ZP_03489080.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989]
 gi|218216172|gb|EEC89710.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989]
          Length = 453

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 27/163 (16%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLD 101
           LV        ++I+         +I  GP G GK+ LA I + +++S    FS +   + 
Sbjct: 34  LVAKGNLL-WQMIEHDQ---VTSMIFWGPPGVGKTTLARIIAHQTKSYFVDFSAVTSGIK 89

Query: 102 SILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPV 149
            I    ++     D        T LF    H  N           +  S +L+ A T   
Sbjct: 90  EIKEVMKQA----DTRRALGQKTILFVDEIHRFNKAQQDAFLPYVEKGSIILIGATTENP 145

Query: 150 SWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVKMFADRQI 191
           S+ +    L SR     V  ++  + DD  + +I  + + + +
Sbjct: 146 SFEINSA-LLSR---CRVFVLNSLNTDDLKDLIIRAISSSKGL 184


>gi|156086698|ref|XP_001610758.1| cell division control protein 48 [Babesia bovis T2Bo]
 gi|154798011|gb|EDO07190.1| cell division control protein 48, putative [Babesia bovis]
          Length = 804

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 61/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                SN+ ++      +
Sbjct: 247 PPRGVLLYGPPGSGKTLIARAVANETGAYFFLINGPEVMSKMAGEAESNLRRAFAEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +      +++ A          
Sbjct: 307 APAIIFIDEVDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIAAT---NRQNSI 363

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD    +++      R + +  ++
Sbjct: 364 DPALR-RFGRFDKEIDIGVPDDTGRLEIL--KIHTRNMKLAPEV 404



 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D  
Sbjct: 520 PSRGVLFYGPPGCGKTLLAKAVASECSANFISIKGPELLTMWFGESEANVREVFDKA 576


>gi|124021978|ref|YP_001016285.1| recombination factor protein RarA/unknown domain fusion protein
           [Prochlorococcus marinus str. MIT 9303]
 gi|123962264|gb|ABM77020.1| putative ATPase, AAA family protein [Prochlorococcus marinus str.
           MIT 9303]
          Length = 735

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 77/201 (38%), Gaps = 35/201 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +  +R+   S  A       +        + ++      T L
Sbjct: 57  LLLHGPPGVGKTTLARIIAGHTRANFSSLNAVLAGVKELRQEVDAAKQRLERHGLR-TIL 115

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  +  L+ A T    + V    L SR   + + ++   +
Sbjct: 116 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKA-LVSR---SRLFRLQALE 171

Query: 175 DDFLEKVI-------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           ++ L +++        + + DRQ+ +    A ++V         A  L++ +  LA+   
Sbjct: 172 NEDLHRLLKHALQDCERGYGDRQVMLSTAAANHLVNVAN---GDARSLLNAL-ELAVESS 227

Query: 228 MG-------ITRSLAAEVLKE 241
                    I  ++A E ++E
Sbjct: 228 RPNEQGSIHINLAIAEESIQE 248


>gi|74185161|dbj|BAE39181.1| unnamed protein product [Mus musculus]
          Length = 502

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 282 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 341

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 342 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 401

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 402 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 455

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 456 GAQCKAVCVEAGMIALRRGAT 476


>gi|56963320|ref|YP_175051.1| Holliday junction DNA helicase RuvB [Bacillus clausii KSM-K16]
 gi|68715275|sp|Q5WHR5|RUVB_BACSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56909563|dbj|BAD64090.1| holliday junction DNA helicase RuvB [Bacillus clausii KSM-K16]
          Length = 333

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 29/190 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I + +      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLAAIIAAEMGGELRTTSGPAIERSGDLAAILTALEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPDDDFL 178
            H +N   +    +L      P     CL       P   S RL       +        
Sbjct: 114 -HRLNRTVEE---VLY-----PAMEDFCLDIVIGKGPTARSVRLDLPPFTLVGA---TTR 161

Query: 179 EKVIVKMFADRQIFIDKKLAAY-----IVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
             ++     DR   + +    Y     + Q +ERS    +  ++    L L+R    T  
Sbjct: 162 AGMLSSPLRDRFGVMAR--LEYYKPEELAQIVERSATVFQATLEPSAALELARRSRGTPR 219

Query: 234 LAAEVLKETQ 243
           +A  +L+  +
Sbjct: 220 IANRLLRRVR 229


>gi|55217|emb|CAA78412.1| murine valosin-containing protein [Mus musculus]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|47523626|ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa]
 gi|1174636|sp|P03974|TERA_PIG RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           AltName: Full=Valosin-containing protein; Short=VCP
 gi|164726|gb|AAA31142.1| valosin-containing protein [Sus scrofa]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|321461136|gb|EFX72171.1| hypothetical protein DAPPUDRAFT_308570 [Daphnia pulex]
          Length = 802

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  +                SN+ K+ +    +
Sbjct: 235 PPRGILLFGPPGTGKTLIARAVANETGAFFYLINGPEIMSKLAGESESNLRKAFEEAEKN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNSIDAA 354

Query: 155 L--------------PDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
           L              PD   RL+   V++I      L DD  LE+V     A+    +  
Sbjct: 355 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEQV----AAETHGHVGA 407

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            +AA        S    +++ +KMD
Sbjct: 408 DIAALC------SEAALQQIREKMD 426



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 564


>gi|270358348|gb|ACZ81397.1| 26S protease regulatory subunit 6A [Equus caballus]
          Length = 403

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 183 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 242

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 243 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 302

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 303 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 356

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 357 GAQCKAVCVEAGMIALRRGAT 377


>gi|265755703|ref|ZP_06090324.1| transposase TnpB [Bacteroides sp. 3_1_33FAA]
 gi|319641359|ref|ZP_07996054.1| insertion sequence IS21-like ATP-binding protein [Bacteroides sp.
           3_1_40A]
 gi|263234309|gb|EEZ19902.1| transposase TnpB [Bacteroides sp. 3_1_33FAA]
 gi|317387040|gb|EFV67924.1| insertion sequence IS21-like ATP-binding protein [Bacteroides sp.
           3_1_40A]
          Length = 253

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 24/117 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GPSG+GK+ LA      +    +     +++ I+                  I   
Sbjct: 103 LILMGPSGTGKTFLAAGLVFDAVKAGYKAYLMTMEDIVNCLRLKDISTPAMMTYNKILRA 162

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS 160
           + + ++DI L        T  F++IN++H+  +S+++T    P  W   L D  L S
Sbjct: 163 QLLAIDDIMLFPVKREEATAFFNLINTLHE-KTSIIITTNKAPTEWVETLNDEILAS 218


>gi|148670553|gb|EDL02500.1| valosin containing protein, isoform CRA_a [Mus musculus]
          Length = 814

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|58040097|ref|YP_192061.1| recombination factor protein RarA [Gluconobacter oxydans 621H]
 gi|58002511|gb|AAW61405.1| ATPase associated with chromosome architecture/replication
           [Gluconobacter oxydans 621H]
          Length = 470

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 26/187 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL G  G GK+ +A + + ++    +S I+     +    R     +         T L
Sbjct: 90  LILWGGPGCGKTTIARLLAGRAG-LFYSQISAVFSGVADLRRAFEEADKKQAATGKGTLL 148

Query: 127 F----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q          ++++   T      +       L SR     V+ ++ 
Sbjct: 149 FVDEIHRFNRAQQDGFLPYVERGTVVLVGATTENPSFALNAA---LLSR---CQVLVLNR 202

Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            DD  LE ++V    +  R + +D +  A +    +    +   +V+++  +AL     +
Sbjct: 203 LDDASLESLLVHAEEEVGRPLPLDPEARASLRAMADGDGRYLLNMVEQL--VALDPSKVL 260

Query: 231 T-RSLAA 236
           T R LAA
Sbjct: 261 TPRDLAA 267


>gi|6005942|ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens]
 gi|225543319|ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus]
 gi|291383033|ref|XP_002708056.1| PREDICTED: valosin-containing protein [Oryctolagus cuniculus]
 gi|297684123|ref|XP_002819702.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Pongo
           abelii]
 gi|332831823|ref|XP_003312111.1| PREDICTED: transitional endoplasmic reticulum ATPase [Pan
           troglodytes]
 gi|6094447|sp|P55072|TERA_HUMAN RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           AltName: Full=Valosin-containing protein; Short=VCP
 gi|146291078|sp|Q01853|TERA_MOUSE RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           AltName: Full=Valosin-containing protein; Short=VCP
 gi|185177986|pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
 gi|185177987|pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
 gi|185177988|pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
 gi|185177989|pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 gi|185177990|pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 gi|185177991|pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 gi|185177992|pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
 gi|185177993|pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
 gi|185177994|pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
 gi|185177995|pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
 gi|2984586|gb|AAC07984.1| TERA_HUMAN [Homo sapiens]
 gi|5410290|gb|AAD43016.1| transitional endoplasmic reticulum ATPase [Homo sapiens]
 gi|29144873|gb|AAH43053.1| Valosin containing protein [Mus musculus]
 gi|29144989|gb|AAH49114.1| Valosin containing protein [Mus musculus]
 gi|55662798|emb|CAH70993.1| valosin-containing protein [Homo sapiens]
 gi|74140012|dbj|BAE31840.1| unnamed protein product [Mus musculus]
 gi|74185284|dbj|BAE30119.1| unnamed protein product [Mus musculus]
 gi|74191623|dbj|BAE30383.1| unnamed protein product [Mus musculus]
 gi|74197192|dbj|BAE35141.1| unnamed protein product [Mus musculus]
 gi|74211628|dbj|BAE29175.1| unnamed protein product [Mus musculus]
 gi|83405636|gb|AAI10914.1| Valosin-containing protein [Homo sapiens]
 gi|119578808|gb|EAW58404.1| valosin-containing protein, isoform CRA_b [Homo sapiens]
 gi|122889766|emb|CAM14316.1| valosin containing protein [Mus musculus]
 gi|168278060|dbj|BAG11008.1| transitional endoplasmic reticulum ATPase [synthetic construct]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|110638794|ref|YP_679003.1| recombination factor protein RarA [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281475|gb|ABG59661.1| ATPase, AAA family [Cytophaga hutchinsonii ATCC 33406]
          Length = 420

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 18/133 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLED 115
             +IL GP G GK+ LA + +             S+    + + + +   D +  + +++
Sbjct: 41  PSMILWGPPGVGKTTLAQLLAKTVGLPFYTLSAISSGVKEVREVIANAQTDGKAVLFIDE 100

Query: 116 IDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           I     +    L        +  +  L+ A T   S+ V +P L SR     V  +    
Sbjct: 101 IHRFSKSQQDALL----GAVEKGTIQLIGATTENPSFEV-IPALLSR---CQVYVLQPLS 152

Query: 175 DDFLEKVIVKMFA 187
           ++ L +++     
Sbjct: 153 EEELVELMRSALK 165


>gi|258645316|ref|ZP_05732785.1| ATPase, AAA family [Dialister invisus DSM 15470]
 gi|260402665|gb|EEW96212.1| ATPase, AAA family [Dialister invisus DSM 15470]
          Length = 474

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 30/165 (18%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108
                ++I+         ++L GP G GK+ +A++ +  ++       A S  +  I   
Sbjct: 79  NSFLYKMIERD---TVPSLLLFGPPGCGKTTIASVIAKMTKFKFLKLNATSSGAKEIRDI 135

Query: 109 KPVLLEDIDLLD------FNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWG 152
            P   +++           ++    H  N           +  + +L+  T         
Sbjct: 136 VPAAQKELQYYGRRTIVFIDEV---HRFNRAQQDLLLPYVENGTFILIGATTENPYFELN 192

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQIFIDK 195
                L SR++   ++ +     D +  ++ K   D  + + +  
Sbjct: 193 GS---LLSRIR---LIHLKPLSIDSIVLILQKALTDKNKGLGMHD 231


>gi|254514312|ref|ZP_05126373.1| AAA ATPase, central domain protein [gamma proteobacterium NOR5-3]
 gi|219676555|gb|EED32920.1| AAA ATPase, central domain protein [gamma proteobacterium NOR5-3]
          Length = 411

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 31/178 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   +IL GP G GK+ LA +  D S S      A       I  R+ V + + +     
Sbjct: 24  PLHSMILWGPPGVGKTTLAQLLCDASDSRMLKLSAVMDGVKAI--REAVAVGEAERASGR 81

Query: 123 DTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVV 168
              LF    H  N           +  +  L+  T              L SR   A V 
Sbjct: 82  QCVLFVDEVHRFNKSQQDAFLPFVENGTLTLIGATTENPAFELNSA---LLSR---ARVY 135

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF---AEKLVDKMDNLA 223
           ++     D L  ++ +   +  + ++       +QR   +L     A ++++ ++  A
Sbjct: 136 RLRSLSVDELVMILHRGEIEVGLELND------LQRQRLALAADGDARRVLNLLELAA 187


>gi|156839538|ref|XP_001643459.1| hypothetical protein Kpol_483p20 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114070|gb|EDO15601.1| hypothetical protein Kpol_483p20 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 783

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 32/155 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P R V+L GP G+GK+ L    ++ S +   +    S+ S  +   +             
Sbjct: 279 PPRGVLLHGPPGTGKTMLLRCVANSSNAHVLTINGPSIVSKYLGETEAKLREIFDEAQKY 338

Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID L  N                L  +++ +      +++ A   P S   
Sbjct: 339 QPSIIFIDEIDSLAPNRANDDSGEVESRVVATLLTLMDGMGGSGRLVVVAATNRPNS--- 395

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             P L    +    V+I +PD D    ++ K F+ 
Sbjct: 396 VDPALRRPGRFDQEVEIGIPDVDARFDILKKQFSR 430


>gi|74192715|dbj|BAE34876.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|298508317|pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
 gi|298508318|pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
 gi|298508319|pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
 gi|298508320|pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
 gi|298508321|pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
 gi|298508322|pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
          Length = 489

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>gi|220904438|ref|YP_002479750.1| recombination factor protein RarA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868737|gb|ACL49072.1| AAA ATPase central domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 407

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 14/162 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120
             ++  GP G GKS LA + +  +  T  R S     L  +   +   + ++L+++    
Sbjct: 39  PSLLFFGPPGCGKSTLALLLAKGTGKTFLRLSAPEAGLQHLRRSLSGIEILVLDELHRFS 98

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                 F  +  +   D +LL T    P  + V    L SRL    V+++       L +
Sbjct: 99  KAQQDFF--LPLVESGDLTLLATTTENPS-FSVTRQ-LLSRL---HVLRLRPLGRTELVE 151

Query: 181 VIVKMFADRQIFIDKKLAAYI--VQRME-RSLVFAEKLVDKM 219
           +  +   D Q+ +  +LA  +  V   + R+L+   + V  +
Sbjct: 152 LARRGAMDLQVEMPDELAELLAGVAHGDARTLLNLVEYVAAL 193


>gi|113206112|ref|NP_001038129.1| transitional endoplasmic reticulum ATPase [Gallus gallus]
 gi|53126280|emb|CAG30944.1| hypothetical protein RCJMB04_1c3 [Gallus gallus]
 gi|90990971|dbj|BAE92937.1| valosin containing protein [Gallus gallus]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|26390141|dbj|BAC25849.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|73971224|ref|XP_866152.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 10 [Canis
           familiaris]
          Length = 762

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 193 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 252

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 253 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 312

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 313 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 355



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 466 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 522


>gi|73971220|ref|XP_866121.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 8 [Canis
           familiaris]
          Length = 505

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>gi|73971218|ref|XP_866104.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 7 [Canis
           familiaris]
          Length = 451

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>gi|73971228|ref|XP_538712.2| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 1 [Canis
           familiaris]
          Length = 812

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|325526164|gb|EGD03808.1| recombination factor protein RarA [Burkholderia sp. TJI49]
          Length = 251

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 22/170 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G GK+ LA + +        +  A       I        +  D      T +
Sbjct: 50  MIFWGPPGVGKTTLARLTAQAFDCAFVALSAVLGGVKDIRAATARAQQAFD-GAGRRTIV 108

Query: 127 F----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N   Q          + + + A T   S+ V    L SR   A V  +   +
Sbjct: 109 FVDEIHRFNDTQQAALLPSVASGAVIFIGATTENPSFEVNSA-LLSR---AQVYVLQSLN 164

Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           DD + +++ +    A   +  D K    +V   +     A + ++ ++  
Sbjct: 165 DDEMRQLLRRAQEIALDGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211


>gi|67484218|ref|XP_657329.1| cell division cycle protein 48 [Entamoeba histolytica HM-1:IMSS]
 gi|56474515|gb|EAL51880.1| cell division cycle protein 48, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 794

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 67/164 (40%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G GK+ +A   ++++ +  F                SN+ ++ +    +
Sbjct: 225 PPRGILLYGPPGCGKTMIARAIANETGAFFFLINGPEIMSKMAGESESNLRRAFEEAEKN 284

Query: 107 TRKPVLLEDIDLLD------FND------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +         +      +QL  +++ +      +++ A   P +  V 
Sbjct: 285 SPAIIFIDEIDSIAPKRDKSGGEVERRVVSQLLTLMDGLKARSQVIVIAATNRPNTIDVA 344

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + + +PD +  ++++      +++ I   +
Sbjct: 345 LR----RFGRFDREIDLGIPDTEGRKEILQ--IHTKKMKIADDV 382


>gi|126334782|ref|XP_001368198.1| PREDICTED: similar to valosin [Monodelphis domestica]
          Length = 806

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|73971226|ref|XP_866167.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 11 [Canis
           familiaris]
          Length = 776

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|242399369|ref|YP_002994793.1| Pk-cdcA protein [Thermococcus sibiricus MM 739]
 gi|242265762|gb|ACS90444.1| Pk-cdcA protein [Thermococcus sibiricus MM 739]
          Length = 839

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 76/207 (36%), Gaps = 41/207 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  I  +  + 
Sbjct: 246 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLRDIFKEAEEN 305

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 306 APSIIFIDEIDAIAPKREEVTGEVEKRVVSQLLTLMDGLKSRGKVIVIGATNRPDALD-- 363

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQRME 206
            P L    +    +++ +PD    ++++      R + ++ +        +   +  R  
Sbjct: 364 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPLEPEYDKRSVLRVLNSLKNREA 420

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRS 233
                 E+++ K++N      + IT  
Sbjct: 421 FDKERIEEMIQKIENAKEESDIKITLK 447



 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 46/218 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + ++L GP G+GK+ LA   +++S +                   K +  I    R+ 
Sbjct: 581 PPKGILLYGPPGTGKTLLAKAVANESEANFIGIRGPEVLSKWVGESEKRIREIFRKARQA 640

Query: 111 ----VLLEDIDLLD---FND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V ++++D +      +          QL   ++ I +    +++ A   P      
Sbjct: 641 APTVVFIDEVDSIAPMRGGEGDRVTDRLINQLLTEMDGIEENSGVVVIAATNRPDILDPA 700

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSL 209
           L  L      RL     + +  PD+    +++ K+   R           + ++ E  S 
Sbjct: 701 L--LRPGRFDRL-----ILVPAPDEKARLEIL-KVHTRRVPLASDVSLQELAKKTEGYSG 752

Query: 210 VFAEKLVDKMDNLALSRGMGIT-RSL----AAEVLKET 242
                LV +   +AL R + IT R L    A E L++ 
Sbjct: 753 ADLAALVREAAFVALRRAVSITSRDLVEDQAEEFLEKL 790


>gi|156938218|ref|YP_001436014.1| ATPase AAA [Ignicoccus hospitalis KIN4/I]
 gi|156567202|gb|ABU82607.1| AAA family ATPase, CDC48 subfamily [Ignicoccus hospitalis KIN4/I]
          Length = 729

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + V+L GP G+GK+ LA   +++  +   +               + L  I  + R  
Sbjct: 222 PPKGVLLYGPPGTGKTMLAKALANEIGAYFIAINGPEIMSKYYGESEQRLREIFEEARKN 281

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 282 APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGRVVVIGATNRPDAID-- 339

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    + ++      R + + + +
Sbjct: 340 -PALRRPGRFDREIEIPPPDKRARKAILEVH--TRNVPLAEDV 379



 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S++   +
Sbjct: 498 PPKGILLFGPPGTGKTLLAKAAATESQANFIA 529


>gi|120598817|ref|YP_963391.1| recombination factor protein RarA [Shewanella sp. W3-18-1]
 gi|120558910|gb|ABM24837.1| Recombination protein MgsA [Shewanella sp. W3-18-1]
          Length = 443

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 34/177 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +     
Sbjct: 52  MMLWGPPGTGKTTLAELIAQYSNAHVERISAVTSGVKEIR------AAIEQAKAIAESRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I    +D +  ++ +  AD       RQ+ + + +   + Q  +     A  L++ M
Sbjct: 162 IKRLSNDEIAHIVTQALADTERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELM 218


>gi|229815204|ref|ZP_04445540.1| hypothetical protein COLINT_02250 [Collinsella intestinalis DSM
           13280]
 gi|229809214|gb|EEP44980.1| hypothetical protein COLINT_02250 [Collinsella intestinalis DSM
           13280]
          Length = 441

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 73/187 (39%), Gaps = 34/187 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112
           VIL GP+G+GK+ LA+I +  ++S      A +                 ++ D R  + 
Sbjct: 56  VILYGPAGTGKTTLAHIIASHTKSEFVEVSAVTGTVKDLRREIDEAKHRLMMFDRRTILF 115

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I          L H      +  + +++ A T    + V    L SR   + VV++ 
Sbjct: 116 IDEIHRFSRSQQDALLH----AVENRTVVMIGATTENPYFEVNSA-LLSR---SRVVELE 167

Query: 172 LPDDDFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
              D+ +E+++ +  +     D +     ++   I        + A      +  L L+ 
Sbjct: 168 HLADEDVERLVRRALSAPEGLDGRFSASDEVIRAICT------LAAGDGRSSLTTLELAS 221

Query: 227 GMGITRS 233
            + +TR 
Sbjct: 222 EIALTRP 228


>gi|148241495|ref|YP_001226652.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. RCC307]
 gi|147849805|emb|CAK27299.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Synechococcus sp. RCC307]
          Length = 719

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 29/201 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G+GK+ LA I ++ +R    S  A       +        E +       T
Sbjct: 56  GSLILHGPPGTGKTTLARIIANTTRCHFSSLNAVLAGIKDLRAEVEQAQERLGRHGLR-T 114

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N+          +  +  L+ A T    + V    L SR   + + ++  
Sbjct: 115 LLFIDEVHRFNTSQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLQS 170

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRME---RS-LVFAEKLVDKMDN 221
            D   L +V+ +  +D       R I +D +  A++V+      RS L   E  V+  D 
Sbjct: 171 LDQAALHQVLDRALSDRTHGYGERSIQLDAEARAHLVEVAGGDARSLLNALELAVETTDA 230

Query: 222 LALSRGMGITRSLAAEVLKET 242
            A S  + IT ++A E +++ 
Sbjct: 231 NA-SGAIQITLAVAEESIQQQ 250


>gi|78070729|gb|AAI07805.1| PSMC3 protein [Homo sapiens]
          Length = 491

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 271 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 330

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 331 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 390

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 391 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 444

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 445 GAQCKAVCVEAGMIALRRGAT 465


>gi|33863885|ref|NP_895445.1| recombination factor protein RarA/unknown domain fusion protein
           [Prochlorococcus marinus str. MIT 9313]
 gi|33635468|emb|CAE21793.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9313]
          Length = 735

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 35/201 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +  +R+   S  A       +        + ++      T L
Sbjct: 57  LLLHGPPGVGKTTLARIIAGHTRANFSSLNAVLAGVKELRQEVDAAKQRLERHGLR-TIL 115

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  +  L+ A T    + V    L SR   + + ++   +
Sbjct: 116 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKA-LVSR---SRLFRLQALE 171

Query: 175 DDFLEKVI-------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +  L +++        + + DRQ+ +    A ++V         A  L++ +  LA+   
Sbjct: 172 NADLHRLLKHALQDCERGYGDRQVMLSTAAANHLVNVAN---GDARSLLNAL-ELAVESS 227

Query: 228 MG-------ITRSLAAEVLKE 241
                    I  ++A E ++E
Sbjct: 228 RPNEQGSIHINLAIAEESIQE 248


>gi|121606099|ref|YP_983428.1| recombination factor protein RarA [Polaromonas naphthalenivorans
           CJ2]
 gi|120595068|gb|ABM38507.1| Recombination protein MgsA [Polaromonas naphthalenivorans CJ2]
          Length = 432

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 70/193 (36%), Gaps = 26/193 (13%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------VLL 113
           IL GP G GK+ +A + +    +     S +   +  I     +             V +
Sbjct: 48  ILWGPPGVGKTTIARLMASSFDAHFITISAVLGGVKDIREAVEQATIWQGQGGRRTIVFV 107

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +      + A T   S+ V    L SR   A V  +   
Sbjct: 108 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AVVYVLQPL 160

Query: 174 DDDFLEKVIVKMFADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-M 228
            +D L+++I ++ ++R +     I  +    +V   +         ++ +   A +    
Sbjct: 161 TEDDLKQIIARVLSERALPAIETIAVEAVDRLVAYADGDARRLLNTLESLSVAARAEKIT 220

Query: 229 GITRSLAAEVLKE 241
           G+T +   +VL E
Sbjct: 221 GVTDAWLLKVLGE 233


>gi|298508329|pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
 gi|298508330|pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
          Length = 489

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>gi|149045716|gb|EDL98716.1| valosin-containing protein, isoform CRA_a [Rattus norvegicus]
          Length = 686

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|40889614|pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
          Length = 816

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|73971214|ref|XP_866075.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 5 [Canis
           familiaris]
          Length = 759

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|307106887|gb|EFN55131.1| hypothetical protein CHLNCDRAFT_134194 [Chlorella variabilis]
          Length = 429

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 69/201 (34%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ +A   + ++ +T       SL  + I     ++          
Sbjct: 209 PPKGVLLHGPPGTGKTLIARACAAQTNATFLKLAGTSLVQMFIGDGAKMVRDAFALAKEK 268

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 +++ID +                  +  ++N +      D   ++ A   P   
Sbjct: 269 QPCIIFIDEIDAIGTTRRDSEMSGDREVQRTMLELLNQLDGFSSADEVKIIAATNRPDIL 328

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  + S RL     ++   P+++   K++      R++ +   +    + R      
Sbjct: 329 DPAL--MRSGRLD--RKIEFPHPNEEARAKILQ--IHSRKMTVSPDVNFDELARSTDDFN 382

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   L+     T
Sbjct: 383 AAQLKAVCVEAGMLALRRDAT 403


>gi|297483489|ref|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 3
           [Bos taurus]
 gi|296479707|gb|DAA21822.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Bos taurus]
          Length = 456

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 236 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 295

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 296 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 355

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 356 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 409

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 410 GAQCKAVCVEAGMIALRRGAT 430


>gi|332228697|ref|XP_003263530.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Nomascus
           leucogenys]
          Length = 791

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 222 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 282 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 341

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 342 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 384



 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 495 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 551


>gi|91226056|ref|ZP_01260983.1| hypothetical protein V12G01_20316 [Vibrio alginolyticus 12G01]
 gi|91189497|gb|EAS75774.1| hypothetical protein V12G01_20316 [Vibrio alginolyticus 12G01]
          Length = 449

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            D D +   + +  +D  R +          +   +        RM  SL + E L D  
Sbjct: 166 LDKDEISLALNQAISDKERGLGNTPAHFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223

Query: 220 DNLALSRGMGITRSLAAEV 238
           ++ A      IT  L AEV
Sbjct: 224 EDNA-QGEKEITLKLLAEV 241


>gi|27544726|dbj|BAC55058.1| DnaA [Mycobacterium szulgai]
          Length = 191

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83
             + D  ++ ++   A     +    P+R    + + G SG GK+ L + 
Sbjct: 124 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 173


>gi|298508323|pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
 gi|298508324|pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
 gi|298508325|pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
 gi|298508326|pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
 gi|298508327|pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
 gi|298508328|pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
          Length = 489

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>gi|325142473|gb|EGC64877.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           961-5945]
 gi|325198390|gb|ADY93846.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           G2136]
          Length = 436

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R  +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|300361690|ref|ZP_07057867.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
           JV-V03]
 gi|300354309|gb|EFJ70180.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
           JV-V03]
          Length = 426

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 64/168 (38%), Gaps = 26/168 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117
           ++L GP G+GK+ LA I + +      +    S+D+    T+           +L+++I 
Sbjct: 44  LLLWGPPGTGKTSLAQIIAREFD-YPLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            +               +    LL+ A T      +  P + SR     + +     D+ 
Sbjct: 103 RMTTTLQDFLLPY---LENGRILLIGATTENPIMSIV-PAVRSR---CQIFEFKTLSDED 155

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLAL 224
           +E+V+V+           ++  +  + ++R  V    +    D  +AL
Sbjct: 156 IEQVLVRALK--------EVFHFKDENIDRKAVKIIAISADGDLRVAL 195


>gi|150010979|gb|ABR57146.1| ATPase AAA family protein [Staphylococcus xylosus]
          Length = 425

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 75/200 (37%), Gaps = 39/200 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLIVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS- 225
           D++ ++  + +   D  R +      +D+   +Y   +   S       ++ ++   LS 
Sbjct: 152 DENDIKVSLNRALNDEERGLASYNPIVDEDAMSYFTTQ---SQGDVRSALNALELAVLSS 208

Query: 226 ----RGMGITRSLAAEVLKE 241
                   IT   A + L++
Sbjct: 209 DTTDSQRYITLQDAKDCLQK 228


>gi|228987151|ref|ZP_04147275.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772605|gb|EEM21047.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 164

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 24/121 (19%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----------- 104
           + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  +L           
Sbjct: 4   VKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTFNSEN 63

Query: 105 ----------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
                     +     ++L+DI      ++ + +LF+II+  ++ +   L T+   P   
Sbjct: 64  KENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLEPKEL 123

Query: 152 G 152
            
Sbjct: 124 K 124


>gi|218781932|ref|YP_002433250.1| ATPase AAA [Desulfatibacillum alkenivorans AK-01]
 gi|218763316|gb|ACL05782.1| AAA ATPase central domain protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 441

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 23/137 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +I  GP G GK+ LA I ++ S+S      A       +   + V+ E  D  +F+  + 
Sbjct: 49  MIFWGPPGCGKTTLARIMANASQSYFMQISAVGSG---VKQIREVVEEAKDRRNFHAQKS 105

Query: 126 -LF----HIINSIHQYDSSL---------LMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            LF    H  N   Q    L         L+ A T   S+ V  P L SR     VV + 
Sbjct: 106 ILFVDEIHRFNKAQQDG-FLPHVESGIITLIGATTENPSFEVISP-LLSR---CRVVVLK 160

Query: 172 LPDDDFLEKVIVKMFAD 188
               D ++ VI     D
Sbjct: 161 PLSSDDMKTVIQNAVQD 177


>gi|109947662|ref|YP_664890.1| recombination factor protein RarA [Helicobacter acinonychis str.
           Sheeba]
 gi|109714883|emb|CAJ99891.1| conserved hypothetical helicase-like protein [Helicobacter
           acinonychis str. Sheeba]
          Length = 393

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP--------VLLE 114
                 GP G GK+ LA I +         F+     LD + +  +          V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIAHSLERPILSFNATDFKLDDLRLKLKNYQHALLKPIVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
           +  L+K+  K        I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 ESDLDKLCSKALTLLNKQIEPSAKTYLLNN---STGDARALLNLLDLSA-----KIEDPI 202

Query: 235 AAEVLKETQ 243
             E LK  +
Sbjct: 203 TLETLKSLR 211


>gi|1705678|sp|P54774|CDC48_SOYBN RecName: Full=Cell division cycle protein 48 homolog; AltName:
           Full=Valosin-containing protein homolog; Short=VCP
 gi|862480|gb|AAA80587.1| valosin-containing protein [Glycine max]
 gi|86212372|gb|ABC87759.1| plamsma membrane-associated AAA-ATPase [Glycine max]
          Length = 807

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + +   +
Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSDDV 398



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570


>gi|332829214|gb|EGK01878.1| hypothetical protein HMPREF9455_02026 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 422

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 39/206 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI-----------LIDTRKPV 111
              +L GP G GK+ LA I ++   +     S I   +  +             +T+ P+
Sbjct: 40  PSFLLWGPPGVGKTTLAQIIANTLDTPFYTLSAINSGVKDVREVIEQAKKSQFFNTKSPI 99

Query: 112 L-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           L +++I     +      ++N++ +     L+ A T   S+ V  P L SR     V  +
Sbjct: 100 LFIDEIHRFSKSQQD--SLLNAV-ETGVITLIGATTENPSFEVIRP-LLSR---CQVYVL 152

Query: 171 SLPD-DDFL----EKVIVK-MFADRQIFIDK--KLAAYIVQRMERSLVFAEKLVDKMD-- 220
              D DD +      V    +  +R + + +   L  +       S   A KL++ +D  
Sbjct: 153 QSLDKDDLIELAHRAVTQDIILKERNVELQETNALLRF-------SGGDARKLLNILDLV 205

Query: 221 -NLALSRGMGITRSLAAEVLKETQQC 245
               +S  + IT  L  E L+E    
Sbjct: 206 TGADVSDKIVITDKLVTERLQENPAA 231


>gi|308174454|ref|YP_003921159.1| helicase associated protein [Bacillus amyloliquefaciens DSM 7]
 gi|307607318|emb|CBI43689.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554373|gb|AEB24865.1| recombination factor protein RarA [Bacillus amyloliquefaciens
           TA208]
 gi|328912777|gb|AEB64373.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           amyloliquefaciens LL3]
          Length = 422

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 70/197 (35%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTRFS--NIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  +        +   +  ++   +    +  +  ++L+++ 
Sbjct: 41  MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDMEIVVQEAKMSGQVILILDEVH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD              +    +L+ A T      +  P + SR     + ++     D 
Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPDL 153

Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-- 228
           +++ + +   D  R +      +D +   +  Q            ++ ++   LS     
Sbjct: 154 IKQALRRALTDEHRGLGSYSVSVDDEAMDHFAQGCG---GDVRSALNALELAVLSTKESS 210

Query: 229 ----GITRSLAAEVLKE 241
                ITR  A E L++
Sbjct: 211 DGTIRITRETAEECLQK 227


>gi|304439985|ref|ZP_07399878.1| AAA family ATPase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371477|gb|EFM25090.1| AAA family ATPase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 434

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 36/182 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I++  S     R S I   +  +    +     ED    +   T
Sbjct: 55  MIFYGPPGVGKTTLAEIFAGLSGYKFVRISAITSGVKELRELLKTA---EDDLKFNNVKT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     L+ A T    + V    L SR     ++ +  
Sbjct: 112 ILFIDEIHRFNKSQQDALLPFVEKGLVTLIGATTENPYFEVNSA-LLSR---CQIINLEP 167

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL---------VFAEKLVDKMDNLA 223
             ++ L  +I +  ++      +    Y+  R+               A  L++ ++  A
Sbjct: 168 LKEEDLLLLIERALSE------ENGLKYLNVRLSEDAKKTLILLAGNDARSLLNNLEIAA 221

Query: 224 LS 225
           LS
Sbjct: 222 LS 223


>gi|297620403|ref|YP_003708540.1| recombination factor RarA [Waddlia chondrophila WSU 86-1044]
 gi|297375704|gb|ADI37534.1| recombination factor RarA [Waddlia chondrophila WSU 86-1044]
          Length = 418

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 28/135 (20%)

Query: 67  VILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           +IL GP G GK+ +A +++       +S +  FS +A     +    + P+  ++  +L 
Sbjct: 41  MILWGPPGCGKTSIARLYAQAFAMDFRSLNAIFSGVADLKKIVHEVKQTPLFSQNC-VLF 99

Query: 121 FNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD-LCSRLKAATVVK 169
            ++    H  N           +  + +L+  TA          L D L SRL+   V++
Sbjct: 100 VDEI---HRFNKAQQDAFLPFIEDGTIVLIGATAENP----SFYLNDALLSRLR---VLQ 149

Query: 170 ISLPDDDFLEKVIVK 184
           +   D + LE ++ +
Sbjct: 150 LKALDHEALESILER 164


>gi|254523765|ref|ZP_05135820.1| ATPase [Stenotrophomonas sp. SKA14]
 gi|219721356|gb|EED39881.1| ATPase [Stenotrophomonas sp. SKA14]
          Length = 425

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 66/197 (33%), Gaps = 25/197 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125
           +IL GP G GK+ LA + ++ S +      A S     +   + VL E          T 
Sbjct: 34  MILWGPPGCGKTTLALLLAEYSDAEF---RAISAVLSGLPEVRQVLAEAAQRFAEGRRTV 90

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 91  LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 147

Query: 172 LPD--DDFLEKV--IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             D  +     +    +   D  I +  +L   I    +  +  A  L++    LA   G
Sbjct: 148 PTDIVEALERALGDRERGLGDEGIEVAPELLLEIATAADGDVRRALTLLEIAAELAGGEG 207

Query: 228 MGITRSLAAEVLKETQQ 244
             IT     +VL +  +
Sbjct: 208 GRITPQTLTQVLADRTR 224


>gi|170016573|ref|YP_001727492.1| ATPase [Leuconostoc citreum KM20]
 gi|169803430|gb|ACA82048.1| ATPase [Leuconostoc citreum KM20]
          Length = 430

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 76/196 (38%), Gaps = 28/196 (14%)

Query: 67  VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   K      +    S   + I   +        +LL++I 
Sbjct: 44  MILYGPPGTGKTSIASAIAGSSKYAFRVLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIH 103

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L+    D  L H+     +  + +L+ A T      V  P + SR     + +++   +
Sbjct: 104 RLNKVKQDFLLPHL-----ESGAIILIGATTENPYINVT-PAIRSR---TQIFQVTPLTE 154

Query: 176 DFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           D ++  + +   D        ++ +      ++ Q     L  A   ++ +  L+     
Sbjct: 155 DDIKSAVHRALKDDTHGLGKYKVTLTDDAMNHLAQATNGDLRSALNGLE-LAVLSTPTAK 213

Query: 229 GITRSLAAEVLKETQQ 244
             T  +   V++ET Q
Sbjct: 214 DKTIHITLPVIEETVQ 229


>gi|269967796|ref|ZP_06181843.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827616|gb|EEZ81903.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 449

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            D D +   + +  +D  R +          +   +        RM  SL + E L D  
Sbjct: 166 LDKDEISLALNQAISDKERGLGNTPAHFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223

Query: 220 DNLALSRGMGITRSLAAEV 238
           ++ A      IT  L AEV
Sbjct: 224 EDNA-QGEKEITLKLLAEV 241


>gi|217973365|ref|YP_002358116.1| recombination factor protein RarA [Shewanella baltica OS223]
 gi|217498500|gb|ACK46693.1| AAA ATPase central domain protein [Shewanella baltica OS223]
          Length = 443

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 35/196 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +     
Sbjct: 52  MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAKAVAESRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           I     D +  ++ +  +D       RQ  +   +   + Q  +     A  L++ M ++
Sbjct: 162 IKRLSHDEIAHIVTQALSDTERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMSDM 221

Query: 223 ALSRGMGITRSLAAEV 238
            L+ G   T  +  +V
Sbjct: 222 -LADGGTFTTDMLIQV 236


>gi|319426382|gb|ADV54456.1| AAA ATPase central domain protein [Shewanella putrefaciens 200]
          Length = 443

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 34/177 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +     
Sbjct: 52  MMLWGPPGTGKTTLAELIAQYSNAHVERISAVTSGVKEIR------AAIEQAKAIAESRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I    +D +  ++ +  AD       RQ+ + + +   + Q  +     A  L++ M
Sbjct: 162 IKRLSNDEIAHIVTQALADTERGLGLRQLEMPENVLIKLAQLCDGDARKALNLLELM 218


>gi|315038424|ref|YP_004031992.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1112]
 gi|312276557|gb|ADQ59197.1| recombination factor protein RarA [Lactobacillus amylovorus GRL
           1112]
          Length = 420

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 28/192 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----LIDTRKP----VLLEDID 117
           ++L GP G+GKS LA I + ++    F++   S+D+      +IDT       +L+++I 
Sbjct: 44  LLLWGPPGTGKSSLARIIA-RTNEYAFASFNASIDNKAKLLNIIDTYPHQTFVLLIDEIH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            +               +    +L+ A T      +  P + SR     + +     D  
Sbjct: 103 RMTKTLQDFLLPY---LENGHVILIGATTENPIMSIV-PAVRSR---CQIFEFKALTDKD 155

Query: 178 LEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           ++ V+ +         D Q   D++    I    +  L  A  +++ +     +    ++
Sbjct: 156 IQTVLNRAIQKIYHLKDDQ--FDEEAIKLIATSADGDLRVALNILEVIQA---TNPDKLS 210

Query: 232 RSLAAEVLKETQ 243
            S   + +KE  
Sbjct: 211 TSAVKQFVKEQH 222


>gi|148670554|gb|EDL02501.1| valosin containing protein, isoform CRA_b [Mus musculus]
          Length = 822

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 253 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 312

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 313 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 372

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 373 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 415



 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 526 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 582


>gi|229140638|ref|ZP_04269189.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus
           BDRD-ST26]
 gi|228642811|gb|EEK99091.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus
           BDRD-ST26]
          Length = 161

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 24/116 (20%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------- 104
            W    ++L G  G+GK+ LA    ++     +  + +S+  +L                
Sbjct: 6   EWKGESLLLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTFNSENKENET 65

Query: 105 -----IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
                +     ++L+DI      ++ + +LF+II+  ++ +   L T+   P    
Sbjct: 66  QIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLEPKELK 121


>gi|239616615|ref|YP_002939937.1| Holliday junction DNA helicase RuvB [Kosmotoga olearia TBF 19.5.1]
 gi|259495671|sp|C5CIU4|RUVB_KOSOT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|239505446|gb|ACR78933.1| Holliday junction DNA helicase RuvB [Kosmotoga olearia TBF 19.5.1]
          Length = 342

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 73/184 (39%), Gaps = 34/184 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I +++  +  +      ++           LE+ D+L  ++   
Sbjct: 55  VLLAGPPGLGKTTLAHIIANEMGTNIYVTSGPVIEKQGDLAAILTSLEEGDVLFIDEI-- 112

Query: 127 FHIINSIHQYDSSLLMTA----------RTFPVSWGVCLPDL----------CS------ 160
            H +    +    +L +A             P +  + L DL           S      
Sbjct: 113 -HRLGRAIEE---ILYSAMEDFKLDIMIGKGPSARSIRL-DLAPFTLVGATTRSGLIGAP 167

Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            R +   V+++     D L+++I +     ++ ID + A  +  R   +   A +L+ ++
Sbjct: 168 LRNRFGMVLELEFYTPDELKQIIKRSARLLEVKIDDEAAELLASRSRGTPRIANRLLRRV 227

Query: 220 DNLA 223
            +LA
Sbjct: 228 RDLA 231


>gi|27544698|dbj|BAC55044.1| DnaA [Mycobacterium gastri]
          Length = 186

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83
             + D  ++ ++   A     +    P+R    + + G SG GK+ L + 
Sbjct: 119 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 168


>gi|228472019|ref|ZP_04056787.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624]
 gi|228276631|gb|EEK15344.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624]
          Length = 428

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 32/144 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I  GP G+GK+ LA+I + +S+   FS  A S     +         DI      + 
Sbjct: 42  PSLIFWGPPGTGKTTLAHIIAKESQRAFFSLSAISSGIKDVR--------DIIEKSKREQ 93

Query: 125 QLF------------HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
            LF            H  N           +     L+ A T   S+ V +P L SR   
Sbjct: 94  GLFTARNPIIFIDEIHRFNKTQQDSLLEAVERGWVTLIGATTENPSFEV-IPALLSR--- 149

Query: 165 ATVVKISLPDDDFLEKVIVKMFAD 188
             V  ++    + L  ++ +    
Sbjct: 150 CQVYTLNPFSKEDLLALLTRAIEQ 173


>gi|213512913|ref|NP_001134065.1| 26S protease regulatory subunit 6A [Salmo salar]
 gi|209730462|gb|ACI66100.1| 26S protease regulatory subunit 6A [Salmo salar]
          Length = 427

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 207 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 266

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q +  + ++ A       
Sbjct: 267 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDIL 326

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 327 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 380

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 381 GAQCKAVCVEAGMIALRRGAT 401


>gi|163847144|ref|YP_001635188.1| IstB ATP binding domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524981|ref|YP_002569452.1| IstB domain-containing protein ATP-binding protein [Chloroflexus
           sp. Y-400-fl]
 gi|163668433|gb|ABY34799.1| IstB domain protein ATP-binding protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448860|gb|ACM53126.1| IstB domain protein ATP-binding protein [Chloroflexus sp. Y-400-fl]
          Length = 229

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 31/137 (22%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-------------------RS 90
            +A     +   W    ++L G  G GK+ LA   ++++                   RS
Sbjct: 58  ARAYEYAQNPQGW----LVLFGGYGCGKTHLAAAIANEALDRHTPVLFTVVPDLLDHLRS 113

Query: 91  TRFSNIAKSLDS--ILIDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
           T   N   + D    L+     ++L+D+   +   +   +L+ I+N  + Y    ++T+ 
Sbjct: 114 TFGPNSETAYDERFELVRDVPLLILDDLGTENTTPWAREKLYQIMNHRYNYALPTVITSN 173

Query: 146 TFPVSWGVCLPDLCSRL 162
             P       P + SR+
Sbjct: 174 RDPKDID---PRILSRM 187


>gi|156937486|ref|YP_001435282.1| ATPase AAA [Ignicoccus hospitalis KIN4/I]
 gi|156566470|gb|ABU81875.1| AAA family ATPase, CDC48 subfamily [Ignicoccus hospitalis KIN4/I]
          Length = 734

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   +++  +                   + L  I  + RK 
Sbjct: 218 PPKGVLLFGPPGTGKTMLAKALANEIDAHFIPINGPEIMSKYYGESEQRLREIFEEARKN 277

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 278 APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGRVVVIGATNRPNAIDPA 337

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R      V+I +P  D   ++ +     R + + + +
Sbjct: 338 L-----RRPGRLEVEIEIPLPDKKGRLEILQIHTRNMPLAEDV 375



 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S++   +
Sbjct: 491 PPKGILLFGPPGTGKTLLAKAAATESQANFIA 522


>gi|48257098|gb|AAH07562.2| VCP protein [Homo sapiens]
          Length = 644

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 75  PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 134

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 135 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 194

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 195 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 237



 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 348 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 404


>gi|14488635|pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
           Of Membrane Fusion Atpase P97
 gi|47168996|pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 gi|47168997|pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 gi|47168998|pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 gi|47168999|pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 gi|47169000|pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 gi|47169001|pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
          Length = 458

 Score = 47.1 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>gi|261392480|emb|CAX50029.1| putative ATPase [Neisseria meningitidis 8013]
          Length = 436

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R  +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|148824633|ref|YP_001289387.1| transposase [Mycobacterium tuberculosis F11]
 gi|215405462|ref|ZP_03417643.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289747257|ref|ZP_06506635.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|148723160|gb|ABR07785.1| transposase [Mycobacterium tuberculosis F11]
 gi|289687785|gb|EFD55273.1| transposase [Mycobacterium tuberculosis 02_1987]
          Length = 694

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106
            A+R +D+        VIL GP G GK+     L +  + +    RF+  ++ L  +   
Sbjct: 536 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 590

Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                             ++L+D    +    +   L+ +I+        L++T+   P 
Sbjct: 591 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 650

Query: 150 SW 151
           +W
Sbjct: 651 NW 652


>gi|315126411|ref|YP_004068414.1| recombination factor protein RarA [Pseudoalteromonas sp. SM9913]
 gi|315014925|gb|ADT68263.1| recombination factor protein RarA [Pseudoalteromonas sp. SM9913]
          Length = 447

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 26/174 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I ++ + +      A +     I        +++       T +
Sbjct: 52  LILWGPPGVGKTTLAQIIANHADAELIQMSAVTAGVKDIRDSVTQARDNLQS-RGQRTLM 110

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + + + A T   S+ +    L SR   A V  +    
Sbjct: 111 FVDEVHRFNKSQQDAFLPHIEDGTFIFVGATTENPSFALNNAIL-SR---ARVYVLKSLQ 166

Query: 175 DDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +  L  VI +        + +QI I       +    + S   A K+++ ++  
Sbjct: 167 ESDLYTVIERALKQDEQLSQKQIVIADNAKQAL---CQASGGDARKVLNLLEQA 217


>gi|240103746|ref|YP_002960055.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
 gi|239911300|gb|ACS34191.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
          Length = 796

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 75/215 (34%), Gaps = 45/215 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G+GK+ LA   +++S +   +                NI +        
Sbjct: 550 PPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIREIFRKARQA 609

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL   ++ I +    +++ A   P      
Sbjct: 610 APTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDILDPA 669

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208
           L  L      RL     + +  PD+    ++ +     R++ + + +    + +R E  +
Sbjct: 670 L--LRPGRFDRL-----ILVPAPDE--KARLEIFKVHTRKVPLAEDVNLEELAKRTEGYT 720

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
               E +V +     L+    +   +    +K  +
Sbjct: 721 GADIEAVVRE--AAMLAMRRALQEGIIRPGMKADE 753



 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 67/187 (35%), Gaps = 47/187 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  +  +  + 
Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEEN 274

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 275 APAIIFIDEIDAIAPKREETHGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDAID-- 332

Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            P L    R       ++ +PD    ++++      R + I+            R     
Sbjct: 333 -PALRRPGRFDREL--EVGVPDKQGRKEILQ--IHTRGMPIEPD--------FRRD--KV 377

Query: 213 EKLVDKM 219
            ++++K+
Sbjct: 378 IEILEKL 384


>gi|256073901|ref|XP_002573266.1| cell division control protein 48 aaa family protein  [Schistosoma
           mansoni]
 gi|238658442|emb|CAZ29498.1| cell division control protein 48 aaa family protein (transitional
           endoplasmic reticulum atpase), putative [Schistosoma
           mansoni]
          Length = 596

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   +++S S  F                SN+ K+ +    +
Sbjct: 234 PPRGILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 294 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNS---V 350

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    ++I +PD   + ++ +     R I + + +
Sbjct: 351 DPALR-RFGRFDREIEIGIPD--SIGRLEILRIHTRNIRLAEDV 391



 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKA 563


>gi|198428540|ref|XP_002121499.1| PREDICTED: similar to valosin containing protein [Ciona
           intestinalis]
          Length = 808

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ ++ +    +
Sbjct: 238 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRRAFEEAEKN 297

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 298 APAIIFIDELDAIAPKRDKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSIDAA 357

Query: 155 L 155
           L
Sbjct: 358 L 358



 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     + ++     +  + E  D  
Sbjct: 511 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEMLTMWFGESEANVREVFDKA 567


>gi|332668079|ref|YP_004450867.1| Microtubule-severing ATPase [Haliscomenobacter hydrossis DSM 1100]
 gi|332336893|gb|AEE53994.1| Microtubule-severing ATPase [Haliscomenobacter hydrossis DSM 1100]
          Length = 446

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 40/166 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVL 112
           ++L GP G GK+ LA   + + +S   +     +  + +   +              P +
Sbjct: 205 ILLYGPPGCGKTHLARATAGQIKSNFMAVGINEILDMWLGQSEKNLHAIFQKARQIKPCV 264

Query: 113 L--EDIDLLDFNDTQL-----FHIINSI--------HQYDSSLLMTARTFPVSWG--VCL 155
           L  +++D L  N + +      H+IN             D  L++ A   P         
Sbjct: 265 LFFDEVDALGANRSDMRMSAGRHLINQFLNELDGIEQSNDGVLVLAATNAPWHLDPAFRR 324

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           P    R     ++ +  PD+     ++     D+      K   Y+
Sbjct: 325 P---GRFD--RIIFVPPPDEAGRTAILEIHLRDK----PVKDVDYL 361


>gi|292493395|ref|YP_003528834.1| ATPase AAA [Nitrosococcus halophilus Nc4]
 gi|291581990|gb|ADE16447.1| AAA ATPase central domain protein [Nitrosococcus halophilus Nc4]
          Length = 454

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 34/197 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND--- 123
           ++L GP G+GK+ LA + +   ++   S  A       +       ++    +   +   
Sbjct: 66  MVLWGPPGTGKTTLARLIAHYCQAQFISLSAVLAGVKEVRA----AVDKAQRVRSEEGYG 121

Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N           +  + + + A T   S+ +    L SR     V  + 
Sbjct: 122 TVLFVDEVHRFNKSQQDAFLPYVENGTFIFIGATTENPSFELNNA-LLSR---CRVYVLK 177

Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223
                 +  +I +  AD       R + + + L   + +  +     A + ++ ++  + 
Sbjct: 178 CLRVGDICTLINRALADPEQGLGRRSLTMAETLCQRLAEAAD---GDARRALNLLEIASD 234

Query: 224 LSRGMGITRSLAAEVLK 240
           L+    I   L  +VL+
Sbjct: 235 LAEKKTIPEELLNQVLR 251


>gi|56963348|ref|YP_175079.1| recombination factor protein RarA [Bacillus clausii KSM-K16]
 gi|56909591|dbj|BAD64118.1| AAA family ATPase [Bacillus clausii KSM-K16]
          Length = 420

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 27/169 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           ++L GP G+GK+ +A   +  S               ++  +++   +     ++L+++ 
Sbjct: 43  MVLYGPPGTGKTSIARAIAGSSGMHFRMLNATVHHKKDMETAVEEAKMYGSLLLILDEVH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L     D  L H+     +    LL+ A T      +  P + SR     + ++   + 
Sbjct: 103 RLDKAKQDFLLPHL-----ESGLLLLIGATTANPYHSIN-PAIRSR---CHIFELEQLEP 153

Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
           D +EK + +  AD  R +      I  +   ++       +  A   ++
Sbjct: 154 DDIEKALRRALADEERGLGHEKIDIAPEALRHLALACGGDVRAALNALE 202


>gi|304407556|ref|ZP_07389208.1| AAA ATPase central domain protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304343507|gb|EFM09349.1| AAA ATPase central domain protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 438

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 73/200 (36%), Gaps = 33/200 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           ++L GP G GK+ LA+I S ++ +            K +  ++   +    +     + F
Sbjct: 54  ILLYGPPGCGKTTLAHIISKRTEADFVKLNAVDASVKDVRDVIDRAKTAKAMYGRKTILF 113

Query: 122 NDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
            D    H  NS  Q           ++    T    +      L SR   +T+ ++    
Sbjct: 114 LDEV--HRFNSSRQDALLPAVEQGIIIFIGATTENPFHYVNGALLSR---STLFQLQPLT 168

Query: 175 DDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            +   + +V+  AD  R      + ++ +   +I Q          + ++ ++  A++  
Sbjct: 169 KEHAREAMVRALADASRGLGFMRLEVEAEALDHIAQTAG---GDIRRALNALELAAVTTP 225

Query: 228 M------GITRSLAAEVLKE 241
                   IT  +A E +++
Sbjct: 226 SEPDGSVRITLEVAQESVRK 245


>gi|291298362|ref|YP_003509640.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM
           44728]
 gi|290567582|gb|ADD40547.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM
           44728]
          Length = 671

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 87/268 (32%), Gaps = 62/268 (23%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSWPSRV----------VIL 69
           K+K +Q+          + DD  V  A E    L  I  +   P++           V+L
Sbjct: 164 KSKAKQITKD---TPKATFDD--VAGANEAVEELQEIKDFLQNPAKYQALGAKIPKGVLL 218

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VLL 113
            GP G+GK+ LA   + ++    +S        + +                     V +
Sbjct: 219 FGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFQQAKENAPAIVFV 278

Query: 114 EDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           ++ID +            D  +  L  +   ++        +L+ A   P      L   
Sbjct: 279 DEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDNKGGVILIAATNRPDILDPAL--- 335

Query: 159 CSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEK 214
              L+       + +  PD +  + ++      R       +    I +R       A  
Sbjct: 336 ---LRPGRFDRQIPVDAPDKEGRQAILQVHA--RGKPFAPNVDMETIARRTP-GFSGA-D 388

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
           L + ++  AL       ++++ + L+E+
Sbjct: 389 LANVINEAALLTARANEKAISGDALEES 416


>gi|215428929|ref|ZP_03426848.1| transposase [Mycobacterium tuberculosis T92]
 gi|260188479|ref|ZP_05765953.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|260202495|ref|ZP_05769986.1| transposase [Mycobacterium tuberculosis T46]
 gi|289444915|ref|ZP_06434659.1| transposase [Mycobacterium tuberculosis T46]
 gi|289417834|gb|EFD15074.1| transposase [Mycobacterium tuberculosis T46]
          Length = 694

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106
            A+R +D+        VIL GP G GK+     L +  + +    RF+  ++ L  +   
Sbjct: 536 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 590

Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                             ++L+D    +    +   L+ +I+        L++T+   P 
Sbjct: 591 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 650

Query: 150 SW 151
           +W
Sbjct: 651 NW 652


>gi|126465812|ref|YP_001040921.1| proteasome-activating nucleotidase [Staphylothermus marinus F1]
 gi|126014635|gb|ABN70013.1| Proteasome-activating nucleotidase [Staphylothermus marinus F1]
          Length = 402

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ LA   + +S +T  S +   L    I     ++ E
Sbjct: 166 PPKGVLLYGPPGCGKTLLAKAVAHESGATFISIVGSELVQKFIGEGARIVRE 217


>gi|220929355|ref|YP_002506264.1| recombination factor protein RarA [Clostridium cellulolyticum H10]
 gi|219999683|gb|ACL76284.1| AAA ATPase central domain protein [Clostridium cellulolyticum H10]
          Length = 432

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 70/182 (38%), Gaps = 33/182 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILIDTRKPVL- 112
           +IL GP G+GK+ LA I ++ ++             +      A + +++L    + VL 
Sbjct: 45  IILYGPPGTGKTSLARIIANTTQSTFEKLNAVTSGVADIKRIAADTQNTLLNPNGRTVLF 104

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I   + +    L        +  S +L+ A T    + V    L SR   +TV  + 
Sbjct: 105 IDEIHRFNKSQQDALL----PFVEDGSIVLIGATTENPFFEVNKA-LISR---STVFMLK 156

Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             +   + +++     D  R +      I  +   Y+ +        A   ++ ++   L
Sbjct: 157 PLESTDIRELLENALVDKERGLGNYKINITDEALGYLCEICS---GDARTALNSLELAVL 213

Query: 225 SR 226
           + 
Sbjct: 214 TS 215


>gi|313157357|gb|EFR56780.1| recombination factor protein RarA [Alistipes sp. HGB5]
          Length = 424

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 40/192 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
              IL GP G GK+ LA I + +     F+  A +     +      ++E      F D 
Sbjct: 40  PSFILWGPPGVGKTTLAKIVATQLERPFFTLSAVTSGVKDVRE----VIESAKKQRFFDA 95

Query: 125 Q---LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           +   LF    H  N           +  +  L+ A T   S+ V  P L SR     V  
Sbjct: 96  KPPFLFIDEIHRFNKSQQDSLLGAVEQGTVTLIGATTENPSFEVISP-LLSR---CQVYI 151

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-R--------SLVFAEKLVDKMD 220
           +   +D  L+ ++     DR +  D +L     + +E R        S   A KL++ +D
Sbjct: 152 LRPMEDKDLQTLL-----DRALTTDAELK---AREVEVRQTGALFKFSGGDARKLLNILD 203

Query: 221 NLALSRGMGITR 232
            LA +    +T 
Sbjct: 204 ILAGATDGKLTI 215


>gi|307174120|gb|EFN64778.1| Transitional endoplasmic reticulum ATPase TER94 [Camponotus
           floridanus]
          Length = 801

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 54/202 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGA 354

Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           L              PD   RL+        + L DD  LE++     A+    +   LA
Sbjct: 355 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLADDVDLEEI----AAETHGHVGADLA 410

Query: 199 AYIVQRMERSLVFAEKLVDKMD 220
           +        S    +++ +KMD
Sbjct: 411 SLC------SEAALQQIREKMD 426



 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 564


>gi|215413335|ref|ZP_03422020.1| transposase [Mycobacterium tuberculosis 94_M4241A]
 gi|298526909|ref|ZP_07014318.1| transposase [Mycobacterium tuberculosis 94_M4241A]
 gi|298496703|gb|EFI31997.1| transposase [Mycobacterium tuberculosis 94_M4241A]
          Length = 694

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106
            A+R +D+        VIL GP G GK+     L +  + +    RF+  ++ L  +   
Sbjct: 536 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 590

Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                             ++L+D    +    +   L+ +I+        L++T+   P 
Sbjct: 591 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 650

Query: 150 SW 151
           +W
Sbjct: 651 NW 652


>gi|70606692|ref|YP_255562.1| replication factor C large subunit [Sulfolobus acidocaldarius DSM
           639]
 gi|73914010|sp|Q4JAB1|RFCL_SULAC RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|68567340|gb|AAY80269.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
          Length = 437

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 85/210 (40%), Gaps = 30/210 (14%)

Query: 55  LIDSWPSW--PSRVVILVGPSGSGKSCLANIWS----------DKSRSTRFSNIAKSLDS 102
            I+SW +    ++ V+L GP G GK+ LA   +          + S S    +I    + 
Sbjct: 30  WIESWLNGEPTAKAVLLYGPPGVGKTTLAEALARDYKLELLEMNASDSRNLRDIKDVAER 89

Query: 103 ILIDT------RKPVLLEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
             I         K +LL++ID +    +   +  I+  I +    +++TA      W   
Sbjct: 90  ASISGSLFGIKGKIILLDEIDGIYSRADAGAIPAILELIEKTKYPVILTANDP---WD-- 144

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L S   A  ++++       L++++ ++    +I    +   +I   +E+S   A  
Sbjct: 145 -PSLRSLRNAVKMIELKRLGKYPLKRLLKRICEKEKIVCIDEALDHI---IEQSEGDARY 200

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            ++ +  +A   G  +T     E+++   +
Sbjct: 201 CINMLQGIAEGYG-KVTLDNVKELVRRKDR 229


>gi|87301395|ref|ZP_01084236.1| ATPase [Synechococcus sp. WH 5701]
 gi|87284363|gb|EAQ76316.1| ATPase [Synechococcus sp. WH 5701]
          Length = 742

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I +  +R+   S  A       +        + ++      T L
Sbjct: 56  LILHGPPGVGKTTLARIIASSTRAHFTSLNAVLAGVKDLRVEVEAARQRLERHGLR-TLL 114

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  +  L+ A T    + V    L SR   + + ++   +
Sbjct: 115 FIDEVHRFNVAQQDALLPWVENGTVTLIGATTENPYFEVNKA-LVSR---SRLFRLQPLE 170

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
              L  ++ +  AD       R + +  + A +++             ++
Sbjct: 171 PRDLRVLLERALADGERGYGGRPVELTPEAADHLLDVAGGDARSLLNALE 220


>gi|87308504|ref|ZP_01090644.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM
           3645]
 gi|87288596|gb|EAQ80490.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM
           3645]
          Length = 461

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 77/200 (38%), Gaps = 40/200 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIA---KSLDSILIDTRKPVLLEDIDLL 119
             V+  GP G+GK+ LA + +   +SR  + + +    K L  +L   +  + +      
Sbjct: 65  NSVLFYGPPGTGKTTLAQLLARECRSRFEQLNAVTSGVKELREVLQKAKDEIAV------ 118

Query: 120 DFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
               T LF    H  N           +    +L+ A T    + V    L SR   + V
Sbjct: 119 GGRRTLLFIDEIHRFNKSQQDALLPDVENGVVILVGATTSNPFFAVNSA-LVSR---SQV 174

Query: 168 VKISLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
            +      D ++++I +  AD+        + I +    ++    E S   A + ++ ++
Sbjct: 175 FQFQPLSPDDIKQLIHRALADKSVGLGDIPVNIHEDALHFLA---EVSDGDARRALNALE 231

Query: 221 NLALSRG-MGI--TRSLAAE 237
              LS     +  T+ LAAE
Sbjct: 232 IGVLSSKERPVEFTQELAAE 251


>gi|282916895|ref|ZP_06324653.1| ATPase [Staphylococcus aureus subsp. aureus D139]
 gi|283770701|ref|ZP_06343593.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319382|gb|EFB49734.1| ATPase [Staphylococcus aureus subsp. aureus D139]
 gi|283460848|gb|EFC07938.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus H19]
          Length = 424

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 209 DNDKDGYRQVTLQDAKDCLQK 229


>gi|269218537|ref|ZP_06162391.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269211648|gb|EEZ77988.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 456

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 34/204 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTR 108
           RL ++    PS V  L GP G+GK+  A + +             S   K L +++   R
Sbjct: 59  RLAEASGGAPSSVF-LWGPPGTGKTTFAYLIARAGNRHFEEVSAVSAGVKELRAVVSAAR 117

Query: 109 KPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLP 156
           + +           +T LF    H  N           +     L+ A T   S+ V  P
Sbjct: 118 QRLA------TSGRETVLFVDEVHRFNRAQQDALLPAVENGWVTLVAATTENPSFTVVSP 171

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVF 211
            L SR   + +V +    ++ +  ++ +   D R     + I       +V+   R    
Sbjct: 172 -LLSR---SLLVTLKGLAEEDIRTLVARALEDERGFAGRLSIAADALDNLVRIAGRDGRR 227

Query: 212 AEKLVDKMDNLALSRGMGITRSLA 235
           +  L++     A +RG   T  LA
Sbjct: 228 SLTLLEAAAEGARTRG-ETTIELA 250


>gi|32450569|gb|AAH54164.1| Psmc3-prov protein [Xenopus laevis]
          Length = 423

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q +  + ++ A       
Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397


>gi|86147114|ref|ZP_01065431.1| hypothetical protein MED222_12378 [Vibrio sp. MED222]
 gi|85835179|gb|EAQ53320.1| hypothetical protein MED222_12378 [Vibrio sp. MED222]
          Length = 449

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 44/202 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + ++ + +   R S +   +  I I   K       +      T
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIEKA----RENKQAGRRT 109

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V K+
Sbjct: 110 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 163

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL------ 224
           +  + + +  VI +   D+Q  +    A +    ++R      +LV+    ++L      
Sbjct: 164 TSLNTEDISLVIRQAIEDKQRGLGDVSADFADNVLDR----LAELVNGDARMSLNYLELL 219

Query: 225 --------SRGMGITRSLAAEV 238
                        IT  L AEV
Sbjct: 220 YDMAEDNDKGEKAITLQLLAEV 241


>gi|117920496|ref|YP_869688.1| recombination factor protein RarA [Shewanella sp. ANA-3]
 gi|117612828|gb|ABK48282.1| Recombination protein MgsA [Shewanella sp. ANA-3]
          Length = 443

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 34/177 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +     
Sbjct: 52  MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAQAVAQSRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I     D +  +I +   D       RQ+ +   +   + Q  +     A  L++ M
Sbjct: 162 IKRLSQDEIVHIITQALTDPERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELM 218


>gi|224045116|ref|XP_002197546.1| PREDICTED: Werner helicase interacting protein 1 [Taeniopygia
           guttata]
          Length = 632

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 28/148 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  S   +      + D+     N+ 
Sbjct: 227 PSLILWGPPGCGKTTLAHIIANSSKKNGMRFVTLSATSAKTND-----VRDVISQAQNEK 281

Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +LF           H  N   Q          +  L+ A T   S+ V    L SR    
Sbjct: 282 RLFKRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAA-LLSR---C 337

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193
            V+ +     + +E ++++      + +
Sbjct: 338 RVIVLEKLSAEAMEAILMRAVRFLGLQV 365


>gi|215432394|ref|ZP_03430313.1| transposase [Mycobacterium tuberculosis EAS054]
          Length = 694

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106
            A+R +D+        VIL GP G GK+     L +  + +    RF+  ++ L  +   
Sbjct: 536 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 590

Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                             ++L+D    +    +   L+ +I+        L++T+   P 
Sbjct: 591 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 650

Query: 150 SW 151
           +W
Sbjct: 651 NW 652


>gi|304408765|ref|ZP_07390386.1| AAA ATPase central domain protein [Shewanella baltica OS183]
 gi|307302768|ref|ZP_07582523.1| AAA ATPase central domain protein [Shewanella baltica BA175]
 gi|304352586|gb|EFM16983.1| AAA ATPase central domain protein [Shewanella baltica OS183]
 gi|306913128|gb|EFN43550.1| AAA ATPase central domain protein [Shewanella baltica BA175]
          Length = 443

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 35/196 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +     
Sbjct: 52  MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAKAVAESRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           I     D +  ++ +  +D       RQ  +   +   + Q  +     A  L++ M ++
Sbjct: 162 IKRLSHDEIAHIVTQALSDTERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMSDM 221

Query: 223 ALSRGMGITRSLAAEV 238
            L+ G   T  +  +V
Sbjct: 222 -LADGGTFTTEMLIQV 236


>gi|212695462|ref|ZP_03303590.1| hypothetical protein BACDOR_05016 [Bacteroides dorei DSM 17855]
 gi|212661983|gb|EEB22557.1| hypothetical protein BACDOR_05016 [Bacteroides dorei DSM 17855]
          Length = 226

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 24/117 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GPSG+GK+ LA      +    +     +++ I+                  I   
Sbjct: 94  LILMGPSGTGKTFLAAGLVFDAVKAGYKAYLMTMEDIVNCLRLKDISTPAMMTYNKILRA 153

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS 160
           + + ++DI L        T  F++IN++H+  +S+++T    P  W   L D  L S
Sbjct: 154 QLLAIDDIMLFPVKREEATAFFNLINTLHE-KTSIIITTNKAPTEWVETLNDEILAS 209


>gi|15893618|ref|NP_346967.1| recombination factor protein RarA [Clostridium acetobutylicum ATCC
           824]
 gi|15023171|gb|AAK78307.1|AE007547_4 ATPase related to the helicase subunit of Holliday junction
           resolvase [Clostridium acetobutylicum ATCC 824]
 gi|325507740|gb|ADZ19376.1| recombination factor protein RarA [Clostridium acetobutylicum EA
           2018]
          Length = 443

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 33/182 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD-------------SILIDTRKPVLL 113
           +IL GP G GK+ LA I +  ++       A +                 L   R  + +
Sbjct: 54  MILWGPPGVGKTTLAMIIASTTKCNFVEFSAATSGIKEIKDIMIKAEKDRLFGIRTLLFI 113

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++I   + +    F  H+     +    +L+ A T   S+ V    L SR     V  + 
Sbjct: 114 DEIHRFNKSQQDTFLPHV-----EKGDIILIGATTENPSFEVNSA-LLSR---CRVFVLK 164

Query: 172 LPDDDFLEKVIVKMFAD-RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              ++ + K++     D R      I I + L   I      S   A   ++ ++   LS
Sbjct: 165 PLSNNDIVKLLKNALTDTRGFKNKNIQISEDLLTLIAVY---SNGDARTALNVLEMAVLS 221

Query: 226 RG 227
             
Sbjct: 222 SK 223


>gi|332031336|gb|EGI70849.1| Transitional endoplasmic reticulum ATPase TER94 [Acromyrmex
           echinatior]
          Length = 832

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 54/202 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 266 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 325

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 326 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGA 385

Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           L              PD   RL+        + L DD  LE++     A+    +   LA
Sbjct: 386 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLADDVDLEEI----AAETHGHVGADLA 441

Query: 199 AYIVQRMERSLVFAEKLVDKMD 220
           +        S    +++ +KMD
Sbjct: 442 SLC------SEAALQQIREKMD 457



 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 539 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 595


>gi|322490717|emb|CBZ25980.1| Transitional endoplasmic reticulum ATPase,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 785

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 54/184 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 227 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 286

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
               + +++ID +                 QL  +++ +      ++M A   P      
Sbjct: 287 APAIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGMKSRSQVIVMAATNRPNTIDPA 346

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   +++I      L DD  L     K+  D   F+  
Sbjct: 347 LRRFGRFDRELDIGVPDETGRLE---IIRIHTKNMKLADDIDL----EKVAKDSHGFVGA 399

Query: 196 KLAA 199
            LA 
Sbjct: 400 DLAQ 403



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+  GP G GK+ LA   + + ++   S     L ++     +  + +  D  
Sbjct: 500 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 556


>gi|240103779|ref|YP_002960088.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
 gi|239911333|gb|ACS34224.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
           gammatolerans EJ3]
          Length = 838

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 47/217 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + ++L GP G+GK+ LA   +++S +   +               K +  I    R+ 
Sbjct: 579 PPKGILLYGPPGTGKTLLAKAVANESEANFIAIRGPEVLSKWVGETEKRIREIFRKARQA 638

Query: 111 ----VLLEDIDLLDFND------TQLFHIINS-------IHQYDSSLLMTARTFPVSWGV 153
               V +++ID +            L  +IN        I +    +++ A   P     
Sbjct: 639 APTVVFIDEIDAIAPARGSYEGGRHLDTLINQLLTEMDGIQENSGVVVIGATNRPDIIDP 698

Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-R 207
            L  L      RL     + +  PD+    + I K+   R + + + +  A + ++ E  
Sbjct: 699 AL--LRPGRFDRL-----ILVPAPDEKARLE-IFKVHTRR-VPLAEDVDLAELAKKTEGY 749

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
           S    E LV      AL         L  E++++  +
Sbjct: 750 SGADIEALVR---EAALIALRRAVSRLPREIVEKQGE 783



 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 75/204 (36%), Gaps = 51/204 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  I  +  + 
Sbjct: 244 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKEAEEN 303

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 304 APSIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKGRGKVIVIAATNRPDAID-- 361

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L    +    +++ +PD    ++++      R + ++             S    E+
Sbjct: 362 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPLEP------------SFDK-EE 405

Query: 215 LVDKMDNLALSRGMGITRSLAAEV 238
           ++  +D LA   G   T   A EV
Sbjct: 406 VLTVLDRLA---GR--TDKFAEEV 424


>gi|209865725|gb|ACC66148.3| cell division cycle protein [Dimocarpus longan]
 gi|221327637|gb|ACM17483.1| cell division cycle protein [Dimocarpus longan]
          Length = 805

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P      
Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP---NTI 357

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + +   +
Sbjct: 358 DPALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSDDV 398



 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570


>gi|15677127|ref|NP_274280.1| recombination factor protein RarA [Neisseria meningitidis MC58]
 gi|7226497|gb|AAF41636.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|254671375|emb|CBA08828.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|316984713|gb|EFV63674.1| magnesium chelatase, subunit ChlI family protein [Neisseria
           meningitidis H44/76]
 gi|325134496|gb|EGC57141.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M13399]
 gi|325140513|gb|EGC63034.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           CU385]
 gi|325200112|gb|ADY95567.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           H44/76]
          Length = 436

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|71004206|ref|XP_756769.1| hypothetical protein UM00622.1 [Ustilago maydis 521]
 gi|46095658|gb|EAK80891.1| hypothetical protein UM00622.1 [Ustilago maydis 521]
          Length = 478

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 61/214 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +T    I   L    +     ++          
Sbjct: 253 PPKGVLLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 312

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                  +++D +                  +  +IN         +  ++ A   P + 
Sbjct: 313 KACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDARGNIKVLMATNRPDTL 372

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM----- 205
              L  L   RL     V+  LPD+D    ++      R + ++K +  +++ R+     
Sbjct: 373 DPAL--LRPGRLD--RRVEFGLPDNDGRANILRIHA--RSMSVEKDIRYHLIARLCPNAT 426

Query: 206 ------------------ERSLVFAEKLVDKMDN 221
                              R +      +D +D 
Sbjct: 427 GAELRSVATEAGMFAIRARRKMATERDFLDAVDK 460


>gi|313668375|ref|YP_004048659.1| AAA ATPase [Neisseria lactamica ST-640]
 gi|313005837|emb|CBN87292.1| putative AAA ATPase [Neisseria lactamica 020-06]
          Length = 436

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 21/152 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R  +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQY------DSSLL--MTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N   Q       +  LL  + A T   S+ V  P L SR   A V  +    
Sbjct: 108 FVDEVHRFNKAQQDAFLPYVERGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPLS 163

Query: 175 DDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
            D L+K++ K+ A    R   I+      +V 
Sbjct: 164 SDGLKKLVAKVLALPEYRDFTIEADAQELLVN 195


>gi|218884001|ref|YP_002428383.1| replication factor C large subunit [Desulfurococcus kamchatkensis
           1221n]
 gi|218765617|gb|ACL11016.1| replication factor C large subunit [Desulfurococcus kamchatkensis
           1221n]
          Length = 426

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 29/205 (14%)

Query: 53  VRLIDSWPSW-PSRVV-ILVGPSGSGKSCLANIWS----------DKSRSTRFSNIA--- 97
           +  + SW    PS+   +L GP G GK+ L    +          + S + R  +I    
Sbjct: 31  LEWLSSWEKGKPSKKAALLHGPPGCGKTSLVEALARSKGYQLLEMNASDARRKEDIERIV 90

Query: 98  --KSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
              S    L  +RK +LL+++D +D   +   +  ++  I    + ++MTA         
Sbjct: 91  KLASRSGALTGSRKIILLDEVDGMDVRADAGGVEALVEVIKVSANPIIMTANNPYSQMLR 150

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            L +L          K   P D     V+ ++ +  ++  + +    I +R E       
Sbjct: 151 PLREL----SEMIAFKRLTPRDVV--TVLKRICSAEKLVCEDQALDEIAKRSE---GDLR 201

Query: 214 KLVDKMDNLALSRGMGITRSLAAEV 238
             ++ ++ +A +    IT  L    
Sbjct: 202 SAINDLEAMAGASER-ITLGLVKSF 225


>gi|113970302|ref|YP_734095.1| recombination factor protein RarA [Shewanella sp. MR-4]
 gi|113884986|gb|ABI39038.1| Recombination protein MgsA [Shewanella sp. MR-4]
          Length = 443

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 34/177 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +     
Sbjct: 52  MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAQAVAQSRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I     D +  +I +   D       RQ+ +   +   + Q  +     A  L++ M
Sbjct: 162 IKRLSQDEIVHIITQALTDTERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELM 218


>gi|321450672|gb|EFX62597.1| hypothetical protein DAPPUDRAFT_300935 [Daphnia pulex]
          Length = 405

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 32/155 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R  +L GP G GK+ LA+  + +     F   A  L                +     
Sbjct: 214 PPRGFLLHGPPGCGKTLLAHAIAGELEIPFFKVAAPELVSGVSGESEEQIRFLFEQATSS 273

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
               + +++ID +            +  + +  ++            C+ DL SR +   
Sbjct: 274 APCIIFIDEIDAITPKRET------AQREMERRIV-------AQLLTCMDDLSSRDRNIP 320

Query: 167 VVKISLPD--DDFLEKVIVKMFADRQIFID-KKLA 198
           V+ I   +  D     +      DR+I +    LA
Sbjct: 321 VLVIGATNRPDALDPALRRAGRFDREISLGIPDLA 355


>gi|298529786|ref|ZP_07017189.1| AAA ATPase central domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511222|gb|EFI35125.1| AAA ATPase central domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 400

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 73/207 (35%), Gaps = 17/207 (8%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            Q   +       S +D +  S +   +R +        +  +  GP G GKS LA I +
Sbjct: 1   MQKPLAEKIRPQ-SIEDFVGQSHLRTRLRAMGQSQR--LQSTLFFGPPGCGKSTLALIIA 57

Query: 86  DKSR--STRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
                   R S     L  +   ++  + ++L+++          F     + +    +L
Sbjct: 58  GNQGKSHLRLSAPEIGLAELRKKLEGLEILILDELHRFSKAQQDFFLP---LLETGEIIL 114

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           +   T   S+ V    L SR+    V+++       L ++  +   +  + I +K    +
Sbjct: 115 LATTTENPSFSVTRQ-LLSRMN---VLRLRSLSMPELRQIGERAVKELDVSIPEKSLDLL 170

Query: 202 VQRME---RSLVFAEKLVDKMDNLALS 225
                   R+ +   + V ++D   L 
Sbjct: 171 ASLSGGDARTFLNLMEYVRELDQENLE 197


>gi|327259659|ref|XP_003214653.1| PREDICTED: 26S protease regulatory subunit 6A-like [Anolis
           carolinensis]
          Length = 422

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 202 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 261

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 262 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 321

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 322 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 375

Query: 211 FAE 213
            A+
Sbjct: 376 GAQ 378


>gi|322801676|gb|EFZ22299.1| hypothetical protein SINV_06607 [Solenopsis invicta]
          Length = 793

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 54/202 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 227 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 286

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 287 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGA 346

Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           L              PD   RL+        + L DD  LE++     A+    +   LA
Sbjct: 347 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLADDVDLEEI----AAETHGHVGADLA 402

Query: 199 AYIVQRMERSLVFAEKLVDKMD 220
           +        S    +++ +KMD
Sbjct: 403 SLC------SEAALQQIREKMD 418



 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 500 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 556


>gi|296197531|ref|XP_002746323.1| PREDICTED: ATPase WRNIP1-like isoform 2 [Callithrix jacchus]
          Length = 641

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 16/88 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 263 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 317

Query: 125 QLF-----------HIINSIHQYDSSLL 141
             F           H  N   Q +++LL
Sbjct: 318 SFFKRKTILFIDEIHRFNKSQQVNAALL 345


>gi|327398442|ref|YP_004339311.1| AAA ATPase central domain-containing protein [Hippea maritima DSM
           10411]
 gi|327181071|gb|AEA33252.1| AAA ATPase central domain protein [Hippea maritima DSM 10411]
          Length = 370

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 24/164 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF---------SNIAKSLDSILIDTRKPVLLED 115
             ++L GP G GK+  A + + K R   F           +  +L     +    V++++
Sbjct: 36  PSLVLFGPPGVGKTTYAKLLAKKHRLDFFYLNATDCPTKTLKDTLKKGSKEAPILVVIDE 95

Query: 116 IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           I   D     +        +  S +++   TF   + +    L SR     V +    ++
Sbjct: 96  IHRFDKKQQDVLLPF---LEDGSVVMVGTSTFNPYFRLTKA-LRSR---CFVYEFKRLNE 148

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             L     K  A R I ID+ L   +V         A KL++ +
Sbjct: 149 SDL-----KRLAKRFIEIDEHLLDKLVLHAS---GDARKLINMI 184


>gi|228950427|ref|ZP_04112587.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809242|gb|EEM55703.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 161

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 24/116 (20%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------- 104
            W    ++L G  G+GK+ LA    ++     +  + +S+  +L                
Sbjct: 6   EWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTFNSENKENET 65

Query: 105 -----IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
                +     ++L+DI      ++ + +LF+II+  ++ +   L T+   P    
Sbjct: 66  QIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLEPKELK 121


>gi|219849221|ref|YP_002463654.1| IstB domain-containing protein ATP-binding protein [Chloroflexus
           aggregans DSM 9485]
 gi|219543480|gb|ACL25218.1| IstB domain protein ATP-binding protein [Chloroflexus aggregans DSM
           9485]
          Length = 241

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 31/137 (22%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF---------------- 93
            +A     +   W    +IL G  G GK+ LA   ++++                     
Sbjct: 72  ARAFEYAQNPQGW----LILFGGYGCGKTHLAAAIANEALERHMPVLFTVVPDLLDHLRS 127

Query: 94  -----SNIAKSLDSILIDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTAR 145
                S  A      L+     ++L+D+   +   +   +L+ I+N  + Y    ++T+ 
Sbjct: 128 TFGPNSETAYDERFELVRDVALLILDDLGTENTTPWAREKLYQIMNHRYNYALPTVITSN 187

Query: 146 TFPVSWGVCLPDLCSRL 162
             P       P + SR+
Sbjct: 188 RDPKDID---PRILSRM 201


>gi|26344299|dbj|BAC35806.1| unnamed protein product [Mus musculus]
          Length = 698

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                D  + +
Sbjct: 139 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSN 198

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               V +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 199 APCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 258

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
              L       +A      V + +PD+   E+++  +   R++ + +
Sbjct: 259 DPALR------RAGRFDREVCLGIPDEAARERILQTLC--RKLRLPE 297



 Score = 36.3 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   +++S     S     L ++ +   +  +
Sbjct: 460 ILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 505


>gi|326492542|dbj|BAK02054.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 67/175 (38%), Gaps = 38/175 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 25  PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 84

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 85  APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 144

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
           L     R  +    + I +PD+    +V+      + + + + +    ++ + R 
Sbjct: 145 LR----RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDVE---LEHISRD 190



 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D    
Sbjct: 298 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARG 356


>gi|224140199|ref|XP_002323472.1| predicted protein [Populus trichocarpa]
 gi|222868102|gb|EEF05233.1| predicted protein [Populus trichocarpa]
          Length = 802

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 301 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 398



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570


>gi|123226008|emb|CAM19024.1| proteasome (prosome, macropain) 26S subunit ATPase 3 [Mus musculus]
          Length = 400

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 180 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 239

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 240 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 299

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 300 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 353

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 354 GAQCKAVCVEAGMIALRRGAT 374


>gi|332246197|ref|XP_003272239.1| PREDICTED: ATPase WRNIP1 isoform 4 [Nomascus leucogenys]
          Length = 613

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 16/88 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 289

Query: 125 QLF-----------HIINSIHQYDSSLL 141
             F           H  N   Q +++LL
Sbjct: 290 SFFKRKTILFIDEIHRFNKSQQVNAALL 317


>gi|218768257|ref|YP_002342769.1| recombination factor protein RarA [Neisseria meningitidis Z2491]
 gi|121052265|emb|CAM08593.1| hypothetical protein NMA1433 [Neisseria meningitidis Z2491]
          Length = 436

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|218184617|gb|EEC67044.1| hypothetical protein OsI_33786 [Oryza sativa Indica Group]
          Length = 755

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 243 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 302

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 303 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSID-- 360

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 361 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 400



 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E
Sbjct: 516 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRE 567


>gi|47226685|emb|CAG07844.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 797

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 231 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 290

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 291 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 350

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 351 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 393



 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D     
Sbjct: 504 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARML 563

Query: 123 DTQ 125
           +++
Sbjct: 564 ESE 566


>gi|307109661|gb|EFN57898.1| 26S protease regulatory subunit 7 [Chlorella variabilis]
          Length = 421

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 44/143 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 197 PPKGVLLYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARAK 256

Query: 113 ------LEDIDLLDFN-----------DTQLFHIINSIHQYDSS----LLMTARTF---- 147
                  +++D +                 +  I+N +  +D+     +LM         
Sbjct: 257 KACIIFFDEVDAIGGARHDDASGDSEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 316

Query: 148 PVSW---------GVCLPDLCSR 161
           P               LPDL SR
Sbjct: 317 PALLRPGRLDRKVEFGLPDLESR 339


>gi|297832876|ref|XP_002884320.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330160|gb|EFH60579.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 616

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 37/212 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 362 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSP 421

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        +++ A   P +    L 
Sbjct: 422 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALC 481

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V ++ PD +   K++     D  +  D  L   +V  +    V A  
Sbjct: 482 RPGRFSR-----KVVVAEPDQEGRRKILAVHLRDVPLEEDAFLICDLVASLTPGFVGA-D 535

Query: 215 LVDKMDNLALSRGMGITRSLAAE-VLKETQQC 245
           L + ++  AL        ++A E +++  ++ 
Sbjct: 536 LANIVNEAALLAARRGGEAVAREDIMEAIERA 567


>gi|297527311|ref|YP_003669335.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
 gi|297256227|gb|ADI32436.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
          Length = 734

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 60/163 (36%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + ++L GP G+GK+ LA   +++  +              +    + L  I  +    
Sbjct: 222 PPKGILLHGPPGTGKTLLAKALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERN 281

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 282 APAIIFIDEIDSIAPKREEVTGEVEKRVVAQLLALMDGLKERGKVIVIGATNRPEALD-- 339

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD     +++      R + +++ +
Sbjct: 340 -PALRRPGRFDREIEIPPPDKRARREILAVH--TRNMPLEEDV 379



 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L GP G+GK+ LA   + +S +   +
Sbjct: 500 ILLFGPPGTGKTLLAKAVATESGANFIA 527


>gi|228475177|ref|ZP_04059903.1| recombination factor protein RarA [Staphylococcus hominis SK119]
 gi|228270788|gb|EEK12190.1| recombination factor protein RarA [Staphylococcus hominis SK119]
          Length = 422

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 39/200 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   +  +          +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAIAGSTEYKFRQLNAVTNTKKDMQMIVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR     + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIILIGATTSNPYHAIN---PAIRSR---VQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           D+  + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 DEKDVYQALTRALNDDQNGLKLYQPKIDEDALKYFSTQ---SHGDVRSALNALELAVLSA 208

Query: 227 G-----MGITRSLAAEVLKE 241
                   +T   A + L++
Sbjct: 209 KVSNNQRHVTLEDAKDCLQK 228


>gi|240170720|ref|ZP_04749379.1| recombination factor protein RarA [Mycobacterium kansasii ATCC
           12478]
          Length = 446

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 30/176 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
           VIL GP GSGK+ LA + S  +          S   K + +++   R+ +L        +
Sbjct: 64  VILYGPPGSGKTTLAALVSQATGRRFEALSALSAGVKDVRAVIEGARRGLLAGEQTVLFI 123

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     S  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 124 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFAVVAP-LLSR---SLILQLRP 175

Query: 173 PDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              D +  V+ +   D R     + +  +    +VQ    +   A + +  ++  A
Sbjct: 176 LTSDDIRIVVQRAIEDPRGFGGRVVVTPEAVELLVQ---LAAGDARRALTALEVAA 228


>gi|168031055|ref|XP_001768037.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680675|gb|EDQ67109.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 812

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 301 APAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHSKNMKLAEDV 398



 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D    
Sbjct: 514 PSKGVLFYGPPGCGKTMLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARG 572


>gi|156370042|ref|XP_001628281.1| predicted protein [Nematostella vectensis]
 gi|156215254|gb|EDO36218.1| predicted protein [Nematostella vectensis]
          Length = 807

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 232 PPRGILLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 291

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ + Q    ++M A   P S  V 
Sbjct: 292 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNSVDVA 351

Query: 155 L 155
           L
Sbjct: 352 L 352



 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 505 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 561


>gi|157787079|ref|NP_001099450.1| nuclear valosin-containing protein-like [Rattus norvegicus]
 gi|149040892|gb|EDL94849.1| nuclear VCP-like (predicted) [Rattus norvegicus]
          Length = 855

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                D  + +
Sbjct: 296 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRDLFDQAVSN 355

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               V +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 356 APCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVVGATNRPDSL 415

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
              L       +A      V + +PD+   E+++  +   R++ + +
Sbjct: 416 DPALR------RAGRFDREVCLGIPDEASRERILQTLC--RKLRLPE 454


>gi|325144597|gb|EGC66896.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M01-240013]
          Length = 436

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|254673529|emb|CBA08975.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 436

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|221632702|ref|YP_002521923.1| putative chromosome replication initiation protein [Thermomicrobium
           roseum DSM 5159]
 gi|221155787|gb|ACM04914.1| putative chromosome replication initiation protein [Thermomicrobium
           roseum DSM 5159]
          Length = 215

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 36/145 (24%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS--------------------D 86
             +  A R+   +   P   ++L+G  G GK+ LA   +                    D
Sbjct: 53  PGVADAYRIALEYARNPDGWLLLMGGFGCGKTHLAAAIANYVLHHQRLFPLFTVVPDLLD 112

Query: 87  KSRSTRFSNIAKSLDSIL--IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLL 141
             R+T   +   S D+    +     ++L+D+       +   +LF IIN  +      +
Sbjct: 113 YLRATFAPDRTDSYDNRFEQVRNAGLLVLDDLGTEHTTPWATEKLFQIINYRYNQRKPTV 172

Query: 142 MTARTFPVSWGVCLPDL----CSRL 162
           +T           L DL     SRL
Sbjct: 173 ITTNR-------DLDDLDERIRSRL 190


>gi|219109539|ref|XP_002176524.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411059|gb|EEC50987.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 431

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 70/205 (34%), Gaps = 44/205 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------- 105
           P + V+L GP G+GK+ LA   ++++ +         L  + I                 
Sbjct: 205 PPKGVLLHGPPGTGKTLLARACANQTNAVFLKLAGPQLVQMFIGDGAKMIRDAFELAKAK 264

Query: 106 -----DTRKPVLLEDIDLL-----DFNDT----------QLFHIINSIHQYDSSLLMTAR 145
                 +   + +++ID +       + +          +L   ++     +   ++ A 
Sbjct: 265 IKQGVASGAILFIDEIDAIGTKRFGGDQSGDREVQRTMLELLSQLDGFSSNEMIKVIAAT 324

Query: 146 TFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
             P      L  L S RL     +++  P+++   K++      R++ +  ++    + R
Sbjct: 325 NRPDVLDPAL--LRSGRLD--RKIELPHPNEEARAKIMRIHA--RKMNVSSEVVYEELAR 378

Query: 205 MERSLVFAEKLVDKMDNLALSRGMG 229
                  A+     ++   L+    
Sbjct: 379 SCEDFNGAQLKAVCVEAGMLALRRE 403


>gi|149022609|gb|EDL79503.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform
           CRA_b [Rattus norvegicus]
          Length = 407

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395

Query: 211 FAE 213
            A+
Sbjct: 396 GAQ 398


>gi|149725086|ref|XP_001491930.1| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit
           ATPase 3 isoform 2 [Equus caballus]
          Length = 381

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 161 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 220

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 221 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 280

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 281 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 334

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 335 GAQCKAVCVEAGMIALRRGAT 355


>gi|307211146|gb|EFN87364.1| Transitional endoplasmic reticulum ATPase TER94 [Harpegnathos
           saltator]
          Length = 796

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGA 354

Query: 155 L 155
           L
Sbjct: 355 L 355



 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 503 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 559


>gi|300087740|ref|YP_003758262.1| IstB domain-containing protein ATP-binding protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527473|gb|ADJ25941.1| IstB domain protein ATP-binding protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 439

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 20/137 (14%)

Query: 5   KEDYSFFVP-----DKQKNDQPKNK---------EEQLFF---SFPRCLGISRDDLLVHS 47
           K DYS  +P      +      + +           QL F   +       S  D L   
Sbjct: 28  KTDYSRIIPCQCISGQTGESPKRQRLLDYSRLGNMRQLTFENFNLDFRKDTSAPDKLE-- 85

Query: 48  AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
            +  A  +  ++ S P  V++++GPSG+GK+ LA   ++K   T    I  S   +L + 
Sbjct: 86  -LTTAFEMSLNFASDPRGVLLIIGPSGAGKTHLAAAITNKLIETGKPVIYMSTPDLLDEL 144

Query: 108 RKPVLLEDIDLLDFNDT 124
           R  +   D D+    + 
Sbjct: 145 RTNLPYHDRDIPAIFEQ 161



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 30/150 (20%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------------------WSDKSRSTR 92
           A +L   +   P   +IL G +G GK+ LA                     + D  RST 
Sbjct: 273 AYKLAQDFSKMPEGWLILQGVTGCGKTHLAAAIVNYRYSIGLPAIFSVVPEFLDHLRSTF 332

Query: 93  FSNIAKSLDSIL--IDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTF 147
             +   S D+I   I T   ++ +D        +   +L+ +I+  +      ++T R  
Sbjct: 333 TPDSPVSYDNIFDRIKTAPFLVFDDFGEHATSPWAREKLYQVISYRYNAQLPTVITTRVA 392

Query: 148 PVSWGVCLPDLCSRL---KAATVVKISLPD 174
                   P + SR    + + V  I+ PD
Sbjct: 393 LDELE---PPISSRFIDHQFSLVFNITAPD 419


>gi|289576159|ref|ZP_06456386.1| LOW QUALITY PROTEIN: transposase [Mycobacterium tuberculosis K85]
 gi|289540590|gb|EFD45168.1| LOW QUALITY PROTEIN: transposase [Mycobacterium tuberculosis K85]
          Length = 644

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106
            A+R +D+        VIL GP G GK+     L +  + +    RF+  ++ L  +   
Sbjct: 486 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 540

Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                             ++L+D    +    +   L+ +I+        L++T+   P 
Sbjct: 541 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 600

Query: 150 SW 151
           +W
Sbjct: 601 NW 602


>gi|297527514|ref|YP_003669538.1| 26S proteasome subunit P45 family [Staphylothermus hellenicus DSM
           12710]
 gi|297256430|gb|ADI32639.1| 26S proteasome subunit P45 family [Staphylothermus hellenicus DSM
           12710]
          Length = 402

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ LA   + +S +T  S +   L    I     ++ E
Sbjct: 166 PPKGVLLYGPPGCGKTLLAKAVAHESGATFISIVGSELVQKFIGEGARIVRE 217


>gi|224069527|ref|XP_002326365.1| predicted protein [Populus trichocarpa]
 gi|222833558|gb|EEE72035.1| predicted protein [Populus trichocarpa]
          Length = 810

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 243 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 302

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 303 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 360

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 361 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMRLAEDV 400



 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 516 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 572


>gi|315231037|ref|YP_004071473.1| cell division FtsH-like protein [Thermococcus barophilus MP]
 gi|315184065|gb|ADT84250.1| cell division FtsH-like protein [Thermococcus barophilus MP]
          Length = 796

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 74/195 (37%), Gaps = 40/195 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  +  +  + 
Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEEN 274

Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 275 APSIIFIDEIDAIAPKRGEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDALD-- 332

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM-------ER 207
            P L    +    +++ +PD    ++++      R + I+ +     V+R+       ER
Sbjct: 333 -PALRRPGRFDREIEVGVPDRQGRKEILQ--IHTRGMPIEPEFRKSEVKRILEGLRGDER 389

Query: 208 SLVFAEKLVDKMDNL 222
                 + ++K++  
Sbjct: 390 FRDIINRAIEKVERA 404



 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 48/192 (25%)

Query: 45  VHSAIEQAVRLIDSWPSW-------PSRVVILVGPSGSGKSCLANIWSDKSRSTRF---- 93
           V  A+ +AV     +P         P + ++L GP G+GK+ LA   + +S +       
Sbjct: 525 VKEALREAVEWPLKYPEAFQALGINPPKGILLYGPPGTGKTLLAKAVATESEANFIGIRG 584

Query: 94  ------------SNIAKSLDSILIDTRKPVLLEDIDLLDFND------------TQLFHI 129
                        NI +            + +++ID +                 QL   
Sbjct: 585 PEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTE 644

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLC----SRLKAATVVKISLPDDDFLEKVIVKM 185
           ++ I +    +++ A   P      L  L      RL     + +  PD+    ++    
Sbjct: 645 MDGIEENSGVVVIAATNRPDILDPAL--LRPGRFDRL-----ILVPAPDEKARYEIFKVH 697

Query: 186 FADRQIFIDKKL 197
              R++ + + +
Sbjct: 698 --TRKMPLSEDV 707


>gi|150401347|ref|YP_001325113.1| AAA family ATPase, CDC48 subfamily protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014050|gb|ABR56501.1| AAA family ATPase, CDC48 subfamily [Methanococcus aeolicus
           Nankai-3]
          Length = 723

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 209 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEDAEEE 268

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P S    
Sbjct: 269 APSIIFIDEIDSVAPKRDEASGEVERRMVAQLLTLMDGLGGRGQVVVIAATNRPDSLDGA 328

Query: 155 L 155
           L
Sbjct: 329 L 329



 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++S++   S
Sbjct: 481 PPKGVLLFGPPGTGKTMLAKAVANESQANFIS 512


>gi|114605196|ref|XP_001159500.1| PREDICTED: ATPase WRNIP1 isoform 1 [Pan troglodytes]
          Length = 640

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 16/88 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQYDSSLL 141
             F           H  N   Q +++LL
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQVNAALL 344


>gi|297483981|ref|XP_002694038.1| PREDICTED: nuclear VCP-like [Bos taurus]
 gi|296479315|gb|DAA21430.1| nuclear VCP-like [Bos taurus]
          Length = 864

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  +  
Sbjct: 296 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSS 355

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 356 APCILFIDEIDAITPKREIASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 415

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
              L       +A      + + +PD+   E+++  +   R++ + +
Sbjct: 416 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPE 454


>gi|229581482|ref|YP_002839881.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012198|gb|ACP47959.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
          Length = 769

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + ++L GP G GK+ LA   ++++ +              +    + L  I  D +K 
Sbjct: 225 PPKGILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 284

Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPV----- 149
               + +++ID +    ++           QL  +++ +    + +++ A   P      
Sbjct: 285 APAIIFVDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPSAVDPA 344

Query: 150 ---------SWGVCLPDLCSRL 162
                       + LPD   RL
Sbjct: 345 LRRPGRFDREIEIPLPDKQGRL 366



 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 498 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 529


>gi|328783535|ref|XP_392892.3| PREDICTED: transitional endoplasmic reticulum ATPase TER94 isoform
           1 [Apis mellifera]
          Length = 811

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 54/202 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + ++++D +                 QL  +++ + Q    ++M A   P      
Sbjct: 294 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
                       + +PD   RL+        + L DD  LE++     A+    +   LA
Sbjct: 354 LRRFGRFDKEIDIGIPDATGRLEILRIHTKNMKLADDVELEEI----AAETHGHVGADLA 409

Query: 199 AYIVQRMERSLVFAEKLVDKMD 220
           +        S    +++ +KMD
Sbjct: 410 SLC------SEAALQQIREKMD 425



 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 563


>gi|282164972|ref|YP_003357357.1| Holliday junction ATP-dependent DNA helicase RuvB [Methanocella
           paludicola SANAE]
 gi|282157286|dbj|BAI62374.1| Holliday junction ATP-dependent DNA helicase RuvB [Methanocella
           paludicola SANAE]
          Length = 344

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 76/204 (37%), Gaps = 25/204 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA+I + +  +        +++           +++ D++  +
Sbjct: 64  PLDHVLLYGPPGLGKTTLAHIIAREMGANIRITSGPAIERPGDLAAILTNIKEGDVIFID 123

Query: 123 DT-QLFHI-----INSIHQYDSSLLMTARTFPVSWGVCLPD----------------LCS 160
           +  +L H+       ++  Y+  +++       S  + LP                 L  
Sbjct: 124 EIHRLSHVVEEVMYPAMEDYEIDIIIGKGPSARSIRLELPKFTLVGATTRAGLLTSPLRD 183

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM- 219
           R   +       P D  L+ +I +  +   + + +  +  I +R   +   A +L+ ++ 
Sbjct: 184 RFGMSMRFDFYEPRD--LKTIIDRSASILGVELSEDGSMEIAKRSRGTPRIANRLLRRVR 241

Query: 220 DNLALSRGMGITRSLAAEVLKETQ 243
           D  ++     I R +  + L    
Sbjct: 242 DFASVGNKKVIDREIVNDSLNRLD 265


>gi|256826951|ref|YP_003150910.1| Recombination protein MgsA [Cryptobacterium curtum DSM 15641]
 gi|256583094|gb|ACU94228.1| Recombination protein MgsA [Cryptobacterium curtum DSM 15641]
          Length = 435

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 79/196 (40%), Gaps = 31/196 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------VL 112
           VIL GP+G+GK+ +A+I ++ +++     S I  ++  +  +                + 
Sbjct: 56  VILYGPAGTGKTSIAHIIAESTKAEFVEVSAIGGTVSDLRREIAAAEKRLTSHGMRTILF 115

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I   +      L H      +    +L+ A T    + V    L SR   + +V+++
Sbjct: 116 VDEIHRFNRSQQDALLH----AVEDRVVVLVGATTENPFFEVNSA-LLSR---SRIVELT 167

Query: 172 LPDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
              D+ +  V+ +   D R +     +D +    I   M+ S   A   +  ++      
Sbjct: 168 SLSDEEIASVVQRALVDERGLAGAYSLDDEALDAI---MQVSGGDARSALTTLELACDMA 224

Query: 227 GMGITRSLAAEVLKET 242
               T ++ A ++K+ 
Sbjct: 225 RAEDTHAITAAMVKKA 240


>gi|159041543|ref|YP_001540795.1| AAA family ATPase, CDC48 subfamily protein [Caldivirga
           maquilingensis IC-167]
 gi|157920378|gb|ABW01805.1| AAA family ATPase, CDC48 subfamily [Caldivirga maquilingensis
           IC-167]
          Length = 852

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 46/159 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L+GP G+GK+ LA   ++++ +   S                 + +  D    +
Sbjct: 213 PPKGVLLIGPPGTGKTLLAKAVANEADAYFVSINGPEIVSKYYGESEARLREIFDEAKRN 272

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
               + +++ID +                 QL  +++ + +    +++ A   P      
Sbjct: 273 APAIIFIDEIDSIAPKREEVTGEVEKRIVAQLLTLMDGLQERGQVVVIGATNRPDAVDPA 332

Query: 149 --------VSWGVCLPDLCSRLK----AATVVKISLPDD 175
                       + +PD  +RL         V +  PDD
Sbjct: 333 LRRPGRFDREINIGMPDKRARLDILSIHTRGVPLCTPDD 371



 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   +++S +   +
Sbjct: 507 PPKGILLFGPPGTGKTLLAKAVANESGANFIA 538


>gi|115450773|ref|NP_001048987.1| Os03g0151800 [Oryza sativa Japonica Group]
 gi|108706222|gb|ABF94017.1| Cell division cycle protein 48, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113547458|dbj|BAF10901.1| Os03g0151800 [Oryza sativa Japonica Group]
 gi|125542437|gb|EAY88576.1| hypothetical protein OsI_10049 [Oryza sativa Indica Group]
 gi|125584947|gb|EAZ25611.1| hypothetical protein OsJ_09438 [Oryza sativa Japonica Group]
 gi|215704352|dbj|BAG93786.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704409|dbj|BAG93843.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704637|dbj|BAG94265.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704711|dbj|BAG94339.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 809

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 243 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 302

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 303 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSID-- 360

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 361 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 400



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 516 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 572


>gi|338700|gb|AAA36666.1| tat binding protein-1 (tbp-1) [Homo sapiens]
          Length = 404

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 243

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 244 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 303

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 304 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 357

Query: 211 FAE 213
            A+
Sbjct: 358 GAQ 360


>gi|312897412|ref|ZP_07756836.1| recombination factor protein RarA [Megasphaera micronuciformis
           F0359]
 gi|310621473|gb|EFQ05009.1| recombination factor protein RarA [Megasphaera micronuciformis
           F0359]
          Length = 443

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 28/154 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +I  GP G GK+ LA + +  +++    FS +   +  I    +K     D +     
Sbjct: 51  PSMIFWGPPGVGKTTLARVIAGHTKAAFVDFSAVTGGIKEIRQIMQKA----DENTRYGE 106

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  S +L+ A T   S+ +    L SR     V  +
Sbjct: 107 KTILFVDEIHRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINGA-LLSR---CKVFVL 162

Query: 171 SLPDDDFLEKVIVKMFAD------RQIFIDKKLA 198
                D +++++ +  A+      R+I ID  L 
Sbjct: 163 HALTADDIKELLKRALAEPEGFGTREIRIDDDLL 196


>gi|303388207|ref|XP_003072338.1| Cdc48-like AAA ATPase [Encephalitozoon intestinalis ATCC 50506]
 gi|303301477|gb|ADM10978.1| Cdc48-like AAA ATPase [Encephalitozoon intestinalis ATCC 50506]
          Length = 780

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 65/166 (39%), Gaps = 39/166 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID L                 QL  +++ +    + +++ A   P S    
Sbjct: 301 SPSIIFIDEIDALAPKREKSQGEVERRIVSQLLTLMDGMKARSNVIVLGATNRPNSIDSA 360

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L       +       ++I +PD+    +++      + + + + +
Sbjct: 361 LR------RYGRFDREIEIGVPDETGRLEIL--RIHTKNMKMSEDV 398



 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 54/164 (32%), Gaps = 47/164 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL-------------DSILIDTRK 109
           P++ V+  GP G GK+ LA   + + ++   S     L             D        
Sbjct: 514 PAKGVLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFARARGA 573

Query: 110 PVLL---EDIDLLD----FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              +   ++ID +      ND           QL   ++ I+Q  +  ++ A   P    
Sbjct: 574 APCVLFFDEIDSIAKARSGNDGSSGVTDRMLNQLLSEMDGINQKKNVFVIGATNRPDQLD 633

Query: 153 --------------VCLPDLCSR---LKAATVVKISLPDDDFLE 179
                         + LPDL SR   L+A        PD D  +
Sbjct: 634 SALMRPGRLDQLVYIPLPDLESRVSILQATLKKTPLSPDIDLRQ 677


>gi|227828221|ref|YP_002830001.1| ATPase AAA [Sulfolobus islandicus M.14.25]
 gi|227830979|ref|YP_002832759.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|229579858|ref|YP_002838257.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|229585449|ref|YP_002843951.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238620412|ref|YP_002915238.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|284998468|ref|YP_003420236.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
 gi|227457427|gb|ACP36114.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|227460017|gb|ACP38703.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25]
 gi|228010573|gb|ACP46335.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|228020499|gb|ACP55906.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238381482|gb|ACR42570.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|284446364|gb|ADB87866.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
          Length = 769

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + ++L GP G GK+ LA   ++++ +              +    + L  I  D +K 
Sbjct: 225 PPKGILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 284

Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPV----- 149
               + +++ID +    ++           QL  +++ +    + +++ A   P      
Sbjct: 285 APAIIFVDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPSAVDPA 344

Query: 150 ---------SWGVCLPDLCSRL 162
                       + LPD   RL
Sbjct: 345 LRRPGRFDREIEIPLPDKQGRL 366



 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 498 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 529


>gi|289449125|ref|ZP_06438869.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289422083|gb|EFD19284.1| transposase [Mycobacterium tuberculosis CPHL_A]
          Length = 724

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106
            A+R +D+        VIL GP G GK+     L +  + +    RF+  ++ L  +   
Sbjct: 566 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 620

Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                             ++L+D    +    +   L+ +I+        L++T+   P 
Sbjct: 621 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 680

Query: 150 SW 151
           +W
Sbjct: 681 NW 682


>gi|110289141|gb|AAP53974.2| Cell division cycle protein 48, putative, expressed [Oryza sativa
           Japonica Group]
 gi|222612898|gb|EEE51030.1| hypothetical protein OsJ_31677 [Oryza sativa Japonica Group]
          Length = 808

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 243 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 302

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 303 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSID-- 360

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 361 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 400



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 516 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 572


>gi|319410506|emb|CBY90869.1| putative ATPase [Neisseria meningitidis WUE 2594]
          Length = 436

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|307263100|ref|ZP_07544722.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871726|gb|EFN03448.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 443

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 35/205 (17%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           S  +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++    
Sbjct: 46  SHSMIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTG 101

Query: 122 NDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATV 167
             T LF    H  N   Q        D +++    T              L SR   A +
Sbjct: 102 RRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKI 155

Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
             +       + +V+     D  R +     +I+  +   +   +     FA   ++ M 
Sbjct: 156 YILKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMS 215

Query: 221 NLALS--RGMGITRSLAAEVLKETQ 243
           ++A    +G  + ++L AEVL E Q
Sbjct: 216 DMAEISPQGKHLNKALLAEVLGERQ 240


>gi|296087560|emb|CBI34149.3| unnamed protein product [Vitis vinifera]
          Length = 397

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 38/197 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS------RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
             +IL GP G+GK+ +A    + S      R    S +   +  +     +   ++    
Sbjct: 32  PSIILWGPPGTGKTSIAKAIVNSSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKN 91

Query: 119 LDFNDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           ++   T LF    H  N         + +  S + + A T   S+ +  P L SR     
Sbjct: 92  MNSKRTLLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITP-LLSR---CR 147

Query: 167 VVKISLPDDDFLEKVIVKMFADRQ-----------IFIDKKLAAYIVQRMERSLVFAEKL 215
           V+ ++      +  ++ +  AD             I +      ++    +     A   
Sbjct: 148 VLTLNPLQPSHVASLLNRAVADTGRGLAWSVGGASIEVSDDAIDFLSSHCDGDARVALNA 207

Query: 216 VD-----KMDNLALSRG 227
           ++          AL   
Sbjct: 208 LEISAVTAAAREALQSK 224


>gi|225440045|ref|XP_002282146.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297741633|emb|CBI32765.3| unnamed protein product [Vitis vinifera]
          Length = 806

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSEDV 398



 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570


>gi|149234641|ref|XP_001523200.1| 26S protease regulatory subunit 6A [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146453309|gb|EDK47565.1| 26S protease regulatory subunit 6A [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 429

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++          
Sbjct: 208 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 267

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A     + 
Sbjct: 268 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 327

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L  L S RL     ++  LP ++  E V+      R++  D     +  + + RS
Sbjct: 328 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLHCDNDSINW--RELARS 377


>gi|121634950|ref|YP_975195.1| recombination factor protein RarA [Neisseria meningitidis FAM18]
 gi|120866656|emb|CAM10407.1| hypothetical protein NMC1159 [Neisseria meningitidis FAM18]
 gi|325132559|gb|EGC55252.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M6190]
 gi|325138333|gb|EGC60902.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           ES14902]
          Length = 436

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropyrum pernix K1]
 gi|5105048|dbj|BAA80362.1| cell division control protein 48, AAA family [Aeropyrum pernix K1]
          Length = 726

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + ++L GP G+GK+ LA   +++  +   S               + L  I  +  + 
Sbjct: 217 PPKGILLYGPPGTGKTLLAKALANEIGAYFISINGPEIMSKYYGESEQRLREIFKEAEEN 276

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 277 APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKERGRVIVIGATNRPDAID-- 334

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD     +++      R + + + +
Sbjct: 335 -PALRRPGRFDREIEIRPPDKRARAEILKVHT--RNMPLAEDV 374



 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R V+L GP G+GK+ LA   + +S +   +
Sbjct: 492 PPRGVLLFGPPGTGKTLLAKAVATESGANFIA 523


>gi|54020867|ref|NP_001005677.1| transitional endoplasmic reticulum ATPase [Xenopus (Silurana)
           tropicalis]
 gi|82183742|sp|Q6GL04|TERA_XENTR RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           Short=p97; AltName: Full=Valosin-containing protein;
           Short=VCP
 gi|49257794|gb|AAH74716.1| valosin-containing protein [Xenopus (Silurana) tropicalis]
          Length = 805

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    V I +PD     +++      + + +   +
Sbjct: 357 LR----RFGRFDREVDIGIPDSTGRLEILQ--IHTKNMKLSDDV 394



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|332288542|ref|YP_004419394.1| recombination factor protein RarA [Gallibacterium anatis UMN179]
 gi|330431438|gb|AEC16497.1| recombination factor protein RarA [Gallibacterium anatis UMN179]
          Length = 445

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 30/151 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDI--DLLDFN 122
           +I  GP G+GK+ LA I + +  +     S +   +  I         +E    +     
Sbjct: 53  MIFWGPPGTGKTTLAEIIAHRLNAKVEYLSAVTSGVKEIRE------AIERAKQNQFAGQ 106

Query: 123 DTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVV 168
            T LF    H  N   Q        D +++    T              L SR   A V 
Sbjct: 107 QTLLFVDEVHRFNKSQQDAFLPYIEDGTIIFIGATTENPSFELNSA---LLSR---ARVY 160

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
            +   + D + +V+ +   D+Q     ++  
Sbjct: 161 LLKSLNIDEIVEVLQRALQDKQFGYGNQIIN 191


>gi|297461182|ref|XP_611864.5| PREDICTED: nuclear VCP-like [Bos taurus]
          Length = 917

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  +  
Sbjct: 353 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSS 412

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 413 APCILFIDEIDAITPKREIASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 472

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
              L       +A      + + +PD+   E+++  +   R++ + +
Sbjct: 473 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPE 511


>gi|18426904|ref|NP_569079.1| ATPase WRNIP1 isoform 2 [Homo sapiens]
 gi|17511930|gb|AAH18923.1| Werner helicase interacting protein 1 [Homo sapiens]
 gi|55661734|emb|CAH73663.1| Werner helicase interacting protein 1 [Homo sapiens]
 gi|119575491|gb|EAW55087.1| Werner helicase interacting protein 1, isoform CRA_c [Homo sapiens]
 gi|123982094|gb|ABM82876.1| Werner helicase interacting protein 1 [synthetic construct]
 gi|123996921|gb|ABM86062.1| Werner helicase interacting protein 1 [synthetic construct]
 gi|189067919|dbj|BAG37857.1| unnamed protein product [Homo sapiens]
          Length = 640

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 16/88 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQYDSSLL 141
             F           H  N   Q +++LL
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQVNAALL 344


>gi|332158080|ref|YP_004423359.1| cell division protein CDC48 [Pyrococcus sp. NA2]
 gi|331033543|gb|AEC51355.1| cell division protein CDC48 [Pyrococcus sp. NA2]
          Length = 795

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  +  +  + 
Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274

Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 275 APAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDALD-- 332

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    +++ +PD    ++++      R + I+  
Sbjct: 333 -PALRRPGRFDREIEVGVPDKKGRKEILQ--IHTRGMPIEPD 371



 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 42/177 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G+GK+ LA   + +S +   +                NI +        
Sbjct: 549 PPKGILLYGPPGTGKTLLAKAVATESEANFIAVRGPEILSKWVGESEKNIREIFRKARQA 608

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL   ++ I +    +++ A   P      
Sbjct: 609 APTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENTGVVVIAATNRPDILDPA 668

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME 206
           L  L      RL     + +  PD+    ++       R + + + +    + +R E
Sbjct: 669 L--LRPGRFDRL-----ILVPAPDERARFEIFKVH--TRNMPLGEDVDLRELARRTE 716


>gi|330834114|ref|YP_004408842.1| replication factor C large subunit [Metallosphaera cuprina Ar-4]
 gi|329566253|gb|AEB94358.1| replication factor C large subunit [Metallosphaera cuprina Ar-4]
          Length = 437

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 83/214 (38%), Gaps = 36/214 (16%)

Query: 54  RLIDSW----PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR----------------F 93
             IDSW    P+   + V+L GP G GK+ +A   +                        
Sbjct: 29  SWIDSWIKGKPN--YKSVLLYGPPGIGKTTMALALAKSYGLEIIEMNASDTRNVTSLRGI 86

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSW 151
           +  A    S+  D  K + L++ID +        +  ++  I      ++M A      W
Sbjct: 87  AEKASVTGSLFSDRGKLIFLDEIDGIQSKQDFGAISTVLELISNTKYPIIMAANNP---W 143

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
              L +L     A  +++I       + +++ K+ A+ ++  +      I   +E S   
Sbjct: 144 DPNLRELR---NATKMIEIKKLGKIPMRRLLKKICANEKVKCEDAAIDVI---IEASDGD 197

Query: 212 AEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244
           A   ++ +   +++ G   +T+S+  E+++  ++
Sbjct: 198 ARYAINML--QSVAEGYGQVTQSVVEELVRRKER 229


>gi|20093359|ref|NP_619434.1| cell division control protein 48 [Methanosarcina acetivorans C2A]
 gi|19918724|gb|AAM07914.1| cell division control protein 48 [Methanosarcina acetivorans C2A]
          Length = 753

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 39/166 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ +A   + ++ +                     + +  D    D
Sbjct: 209 PPKGVLLHGPPGTGKTMIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFDEAEKD 268

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 269 APSIIFIDEIDSIAPKRGEVTGEMERRVVAQLLSLMDGLKSRGEVVVIAATNRPNSIDEA 328

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L       +       ++I +PD +   +++  +   R + ++ ++
Sbjct: 329 LR------RGGRFDREIEIGIPDRNGRRQIL--LIHTRGMPLEDEV 366



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G+GK+ LA   + +S +   S     L S  +   +  + E
Sbjct: 481 PPRGVLLFGPPGTGKTLLAKAVASESEANFISIKGPELLSKYVGESERAIRE 532


>gi|323475288|gb|ADX85894.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
 gi|323478013|gb|ADX83251.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
          Length = 769

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + ++L GP G GK+ LA   ++++ +              +    + L  I  D +K 
Sbjct: 225 PPKGILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 284

Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPV----- 149
               + +++ID +    ++           QL  +++ +    + +++ A   P      
Sbjct: 285 APAIIFVDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPSAVDPA 344

Query: 150 ---------SWGVCLPDLCSRL 162
                       + LPD   RL
Sbjct: 345 LRRPGRFDREIEIPLPDKQGRL 366



 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 498 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 529


>gi|256390085|ref|YP_003111649.1| ATPase AAA [Catenulispora acidiphila DSM 44928]
 gi|256356311|gb|ACU69808.1| AAA ATPase central domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 505

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 43/216 (19%)

Query: 23  NKEEQLFFSFPRCLGISRDDLLVHSA------------IEQAVRLIDSWPSWPSRVVILV 70
               Q    F     + R++L++                     L+        R V+L 
Sbjct: 228 FGPHQSALGFHDRPVMDREELILPPGMLEGIEAQILGVNRHRETLLAHGQH-LKRGVLLF 286

Query: 71  GPSGSGKSCLANIWSDK----------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           GP G+GK+        +          + + R    A  +   L      V++ED+DL+ 
Sbjct: 287 GPPGTGKTHTVRYLMSRLPETTVVVLTASALRLIGQACEIARALQPA--LVVVEDVDLIA 344

Query: 121 FNDTQ-------LFHIINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV-V 168
            + +        LF ++N +       D + L+T            P L  R       V
Sbjct: 345 QDRSAHMTATPLLFQLLNEMDGLDGDADVTFLLTT----NRIDTLEPALAMRPGRVDHAV 400

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           ++ LPD +   +++        + +D   A  +++R
Sbjct: 401 EVPLPDAEGRARLLE--LYRGSLDLDLSSADTLIER 434


>gi|238061465|ref|ZP_04606174.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149]
 gi|237883276|gb|EEP72104.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149]
          Length = 671

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 43/210 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 208 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKSNAPAI 267

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 268 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDTKGGVILIAATNRPDILDPAL 327

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD +  + ++      +    D  L   + +R       A
Sbjct: 328 ------LRPGRFDRQIPVDAPDMEGRKAILRVHAKGKPFTPDVDL-DSVARRTP-GFSGA 379

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             L + ++  AL       R++  + L+E+
Sbjct: 380 -DLANVINEAALLTARKDQRAITNDSLEES 408


>gi|150400075|ref|YP_001323842.1| replication factor C large subunit [Methanococcus vannielii SB]
 gi|166977386|sp|A6URV8|RFCL_METVS RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|150012778|gb|ABR55230.1| AAA ATPase central domain protein [Methanococcus vannielii SB]
          Length = 492

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 23/170 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPV 111
           V+L GP GSGK+ +A+  ++          A                +    L   R  +
Sbjct: 42  VLLFGPPGSGKTTMAHAIANDYNFDVIELNASDKRNKDVISQVVGTAATSKSLTGKRTLI 101

Query: 112 LLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           +L+++D L  ND    +  II  +   ++ +++TA        V  P L S   + T+V 
Sbjct: 102 VLDEVDGLSGNDDRGGVSEIIKVLKNAENPVILTAN------DVYKPALSSLRNSVTMVD 155

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
                 + +  V+ K+       ID+K+   I       L  A   +  +
Sbjct: 156 AGSVHTNSIPPVLRKIALKEGFEIDEKVIKLISSHAGGDLRAAINDLQAL 205


>gi|257051069|sp|P23787|TERA_XENLA RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER
           ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit;
           Short=p97; AltName: Full=Valosin-containing protein;
           Short=VCP
 gi|28422362|gb|AAH46949.1| Vcp-prov protein [Xenopus laevis]
          Length = 805

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID-- 354

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 355 -PALR-RFGRFDREVDIGIPDSTGRLEILQ--IHTKNMKLSDDV 394



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|156119445|ref|NP_001095217.1| transitional endoplasmic reticulum ATPase [Xenopus laevis]
 gi|64966|emb|CAA38146.1| p97 subunit of 15S Mg(2+)- ATPase [Xenopus laevis]
          Length = 805

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID-- 354

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 355 -PALR-RFGRFDREVDIGIPDSTGRLEILQ--IHTKNMKLSDDV 394



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|307299319|ref|ZP_07579120.1| Holliday junction DNA helicase RuvB [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915115|gb|EFN45501.1| Holliday junction DNA helicase RuvB [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 349

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 34/179 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            +L GP G GK+ LA+I +++  S  +      ++           LE  D+L  ++   
Sbjct: 56  TLLAGPPGLGKTTLAHIIANELGSEIYVTSGPVIEKQGDLAAILTGLERDDVLFIDEI-- 113

Query: 127 FHIINSIHQYDSSLLMTA----------RTFPVSWGVCLPDL----------CS------ 160
            H +N   +    +L +A             P +  + L DL           S      
Sbjct: 114 -HRLNRSVEE---ILYSAMEDFQLDIMIGKGPSARSIRL-DLNPFTLVGATTRSGFIGAP 168

Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            R +   ++++    D  L+++I++        I    A  + +R   +   A +L+ +
Sbjct: 169 LRNRFGMILEMEFYPDRDLKQIILRSATLLGTSIRDDAALLLARRSRGTPRIANRLLRR 227


>gi|254805040|ref|YP_003083261.1| hypothetical protein NMO_1076 [Neisseria meningitidis alpha14]
 gi|254668582|emb|CBA06099.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
          Length = 436

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|26350207|dbj|BAC38743.1| unnamed protein product [Mus musculus]
          Length = 451

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395

Query: 211 FAE 213
            A+
Sbjct: 396 GAQ 398


>gi|47076477|dbj|BAD18143.1| transposase B of IS643 [Bacillus halodurans]
          Length = 254

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GP G GK+ +A     ++ +  F+    ++  ++                  + + 
Sbjct: 104 LILLGPPGIGKTYIAIGLGLEAVNRGFNVYFVTMGELVQLLKTEEYLNKSKVQLKRMRSA 163

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             V+++D+  +  +  +    FH+IN +++  SS+++T+   P  WG  + D
Sbjct: 164 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPDEWGNLIGD 214


>gi|295110953|emb|CBL27703.1| Recombination protein MgsA [Synergistetes bacterium SGP1]
          Length = 446

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 69/192 (35%), Gaps = 28/192 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           +I  GP G GK+ LA + + ++R+                + + ++ +   +  R  V +
Sbjct: 52  MIFWGPPGVGKTTLAGVIAQRTRAAFINFSAVTSGIKEIRAVMQRAEEGRRLGGRTIVFV 111

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ V    L SR     V  +   
Sbjct: 112 DEIHRFNKAQQDAFLPF---VERGSIVLIGATTENPSFEVNGA-LLSR---CRVFVLKAL 164

Query: 174 DDDFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDK--MDNLALS 225
             + L  ++ +  +D R +      +   +   I          A   ++   ++     
Sbjct: 165 TAEELAGLLSRALSDPRGLGRYRAEVAPDMLNAIATFANGDARAALSTLEMAVLNGEPCG 224

Query: 226 RGMGITRSLAAE 237
            G+ +T  + A+
Sbjct: 225 NGIRVTEEMLAQ 236


>gi|289578776|ref|YP_003477403.1| ATPase AAA [Thermoanaerobacter italicus Ab9]
 gi|289528489|gb|ADD02841.1| AAA ATPase central domain protein [Thermoanaerobacter italicus Ab9]
          Length = 443

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ LA I ++ + S    FS +   +  I     K     ++D +    T
Sbjct: 56  MILWGPPGVGKTTLAMIIANMTNSKFVTFSAVLSGIKEIKEIMAKA----ELDAMHGTRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  + +L+ A T   S+ V    L SR   + V  +  
Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167

Query: 173 PDDDFLEKVIVKMFADRQ 190
              + L  ++ +   D Q
Sbjct: 168 LTKEDLLILLKRALKDEQ 185


>gi|124004296|ref|ZP_01689142.1| transposase B of [Microscilla marina ATCC 23134]
 gi|123990366|gb|EAY29865.1| transposase B of [Microscilla marina ATCC 23134]
          Length = 247

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 29/132 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI------------------DTR 108
           VIL+GPSG+GK+ +A   +  +    +  I ++++ +                       
Sbjct: 103 VILMGPSGTGKTFIAAGLAYLALKAGYKAIFRTMEDLARILKLSDMTKNNRAQYNACVKA 162

Query: 109 KPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS--- 160
           + ++++D+ +          LFH+I+++H+  SS+++T    P  W   L D  L +   
Sbjct: 163 ELLVIDDLMMFPIEKKVGQMLFHLIDTLHE-KSSVIITTNKSPKEWAEALDDQVLATAML 221

Query: 161 -RLKA-ATVVKI 170
            RL   A VV++
Sbjct: 222 DRLLHRAQVVQL 233


>gi|83590492|ref|YP_430501.1| recombination factor protein RarA [Moorella thermoacetica ATCC
           39073]
 gi|83573406|gb|ABC19958.1| Recombination protein MgsA [Moorella thermoacetica ATCC 39073]
          Length = 441

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 73/203 (35%), Gaps = 39/203 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK---------PVL 112
           +IL GP GSGK+ LA I +  +R+         +    +  ++   R+          + 
Sbjct: 55  IILWGPPGSGKTTLARIIATMTRAHFEALNAVLDGINDIRRVIAAAREREKYYQQKTVIF 114

Query: 113 LEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     N    L        +    +L+ A      + V    + SR   + + ++ 
Sbjct: 115 VDEIHRWAKNIQDALL----PCVEEGLLILIGATIENPMFTVNAA-IRSR---SRIFRLE 166

Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              D  +  ++ +  AD  R +       D +   ++ +        A   ++ ++   L
Sbjct: 167 ALSDAAILTLLRRALADAERGLGKFNVQADPEALEHLARVAN---GDARVALNALEFAVL 223

Query: 225 ------SRGMGITRSLAAEVLKE 241
                 S    +T  +A E +++
Sbjct: 224 TTAPDTSGRRHLTLEVAEEAIQQ 246


>gi|228470835|ref|ZP_04055683.1| ATPase, AAA family [Porphyromonas uenonis 60-3]
 gi|228307508|gb|EEK16513.1| ATPase, AAA family [Porphyromonas uenonis 60-3]
          Length = 436

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 37/186 (19%)

Query: 26  EQLFFSFPRCLGISRDDLLVH-----SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           EQ+  +         +   V       A      +++         +IL GP G GK+ L
Sbjct: 4   EQIPLAERMRPKTLEE--YVGQSHLVGANAPLRVMLER---GHIPSMILWGPPGVGKTTL 58

Query: 81  ANIWSD--KSRSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLLDFN 122
           A + S   + R    S +   +  +    ++                 + +++I     +
Sbjct: 59  ARLLSQLMQCRCYSLSAVGSGVADVRKTLQEAKDAQAGLFSQHQGRPILFIDEIHRFSKS 118

Query: 123 DT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
               L     +  +     L+ A T   S+ V  P L SR     V  +   +D  L ++
Sbjct: 119 QQDSLL----AAVEQGVVTLIGATTENPSFQVIRP-LLSR---CQVFVLKPLEDSDLSQL 170

Query: 182 IVKMFA 187
           I ++FA
Sbjct: 171 IDRVFA 176


>gi|190149782|ref|YP_001968307.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189914913|gb|ACE61165.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 446

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 35/202 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 52  MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 161

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  + +V+     D  R +     +I+  +   +   +     FA   ++ M ++A
Sbjct: 162 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 221

Query: 224 LS--RGMGITRSLAAEVLKETQ 243
               +G  + ++L AEVL E Q
Sbjct: 222 EISPQGKHLNKALLAEVLGERQ 243


>gi|148981576|ref|ZP_01816463.1| hypothetical protein VSWAT3_04716 [Vibrionales bacterium SWAT-3]
 gi|145960819|gb|EDK26153.1| hypothetical protein VSWAT3_04716 [Vibrionales bacterium SWAT-3]
          Length = 449

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 71/202 (35%), Gaps = 44/202 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + ++ + +   R S +   +  I I   K       +      T
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIEKA----RENKQAGRRT 109

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V K+
Sbjct: 110 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 163

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL------ 224
           +  + D +  VI +   D+Q  +    A +    ++R      +LV+    ++L      
Sbjct: 164 TSLNTDDIATVIRQAIEDKQRGLGDVPAHFADNVLDR----LAELVNGDARMSLNYLELL 219

Query: 225 --------SRGMGITRSLAAEV 238
                        IT  L AEV
Sbjct: 220 YDMAEDNDKGEKAITLQLLAEV 241


>gi|328771508|gb|EGF81548.1| hypothetical protein BATDEDRAFT_29838 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 480

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 37/198 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR--------------STRFSNIAKSLDSILIDTRKP 110
             +IL GP GSGK+ LA I + +                  R S         L   +  
Sbjct: 129 PCMILWGPPGSGKTTLARIIAKELGVHFKEMSATIHNVSDVRKSCEEARTQRKLTGKKSI 188

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + L++I          F       +      + A T   S+ V    L SR     V  +
Sbjct: 189 LFLDEIHRFTKAQQDFFLP---PVEQGEFTFIAATTENPSFRVNAA-LLSR---CKVFVM 241

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---R-SLVFAEKLVD-----KMDN 221
              +   L +++          I   + AYI    +   R S+   E  +D     K+D 
Sbjct: 242 DKYESASLCQILRHSP----FVIPDNVIAYISTMCDGDARVSINALEMALDAAVHSKLDQ 297

Query: 222 LALSRGMGITRSLAAEVL 239
           L L     +  +L+   L
Sbjct: 298 LTLP---AVQLALSKSHL 312


>gi|313898685|ref|ZP_07832220.1| replication-associated recombination protein A [Clostridium sp.
           HGF2]
 gi|312956569|gb|EFR38202.1| replication-associated recombination protein A [Clostridium sp.
           HGF2]
          Length = 441

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 28/194 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I + ++++    FS +   +  I    ++    ED   L    T
Sbjct: 53  MIFWGPPGVGKTTLARIIARQTQAHFINFSAVTSGIREIKAVMKEA---EDA-RLYGRKT 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  S +L+ A T   S+ V    L SR K   +  + +
Sbjct: 109 IVFVDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEVNAA-LLSRCKVFVLKALEV 167

Query: 173 PD-DDFLEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK--MDNLALSRG 227
            D  + L+  +   + F  + + I ++    +          A   ++   ++  +   G
Sbjct: 168 SDLVELLKHALQDERGFGSQHVLITEEQLHMLAVFANGDARTALNTLEMVVLNGESSEAG 227

Query: 228 MGITRSLAAEVLKE 241
           + IT     EVL++
Sbjct: 228 IVIT----KEVLEQ 237


>gi|304391485|ref|ZP_07373427.1| replication-associated recombination protein A [Ahrensia sp.
           R2A130]
 gi|303295714|gb|EFL90072.1| replication-associated recombination protein A [Ahrensia sp.
           R2A130]
          Length = 440

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 27/191 (14%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILID 106
                R++++        ++  GP GSGK+ +A + +D+      + S I   +  +   
Sbjct: 44  NGALRRMLEAP---SLGSMVFWGPPGSGKTTVARLLADEGEHHFEQISAIFTGVADLKKV 100

Query: 107 TRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVC 154
             +      I   +   T LF    H  N           +  +  L+ A T   S+ + 
Sbjct: 101 FEQA----RIRAGNGRRTLLFVDEIHRFNRAQQDSFLPVMEDGTITLIGATTENPSFELN 156

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFA 212
              L SR   A V+     DDD L  ++ +      R + +       +++  +      
Sbjct: 157 AAVL-SR---ARVLTFRPHDDDSLRSLMARAETTEGRALPLTDDARESLLRMADGDGRAV 212

Query: 213 EKLVDKMDNLA 223
             L+++    A
Sbjct: 213 LTLIEEAWRAA 223


>gi|269102237|ref|ZP_06154934.1| putative ATPase protein [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162135|gb|EEZ40631.1| putative ATPase protein [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 447

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 40/200 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA + ++ + +                + I K+ D+ +   R  + +
Sbjct: 52  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIDKARDNKMAGRRTILFV 111

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  +   + A T   S+ +    L SR   A V K+ 
Sbjct: 112 DEVHRFNKSQQDAFLPHI-----EDGTVTFIGATTENPSFELNNA-LLSR---ARVYKLK 162

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIV------QRMERSLVFAEKLVDK 218
             + + + +V+ +   D  R      +     +   +        RM  SL + E+L+D 
Sbjct: 163 SLEKEEILEVLDQALNDKERGVSDTNLNFVDDVKERLADLVCGDARM--SLNYLEQLIDM 220

Query: 219 MDNLALSRGMGITRSLAAEV 238
            +  +      IT  L AEV
Sbjct: 221 AEEDS-KGIKQITLPLLAEV 239


>gi|256964749|ref|ZP_05568920.1| AAA ATPase [Enterococcus faecalis HIP11704]
 gi|307272829|ref|ZP_07554076.1| recombination factor protein RarA [Enterococcus faecalis TX0855]
 gi|256955245|gb|EEU71877.1| AAA ATPase [Enterococcus faecalis HIP11704]
 gi|306510443|gb|EFM79466.1| recombination factor protein RarA [Enterococcus faecalis TX0855]
          Length = 425

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q + R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRTTNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|330815819|ref|YP_004359524.1| AAA ATPase, central region [Burkholderia gladioli BSR3]
 gi|327368212|gb|AEA59568.1| AAA ATPase, central region [Burkholderia gladioli BSR3]
          Length = 436

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 19/175 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + ++       +  A       I        + +   +   T L
Sbjct: 50  MILWGPPGVGKTTLARLTANAFDCEFIALSAVLGGVKDIREAMEQAKDTLHR-NGRHTIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +   D
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLD 164

Query: 175 DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           D  + +++ +    A   +  + K    ++   +        L+++    ALS  
Sbjct: 165 DAEMRQLLARAQQIALDGLTFEDKAVDTLIGYADGDARRFLNLLEQAQTAALSAR 219


>gi|325128338|gb|EGC51222.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           N1568]
          Length = 436

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|255505880|ref|ZP_05348636.3| transcriptional regulator, LuxR family [Bryantella formatexigens
           DSM 14469]
 gi|255265338|gb|EET58543.1| transcriptional regulator, LuxR family [Bryantella formatexigens
           DSM 14469]
          Length = 730

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLDFN 122
           V  L G +G+GK+ LA     + +   +S      + +        + V+++D+  +   
Sbjct: 40  VAYLYGVTGTGKTRLAREVLARKQYEYYSARETQPEEVGVKPDGQERIVVVDDLYTVTLQ 99

Query: 123 D-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           +       LF       Q    L++ +R     W + L
Sbjct: 100 EIKECWAALFR--KLAGQEGVRLVLVSRAPVPGWLLPL 135


>gi|224133614|ref|XP_002321618.1| predicted protein [Populus trichocarpa]
 gi|222868614|gb|EEF05745.1| predicted protein [Populus trichocarpa]
          Length = 813

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 246 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 305

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 306 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 363

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + +++
Sbjct: 364 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEEV 403



 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 519 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 575


>gi|213418771|ref|ZP_03351837.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 182

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 16/92 (17%)

Query: 8   YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54
           ++   P +    QP+                 +  +     +  + D+ +   + + A  
Sbjct: 69  HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 128

Query: 55  LIDSWPSWPSRV---VILVGPSGSGKSCLANI 83
                   P      + L G +G GK+ L + 
Sbjct: 129 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHA 160


>gi|168048981|ref|XP_001776943.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671644|gb|EDQ58192.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 821

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 250 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 309

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 310 APAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 367

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 368 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHSKNMKLAEDV 407



 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D    
Sbjct: 523 PSKGVLFYGPPGCGKTMLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARG 581


>gi|228969158|ref|ZP_04130055.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228790541|gb|EEM38245.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 225

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 24/126 (19%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104
            A++ + ++  W    +++ G  G+GK+ LA    ++     +  + +S+  +L      
Sbjct: 60  IAMKYVKTFKEWNGESLMIWGDPGNGKTHLAAAIVNELSEKGYIVVFQSVPELLQRIRST 119

Query: 105 ---------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTART 146
                          +     ++L+DI      ++ + +LF+II+  ++ +   L T+  
Sbjct: 120 FNSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNL 179

Query: 147 FPVSWG 152
            P    
Sbjct: 180 EPKELK 185


>gi|209878626|ref|XP_002140754.1| 26S proteasome regulatory subunit 6A [Cryptosporidium muris RN66]
 gi|209556360|gb|EEA06405.1| 26S proteasome regulatory subunit 6A, putative [Cryptosporidium
           muris RN66]
          Length = 425

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 67/181 (37%), Gaps = 40/181 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 204 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFQIAREK 263

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A   P + 
Sbjct: 264 APAIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRPDTL 323

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     V++  P++D    ++      R++ +DK    +  Q + RS  
Sbjct: 324 DPAL--LRSGRLD--RKVELPHPNEDARAHILQ--IHSRKMNVDKNDVNF--QELARSTD 375

Query: 211 F 211
            
Sbjct: 376 D 376


>gi|109069427|ref|XP_001090335.1| PREDICTED: ATPase WRNIP1 isoform 1 [Macaca mulatta]
          Length = 640

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 16/88 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQYDSSLL 141
             F           H  N   Q +++LL
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQVNAALL 344


>gi|98962497|gb|ABF59516.1| putative spindle disassembly related protein CDC48 [Nicotiana
           tabacum]
          Length = 808

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + +++
Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEEV 398



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570


>gi|269960797|ref|ZP_06175168.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834461|gb|EEZ88549.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 449

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            D D +   + +  +D  R +          +   +        RM  SL + E L D  
Sbjct: 166 LDKDEISLALNQAISDKERGLGNTPALFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223

Query: 220 DNLALSRGMGITRSLAAEV 238
           ++ A      IT  L AEV
Sbjct: 224 EDNA-QGEKEITLKLLAEV 241


>gi|315230875|ref|YP_004071311.1| cell division protein FtsH [Thermococcus barophilus MP]
 gi|315183903|gb|ADT84088.1| cell division protein FtsH [Thermococcus barophilus MP]
          Length = 834

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 62/162 (38%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  +  +  + 
Sbjct: 243 PPKGVLLYGPPGTGKTLLAKAVANETNAHFIAINGPEIMSKFYGESEERLREVFKEAEEN 302

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 303 APSIIFIDEIDAIAPKREEVTGEVEKRVVSQLLTLMDGLKKRGKVIVIAATNRPDAID-- 360

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    +++ +PD    ++++      R + ++  
Sbjct: 361 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPLEPD 399



 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 89/247 (36%), Gaps = 55/247 (22%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSW-------PSRVVILVGPSGSGKSCLANIWSDKSRST 91
             +D  V  A+ +AV     +P         P + ++L GP G+GK+ LA   + +S + 
Sbjct: 549 GLED--VKQALREAVEWPLKYPKAFQRLGINPPKGILLYGPPGTGKTMLAKAVATESEAN 606

Query: 92  ------------RFSNIAKSLDSILIDTRKP----VLLEDIDLLD---FND--------- 123
                             K +  I    R+     V +++ID +     +D         
Sbjct: 607 FIGIRGPEVLSKWVGESEKRIREIFRKARQAAPTVVFIDEIDAIAPMRGSDVNRVTDRII 666

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC----SRLKAATVVKISLPDDDFLE 179
            QL   ++ + +    +++ A   P      L  L      RL     + +  PD+    
Sbjct: 667 NQLLTEMDGLEENSGVVVIAATNRPDILDPAL--LRPGRFDRL-----ILVPAPDEKARY 719

Query: 180 KVIVKMFADRQIFIDKKL-AAYIVQRME-RSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
           +++      R++ + + +    + +R+E  +      LV      A++        +  E
Sbjct: 720 EILKVH--TRRVPLAEDVNLKELAKRLEGYTGADIAALVR---EAAMNALRRTVAKIPRE 774

Query: 238 VLKETQQ 244
           +++E  +
Sbjct: 775 LIEEQSE 781


>gi|190410106|ref|YP_001965630.1| hypothetical protein [Sinorhizobium meliloti]
 gi|125631136|gb|ABN47137.1| hypothetical protein [Sinorhizobium meliloti SM11]
          Length = 270

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 57/165 (34%), Gaps = 37/165 (22%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----- 83
            F F           +V  A   A+   D W    +  ++L G  G GKS LA       
Sbjct: 79  TFDFTAVP-------MVSKARVMALVAGDVWLKNGAN-LMLFGGPGGGKSHLAAAIGAGL 130

Query: 84  ----WS----------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---L 126
               W            K ++ R  N+        +D    ++L+D+  +  +  +   L
Sbjct: 131 IENGWRVLFTRTTDLVQKLQAAR-RNLDLEGAIAKLDKYHLLVLDDMAYVSKDQAETSVL 189

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           F +I S      SLL+TA      W    PD     KA T+  I 
Sbjct: 190 FELI-SARYERRSLLITANQPFGEWDKVFPD-----KAMTLAAID 228


>gi|186475407|ref|YP_001856877.1| recombination factor protein RarA [Burkholderia phymatum STM815]
 gi|184191866|gb|ACC69831.1| AAA ATPase central domain protein [Burkholderia phymatum STM815]
          Length = 453

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +D   +   +    ++ S + D R+ V    I   + + T +
Sbjct: 65  MILWGPPGVGKTTLARLMADAFHAQFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 122

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +    + + A T   S+ V    L SR   A+V  +   D
Sbjct: 123 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---ASVYVLKSLD 178

Query: 175 -DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGI 230
            D+  E +         + +  +    ++   +   R L+   ++V +    A  +   I
Sbjct: 179 TDEQRELLARAQQELGGLTLTDEARDALIGSADGDGRKLLNNMEIVAR--AAARQKKTEI 236

Query: 231 TRSLAAEVLKE 241
              L A  L E
Sbjct: 237 DGELLASALSE 247


>gi|297829516|ref|XP_002882640.1| hypothetical protein ARALYDRAFT_478309 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328480|gb|EFH58899.1| hypothetical protein ARALYDRAFT_478309 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 809

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 240 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 300 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 357

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 358 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 397



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 513 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569


>gi|238879198|gb|EEQ42836.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 678

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 73/256 (28%), Gaps = 58/256 (22%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLG-ISRDDLL-----VHSAIEQAVRLIDSWPSWPSRVVIL 69
           QK  + K  + Q        L   S DD       V         +I +         +L
Sbjct: 150 QKAKEIKELKRQASIPLAHRLRPKSLDDFFGQEKLVGE-NGALRNIIQAD---IIPSFLL 205

Query: 70  VGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            G  G GK+ LA I +  +       +   + AK L  + +        E+   L    T
Sbjct: 206 WGVPGIGKTSLARIIAKTTSCKFVELSGIDSNAKRLKEVFVQA------ENHKNLSGQRT 259

Query: 125 QLF----HIINSIHQYDSSLLM-------------TARTFPVSWGVCLPDLCSRLKAATV 167
            LF    H  N   Q    LL+             T      +       L SR+     
Sbjct: 260 ILFLDEIHRFNKAVQD---LLLPVIEKGTLTVIGATTENPSFNLNNA---LLSRM---HT 310

Query: 168 VKISLPD-DDFLEKVIVKMFADRQ----------IFIDKKLAAYIVQRMERSLVFAEKLV 216
             +     D  ++ +   +F   +          I + K    YI +        A  ++
Sbjct: 311 FVMEPLTVDSLIKILTRALFEVNRVRKNLYGLHYISLQKDAYHYIAELCMGDSRVALNIL 370

Query: 217 DKMDNLALSRGMGITR 232
           + ++    +     T 
Sbjct: 371 ETINAYLSADKFKSTV 386


>gi|284991584|ref|YP_003410138.1| AAA ATPase central domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284064829|gb|ADB75767.1| AAA ATPase central domain protein [Geodermatophilus obscurus DSM
           43160]
          Length = 445

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSI------------LIDTRKPVL 112
           ++L GP G+GK+ LA++   + K +  + S +   +  +                R  + 
Sbjct: 58  LVLYGPPGTGKTTLAHVISLATKRQFVQLSALDAGVKEVRAVIASAKRELTYAGRRTVLF 117

Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++++          L     S  +     L+ A T    + V  P L SR   + V+ + 
Sbjct: 118 IDEVHRFSKTQQDSLL----SAVEDRIVSLIAATTENPFFSVVSP-LLSR---SLVLALQ 169

Query: 172 LPDDDFLEKVIVKMF-ADRQI----FIDKKLAAYIVQ 203
              DD +  ++ +   +DR +     +  +   ++V+
Sbjct: 170 PLSDDDVRSLLRRALTSDRGLDGAVTLSPEAEEHLVR 206


>gi|15897129|ref|NP_341734.1| AAA ATPase family protein [Sulfolobus solfataricus P2]
 gi|284174370|ref|ZP_06388339.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
 gi|13813310|gb|AAK40524.1| AAA family ATPase [Sulfolobus solfataricus P2]
 gi|261601791|gb|ACX91394.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2]
          Length = 769

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + ++L GP G GK+ LA   ++++ +              +    + L  I  D +K 
Sbjct: 225 PPKGILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 284

Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPV----- 149
               + +++ID +    ++           QL  +++ +    + +++ A   P      
Sbjct: 285 APAIIFVDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPSAVDPA 344

Query: 150 ---------SWGVCLPDLCSRL 162
                       + LPD   RL
Sbjct: 345 LRRPGRFDREIEIPLPDKQGRL 366



 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 498 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 529


>gi|15232776|ref|NP_187595.1| CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding
           [Arabidopsis thaliana]
 gi|1705677|sp|P54609|CD48A_ARATH RecName: Full=Cell division control protein 48 homolog A;
           Short=AtCDC48a
 gi|6681343|gb|AAF23260.1|AC015985_18 putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|1019904|gb|AAC49120.1| cell division cycle protein [Arabidopsis thaliana]
 gi|17473551|gb|AAL38252.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|20453130|gb|AAM19807.1| AT3g09840/F8A24_11 [Arabidopsis thaliana]
 gi|110735114|gb|ABG89127.1| CDC48a [synthetic construct]
 gi|222424942|dbj|BAH20422.1| AT3G09840 [Arabidopsis thaliana]
 gi|332641299|gb|AEE74820.1| cell division control protein 48-A [Arabidopsis thaliana]
          Length = 809

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 240 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 300 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 357

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 358 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 397



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 513 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569


>gi|14590568|ref|NP_142636.1| cell division control [Pyrococcus horikoshii OT3]
 gi|3257095|dbj|BAA29778.1| 840aa long hypothetical cell division control protein (transitional
           endoplasmic reticulum ATPase) [Pyrococcus horikoshii
           OT3]
          Length = 840

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  I  +  + 
Sbjct: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKGRGKVIVIGATNRPDALD-- 362

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    +++ +PD    ++++      R + I+  
Sbjct: 363 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPIEPD 401



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 45/202 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + V+L GP G+GK+ LA   + +S +   +               K +  I    R+ 
Sbjct: 580 PPKGVLLYGPPGTGKTLLAKAVATESEANFIAVRGPEVLSKWVGESEKRIREIFRKARQA 639

Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID +                  QL   ++ + +    +++ A   P     
Sbjct: 640 APAIIFIDEIDAIAPARGTSEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDP 699

Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERS 208
            L  L      RL     + +  PD++   ++       R + +   +    + +R E  
Sbjct: 700 AL--LRPGRFDRL-----ILVPAPDEEARFEIFKVHT--RSMPLADDVDLRELARRTEGY 750

Query: 209 LVFAEKLVDKMDNLALSRGMGI 230
                  V +    AL+    +
Sbjct: 751 TGADIAAVCR--EAALNALRRV 770


>gi|321471444|gb|EFX82417.1| hypothetical protein DAPPUDRAFT_316737 [Daphnia pulex]
          Length = 759

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 32/155 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P R  +L GP G GK+ LA+  + +     F   A  L S +    +             
Sbjct: 214 PPRGFLLHGPPGCGKTLLAHAIAGELEIPFFKVAAPELVSGVSGESEEQIRFLFEQATSS 273

Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
               + +++ID +            +  + +  ++            C+ DL SR +   
Sbjct: 274 APCIIFIDEIDAITPKRET------AQREMERRIV-------AQLLTCMDDLSSRDRNIP 320

Query: 167 VVKISLPD--DDFLEKVIVKMFADRQIFID-KKLA 198
           V+ I   +  D     +      DR+I +    LA
Sbjct: 321 VLVIGATNRPDALDPALRRAGRFDREISLGIPDLA 355



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 516 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGESERAV 564


>gi|282882872|ref|ZP_06291477.1| replication-associated recombination protein A [Peptoniphilus
           lacrimalis 315-B]
 gi|281297283|gb|EFA89774.1| replication-associated recombination protein A [Peptoniphilus
           lacrimalis 315-B]
          Length = 429

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 32/202 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLL 119
             ++  GP G GK+ LA I ++ +        A +     L  +L   +      +I+ +
Sbjct: 46  NSLLFYGPPGVGKTTLAKIIANLTNKNFVELSAVTSNIKELREVLNKAQDDFKFSNIETI 105

Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            F ++    H  N           +    +L+ A T    + V    L SRL+   +  +
Sbjct: 106 VFIDEI---HRFNKTQQDALLPYVERGIIILIGATTENPYFEVNKA-LLSRLQILNLTAL 161

Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              D   + K+I +  +D+       +I + +K   ++++    S      L++ ++   
Sbjct: 162 ENKD---MNKLIDRAISDKIKGFGNLKINLSEKAREFLIRN---SSGDGRFLLNSLEIAV 215

Query: 224 LSRGMGIT-RSLAAEVLKETQQ 244
           LS        +L  +VL+ + Q
Sbjct: 216 LSTDKVDNEVNLTLDVLENSMQ 237


>gi|332195805|gb|AEE33926.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
          Length = 1043

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 48/153 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------SNIAKSLDSILIDTRKP---- 110
           P   ++L GPSG+GK+ LA   + ++ +           S   K + ++     K     
Sbjct: 787 PCNGILLFGPSGTGKTMLAKAVATEAGANLINMSMSRWFSEGEKYVKAVFSLASKISPSI 846

Query: 111 VLLEDIDLLDFNDTQLFH----------IIN----SIHQYDSSLLMTA------------ 144
           + L++++        + H          IIN      ++ +  L++ A            
Sbjct: 847 IFLDEVES-------MLHRYRLKTKNEFIINWDGLRTNEKERVLVLAATNRPFDLDEAVI 899

Query: 145 RTFPVSWGVCLPDLCSR---LKAATVVKISLPD 174
           R  P    V LPD  SR   LK     +   PD
Sbjct: 900 RRLPHRLMVGLPDARSRSKILKVILSKEDLSPD 932


>gi|326934708|ref|XP_003213427.1| PREDICTED: transitional endoplasmic reticulum ATPase-like, partial
           [Meleagris gallopavo]
          Length = 674

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 123 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 182

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 183 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 242

Query: 155 L 155
           L
Sbjct: 243 L 243



 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 378 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 434


>gi|307260915|ref|ZP_07542601.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869482|gb|EFN01273.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 443

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 49  MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 104

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 105 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 158

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  + +V+     D  R +     +I+  +   +   +     FA   ++ M ++A
Sbjct: 159 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 218

Query: 224 LS--RGMGITRSLAAEVLKETQQ 244
               +G  + ++L AEVL E Q 
Sbjct: 219 EISPQGKHLNKALLAEVLGERQA 241


>gi|255540583|ref|XP_002511356.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
 gi|223550471|gb|EEF51958.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
          Length = 804

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 246 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 305

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 306 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 363

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + +++
Sbjct: 364 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEEV 403



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 509 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 565


>gi|42562879|ref|NP_176404.2| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 1025

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 48/153 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------SNIAKSLDSILIDTRKP---- 110
           P   ++L GPSG+GK+ LA   + ++ +           S   K + ++     K     
Sbjct: 769 PCNGILLFGPSGTGKTMLAKAVATEAGANLINMSMSRWFSEGEKYVKAVFSLASKISPSI 828

Query: 111 VLLEDIDLLDFNDTQLFH----------IIN----SIHQYDSSLLMTA------------ 144
           + L++++        + H          IIN      ++ +  L++ A            
Sbjct: 829 IFLDEVES-------MLHRYRLKTKNEFIINWDGLRTNEKERVLVLAATNRPFDLDEAVI 881

Query: 145 RTFPVSWGVCLPDLCSR---LKAATVVKISLPD 174
           R  P    V LPD  SR   LK     +   PD
Sbjct: 882 RRLPHRLMVGLPDARSRSKILKVILSKEDLSPD 914


>gi|298674999|ref|YP_003726749.1| AAA family ATPase [Methanohalobium evestigatum Z-7303]
 gi|298287987|gb|ADI73953.1| AAA family ATPase, CDC48 subfamily [Methanohalobium evestigatum
           Z-7303]
          Length = 758

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 43/164 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   +++S +   S                 I +  D    +T   
Sbjct: 248 VLLQGPPGTGKTLLARAVANESDAYFISINGPEIMSKFYGESEQRIREVFDEAEKNTPAI 307

Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP-- 156
           + L+++D +                 QL  +++ + +  + +L+ A   P +  + L   
Sbjct: 308 IFLDELDSIAPKRAEVTGEVERRVVAQLLSLMDGLKERKNVILIGATNRPEALDIALRRP 367

Query: 157 ---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              D          +++ +PD +   +++      R + + + +
Sbjct: 368 GRFD--------REIELHVPDTEGRMEILQ--IHTRGMPLAEDV 401



 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
             +A R +      P  V+ L GP G+GK+ LA   +++S +   +     L
Sbjct: 506 NAEAFRRLGVEA--PKGVM-LYGPPGTGKTMLAKAVANESDANFIAAKGSDL 554


>gi|239946415|gb|ACS36235.1| cell division cycle protein 48 [Guillardia theta]
          Length = 792

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + +++ GP GSGK+ +A   ++++ +  F                 N+ K+      +
Sbjct: 230 PPKGLLMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEDNLRKAFAEAEKN 289

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 290 APSIIFIDEIDSIAPKRDKVNGEVERRIVSQLLTLMDGLKARSHIIVMAATNRPNSID-- 347

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD+    +V+      + + +   +
Sbjct: 348 -PALR-RFGRFDREVDIGVPDETGRMEVL--RIHTKNMKLSDDV 387



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ +S   S     L ++     +  + E  D  
Sbjct: 503 PSRGVLFYGPPGCGKTLLAKAIANECQSNFISIKGPELLTMWFGESEANVREVFDKA 559


>gi|256073899|ref|XP_002573265.1| cell division control protein 48 aaa family protein  [Schistosoma
           mansoni]
 gi|238658441|emb|CAZ29497.1| cell division control protein 48 aaa family protein (transitional
           endoplasmic reticulum atpase), putative [Schistosoma
           mansoni]
          Length = 803

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   +++S S  F                SN+ K+ +    +
Sbjct: 234 PPRGILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 294 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNS---V 350

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    ++I +PD   + ++ +     R I + + +
Sbjct: 351 DPALR-RFGRFDREIEIGIPD--SIGRLEILRIHTRNIRLAEDV 391



 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKA 563


>gi|242242900|ref|ZP_04797345.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis W23144]
 gi|242233675|gb|EES35987.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           epidermidis W23144]
          Length = 423

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           + D +   + +   D  R +      +D+    Y   +   S       ++ ++   LS 
Sbjct: 152 NQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    IT   A + L++
Sbjct: 209 HIDEQNERHITLDDAKDCLQK 229


>gi|195997717|ref|XP_002108727.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190589503|gb|EDV29525.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 404

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 38/182 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 184 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEK 243

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +      +   ++ A       
Sbjct: 244 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSSNEIKVIAATNRVDIL 303

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++   PD++   +++      R++ +   +    + R      
Sbjct: 304 DPAL--LRSGRLD--RKIEFPAPDEEARARILQ--IHSRKMNVSSGVNFEELARCTDDFN 357

Query: 211 FA 212
            A
Sbjct: 358 GA 359


>gi|91789641|ref|YP_550593.1| recombination factor protein RarA [Polaromonas sp. JS666]
 gi|91698866|gb|ABE45695.1| Recombination protein MgsA [Polaromonas sp. JS666]
          Length = 427

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 68/184 (36%), Gaps = 29/184 (15%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------VLL 113
           IL GP G GK+ LA + +    +     S +   +  I     +             V +
Sbjct: 43  ILWGPPGVGKTTLARLMASSFDAHFITISAVLGGVKDIREAVEQASIWQGQGGRRTIVFV 102

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +      + A T   S+ V    L SR   A V  +   
Sbjct: 103 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AVVYVLQPL 155

Query: 174 DDDFLEKVIVKMFADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM- 228
            +  L++++VK+  +R +     I       +V   +     A +L++ +++L ++    
Sbjct: 156 VEADLKRIVVKVLEERALPAIESIADAAVDRLVAYAD---GDARRLLNTLESLGVAARSE 212

Query: 229 GITR 232
            IT 
Sbjct: 213 KITV 216


>gi|295688943|ref|YP_003592636.1| AAA ATPase central domain-containing protein [Caulobacter segnis
           ATCC 21756]
 gi|295430846|gb|ADG10018.1| AAA ATPase central domain protein [Caulobacter segnis ATCC 21756]
          Length = 433

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 24/169 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ +A + + K+    F  I+     +  D +K         +    T L
Sbjct: 55  MILWGPPGTGKTTIARLLA-KAGGYEFQQISAVFSGVA-DLKKAFEQARARRMAGQSTLL 112

Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q            +L+      P          L SR     V  +  
Sbjct: 113 FVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGA---LLSR---CQVFVLKR 166

Query: 173 PDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             +D LE+++ +     +R + +D +  + +V   +    +   L + +
Sbjct: 167 LTEDSLEQLLQRAEAAENRLLPVDAEARSSLVAMADGDGRYLLTLAETL 215


>gi|229581753|ref|YP_002840152.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012469|gb|ACP48230.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.N.15.51]
          Length = 759

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + V+L GP G GK+ LA   +++  +              +    + L  I  +    
Sbjct: 224 PPKGVLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKN 283

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I      +++ A   P +    
Sbjct: 284 APAIIFIDEIDAIAPKREEVTGEVEKRVVSQLLTLMDGIKGRGKVIVIGATNRPDA---V 340

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    ++++      R + + + +
Sbjct: 341 DPALRRPGRFDREIEIRPPDAKARKEILQVHT--RNMPLAEDV 381



 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 499 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 530


>gi|27544686|dbj|BAC55038.1| DnaA [Mycobacterium abscessus]
          Length = 175

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 31  SFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
                   + +  ++ ++      A   +   P+     + + G SG GK+ L + 
Sbjct: 102 DTSLNARYTFESFVIGASNRFSHAAAVAVSEAPARAYNPLFIWGESGLGKTHLLHA 157


>gi|27544724|dbj|BAC55057.1| DnaA [Mycobacterium smegmatis]
          Length = 185

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83
             + D  ++ ++   A     +    P+R    + + G SG GK+ L + 
Sbjct: 118 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 167


>gi|88703365|ref|ZP_01101081.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88702079|gb|EAQ99182.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 126

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   +IL GP G GK+ LA +  D S S      A       I  R+ V + + +     
Sbjct: 48  PLHSMILWGPPGVGKTTLAQLLCDASGSRMVKLSAVMDGVKAI--REAVSVGEAERGAGR 105

Query: 123 DTQLFHII 130
              LF + 
Sbjct: 106 QCVLFVLW 113


>gi|305663571|ref|YP_003859859.1| AAA family ATPase, CDC48 subfamily [Ignisphaera aggregans DSM
           17230]
 gi|304378140|gb|ADM27979.1| AAA family ATPase, CDC48 subfamily [Ignisphaera aggregans DSM
           17230]
          Length = 737

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 57/163 (34%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G GK+ LA   ++++ +                     + +  D    +
Sbjct: 230 PPKGILLYGPPGCGKTLLAKALANETGAYFIPINGPEIMSKFYGESEQRLRQIFDEAKKN 289

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID L                 QL  +++ + +    +++ A   P +    
Sbjct: 290 APAIIFIDEIDALAPKREEVVGEVEKRVVAQLLTLMDGLEERGRVIVIGATNRPDA---V 346

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    +++  PD     +++      R + +   +
Sbjct: 347 DPALRRPGRFDREIEVPPPDKKARREILAVH--TRNVPLADDV 387



 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G GK+ LA   + +S +   +
Sbjct: 504 PPKGILLYGPPGCGKTLLAKAAATESGANFIA 535


>gi|220840531|emb|CAX15265.1| proteasome (prosome, macropain) 26S subunit ATPase 3 [Mus musculus]
          Length = 451

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395

Query: 211 FAE 213
            A+
Sbjct: 396 GAQ 398


>gi|157876732|ref|XP_001686709.1| Transitional endoplasmic reticulum ATPase; valosin-containing
           protein homolog [Leishmania major
 gi|68129784|emb|CAJ09090.1| putative Transitional endoplasmic reticulum ATPase [Leishmania
           major strain Friedlin]
          Length = 784

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 54/184 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 227 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 286

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
               + +++ID +                 QL  +++ +      ++M A   P      
Sbjct: 287 APSIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGMKSRSQVIVMAATNRPNTIDPA 346

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   +++I      L DD  L     K+  D   F+  
Sbjct: 347 LRRFGRFDRELDIGVPDETGRLE---IIRIHTKNMKLADDIDL----EKVAKDSHGFVGA 399

Query: 196 KLAA 199
            LA 
Sbjct: 400 DLAQ 403



 Score = 37.8 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+  GP G GK+ LA   + + ++   S     L ++     +  + +  D  
Sbjct: 500 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 556


>gi|56551017|ref|YP_161856.1| recombination factor protein RarA [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56542591|gb|AAV88745.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 449

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 88/255 (34%), Gaps = 38/255 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSR 65
               + +K   P+N+      +          D++    V        R++    +    
Sbjct: 11  LVFTENEKQPLPENRP----LADILRPK-HLSDVIGQAHVTGENGIIGRMV---AAGRLS 62

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            +IL GP G+GK+ +A + ++     RF  ++     +    +  +  E         T 
Sbjct: 63  SLILWGPPGTGKTSIAQLLAESVG-MRFEMVSAIFSGVADLKKIFLKAEH-HRQQGRQTL 120

Query: 126 LF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N           +  + +L+  T      +       L SR   A VV ++
Sbjct: 121 LFIDEIHRFNKGQQDSFLPYIENGTFVLVGATTENPSFALNAA---LLSR---AQVVTLN 174

Query: 172 LPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
             D++ L  ++ +        + +D+     ++   +    F     + +  LA++    
Sbjct: 175 RLDEEALGLLLERAETVSGQLLPVDENARKALIASADGDGRFLLNQAEIL--LAMNLTKS 232

Query: 230 ITRSLAAEVLKETQQ 244
           ++    A++L++   
Sbjct: 233 LSVPELAQILQKRMA 247


>gi|32475212|ref|NP_868206.1| recombination factor protein RarA [Rhodopirellula baltica SH 1]
 gi|32445753|emb|CAD78484.1| conserved hypothetical protein-putative a helicase [Rhodopirellula
           baltica SH 1]
          Length = 439

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 24/172 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++L GP G+GK+ LA++ + +  S   +  A S     +        + +   D    
Sbjct: 53  GSILLHGPPGTGKTTLAHLIASEQNSELITLNAISSGVKDVREVLAKARDRVSAGD-PRP 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     L+ A T    + V    L SR   + +  +  
Sbjct: 112 LLFIDEIHRFNKSQQDALLADVESGIISLIGATTSNPYFAVNAA-LISR---SQLFGLEP 167

Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVD 217
              + +  ++ +   DR        + ID+    Y+    +     A   ++
Sbjct: 168 VSVEDMRSLLKRAITDRECGLGNQNVTIDEDAIDYLSSASDGDARKALTALE 219


>gi|322503495|emb|CBZ38580.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 784

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 54/184 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 227 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 286

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
               + +++ID +                 QL  +++ +      ++M A   P      
Sbjct: 287 APAIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGMKSRSQVIVMAATNRPNTIDPA 346

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   +++I      L DD  L     K+  D   F+  
Sbjct: 347 LRRFGRFDRELDIGVPDETGRLE---IIRIHTKNMKLADDIDL----EKVAKDSHGFVGA 399

Query: 196 KLAA 199
            LA 
Sbjct: 400 DLAQ 403



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+  GP G GK+ LA   + + ++   S     L ++     +  + +  D  
Sbjct: 500 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 556


>gi|307251991|ref|ZP_07533892.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860683|gb|EFM92695.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 443

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 49  MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 104

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 105 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 158

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  + +V+     D  R +     +I+  +   +   +     FA   ++ M ++A
Sbjct: 159 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 218

Query: 224 LS--RGMGITRSLAAEVLKETQQ 244
               +G  + ++L AEVL E Q 
Sbjct: 219 EISPQGKHLNKALLAEVLGERQA 241


>gi|225011345|ref|ZP_03701798.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium
           MS024-3C]
 gi|225004507|gb|EEG42476.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium
           MS024-3C]
          Length = 239

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 14/78 (17%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66
           F +P  +        E QL          S D+ L   +   A     +  + P      
Sbjct: 125 FVIPGIRNI----KIESQL------NPNYSFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174

Query: 67  -VILVGPSGSGKSCLANI 83
            +++ G  G GK+ LA+ 
Sbjct: 175 PLLIFGGVGLGKTHLAHA 192


>gi|189065396|dbj|BAG35235.1| unnamed protein product [Homo sapiens]
          Length = 806

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLD-FND-----------TQLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + ++++D +    +           +QL  +++ + Q    ++M A   P S    
Sbjct: 297 APAIIFIDELDAIAPIREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE+V
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566


>gi|15232908|ref|NP_186894.1| cell division protein ftsH, putative [Arabidopsis thaliana]
 gi|6957708|gb|AAF32452.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
 gi|17065470|gb|AAL32889.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
 gi|30725442|gb|AAP37743.1| At3g02450 [Arabidopsis thaliana]
 gi|332640288|gb|AEE73809.1| putative cell division protein ftsH [Arabidopsis thaliana]
          Length = 622

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 37/212 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 368 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSP 427

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        +++ A   P +    L 
Sbjct: 428 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALC 487

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V ++ PD +   K++     D  +  D  L   +V  +    V A  
Sbjct: 488 RPGRFSR-----KVLVAEPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGFVGA-D 541

Query: 215 LVDKMDNLALSRGMGITRSLAAE-VLKETQQC 245
           L + ++  AL        ++A E +++  ++ 
Sbjct: 542 LANIVNEAALLAARRGGEAVAREDIMEAIERA 573


>gi|15231775|ref|NP_190891.1| cell division cycle protein 48, putative / CDC48, putative
           [Arabidopsis thaliana]
 gi|28201772|sp|Q9SCN8|CD48D_ARATH RecName: Full=Cell division control protein 48 homolog D;
           Short=AtCDC48d; AltName: Full=Transitional endoplasmic
           reticulum ATPase D
 gi|6630743|emb|CAB64226.1| CDC48-like protein [Arabidopsis thaliana]
 gi|110737510|dbj|BAF00697.1| CDC48 - like protein [Arabidopsis thaliana]
 gi|332645529|gb|AEE79050.1| cell division control protein 48-D [Arabidopsis thaliana]
          Length = 815

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 359 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 398



 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 570


>gi|18414193|ref|NP_568114.1| cell division cycle protein 48, putative / CDC48, putative
           [Arabidopsis thaliana]
 gi|28201771|sp|Q9LZF6|CD48E_ARATH RecName: Full=Cell division control protein 48 homolog E;
           Short=AtCDC48e; AltName: Full=Transitional endoplasmic
           reticulum ATPase E
 gi|26449352|dbj|BAC41803.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|26452166|dbj|BAC43171.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis
           thaliana]
 gi|30102750|gb|AAP21293.1| At5g03340 [Arabidopsis thaliana]
 gi|332003204|gb|AED90587.1| cell division control protein 48-e [Arabidopsis thaliana]
          Length = 810

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 240 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 300 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 357

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 358 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 397



 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 513 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569


>gi|332531345|ref|ZP_08407253.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624]
 gi|332039209|gb|EGI75627.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624]
          Length = 436

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 60/176 (34%), Gaps = 23/176 (13%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112
           IL GP G+GK+ +A + +D   +   S                +A++    L   R  V 
Sbjct: 51  ILWGPPGTGKTTIARLMADAFGAQFISISAVLGGVKDIREAVELAEAARDGLQQQRTIVF 110

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR   A V  +  
Sbjct: 111 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQA 163

Query: 173 P-DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             +DD  + V+     D    ++      ++   +         ++ +   A  + 
Sbjct: 164 LTEDDLKQIVLRARGIDAVPPLEDAALDRLIAYADGDARRLLNTLETLSVAARQQK 219


>gi|253732284|ref|ZP_04866449.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253724073|gb|EES92802.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
          Length = 415

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 34  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 93

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 94  RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 142

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 143 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 199

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 200 DNDKDGYRHVTLQDAKDCLQK 220


>gi|154491485|ref|ZP_02031111.1| hypothetical protein PARMER_01094 [Parabacteroides merdae ATCC
           43184]
 gi|154088460|gb|EDN87505.1| hypothetical protein PARMER_01094 [Parabacteroides merdae ATCC
           43184]
          Length = 246

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 36/190 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIA---KSLDSILIDTRKPVLLEDIDLL 119
              IL GP G GK+ LA I +   K      S +    K +  +L   RK    +    +
Sbjct: 40  PSFILWGPPGVGKTTLAKIVATTLKRPFYTLSAVTSGVKEVREVLESARKQKFFDSKPPI 99

Query: 120 DF-NDTQLFHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            F ++    H  N           +     L+ A T   S+ V  P L SR     V  +
Sbjct: 100 LFIDEI---HRFNKSQQDSLLGAVEQGVVTLIGATTENPSFEVISP-LLSR---CQVYIL 152

Query: 171 SLPDDDFLEKVIVKMFA------DRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
               D  L+ ++ +  A       R+I +   + L  +       S   A KL++ +D +
Sbjct: 153 QPMTDGELQTLLDRALATDPELKTREIEVQETEALFRF-------SGGDARKLLNILDII 205

Query: 223 ALSRGMGITR 232
             +    +T 
Sbjct: 206 TGAANGKVTI 215


>gi|47076713|dbj|BAD18270.1| transposase B of IS643 [Bacillus firmus]
          Length = 254

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GP G GK+ +A     ++    F     ++  ++                  I + 
Sbjct: 104 LILLGPPGIGKTYIAVGLGLEAVHRGFHVYFVTMGELIQLLKTEEYLNKSKVQLKRIRSS 163

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             V+++D+  +  +  +    FH+IN +++  SS+++T+   P  WG  + D
Sbjct: 164 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPDEWGNLIGD 214


>gi|315174320|gb|EFU18337.1| recombination factor protein RarA [Enterococcus faecalis TX1346]
          Length = 425

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 73/199 (36%), Gaps = 36/199 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q + R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAEVLKE 241
                  IT  +  E ++ 
Sbjct: 210 NEQGEIKITLPIIEECMQR 228


>gi|302829468|ref|XP_002946301.1| hypothetical protein VOLCADRAFT_78972 [Volvox carteri f.
           nagariensis]
 gi|300269116|gb|EFJ53296.1| hypothetical protein VOLCADRAFT_78972 [Volvox carteri f.
           nagariensis]
          Length = 815

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +                   SN+ K       +
Sbjct: 237 PPKGILLYGPPGSGKTLIARAVANETGAFFVVVNGPEIMSKLAGESESNLRKVFQEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +      +++ A   P S    
Sbjct: 297 APSIIFIDEVDSIAPKRDKTQGEVERRIVSQLLTLMDGLKSRAHVIVIAATNRPNSIDAA 356

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+    +V+      + + +D+ +
Sbjct: 357 LR----RFGRFDREIDIGVPDETGRLEVL--RIHTKNMKLDEDV 394



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D    
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARG 568


>gi|21592745|gb|AAM64694.1| cell division protein FtsH-like protein [Arabidopsis thaliana]
          Length = 622

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 37/212 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 368 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSP 427

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        +++ A   P +    L 
Sbjct: 428 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALC 487

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V ++ PD +   K++     D  +  D  L   +V  +    V A  
Sbjct: 488 RPGRFSR-----KVLVAEPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGFVGA-D 541

Query: 215 LVDKMDNLALSRGMGITRSLAAE-VLKETQQC 245
           L + ++  AL        ++A E +++  ++ 
Sbjct: 542 LANIVNEAALLAARRGGEAVAREDIMEAIERA 573


>gi|284048554|ref|YP_003398893.1| IstB domain protein ATP-binding protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952775|gb|ADB47578.1| IstB domain protein ATP-binding protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 284

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 72/197 (36%), Gaps = 43/197 (21%)

Query: 15  KQKNDQPKNKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILV 70
           +++ ++ +   EQ  L   F  C      +  V     +A+  +        P R   L 
Sbjct: 58  QRREERNRQLLEQAGLPEMFLSCT---FSEYQVEPGNRKALETVRKLAREKRPGRGFFLH 114

Query: 71  GPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRK-------------PVLL 113
           GPSG GK+ LA +++     + ++ RF+ +A  L+ +  + +               ++L
Sbjct: 115 GPSGVGKTMLAVLFAKELLAQGKAVRFTTVAGLLNQLRRNIQGDWNQRMDQYQEVPCLIL 174

Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC---------------L 155
           +D+      +    QLF +I++ +      + T+     +                   +
Sbjct: 175 DDLGTEKVTEWGLEQLFLLIDARYTARRQTVFTSNFSLQALQERFHRARNKTGWEERRTI 234

Query: 156 PDLCSRLKAATVVKISL 172
             L SR+     V++  
Sbjct: 235 DRLISRI-GGMTVELEA 250


>gi|227827953|ref|YP_002829733.1| ATPase AAA [Sulfolobus islandicus M.14.25]
 gi|229585220|ref|YP_002843722.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238620179|ref|YP_002915005.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|227459749|gb|ACP38435.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25]
 gi|228020270|gb|ACP55677.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
 gi|238381249|gb|ACR42337.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
 gi|323475040|gb|ADX85646.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
 gi|323477771|gb|ADX83009.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
          Length = 759

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + V+L GP G GK+ LA   +++  +              +    + L  I  +    
Sbjct: 224 PPKGVLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKN 283

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I      +++ A   P +    
Sbjct: 284 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDA---V 340

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    ++++      R + + + +
Sbjct: 341 DPALRRPGRFDREIEIRPPDAKARKEILQVHT--RNMPLAEDV 381



 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 499 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 530


>gi|241948511|ref|XP_002416978.1| DNA-dependent ATPase (MGS1), putative; homolog of human Werner
           helicase interacting protein (WHIP), putative [Candida
           dubliniensis CD36]
 gi|223640316|emb|CAX44566.1| DNA-dependent ATPase (MGS1), putative [Candida dubliniensis CD36]
          Length = 677

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 73/258 (28%), Gaps = 58/258 (22%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL-----VHSAIEQAVRLIDSWPSWPSRV 66
              K K      ++  +  +       S DD       V         +I +        
Sbjct: 149 FLKKAKEINELKRQASIPLAHRLRPK-SLDDFFGQEKLVGK-NGALRNIIQAD---IIPS 203

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
            +L G  G GK+ LA I +  +       +   + AK L  + +        E+   L  
Sbjct: 204 FLLWGVPGIGKTSLARIIAKTTSCKFVELSGIDSNAKRLKEVFVQA------ENHKNLSG 257

Query: 122 NDTQLF----HIINSIHQYDSSLLM-------------TARTFPVSWGVCLPDLCSRLKA 164
             T LF    H  N   Q    LL+             T      +       L SR+  
Sbjct: 258 QRTILFLDEIHRFNKAVQD---LLLPVIEKGTLTVIGATTENPSFNLNNA---LLSRM-- 309

Query: 165 ATVVKISLPD-DDFLEKVIVKMFADRQ----------IFIDKKLAAYIVQRMERSLVFAE 213
                +   + D  ++ +   +F   +          I + K    YI +        A 
Sbjct: 310 -HTFVMEPLNVDSLIKILTRALFEVNRVRKNLYGLHYISLQKDAYHYIAELCMGDSRVAL 368

Query: 214 KLVDKMDNLALSRGMGIT 231
            +++ ++    +     T
Sbjct: 369 NILETINAYLSAEKFKNT 386


>gi|87308267|ref|ZP_01090408.1| chromosomal replication initiator protein DnaA [Blastopirellula
           marina DSM 3645]
 gi|87288824|gb|EAQ80717.1| chromosomal replication initiator protein DnaA [Blastopirellula
           marina DSM 3645]
          Length = 372

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 50/240 (20%)

Query: 43  LLVHSAIE---QAVRLIDSW-PSWPSRVVILVGPSGSGKSCLANIWSDK----------- 87
            L          AV  +D   P W    V+  GP+ +GKS LA     +           
Sbjct: 40  FLGGPENRLVRTAVEALDHPHPPW--NPVVFYGPTATGKSHLAAGLLARWKQSHPDSQVV 97

Query: 88  --SRS---TRFSNIAKSLDSI----LIDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQ 135
             + +      +  A+  + +    +  +   +L++++  L         L   ++ +  
Sbjct: 98  TTTGADFSRTITTAARRGEPVDFMSIWQSVDALLIDNLHELANFPSAQELLVLRLDELIA 157

Query: 136 YDSSLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
            D  +L T    P+     L   L SRL +  +V +  P     + + +      Q+ + 
Sbjct: 158 SDRLVLATCVGNPLE-NFSLSRRLVSRLSSGLLVPVEPPSAATRQALALHFAMQHQVDMT 216

Query: 195 ---------------KKLAAYIVQRMERSLVFAEKL--VDKMDNLALSRGMGITRSLAAE 237
                           +L   +++   R      +L  + ++D  +L+    I+  +   
Sbjct: 217 AAAAKQLAEAFSTNLPELQGMLLELFAREFGSTPQLGKMRRID--SLAARRFISVKVTGR 274


>gi|68468917|ref|XP_721517.1| hypothetical protein CaO19.3019 [Candida albicans SC5314]
 gi|68469463|ref|XP_721246.1| hypothetical protein CaO19.10537 [Candida albicans SC5314]
 gi|46443155|gb|EAL02439.1| hypothetical protein CaO19.10537 [Candida albicans SC5314]
 gi|46443437|gb|EAL02719.1| hypothetical protein CaO19.3019 [Candida albicans SC5314]
          Length = 678

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 73/256 (28%), Gaps = 58/256 (22%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLG-ISRDDLL-----VHSAIEQAVRLIDSWPSWPSRVVIL 69
           QK  + K  + Q        L   S DD       V         +I +         +L
Sbjct: 150 QKAKEIKELKRQASIPLAHRLRPKSLDDFFGQEKLVGE-NGALRNIIQAD---IIPSFLL 205

Query: 70  VGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            G  G GK+ LA I +  +       +   + AK L  + +        E+   L    T
Sbjct: 206 WGVPGIGKTSLARIIAKTTSCKFVELSGIDSNAKRLKEVFVQA------ENHKNLSGQRT 259

Query: 125 QLF----HIINSIHQYDSSLLM-------------TARTFPVSWGVCLPDLCSRLKAATV 167
            LF    H  N   Q    LL+             T      +       L SR+     
Sbjct: 260 ILFLDEIHRFNKAVQD---LLLPVIEKGTLTVIGATTENPSFNLNNA---LLSRM---HT 310

Query: 168 VKISLPD-DDFLEKVIVKMFADRQ----------IFIDKKLAAYIVQRMERSLVFAEKLV 216
             +     D  ++ +   +F   +          I + K    YI +        A  ++
Sbjct: 311 FVMEPLTVDSLIKILTRALFEVNRVRKNLYGLHYISLQKDAYHYIAELCMGDSRVALNIL 370

Query: 217 DKMDNLALSRGMGITR 232
           + ++    +     T 
Sbjct: 371 ETINAYLSADKFKSTV 386


>gi|303249802|ref|ZP_07336006.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651369|gb|EFL81521.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 446

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 52  MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 161

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  + +V+     D  R +     +I+  +   +   +     FA   ++ M ++A
Sbjct: 162 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 221

Query: 224 LS--RGMGITRSLAAEVLKETQQ 244
               +G  + ++L AEVL E Q 
Sbjct: 222 EISPQGKHLNKALLAEVLGERQA 244


>gi|293603854|ref|ZP_06686269.1| ISPsy20 transposase [Achromobacter piechaudii ATCC 43553]
 gi|292817691|gb|EFF76757.1| ISPsy20 transposase [Achromobacter piechaudii ATCC 43553]
          Length = 263

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 24/143 (16%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88
           FP    +   D       E  VR +       P+  V+LVG  G+GK+ LA  ++  +  
Sbjct: 65  FPAYRDLQGFDFGCSEVNEALVRQLHRGEFIEPAHNVVLVGGPGTGKTHLATAFAVHAIE 124

Query: 89  ---RSTRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFNDTQ---LFH 128
              R  RF +  + ++++ ++ +                V+L+++  L F+      LFH
Sbjct: 125 HLRRRVRFFSTIELVNTLELEKQAGKAGHLANRLMHSHVVILDELGYLPFSQAGGALLFH 184

Query: 129 IINSIHQYDSSLLMTARTFPVSW 151
           +I+ ++++ +SL++T       W
Sbjct: 185 LISKLYEH-TSLIITTNLSFAEW 206


>gi|330038670|ref|XP_003239665.1| 26S protease regulatory SU 6A [Cryptomonas paramecium]
 gi|327206589|gb|AEA38767.1| 26S protease regulatory SU 6A [Cryptomonas paramecium]
          Length = 395

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ LA   + ++ +T     A  L  + I     ++ E
Sbjct: 175 PPKGVLLYGPPGLGKTLLARACAAQTDATFLKIAASQLVQMYIGEGASLVRE 226


>gi|297661889|ref|XP_002809450.1| PREDICTED: nuclear valosin-containing protein-like, partial [Pongo
           abelii]
          Length = 728

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 41/168 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 356

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 357 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 416

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
               P L    +A      + + +PD+   E++  K  A++ + + + 
Sbjct: 417 D---PALR---RAGRFDREICLGIPDEASRERINFKHCAEK-LRLPQA 457


>gi|169824318|ref|YP_001691929.1| ATPase [Finegoldia magna ATCC 29328]
 gi|167831123|dbj|BAG08039.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Finegoldia magna ATCC 29328]
          Length = 431

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 31/181 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +I  GP G+GK+ LA I S+++ S        SN  K +  ++   +  + + +   +
Sbjct: 53  PSMIFYGPPGTGKTTLAEIISNQTNSLFERLSAISNGVKDIREVISTAKTNLSMYNKKTV 112

Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            F ++    H  N           +  +  L+ A T    + V    L SR     ++++
Sbjct: 113 LFIDEI---HRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKA-LLSR---CQIIEL 165

Query: 171 SLPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRME---RS-LVFAEKLVDKMD 220
               D+ +  +I       K   +  I ID+K    +V       RS L   E  V+  D
Sbjct: 166 KPLTDNDIRNIIENALTEDKKLKEMNIQIDEKAIDVLVNSANGDARSALNALEIAVESTD 225

Query: 221 N 221
            
Sbjct: 226 Q 226


>gi|27544694|dbj|BAC55042.1| DnaA [Mycobacterium chelonae]
          Length = 175

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 31  SFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
                   + +  ++ ++      A   +   P+     + + G SG GK+ L + 
Sbjct: 102 DTSLNARYTFESFVIGASNRFSHAAAVAVSEAPARAYNPLFIWGESGLGKTHLLHA 157


>gi|47076486|dbj|BAD18149.1| transposase B of IS643 [Bacillus halodurans]
          Length = 255

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GP G GK+ +A     ++    F     ++  ++                  I   
Sbjct: 105 LILLGPPGIGKTYIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 164

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             V+++D+  +  +  +    FH+IN +++  SS+++T+   P  WG  + D
Sbjct: 165 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 215


>gi|68064516|ref|XP_674242.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56492674|emb|CAH95634.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 512

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 27/177 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112
           +IL GP GSGKS L N+  +K+ +   +    +              ++  L   R  + 
Sbjct: 195 LILCGPPGSGKSSLINVIKNKTHNLFITLFHLNNFNTEIRRIYDQSIINYKLSKRRMILC 254

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++DI+ L+    +  H++  + +     LL T    P    +    L SR      + +S
Sbjct: 255 IKDINRLNKPQQE--HLL-LVLKKGYFYLLATCLYNP--MNILNASLSSR---CLYLYLS 306

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
             D   L  +I ++     I I+      I+     S   A   ++ +D  A+    
Sbjct: 307 PYDKIELALIIKRIINKLNIEIEDNALNVIISH---SSGDARVAINIID-FAIQHMR 359


>gi|70944893|ref|XP_742328.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521244|emb|CAH79373.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 438

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 27/177 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112
           +IL GP GSGKS L N+  +K+ +   +    +              ++  L   R  + 
Sbjct: 38  LILCGPPGSGKSSLINVIKNKTHNLFITLFHLNNFNTEIRRIYDQSIINYKLSKRRMILC 97

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++DI+ L+    +  H++  + +     LL T    P    +    L SR      + +S
Sbjct: 98  IKDINRLNKPQQE--HLL-LVLKKGYFYLLATCLYNP--MNILNASLSSR---CLYLYLS 149

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
             D   L  +I ++     I I+      I+     S   A   ++ +D  A+    
Sbjct: 150 PYDKIELALIIKRIINKLNIEIEDNALNVIISH---SSGDARVAINIID-FAIQHMR 202


>gi|82595672|ref|XP_725945.1| helicase  [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481145|gb|EAA17510.1| putative helicase RUVBL [Plasmodium yoelii yoelii]
          Length = 595

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 27/177 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112
           +IL GP GSGKS L N+  +K+ +   +    +              ++  L   R  + 
Sbjct: 195 LILCGPPGSGKSSLINVIKNKTHNLFITLFHLNNFNTEIRRIYDQSIINYKLSKRRMILC 254

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++DI+ L+    +  H++  + +     LL T    P    +    L SR      + +S
Sbjct: 255 IKDINRLNKPQQE--HLL-LVLKKGYFYLLATCLYNP--MNILNASLSSR---CLYLYLS 306

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
             D   L  +I ++     I I+      I+     S   A   ++ +D  A+    
Sbjct: 307 PYDKIELALIIKRIINKLNIEIEDNALNVIISH---SSGDARVAINIID-FAIQHMR 359


>gi|81428450|ref|YP_395450.1| recombination factor protein RarA [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610092|emb|CAI55141.1| Putative DNA-replication helicase [Lactobacillus sakei subsp. sakei
           23K]
          Length = 426

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 27/169 (15%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   +      +    S   + I   +        +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTQYAFRMLNAATDSKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++   ++
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIVLIGATTENPYITIN-PAIRSR---TQIFEVHPLNE 152

Query: 176 DFLEKVIVKMFADRQIFIDKKLAA-------YIVQRMERSLVFAEKLVD 217
             +   I +   D Q  +  +          Y+ Q     L  A   ++
Sbjct: 153 ADIHVAIQRALTDPQKGLGDEPVNLDETAEKYLAQVTNGDLRSALNALE 201


>gi|307249662|ref|ZP_07531648.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858360|gb|EFM90430.1| Replication-associated recombination protein A [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 446

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 52  MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 161

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  + +V+     D  R +     +I+  +   +   +     FA   ++ M ++A
Sbjct: 162 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 221

Query: 224 LS--RGMGITRSLAAEVLKETQQ 244
               +G  + ++L AEVL E Q 
Sbjct: 222 EISPQGKHLNKALLAEVLGERQA 244


>gi|302038840|ref|YP_003799162.1| replication-associated recombination protein A [Candidatus
           Nitrospira defluvii]
 gi|300606904|emb|CBK43237.1| Replication-associated recombination protein A [Candidatus
           Nitrospira defluvii]
          Length = 429

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 30/189 (15%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLL-----VHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
            Q   +  ++  +       S DDL+     V          I+         VI  GP 
Sbjct: 14  AQTATRPGKVPLAERMRPR-SFDDLVGQDEVVGPG-RPLRNAIERDQ---LSSVIFWGPP 68

Query: 74  GSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDFNDTQLFH 128
           G GK+ LA + +  + S      A +     L  I+        +     L  ++    H
Sbjct: 69  GCGKTTLAGLVAQHTESQFVPFSAVTGGIPELREIIKAAEHRRAMGRATTLFVDEI---H 125

Query: 129 IINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
             N           +  + +L+ A T   S+ +  P L SR   + VV +    ++ L  
Sbjct: 126 RFNKAQQDAFLPHVERGTVVLIGATTENPSFELIAP-LLSR---SIVVLLKPLSEESLGS 181

Query: 181 VIVKMFADR 189
           ++ +   DR
Sbjct: 182 ILDRAVDDR 190


>gi|291087419|ref|ZP_06571936.1| replication-associated recombination protein A [Clostridium sp.
           M62/1]
 gi|291075102|gb|EFE12466.1| replication-associated recombination protein A [Clostridium sp.
           M62/1]
          Length = 484

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 26/171 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKP--------VLL 113
           +I  GP G GK+ LA I ++++ +   +  A +     +  ++    +         V +
Sbjct: 75  MIFWGPPGVGKTTLAGIIANRTNAGFINFSAVTSGIKEIREVMAKAEEARHRGMKTVVFV 134

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ +    L SR     V  +   
Sbjct: 135 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEINSA-LLSR---CRVFVLKEL 187

Query: 174 DDDFLEKVIVKMF-ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDK 218
             + L  ++     + R      + I+++L   I +        A  +++ 
Sbjct: 188 SREELTALLKHALTSSRGYGYLKVEIEEELLDMIARFAGGDARTALNVLEM 238


>gi|298694907|gb|ADI98129.1| probable ATPase [Staphylococcus aureus subsp. aureus ED133]
 gi|323440819|gb|EGA98528.1| recombination factor protein RarA [Staphylococcus aureus O11]
 gi|323442832|gb|EGB00457.1| recombination factor protein RarA [Staphylococcus aureus O46]
          Length = 415

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 34  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 93

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 94  RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 142

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 143 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 199

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 200 DNDKDGYRHVTLQDAKDCLQK 220


>gi|258448784|ref|ZP_05696896.1| recombination protein MgsA [Staphylococcus aureus A6224]
 gi|257858062|gb|EEV80951.1| recombination protein MgsA [Staphylococcus aureus A6224]
          Length = 424

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 NDEDVRQALTRAIEDDENGLKTYQSKIDEDAMTYFSTQ---SQGDVRNALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229


>gi|223937388|ref|ZP_03629293.1| AAA ATPase central domain protein [bacterium Ellin514]
 gi|223893939|gb|EEF60395.1| AAA ATPase central domain protein [bacterium Ellin514]
          Length = 457

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 33/181 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFND 123
           +I  GP G+GK+ LA I + ++ S   R S +     D   + +     LE+        
Sbjct: 68  LIFYGPPGTGKTSLAQIIALQTSSKFERLSGVESNVADMRRVLSAASNRLEN----TGQP 123

Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N           +     L+ A T    + V  P L SR   + + ++ 
Sbjct: 124 TILFVDEIHRFNKSQQDVLLPDVESGVIRLIGATTHNPFFFVNSP-LVSR---SQIFELR 179

Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              ++ L +++ +   D  R +      +D+    ++ +    S   A K ++ ++  AL
Sbjct: 180 PLTEEELYQLLQRSLQDPERGLGYMKIHVDEAALRHLAK---LSDGDARKALNSLEIAAL 236

Query: 225 S 225
           +
Sbjct: 237 T 237


>gi|227830675|ref|YP_002832455.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|229579582|ref|YP_002837981.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|284998202|ref|YP_003419969.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
 gi|227457123|gb|ACP35810.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
 gi|228010297|gb|ACP46059.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
           Y.G.57.14]
 gi|284446097|gb|ADB87599.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
          Length = 759

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + V+L GP G GK+ LA   +++  +              +    + L  I  +    
Sbjct: 224 PPKGVLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKN 283

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I      +++ A   P +    
Sbjct: 284 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDA---V 340

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    ++++      R + + + +
Sbjct: 341 DPALRRPGRFDREIEIRPPDAKARKEILQVHT--RNMPLAEDV 381



 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 499 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 530


>gi|87126144|gb|ABD20658.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
          Length = 391

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 10  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 69

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 70  RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 118

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 119 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 175

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 176 DNDKDGYRHVTLQDAKDCLQK 196


>gi|319400954|gb|EFV89173.1| ATPase family associated with various cellular activities (AAA)
           family protein [Staphylococcus epidermidis FRI909]
          Length = 423

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           + D +   + +   D  R +      +D+    Y   +   S       ++ ++   LS 
Sbjct: 152 NQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    IT   A + L++
Sbjct: 209 HIDEQNERHITLDDAKDCLQK 229


>gi|150866631|ref|XP_001386295.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149387887|gb|ABN68266.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 788

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 42/159 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P R ++L GP G+GK+ L    + ++ +   +                ++  I I+ RK 
Sbjct: 286 PPRGILLHGPPGTGKTMLLRCVASETNAHILTINGPSIVSKYLGETENAIRDIFIEARKY 345

Query: 111 ----VLLEDIDLL----DFND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID L    + +D           L  +++ +      +++ A   P S   
Sbjct: 346 QPSIIFMDEIDSLVPSRNSDDSGETESRVVATLLTMMDGMGDSGRIVVVAATNRPNSIDA 405

Query: 154 CLP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
            L      D          V+I +PD D    +++K FA
Sbjct: 406 ALRRPGRFD--------QEVEIGIPDVDARTDILLKQFA 436


>gi|126465619|ref|YP_001040728.1| AAA family ATPase, CDC48 subfamily protein [Staphylothermus marinus
           F1]
 gi|126014442|gb|ABN69820.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1]
          Length = 738

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 42/216 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P R ++L GP G+GK+ LA   + +S +   +                 I +      + 
Sbjct: 496 PPRGILLYGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARLY 555

Query: 107 TRKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               +  ++ID +                 +QL   ++ I++ D+ +++ A   P     
Sbjct: 556 APAVIFFDEIDAIAPARGYAFDSRVTERIVSQLLTEMDGINRLDNVVVIAATNRPDILDP 615

Query: 154 CLPDLCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER--S 208
            L      L+      ++ +  PD     ++ +     R + +   +  Y + R+    S
Sbjct: 616 AL------LRPGRFDKLIYVPPPD--LNGRIEILKIHTRNMPLADDVDLYEIARLTEGYS 667

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
               E LV +    AL   + I +      L+   +
Sbjct: 668 GADLEALVREAAMRALKENIEINKVYMRHFLEAMNE 703



 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 76/218 (34%), Gaps = 45/218 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + ++L GP G+GK+ LA   ++++ +   +               + L  I    +  
Sbjct: 223 PPKGILLYGPPGTGKTLLAKAVANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKN 282

Query: 109 --KPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 283 APAIIFIDEIDAIAPKRDEVMGEVERRVVAQLLALMDGLESRGDVIVIAATNRPNALD-- 340

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L    +    +++ LPD     +++      R + +   +    +  +      A  
Sbjct: 341 -PALRRPGRFDREIEVPLPDKQGRLEILQ--IHTRGMPLANDVDLNKLAEITHGYTGA-D 396

Query: 215 LVDKMDNLALSRGMGI---------TRSLAAEVLKETQ 243
           +   +   AL               T  +  EVL++ +
Sbjct: 397 IAALVKEAALHALRRYMPEIDLESETIPV--EVLEKME 432


>gi|73920780|sp|Q07590|SAV_SULAC RecName: Full=Protein SAV
          Length = 780

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + ++L GP G+GK+ LA   +++  +   +               + +  I  +  + 
Sbjct: 245 PPKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEEN 304

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I      +++ A   P +    
Sbjct: 305 APSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLTLMDGIKGRGRVIVIGATNRPDAID-- 362

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    + ++      R + I   +
Sbjct: 363 -PALRRPGRFDREIEIRPPDTKGRKDILQVH--TRNMPITDDV 402



 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 520 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 551


>gi|304321467|ref|YP_003855110.1| hypothetical protein PB2503_09579 [Parvularcula bermudensis
           HTCC2503]
 gi|303300369|gb|ADM09968.1| hypothetical protein PB2503_09579 [Parvularcula bermudensis
           HTCC2503]
          Length = 402

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 22/144 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFN 122
             +IL GP G GK+ LA + +        S  A       +      + E  +       
Sbjct: 18  PSLILWGPPGVGKTTLARLLAGAVDLEFVSISAIFSGVADLRK----VFEAAEGRRQTGQ 73

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  +  L+ A T   S+ +    L SR   A VV +
Sbjct: 74  GTLLFVDEIHRFNRAQQDSFLPVMEKGTITLVGATTENPSFALNAA-LLSR---AQVVTL 129

Query: 171 SLPDDDFLEKVIVKMFADRQIFID 194
              D+  LE+++ +   D    + 
Sbjct: 130 HRLDEAALEQLLQRAEKDIGAPLP 153


>gi|198283628|ref|YP_002219949.1| IstB domain-containing protein ATP-binding protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198284129|ref|YP_002220450.1| IstB domain-containing protein ATP-binding protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198284483|ref|YP_002220804.1| IstB domain-containing protein ATP-binding protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198284852|ref|YP_002221173.1| IstB domain-containing protein ATP-binding protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667625|ref|YP_002427536.1| ISAfe9, transposition helper protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248149|gb|ACH83742.1| IstB domain protein ATP-binding protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198248650|gb|ACH84243.1| IstB domain protein ATP-binding protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198249004|gb|ACH84597.1| IstB domain protein ATP-binding protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198249373|gb|ACH84966.1| IstB domain protein ATP-binding protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519838|gb|ACK80424.1| ISAfe9, transposition helper protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 275

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 29/152 (19%)

Query: 31  SFPRCLGISRDDLLVHSAIE----QAVRLIDSW-PSWPSRVVILVGPSGSGKSCL----A 81
           + P    +   D  V   +     QA+   D W     +  ++L GP G GKS L     
Sbjct: 67  NLPPDKRLGNYDFTVVPTLSKAHVQALAEADGWIQEGAN--LLLFGPPGVGKSHLVAAVG 124

Query: 82  NIWSDKSRSTRFSNIA--------------KSLDSILIDTRKPVLLEDIDLLDFNDTQ-- 125
           +   ++     F+  +                     +D    ++L+D   +  +  +  
Sbjct: 125 HALVERGCRVYFTRTSDLVQQLQSARKELRLPATLAKLDRFDLLILDDFSYVRRDQAETS 184

Query: 126 -LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
            LF +I S      SL +TA     +W    P
Sbjct: 185 VLFELI-SERYERKSLAITANQPFSAWDQVFP 215


>gi|302874956|ref|YP_003843589.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans
           743B]
 gi|307690426|ref|ZP_07632872.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans
           743B]
 gi|302577813|gb|ADL51825.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans
           743B]
          Length = 342

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 29/194 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA I +++   T       +++           L+D D+L  +
Sbjct: 52  PLDHVLLYGPPGLGKTTLATIIANEMGGTLKITSGPAIERAGDLAAILTGLKDNDVLFID 111

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK-- 180
           +    H +N   +    +L      P      L  +  +  +A  ++I LP    +    
Sbjct: 112 EI---HRMNRAVEE---ILY-----PAMEDYALDIVIGKGASAKSIRIDLPKFTLIGATT 160

Query: 181 ---VIVKMFADRQIFIDKKLAAY-----IVQRMERSLVFAEKLVDKMDNLA---LSRGMG 229
              ++     DR   +      Y     + + + RS      L   +D  A   L++   
Sbjct: 161 RIGLLTAPLRDRFGVMCP--MEYYDESDLKEIISRS-SSILDL--PIDEEAAMELAKRSR 215

Query: 230 ITRSLAAEVLKETQ 243
            T  +A  +LK  +
Sbjct: 216 GTPRIANRLLKRVR 229


>gi|52841991|ref|YP_095790.1| recombination factor protein RarA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|148359308|ref|YP_001250515.1| chromosome architecture ATPase [Legionella pneumophila str. Corby]
 gi|296107355|ref|YP_003619055.1| ATPase associated with chromosome architecture [Legionella
           pneumophila 2300/99 Alcoy]
 gi|52629102|gb|AAU27843.1| ATPase associated with chromosome architecture [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148281081|gb|ABQ55169.1| ATPase associated with chromosome architecture [Legionella
           pneumophila str. Corby]
 gi|295649256|gb|ADG25103.1| ATPase associated with chromosome architecture [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610463|emb|CBX00034.1| hypothetical protein LPW_17901 [Legionella pneumophila 130b]
          Length = 434

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 66/181 (36%), Gaps = 26/181 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ +A + +        +  A     K + + +   ++ ++ +   +L  
Sbjct: 49  MILWGPPGVGKTTIARLTAQAFDCEWIALSAVFSGVKDIRAAVEKAQEYLIHDKQTILFI 108

Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++    H  N   Q   +LL          + A T   S+ V    L SR   A V  + 
Sbjct: 109 DEI---HRFNKAQQD--ALLPYTESGLITFIGATTENPSFEVNSA-LLSR---AQVYVLK 159

Query: 172 LPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
              +  L+ + ++        +   ++   +++   +        L+++     L+    
Sbjct: 160 PLSEQELKLLFLRAHQRALSSLQFTEEAVDFLISCADGDARRLLNLLEQTKTACLTIKTA 219

Query: 230 I 230
           +
Sbjct: 220 V 220


>gi|297620228|ref|YP_003708333.1| AAA ATPase central domain-containing protein [Methanococcus voltae
           A3]
 gi|297379205|gb|ADI37360.1| AAA ATPase central domain protein [Methanococcus voltae A3]
          Length = 510

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 23/170 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPV 111
           ++L GP G GK+ LA   ++          A                ++   L   R  +
Sbjct: 42  LLLAGPPGCGKTTLAYALANDYNFEVIELNASDKRNKNVIQQVVGTAAVSKSLSGRRSLI 101

Query: 112 LLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           +L+++D L  ND    +  II       + +++TA      + + L  L     +  +V 
Sbjct: 102 ILDEVDGLSGNDDRGGVSEIIKVAKTAKNPIILTANDP---YKLNLSTLR---NSVHLVN 155

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +S    + +  V+ K+       +D K    I       L  A   ++ +
Sbjct: 156 VSSVHTNSIPPVLRKIALQEGYEVDPKAIKMIASHASGDLRAAINDLESL 205


>gi|323466477|gb|ADX70164.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus helveticus H10]
          Length = 424

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 15/126 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVL--LEDIDL 118
           +IL GP G+GKS LA I + +        +    N  K    I     +P +  +++I  
Sbjct: 48  LILWGPPGTGKSSLAQIIAKQFDYPLAKFNASIDNKGKLDQFIKTYPYQPFVLLIDEIHR 107

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
           +  N            +    LL+ A T      +  P + SR     + +    +D  +
Sbjct: 108 MTKNLQDFLLPY---LENGHILLVGATTENPIMSIV-PAIRSR---CQIFEFKALNDQNI 160

Query: 179 EKVIVK 184
           E V+ +
Sbjct: 161 EIVLKR 166


>gi|294848657|ref|ZP_06789403.1| ATPase [Staphylococcus aureus A9754]
 gi|294824683|gb|EFG41106.1| ATPase [Staphylococcus aureus A9754]
          Length = 427

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 46  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 105

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 106 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 154

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 155 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 211

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 212 DNDKDGYRHVTLQDAKDCLQK 232


>gi|228939746|ref|ZP_04102327.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972609|ref|ZP_04133213.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228982250|ref|ZP_04142532.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis Bt407]
 gi|228777479|gb|EEM25764.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis Bt407]
 gi|228787150|gb|EEM35125.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228819978|gb|EEM66022.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 164

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 24/121 (19%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----------- 104
           + ++  W    ++L G  G+GK+ LA    ++     +  + +S+  +L           
Sbjct: 4   VKTFKEWDGESLMLWGDPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRRTFNSEN 63

Query: 105 ----------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
                     +     ++L+DI      ++ + +LF+II+  ++ +   L T+   P   
Sbjct: 64  KENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLEPKEL 123

Query: 152 G 152
            
Sbjct: 124 K 124


>gi|87202996|gb|ABD30806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|320140486|gb|EFW32340.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144025|gb|EFW35794.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 415

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 34  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 93

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 94  RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 142

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 143 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 199

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 200 DNDKDGYRHVTLQDAKDCLQK 220


>gi|15924617|ref|NP_372151.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927207|ref|NP_374740.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus N315]
 gi|156979945|ref|YP_001442204.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|255006413|ref|ZP_05145014.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258438200|ref|ZP_05689484.1| recombination factor protein RarA [Staphylococcus aureus A9299]
 gi|258443663|ref|ZP_05692002.1| recombination factor protein RarA [Staphylococcus aureus A8115]
 gi|269203253|ref|YP_003282522.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893130|ref|ZP_06301364.1| ATPase [Staphylococcus aureus A8117]
 gi|296275913|ref|ZP_06858420.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|13701425|dbj|BAB42719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247398|dbj|BAB57789.1| similar to ATPase, AAA family [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722080|dbj|BAF78497.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257848244|gb|EEV72235.1| recombination factor protein RarA [Staphylococcus aureus A9299]
 gi|257851069|gb|EEV75012.1| recombination factor protein RarA [Staphylococcus aureus A8115]
 gi|262075543|gb|ACY11516.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282764448|gb|EFC04574.1| ATPase [Staphylococcus aureus A8117]
          Length = 424

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229


>gi|134295004|ref|YP_001118739.1| recombination factor protein RarA [Burkholderia vietnamiensis G4]
 gi|134138161|gb|ABO53904.1| Recombination protein MgsA [Burkholderia vietnamiensis G4]
          Length = 436

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQAKDTLNRTGRH-TIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +   D
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLD 164

Query: 175 DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           DD + +++ +    A   +  D K    ++   +     A + ++ ++  
Sbjct: 165 DDEMRQLLERAQQIALDGLAFDDKAVDTLIGYAD---GDARRFLNLLEQA 211


>gi|148695575|gb|EDL27522.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform
           CRA_c [Mus musculus]
          Length = 451

 Score = 46.3 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395

Query: 211 FAE 213
            A+
Sbjct: 396 GAQ 398


>gi|327540333|gb|EGF26919.1| replication-associated recombination protein A [Rhodopirellula
           baltica WH47]
          Length = 439

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 24/172 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++L GP G+GK+ LA++ + +  S   +  A S     +        + +   D    
Sbjct: 53  GSILLHGPPGTGKTTLAHLIASEQNSELITLNAISSGVKDVREVLAKARDRVSAGD-PRP 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +     L+ A T    + V    L SR   + +  +  
Sbjct: 112 LLFIDEIHRFNKSQQDALLADVESGIISLIGATTSNPYFAVNAA-LISR---SQLFGLEP 167

Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVD 217
              + +  ++ +   DR        + ID+    Y+    +     A   ++
Sbjct: 168 VSVEDMRSLLKRAITDRECGLGNQNVTIDEDAIDYLSSASDGDARKALTALE 219


>gi|190347891|gb|EDK40247.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 426

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++          
Sbjct: 205 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 264

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A     + 
Sbjct: 265 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 324

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L  L S RL     ++  LP ++  E V+      R++  D     +  + + RS
Sbjct: 325 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLNCDNDSVNW--RELARS 374


>gi|119719184|ref|YP_919679.1| replication factor C large subunit [Thermofilum pendens Hrk 5]
 gi|150415669|sp|A1RWU6|RFCL_THEPD RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|119524304|gb|ABL77676.1| replication factor C large subunit [Thermofilum pendens Hrk 5]
          Length = 413

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 36/212 (16%)

Query: 48  AIEQA----VRLIDSWPSW-PSRVV-ILVGPSGSGKSCLANIWSD--------------K 87
             E+A    V  I+SW    PS+   +L GP GSGK+ + +  +               +
Sbjct: 25  GNEEAKKKYVAWINSWVKGKPSKKAALLYGPPGSGKTSIVHATAKEFSWELIELNASDVR 84

Query: 88  SRSTRFSNIAKSLD--SILIDTRKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMT 143
           +R      +  +L+  S+L  + K +LL+++D +   +    L  I+  I + +  +++T
Sbjct: 85  TREALQQRLLGALNTRSVLGYSGKIILLDEVDGISTKEDAGGLQAIVELIEKSNWPIVLT 144

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           A      W   L  L        +++        + KV+  + +   +   +++ + I  
Sbjct: 145 ANDP---WDPKLRPLR---DLCELIEFKKIGKRDIMKVLENICSKEGVECSREVLSAIAD 198

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
             +  L  A       D  +L+ G   T SLA
Sbjct: 199 NAKGDLRAAIN-----DLQSLAMGKK-TISLA 224


>gi|323575416|dbj|BAJ78236.1| replication initiation protein [Spiroplasma sp. Ozg]
          Length = 158

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 111 VLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +L++DI  L      +   FHI NS       +++T+   P           SR ++   
Sbjct: 57  LLVDDIQFLANRSKTNEIFFHIFNSFVNKQKQIVITSDKHPDDLYGFEERNVSRFQSGLS 116

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           V I  PD +    +I+     + +  D  +
Sbjct: 117 VGIDSPDFE--TSLIILKEKIKSLNYDPSI 144


>gi|295428203|ref|ZP_06820835.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128561|gb|EFG58195.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 427

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 46  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 105

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 106 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 154

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 155 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 211

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 212 DNDKDGYRHVTLQDAKDCLQK 232


>gi|283765965|gb|ADB28381.1| DNA replication protein DnaC [Bacillus phage 250]
          Length = 267

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 24/126 (19%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104
            A++ + ++  W    +++ G  G+GK+ LA    ++     +  + +S+  +L      
Sbjct: 102 IAMKYVKTFKEWNGESLMIWGDPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRST 161

Query: 105 ---------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTART 146
                          +     ++L+DI      ++ + +LF+II+  ++ +   L T+  
Sbjct: 162 FNSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNL 221

Query: 147 FPVSWG 152
            P    
Sbjct: 222 QPKELQ 227


>gi|262038640|ref|ZP_06012008.1| replication-associated recombination protein A [Leptotrichia
           goodfellowii F0264]
 gi|261747346|gb|EEY34817.1| replication-associated recombination protein A [Leptotrichia
           goodfellowii F0264]
          Length = 408

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 29/189 (15%)

Query: 68  ILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           I  G  G+GK+ LA I +++        + I  S+  I   + +   +  I+      T 
Sbjct: 52  IFWGSPGTGKTTLAEIIANRMNYNYEYLNAIKSSVSDIKELSERAKRIFGIE---GRQTL 108

Query: 126 LF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N +         +  + +L+  T      S       L SR       +  
Sbjct: 109 LFFDEIHRFNKLQQDSLLQDLENGNIILIGATTENPYYSLNNA---LLSR---CMAFEFK 162

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
             + + L K++  +    +    +++  YI + +E     A  +++ + N     G+  T
Sbjct: 163 KLNKEDLFKILKNINDKEKFDFSEEILEYISEIIEGDARQAINVLELLSN----TGVNFT 218

Query: 232 RSLAAEVLK 240
                EVL 
Sbjct: 219 LEEVKEVLN 227


>gi|284173309|ref|ZP_06387278.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
 gi|261602026|gb|ACX91629.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2]
          Length = 759

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + V+L GP G GK+ LA   +++  +              +    + L  I  +    
Sbjct: 224 PPKGVLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKN 283

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I      +++ A   P +    
Sbjct: 284 SPAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDA---V 340

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    ++++      R + + + +
Sbjct: 341 DPALRRPGRFDREIEIRPPDAKARKEILQVH--TRNMPLAEDV 381



 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 499 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 530


>gi|229142658|ref|ZP_04271134.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus
           BDRD-ST26]
 gi|228640795|gb|EEK97150.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus
           BDRD-ST26]
          Length = 235

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 24/126 (19%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104
            A++ + ++  W    +++ G  G+GK+ LA    ++     +  + +S+  +L      
Sbjct: 70  IAMKYVKTFKEWNGESLMIWGDPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRST 129

Query: 105 ---------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTART 146
                          +     ++L+DI      ++ + +LF+II+  ++ +   L T+  
Sbjct: 130 FNSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNL 189

Query: 147 FPVSWG 152
            P    
Sbjct: 190 QPKELQ 195


>gi|223983856|ref|ZP_03634020.1| hypothetical protein HOLDEFILI_01301 [Holdemania filiformis DSM
           12042]
 gi|223964180|gb|EEF68528.1| hypothetical protein HOLDEFILI_01301 [Holdemania filiformis DSM
           12042]
          Length = 420

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 67/167 (40%), Gaps = 25/167 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +I  GP G+GK+ LA++ +++           +   K LD+I  +        ++++++ 
Sbjct: 42  MIFYGPPGTGKTTLASVLANELHLPYRLFNAVTGNKKELDTIFEEAKFYDGLVLIIDEVH 101

Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L+ +   L   H+ N        +L+ A T   +  +  P + SR     +  I   + 
Sbjct: 102 RLNKDKQDLLLPHVEN-----GRIILIGATTSNPTMAIN-PAIRSR---CHLFAIKPLET 152

Query: 176 DFLEKVIVKMFADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVD 217
             +   + +  A       Q+ +D K A  I       + +A  +++
Sbjct: 153 ADIIAALNRAAASEKGLNGQVQLDPKAAELIASYCGGDIRYALNVLE 199


>gi|197261519|ref|YP_002154334.1| DNA replication protein DnaC [Bacillus phage IEBH]
 gi|197092391|gb|ACH42266.1| DNA replication protein DnaC [Bacillus phage IEBH]
          Length = 263

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 24/126 (19%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104
            A++ + ++  W    +++ G  G+GK+ LA    ++     +  + +S+  +L      
Sbjct: 98  IAMKYVKTFKEWNGESLMIWGDPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRST 157

Query: 105 ---------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTART 146
                          +     ++L+DI      ++ + +LF+II+  ++ +   L T+  
Sbjct: 158 FNSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNL 217

Query: 147 FPVSWG 152
            P    
Sbjct: 218 QPKELQ 223


>gi|70606628|ref|YP_255498.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
 gi|68567276|gb|AAY80205.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
          Length = 747

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + ++L GP G+GK+ LA   +++  +   +               + +  I  +  + 
Sbjct: 212 PPKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEEN 271

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I      +++ A   P +    
Sbjct: 272 APSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLTLMDGIKGRGRVIVIGATNRPDAID-- 329

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    + ++      R + I   +
Sbjct: 330 -PALRRPGRFDREIEIRPPDTKGRKDILQVH--TRNMPITDDV 369



 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 487 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 518


>gi|158257224|dbj|BAF84585.1| unnamed protein product [Homo sapiens]
          Length = 423

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +         ++N +   Q ++ + ++ A       
Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTTLELLNQLDGFQPNTQVKVIAATNRVDIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397


>gi|15897351|ref|NP_341956.1| AAA ATPase family protein [Sulfolobus solfataricus P2]
 gi|13813572|gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus P2]
          Length = 769

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + V+L GP G GK+ LA   +++  +              +    + L  I  +    
Sbjct: 234 PPKGVLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKN 293

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I      +++ A   P +    
Sbjct: 294 SPAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDA---V 350

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    ++++      R + + + +
Sbjct: 351 DPALRRPGRFDREIEIRPPDAKARKEILQVH--TRNMPLAEDV 391



 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 509 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 540


>gi|328788555|ref|XP_393080.4| PREDICTED: spastin [Apis mellifera]
          Length = 712

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 55/165 (33%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+R ++L GP G+GK+ LA   + +  +T FS  A SL S  +   + ++          
Sbjct: 470 PARGLLLFGPPGNGKTLLARAVATQCNATFFSISAASLTSKYVGEGEKLVRALFSIAREL 529

Query: 113 ------LEDIDLLDFNDTQLFHIINS--------------IHQYDSSLLMTARTFPVSWG 152
                 ++++D L        H  +                +  +  L+M A   P    
Sbjct: 530 QPSVIFIDEVDSLLSERRDNEHEASRRLKTEFLVEFDGLPCNPEERVLVMAATNRPQELD 589

Query: 153 ------------VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
                       V LPDL +R+               L++++ K 
Sbjct: 590 EAALRRFTKRVYVTLPDLRTRI-------------MLLKRLLAKH 621


>gi|297587579|ref|ZP_06946223.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516]
 gi|297574268|gb|EFH92988.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516]
          Length = 628

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 53/217 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +++   FS        + +                     
Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSGSEFVEMFVGLGASKVRDLFKQAAEKAPCI 258

Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFP------- 148
           V +++ID +            D  +  L  ++N           +++ A   P       
Sbjct: 259 VFIDEIDAIGKRRDTAGISGNDEREQTLNQLLNEMDGFSGNSGVVILAATNRPEILDPAL 318

Query: 149 -------VSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                      V LPDL  R+      A  +KI    D   + V +         +   +
Sbjct: 319 TRPGRFDRQIPVELPDLQGRIDILKVHARKIKIEK--DLDYKAVALMTAGTSGAQLANIV 376

Query: 198 AAYIVQ--RMERSLVFAEKLVDKMDNLALSRGMGITR 232
               ++  RM R++V  E L++ ++ +   +    T 
Sbjct: 377 NEAALRAVRMGRNIVTQEDLIESVEVVIAGQQRKGTV 413


>gi|254172616|ref|ZP_04879291.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
 gi|214033545|gb|EEB74372.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4]
          Length = 796

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 69/187 (36%), Gaps = 47/187 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  +  +  + 
Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEEN 274

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 275 APAIIFIDEIDAIAPKREETHGEVEKRVVSQLLTLMDGLKSRGKVIVIGATNRPDAID-- 332

Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            P L    R       ++ +PD    ++++      R + I+ +          RS    
Sbjct: 333 -PALRRPGRFDREL--EVGVPDKQGRKEILQ--IHTRGMPIEPE--------FRRS--KV 377

Query: 213 EKLVDKM 219
            ++++K+
Sbjct: 378 LEILEKL 384



 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 75/215 (34%), Gaps = 45/215 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G+GK+ LA   +++S +   +                NI +        
Sbjct: 550 PPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIREIFRKARQA 609

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL   ++ I +    +++ A   P      
Sbjct: 610 APTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDPA 669

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208
           L  L      RL     + +  PD+    ++ +     R++ + + +    + +R E  +
Sbjct: 670 L--LRPGRFDRL-----ILVPAPDE--KARLEIFKVHTRKVPLAEDVNLEELAKRTEGYT 720

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
               E +V +     L+    +   +    +K  +
Sbjct: 721 GADIEAVVRE--AAMLAMRRALQEGIIKPGMKADE 753


>gi|151553618|gb|AAI48920.1| NVL protein [Bos taurus]
          Length = 773

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  +  
Sbjct: 209 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSS 268

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 269 APCILFIDEIDAITPKREIASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 328

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
              L       +A      + + +PD+   E+++  +   R++ + +
Sbjct: 329 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPE 367


>gi|27544736|dbj|BAC55063.1| DnaA [Mycobacterium vaccae]
          Length = 176

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI 83
             + +  ++ S+   A      I   P+     + + G SG GK+ L + 
Sbjct: 109 RYTFETFVIGSSNRFAHAATLAISEAPARAYNPLFIWGESGLGKTHLLHA 158


>gi|73982394|ref|XP_860675.1| PREDICTED: similar to 26S protease regulatory subunit 6A
           (TAT-binding protein 1) (TBP-1) (Proteasome subunit P50)
           isoform 2 [Canis familiaris]
          Length = 267

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 47  PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 106

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 107 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 166

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 167 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 220

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 221 GAQCKAVCVEAGMIALRRGAT 241


>gi|68536116|ref|YP_250821.1| recombination factor protein RarA [Corynebacterium jeikeium K411]
 gi|68263715|emb|CAI37203.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
          Length = 464

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 36/208 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113
           VIL GP G+GK+ +A++ S  S                  + I ++   +++     + +
Sbjct: 74  VILYGPPGTGKTTIASLISQVSGRRFEALSALNSGVKEVRAIIEQARKRLVLGEHTVLFI 133

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     S  +  + LL+ A T   S+ V  P L SR   + +V++S 
Sbjct: 134 DEVHRFSKTQQDALL----SAVENRTVLLVAATTENPSFSVVSP-LLSR---SLLVQLST 185

Query: 173 PDDDFLEKVIVKMF-ADRQ----IFIDKKLAAYIVQ----RMERSLVFAEKLVDKM---- 219
             D  +  V+ +    DR     + +       +V        RSL + E   + +    
Sbjct: 186 LSDADIRTVLQRALDDDRGYAGRLRVTPDAMEQLVAMAAGDARRSLTYLEAAAEGLEPDG 245

Query: 220 -DNLALSRGMGITRSLAAEVLKETQQCD 246
            D +A      + RSL   V++  +  D
Sbjct: 246 EDGVAELVASQVKRSLNKAVVRYDRDGD 273


>gi|301166020|emb|CBW25594.1| putative AAA family ATPase protein [Bacteriovorax marinus SJ]
          Length = 432

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 22/197 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +IL GP G+GK+ LA+I +  S      F+ +   ++ +       +           
Sbjct: 64  PSLILWGPPGTGKTTLAHILAANSECELYNFNAVLGGVNELKKLITTAL---QTKADFGR 120

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +  +F    H  N           +  S   + A T      V    L SR     ++++
Sbjct: 121 EAIIFVDEIHRFNKAQQDALLPYVEQGSFKFIGATTENPRSSVNKA-LLSR---VQIIEL 176

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
               ++ L  +I  +     I I  +   +I          A  +++ ++    S+G  +
Sbjct: 177 KKLSEENLVHIIENVSKKFDIKITTEAIQFIGDYSNGDARNALNILEVIEKSLASKGEEL 236

Query: 231 TRSLAAE-VLKETQQCD 246
                   VL+  ++ D
Sbjct: 237 GLETIRPLVLENAREYD 253


>gi|297810407|ref|XP_002873087.1| hypothetical protein ARALYDRAFT_908201 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318924|gb|EFH49346.1| hypothetical protein ARALYDRAFT_908201 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 810

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 240 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 300 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 357

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 358 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 397



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 513 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569


>gi|45643123|ref|NP_002524.2| nuclear valosin-containing protein-like isoform 1 [Homo sapiens]
 gi|32699415|sp|O15381|NVL_HUMAN RecName: Full=Nuclear valosin-containing protein-like; Short=NVLp;
           Short=Nuclear VCP-like protein
 gi|2406565|gb|AAB70457.1| nuclear VCP-like protein NVLp.2 [Homo sapiens]
 gi|119590120|gb|EAW69714.1| nuclear VCP-like, isoform CRA_a [Homo sapiens]
          Length = 856

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 356

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 357 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 416

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 417 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 456


>gi|299470801|emb|CBN79847.1| flagellar associated protein [Ectocarpus siliculosus]
          Length = 947

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G GK+ +A   + ++ +  F                +N+ K+ D    +
Sbjct: 390 PPRGVLMYGPPGCGKTMIARAVASETGAYCFTINGPEIMSKLSGESETNLRKAFDDAEAN 449

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ I      +++ A   P    V 
Sbjct: 450 SPAIIFIDEIDSIAPRRDKAGGEVEKRIVSQLLTLMDGIKPTSHVVVIAATNRP---NVI 506

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD++   +V+      R + +D  +
Sbjct: 507 EPALR-RFGRFDRELDIGIPDEEGRLEVL--RIKTRTMKLDDDV 547



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            S+  +  GP G GK+ LA   +++  +   S     L S+     +  + E  D  
Sbjct: 663 ASKGTLFYGPPGCGKTLLAKAIANECGANFISVKGPELLSMWFGESEANVRELFDKA 719


>gi|256619453|ref|ZP_05476299.1| recombination factor protein RarA [Enterococcus faecalis ATCC 4200]
 gi|256598980|gb|EEU18156.1| recombination factor protein RarA [Enterococcus faecalis ATCC 4200]
          Length = 425

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q + R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|47076492|dbj|BAD18153.1| transposase B of IS643 [Bacillus halodurans]
          Length = 255

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GP G GK+ +A     ++    F     ++  ++                  I   
Sbjct: 105 LILLGPPGIGKTYIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 164

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             V+++D+  +  +  +    FH+IN +++  SS+++T+   P  WG  + D
Sbjct: 165 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 215


>gi|21283306|ref|NP_646394.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486460|ref|YP_043681.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|258424053|ref|ZP_05686935.1| recombination factor protein RarA [Staphylococcus aureus A9635]
 gi|297207652|ref|ZP_06924087.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911734|ref|ZP_07129177.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204746|dbj|BAB95442.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244903|emb|CAG43364.1| putative ATPase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|257845674|gb|EEV69706.1| recombination factor protein RarA [Staphylococcus aureus A9635]
 gi|283470904|emb|CAQ50115.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus ST398]
 gi|296887669|gb|EFH26567.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300885980|gb|EFK81182.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70]
 gi|329733071|gb|EGG69408.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 424

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229


>gi|239617940|ref|YP_002941262.1| ATP-dependent metalloprotease FtsH [Kosmotoga olearia TBF 19.5.1]
 gi|310943134|sp|C5CES8|FTSH_KOSOT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|239506771|gb|ACR80258.1| ATP-dependent metalloprotease FtsH [Kosmotoga olearia TBF 19.5.1]
          Length = 645

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 64/201 (31%), Gaps = 50/201 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           ++LVGP G+GK+ LA   + ++                     + +              
Sbjct: 200 ILLVGPPGTGKTLLARAVAGEANVPFFYISGSDFVELFVGVGAARVRDLFSQAKASAPSI 259

Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGV 153
           + +++ID +            ++ +    +N I             ++M A   P     
Sbjct: 260 IFIDEIDAVGRHRGAGLGGGHDERE--QTLNQILVEMDGFDAKTGVIVMAATNRPDILDH 317

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       + +  PD     +++      R   +D  +  +++ R  R+  
Sbjct: 318 AL------LRPGRFDKKITVDPPDVKGRAEIL--KIHMRGKPVDPDVDVWLLAR--RTPG 367

Query: 211 FAEKLVDKMDNLA--LSRGMG 229
           F    ++ + N A  L+    
Sbjct: 368 FVGADLENLVNEAAILAARRK 388


>gi|194386052|dbj|BAG59590.1| unnamed protein product [Homo sapiens]
          Length = 856

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 356

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 357 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 416

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
               P L    +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 417 D---PALR---RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 456


>gi|157103374|ref|XP_001647950.1| werner helicase interacting protein [Aedes aegypti]
 gi|108884173|gb|EAT48398.1| werner helicase interacting protein [Aedes aegypti]
          Length = 560

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 65  RVVILVGPSGSGKSCLANIWSD---KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
             +IL GP G GK+ LA+I +    K  S +F  ++ ++  +  D ++ V L   DL   
Sbjct: 173 PSMILWGPPGCGKTTLAHIIAAHCKKHGSMKFVKLSATMSGVN-DVKEAVKLAKNDLAFK 231

Query: 122 NDTQLF----HIINSIHQY 136
             T +F    H  N + Q 
Sbjct: 232 RKTIMFMDEIHRFNKLQQD 250


>gi|194385100|dbj|BAG60956.1| unnamed protein product [Homo sapiens]
          Length = 589

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 191 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 250

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 251 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 310

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 311 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 350


>gi|148828420|ref|YP_001293173.1| recombination factor protein RarA [Haemophilus influenzae PittGG]
 gi|148719662|gb|ABR00790.1| outer-membrane lipoprotein carrier protein precursor [Haemophilus
           influenzae PittGG]
          Length = 446

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 37/204 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113
           +I  GP G+GK+ LA I +    +                  I ++  + L D +  + +
Sbjct: 53  MIFWGPPGTGKTTLAEIIAQCINAEVERIFAVTSGIKEIREAIDRAKQNRLADRKTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220
                 +E+++ +   D  R      + +++ L   + + +       L   E +VD  D
Sbjct: 164 SLTTAEIEQILQQAIEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
                 G  I R+L  EVL E Q 
Sbjct: 224 ET--DNGKKIDRTLLKEVLGERQA 245


>gi|118086469|ref|XP_418979.2| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           2 [Gallus gallus]
          Length = 562

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 28/148 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  S   +      + D+     N+ 
Sbjct: 158 PSLILWGPPGCGKTTLAHIIANSSKKKGMRFVTLSATSAKTND-----VRDVISQAQNEK 212

Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +LF           H  N   Q          +  L+ A T   S+ V    L SR    
Sbjct: 213 RLFKRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAA-LLSR---C 268

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193
            V+ +     + +E ++++      + +
Sbjct: 269 RVIVLEKLSVEAMEAILLRAVKSLGVQV 296


>gi|242039557|ref|XP_002467173.1| hypothetical protein SORBIDRAFT_01g020910 [Sorghum bicolor]
 gi|241921027|gb|EER94171.1| hypothetical protein SORBIDRAFT_01g020910 [Sorghum bicolor]
          Length = 810

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 244 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 303

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 304 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSID-- 361

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 362 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 401



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 517 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 573


>gi|261337911|ref|ZP_05965795.1| ATPase, AAA family [Bifidobacterium gallicum DSM 20093]
 gi|270277391|gb|EFA23245.1| ATPase, AAA family [Bifidobacterium gallicum DSM 20093]
          Length = 460

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 38/206 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I + +S        A +     +        E + +    +T L
Sbjct: 62  IILFGPPGVGKTTLATIVAQQSGRAFEELSAVTSGVKDVRAVLARAHERL-VSSGQETVL 120

Query: 127 F--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F   +         +LL          + A T   S+ V  P L SR   + VVK+   D
Sbjct: 121 FIDEVHRFSKSQQDALLPSVENRDITFIAATTENPSFSVIKP-LLSR---SVVVKLESLD 176

Query: 175 DDFLEKVIVKMF-ADRQI----FIDKKLAAYIVQRM-----ERSLVFAEKLVDKMDNLAL 224
            D LE VI +   ++  +     I  +    I+ RM      +SL   E     +D+ + 
Sbjct: 177 HDELEDVIRRAIVSEHGLNETVSISDQAVEDII-RMAGGDARKSLTILEAAAGALDDESE 235

Query: 225 SRGM----------GITRSLAAEVLK 240
           ++             IT  + A+V+ 
Sbjct: 236 AQRGNGTTSQEGIPEITAQIVAQVMD 261


>gi|127512950|ref|YP_001094147.1| recombination factor protein RarA [Shewanella loihica PV-4]
 gi|126638245|gb|ABO23888.1| AAA ATPase, central domain protein [Shewanella loihica PV-4]
          Length = 443

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++  GP G+GK+ LA + +  + +   R S +   +  I         +E    +     
Sbjct: 52  MMFWGPPGTGKTTLAELVAHYANAHVERISAVTSGVKEIR------AAIEHAKSVAQSRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I    D+ + K++ +   D       RQ+ +  ++A  +    +     A  L++ M
Sbjct: 162 IKRLQDEEIIKIVRQALEDGERGLGKRQLKMPNEVAGKLASLCDGDARKALNLIELM 218


>gi|91086235|ref|XP_966692.1| PREDICTED: similar to transitional endoplasmic reticulum ATPase
           TER94 isoform 1 [Tribolium castaneum]
 gi|270011017|gb|EFA07465.1| transitional endoplasmic reticulum ATPase TER94 [Tribolium
           castaneum]
          Length = 803

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + ++++D +                 QL  +++ + +    ++M A   P      
Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 354

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 355 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLADDVDLEQI----AAETHGHVGA 407

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 408 DLASLC------SEAALQQIREKMD 426



 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 564


>gi|324015459|gb|EGB84678.1| transposase domain protein [Escherichia coli MS 60-1]
          Length = 168

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 24/127 (18%)

Query: 49  IEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106
                R +     W      V+L G SG GKS LA    D      +     S   +L +
Sbjct: 1   NGAQFRQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGVVGQGYRARFYSAGELLQE 60

Query: 107 TRKP------------------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTAR 145
            RK                   ++++D+  +  +  +   LF +I   ++   SL++T+ 
Sbjct: 61  LRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLFELIAHRYERG-SLVITSN 119

Query: 146 TFPVSWG 152
                WG
Sbjct: 120 HPFSMWG 126


>gi|295113243|emb|CBL31880.1| Recombination protein MgsA [Enterococcus sp. 7L76]
 gi|315161375|gb|EFU05392.1| recombination factor protein RarA [Enterococcus faecalis TX0645]
 gi|323481114|gb|ADX80553.1| recombination factor protein RarA [Enterococcus faecalis 62]
          Length = 425

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q + R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|257079358|ref|ZP_05573719.1| AAA ATPase [Enterococcus faecalis JH1]
 gi|256987388|gb|EEU74690.1| AAA ATPase [Enterococcus faecalis JH1]
          Length = 425

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q + R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|239819394|gb|ACS28251.1| cell division control protein [Nicotiana glutinosa]
          Length = 805

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + +++
Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEEV 398



 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570


>gi|60735077|dbj|BAD91024.1| valosin containing protein-1 [Eisenia fetida]
 gi|147225256|dbj|BAF62455.1| valosine containing peptide-1 [Eisenia fetida]
          Length = 808

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 295 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 354

Query: 155 L 155
           L
Sbjct: 355 L 355



 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 508 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKA 564


>gi|134046525|ref|YP_001098010.1| AAA family ATPase [Methanococcus maripaludis C5]
 gi|132664150|gb|ABO35796.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C5]
          Length = 784

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEEN 269

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +    ++           QL  +++ +      +++ A   P S  + 
Sbjct: 270 SPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLLDGLEGRGQVVILAATNRPDSIDMA 329

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
           L     RL       I +PD    ++++      R + +   
Sbjct: 330 LRR-PGRLDRELT--IGIPDRHARKEILQ--IHTRNMPLQPD 366



 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++S +   S
Sbjct: 540 PPKGVLLFGPPGTGKTLLAKAVANESEANFIS 571


>gi|126434949|ref|YP_001070640.1| recombination factor protein RarA [Mycobacterium sp. JLS]
 gi|126234749|gb|ABN98149.1| Recombination protein MgsA [Mycobacterium sp. JLS]
          Length = 445

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 27/156 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
           VIL GP G+GK+ LA++ S  +          S   K + +++   R+ +L        +
Sbjct: 62  VILYGPPGTGKTTLASLISHATGRRFEALSALSAGVKEVRAVIETARQGILRGQQTVLFI 121

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 122 DEVHRFSKTQQDALL----AAVENRIVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 173

Query: 173 PDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQ 203
              D + +V+ +  AD R +     +       IVQ
Sbjct: 174 LAPDSIAEVVRRAVADPRGLADSVDVSDDAVDLIVQ 209


>gi|29376501|ref|NP_815655.1| recombination factor protein RarA [Enterococcus faecalis V583]
 gi|29343965|gb|AAO81725.1| ATPase, AAA family [Enterococcus faecalis V583]
          Length = 425

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q + R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|302525831|ref|ZP_07278173.1| recombination factor protein RarA [Streptomyces sp. AA4]
 gi|302434726|gb|EFL06542.1| recombination factor protein RarA [Streptomyces sp. AA4]
          Length = 460

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK---------PVL 112
           V+L GP G+GK+ LAN+ S  +          S   K +  ++ + R+          + 
Sbjct: 73  VLLYGPPGTGKTTLANLVSIATGRRFVAMSALSAGVKEVRGVIEEARRRRQYNTENTVLF 132

Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++++          L        +  + LL+ A T   S+ V  P L SR   + V+++ 
Sbjct: 133 IDEVHRFSKTQQDALL----GAVEDRTVLLVAATTENPSFSVVSP-LLSR---SLVLQLR 184

Query: 172 LPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203
              DD +  V+ +  AD R     + +     A++V+
Sbjct: 185 PLTDDDIVAVLERALADERGLGGELTLTDDARAHLVR 221


>gi|327311518|ref|YP_004338415.1| replication factor C large subunit [Thermoproteus uzoniensis
           768-20]
 gi|326947997|gb|AEA13103.1| replication factor C large subunit [Thermoproteus uzoniensis
           768-20]
          Length = 422

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 67/193 (34%), Gaps = 30/193 (15%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVV------ILVGPSGSGKSCLANIWSDK----------- 87
           V +      +   +W     + +      +L GP G GK+ L +  +++           
Sbjct: 30  VCARFRAPEQFCKAWAKNKDKKISEAKAVLLAGPPGIGKTTLVHALANEINYELVELNAS 89

Query: 88  -----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSL 140
                 R            S+     + +L +++D L+  +    L  II+ I      +
Sbjct: 90  DVRTAERIREVVGRGLREGSLFGYAGRLILFDEVDGLNPKEDLGGLNSIIDLIETARVPI 149

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           +MTA      W   L  L      + VV +    +D + +V+ ++    +I  ++     
Sbjct: 150 VMTANNP---WDQRLRPLR---DVSLVVSLRRLAEDDVVEVLRRICDSEKIKCEEDALRA 203

Query: 201 IVQRMERSLVFAE 213
           + +  +  L  A 
Sbjct: 204 LARSSDGDLRAAI 216


>gi|323508164|emb|CBQ68035.1| probable RPT1-26S proteasome regulatory subunit [Sporisorium
           reilianum]
          Length = 477

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 61/214 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +T    I   L    +     ++          
Sbjct: 252 PPKGVLLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 311

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                  +++D +                  +  +IN         +  ++ A   P + 
Sbjct: 312 KACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDARGNIKVLMATNRPDTL 371

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM----- 205
              L  L   RL     V+  LPD+D    ++      R + ++K +  +++ R+     
Sbjct: 372 DPAL--LRPGRLD--RRVEFGLPDNDGRAHILRIHA--RSMSVEKDIRYHLIARLCPNAT 425

Query: 206 ------------------ERSLVFAEKLVDKMDN 221
                              R +      +D +D 
Sbjct: 426 GAELRSVATEAGMFAIRARRKMATERDFLDAVDK 459


>gi|282856171|ref|ZP_06265454.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455]
 gi|282585930|gb|EFB91215.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455]
          Length = 439

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 26/171 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +I  GP G GK+ LA I ++++++   +              + ++  +     +  V +
Sbjct: 52  MIFWGPPGVGKTTLARIIANQTKAEFINFSAVTSGIKEIRTVMQQAESNRAFGGKTIVFV 111

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ V    L SR     V  +   
Sbjct: 112 DEIHRFNKAQQDAFLPF---VEKGSIILIGATTENPSFEVNGA-LLSR---CKVFVLQAL 164

Query: 174 DDDFLEKVIVKMFAD-----RQ-IFIDKKLAAYIVQRMERSLVFAEKLVDK 218
             D L  ++ +  AD     RQ + I  +L   I          A   ++ 
Sbjct: 165 TTDELVSLLQRALADPRGFGRQNVRIAPELLEMIANFANGDARSALSTLEM 215


>gi|257422233|ref|ZP_05599223.1| recombination factor protein rarA [Enterococcus faecalis X98]
 gi|257164057|gb|EEU94017.1| recombination factor protein rarA [Enterococcus faecalis X98]
 gi|315157272|gb|EFU01289.1| recombination factor protein RarA [Enterococcus faecalis TX0043]
          Length = 425

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q + R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGNYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|145340922|ref|XP_001415566.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575789|gb|ABO93858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 804

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 301 APAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGMKSRSHIIVMGATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + +D+ +
Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLDEAV 398



 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 570


>gi|85691123|ref|XP_965961.1| ATPase [Encephalitozoon cuniculi GB-M1]
 gi|74697616|sp|Q8SSJ5|CDC48_ENCCU RecName: Full=Cell division control protein 48
 gi|19068528|emb|CAD24996.1| PROTEIN OF THE CDC48/PAS1/SEC28 FAMILY OF ATPases [Encephalitozoon
           cuniculi GB-M1]
          Length = 780

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 66/166 (39%), Gaps = 39/166 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID L                 QL  +++ +    + +++ A   P S    
Sbjct: 301 SPAIIFIDEIDALAPKREKSQGEVERRIVSQLLTLMDGMKARSNVIVLGATNRPNSID-- 358

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +       ++I +PD+    +++      + + + + +
Sbjct: 359 -PALR---RYGRFDREIEIGVPDETGRLEIL--RIHTKNMKMSEDV 398



 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 47/164 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P++ V+  GP G GK+ LA   + + ++   S     L S                    
Sbjct: 514 PAKGVLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFARARGA 573

Query: 109 KPVLL--EDIDLLD----FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
            P +L  ++ID +      ND           QL   ++ I+Q  +  ++ A   P    
Sbjct: 574 APCVLFFDEIDSIAKARSGNDGSSGATDRMLNQLLSEMDGINQKKNVFVIGATNRPDQLD 633

Query: 153 --------------VCLPDLCSR---LKAATVVKISLPDDDFLE 179
                         + LPDL SR   L+A        P+ D  +
Sbjct: 634 SALMRPGRLDQLVYIPLPDLDSRVSILQATLKKTPLSPEIDLRQ 677


>gi|220932040|ref|YP_002508948.1| AAA ATPase central domain protein [Halothermothrix orenii H 168]
 gi|219993350|gb|ACL69953.1| AAA ATPase central domain protein [Halothermothrix orenii H 168]
          Length = 450

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 46/214 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ LA + + K+        A +     +  ++    K   L  I  + F
Sbjct: 57  LILYGPPGCGKTSLAQVIARKTEGKFIRINAVTSGVSKIREVIDKASKNRSLHGIKTILF 116

Query: 122 -NDTQLFHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            ++    H  N           +  +  L+ A T    + V  P L SR   + +V++  
Sbjct: 117 IDEI---HRFNKSQQDALLPAVESGTITLIGATTENPYFEVNSP-LLSR---SRIVRLKP 169

Query: 173 PDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIVQRMERSLV--FAEKLVDKMDNLA 223
              + + K++       +R +      I +    Y+      S+    A   ++ ++   
Sbjct: 170 LKKEDIIKILKNALNNEERGLGNYNIDISQDALQYLA-----SIAGGDARTALNGLEIAV 224

Query: 224 LS-----------RGMGITRSLAAEVLKETQQCD 246
           L+               I+ SL  ++LK  +Q D
Sbjct: 225 LTTPPDKEGIIHINKNIISESLQKKLLKYDKQGD 258


>gi|325001185|ref|ZP_08122297.1| recombination factor protein RarA [Pseudonocardia sp. P1]
          Length = 462

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 26/144 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR-------FSNIAKSLDSILIDTRK---------P 110
           V+L GP G+GK+ LA + +    + R        S   K L +++ + R+          
Sbjct: 68  VLLYGPPGTGKTTLARLMAGAGGAERHFVALSALSAGVKELRAVIEEARRRRDRSGTSTV 127

Query: 111 VLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           + ++++          L        +    LL+ A T   S+ V  P L SR   + V++
Sbjct: 128 LFIDEVHRFSRTQQDALL----GAVEDRLVLLVAATTENPSFSVVSP-LLSR---SLVLQ 179

Query: 170 ISLPDDDFLEKVIVKM-FADRQIF 192
           +    +D +  ++ +   ++R + 
Sbjct: 180 LQSLGEDDVRALLRRAVASERGLA 203


>gi|221632730|ref|YP_002521951.1| Holliday junction DNA helicase RuvB [Thermomicrobium roseum DSM
           5159]
 gi|254767447|sp|B9KZ09|RUVB_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|221155832|gb|ACM04959.1| Holliday junction DNA helicase RuvB [Thermomicrobium roseum DSM
           5159]
          Length = 353

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 28/222 (12%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           V  ++  A+R        P   ++  GP G GK+ LA I + +           +++   
Sbjct: 36  VKESLAIAIRAAQE-RGEPLDHLLFYGPPGLGKTTLAGIIAAEMGVNLRITSGPAIERPG 94

Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY---------DSSLLMTARTFPVSWGVCL 155
                   L   D+L  ++    H +N + +             L++       S  + L
Sbjct: 95  DLVSILTNLRPGDVLFIDEI---HRLNRLVEEILYPAMEDFAVDLVIGKGPAARSVRIAL 151

Query: 156 PD------------LCS--RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           P             L S  R +     ++   D   L  ++ +     Q+ I    A  I
Sbjct: 152 PRFTLVGATTRLALLTSPLRDRFGATYRLDFYDTAALRAIVERAARILQVPITSDGAEEI 211

Query: 202 VQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKET 242
            +R   +   A +L+ ++ D   +     ITR LA   L + 
Sbjct: 212 ARRGRGTPRIAIRLLKRVRDYAQVIGDGTITRELARLALDQL 253


>gi|33866690|ref|NP_898249.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. WH 8102]
 gi|33633468|emb|CAE08673.1| putative ATPase, AAA family [Synechococcus sp. WH 8102]
          Length = 751

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I ++ +R+   S  A       +          ++        L
Sbjct: 74  LILHGPPGVGKTTLARIVANHTRAHFSSLNAVLAGVKDLRAEVDAAKLRLERHGLRSI-L 132

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  +  L+ A T    + V    L SR   + + ++   +
Sbjct: 133 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKA-LVSR---SRLFRLLPLE 188

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            D L +++ +   D       R++ +    AA++V             ++
Sbjct: 189 PDDLHQLLQRALNDEERGYGTRRVTVTPDAAAHLVDVAGGDARSLLNALE 238


>gi|317010695|gb|ADU84442.1| recombination factor protein RarA [Helicobacter pylori
           SouthAfrica7]
          Length = 391

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 69/184 (37%), Gaps = 21/184 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+++  K  A  +  I+     Y++     S   A  L++ +D L+      IT   
Sbjct: 151 KSDLDRLCAKALALLKKQIEPNAKTYLLNN---SAGDARALLNLLD-LSAKIENPITLKT 206

Query: 235 AAEV 238
              +
Sbjct: 207 IKSL 210


>gi|225174582|ref|ZP_03728580.1| AAA ATPase central domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169709|gb|EEG78505.1| AAA ATPase central domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 445

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 31/198 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121
           ++  GP G+GK+ LA I ++K+ +      A S     L   +   R  +  E    + F
Sbjct: 55  LLFYGPPGTGKTTLAEIIAEKTNAAFVRVNAVSSSVSELRKEMEAARNRLAQEGKRTVLF 114

Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            D    H  N           +    +L+ A T    + V  P L SR++   +      
Sbjct: 115 VDEI--HRFNKAQQDALLPAVEKGIVVLIGATTENPYFTVNAP-LLSRMR---IFPFEPL 168

Query: 174 DDDFLEKVIVKM-----FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR-- 226
             + +  ++V+           +    +   ++          A   ++     AL+   
Sbjct: 169 SAEDVRALLVRAQSEPEARLETVEFTDEALDHLAMMANGDARTALNALEM--AAALASPG 226

Query: 227 ---GMGITRSLAAEVLKE 241
                 +  +L  E ++ 
Sbjct: 227 EDGNKEVDITLVEEAVQR 244


>gi|225386739|ref|ZP_03756503.1| hypothetical protein CLOSTASPAR_00487 [Clostridium asparagiforme
           DSM 15981]
 gi|225047150|gb|EEG57396.1| hypothetical protein CLOSTASPAR_00487 [Clostridium asparagiforme
           DSM 15981]
          Length = 443

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 24/172 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I  GP G+GK+ LA + ++ + +      A       ++       +++ +     T
Sbjct: 55  GSIIFYGPPGTGKTTLAKVIANTTSADFRQINATVAGKKDMEEVVHAAKDNMGMYGKK-T 113

Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V    L SR   + + ++  
Sbjct: 114 ILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LLSR---SRIFELKP 169

Query: 173 PDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
            + + + ++I +     DR +      ID   A ++          A   V+
Sbjct: 170 LEKEDIRELIRRAVYDRDRGMGTYDAVIDDDAAEFLADTANGDARAALNAVE 221


>gi|11265361|pir||T48355 transitional endoplasmic reticulum ATPase - Arabidopsis thaliana
 gi|7378614|emb|CAB83290.1| transitional endoplasmic reticulum ATPase [Arabidopsis thaliana]
          Length = 843

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 273 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 332

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 333 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 390

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 391 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 430



 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 546 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 602


>gi|300813628|ref|ZP_07093956.1| recombination factor protein RarA [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512264|gb|EFK39436.1| recombination factor protein RarA [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 436

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 80/202 (39%), Gaps = 32/202 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLL 119
             ++  GP G GK+ LA I ++ +        A +     L  +L   +      +I+ +
Sbjct: 53  NSLLFYGPPGVGKTTLAKIIANLTNKNFVELSAVTSNIKELREVLQKAQDDFKFSNIETI 112

Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            F ++    H  N           +    +L+ A T    + V    L SRL+   ++ +
Sbjct: 113 VFIDEI---HRFNKTQQDALLPYVERGIIILIGATTENPYFEVNKA-LLSRLQ---ILNL 165

Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              ++  + K+I +  +D+       +I + ++   ++++    S      L++ ++   
Sbjct: 166 KALENKDMNKLIDRAISDKIKGFGNLKINLSEQAREFLIRN---SSGDGRFLLNSLEIAV 222

Query: 224 LSRGMGIT-RSLAAEVLKETQQ 244
           LS        +L  +VL+ + Q
Sbjct: 223 LSTDKVDNEVNLTLDVLENSMQ 244


>gi|294893598|ref|XP_002774552.1| cell division cycle protein, putative [Perkinsus marinus ATCC
           50983]
 gi|239879945|gb|EER06368.1| cell division cycle protein, putative [Perkinsus marinus ATCC
           50983]
          Length = 808

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 33/150 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 244 PPRGVLLYGPPGCGKTLIARAIANETGAFFFLINGPEVMSKMAGEAESNLRKAFEEAEKN 303

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 304 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGLKSRGQVVILGATNRPNS---V 360

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIV 183
            P L  R  +    + I +PDD+   +++ 
Sbjct: 361 DPALR-RFGRFDRELDIGVPDDNGRMEILR 389


>gi|197121182|ref|YP_002133133.1| recombination factor protein RarA [Anaeromyxobacter sp. K]
 gi|196171031|gb|ACG72004.1| AAA ATPase central domain protein [Anaeromyxobacter sp. K]
          Length = 437

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 41/203 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS--------------NIAKSLDSILIDTRKP 110
             +IL GP G+GK+ LA I + ++ +                    A      +   R  
Sbjct: 52  PSLILWGPPGTGKTTLARIVAQRTGADFVPFSAVLGGVKEIREIVAAARDRRRMHRKRTI 111

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + +++I          F       +  +  L+ A T   S+ V    L SR     V  +
Sbjct: 112 LFVDEIHRFTRAQQDAFLPH---VEDGTITLIGATTENPSFEVNAA-LLSR---CRVATL 164

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYI---------VQRMERSLVFAEKLVDKMDN 221
               +D +  ++     DR +   + LA  +         + R+  S   A K ++ ++ 
Sbjct: 165 RALTEDEVAALL-----DRAVAAPEGLAGAVALTPEARDTIARL--SYGDARKALNALEV 217

Query: 222 LA----LSRGMGITRSLAAEVLK 240
            A    L+    + ++ A E L+
Sbjct: 218 SAAAVRLAGRPAVEKADAEEALQ 240


>gi|187923044|ref|YP_001894686.1| recombination factor protein RarA [Burkholderia phytofirmans PsJN]
 gi|187714238|gb|ACD15462.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN]
          Length = 437

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 20/189 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +D   +   +    ++ S + D R+ V    I   + + T +
Sbjct: 48  MILWGPPGVGKTTLARLMADAFHAEFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 105

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +    + + A T   S+ V    L SR   A V  +    
Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLT 161

Query: 175 DDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITR 232
           DD   +++ +   +   +    +    ++   +         ++ +   A  +    I  
Sbjct: 162 DDEQRELLERAQQELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKTTEIDG 221

Query: 233 SLAAEVLKE 241
           +L    L E
Sbjct: 222 ALLGSALAE 230


>gi|149190994|ref|ZP_01869255.1| hypothetical protein VSAK1_00065 [Vibrio shilonii AK1]
 gi|148835128|gb|EDL52104.1| hypothetical protein VSAK1_00065 [Vibrio shilonii AK1]
          Length = 452

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYADAEVERVSAVTSGVKDIRAAIERAREN--KLAGKRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            D   +  V+ +   D  R +          +   +        RM  SL + E L D  
Sbjct: 166 LDKADILLVLEQARDDEKRGLGTIAANFHDNVLERLAELVNGDARM--SLNYLELLYDMA 223

Query: 220 DNLALSRGMGITRSLAAEV 238
           ++ A      IT +L AEV
Sbjct: 224 EDNA-QGEKDITLALLAEV 241


>gi|300784614|ref|YP_003764905.1| ATPase [Amycolatopsis mediterranei U32]
 gi|299794128|gb|ADJ44503.1| putative ATPase [Amycolatopsis mediterranei U32]
          Length = 458

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL--------------DSILIDTRKPVL 112
           V+L GP G+GK+ LAN+ S  +     +  A S                         + 
Sbjct: 74  VLLYGPPGTGKTTLANLVSIATGRRFVAMSALSAGVKEVRGVIEEARRRRQYNAENTVLF 133

Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++++          L        +  + LL+ A T   S+ V  P L SR   + V+++ 
Sbjct: 134 IDEVHRFSKTQQDALL----GAVEDRTVLLVAATTENPSFSVVSP-LLSR---SLVLQLR 185

Query: 172 LPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203
              D+ +  ++ +  AD R     + + +   A++V+
Sbjct: 186 PLTDEDITALLERALADERGLGGELTLTEDARAHLVR 222


>gi|294939027|ref|XP_002782298.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC
           50983]
 gi|239893837|gb|EER14093.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC
           50983]
          Length = 747

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 33/150 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 183 PPRGVLLYGPPGCGKTLIARAIANETGAFFFLINGPEVMSKMAGEAESNLRKAFEEAEKN 242

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 243 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGLKSRGQVVILGATNRPNS---V 299

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIV 183
            P L  R  +    + I +PDD+   +++ 
Sbjct: 300 DPALR-RFGRFDRELDIGVPDDNGRMEILR 328


>gi|225075711|ref|ZP_03718910.1| hypothetical protein NEIFLAOT_00727 [Neisseria flavescens
           NRL30031/H210]
 gi|224952982|gb|EEG34191.1| hypothetical protein NEIFLAOT_00727 [Neisseria flavescens
           NRL30031/H210]
          Length = 435

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 23/153 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R  +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             D L+K++ K+ A    R   I+      +V 
Sbjct: 163 SSDGLKKLVAKVLALPEYRDFTIEADAQELLVN 195


>gi|148229844|ref|NP_001079683.1| 26S protease regulatory subunit 6A-B [Xenopus laevis]
 gi|28422359|gb|AAH46948.1| Psmc3-b protein [Xenopus laevis]
          Length = 423

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEK 262

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q  + + ++ A       
Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397


>gi|315923824|ref|ZP_07920053.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622857|gb|EFV02809.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 817

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLLD 120
           + V L G  G+GK+ L   +   S    +S I      +  +        V+++D+++L 
Sbjct: 37  QTVYLHGVMGTGKTSLITYFLKDSAFVYYSAIRTEAADLTAEAGTFSPFAVVIDDLEVLA 96

Query: 121 FNDTQLFHI--INSIHQYDSSLLMTARTFPVSW 151
            +  + F++     I Q D  L++ +R+    W
Sbjct: 97  EDRREAFYLAVERLIRQKDVWLVLISRSMMPRW 129


>gi|193617621|ref|XP_001949588.1| PREDICTED: transitional endoplasmic reticulum ATPase TER94-like
           [Acyrthosiphon pisum]
          Length = 804

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADRN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + ++++D +                 QL  +++ +      ++M A   P      
Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKSSSHVIVMAATNRPNSIDSA 354

Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       + +PD   RL+   V++I   +    E+V + ++ A+    +   LA+
Sbjct: 355 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLAEEVDLEQIAAETHGHVGADLAS 411

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
                   S    +++ +KMD
Sbjct: 412 LC------SEAALQQIREKMD 426



 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 564


>gi|57650509|ref|YP_186522.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221741|ref|YP_001332563.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161353524|ref|YP_500242.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|162138568|ref|YP_494279.2| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|221141103|ref|ZP_03565596.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253733121|ref|ZP_04867286.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|258450546|ref|ZP_05698608.1| recombination factor protein RarA [Staphylococcus aureus A5948]
 gi|262048620|ref|ZP_06021503.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30]
 gi|262051167|ref|ZP_06023391.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3]
 gi|282920175|ref|ZP_06327900.1| conserved hypothetical AAA domain-containing protein yrvN
           [Staphylococcus aureus A9765]
 gi|284024684|ref|ZP_06379082.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 132]
 gi|304380776|ref|ZP_07363443.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284695|gb|AAW36789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus COL]
 gi|150374541|dbj|BAF67801.1| ATPase AAA family protein [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|253728877|gb|EES97606.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|257861704|gb|EEV84503.1| recombination factor protein RarA [Staphylococcus aureus A5948]
 gi|259160804|gb|EEW45824.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3]
 gi|259163267|gb|EEW47826.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30]
 gi|269941113|emb|CBI49499.1| putative ATPase [Staphylococcus aureus subsp. aureus TW20]
 gi|282594523|gb|EFB99508.1| conserved hypothetical AAA domain-containing protein yrvN
           [Staphylococcus aureus A9765]
 gi|302751456|gb|ADL65633.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340652|gb|EFM06585.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198674|gb|EFU29002.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329314302|gb|AEB88715.1| ATPase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728332|gb|EGG64769.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 424

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229


>gi|49483872|ref|YP_041096.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425751|ref|ZP_05602175.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428411|ref|ZP_05604809.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431049|ref|ZP_05607428.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433735|ref|ZP_05610093.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436650|ref|ZP_05612694.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus M876]
 gi|282904207|ref|ZP_06312095.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160]
 gi|282906033|ref|ZP_06313888.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908947|ref|ZP_06316765.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911264|ref|ZP_06319066.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914432|ref|ZP_06322218.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899]
 gi|282919401|ref|ZP_06327136.1| ATPase [Staphylococcus aureus subsp. aureus C427]
 gi|282924726|ref|ZP_06332394.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|283958387|ref|ZP_06375838.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503506|ref|ZP_06667353.1| ATPase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510524|ref|ZP_06669230.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp.
           aureus M809]
 gi|293531064|ref|ZP_06671746.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015]
 gi|297590829|ref|ZP_06949467.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|49242001|emb|CAG40698.1| putative ATPase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271445|gb|EEV03591.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275252|gb|EEV06739.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278252|gb|EEV08894.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281828|gb|EEV11965.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284001|gb|EEV14124.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313561|gb|EFB43956.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317211|gb|EFB47585.1| ATPase [Staphylococcus aureus subsp. aureus C427]
 gi|282321613|gb|EFB51938.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899]
 gi|282324959|gb|EFB55269.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327211|gb|EFB57506.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331325|gb|EFB60839.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595825|gb|EFC00789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160]
 gi|283790536|gb|EFC29353.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920332|gb|EFD97398.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015]
 gi|291095172|gb|EFE25437.1| ATPase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466888|gb|EFF09408.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp.
           aureus M809]
 gi|297575715|gb|EFH94431.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437905|gb|ADQ76976.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195528|gb|EFU25915.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 424

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229


>gi|262202249|ref|YP_003273457.1| ATPase AAA [Gordonia bronchialis DSM 43247]
 gi|262085596|gb|ACY21564.1| AAA ATPase central domain protein [Gordonia bronchialis DSM 43247]
          Length = 460

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 30/182 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
           V+L GP G+GK+ +A++ S  +          S   K + +++   R+ ++        +
Sbjct: 66  VLLYGPPGTGKTTMASLISRATGGRFEALSALSAGVKEVRAVIDIARRRLVEGQQTVLFI 125

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L        +    LL+ A T   S+ V  P L SR   + V+++  
Sbjct: 126 DEVHRFSKTQQDALL----DAVENRIVLLVAATTENPSFSVVAP-LLSR---SLVLQLRS 177

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             DD + +V+ +  AD R +     I      ++V     S   A + +  ++  A +  
Sbjct: 178 LSDDDILEVLGRAVADPRGLDGRVEITDAALDHLVAV---SGGDARRALTALEASADAAL 234

Query: 228 MG 229
             
Sbjct: 235 RE 236


>gi|226227315|ref|YP_002761421.1| ATPase [Gemmatimonas aurantiaca T-27]
 gi|226090506|dbj|BAH38951.1| ATPase [Gemmatimonas aurantiaca T-27]
          Length = 459

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 28/176 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G GK+ LA + +  + +   S  A S    +   R+ V   +        T L
Sbjct: 58  MVFWGPPGVGKTTLARLLAQSTEAAFVSFSAVS--DGVARVREIVAEAERRRDGGRGTIL 115

Query: 127 F----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N   Q          + +L+ A T   S+ +    L SR++   +  I +  
Sbjct: 116 FVDEIHRFNRAQQDAFLPHVETGTVVLIGATTENPSFALTGA-LLSRVRVMVLEAIPV-- 172

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              LE ++ +   D       R + ID      +    E S   A +L+  ++  A
Sbjct: 173 -STLEGLVQRAVEDRDRGLGARGLSIDDDARHLLA---ESSDGDARRLLGVLEAAA 224


>gi|160875433|ref|YP_001554749.1| recombination factor protein RarA [Shewanella baltica OS195]
 gi|160860955|gb|ABX49489.1| AAA ATPase central domain protein [Shewanella baltica OS195]
 gi|315267623|gb|ADT94476.1| AAA ATPase central domain protein [Shewanella baltica OS678]
          Length = 443

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 35/196 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +     
Sbjct: 52  MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAKAVAESRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           I     D +  ++ +  +D       RQ  +   +   + Q  +     A  L++ M ++
Sbjct: 162 IKRLSHDEIAHIVTQALSDTERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMGDM 221

Query: 223 ALSRGMGITRSLAAEV 238
            L+ G   T  +  +V
Sbjct: 222 -LADGGTFTTEMLIQV 236


>gi|225456951|ref|XP_002281671.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297733738|emb|CBI14985.3| unnamed protein product [Vitis vinifera]
          Length = 814

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 246 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 305

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +      +++ A   P S    
Sbjct: 306 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSID-- 363

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + +   +
Sbjct: 364 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSDDV 403



 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 519 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 575


>gi|52425453|ref|YP_088590.1| recombination factor protein RarA [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307505|gb|AAU38005.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 449

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 22/145 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GPSG GK+ LA I + ++ +    FS +   +  I     +     + D      T
Sbjct: 63  MIFWGPSGVGKTTLAQIIAHQTNAKFITFSAVVSGIKDIKKIMEEA----ETDREMGEKT 118

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  S +L+ A T   S+ +    L SR     V  +  
Sbjct: 119 IVFIDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSA-LLSR---CKVFVLEA 174

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL 197
             ++ +  ++ +     Q FI  ++
Sbjct: 175 LSNNDIVLLLKQALNHPQAFIPLEV 199


>gi|46201680|ref|ZP_00054588.2| COG0593: ATPase involved in DNA replication initiation
           [Magnetospirillum magnetotacticum MS-1]
          Length = 286

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 26/125 (20%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P     +  + +V    E A                 + L G  G GK+ L +  +   R
Sbjct: 118 PLDARFTFKNFVVGKPNEFAWAAARRIAEADQVSFNPLFLYGGVGLGKTHLMHAIAHHIR 177

Query: 90  ST----------------RFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---TQL 126
                             RF    +  D++    +      ++++D+  +   D    + 
Sbjct: 178 ERNPERSVLYLSAEKFMYRFIRALRGQDTMSFKEQFRSVDVLMIDDVQFIAGKDATQEEF 237

Query: 127 FHIIN 131
           FH  N
Sbjct: 238 FHTFN 242


>gi|319652986|ref|ZP_08007091.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2]
 gi|317395335|gb|EFV76068.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2]
          Length = 275

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 16/75 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P + ++L GP G+GK+ LA   + +  +T FS      + + +                 
Sbjct: 186 PPKGILLYGPPGTGKTLLAQAIAKELGATFFSTSGSGFNELFVGVGASRVRNLFQNARKH 245

Query: 111 ----VLLEDIDLLDF 121
               V ++++D L  
Sbjct: 246 APAVVFIDEVDALAG 260


>gi|307275918|ref|ZP_07557051.1| recombination factor protein RarA [Enterococcus faecalis TX2134]
 gi|306507248|gb|EFM76385.1| recombination factor protein RarA [Enterococcus faecalis TX2134]
          Length = 425

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q + R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|221485041|gb|EEE23331.1| werner helicase interacting protein, putative [Toxoplasma gondii
           GT1]
          Length = 586

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 76/240 (31%), Gaps = 43/240 (17%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL-----VHSAIEQAVRLIDSWPSWPSRV 66
           +P  ++ D  +     +  +       S ++ +     +         L+++        
Sbjct: 72  LPADRRGDPGRRDAVSVPLAERLRPA-SLEEYVGQRGCIQGGRGSIRELLEA---GHLPS 127

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G GK+    I     RS    N A SL   +      V     D+        
Sbjct: 128 LILWGPPGCGKT---TIALLAGRSVGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEAL 184

Query: 126 -----------LF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRL 162
                      LF    H  N   Q          +  L+ A T   S+ V    L SR 
Sbjct: 185 TLRATTKQKTVLFLDEIHRFNKAQQDALLPHVETGTITLIGATTENPSFEVNRA-LLSR- 242

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
               V K+    ++ L  ++ +   +  + I +     I +  +     A + ++ ++N 
Sbjct: 243 --CRVCKLEPLTEEDLTTILQRAAKEENVTITEAAVRVICRLAD---GDARRALNMLENA 297


>gi|325120694|emb|CBZ56249.1| putative ATPase, AAA family domain containing protein [Neospora
           caninum Liverpool]
          Length = 1056

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 32/180 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTR----------FSNIAKSLDSILIDTRKPVLLE 114
             +IL GP G GK+ LA +    +               S +   ++ +    ++ + L 
Sbjct: 616 PSLILWGPPGCGKTTLALLAGRCTNRKSPLSLPPVFKKMSAVTCGVNDVRKVVQEALTL- 674

Query: 115 DIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                    T LF    H  N           +  +  L+ A T   S+ V    L SR 
Sbjct: 675 --RATTKQKTILFLDEIHRFNKAQQDALLPHVESGTVTLIGATTENPSFEVNRA-LLSR- 730

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
               V K+    +D L  ++ +   +  + + +     + +  +     A + ++ ++N 
Sbjct: 731 --CRVCKLEPLTEDNLTVILQRAAKEENVTVTEAAVRVLCRLAD---GDARRALNMLENA 785


>gi|288929609|ref|ZP_06423453.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329114|gb|EFC67701.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108]
          Length = 425

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 40/218 (18%)

Query: 39  SRDDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--SRST 91
           S DD      LV         +I+          IL GP G GK+ LA I + K  +   
Sbjct: 13  SLDDYVGQKHLVGP-NAVLRNMIE---GGRIPSFILWGPPGVGKTTLAQIVAKKLETPFY 68

Query: 92  RFSNIAKSLDSI-----------LIDTRKPVL-LEDIDLLDFNDT-QLFHIINSIHQYDS 138
             S +   +  +              +  P+L +++I     +    L        +   
Sbjct: 69  TLSAVTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSLL----GAVEKGI 124

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM------FADRQIF 192
             L+ A T   S+ V  P L SR     +  +     + LE++I +          R I 
Sbjct: 125 VTLIGATTENPSFEVIRP-LLSR---CQLYVLQSLSKEDLEELIQRALHTDVVLQQRNIE 180

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           + +  A  +++           +++ +   + +    +
Sbjct: 181 VKESTA--LIRYSGGDARKLLNILELVVEASPANASPV 216


>gi|227519321|ref|ZP_03949370.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX0104]
 gi|227555471|ref|ZP_03985518.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           HH22]
 gi|229545438|ref|ZP_04434163.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX1322]
 gi|255975483|ref|ZP_05426069.1| AAA ATPase [Enterococcus faecalis T2]
 gi|256762908|ref|ZP_05503488.1| recombination factor protein RarA [Enterococcus faecalis T3]
 gi|256853493|ref|ZP_05558863.1| recombination factor protein RarA [Enterococcus faecalis T8]
 gi|256961533|ref|ZP_05565704.1| AAA ATPase [Enterococcus faecalis Merz96]
 gi|257087183|ref|ZP_05581544.1| AAA ATPase [Enterococcus faecalis D6]
 gi|257090260|ref|ZP_05584621.1| recombination factor protein rarA [Enterococcus faecalis CH188]
 gi|257419659|ref|ZP_05596653.1| recombination factor protein rarA [Enterococcus faecalis T11]
 gi|293384708|ref|ZP_06630563.1| ATPase, AAA family [Enterococcus faecalis R712]
 gi|293387408|ref|ZP_06631963.1| ATPase, AAA family [Enterococcus faecalis S613]
 gi|294779740|ref|ZP_06745127.1| recombination factor protein RarA [Enterococcus faecalis PC1.1]
 gi|307268134|ref|ZP_07549521.1| recombination factor protein RarA [Enterococcus faecalis TX4248]
 gi|307277701|ref|ZP_07558787.1| recombination factor protein RarA [Enterococcus faecalis TX0860]
 gi|307287876|ref|ZP_07567909.1| recombination factor protein RarA [Enterococcus faecalis TX0109]
 gi|307295905|ref|ZP_07575737.1| recombination factor protein RarA [Enterococcus faecalis TX0411]
 gi|312900874|ref|ZP_07760168.1| recombination factor protein RarA [Enterococcus faecalis TX0470]
 gi|312902758|ref|ZP_07761962.1| recombination factor protein RarA [Enterococcus faecalis TX0635]
 gi|312908306|ref|ZP_07767270.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 512]
 gi|312910620|ref|ZP_07769462.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 516]
 gi|227073250|gb|EEI11213.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX0104]
 gi|227175393|gb|EEI56365.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           HH22]
 gi|229309354|gb|EEN75341.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           TX1322]
 gi|255968355|gb|EET98977.1| AAA ATPase [Enterococcus faecalis T2]
 gi|256684159|gb|EEU23854.1| recombination factor protein RarA [Enterococcus faecalis T3]
 gi|256711952|gb|EEU26990.1| recombination factor protein RarA [Enterococcus faecalis T8]
 gi|256952029|gb|EEU68661.1| AAA ATPase [Enterococcus faecalis Merz96]
 gi|256995213|gb|EEU82515.1| AAA ATPase [Enterococcus faecalis D6]
 gi|256999072|gb|EEU85592.1| recombination factor protein rarA [Enterococcus faecalis CH188]
 gi|257161487|gb|EEU91447.1| recombination factor protein rarA [Enterococcus faecalis T11]
 gi|291078015|gb|EFE15379.1| ATPase, AAA family [Enterococcus faecalis R712]
 gi|291083199|gb|EFE20162.1| ATPase, AAA family [Enterococcus faecalis S613]
 gi|294453114|gb|EFG21529.1| recombination factor protein RarA [Enterococcus faecalis PC1.1]
 gi|306496236|gb|EFM65815.1| recombination factor protein RarA [Enterococcus faecalis TX0411]
 gi|306501021|gb|EFM70328.1| recombination factor protein RarA [Enterococcus faecalis TX0109]
 gi|306505580|gb|EFM74764.1| recombination factor protein RarA [Enterococcus faecalis TX0860]
 gi|306515524|gb|EFM84052.1| recombination factor protein RarA [Enterococcus faecalis TX4248]
 gi|310625720|gb|EFQ09003.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 512]
 gi|310633812|gb|EFQ17095.1| recombination factor protein RarA [Enterococcus faecalis TX0635]
 gi|311289168|gb|EFQ67724.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 516]
 gi|311291973|gb|EFQ70529.1| recombination factor protein RarA [Enterococcus faecalis TX0470]
 gi|315025984|gb|EFT37916.1| recombination factor protein RarA [Enterococcus faecalis TX2137]
 gi|315028905|gb|EFT40837.1| recombination factor protein RarA [Enterococcus faecalis TX4000]
 gi|315033296|gb|EFT45228.1| recombination factor protein RarA [Enterococcus faecalis TX0017]
 gi|315143409|gb|EFT87425.1| recombination factor protein RarA [Enterococcus faecalis TX2141]
 gi|315147642|gb|EFT91658.1| recombination factor protein RarA [Enterococcus faecalis TX4244]
 gi|315149228|gb|EFT93244.1| recombination factor protein RarA [Enterococcus faecalis TX0012]
 gi|315163672|gb|EFU07689.1| recombination factor protein RarA [Enterococcus faecalis TX1302]
 gi|315167496|gb|EFU11513.1| recombination factor protein RarA [Enterococcus faecalis TX1341]
 gi|315169388|gb|EFU13405.1| recombination factor protein RarA [Enterococcus faecalis TX1342]
 gi|315574550|gb|EFU86741.1| recombination factor protein RarA [Enterococcus faecalis TX0309B]
 gi|315576689|gb|EFU88880.1| recombination factor protein RarA [Enterococcus faecalis TX0630]
 gi|315581808|gb|EFU93999.1| recombination factor protein RarA [Enterococcus faecalis TX0309A]
 gi|327535494|gb|AEA94328.1| replication-associated recombination protein A [Enterococcus
           faecalis OG1RF]
 gi|329568738|gb|EGG50538.1| ATPase, AAA family [Enterococcus faecalis TX1467]
          Length = 425

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q + R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|224121826|ref|XP_002318682.1| predicted protein [Populus trichocarpa]
 gi|222859355|gb|EEE96902.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 232 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 291

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +      ++M A   P S    
Sbjct: 292 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 349

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 350 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 389



 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 505 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 561


>gi|145544396|ref|XP_001457883.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425701|emb|CAK90486.1| unnamed protein product [Paramecium tetraurelia]
          Length = 426

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 68/184 (36%), Gaps = 39/184 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ +A   + ++++T        L  + I     ++          
Sbjct: 205 PPKGVLMHGPPGTGKTMMARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFQLAQEK 264

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A   P   
Sbjct: 265 APAIIFIDELDAIGTKRYDSDKNGDREVQRTMLELLNQLDGFSPDDRIKVIAATNRPDIL 324

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSL 209
              L  L S RL     ++  LP+++   +++      R++ + K+   Y+ + R     
Sbjct: 325 DPAL--LRSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMSVAKETVNYVEIARSTDEF 378

Query: 210 VFAE 213
             A+
Sbjct: 379 NGAQ 382


>gi|54294651|ref|YP_127066.1| recombination factor protein RarA [Legionella pneumophila str.
           Lens]
 gi|53754483|emb|CAH15967.1| hypothetical protein lpl1728 [Legionella pneumophila str. Lens]
          Length = 434

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 28/182 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G GK+ +A + +        +  A       I       +E       +D Q 
Sbjct: 49  MILWGPPGVGKTTIARLTAQAFDCEWIALSAVFSGVKDIRA----AIEKAQEYLIHDKQT 104

Query: 126 -LF----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q   +LL          + A T   S+ V  P L SR   A V  +
Sbjct: 105 ILFIDEIHRFNKAQQD--ALLPYTESGLITFIGATTENPSFEVN-PALLSR---AQVYVL 158

Query: 171 SLPDDDFLEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            L  +  L+ + +  K  A   +   ++   +++   +        L+++     L+   
Sbjct: 159 KLLSEQELKLLFLRAKQRALSSLQFTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKT 218

Query: 229 GI 230
            +
Sbjct: 219 AV 220


>gi|332975396|gb|EGK12290.1| AAA family ATPase [Desmospora sp. 8437]
          Length = 410

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 26/157 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G+GK+ LA + ++ +++      A       I        E + + D   T L
Sbjct: 55  ILLYGPPGTGKTTLAKVIANTTQARFEQLNAVIAGVAEIRRITQEAKEQLGMYDLR-TLL 113

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDL-CSRLKAATVVKISLP 173
           F    H  N           +  + +L+ A T   S+ V    L  SRL      ++   
Sbjct: 114 FIDEIHRFNKSQQDALLPFVEDGTIILIGATTENPSFEVNSALLSRSRL-----FQLHPL 168

Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQ 203
            ++ L+ +  +   D  R +      ++++   ++V+
Sbjct: 169 TEEELKSLARRALMDEERGLGNFRTQVEEEALDHMVR 205


>gi|327399820|ref|YP_004340689.1| IstB domain-containing protein ATP-binding protein [Hippea maritima
           DSM 10411]
 gi|327182449|gb|AEA34630.1| IstB domain protein ATP-binding protein [Hippea maritima DSM 10411]
          Length = 258

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 23/111 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------SNIAKSLDSI------------LIDT 107
           ++L+GPSG+GK+ LA      +   R        +++A +L++             +I++
Sbjct: 101 ILLIGPSGTGKTHLAIAIGYAAAQHRIKTKFITMADLAITLEAAETQNRLDSYIKKVINS 160

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
            + +++++      N+ Q   LF I+N  ++   S+++T     + W   L
Sbjct: 161 ARLLIIDEFGYFKLNEKQSNLLFQIVNKKYETG-SIIITTNLSFIRWKEVL 210


>gi|294793998|ref|ZP_06759135.1| ATPase, AAA family [Veillonella sp. 3_1_44]
 gi|294455568|gb|EFG23940.1| ATPase, AAA family [Veillonella sp. 3_1_44]
          Length = 433

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 30/157 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++  GP G+GK+ LA I +  S S   +  A +     + T    ++ED      +  
Sbjct: 51  PSMLFYGPCGTGKTTLAGIIAKVSNSYFVNLNATNAGIGELRT----IIEDARKRVRSLQ 106

Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           Q   LF    H  N           +  + +L+ A T    + V  P L SRL+   ++ 
Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199
           +       + +++ +   D       R + +  ++  
Sbjct: 163 LEALTPKAIGQILRRAITDEEVGLGKRHLQVTDEVLE 199


>gi|87303473|ref|ZP_01086256.1| cell division protein [Synechococcus sp. WH 5701]
 gi|87281886|gb|EAQ73849.1| cell division protein [Synechococcus sp. WH 5701]
          Length = 603

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 49/223 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 168 RGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVELFVGVGASRVRDLFKRAKEKAP 227

Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
             + ++++D +           ND       QL   ++   Q    +L+ A   P    V
Sbjct: 228 CIIFIDEVDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEQNSGVILIAATNRPDVLDV 287

Query: 154 CLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L    +R  +    +++ LPD    E ++      R +     L+ +  +    S    
Sbjct: 288 AL----TRPGRFDRQIQVDLPDRRGREAILAVHARSRPLDPSVSLSTWAARTPGFSGADL 343

Query: 213 EKLVDK------------MDNLALSRG-MGITRSLAAEVLKET 242
             L+++            +D+ ALS     IT  LA   L+++
Sbjct: 344 ANLLNEGAILTARRHRSSIDDQALSDALERITMGLAVAPLQDS 386


>gi|258411000|ref|ZP_05681280.1| recombination protein MgsA [Staphylococcus aureus A9763]
 gi|257840150|gb|EEV64614.1| recombination protein MgsA [Staphylococcus aureus A9763]
          Length = 391

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 10  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 69

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 70  RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 118

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 119 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRNALNALELAVLSA 175

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 176 DNDKDGYRHVTLQDAKDCLQK 196


>gi|261364752|ref|ZP_05977635.1| replication-associated recombination protein A [Neisseria mucosa
           ATCC 25996]
 gi|288567056|gb|EFC88616.1| replication-associated recombination protein A [Neisseria mucosa
           ATCC 25996]
          Length = 437

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 23/153 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             D L+K+I K+ A    R   I+      +V 
Sbjct: 163 SSDDLKKLIAKVLALPEYRDFTIEADAQELLVN 195


>gi|194365713|ref|YP_002028323.1| recombination factor protein RarA [Stenotrophomonas maltophilia
           R551-3]
 gi|194348517|gb|ACF51640.1| AAA ATPase central domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 453

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 69/200 (34%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125
           +IL GP G GK+ LA + ++ S +      A S     +   + VL E          T 
Sbjct: 62  MILWGPPGCGKTTLALLLAEYSDAEF---RAISAVLSGLPEVRQVLAEAAQRFAEGRRTV 118

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L    T              L SR +   V++  
Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCR-VHVLEGV 174

Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
            P D  + + + +   DR        I +  +L   I    +  +  A  L++    LA 
Sbjct: 175 SPTD--IVEALERALGDRERGLGEEGIEVAPELLLEIATAADGDVRRALTLLEIAAELAG 232

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 233 GEGGRITPQTLTQVLADRTR 252


>gi|159476808|ref|XP_001696503.1| flagellar associated protein [Chlamydomonas reinhardtii]
 gi|158282728|gb|EDP08480.1| flagellar associated protein [Chlamydomonas reinhardtii]
          Length = 817

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +                   SN+ K       +
Sbjct: 244 PPKGILLYGPPGSGKTLIARAVANETGAFFVVVNGPEIMSKLAGESESNLRKVFQEAEKN 303

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +      +++ A   P S    
Sbjct: 304 APSIIFIDEVDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVIAATNRPNSID-- 361

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + +D+ +
Sbjct: 362 -PALR-RFGRFDREIDIGVPDETGRLEVM--RIHTKNMKLDEDV 401



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D    
Sbjct: 517 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARG 575


>gi|147782460|emb|CAN61919.1| hypothetical protein VITISV_038729 [Vitis vinifera]
          Length = 802

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +      +++ A   P S    
Sbjct: 294 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSID-- 351

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + +   +
Sbjct: 352 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSDDV 391



 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 563


>gi|145596817|ref|YP_001161114.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440]
 gi|145306154|gb|ABP56736.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440]
          Length = 671

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 43/210 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 210 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKTNAPAI 269

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 270 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDTKGGVILIAATNRPDILDPAL 329

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD +  + ++      +    D  L   + +R       A
Sbjct: 330 ------LRPGRFDRQIPVDAPDMEGRKAILRVHAKGKPFTPDVDL-DAVARRTP-GFSGA 381

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             L + ++  AL       R++  + L+E+
Sbjct: 382 -DLANVINEAALLTARRDKRAITDDALEES 410


>gi|257792296|ref|YP_003182902.1| AAA ATPase central domain-containing protein [Eggerthella lenta DSM
           2243]
 gi|317490217|ref|ZP_07948705.1| ATPase [Eggerthella sp. 1_3_56FAA]
 gi|257476193|gb|ACV56513.1| AAA ATPase central domain protein [Eggerthella lenta DSM 2243]
 gi|316910711|gb|EFV32332.1| ATPase [Eggerthella sp. 1_3_56FAA]
          Length = 446

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 24/141 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSI-----LIDTRKPVL 112
           VIL GP+G+GK+ LA++ ++ +++T           S++ + +D+          R  + 
Sbjct: 56  VILFGPAGTGKTSLAHVIAETTKATFVEVSAIGGTVSDLRREIDAADKRLSAFGLRTILF 115

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I   +      L H      +    +L+ A T    + V    L SR   + VV++ 
Sbjct: 116 VDEIHRFNRSQQDALLH----AVEDRVLVLVGATTENPFFEVNSA-LISR---SRVVELH 167

Query: 172 LPDDDFLEKVIVKMFAD-RQI 191
              D+ +  ++ +  AD R +
Sbjct: 168 GLSDEEIVSLVERALADERGL 188


>gi|225024225|ref|ZP_03713417.1| hypothetical protein EIKCOROL_01097 [Eikenella corrodens ATCC
           23834]
 gi|224943250|gb|EEG24459.1| hypothetical protein EIKCOROL_01097 [Eikenella corrodens ATCC
           23834]
          Length = 446

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 23/153 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ V   +I L     T L
Sbjct: 51  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAVNKAEIALQQGRATIL 108

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 109 FVDEVHRFNKAQQ-DAFLPYVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQAL 163

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             D L ++  K+FA    R   +++     ++Q
Sbjct: 164 SADELAQLTAKVFALPEYRSFSLEEDAQKLLIQ 196


>gi|257082202|ref|ZP_05576563.1| recombination factor protein RarA [Enterococcus faecalis E1Sol]
 gi|257416415|ref|ZP_05593409.1| recombination factor protein RarA [Enterococcus faecalis AR01/DG]
 gi|256990232|gb|EEU77534.1| recombination factor protein RarA [Enterococcus faecalis E1Sol]
 gi|257158243|gb|EEU88203.1| recombination factor protein RarA [Enterococcus faecalis ARO1/DG]
          Length = 425

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q + R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|225436524|ref|XP_002276976.1| PREDICTED: similar to Cell division cycle protein 48 homolog [Vitis
           vinifera]
          Length = 802

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                 N+ K+ +    +
Sbjct: 242 PPKGILLYGPPGSGKTLIAKAVANETGAFFFCINGPEIMSKLAGESEGNLRKAFEEAEKN 301

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 302 APSIVFIDEIDSIAPKREKTHGQVEKRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 359

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + +   +
Sbjct: 360 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSDDV 399



 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L +      +  + E  D  
Sbjct: 515 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVREIFDKA 571


>gi|220915883|ref|YP_002491187.1| AAA ATPase central domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953737|gb|ACL64121.1| AAA ATPase central domain protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 437

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 41/203 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS--------------NIAKSLDSILIDTRKP 110
             +IL GP G+GK+ LA I + ++ +                    A      +   R  
Sbjct: 52  PSLILWGPPGTGKTTLARIVAQRTGADFVPFSAVLGGVKEIREIVAAARDRRRMHRKRTI 111

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + +++I          F       +  +  L+ A T   S+ V    L SR     V  +
Sbjct: 112 LFVDEIHRFTRAQQDAFLPH---VEDGTITLIGATTENPSFEVNAA-LLSR---CRVATL 164

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYI---------VQRMERSLVFAEKLVDKMDN 221
               +D +  ++     DR +   + LA  +         + R+  S   A K ++ ++ 
Sbjct: 165 RALTEDEVAALL-----DRAVAAPEGLAGAVALTPEARDTIARL--SYGDARKALNALEV 217

Query: 222 LA----LSRGMGITRSLAAEVLK 240
            A    L+    + ++ A E L+
Sbjct: 218 SAAAVRLAGRPAVEKADAEEALQ 240


>gi|158320754|ref|YP_001513261.1| Holliday junction DNA helicase B [Alkaliphilus oremlandii OhILAs]
 gi|167012665|sp|A8MHI3|RUVB_ALKOO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|158140953|gb|ABW19265.1| Holliday junction DNA helicase RuvB [Alkaliphilus oremlandii
           OhILAs]
          Length = 335

 Score = 45.9 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 29/202 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L+NI +++            ++           L + D+L  ++   
Sbjct: 59  VLLYGPPGLGKTTLSNIIANEMNVNIKITSGPVIERAGDLAAILTNLSENDVLFIDEI-- 116

Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDL--------CSR--LKAAT--- 166
            H IN   +        D +L +     P +  + L DL         +R  L       
Sbjct: 117 -HRINRTVEEVLYPAMEDYALDIIIGKGPSARSIRL-DLPKFTLIGATTRAGLLTGPLRD 174

Query: 167 ----VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
               + K+ L D + L+++I +      ++ID   A  I  R   +   A +L+ ++ + 
Sbjct: 175 RFGVIAKLELYDTEQLKEIIRRSAYILNVYIDDNGAKEIASRSRGTPRIANRLLKRVRDF 234

Query: 223 ALSRG-MGITRSLAAEVLKETQ 243
           A  RG   IT  +A E L+  +
Sbjct: 235 AQVRGDGRITLEIAQEALELLE 256


>gi|256073903|ref|XP_002573267.1| cell division control protein 48 aaa family protein  [Schistosoma
           mansoni]
 gi|238658443|emb|CAZ29499.1| cell division control protein 48 aaa family protein (transitional
           endoplasmic reticulum atpase), putative [Schistosoma
           mansoni]
          Length = 649

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   +++S S  F                SN+ K+ +    +
Sbjct: 80  PPRGILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 139

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 140 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNS---V 196

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    ++I +PD   + ++ +     R I + + +
Sbjct: 197 DPALR-RFGRFDREIEIGIPD--SIGRLEILRIHTRNIRLAEDV 237



 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 353 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKA 409


>gi|227535327|ref|ZP_03965376.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187061|gb|EEI67128.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 423

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 34  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 93

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +    +L+ A T      +  P + SR     + ++     D 
Sbjct: 94  RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPDD 146

Query: 178 LEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +   I +  A       D Q+ +      Y+       L  A   ++
Sbjct: 147 IASAIKRALADHKRGLGDYQVDLQPDALDYLTHATNGDLRSALNGLE 193


>gi|154509637|ref|ZP_02045279.1| hypothetical protein ACTODO_02170 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799271|gb|EDN81691.1| hypothetical protein ACTODO_02170 [Actinomyces odontolyticus ATCC
           17982]
          Length = 563

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 69/183 (37%), Gaps = 27/183 (14%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
            +I++  +     +I  GP G GK+ LA + +  + ++     A +  S + + R+ +  
Sbjct: 47  SMIEADRT---PSMIFWGPPGVGKTTLARVIARHTHASFIDFSAVT--SGIKEIREVMKQ 101

Query: 114 EDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR 161
            D        T +F    H  N           +  S +L+ A T   S+ +    L SR
Sbjct: 102 ADAQASMGRRTIVFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEINNA-LLSR 160

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKL 215
                V  +    ++ L  ++ +   D      R++ I++KL   I    +     A   
Sbjct: 161 ---CKVFVLHGLTEEDLVDLMRRALKDPRGFGGREVRIEEKLLRAIATFADGDARVALST 217

Query: 216 VDK 218
           ++ 
Sbjct: 218 LEM 220


>gi|27544718|dbj|BAC55054.1| DnaA [Mycobacterium phlei]
          Length = 175

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83
             + D  ++ ++   A     +    P+R    + + G SG GK+ L + 
Sbjct: 108 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 157


>gi|329765595|ref|ZP_08257171.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329138033|gb|EGG42293.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 713

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 63/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P   ++L GP G GK+ +A + + +S +  FS                 L  I  + +  
Sbjct: 204 PHSGILLYGPPGCGKTLIAKVLASESEANMFSINGPEIMNKYYGETEAKLRDIFKEAKDN 263

Query: 109 --KPVLLEDIDLLD-FNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    +             L  +++ ++   + +++ A   P S    
Sbjct: 264 SPSIIFIDEIDAIAPKREEAYGDVEKRVVAQLLALMDGLNDRGNVIVLGATNRPESID-- 321

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +     +IS+P++D   ++++     R + +   +
Sbjct: 322 -PALRRPGRFDREFEISVPNEDGRLEILI--IHTRGMPVADDV 361



 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P +  ++ GP G GK+ +A   + ++ +   
Sbjct: 477 PPKGALIYGPPGCGKTLIARALATETGANMI 507


>gi|302333301|gb|ADL23494.1| DNA-directed DNA polymerase III gamma and tau subunits
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 424

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 74/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+   AY   +   S       ++ ++   LS 
Sbjct: 152 NDEDVRQALTRAIEDEEKGLKTYQPKIDEDAMAYFSTQ---SQGDVRSALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229


>gi|255556934|ref|XP_002519500.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
 gi|223541363|gb|EEF42914.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
          Length = 806

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 398



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570


>gi|148268108|ref|YP_001247051.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394176|ref|YP_001316851.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257793701|ref|ZP_05642680.1| recombination protein MgsA [Staphylococcus aureus A9781]
 gi|258446870|ref|ZP_05695024.1| recombination protein MgsA [Staphylococcus aureus A6300]
 gi|258453603|ref|ZP_05701581.1| recombination protein MgsA [Staphylococcus aureus A5937]
 gi|282928261|ref|ZP_06335866.1| ATPase [Staphylococcus aureus A10102]
 gi|295406749|ref|ZP_06816554.1| ATPase [Staphylococcus aureus A8819]
 gi|297245669|ref|ZP_06929534.1| ATPase [Staphylococcus aureus A8796]
 gi|147741177|gb|ABQ49475.1| Recombination protein MgsA [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946628|gb|ABR52564.1| AAA ATPase central domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257787673|gb|EEV26013.1| recombination protein MgsA [Staphylococcus aureus A9781]
 gi|257854445|gb|EEV77394.1| recombination protein MgsA [Staphylococcus aureus A6300]
 gi|257864334|gb|EEV87084.1| recombination protein MgsA [Staphylococcus aureus A5937]
 gi|282590068|gb|EFB95150.1| ATPase [Staphylococcus aureus A10102]
 gi|285817309|gb|ADC37796.1| ATPase related to helicase subunit of the Holliday junction
           resolvase [Staphylococcus aureus 04-02981]
 gi|294968496|gb|EFG44520.1| ATPase [Staphylococcus aureus A8819]
 gi|297177320|gb|EFH36572.1| ATPase [Staphylococcus aureus A8796]
 gi|312830014|emb|CBX34856.1| ATPase family associated with various cellular activities (AAA)
           family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129910|gb|EFT85900.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727592|gb|EGG64048.1| recombination factor protein RarA [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 424

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +   D        Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRNALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229


>gi|116754033|ref|YP_843151.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta
           thermophila PT]
 gi|116665484|gb|ABK14511.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT]
          Length = 756

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 62/168 (36%), Gaps = 43/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G+GK+ LA   +++S +   S                 +    +    +
Sbjct: 240 PPKGILLYGPPGTGKTMLAKAVANESDAYFISVNGPEIMSKYYGESEKALRDIFEEAEKN 299

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + L+++D +                 QL  +++ + +  + L++ +   P +  + 
Sbjct: 300 APAIIFLDELDSIAPKRGEVTGEVERRVVAQLLSLMDGLKERKNVLVIGSTNRPEALDIA 359

Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L      D          +++ +PD +  +++       R + + + +
Sbjct: 360 LRRPGRFD--------REIELGVPDFEGRKEIFQ--IHTRGMPLAEDV 397



 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           ++L GP G+GK+ LA   +++S +   +    +L
Sbjct: 517 ILLYGPPGTGKTMLAKAVANESDANFITAKGSAL 550


>gi|152205934|dbj|BAF73714.1| valosin containing protein [Haemaphysalis longicornis]
          Length = 808

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 44/201 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               +  +++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 297 APSIIFFDELDAIAPKREKTHGEVDRRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDAA 356

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIF--IDKKLAAYIVQRM---ERS 208
           L     R  +    V I +PD     +++     + ++   +D    A    R+    R 
Sbjct: 357 LR----RFGRFDREVDIGIPDATGRLEILRIHTKNMKLAESVDLDKIAAETHRLRVGPRD 412

Query: 209 LVFAEKLVDKMDNLALSRGMG 229
           L             AL +   
Sbjct: 413 LAALCS------EAALQQIRE 427



 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 512 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 568


>gi|84394177|ref|ZP_00992908.1| hypothetical protein V12B01_03078 [Vibrio splendidus 12B01]
 gi|84375197|gb|EAP92113.1| hypothetical protein V12B01_03078 [Vibrio splendidus 12B01]
          Length = 449

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 70/202 (34%), Gaps = 44/202 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + ++ + +   R S +   +  I I   K       +      T
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIEKA----RENKQAGRRT 109

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V K+
Sbjct: 110 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 163

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL------ 224
           +    D +  VI +   D+Q  +    A +    ++R      +LV+    ++L      
Sbjct: 164 TSLHTDDISLVIRQAIEDKQRGLGDVTADFADNVLDR----LAELVNGDARMSLNYLELL 219

Query: 225 --------SRGMGITRSLAAEV 238
                        IT  L AEV
Sbjct: 220 YDMAEDNDKGEKAITLQLLAEV 241


>gi|126174375|ref|YP_001050524.1| recombination factor protein RarA [Shewanella baltica OS155]
 gi|125997580|gb|ABN61655.1| Recombination protein MgsA [Shewanella baltica OS155]
          Length = 443

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 35/196 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +     
Sbjct: 52  MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAKAVAESRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           I     D +  ++ +  +D       RQ  +   +   + Q  +     A  L++ M ++
Sbjct: 162 IKRLSHDEIAHIVTQALSDTERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMGDM 221

Query: 223 ALSRGMGITRSLAAEV 238
            L+ G   T  +  +V
Sbjct: 222 -LADGGTFTTEMLIQV 236


>gi|315426144|dbj|BAJ47789.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum]
          Length = 726

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 42/200 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G GK+ LA   + +S +                     I +        
Sbjct: 487 PPRGVLLYGPPGCGKTLLAKAVATESEANFITIKGPEIFSKWVGESEKAIREIFRKARQA 546

Query: 107 TRKPVLLEDIDLLDFN--------------DTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               +  ++I+ +                  +QL   I+ I + +  +++ A   P    
Sbjct: 547 APAVIFFDEIEAIAPRKDLAEDSSGVTNRVASQLLAEIDGIEELNDIVVIGATNRPDMLD 606

Query: 153 VCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RSL 209
             L  L   R     +  I  PD+    ++       R++ +   +    +  R E  S 
Sbjct: 607 PAL--LRPGRFDRLLL--IPPPDEKARAEIF--YIYTRKMPLADDVNIEVLASRCEGYSG 660

Query: 210 VFAEKLVDKMDNLALSRGMG 229
              E +       AL+    
Sbjct: 661 ADIESVCK---EAALAALRR 677



 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 34/196 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G GK+ LA   + ++ +                   + + +       +
Sbjct: 214 PPKGVLLYGPPGCGKTLLAKAVATEAEANFILINGPEIMNKYYGETEARLREIFRKAEEE 273

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    S +++ A   P +    
Sbjct: 274 APSIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLEGRGSVIVIGATNRPNALD-- 331

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L    +    ++I +PD     +++      R + + K +    +  M R    A  
Sbjct: 332 -PALRRPGRFDREIEIGIPDKKGRVEILT--IHTRGMPLAKDVQVDKLGEMTRGYTGA-D 387

Query: 215 LVDKMDNLALSRGMGI 230
           L       A+     I
Sbjct: 388 LAALCREAAMKAIRRI 403


>gi|255729088|ref|XP_002549469.1| 26S protease regulatory subunit 6A [Candida tropicalis MYA-3404]
 gi|240132538|gb|EER32095.1| 26S protease regulatory subunit 6A [Candida tropicalis MYA-3404]
          Length = 428

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++          
Sbjct: 207 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 266

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A     + 
Sbjct: 267 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 326

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L  L S RL     ++  LP ++  E V+      R++  D     +  + + RS
Sbjct: 327 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLHCDNNSVNW--RELARS 376


>gi|145542851|ref|XP_001457112.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424927|emb|CAK89715.1| unnamed protein product [Paramecium tetraurelia]
          Length = 419

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 68/184 (36%), Gaps = 39/184 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ +A   + ++++T        L  + I     ++          
Sbjct: 205 PPKGVLMHGPPGTGKTMMARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFQLAQEK 264

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A   P   
Sbjct: 265 APAIIFIDELDAIGTKRYDSDKNGDREVQRTMLELLNQLDGFSPDDRIKVIAATNRPDIL 324

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSL 209
              L  L S RL     ++  LP+++   +++      R++ + K+   Y+ + R     
Sbjct: 325 DPAL--LRSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMSVAKETVNYVEIARSTDEF 378

Query: 210 VFAE 213
             A+
Sbjct: 379 NGAQ 382


>gi|3122633|sp|O42586|PR6AB_XENLA RecName: Full=26S protease regulatory subunit 6A-B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT5-B; AltName:
           Full=Proteasome 26S subunit ATPase 3-B; AltName:
           Full=Tat-binding protein 10; Short=TBP-10
 gi|2648045|emb|CAA71486.1| TBP10 protein [Xenopus laevis]
          Length = 404

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEK 243

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q  + + ++ A       
Sbjct: 244 APSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDIL 303

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 304 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 357

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 358 GAQCKAVCVEAGIIALRRGAT 378


>gi|297588494|ref|ZP_06947137.1| crossover junction ATP-dependent DNA helicase RuvB [Finegoldia
           magna ATCC 53516]
 gi|297573867|gb|EFH92588.1| crossover junction ATP-dependent DNA helicase RuvB [Finegoldia
           magna ATCC 53516]
          Length = 335

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 71/210 (33%), Gaps = 53/210 (25%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
            +  +             + P    +L GP G GK+ LA+I +++           +++ 
Sbjct: 45  FIEAAKNR----------NEPLDHALLYGPPGLGKTTLAHIIANEMGVNLRVTSGPAIEK 94

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCL 155
                     L+  D+L  ++    H IN   +        D +L +     P +  + +
Sbjct: 95  PSDLASILTNLQKDDVLFIDEI---HRINRSVEEILYPAMEDYALDIIVGKGPSARSLRI 151

Query: 156 PDL----------CS-------RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK-- 196
            DL           S       R +   ++ + L D + L+K++ +      I ID++  
Sbjct: 152 -DLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIVTRSAGVLGIGIDEEGA 210

Query: 197 ------------LAAYIVQRMERSLVFAEK 214
                       +A  +++R+ R       
Sbjct: 211 MEIARRSRGTPRIANRLLKRV-RDYAEVRA 239


>gi|156937725|ref|YP_001435521.1| ATPase [Ignicoccus hospitalis KIN4/I]
 gi|156566709|gb|ABU82114.1| AAA ATPase, central domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 516

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 56/235 (23%)

Query: 31  SFPRCLGISRDDLLVHS-AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
            FP  LG     L++     + A            + ++LVGP G GK+ L    +    
Sbjct: 258 DFPEELGEELRTLVIDPITNKMAFA---------PKGMLLVGPPGVGKTILVEAVAGGLG 308

Query: 90  S-----------------------TRFSNIAKSLDSILIDTRKPVLLED----IDLLDFN 122
                                     F+ ++K  D +++       L D    +     +
Sbjct: 309 RKLLELEPGMYRSMWYGQTEKILKEIFNAVSKRKDEVVVLIDDAEFLMDRGLAVHEGYVS 368

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--P---DLCSRLKAATVVKISLPDDDF 177
           +  +F  +  +   +  L+      P      L  P   DL         V +  PD +F
Sbjct: 369 EMNVF--LKLLQNRERPLIAMTTNHPQLLDQALVRPGRVDLA--------VIVGYPDKEF 418

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-GIT 231
             K++ +     ++ +D+ L   +V R+ R    AE  +D +  +A ++G   IT
Sbjct: 419 RRKIVERAAKRYELKMDEHLIEKVV-RVTRWFSNAE--IDSLIRMAAAKGKGKIT 470


>gi|323495033|ref|ZP_08100122.1| recombination factor protein RarA [Vibrio brasiliensis LMG 20546]
 gi|323310690|gb|EGA63865.1| recombination factor protein RarA [Vibrio brasiliensis LMG 20546]
          Length = 428

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 36/198 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA + ++ + +                + I K+ +  L   R  + +
Sbjct: 34  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREYKLAGRRTILFV 93

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  +   + A T   S+ +    L SR   A V K++
Sbjct: 94  DEVHRFNKSQQDAFLPHI-----EDGTVTFIGATTENPSFELNNA-LLSR---ARVYKLT 144

Query: 172 LPDDDFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMER--------SLVFAEKLVDKMD 220
               + +   + +   D  R +  ++ +    ++ R+          SL + E L D   
Sbjct: 145 SLAKEDIRLALEQAINDKERGLGAVEVEFVDNVLDRLSELVNGDARMSLNYLELLYDMAQ 204

Query: 221 NLALSRGMGITRSLAAEV 238
             A      IT +L AEV
Sbjct: 205 EDA-QGKKQITLALLAEV 221


>gi|317126379|ref|YP_004100491.1| SARP family transcriptional regulator [Intrasporangium calvum DSM
           43043]
 gi|315590467|gb|ADU49764.1| transcriptional regulator, SARP family [Intrasporangium calvum DSM
           43043]
          Length = 1399

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 66/175 (37%), Gaps = 32/175 (18%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------KSL 100
           E A+R +D      + V+ +VGPSGSGKS L       +      +++          +L
Sbjct: 279 EAALRRLDQ-----TGVLAVVGPSGSGKSSLVRAGVAAALERDGRDVSVLTPGRHPLAAL 333

Query: 101 DSILIDTRKPVLLEDIDLL------DFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWGV 153
           D++       ++++  + +        + +  F  ++    +    L+++ R        
Sbjct: 334 DAVRPQAADVLVVDQCEEVLGLPEESGDRSDFFERLVTFAARPGRQLVISLRAD------ 387

Query: 154 CLPDLC-----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
            L DL      +RL    +  +    +  L + I    A   + I+  L   +V+
Sbjct: 388 RLGDLSIHTDFARLVEQGLYLLGPLREPDLRRAIESPAAQAGLRIEPGLVDLLVR 442


>gi|269837626|ref|YP_003319854.1| IstB domain-containing protein ATP-binding protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786889|gb|ACZ39032.1| IstB domain protein ATP-binding protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 241

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 31/155 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSD--------KSRSTRFSNIAKSLDSILIDTRKP---- 110
           P   + L+G  G GK+ LA   +         ++      ++   L +     +      
Sbjct: 90  PDGWLFLLGGYGCGKTHLAAAVAHYVIAHQRMRALFLVVPDLLDHLRATFAPDQGATYDA 149

Query: 111 ----------VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                     ++L+D+       +   +LF IIN  +      ++T+           P 
Sbjct: 150 RFNAIRTIDLLVLDDLGTEHTTPWAREKLFQIINFRYNERRPTIITSNRNFDELD---PR 206

Query: 158 LCSRL---KAATVVKISLPDDDFLEKVIVKMFADR 189
           + SRL   +    V I   D        ++ F  R
Sbjct: 207 VASRLSDPRICHAVLIPAGDYRVRRASALRRFPGR 241


>gi|255065859|ref|ZP_05317714.1| replication-associated recombination protein A [Neisseria sicca
           ATCC 29256]
 gi|255049770|gb|EET45234.1| replication-associated recombination protein A [Neisseria sicca
           ATCC 29256]
          Length = 437

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 23/153 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             D L+K+I K+ A    R   I+      +V 
Sbjct: 163 SSDDLKKLIAKVLALPEYRDFTIEADAQELLVN 195


>gi|153814369|ref|ZP_01967037.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756]
 gi|317500083|ref|ZP_07958318.1| replication-associated recombination protein A [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087693|ref|ZP_08336619.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848765|gb|EDK25683.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756]
 gi|316898568|gb|EFV20604.1| replication-associated recombination protein A [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330409674|gb|EGG89110.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 438

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 78/205 (38%), Gaps = 43/205 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VI  GP G+GK+ LA + ++ + +            K ++ ++ + +      D+  +  
Sbjct: 55  VIFYGPPGTGKTTLAKVIANTTSAEFKQINATVAGKKDMEEVVKEAK------DMQGMYG 108

Query: 122 NDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + +L+ A T    + V    L SR   + V +
Sbjct: 109 KRTILFIDEIHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGA-LLSR---SAVFE 164

Query: 170 ISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   + + ++ ++ +   D           I+++   ++    + S   A   ++ ++  
Sbjct: 165 LKPLEKEDIKILLRRAVEDEEKGLGSFGAKIEEEALEFLA---DMSGGDARSALNAIELG 221

Query: 223 ALSRGMG------ITRSLAAEVLKE 241
            L+          IT   A+E +++
Sbjct: 222 VLTTERSEDGIIHITLETASECIQK 246


>gi|124027197|ref|YP_001012517.1| ATPases of AAA+ class, SpoVK, putative cell division [Hyperthermus
           butylicus DSM 5456]
 gi|123977891|gb|ABM80172.1| ATPases of AAA+ class, SpoVK, putative cell division [Hyperthermus
           butylicus DSM 5456]
          Length = 737

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + ++L GP G GK+ LA   +++  +   +               + L  I  +  K 
Sbjct: 224 PPKGILLYGPPGVGKTLLAKALANEIGAYFIAINGPEIMSKYYGESEQRLREIFEEAEKN 283

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 284 APSIIFIDEIDAIAPRREEVTGEVEKRVVAQLLTLMDGLKERGRVIVIGATNRPDAID-- 341

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    ++++      R + +   +
Sbjct: 342 -PALRRPGRFDREIEIRPPDKRARKEILQVHV--RNMPLADDV 381



 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 498 PPKGILLFGPPGTGKTLLAKAAATESGANFIA 529


>gi|269798266|ref|YP_003312166.1| ATPase AAA [Veillonella parvula DSM 2008]
 gi|282850504|ref|ZP_06259883.1| recombination factor protein RarA [Veillonella parvula ATCC 17745]
 gi|269094895|gb|ACZ24886.1| AAA ATPase central domain protein [Veillonella parvula DSM 2008]
 gi|282579997|gb|EFB85401.1| recombination factor protein RarA [Veillonella parvula ATCC 17745]
          Length = 433

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 30/157 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++  GP G+GK+ LA I +  S S   +  A +     + T    ++ED      +  
Sbjct: 51  PSMLFYGPCGTGKTTLAGIIAKVSNSHFVNLNATNAGIGELRT----IIEDARKRVRSLQ 106

Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           Q   LF    H  N           +  + +L+ A T    + V  P L SRL+   ++ 
Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199
           +       + +++ +   D       R + +  ++  
Sbjct: 163 LEALTPKAIGQILRRAITDEAVGLGKRHLQVTDEVLE 199


>gi|150403099|ref|YP_001330393.1| AAA family ATPase [Methanococcus maripaludis C7]
 gi|150034129|gb|ABR66242.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C7]
          Length = 800

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 74/191 (38%), Gaps = 38/191 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   ++++ +  +                 N+ K  +    +
Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPELMSKYVGETEENLRKIFEEAEEN 269

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +    ++           QL  +++ +      +++ A   P S  + 
Sbjct: 270 SPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLLDGLEGRGQVVILAATNRPDSIDMA 329

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---KKLAAY---IVQRMERS 208
           L     RL       I +PD     +++     +  +  D    ++      ++   +RS
Sbjct: 330 LRR-PGRLDRELT--IGIPDRHARNEILQIHTRNMPLQPDYEKDEVIPLLNELIGEFDRS 386

Query: 209 -LVFAEKLVDK 218
            +    KLV+K
Sbjct: 387 KIENIVKLVEK 397



 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++S +   S
Sbjct: 556 PPKGVLLFGPPGTGKTLLAKAVANESEANFIS 587


>gi|308389351|gb|ADO31671.1| recombination factor protein RarA [Neisseria meningitidis alpha710]
 gi|325130297|gb|EGC53064.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           OX99.30304]
 gi|325136258|gb|EGC58866.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M0579]
 gi|325202050|gb|ADY97504.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M01-240149]
 gi|325208196|gb|ADZ03648.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           NZ-05/33]
          Length = 436

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R  +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVENGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|284047303|ref|YP_003397643.1| ATPase AAA [Conexibacter woesei DSM 14684]
 gi|283951524|gb|ADB54268.1| AAA ATPase central domain protein [Conexibacter woesei DSM 14684]
          Length = 427

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 68/203 (33%), Gaps = 34/203 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDT 124
           +IL GP G+GK+ LA I +  + +      A  +    +      ++E  +        T
Sbjct: 58  MILYGPPGAGKTTLARIVASSADAVFEELSAVQVGRPEVRA----VIERAEQRRRMGRQT 113

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
             F    H  N           +     L+ A T   S+ V    L SR   A +  +  
Sbjct: 114 IFFLDEIHRFNKAQQDALLPAVEDGRLTLIGATTENPSYEVNGA-LLSR---ARLYALRE 169

Query: 173 PDDDFLEKVIVKMFADRQ---IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGM 228
             +D +  ++ +    R+   + +D      +     RS   A   +  ++     +   
Sbjct: 170 LTEDHVLTLLRRAVERRECGLVSVDDDALELLAA---RSGGDARTALAALELACDTAPES 226

Query: 229 GITR-----SLAAEVLKETQQCD 246
            +T      +L   +L   +  D
Sbjct: 227 KVTLEHAEDALQRRILHYDRASD 249


>gi|237836221|ref|XP_002367408.1| ATPase, AAA family domain containing protein [Toxoplasma gondii
           ME49]
 gi|211965072|gb|EEB00268.1| ATPase, AAA family domain containing protein [Toxoplasma gondii
           ME49]
 gi|221505904|gb|EEE31539.1| werner helicase interacting protein, putative [Toxoplasma gondii
           VEG]
          Length = 1101

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 76/240 (31%), Gaps = 43/240 (17%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL-----VHSAIEQAVRLIDSWPSWPSRV 66
           +P  ++ D  +     +  +       S ++ +     +         L+++        
Sbjct: 587 LPADRRGDPGRRDAVSVPLAERLRPA-SLEEYVGQRGCIQGGRGSIRELLEA---GHLPS 642

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G GK+    I     RS    N A SL   +      V     D+        
Sbjct: 643 LILWGPPGCGKT---TIALLAGRSVGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEAL 699

Query: 126 -----------LF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRL 162
                      LF    H  N   Q          +  L+ A T   S+ V    L SR 
Sbjct: 700 TLRATTKQKTVLFLDEIHRFNKAQQDALLPHVETGTITLIGATTENPSFEVNRA-LLSR- 757

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
               V K+    ++ L  ++ +   +  + I +     I +  +     A + ++ ++N 
Sbjct: 758 --CRVCKLEPLTEEDLTTILQRAAKEENVTITEAAVRVICRLAD---GDARRALNMLENA 812


>gi|152978774|ref|YP_001344403.1| recombination factor protein RarA [Actinobacillus succinogenes
           130Z]
 gi|150840497|gb|ABR74468.1| AAA ATPase central domain protein [Actinobacillus succinogenes
           130Z]
          Length = 447

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA I + +  +                  I ++  + L D +  + +
Sbjct: 53  MILWGPPGTGKTTLAEIIAYRINAEVERLSAVTSGVKDIREAIERAKRNRLADRQTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR +   V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSRTR---VYILK 163

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223
                 +++V+ +  AD  R      + +   L   + + +      A   ++ M ++A 
Sbjct: 164 SLTTADVQRVLQQAVADEERGLGKARLNLQANLLHLLAEYVNGDARLALNCLELMADMAE 223

Query: 224 -LSRGMGITRSLAAEVLKETQQ 244
               G  I R+L  EVL E Q 
Sbjct: 224 EDENGKKIDRTLLTEVLGERQA 245


>gi|74007559|ref|XP_849002.1| PREDICTED: similar to 26S protease regulatory subunit 6A
           (TAT-binding protein 1) (TBP-1) (Spermatogenic
           cell/sperm-associated TAT-binding protein homolog SATA)
           [Canis familiaris]
          Length = 403

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 183 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 242

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D             +      +  ++N +   Q ++ + ++ A       
Sbjct: 243 APSIIFIDELDATGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 302

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 303 DPAL--LRSGRLD--QKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCMDDFN 356

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 357 GAQCKAVCVEAGMIALRRGTT 377


>gi|51244885|ref|YP_064769.1| recombination factor protein RarA [Desulfotalea psychrophila LSv54]
 gi|50875922|emb|CAG35762.1| probable uncharacterized ATPase related to the helicase subunit of
           the Holliday junction resolvase [Desulfotalea
           psychrophila LSv54]
          Length = 440

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 70/173 (40%), Gaps = 26/173 (15%)

Query: 67  VILVGPSGSGK--------SCLANIWSDKSR-----STRFSNIAKSLDSILIDTRKPVL- 112
            IL GP G+GK        +   +I++  S      +   + + ++   +  + +K ++ 
Sbjct: 56  FILWGPPGTGKTTIARFIETHTKHIFASLSAVLTKIAEVKALMEQARFRLQAEGQKTLVF 115

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++I   + +    F       +  + +L+ A T   S+ V    L SR     V  +  
Sbjct: 116 VDEIHRFNKSQQDAFLPY---VESGAIVLLGATTENPSFEVISA-LLSR---CHVFTLQP 168

Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + ++ ++ +   +  R+I I  +    +    E+S     K ++ ++ +A
Sbjct: 169 LSIEDIKSIMTRALKEIPREIHISDQALTMLA---EKSGGDGRKALNHLETVA 218


>gi|332796313|ref|YP_004457813.1| AAA ATPase [Acidianus hospitalis W1]
 gi|332694048|gb|AEE93515.1| AAA family ATPase, CDC48 subfamily [Acidianus hospitalis W1]
          Length = 767

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 78/201 (38%), Gaps = 49/201 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + V+L GP G+GK+ LA   ++++ +              +    + L  I  D +K 
Sbjct: 223 PPKGVLLYGPPGTGKTLLAKAVANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 282

Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFP------ 148
               + +++ID +    ++           QL  +++ +    + +++ A   P      
Sbjct: 283 APAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLESRGNVIVIAATNRPNAVDPA 342

Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       + LPD   RL+   +++I   +    + V + K+      +    LAA
Sbjct: 343 LRRPGRFDREIEIPLPDKQGRLE---ILQIHTRNMPLAKDVDLEKLAEVTHGYTGADLAA 399

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
             + R E ++    + + K+D
Sbjct: 400 --LVR-EAAMNALRRYLPKID 417



 Score = 37.8 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 496 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 527


>gi|312384050|gb|EFR28872.1| hypothetical protein AND_02653 [Anopheles darlingi]
          Length = 580

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 32/175 (18%)

Query: 41  DDLL----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----SRSTR 92
           +D +    V        +L D   S     +IL GP G GK+ LA+I +++    S S R
Sbjct: 168 EDYVGQEQVMGRNAILRKLFD---SGSIPSMILWGPPGCGKTTLAHIIANRCKQNSNSMR 224

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSL 140
           F +++ +   +  D ++ V +   +      T LF    H  N +         +  +  
Sbjct: 225 FVSLSATSAGVN-DVKEAVKVAKNESRFKRRTILFLDEIHRFNKLQQDIFLPHVESGTIT 283

Query: 141 LM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
           L+  T      S       L SR     V+ +     + +  ++V+     +  +
Sbjct: 284 LIGATTENPSFSLNSA---LLSR---CRVIVLEKHSVESMMSILVRALPQYRAKL 332


>gi|268319502|ref|YP_003293158.1| recombination factor protein RarA [Lactobacillus johnsonii FI9785]
 gi|262397877|emb|CAX66891.1| recombination factor protein RarA [Lactobacillus johnsonii FI9785]
          Length = 420

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 29/170 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID---------TRKPVLLEDID 117
           ++L GP G+GK+ LA I + +      +    S D+                 +L+++I 
Sbjct: 44  LLLWGPPGTGKTSLAQIIAREYD-YPLATFNASTDNKAKLMQIINTYPYQSFVLLIDEIH 102

Query: 118 L--LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
                  D  L ++ N        LL+ A T      +  P + SR     + +     D
Sbjct: 103 RMTTTLQDYLLPYLEN-----GQILLIGATTENPIMSIV-PAVRSR---CQIFEFKALSD 153

Query: 176 DFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             +E+V+++        A++QI  DK+    I +  +  L  A  L++ +
Sbjct: 154 HDIEQVLIRALKEVFNLAEKQI--DKEAINIIARSADGDLRVALNLLETI 201


>gi|238020918|ref|ZP_04601344.1| hypothetical protein GCWU000324_00815 [Kingella oralis ATCC 51147]
 gi|237867898|gb|EEP68904.1| hypothetical protein GCWU000324_00815 [Kingella oralis ATCC 51147]
          Length = 436

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 27/189 (14%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            AV L    P      +IL G +G GK+ LA I +    +      A    S + D R+ 
Sbjct: 38  LAVALASGEPH----SMILWGSAGIGKTTLARIVAQGFDAQFLPISAVF--SGVKDIREA 91

Query: 111 VLLEDIDLLDFNDTQLF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPD 157
           +   ++       T LF    H  N   Q D+ L      L+T   A T   S+ V    
Sbjct: 92  ITQAEMAWQRGKRTILFVDEVHRFNKAQQ-DAFLPHVESGLITFIGATTENPSFEVNAA- 149

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFA---DRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L SR   A V  +   + + L ++  K+F    + QI I  +    I+Q  +        
Sbjct: 150 LLSR---AQVYTLKPLNPEALAQLCDKVFRLPENAQIRITPEAQQLIIQHADGDARRLLN 206

Query: 215 LVDKMDNLA 223
            ++++   A
Sbjct: 207 TLEQIIRAA 215


>gi|213405279|ref|XP_002173411.1| DNA-dependent ATPase MGS1 [Schizosaccharomyces japonicus yFS275]
 gi|212001458|gb|EEB07118.1| DNA-dependent ATPase MGS1 [Schizosaccharomyces japonicus yFS275]
          Length = 514

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 30/181 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL-----DSILIDTR 108
            LI+         +IL G SG GK+ LA I +  + +      A S        I  +++
Sbjct: 116 NLIERDEC---PSMILWGNSGVGKTTLARIIAKTTGAHFLEVSATSASVSDCRKIFEESQ 172

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL------LMTARTFPVSWGVCLPDLCSRL 162
             + L     + F D    H  N   Q D  L      L+T              L SR 
Sbjct: 173 NLLRLTGKKTIVFLDEV--HRFNRAQQ-DIFLPMVEKGLIT-LNPSFRLNSA---LLSR- 224

Query: 163 KAATVVKISLPDDD-----FLEKV-IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
              +V   ++ D D         + I     +R++ +D+ +  +I    +     A   +
Sbjct: 225 --CSVFTFNVLDKDNVLSILRRAMQIESERKERKLELDESILQHISAICDGDARVALNCL 282

Query: 217 D 217
           +
Sbjct: 283 E 283


>gi|108799292|ref|YP_639489.1| recombination factor protein RarA [Mycobacterium sp. MCS]
 gi|119868408|ref|YP_938360.1| recombination factor protein RarA [Mycobacterium sp. KMS]
 gi|108769711|gb|ABG08433.1| Recombination protein MgsA [Mycobacterium sp. MCS]
 gi|119694497|gb|ABL91570.1| Recombination protein MgsA [Mycobacterium sp. KMS]
          Length = 445

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 27/156 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
           VIL GP G+GK+ LA++ S  +          S   K + +++   R+ +L        +
Sbjct: 62  VILYGPPGTGKTTLASLISHATGRRFEALSALSAGVKEVRAVIETARQGILRGQQTVLFI 121

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +    LL+ A T   S+ V  P L SR   + ++++  
Sbjct: 122 DEVHRFSKTQQDALL----AAVENRIVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 173

Query: 173 PDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQ 203
              D + +V+ +  AD R +     +       IVQ
Sbjct: 174 LAPDSITEVVRRAVADPRGLADSVDVSDDAVDLIVQ 209


>gi|77919922|ref|YP_357737.1| recombination factor protein RarA [Pelobacter carbinolicus DSM
           2380]
 gi|77546005|gb|ABA89567.1| Recombination protein MgsA [Pelobacter carbinolicus DSM 2380]
          Length = 432

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP------------VL 112
           VI  GP G+GK+ +A + +   +SR   FS + + +  +    +K             + 
Sbjct: 53  VIFWGPPGTGKTTMAQVIAGSTRSRFVFFSAVLQGIKEVREIVKKAREERAYHNRKTLLF 112

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++I   +      F       +     L+ A T   S+ +    L SR   + V  +  
Sbjct: 113 VDEIHRFNKAQQDAFLPY---VEKGDITLIGATTENPSFEINSA-LLSR---SRVFVLQP 165

Query: 173 PDDDFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL-- 224
            D   + +++ +   D R +       D +  A++  + +     A   ++ ++  A   
Sbjct: 166 LDAADIAQLLQRALTDSRGLDNKFPETDSETLAFLAGQAQ---GDARVALNALEVAADLS 222

Query: 225 SRGMGITRSLAAEVLKE 241
                IT     + L++
Sbjct: 223 KEQRAITLQAVKDALQQ 239


>gi|260061886|ref|YP_003194966.1| recombination factor protein RarA [Robiginitalea biformata
           HTCC2501]
 gi|88786019|gb|EAR17188.1| putative ATPase, AAA family protein [Robiginitalea biformata
           HTCC2501]
          Length = 427

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 78/209 (37%), Gaps = 28/209 (13%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA--------------KS 99
            L     +     +I  GP G+GK+ LA+I +++S    F+  A                
Sbjct: 29  ALTRQIANGTVPSMIFWGPPGTGKTTLAHIIAEESGRPFFTLSAINSGVKDVREVIEKAR 88

Query: 100 LDSILIDTRKPVL-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
               L  TR P+L +++I     +    L     +  +     L+ A T   S+ V +P 
Sbjct: 89  QGGGLFTTRNPILFIDEIHRFSKSQQDSLL----AAVEKGWVTLIGATTENPSFEV-IPA 143

Query: 158 LCSRLKAATVVKISLPD-DDFLEKVIVKMFADRQI---FIDKKLAAYIVQRMERSLVFAE 213
           L SR     V  +     +D L+ +   M +D Q+    I  +    +++          
Sbjct: 144 LLSR---CQVYTLESFGKEDLLKLLERAMASDSQLQSREIKLEETDALLRLSGGDGRKLL 200

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            + + + + +    + IT  +  ++++  
Sbjct: 201 NIFELVVSASPEDPVRITDKMVTDLVQNQ 229


>gi|225419780|ref|ZP_03762083.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme
           DSM 15981]
 gi|225041584|gb|EEG51830.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme
           DSM 15981]
          Length = 449

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 67/174 (38%), Gaps = 23/174 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111
             +I  GP G GK+ LA+I + ++ +   +              +A++     +  R  V
Sbjct: 60  PSMIFWGPPGVGKTTLASIIAKRTHAEFINFSAVTSGIKEIKEVMARAEQGRRMGKRTVV 119

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            +++I   +      F       +  S +L+ A T   S+ +    L SR     V  + 
Sbjct: 120 FVDEIHRFNKAQQDAFLPY---VEKGSIILIGATTENPSFEINAA-LLSR---CRVFVLQ 172

Query: 172 LPDDDFLEKVIVKMFAD-RQI-FIDKKLAAYIVQRMER-SLVFAEKLVDKMDNL 222
              ++ L +++       R   +++  ++  ++  + R S   A   ++ ++  
Sbjct: 173 GLGEEDLTRLLKNALQSPRGFGYLNVDISDAMLGAIARFSGGDARTALNILEMA 226


>gi|193212227|ref|YP_001998180.1| Holliday junction DNA helicase RuvB [Chlorobaculum parvum NCIB
           8327]
 gi|238692619|sp|B3QM27|RUVB_CHLP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|193085704|gb|ACF10980.1| Holliday junction DNA helicase RuvB [Chlorobaculum parvum NCIB
           8327]
          Length = 342

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 81/200 (40%), Gaps = 25/200 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDL 118
           V+L GP G GK+ LA+I + +             + A +L  +L  +     + +++I  
Sbjct: 56  VLLSGPPGLGKTTLAHIIAAEMGGGIKITSGPLIDKAGNLAGLLTSLKKGDILFIDEIHR 115

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCSRLKA-- 164
           L     +  ++ +++  Y   +L+ +     +  + L              L S L+A  
Sbjct: 116 LAPAVEE--YLYSAMEDYRIDILLDSGPASRAVQLKLEPFTLVGATTRSGLLTSPLRARF 173

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223
               ++     + L+ +IV+      I +D+  A  I +R   +   A +L+ +  D   
Sbjct: 174 GINSRLDYYSPELLQSIIVRAAGILNIGVDEDAAMEIARRSRGTPRIANRLLRRARDFAQ 233

Query: 224 LSRGMGITRSLAAEVLKETQ 243
           ++    I+ ++A   L+  +
Sbjct: 234 VANEASISLAVARRTLESLE 253


>gi|288555372|ref|YP_003427307.1| recombination factor protein RarA [Bacillus pseudofirmus OF4]
 gi|288546532|gb|ADC50415.1| recombination factor protein RarA, AAA ATPase [Bacillus
           pseudofirmus OF4]
          Length = 422

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 27/169 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS---------TRFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  + +             ++  ++    +  +  V+L+++ 
Sbjct: 43  MILYGPPGVGKTSIATAIAGSTDTPFKLLNAVVHNKKDMEIAVAEAKMHGQLIVILDEVH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL--P 173
            L     D  L H+     +    +L+ A T      +  P + SR     + ++    P
Sbjct: 103 RLDKAKQDFLLPHL-----EKGLIILIGATTANPYHSIN-PAIRSR---CQIFELESLTP 153

Query: 174 DD---DFLEKVI--VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           DD     +  +      F   QI +++   +++       +  A   ++
Sbjct: 154 DDIKTALIRAIQNPESGFGKEQIEMEEDAISHLAHMCGGDVRSALNALE 202


>gi|290973999|ref|XP_002669734.1| predicted protein [Naegleria gruberi]
 gi|284083285|gb|EFC36990.1| predicted protein [Naegleria gruberi]
          Length = 428

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++++T        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|260819040|ref|XP_002604690.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae]
 gi|229290018|gb|EEN60701.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae]
          Length = 449

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 41/163 (25%)

Query: 65  RVVILVGPSGSGKSCLANIW---SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
             ++L GP G GK+ +A I    + + +++RF  ++ ++  +         + D+  +  
Sbjct: 52  PSMVLWGPPGCGKTTMAQIIAKNAKQHQNSRFVALSATMSGVDE-------VRDVIKVAK 104

Query: 122 NDTQLF-----------HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCS 160
           N+  +F           H  N           +  + +L+  T      S       L S
Sbjct: 105 NEQTMFRRKTILFIDEIHRFNKKQQDTFLPHVESGTIVLIGATTENPSFSLNSA---LLS 161

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           R +   + K+ + D +     I++  A     I      ++  
Sbjct: 162 RCRVIVLEKLGVEDVEL----ILRRAAH---AIGDMTLLFLCN 197


>gi|91782394|ref|YP_557600.1| recombination factor protein RarA [Burkholderia xenovorans LB400]
 gi|296162243|ref|ZP_06845038.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
 gi|91686348|gb|ABE29548.1| Recombination protein MgsA [Burkholderia xenovorans LB400]
 gi|295887510|gb|EFG67333.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1]
          Length = 437

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 20/189 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +D   +   +    ++ S + D R+ V    I   + + T +
Sbjct: 48  MILWGPPGVGKTTLARLMADAFHAEFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 105

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +    + + A T   S+ V    L SR   A V  +    
Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLT 161

Query: 175 DDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITR 232
           D+   +++ +   +   +    +    ++   +         ++ +   A  +    I  
Sbjct: 162 DEEQRELLERAQKELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKTTEIDG 221

Query: 233 SLAAEVLKE 241
           +L    L E
Sbjct: 222 ALLGSALAE 230


>gi|269926092|ref|YP_003322715.1| AAA ATPase central domain protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789752|gb|ACZ41893.1| AAA ATPase central domain protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 423

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 34/200 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G+GK+ LA   ++ + S      A S+    +      ++E    L  N  
Sbjct: 55  PSIILWGPPGTGKTSLAMAIAETTSSNFVHLSAVSVGVPELRR----VIESAIRLKRNLR 110

Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           +   +F    H  N           +  S  L+ A T   S+ V    L SR     V  
Sbjct: 111 KRTIVFLDEIHRFNKAQQDAVLPHVENGSITLIGATTENPSFEVNSA-LLSR---CRVYV 166

Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           ++   ++ ++ ++ +   D  R      + +D     ++    + +   A   +  ++  
Sbjct: 167 LNPLSEEHIKLILKRAIEDKERGLGSYALQVDDVALEFLA---DLANGDARIALTALEMA 223

Query: 223 A-LSRGMGITRSLAAEVLKE 241
           A ++    I   L  EV++ 
Sbjct: 224 ARVANDGHIDVDLIREVVQR 243


>gi|70731237|ref|YP_260978.1| recombination factor protein RarA [Pseudomonas fluorescens Pf-5]
 gi|68345536|gb|AAY93142.1| ATPase, AAA family [Pseudomonas fluorescens Pf-5]
          Length = 441

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + ++ S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAEVSDAH-FETVSAVLAGVKEIRQAVEIAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L  ++ +   +      RQ+ +  +    ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALGTLVQRALTEERGLGKRQLSLSDEGFQMLLSAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I+  L   +L +T++
Sbjct: 210 NLLENASDLAEDGGEISVDLLQSLLGDTRR 239


>gi|302380554|ref|ZP_07269019.1| Holliday junction DNA helicase RuvB [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233656|ref|ZP_07320310.1| Holliday junction DNA helicase RuvB [Finegoldia magna BVS033A4]
 gi|302311497|gb|EFK93513.1| Holliday junction DNA helicase RuvB [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495090|gb|EFL54842.1| Holliday junction DNA helicase RuvB [Finegoldia magna BVS033A4]
          Length = 335

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 71/210 (33%), Gaps = 53/210 (25%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
            +  +             + P    +L GP G GK+ LA+I +++           +++ 
Sbjct: 45  FIEAAKNR----------NEPLDHALLYGPPGLGKTTLAHIIANEMGVNLRVTSGPAIEK 94

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCL 155
                     L+  D+L  ++    H IN   +        D +L +     P +  + +
Sbjct: 95  PSDLASILTNLQKDDVLFIDEI---HRINRSVEEILYPAMEDYALDIIVGKGPSARSLRI 151

Query: 156 PDL----------CS-------RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK-- 196
            DL           S       R +   ++ + L D + L+K++ +      I ID++  
Sbjct: 152 -DLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIVTRSAGVLGIGIDEEGA 210

Query: 197 ------------LAAYIVQRMERSLVFAEK 214
                       +A  +++R+ R       
Sbjct: 211 MEIARRSRGTPRIANRLLKRV-RDYAEVRA 239


>gi|145538063|ref|XP_001454737.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422514|emb|CAK87340.1| unnamed protein product [Paramecium tetraurelia]
          Length = 426

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 68/184 (36%), Gaps = 39/184 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ +A   + ++++T        L  + I     ++          
Sbjct: 205 PPKGVLMHGPPGTGKTMMARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFQLAQEK 264

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A   P   
Sbjct: 265 APAIIFIDELDAIGTKRYDSDKNGDREVQRTMLELLNQLDGFSPDDRIKVIAATNRPDIL 324

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSL 209
              L  L S RL     ++  LP+++   +++      R++ + K+   Y+ + R     
Sbjct: 325 DPAL--LRSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMSVAKETVNYVEIARSTDEF 378

Query: 210 VFAE 213
             A+
Sbjct: 379 NGAQ 382


>gi|45643125|ref|NP_996671.1| nuclear valosin-containing protein-like isoform 2 [Homo sapiens]
 gi|2406580|gb|AAB70460.1| nuclear VCP-like protein NVLp.1 [Homo sapiens]
 gi|119590122|gb|EAW69716.1| nuclear VCP-like, isoform CRA_c [Homo sapiens]
          Length = 750

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 191 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 250

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 251 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 310

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 311 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 350


>gi|303246593|ref|ZP_07332871.1| AAA ATPase central domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491933|gb|EFL51811.1| AAA ATPase central domain protein [Desulfovibrio fructosovorans JJ]
          Length = 408

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 11/136 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI--LIDTRKPVLLEDIDLLD 120
             ++  GP G GKS LA I +        R S     L ++  LI  ++ ++L+++    
Sbjct: 43  PSLLFFGPPGCGKSTLALILARAKERPYVRVSAPEAGLAALRELIKGKEILILDELHRFS 102

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                 F     + +    +L+   T   S+ V    L SRL    V ++       L  
Sbjct: 103 KAQQDFFLP---LLETGEIVLLATTTENPSFSVTRQ-LLSRL---HVFRLRPLSQAELLV 155

Query: 181 VIVKMFADRQIFIDKK 196
           +  +   +  + +  +
Sbjct: 156 LAERGAKEAGMELAPE 171


>gi|319638052|ref|ZP_07992816.1| hypothetical protein HMPREF0604_00439 [Neisseria mucosa C102]
 gi|317400697|gb|EFV81354.1| hypothetical protein HMPREF0604_00439 [Neisseria mucosa C102]
          Length = 435

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIEKAEIALQQGQATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|302424037|ref|XP_003009845.1| cell division cycle protein [Verticillium albo-atrum VaMs.102]
 gi|261361679|gb|EEY24107.1| cell division cycle protein [Verticillium albo-atrum VaMs.102]
          Length = 634

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 252 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 369

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 370 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 409


>gi|260175364|ref|ZP_05761776.1| cell division protein CDC48 [Bacteroides sp. D2]
 gi|315923595|ref|ZP_07919835.1| holliday junction DNA helicase [Bacteroides sp. D2]
 gi|313697470|gb|EFS34305.1| holliday junction DNA helicase [Bacteroides sp. D2]
          Length = 594

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 59/216 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKS------------RSTRFSNIAKSLDSILIDTRK- 109
           P+  + L GP G GK+ +A  ++ +S             S     +   +  +  +  K 
Sbjct: 356 PNGTL-LYGPPGCGKTYIAEKFAQESGLNFMMVKASDLGSIYIHGMQGKIAELFDEAEKK 414

Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTF----PVS 150
               +  ++ D +  +              +    +N+  +    ++ T+       P  
Sbjct: 415 APTVICFDEFDAMVPDRSRMDNVGQSGEVNEFLSQLNNCAERGIFVIGTSNRPDRIDPAV 474

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF-------IDKKLAAYIVQ 203
                 D         ++ I LPD +  + + V    DR          +  K A Y+  
Sbjct: 475 LRTGRID--------KLIYIPLPDKEARKSLFVFQLRDRWCEETIDCEILADKTAGYVA- 525

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
                      +V   +  AL+  M     ++ E+L
Sbjct: 526 ------SDITFIV---NETALAAAMK-DIPISQELL 551


>gi|68481174|ref|XP_715502.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida
           albicans SC5314]
 gi|68481315|ref|XP_715432.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida
           albicans SC5314]
 gi|46437054|gb|EAK96407.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida
           albicans SC5314]
 gi|46437126|gb|EAK96478.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida
           albicans SC5314]
          Length = 454

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++          
Sbjct: 233 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 292

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A     + 
Sbjct: 293 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 352

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L  L S RL     ++  LP ++  E V+      R++  D     +  + + RS
Sbjct: 353 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLHCDNNSVNW--RELARS 402


>gi|320536521|ref|ZP_08036549.1| hypothetical protein HMPREF9554_01280 [Treponema phagedenis F0421]
 gi|320146630|gb|EFW38218.1| hypothetical protein HMPREF9554_01280 [Treponema phagedenis F0421]
          Length = 259

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97
              + +V    + A   + S+   P+   ++L+G +G+GK+ LA+     +    F +  
Sbjct: 89  GFKNFVVDEKNKTARDSVLSFAKNPNNKWLLLLGKNGTGKTHLAHAVLKLTGG-IFRDFD 147

Query: 98  KSLDSILIDTRK 109
                +L     
Sbjct: 148 DVSTDLLDAQAG 159


>gi|269213974|ref|ZP_06158287.1| replication-associated recombination protein A [Neisseria cinerea
           ATCC 14685]
 gi|269144864|gb|EEZ71282.1| replication-associated recombination protein A [Neisseria cinerea
           ATCC 14685]
          Length = 387

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 1   MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 58

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 59  FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 113

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 114 SSDDLKKLIAKVLA 127


>gi|15616562|ref|NP_244868.1| transposase (27) [Bacillus halodurans C-125]
 gi|10176625|dbj|BAB07719.1| transposase (27) [Bacillus halodurans C-125]
          Length = 261

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GP G GK+ +A     ++    F     ++  ++                  I   
Sbjct: 111 LILLGPPGIGKTYIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 170

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             V+++D+  +  +  +    FH+IN +++  SS+++T+   P  WG  + D
Sbjct: 171 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 221


>gi|84496693|ref|ZP_00995547.1| conserved ATP/GTP binding protein [Janibacter sp. HTCC2649]
 gi|84383461|gb|EAP99342.1| conserved ATP/GTP binding protein [Janibacter sp. HTCC2649]
          Length = 457

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 25/174 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            IL GP G+GK+ LA++ +  +        A +     +         + DL D   T L
Sbjct: 64  AILWGPPGTGKTTLAHLVATAANREFVELSAVTAGVKDVRAVMEAAARNRDLYD-RQTVL 122

Query: 127 F----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H      Q            +L+ A T   S+ V  P L SR   + ++ ++  D
Sbjct: 123 FLDEIHRFTKAQQDALLPGVETRQVILVAATTENPSFSVIAP-LLSR---SMLITLTSLD 178

Query: 175 DDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           D  + +V+     D R +     +  +   ++V R+  S   A + +  ++  A
Sbjct: 179 DAQVAEVLDSAVTDARGLDAAYALSSEAREHLV-RI--SGGDARRALTSLEAAA 229


>gi|328351596|emb|CCA37995.1| Uncharacterized AAA domain-containing protein C26H5.02c [Pichia
           pastoris CBS 7435]
          Length = 863

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDS---ILIDTRKPVLLEDIDLL 119
             +IL GP G GK+ LA I +  +  R    S  +  +     +  + R  +       L
Sbjct: 469 PSMILWGPPGVGKTSLARIIAASTHNRCVELSATSSGISECRKVFEEARNEM------RL 522

Query: 120 DFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAA 165
               T LF    H  N           +    +L+  T              L SR    
Sbjct: 523 TKRRTVLFCDEIHRFNKSQQDAFLPYVERGDIILIGATTENPSFQLNSA---LLSR---C 576

Query: 166 TVVKISLPDDDFLEKVIVKMF----ADRQIF-------IDKKLAAYIVQRMERSLVFAEK 214
            V  ++  D++ L KV+ +        R++        +  +   YI+         A  
Sbjct: 577 RVFVLNKLDNEDLAKVVNRSLLLVNRVRKLVYNMPVLRLTTESLQYIIGVAGGDSRTALN 636

Query: 215 LVDKMD 220
           LV+ +D
Sbjct: 637 LVEMVD 642


>gi|296139682|ref|YP_003646925.1| ATPase AAA [Tsukamurella paurometabola DSM 20162]
 gi|296027816|gb|ADG78586.1| AAA ATPase central domain protein [Tsukamurella paurometabola DSM
           20162]
          Length = 456

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 23/170 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G+GK+ +A++ S  +          S   K + +++   R+ +L+++  +L  
Sbjct: 73  VILYGPPGTGKTTIASLISGATGRRFEALSALSAGVKDVRAVIEMARRRLLVDEQTVLFI 132

Query: 122 NDTQLF-----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
           ++   F       + +  +    LL+ A T   S+ V  P L SR   + ++++   +  
Sbjct: 133 DEVHRFSKAQQDALLAAVENRVVLLVAATTENPSFSVVSP-LLSR---SLILQLRPLEPG 188

Query: 177 FLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ----RMERSLVFAEKLVD 217
            + ++I +   D R     + I  +   ++V+       RSL   E   D
Sbjct: 189 HISELIDRALTDPRGYDGALTITDEARDHLVRLAGGDARRSLTALEAAAD 238


>gi|255556938|ref|XP_002519502.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
 gi|223541365|gb|EEF42916.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
           communis]
          Length = 805

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 398



 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570


>gi|229828714|ref|ZP_04454783.1| hypothetical protein GCWU000342_00780 [Shuttleworthia satelles DSM
           14600]
 gi|229793308|gb|EEP29422.1| hypothetical protein GCWU000342_00780 [Shuttleworthia satelles DSM
           14600]
          Length = 447

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           VI  GP G+GK+ LA + ++ + +   + +        +          +D   +    T
Sbjct: 55  VIFYGPPGTGKTTLARVIANTTSADFRQINATTAGKKDMQEAVEAA---KDTLGMYGKKT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V    L SR   + + ++  
Sbjct: 112 ILFIDEIHRFNKGQQDYLLPYVEDGTVILIGATTENPYFEVNGA-LLSR---SVIFELKP 167

Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIV 202
              + + K++++  +DR          I +    ++ 
Sbjct: 168 LSQENIRKLLLRAISDREKGMGSYGAVIAEDALDFLA 204


>gi|254168540|ref|ZP_04875384.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197622595|gb|EDY35166.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 727

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   ++++ +                    N+ +       +
Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIYLSGPEIMSKFYGQSEENLREIFKEAQDN 274

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 275 APSIIFIDEIDSIAPKRDEVSGEVERRVVAQLLALMDGLESRGKVVVIGATNRPNALD-- 332

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +P  +  ++++      R + + + +
Sbjct: 333 -PALRRPGRFDREIEIGIPGKNARKEILE--IHTRGVPLAEDV 372



 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 16/70 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           ++L GP G+GK+ LA   + +S +   S                 + +            
Sbjct: 492 ILLYGPPGTGKTLLAKAVATESEANFISVKGPEFLSKWVGESEKAVREVFRKARQAAPAV 551

Query: 111 VLLEDIDLLD 120
           + +++ID + 
Sbjct: 552 IFIDEIDAIA 561


>gi|27544716|dbj|BAC55053.1| DnaA [Mycobacterium parafortuitum]
          Length = 179

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI 83
             + +  ++ ++   A      I   P+     + + G SG GK+ L + 
Sbjct: 112 RYTFETFVIGASNRFAHAASLAIAEAPARAYNPLFIWGESGLGKTHLLHA 161


>gi|308276523|gb|ADO26422.1| Replication-associated recombination protein A [Corynebacterium
           pseudotuberculosis I19]
          Length = 456

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 30/176 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           VIL GP G+GK+ +A++ S  +                  + I ++  S++   R  + +
Sbjct: 75  VILYGPPGTGKTTIASLISTATGHHFVGLSALNSGVKEVRAVIDEARRSLIHGKRTVLFI 134

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +  + LL+ A T   S+ V  P L SR   + V+++  
Sbjct: 135 DEVHRFSKTQQDALL----AAVENRTVLLVAATTENPSFSVVSP-LLSR---SLVLQLQP 186

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            D   +++V+ +   D R +     +  +    +V         A + +  ++  A
Sbjct: 187 LDSGAIKEVLQRAIVDSRGLGSRIHVTDEALEQLVLLAG---GDARRALTYLEAAA 239


>gi|297816624|ref|XP_002876195.1| hypothetical protein ARALYDRAFT_485698 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322033|gb|EFH52454.1| hypothetical protein ARALYDRAFT_485698 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 810

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +      ++M A   P S    
Sbjct: 301 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 359 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 398



 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 570


>gi|295675840|ref|YP_003604364.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002]
 gi|295435683|gb|ADG14853.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002]
          Length = 437

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 20/189 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +D   +   +    ++ S + D R+ V    I   + + T +
Sbjct: 48  MILWGPPGVGKTTLARLMADAFDAQFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 105

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +    + + A T   S+ V    L SR   A V  +    
Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLT 161

Query: 175 DDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITR 232
           DD   +++ +   +   +    +    ++   +         ++ +   A  +    I  
Sbjct: 162 DDEQRELLERAQKELGGLTFTDEARTALIGSADGDGRKLLNNLEIVARAAAQQKTTEIDG 221

Query: 233 SLAAEVLKE 241
           +L    L E
Sbjct: 222 ALLGSALAE 230


>gi|307320434|ref|ZP_07599850.1| IstB domain protein ATP-binding protein [Sinorhizobium meliloti
           AK83]
 gi|306893847|gb|EFN24617.1| IstB domain protein ATP-binding protein [Sinorhizobium meliloti
           AK83]
          Length = 270

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 57/165 (34%), Gaps = 37/165 (22%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----- 83
            F F           +V  A   A+   D W    +  ++L G  G GKS LA       
Sbjct: 79  TFDFTAVP-------MVSKARVMALVAGDVWLKNGAN-LMLFGGPGGGKSHLAAAIGAGL 130

Query: 84  ----WS----------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---L 126
               W            K ++ R  N+        +D    ++L+D+  +  +  +   L
Sbjct: 131 IENGWRVLFTRTTDLVQKLQAAR-RNLDLEGAIAKLDKYHLLVLDDMAYVSKDQAETSVL 189

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           F +I S      SLL+TA      W    PD     KA T+  I 
Sbjct: 190 FELI-SARYERRSLLITANQPFGEWDKVFPD-----KAMTLAAID 228


>gi|255537837|ref|XP_002509985.1| Cell division protein ftsH, putative [Ricinus communis]
 gi|223549884|gb|EEF51372.1| Cell division protein ftsH, putative [Ricinus communis]
          Length = 925

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 21/100 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P   V+L GP G GK+ +A   + ++    +         +L+                 
Sbjct: 447 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN 506

Query: 111 ----VLLEDIDLLDFNDTQLF-----HIINSIHQYDSSLL 141
               + +++ID L      +F     H+ N+  Q   + L
Sbjct: 507 KPSVIFIDEIDALATRRQGIFKESTDHLYNAATQERETTL 546


>gi|114320863|ref|YP_742546.1| recombination factor protein RarA [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227257|gb|ABI57056.1| Recombination protein MgsA [Alkalilimnicola ehrlichii MLHE-1]
          Length = 461

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 36/197 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + ++ + +     S +   +  I     +   +          T
Sbjct: 73  MILWGPPGTGKTTLARLVAEAAEARFLTLSAVMAGVKDIRAAMEEATRV----RAAGGRT 128

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A V  +
Sbjct: 129 LLFVDEVHRFNKAQQDAFLPWVEDGTVIFIGATTENPSFELNNA---LLSR---ARVYVL 182

Query: 171 SLPDDDFLEKVIVKMFA--DRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223
              D+  +E ++ +  A  +R     + +       +V+  +     A + +  ++  A 
Sbjct: 183 RALDEVAIEGIVRQALAEPERGYGGRVRLTDDALRLVVRAAD---GDARRALTTLEIAAD 239

Query: 224 LSRGMGITRSLAAEVLK 240
           L+    +  +   E + 
Sbjct: 240 LAESDTVDEAAIREAVA 256


>gi|146293105|ref|YP_001183529.1| recombination factor protein RarA [Shewanella putrefaciens CN-32]
 gi|145564795|gb|ABP75730.1| Recombination protein MgsA [Shewanella putrefaciens CN-32]
          Length = 443

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 34/177 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +     
Sbjct: 52  MMLWGPPGTGKTTLAELIAQYSNAHVERISAVTSGVKEIR------AAIEQAKAIAESRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I    ++ +  ++ +  AD       RQ+ + + +   + Q  +     A  L++ M
Sbjct: 162 IKRLSNNEIAHIVTQALADTERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELM 218


>gi|300858568|ref|YP_003783551.1| hypothetical protein cpfrc_01151 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686022|gb|ADK28944.1| hypothetical protein cpfrc_01151 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206281|gb|ADL10623.1| Replication-associated recombination protein A [Corynebacterium
           pseudotuberculosis C231]
 gi|302330838|gb|ADL21032.1| Uncharacterized AAA domain-containing protein [Corynebacterium
           pseudotuberculosis 1002]
          Length = 445

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 30/176 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           VIL GP G+GK+ +A++ S  +                  + I ++  S++   R  + +
Sbjct: 64  VILYGPPGTGKTTIASLISTATGHHFVGLSALNSGVKEVRAVIDEARRSLIHGKRTVLFI 123

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +  + LL+ A T   S+ V  P L SR   + V+++  
Sbjct: 124 DEVHRFSKTQQDALL----AAVENRTVLLVAATTENPSFSVVSP-LLSR---SLVLQLQP 175

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            D   +++V+ +   D R +     +  +    +V         A + +  ++  A
Sbjct: 176 LDSGAIKEVLQRAIVDSRGLGSRIHVTDEALEQLVLLAG---GDARRALTYLEAAA 228


>gi|320581575|gb|EFW95795.1| 26S protease regulatory subunit 6A [Pichia angusta DL-1]
          Length = 426

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++          
Sbjct: 206 PPKGALMYGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFELAKEK 265

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N        D   ++ A     + 
Sbjct: 266 SPTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFDSDDRVKVLAATNRVDTL 325

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++  LP ++   +++      R++  D  +
Sbjct: 326 DPAL--LRSGRLD--RKIEFPLPSEEARAQILQIHA--RKMTCDDNV 366


>gi|294792127|ref|ZP_06757275.1| ATPase, AAA family [Veillonella sp. 6_1_27]
 gi|294457357|gb|EFG25719.1| ATPase, AAA family [Veillonella sp. 6_1_27]
          Length = 433

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++  GP G+GK+ LA I +  S S   +  A ++    + T    ++ED      +  
Sbjct: 51  PSMLFYGPCGTGKTTLAGIIAKVSNSYFVNLNATNVGIGELRT----IIEDARKRVRSLQ 106

Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           Q   LF    H  N           +  + +L+ A T    + V  P L SRL+   ++ 
Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199
           +       + +++ +   D       R + +  ++  
Sbjct: 163 LEALTPKAIGQILRRAITDEEVGLGKRYLQVTDEVLE 199


>gi|90093334|ref|NP_001035017.1| transitional endoplasmic reticulum ATPase-like [Danio rerio]
 gi|89130628|gb|AAI14307.1| Zgc:136908 [Danio rerio]
 gi|220672874|emb|CAX14485.1| novel protein similar to vertebrate valosin-containing protein
           (VCP, zgc:136908) [Danio rerio]
          Length = 805

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 239 PPRGILLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 298

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 299 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSVDAA 358

Query: 155 L 155
           L
Sbjct: 359 L 359



 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 512 PSRGVLFYGPPGCGKTLLAKAIANECQANFVSIKGPELLTMWFGESEANVRDVFDKA 568


>gi|54297677|ref|YP_124046.1| recombination factor protein RarA [Legionella pneumophila str.
           Paris]
 gi|53751462|emb|CAH12880.1| hypothetical protein lpp1728 [Legionella pneumophila str. Paris]
          Length = 434

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 28/182 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G GK+ +A + +        +  A       I       +E       +D Q 
Sbjct: 49  MILWGPPGVGKTTIARLTAQAFDCEWIALSAVFSGVKDIRA----AIEKAQEYLIHDKQT 104

Query: 126 -LF----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q   +LL          + A T   S+ V  P L SR   A V  +
Sbjct: 105 ILFIDEIHRFNKAQQD--ALLPYTESGLITFIGATTENPSFEVN-PALLSR---AQVYVL 158

Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            L  +  L+ + ++        +   ++   +++   +        L+++     L+   
Sbjct: 159 KLLSEQELKLLFLRAHQRALSSLQFTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKT 218

Query: 229 GI 230
            +
Sbjct: 219 AV 220


>gi|325107722|ref|YP_004268790.1| Holliday junction DNA helicase RuvB domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324967990|gb|ADY58768.1| Holliday junction DNA helicase RuvB domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 318

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 68/192 (35%), Gaps = 38/192 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123
              +L GP G GKS LAN+ + +  +T    + +S+          +  +D +L+  ++ 
Sbjct: 45  PDTLLTGPPGQGKSSLANVIAQELATTLHETLGQSVSGPAELNALLLGAKDGELIHIDEV 104

Query: 124 --------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC--------------LPDLCSR 161
                   T LF     I      LL+T +   +S  +               L  L  R
Sbjct: 105 HELPTEQQTALF-----ICLDQRKLLVTNQKGALSIPLAKFSLLLSTTDPHKVLQPLRDR 159

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           ++   V++++   +  L  V+ +        I   +   I  R   +   A ++      
Sbjct: 160 MR--MVLELAYLTEAELADVVRQRSRALNWNIADGVPDEIAVRGRGTPRIALRI------ 211

Query: 222 LALSRGMGITRS 233
             L     ++RS
Sbjct: 212 --LQSARRVSRS 221


>gi|167752814|ref|ZP_02424941.1| hypothetical protein ALIPUT_01075 [Alistipes putredinis DSM 17216]
 gi|167659883|gb|EDS04013.1| hypothetical protein ALIPUT_01075 [Alistipes putredinis DSM 17216]
          Length = 423

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 36/190 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIA---KSLDSILIDTRKPVLLEDIDLL 119
              IL GP G GK+ LA I +   K      S +    K +  +L   RK    +    +
Sbjct: 40  PSFILWGPPGVGKTTLAKIVATTLKRPFYTLSAVTSGVKEVREVLESARKQKFFDSKPPI 99

Query: 120 DF-NDTQLFHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            F ++    H  N           +     L+ A T   S+ V  P L SR     V  +
Sbjct: 100 LFIDEI---HRFNKSQQDSLLGAVEQGVVTLIGATTENPSFEVISP-LLSR---CQVYIL 152

Query: 171 SLPDDDFLEKVIVKMFA------DRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
               D  L+ ++ +  A       R+I +   + L  +       S   A KL++ +D +
Sbjct: 153 QPMTDGELQTLLDRALATDPELKTREIEVQETEALFRF-------SGGDARKLLNILDII 205

Query: 223 ALSRGMGITR 232
             +    +T 
Sbjct: 206 TGAANGKVTI 215


>gi|302348724|ref|YP_003816362.1| Replication factor C large subunit [Acidilobus saccharovorans
           345-15]
 gi|302329136|gb|ADL19331.1| Replication factor C large subunit [Acidilobus saccharovorans
           345-15]
          Length = 484

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 74/211 (35%), Gaps = 30/211 (14%)

Query: 55  LIDSWPSW--PS-RVVILVGPSGSGKSCLANIWSDKS-------------RSTRFSNIAK 98
            +++W     P  R  +L GP G GK+ L    +                R+        
Sbjct: 34  WLEAWLKGRPPEKRAALLYGPPGVGKTSLVEAAAHDYKLEVLELNASDYRRAEDIRRTVG 93

Query: 99  SLDSILIDTRKPVLL--EDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                   T + +++  +++D +    +   L  ++  I    + +++TA      W   
Sbjct: 94  VAAFRRPLTGRLMIILMDEVDGISAKGDAGGLDELLRIIPNAQNPIVLTANDP---WKDQ 150

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L  L    +   +++        +  ++  +     I  D++   YI    +++      
Sbjct: 151 LRPLR---EVTLMIEFKNLSTGNVVSLLQNICDREHIECDREALRYIA---DKNAGDVRA 204

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQC 245
            V+ ++ +A   G  +T  LA  +++   + 
Sbjct: 205 CVNDLEAVAEGYG-KVTMELARALVRGRDKS 234


>gi|161760546|ref|NP_907435.2| recombination factor protein RarA [Wolinella succinogenes DSM 1740]
          Length = 396

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 31/225 (13%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
           QL         I ++ L    A     RLI+             GP G+GK+  A I + 
Sbjct: 6   QLLRPTSFEDLIGQEHLF--GANAPLRRLIEH---GSLPHAFFYGPPGTGKTSAAKIIAK 60

Query: 87  K---------SRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQLFHIINSIHQY 136
           +         + + +   +   L        KP+L ++++  L  N  ++      + + 
Sbjct: 61  RLDRPFALFNATTFKIEELRSYLKEYKNALLKPLLFIDEVHRLSKNQQEVLLP---LMEN 117

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
             ++++ A T    + +    + SR   + + +        LE ++ ++  +  I +D  
Sbjct: 118 HEAIIIGASTENPYFAMTGA-IRSR---SMLFEFKPLGKKELEILLERVCENHSILLDNS 173

Query: 197 LAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLK 240
              Y+++  E     A  +++ +D   +L         L+ E LK
Sbjct: 174 ARDYLLRSSE---GDARAMLNLLDCAYSLGES-----PLSLETLK 210


>gi|241763747|ref|ZP_04761795.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
 gi|241367052|gb|EER61437.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN]
          Length = 437

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 24/194 (12%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112
           IL GP G GK+ +A + +D   +   S                +A+S    L+  R  V 
Sbjct: 49  ILWGPPGVGKTTIARLMADAFDAQFISISAVLGGVKDIRDAVQLAESARDGLMQQRTIVF 108

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR   A V  +  
Sbjct: 109 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQP 161

Query: 173 PD-DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGI 230
              DD  + V +         I+ +    +V   +         ++ ++  A       I
Sbjct: 162 LSTDDLKQIVALAQSQQALPAIENEAIERLVAYADGDARRLLNTLETLEMAAAQEQLAEI 221

Query: 231 TRSLAAEVLKETQQ 244
           T +   +VL E  +
Sbjct: 222 TDAWLLKVLGERMR 235


>gi|54025615|ref|YP_119857.1| recombination factor protein RarA [Nocardia farcinica IFM 10152]
 gi|54017123|dbj|BAD58493.1| putative AAA ATPase [Nocardia farcinica IFM 10152]
          Length = 451

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 24/173 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK--------PVLL 113
           V+L GP G+GK+ LA++ S  +          S   K + +++   R+         + +
Sbjct: 71  VLLFGPPGTGKTTLASLISQATGRRFEALSALSAGVKEVRAVIDLARRRLTAGERTVLFI 130

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +    LL+ A T   S+ V  P L SR   + V+++  
Sbjct: 131 DEVHRFSKTQQDALL----AAVENRIVLLVGATTENPSFSVVSP-LLSR---SLVLQLRS 182

Query: 173 PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223
             D  +  V+ +  AD R      ++    +  + R +   A + +  ++  A
Sbjct: 183 LTDADIRTVLDRALADPRGFGGAYQVTDAALDHIVRIAGGDARRALTALEASA 235


>gi|295092161|emb|CBK78268.1| phage DNA replication protein (predicted replicative helicase
           loader) [Clostridium cf. saccharolyticum K10]
          Length = 283

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 21/118 (17%)

Query: 50  EQAVRLIDSWPSWPSRVV-IL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96
             A   +D W     + +  L  G  GSGKS LA   ++              +   +++
Sbjct: 109 ATARFFVDHWEEMQEKKLGYLFWGHVGSGKSYLAGCIANALMEKEVSVYMTNFAAILNDL 168

Query: 97  AKSLDS-----ILIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTART 146
           A S +        +     ++++D  +    +  L  + N I   ++    L++T   
Sbjct: 169 AASFEGRNEYIARLCRYPLLIIDDFGMERGTEYGLEQVYNVIDSRYRSGKPLVVTTNR 226


>gi|239631709|ref|ZP_04674740.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526174|gb|EEQ65175.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 423

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 34  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 93

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +    +L+ A T      +  P + SR     + ++     D 
Sbjct: 94  RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPDD 146

Query: 178 LEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +   I +  A       D Q+ +      Y+       L  A   ++
Sbjct: 147 ITSAIKRALADHKRGLGDYQVDLQPDALDYLTHATNGDLRSALNGLE 193


>gi|114566015|ref|YP_753169.1| recombination factor protein RarA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336950|gb|ABI67798.1| Recombination protein MgsA [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 440

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 28/196 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI------DLLD 120
            +L GP GSGK+ +A+I +  + S   +  A S     I        + +       ++ 
Sbjct: 55  FVLYGPPGSGKTTIAHIIARTTSSHYAAIKAVSSGVGEIRKIAADAADHLKYYQQSSIIF 114

Query: 121 FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            ++    H  N   Q        D +L++   T           L SR+K   +  +   
Sbjct: 115 VDEI---HRFNKSQQDVLLPYVEDGTLILIGATTENPLYEINNALLSRMK---LYIMEAL 168

Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           + + L +++ +  AD  R +      ID++    IVQ  +     A  ++D + + + S 
Sbjct: 169 NANSLRRIVEQALADPERGLGKHNISIDEQSMVMIVQAAQGDARTALNILDTL-HNSYSS 227

Query: 227 GMGITRSLAAEVLKET 242
             G +  +  E+L++ 
Sbjct: 228 KDG-SLRITPELLEKV 242


>gi|119774909|ref|YP_927649.1| recombination factor protein RarA [Shewanella amazonensis SB2B]
 gi|119767409|gb|ABL99979.1| Recombination protein MgsA [Shewanella amazonensis SB2B]
          Length = 442

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 29/193 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++L GP G+GK+ LA + +  + +   R S +   +  I     +    +++       T
Sbjct: 51  MLLWGPPGTGKTTLAELVARYANAHVERISAVTSGVKEIRAAIEQA---KNVAQSRGQRT 107

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + + + A T   S+ V    L SR     V  I  
Sbjct: 108 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEVNNA-LLSR---CRVYLIKR 163

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +DD + +++ +  +D       R + +  +L + I +  +     A  L++ M +L L 
Sbjct: 164 LEDDAIGQILAQANSDEARGLGKRGLLLKAELKSAIARLCDGDARKALNLLELMSDL-LP 222

Query: 226 RGMGITRSLAAEV 238
            G      L +EV
Sbjct: 223 DGGEYNLELLSEV 235


>gi|288561110|ref|YP_003424596.1| ATPase [Methanobrevibacter ruminantium M1]
 gi|288543820|gb|ADC47704.1| ATPase [Methanobrevibacter ruminantium M1]
          Length = 375

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 50/221 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI----- 56
           +++ E+ S  V D  K+ +   K +Q    F        DD +V     ++   +     
Sbjct: 98  SIISENTSIVVADVDKDKRSSIKSKQYDVHF--------DD-IVGQENAKSKSKLIYKYL 148

Query: 57  ---DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLD 101
              D + +W  + V+  G  G+GK+ LA   +++                   + A  + 
Sbjct: 149 QNPDKFGTWAPKNVLFYGAPGTGKTMLAKALANELDIRLYLVKSTSLIGEHVGDAASRIH 208

Query: 102 SILIDTRK----PVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTA 144
            +     +     + +++ID +  +                L   ++ I   D  + + A
Sbjct: 209 ELFEAASRNAPSLIFIDEIDAIALHRSFQSLRGDVAEIVNSLLTEMDGISPNDGVVTIAA 268

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
              P +    +    SR +     K+   DD+  E +++ +
Sbjct: 269 TNNPSAIDFAI---RSRFEEEIEFKL-PSDDERREIIMLNL 305


>gi|194389988|dbj|BAG60510.1| unnamed protein product [Homo sapiens]
          Length = 765

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 206 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 265

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 266 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 325

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 326 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 365


>gi|21362820|sp|Q975U2|PAN_SULTO RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
          Length = 392

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   + +S +T    +A       +     ++ E  +L 
Sbjct: 167 PPKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQKFVGEGARIVREVFELA 223


>gi|228926918|ref|ZP_04089984.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228832653|gb|EEM78224.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 161

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 45/116 (38%), Gaps = 24/116 (20%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------- 104
            W    +++ G  G+GK+ LA    ++     +  + +S+  +L                
Sbjct: 6   EWNGESLMIWGEPGNGKTHLAAAIVNELSKKAYIVVFQSVPELLQRIRSTFNSENKENET 65

Query: 105 -----IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
                +     ++L+DI      ++ + +LF+II+  ++ +   L T+   P    
Sbjct: 66  QIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLEPKELK 121


>gi|213401066|gb|ACJ47181.1| chromosomal replication initiation protein [Wolbachia endosymbiont
           of Dipetalonema gracile]
          Length = 125

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SRL    V  I+    +    ++        +++ K +  ++ + ++ ++   E  ++K
Sbjct: 4   KSRLGWGLVADINETTFELRLGILQAKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNK 63

Query: 219 MDNLALSRGMGITRSLAAEVL 239
           + + +L  G  +T   A+E L
Sbjct: 64  VTHTSLI-GRSMTVESASETL 83


>gi|148642702|ref|YP_001273215.1| cell division protein CDC48 [Methanobrevibacter smithii ATCC 35061]
 gi|148551719|gb|ABQ86847.1| cell division control protein Cdc48, AAA+ ATPase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 730

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 77/219 (35%), Gaps = 52/219 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V++ GP G+GK+ LA   + +S +   +                N+ +  +    +
Sbjct: 236 PPKGVLMHGPPGTGKTLLAKAVASESDAHFIAINGPEIMSKYVGGSEENLREYFEEAEEN 295

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +      +++ A   P S    
Sbjct: 296 APSIIFIDELDAIAPKREDTQGETERRTVAQLLTLMDGLKSRGQVVVIGATNRPDSLDQA 355

Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           L      D          ++I +PD +  E+++      R + + + +  + +       
Sbjct: 356 LRRPGRFD--------REIEIGVPDSEEREEILE--IHTRNMPLAEDVDLHKLASTTHGF 405

Query: 210 VFAEKLVDKMDNLAL--SRGMGITRSLAAEVLKETQQCD 246
           V A       D  +L     M + R +  E+  + +  +
Sbjct: 406 VGA-------DLESLCKEAAMRVVRRIIPEIKNDEEIPE 437


>gi|145540886|ref|XP_001456132.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423942|emb|CAK88735.1| unnamed protein product [Paramecium tetraurelia]
          Length = 818

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                 N+ K+ +    +
Sbjct: 250 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKN 309

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 310 SPAIIFIDEIDSIAPKREKVSGEVERRVVSQLLTLMDGLKGRGQVIVIGATNRPNSID-- 367

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +++      + + + + +
Sbjct: 368 -PALR-RFGRFDREIDIGVPDEVGRMEIL--RIHTKNMKLAEDV 407


>gi|28897881|ref|NP_797486.1| recombination factor protein RarA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364483|ref|ZP_05777108.1| recombination factor protein RarA [Vibrio parahaemolyticus K5030]
 gi|260877040|ref|ZP_05889395.1| recombination factor protein RarA [Vibrio parahaemolyticus AN-5034]
 gi|260898067|ref|ZP_05906563.1| recombination factor protein RarA [Vibrio parahaemolyticus
           Peru-466]
 gi|260902448|ref|ZP_05910843.1| recombination factor protein RarA [Vibrio parahaemolyticus AQ4037]
 gi|28806094|dbj|BAC59370.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088962|gb|EFO38657.1| recombination factor protein RarA [Vibrio parahaemolyticus
           Peru-466]
 gi|308093687|gb|EFO43382.1| recombination factor protein RarA [Vibrio parahaemolyticus AN-5034]
 gi|308110636|gb|EFO48176.1| recombination factor protein RarA [Vibrio parahaemolyticus AQ4037]
 gi|308114616|gb|EFO52156.1| recombination factor protein RarA [Vibrio parahaemolyticus K5030]
          Length = 449

 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            D + +   + +   D  R +          +   +        RM  SL + E L D  
Sbjct: 166 LDKEEISLALNQAINDKERGLGDTPANFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223

Query: 220 DNLALSRGMGITRSLAAEV 238
           ++ A      IT  L AEV
Sbjct: 224 EDNA-QGEKEITLKLLAEV 241


>gi|73971222|ref|XP_866137.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase
           (TER ATPase) (15S Mg(2+)-ATPase p97 subunit)
           (Valosin-containing protein) (VCP) isoform 9 [Canis
           familiaris]
          Length = 787

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 25/144 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---LEDIDLL 119
           P R ++L GP G+GK+ +A   ++++ +  F      + S L    +  L    E+ +  
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 120 DFND------TQLFHIINSIHQYDSSLLMTARTFPVSW--------------GVCLPDLC 159
              +      +QL  +++ + Q    ++M A   P S                + +PD  
Sbjct: 297 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 356

Query: 160 SRLK--AATVVKISLPDDDFLEKV 181
            RL+        + L DD  LE+V
Sbjct: 357 GRLEILQIHTKNMKLADDVDLEQV 380



 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 491 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 547


>gi|50365221|ref|YP_053646.1| recombination factor protein RarA [Mesoplasma florum L1]
 gi|50363777|gb|AAT75762.1| putative helicase subunit of Holliday junction resolvase
           [Mesoplasma florum L1]
          Length = 410

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTR---------FSNIAKSLDSILIDTRKPVLLED 115
           R +I  GPSG GK+  A   ++                 N+ K +D  +   R  +++++
Sbjct: 40  RSLIFYGPSGVGKTSFAIALANDLNIEYDLFNASYDKKENLTKIIDKAINKERFILIIDE 99

Query: 116 IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           I  L+ +   +  ++N +   +  L  T    P  +    P + SR   AT++++     
Sbjct: 100 IHRLNRDKQDI--LLNFMESGNVYLFATTTENP--FFTINPAIRSR---ATILELKRVSH 152

Query: 176 DFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRGMGITR 232
           D     + K+  D++  I I  +   Y+    E +      L++ ++    L +G  IT 
Sbjct: 153 DESFAFVNKLIKDKKVDINIKPESLKYL---CELNSGDIRSLLNNIELFHNLYKGEEITI 209

Query: 233 SLAAEVLKETQQC 245
            L + ++ + +  
Sbjct: 210 DLISSIISQGKNP 222


>gi|255526973|ref|ZP_05393866.1| Microtubule-severing ATPase [Clostridium carboxidivorans P7]
 gi|296185137|ref|ZP_06853547.1| AAA family ATPase, CDC48 family protein [Clostridium
           carboxidivorans P7]
 gi|255509332|gb|EET85679.1| Microtubule-severing ATPase [Clostridium carboxidivorans P7]
 gi|296049971|gb|EFG89395.1| AAA family ATPase, CDC48 family protein [Clostridium
           carboxidivorans P7]
          Length = 704

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 39/162 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++L GP G+GK+ +A   + ++ +         + +      +                 
Sbjct: 217 ILLYGPPGTGKTLIAKAIASETEAHFIHVNGPEIMNKYYGESEAKIRQIFKEARNKAPSI 276

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           + L+++D +                 QL  +++ +      +++ A   P S    L   
Sbjct: 277 IFLDELDSIAPRRENVHGDVEKRVVAQLLALMDGLESRGQVVVIGATNIPDSLDTALR-- 334

Query: 159 CSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               +A      + I  PD D    ++      + + +D  +
Sbjct: 335 ----RAGRFDKEIAIMPPDKDGRFNILQ--IHTKGMPLDDDV 370


>gi|227538998|ref|ZP_03969047.1| recombination ATPase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241201|gb|EEI91216.1| recombination ATPase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 439

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 34/201 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FND 123
             +IL GP G GK+ LA + +       FS  A       I      ++E  D L  FN 
Sbjct: 55  PSMILWGPPGVGKTTLALLMAKALDRPFFSLSAIQSGVKDIRE----VIEKADQLQKFNQ 110

Query: 124 TQ--LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
            Q  LF    H  +           +     L+ A T   S+ V    L SR     V  
Sbjct: 111 EQPILFIDEIHRFSKSQQDSLLGAVERGLVTLIGATTENPSFEVISA-LLSR---CQVYV 166

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDK--KLAAY-IVQRMERSLVFAEKLVDKMD---NLA 223
           +    ++ L  ++    ++ +   ++  ++  Y  + R+  S   A KL++ ++   N +
Sbjct: 167 LKHLTEEELIGIVNSAISEDEFLKEEKIEVLEYEALLRL--SGGDARKLLNVLELVVNAS 224

Query: 224 LSRGMGITRSLAAEVLKETQQ 244
           LS    IT      VLK+ QQ
Sbjct: 225 LSLNKPITNEF---VLKQVQQ 242


>gi|301066249|ref|YP_003788272.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Lactobacillus casei str. Zhang]
 gi|300438656|gb|ADK18422.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus casei str. Zhang]
          Length = 431

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +    +L+ A T      +  P + SR     + ++     D 
Sbjct: 102 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPDD 154

Query: 178 LEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +   I +  A       D Q+ +      Y+       L  A   ++
Sbjct: 155 ITSAIKRALADHKRGLGDYQVDLQPDALDYLTHATNGDLRSALNGLE 201


>gi|20808203|ref|NP_623374.1| recombination factor protein RarA [Thermoanaerobacter tengcongensis
           MB4]
 gi|254479310|ref|ZP_05092650.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653]
 gi|20516797|gb|AAM24978.1| uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034758|gb|EEB75492.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 440

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 26/144 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G GK+ LA I ++ + S                  +A++    +   R  V +
Sbjct: 55  MILWGPPGVGKTTLAMIIANMTNSKFVNFSAVLSGIKEIKEIMAQAERDAMYGQRTVVFI 114

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++I   +      F  H+     +  + +L+ A T   S+ V    L SR   + V  + 
Sbjct: 115 DEIHRFNKAQQDAFLPHV-----EKGNIILIGATTENPSFEVNSA-LLSR---SKVFMMK 165

Query: 172 LPDDDFLEKVIVKMFAD--RQIFI 193
             D   +  ++ +   D  R + +
Sbjct: 166 PLDVKDIMIILKRALKDEERGLGL 189


>gi|17229735|ref|NP_486283.1| hypothetical protein all2243 [Nostoc sp. PCC 7120]
 gi|17131334|dbj|BAB73942.1| all2243 [Nostoc sp. PCC 7120]
          Length = 613

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 46/154 (29%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS------------TRFSNIAKSLDSILIDTRKP---- 110
           ++L GP G+GK+ LA   + ++R+                   +++  +    R+     
Sbjct: 396 ILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLSRWVGASEQAVRELFAKARQAEPCV 455

Query: 111 VLLEDIDLLD-----------FNDTQLFHII------------------NSIHQYDSSLL 141
           V +++ID L             +D  +  ++                  N     D +LL
Sbjct: 456 VFIDEIDTLAPARGSFSGDSGVSDRVVGQLLTELDGIEVGSTILVIGATNRPDALDPALL 515

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
              R   +   V LPDL SRL    V     P D
Sbjct: 516 RAGRLD-LQMKVDLPDLASRLAILLVHSQGRPLD 548



 Score = 35.1 bits (80), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P+R V+LVGP G+GK+  A   +++      +               + L  I     K 
Sbjct: 126 PTRGVLLVGPPGTGKTLTARGLAEELGVNYIALVGPEVISKYYGEAEQRLRGIFEKAAKN 185

Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID L  + +             L  +++        +++ A   P      
Sbjct: 186 APCIIFIDEIDSLAPDRSAVEGEVEKRLVAQLLSLMDGFSHSQGVIVLAATNRPDHLDPA 245

Query: 155 L 155
           L
Sbjct: 246 L 246


>gi|289578597|ref|YP_003477224.1| ATPase AAA [Thermoanaerobacter italicus Ab9]
 gi|289528310|gb|ADD02662.1| AAA ATPase [Thermoanaerobacter italicus Ab9]
          Length = 266

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 30/171 (17%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVV--I 68
            Q+      +  Q      R    + ++  ++   +     AV     WP   ++ +  +
Sbjct: 51  NQQRKIRLERLRQYSLMDKRFEQCTFENFQINENNQKLYKMAVNYCKRWPEMKAKNIGFL 110

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------------IDT 107
             GP G+GKS LA   ++K        IA S   +L                     +  
Sbjct: 111 FWGPPGTGKSFLAFCIANKLIENLVPVIAISTIGLLNRIKQTYKNYSEEEEVEIINILRN 170

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
              ++L+D+   + ND    +L+ II+S ++    +++T           L
Sbjct: 171 ASLLVLDDLGAENNNDWAREKLYEIIDSRYRDGKPMIVTTNLTLTQLKEKL 221


>gi|251780556|ref|ZP_04823476.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084871|gb|EES50761.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 344

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 27/201 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +           +++           L+D D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLANIIAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEI-- 112

Query: 127 FHIINSIHQ-------YDSSL--LMTARTFPVSWGVCLPD------------LCS--RLK 163
            H +N   +        D +L  ++       S  + LP             L S  R +
Sbjct: 113 -HRLNRSVEEILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDR 171

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
              +  +   D++ L++++++  A     I ++ A  I  R   +   A +L+ ++ D  
Sbjct: 172 FGVLCAMEYYDENQLKEIVIRSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYS 231

Query: 223 ALSRGMGITRSLAAEVLKETQ 243
            +     I+   A E L+  +
Sbjct: 232 EVKSNKVISLKEAREALELLE 252


>gi|76802726|ref|YP_330821.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
 gi|76558591|emb|CAI50183.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
          Length = 702

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 62/173 (35%), Gaps = 39/173 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST----------------RFSNIAKSLDSILID 106
           P   V+L GP G+GK+ +A   +++  +                     + ++ +  + +
Sbjct: 222 PPSGVLLYGPPGTGKTLIAKAVANEVDAHFEVIDGPEIVSKYKGESEERLRETFERAVDN 281

Query: 107 TRKPVLLEDIDLLDF--NDTQ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
               V +++ID +    ++           L  +++ +  +   +++ A     +    L
Sbjct: 282 QPAVVFIDEIDSIAGTRDEDADMENRVVAQLLTLMDGLENHGRLIVIGATNRVDAIDPAL 341

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQR 204
                  +       ++I  PD+    +++      R + + + +   Y+  R
Sbjct: 342 R------RGGRFDREIEIGAPDEGGRREILDVHT--RGMPLSEDVDIDYLAAR 386



 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P   ++L GP G+GK+ LA   + +S     S     L    +   +  + E  D  
Sbjct: 481 PPTGILLYGPPGTGKTLLARALAGESDVNFVSVAGPELLDKYVGESEKAVREVFDRA 537


>gi|319442139|ref|ZP_07991295.1| recombination factor protein RarA [Corynebacterium variabile DSM
           44702]
          Length = 457

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 76/196 (38%), Gaps = 33/196 (16%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL------ 112
              VIL GP G+GK+ +A++ +  S          ++  K + S++ D R+ +       
Sbjct: 71  ESSVILYGPPGTGKTTVASLIAGGSGRRFEALSALNSGVKEVRSVIADARRRLADGIPTV 130

Query: 113 --LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             ++++          L     S  +  + LL+ A T   S+ V  P L SR   + +V+
Sbjct: 131 LFIDEVHRFSKTQQDALL----SAVENRTVLLVAATTENPSFSVVAP-LLSR---SLLVQ 182

Query: 170 ISLPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
           +   +   +  ++ +   D R     I +  +    +      +   A + +  ++  A 
Sbjct: 183 LKPLEPADISTLLRRAIEDPRGYDGKITLTDEACDRLTA---LAAGDARRALTYLEAAAE 239

Query: 225 S---RGMGITRSLAAE 237
           S    G  +T  + A 
Sbjct: 240 SVEDSGGEVTVDVVAR 255


>gi|237844815|ref|XP_002371705.1| cell division protein 48, putative [Toxoplasma gondii ME49]
 gi|211969369|gb|EEB04565.1| cell division protein 48, putative [Toxoplasma gondii ME49]
          Length = 963

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 35/162 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108
           R V+L G SG GK+ LA   +++  +                   +N+ +  +     + 
Sbjct: 409 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 468

Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             + +++ID +                 QL  +++ +      +++ A   P      L 
Sbjct: 469 CLLFIDEIDSIASKREKTQGEVEKRIVAQLLTLMDGVSSDKGIVVLAATNRPNQLDPALR 528

Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               R  +    ++I +PD+    +++ K      + +   +
Sbjct: 529 ----RFGRFDREIEIPIPDEKGRTEILKKKAEK--MNLGPDV 564


>gi|27544696|dbj|BAC55043.1| DnaA [Mycobacterium fortuitum subsp. fortuitum]
          Length = 188

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83
             + D  ++ ++   A     +    P+R    + + G SG GK+ L + 
Sbjct: 121 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 170


>gi|288869580|ref|ZP_05975070.2| AAA family ATPase [Methanobrevibacter smithii DSM 2374]
 gi|288861611|gb|EFC93909.1| AAA family ATPase [Methanobrevibacter smithii DSM 2374]
          Length = 740

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 77/219 (35%), Gaps = 52/219 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V++ GP G+GK+ LA   + +S +   +                N+ +  +    +
Sbjct: 246 PPKGVLMHGPPGTGKTLLAKAVASESDAHFIAINGPEIMSKYVGGSEENLREYFEEAEEN 305

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +      +++ A   P S    
Sbjct: 306 APSIIFIDELDAIAPKREDTQGETERRTVAQLLTLMDGLKSRGQVVVIGATNRPDSLDQA 365

Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           L      D          ++I +PD +  E+++      R + + + +  + +       
Sbjct: 366 LRRPGRFD--------REIEIGVPDSEEREEILE--IHTRNMPLAEDVDLHKLASTTHGF 415

Query: 210 VFAEKLVDKMDNLAL--SRGMGITRSLAAEVLKETQQCD 246
           V A       D  +L     M + R +  E+  + +  +
Sbjct: 416 VGA-------DLESLCKEAAMRVVRRIIPEIKNDEEIPE 447


>gi|163801973|ref|ZP_02195869.1| seryl-tRNA synthetase [Vibrio sp. AND4]
 gi|159174114|gb|EDP58922.1| seryl-tRNA synthetase [Vibrio sp. AND4]
          Length = 449

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 67/199 (33%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K+  
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLMS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            D D +   + +   D  R +          +   +        RM  SL + E L D  
Sbjct: 166 LDKDEISLALNQAITDKERGLGNTSAHFADNVLERLAELVNGDARM--SLNYLELLYDMA 223

Query: 220 DNLALSRGMGITRSLAAEV 238
           ++ A      IT  L AEV
Sbjct: 224 EDNA-QGDKEITLRLLAEV 241


>gi|86157157|ref|YP_463942.1| recombination factor protein RarA [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773668|gb|ABC80505.1| Recombination protein MgsA [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 437

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 27/196 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS--------------NIAKSLDSILIDTRKP 110
             +IL GP G+GK+ LA I + ++ +                    A      +   R  
Sbjct: 52  PSLILWGPPGTGKTTLARIVAQRTGADFVPFSAVLGGVKEIREIVAAARDRRRMHRKRTI 111

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + +++I          F       +  +  L+ A T   S+ V    L SR     V  +
Sbjct: 112 LFVDEIHRFTRAQQDAFLPH---VEDGTITLIGATTENPSFEVNAA-LLSR---CRVATL 164

Query: 171 SLPDDDFLEKVIVKM-FADRQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA----L 224
               +D +  ++ +   A   +     LA      + R S   A K ++ ++  A    L
Sbjct: 165 RALTEDEVAALLDRATAAPEGLAGAVALAPEARDTIARLSYGDARKALNALEVSAAAVRL 224

Query: 225 SRGMGITRSLAAEVLK 240
           +    + ++ A E L+
Sbjct: 225 AGRPAVEKADAEEALQ 240


>gi|332535766|ref|ZP_08411508.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034834|gb|EGI71368.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 447

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 26/174 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I ++ + ++     A +     I        ++++      T +
Sbjct: 52  LILWGPPGVGKTTLAQIIANHADASLIQMSAVTAGVKDIRDSVTQARDNLES-RGQRTLM 110

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + + + A T   S+ +    L SR   A V  +    
Sbjct: 111 FVDEVHRFNKSQQDAFLPHIEDGTFIFVGATTENPSFALNNAIL-SR---ARVYVLKSLA 166

Query: 175 DDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           D  L  VI +        + + I I       +    + S   A K+++ ++  
Sbjct: 167 DTDLYTVIERALKQDEQLSQKHITIADNAKKAL---CQASGGDARKVLNLLEQA 217


>gi|328950019|ref|YP_004367354.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450343|gb|AEB11244.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinithermus
           hydrothermalis DSM 14884]
          Length = 325

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 78/206 (37%), Gaps = 30/206 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113
           P   ++L GP G GK+ LA++ +++           +        ++ +  ++    + +
Sbjct: 37  PLDHMLLFGPPGLGKTTLAHVIANELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDILFI 96

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157
           ++I  L     +  H+  ++  +   +++       +  + LP                 
Sbjct: 97  DEIHRLSRTAEE--HLYPAMEDFKIDIVLGQGPAARTLRLELPRFTLIGATTRPGLISSP 154

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      ++   P++  L + + +      + I+ + A  I +R   ++  A++L  
Sbjct: 155 LRSRFGIIEHLEFYTPEE--LAEGVARDARLLGLEIEHEAALEIGRRARGTMRIAKRLFR 212

Query: 218 KM-DNLALSRGMGITRSLAAEVLKET 242
           ++ D   ++    +T   A E L   
Sbjct: 213 RVRDFAEVAGDPRVTLERAREALDAL 238


>gi|225464722|ref|XP_002264062.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 534

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 33/182 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS------RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
             +IL GP G+GK+ +A    + S      R    S +   +  +     +   ++    
Sbjct: 144 PSIILWGPPGTGKTSIAKAIVNSSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKN 203

Query: 119 LDFNDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           ++   T LF    H  N         + +  S + + A T   S+ +  P L SR     
Sbjct: 204 MNSKRTLLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITP-LLSR---CR 259

Query: 167 VVKISLPDDDFLEKVIVKMFADRQ-----------IFIDKKLAAYIVQRMERSLVFAEKL 215
           V+ ++      +  ++ +  AD             I +      ++    +     A   
Sbjct: 260 VLTLNPLQPSHVASLLNRAVADTGRGLAWSVGGASIEVSDDAIDFLSSHCDGDARVALNA 319

Query: 216 VD 217
           ++
Sbjct: 320 LE 321


>gi|222445802|ref|ZP_03608317.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435367|gb|EEE42532.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii
           DSM 2375]
          Length = 740

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 77/219 (35%), Gaps = 52/219 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V++ GP G+GK+ LA   + +S +   +                N+ +  +    +
Sbjct: 246 PPKGVLMHGPPGTGKTLLAKAVASESDAHFIAINGPEIMSKYVGGSEENLREYFEEAEEN 305

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +      +++ A   P S    
Sbjct: 306 APSIIFIDELDAIAPKREDTQGETERRTVAQLLTLMDGLKSRGQVVVIGATNRPDSLDQA 365

Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           L      D          ++I +PD +  E+++      R + + + +  + +       
Sbjct: 366 LRRPGRFD--------REIEIGVPDSEEREEILE--IHTRNMPLAEDVDLHKLASTTHGF 415

Query: 210 VFAEKLVDKMDNLAL--SRGMGITRSLAAEVLKETQQCD 246
           V A       D  +L     M + R +  E+  + +  +
Sbjct: 416 VGA-------DLESLCKEAAMRVVRRIIPEIKNDEEIPE 447


>gi|221501587|gb|EEE27357.1| cell division protein, putative [Toxoplasma gondii VEG]
          Length = 963

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 35/162 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108
           R V+L G SG GK+ LA   +++  +                   +N+ +  +     + 
Sbjct: 409 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 468

Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             + +++ID +                 QL  +++ +      +++ A   P      L 
Sbjct: 469 CLLFIDEIDSIASKREKTQGEVEKRIVAQLLTLMDGVSSDKGIVVLAATNRPNQLDPALR 528

Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               R  +    ++I +PD+    +++ K      + +   +
Sbjct: 529 ----RFGRFDREIEIPIPDEKGRTEILKKKAEK--MNLGPDV 564


>gi|159040235|ref|YP_001539488.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205]
 gi|157919070|gb|ABW00498.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205]
          Length = 669

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 43/210 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 208 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKTNAPAI 267

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 268 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDTKGGVILIAATNRPDILDPAL 327

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD +  + ++      +    D  L   + +R       A
Sbjct: 328 ------LRPGRFDRQIPVDAPDMEGRKAILRVHAKGKPFTPDVDL-DAVARRTP-GFSGA 379

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             L + ++  AL       R++  + L+E+
Sbjct: 380 -DLANVINEAALLTARRDKRAITNDSLEES 408


>gi|315925759|ref|ZP_07921966.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620868|gb|EFV00842.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 442

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 23/148 (15%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------------IAKSL 100
           RLID         +IL GP G GK+ LA + + ++ +   +              +  + 
Sbjct: 45  RLIDRD---DIPSMILWGPPGVGKTTLAQVIARQTAAAFVAFSAVNSGIKDIKKIMGDAK 101

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                  R  V +++I   +      F       +  S +L+ A T   S+ +    L S
Sbjct: 102 SHAAFGRRTLVFIDEIHRFNKAQQDAFLPY---VEDGSIVLIGATTENPSFEINSA-LLS 157

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFAD 188
           R     V  +     + +  ++ +  A+
Sbjct: 158 R---CRVFLLKPLTPEAIATLLTRALAE 182


>gi|309777016|ref|ZP_07671985.1| replicative DNA helicase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915226|gb|EFP60997.1| replicative DNA helicase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 280

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 35/141 (24%)

Query: 50  EQAVRLIDSWPS-WPSRVVIL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96
             A R ++ W       +  L  G  G+GKS LA   ++              +   +++
Sbjct: 111 GIARRYVEHWEDMRADNIGCLFWGGVGTGKSYLAGCIANALMEKEIPVHMTNFALILNDL 170

Query: 97  AKSLDSI-----LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           A S ++       +     ++++D  +    +    Q+F++I+S ++    L++T     
Sbjct: 171 AASFENRNEYISRLCRYPLLIIDDFGMERGTEYGLEQVFNVIDSRYRSGKPLIVTT---- 226

Query: 149 VSWGVCLPDLC-------SRL 162
               + L DL        SR+
Sbjct: 227 ---NLTLDDLRNPEDTAHSRI 244


>gi|238881210|gb|EEQ44848.1| 26S protease regulatory subunit 6A [Candida albicans WO-1]
          Length = 430

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++          
Sbjct: 209 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 268

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A     + 
Sbjct: 269 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 328

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L  L S RL     ++  LP ++  E V+      R++  D     +  + + RS
Sbjct: 329 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLHCDNNSVNW--RELARS 378


>gi|37519811|ref|NP_923188.1| cell division control protein CDC48-like protein [Gloeobacter
           violaceus PCC 7421]
 gi|35210802|dbj|BAC88183.1| gll0242 [Gloeobacter violaceus PCC 7421]
          Length = 574

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 39/161 (24%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP-- 110
           R ++L GP G+GK+ LA   + ++R+   +               +++  +    R+   
Sbjct: 355 RGILLYGPPGTGKTLLARAVASQARANFIAVKGPELLSRWVGASEQAVRELFAKARQAAP 414

Query: 111 --VLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
             + +++ID L                   QL   ++ + +  + LL+ A   P      
Sbjct: 415 CVIFVDEIDTLAPERGSGGADSGVSDRVVGQLLTELDGLEEAGAVLLIGATNRPEVLDPA 474

Query: 155 LPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIF 192
           L      L+A      +KI LPD +    ++     +R + 
Sbjct: 475 L------LRAGRLDLQLKIDLPDRESRLAILRVHNRERPLA 509


>gi|303234078|ref|ZP_07320727.1| recombination factor protein RarA [Finegoldia magna BVS033A4]
 gi|302495003|gb|EFL54760.1| recombination factor protein RarA [Finegoldia magna BVS033A4]
          Length = 431

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 31/181 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +I  GP G+GK+ LA I S+++ S        SN  K +  ++   +  + + +   +
Sbjct: 53  PSMIFYGPPGTGKTTLAEIISNQTNSLFERLSAISNGVKDIREVISTAKTNLSMYNKKTV 112

Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            F ++    H  N           +  +  L+ A T    + V    L SR     ++++
Sbjct: 113 LFIDEI---HRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKA-LLSR---CQIIEL 165

Query: 171 SLPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRME---RS-LVFAEKLVDKMD 220
               D+ +  +I       K   +  I ID+K    +V       RS L   E  ++  D
Sbjct: 166 KPLTDNDIRNIIENALTEDKKLKEMNIQIDEKAIDVLVNSANGDARSALNALEIAIESTD 225

Query: 221 N 221
            
Sbjct: 226 Q 226


>gi|302380490|ref|ZP_07268955.1| recombination factor protein RarA [Finegoldia magna ACS-171-V-Col3]
 gi|302311433|gb|EFK93449.1| recombination factor protein RarA [Finegoldia magna ACS-171-V-Col3]
          Length = 431

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 31/181 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +I  GP G+GK+ LA I S+++ S        SN  K +  ++   +  + + +   +
Sbjct: 53  PSMIFYGPPGTGKTTLAEIISNQTNSLFERLSAISNGVKDIREVISTAKTNLSMYNKKTV 112

Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            F ++    H  N           +  +  L+ A T    + V    L SR     ++++
Sbjct: 113 LFIDEI---HRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKA-LLSR---CQIIEL 165

Query: 171 SLPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRME---RS-LVFAEKLVDKMD 220
               D+ +  +I       K   +  I ID+K    +V       RS L   E  ++  D
Sbjct: 166 KPLTDNDIRNIIENALTEDKKLKEMNIQIDEKAIDVLVNSANGDARSALNALEIAIESTD 225

Query: 221 N 221
            
Sbjct: 226 Q 226


>gi|221480890|gb|EEE19311.1| cell division protein, putative [Toxoplasma gondii GT1]
          Length = 963

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 35/162 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108
           R V+L G SG GK+ LA   +++  +                   +N+ +  +     + 
Sbjct: 409 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 468

Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             + +++ID +                 QL  +++ +      +++ A   P      L 
Sbjct: 469 CLLFIDEIDSIASKREKTQGEVEKRIVAQLLTLMDGVSSDKGIVVLAATNRPNQLDPALR 528

Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               R  +    ++I +PD+    +++ K      + +   +
Sbjct: 529 ----RFGRFDREIEIPIPDEKGRTEILKKKAEK--MNLGPDV 564


>gi|156373935|ref|XP_001629565.1| predicted protein [Nematostella vectensis]
 gi|156216568|gb|EDO37502.1| predicted protein [Nematostella vectensis]
          Length = 428

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 67/201 (33%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +     +    ++ A       
Sbjct: 268 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSHHDIKVIAATNRVDIL 327

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++   PD +   +++      R++ +   +    + R      
Sbjct: 328 DPAL--LRSGRLD--RKIEFPNPDQEARARILQ--IHSRKMNVSGDVNFDELSRCTDDFN 381

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A      ++   ++     T
Sbjct: 382 GAMLKAVCVEAGMIALRREAT 402


>gi|37523635|ref|NP_927012.1| putative transposase [Gloeobacter violaceus PCC 7421]
 gi|35214640|dbj|BAC92007.1| gll4066 [Gloeobacter violaceus PCC 7421]
          Length = 253

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 25/144 (17%)

Query: 32  FPRCLGISRDDLLVHSAI-EQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLA------- 81
            P    +S  D    + +  + V+ + +  +W  R   V+L GPSG GK+ LA       
Sbjct: 65  LPVGKSLSGFDFAACTKLERRRVQQLAADSTWVKRAENVLLFGPSGVGKTHLAAGVGLAM 124

Query: 82  -------NIWSDKSRSTRFS----NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LF 127
                    ++  +          N+A     + +D    V+++DI  +  ++++   LF
Sbjct: 125 VEKGIPVRYFTATNLVQLLQQAKLNLALEKQLVRLDHYPVVVIDDIGYVKRSESESSVLF 184

Query: 128 HIINSIHQYDSSLLMTARTFPVSW 151
            +I +      SL++T+      W
Sbjct: 185 ELI-AHRYERHSLVITSNHPFRDW 207


>gi|150016409|ref|YP_001308663.1| Holliday junction DNA helicase RuvB [Clostridium beijerinckii NCIMB
           8052]
 gi|189046025|sp|A6LTM7|RUVB_CLOB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149902874|gb|ABR33707.1| Holliday junction DNA helicase RuvB [Clostridium beijerinckii NCIMB
           8052]
          Length = 347

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            +L GP G GK+ LANI + +           +++           L+D D+L  ++   
Sbjct: 55  TLLYGPPGLGKTTLANIIAKEMGGDLKITSGPAIERAGELAAILTTLKDYDVLFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 113 -HRLNRNVEE 121


>gi|114047507|ref|YP_738057.1| recombination factor protein RarA [Shewanella sp. MR-7]
 gi|113888949|gb|ABI43000.1| Recombination protein MgsA [Shewanella sp. MR-7]
          Length = 443

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 64/177 (36%), Gaps = 34/177 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +  +  
Sbjct: 52  MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAQAVAQSRR 105

Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           Q   LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I     D +  +I +   D       RQ+ +   +   + Q  +     A  L++ M
Sbjct: 162 IKRLSQDEIVHIITQALTDAERGLGQRQLIMPTDVLNKLAQLCDGDARKALNLLELM 218


>gi|290980685|ref|XP_002673062.1| predicted protein [Naegleria gruberi]
 gi|284086643|gb|EFC40318.1| predicted protein [Naegleria gruberi]
          Length = 822

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP GSGK+ +A   ++++ +  F                +N+ K+ +    +
Sbjct: 249 PPRGILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESEANLRKAFEEAEKN 308

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ ++   + ++M A   P S    
Sbjct: 309 APAIIFIDEIDSIAPKREKANGEVERRIVSQLLTLMDGLNSRSNVIVMAATNRPNSIDEA 368

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+    +V+      + + +D  +
Sbjct: 369 LR----RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLDDDV 406


>gi|255761622|gb|ACU32854.1| apicoplast cell division cycle 48 protein [Toxoplasma gondii]
          Length = 1044

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 35/162 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108
           R V+L G SG GK+ LA   +++  +                   +N+ +  +     + 
Sbjct: 490 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 549

Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             + +++ID +                 QL  +++ +      +++ A   P      L 
Sbjct: 550 CLLFIDEIDSIASKREKTQGEVEKRIVAQLLTLMDGVSSDKGIVVLAATNRPNQLDPALR 609

Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               R  +    ++I +PD+    +++ K      + +   +
Sbjct: 610 ----RFGRFDREIEIPIPDEKGRTEILKKKAEK--MNLGPDV 645


>gi|119590121|gb|EAW69715.1| nuclear VCP-like, isoform CRA_b [Homo sapiens]
          Length = 687

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 128 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 187

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 188 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 247

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 248 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 287


>gi|148550570|ref|YP_001260009.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|148553832|ref|YP_001261414.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|148555379|ref|YP_001262961.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|148555958|ref|YP_001263540.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|148556293|ref|YP_001263875.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|148556386|ref|YP_001263968.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|148499022|gb|ABQ67276.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii
           RW1]
 gi|148500569|gb|ABQ68823.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii
           RW1]
 gi|148501148|gb|ABQ69402.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii
           RW1]
 gi|148501483|gb|ABQ69737.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii
           RW1]
 gi|148501576|gb|ABQ69830.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii
           RW1]
 gi|148502989|gb|ABQ71242.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii
           RW1]
          Length = 242

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 22/114 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSD---KSRSTR-----FSNIAKSLDSILIDTRKPVL--LE 114
           R ++LVG +G+GK+ LA   +    +S +          + +  +   I     +   L 
Sbjct: 99  RNIVLVGGTGTGKTHLAIAIAANVVRSGARGRYFNTVDLVTRLEEEARIGKSGALAAQLS 158

Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +DL+  ++             LFH+I+ +++  +S+++T       W     D
Sbjct: 159 RLDLIVLDELGYLPFARSGGQLLFHLISKLYE-QTSVIITTNLAFGEWPTVFGD 211


>gi|304384951|ref|ZP_07367297.1| replication-associated recombination protein A [Pediococcus
           acidilactici DSM 20284]
 gi|304329145|gb|EFL96365.1| replication-associated recombination protein A [Pediococcus
           acidilactici DSM 20284]
          Length = 439

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 34/189 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I ++K+ S    FS +  S+  I    ++     ++D      T
Sbjct: 53  MIFWGPPGVGKTTLAQIIANKTNSKFLTFSAVDSSISKIKKIMQQA----ELDREIGQKT 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  S +L+ A T   S+ V    L SR     V  +  
Sbjct: 109 LVFVDEIHRFNKSQQDAFLPYVEKGSIILIGATTENPSFEVNSA-LLSR---CKVFVLKP 164

Query: 173 PDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            +   L K+I  + ++ Q      I I++     I    +     A K ++ ++   L+ 
Sbjct: 165 LEQGDLVKLIQNVISNSQAFDNQKIKIEENQINAIANFAD---GDARKALNILEMAVLNG 221

Query: 227 GM---GITR 232
                 IT 
Sbjct: 222 KKQGEAITI 230


>gi|19173090|ref|NP_597641.1| 26S PROTEASOME REGULATORY SUBUNIT 7 [Encephalitozoon cuniculi
           GB-M1]
 gi|19168757|emb|CAD26276.1| 26S PROTEASOME REGULATORY SUBUNIT 7 [Encephalitozoon cuniculi
           GB-M1]
          Length = 415

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 48/170 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE-------- 114
           P + V+L GP G+GK+ LA   ++++ +     I   L    +     ++ E        
Sbjct: 192 PPKGVLLYGPPGTGKTLLARAVANRTNACFIRVIGSELVQKYVGEGARMVREIFAMAKGK 251

Query: 115 ------------------DIDLLDFNDTQLFHIINSIH----QYDSSLLMTARTF----P 148
                             D D  +     +  +IN +     + +  +LM         P
Sbjct: 252 KACIIFFDEVDAFGGTRFDDDDDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 311

Query: 149 VSW---------GVCLPDLCSR---LKAATVVKISLPDDDFLEKVIVKMF 186
                          LPDL  R   L+     K    D D    +I ++ 
Sbjct: 312 ALLRPGRLDRKVEFGLPDLEGRTSILR--IHAKTMSVDKDIRFDLIARLC 359


>gi|186682508|ref|YP_001865704.1| ATPase [Nostoc punctiforme PCC 73102]
 gi|186464960|gb|ACC80761.1| AAA ATPase, central domain protein [Nostoc punctiforme PCC 73102]
          Length = 607

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 39/163 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P R ++L G  G+GK+ LA   + ++R+   +               +++  +    R+ 
Sbjct: 385 PPRGILLWGSPGTGKTLLAKAIASQARANFIAVNGPELLSRWVGAAEQAVRELFRKARQA 444

Query: 111 ----VLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               V +++ID L                   QL   ++ +H+    LL+ A   P +  
Sbjct: 445 APCVVFIDEIDTLAPARGRFTGDSGVSDRVVGQLLTELDGLHECPKVLLVGATNRPEALD 504

Query: 153 VCLPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIF 192
             L      L+A      +KI LPD      ++     DR + 
Sbjct: 505 PAL------LRAGRLDLQIKIDLPDRASRLAILRVHNLDRPLV 541


>gi|328473159|gb|EGF44007.1| recombination factor protein RarA [Vibrio parahaemolyticus 10329]
          Length = 449

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            D + +   + +   D  R +          +   +        RM  SL + E L D  
Sbjct: 166 LDKEEISLALNQAINDKERGLGDTPANFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223

Query: 220 DNLALSRGMGITRSLAAEV 238
           ++ A      IT  L AEV
Sbjct: 224 EDNA-QGEKEITLKLLAEV 241


>gi|302816419|ref|XP_002989888.1| hypothetical protein SELMODRAFT_269585 [Selaginella moellendorffii]
 gi|300142199|gb|EFJ08901.1| hypothetical protein SELMODRAFT_269585 [Selaginella moellendorffii]
          Length = 805

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 243 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 302

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 303 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSID-- 360

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+      + + + + +
Sbjct: 361 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 400



 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 516 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 572


>gi|325856575|ref|ZP_08172242.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A]
 gi|325483423|gb|EGC86397.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A]
          Length = 406

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 73/194 (37%), Gaps = 27/194 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVL- 112
            IL GP G GK+ LA I + +  +  +               I ++ +    ++  P+L 
Sbjct: 41  FILWGPPGVGKTTLAQIIAHRLETPFYTLSAVTSGVKDVRDVIERAQNGRFFNSASPILF 100

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +  +  L+ A T   S+ V  P L SR     +  + 
Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEKGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152

Query: 172 LPD-DDFLEKVIVKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             + DD L  +   +  D ++    ID      +++           +++ + + A    
Sbjct: 153 PLEKDDLLTLLQRAVAEDTELKKRHIDLHETDALLRYSGGDARKLLNILELIVDAAPDGT 212

Query: 228 MGITRSLAAEVLKE 241
           + +T  +  E L++
Sbjct: 213 VTVTDRIVEERLQQ 226


>gi|331213377|ref|XP_003319370.1| protein SAV [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309298360|gb|EFP74951.1| protein SAV [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 718

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ LA+I +  + ST  +    ++ S      +  + E
Sbjct: 203 PPKGILLYGPPGTGKTHLASIIAKSTNSTLLTLSTATISSAYHGEGEQKIFE 254


>gi|302384865|ref|YP_003820687.1| ATPase AAA [Clostridium saccharolyticum WM1]
 gi|302195493|gb|ADL03064.1| AAA ATPase central domain protein [Clostridium saccharolyticum WM1]
          Length = 439

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 28/174 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122
             VI  GP G+GK+ LA + ++ + +      A       ++    ++ E  D L     
Sbjct: 53  GSVIFYGPPGTGKTTLARVIANTTSADFKQINATVAGKKDMEE---IVKEAKDSLGMYGK 109

Query: 123 DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  + +L+ A T    + V    L SR   + V ++
Sbjct: 110 KTILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPFFEVNGA-LLSR---SRVFEL 165

Query: 171 SLPDDDFLEKVIVKMFADR--QI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
              + + + ++I +   DR   +      ID+    ++          A   V+
Sbjct: 166 KPLEKEDIRELIRRAVYDRDKGMGSYHAVIDEDAEEFLADVSNGDARAALNAVE 219


>gi|254166928|ref|ZP_04873782.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289596082|ref|YP_003482778.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197624538|gb|EDY37099.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289533869|gb|ADD08216.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 727

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   ++++ +                    N+ +       +
Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIYLSGPEIMSKFYGQSEENLREIFKEAQDN 274

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 275 APSIIFIDEIDSIAPKRDEVSGEVERRVVAQLLALMDGLESRGKVVVIGATNRPNALDPA 334

Query: 155 L 155
           L
Sbjct: 335 L 335



 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 16/70 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           ++L GP G+GK+ LA   + +S +   S                 + +            
Sbjct: 492 ILLYGPPGTGKTLLAKAVATESEANFISVKGPEFLSKWVGESEKAVREVFRKARQAAPAV 551

Query: 111 VLLEDIDLLD 120
           + +++ID + 
Sbjct: 552 IFIDEIDAIA 561


>gi|120597946|ref|YP_962520.1| IstB ATP binding domain-containing protein [Shewanella sp. W3-18-1]
 gi|120558039|gb|ABM23966.1| IstB domain protein ATP-binding protein [Shewanella sp. W3-18-1]
          Length = 251

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 27/164 (16%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSG 74
           K  Q   +E QL    P       D  +V    +  +  +     W ++   V+L G SG
Sbjct: 55  KRLQRYTREAQLP---PGKPLSQFDFSVVEGINKNQLIALADQQQWVNQAENVLLFGASG 111

Query: 75  SGKSCLA------------------NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            GK+ LA                       +S     + +  +     +D    ++++DI
Sbjct: 112 VGKTHLACGIGYALLAQGVRVKFTSATHLAQSLQQAKAALVLTDVLARMDKYTVLIIDDI 171

Query: 117 DLL--DFNDTQ-LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             +     +TQ LF +I   ++   SL++T+      W     D
Sbjct: 172 GYVKKSSQETQVLFELIAHRYETG-SLIITSNQPFSGWDQIFDD 214


>gi|258539421|ref|YP_003173920.1| AAA family ATPase [Lactobacillus rhamnosus Lc 705]
 gi|257151097|emb|CAR90069.1| ATPase, AAA family [Lactobacillus rhamnosus Lc 705]
          Length = 431

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 30/189 (15%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   K      +    +   + I   +        +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +    +L+ A T      +  P + SR     + ++       
Sbjct: 102 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPTD 154

Query: 178 LEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
           +   I +  AD        Q+ +  +   Y+              ++ ++   LS     
Sbjct: 155 ISTAIDRALADNKRGLGKYQVDLTPEARDYLTHTTN---GDLRAALNGLELAVLSTPAKS 211

Query: 230 ---ITRSLA 235
              IT  L 
Sbjct: 212 DGTITIDLT 220


>gi|294501359|ref|YP_003565059.1| ATPase [Bacillus megaterium QM B1551]
 gi|294351296|gb|ADE71625.1| ATPase, AAA family [Bacillus megaterium QM B1551]
          Length = 425

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 35/198 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  + +             ++    +   +  +  +LL+++ 
Sbjct: 43  MILYGPPGVGKTTIATAIAKTTNTAFRQLNAVVNNKKDMEIVAEEAKMSGKVILLLDEVH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD              +    +L+  T      +     P + SR     + ++     
Sbjct: 103 RLDKAKQDFLLPY---LENGMIILIGATTSNPYHAIN---PAIRSR---CQIFELKSLTP 153

Query: 176 DFLEKVIVKM-------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           D ++  + +        F DR+I ++     +               ++ ++   LS G 
Sbjct: 154 DDIKIALTRALNDSSNGFGDRKIIVEDDAMNHFANSCN---GDVRSALNALELAVLSTGE 210

Query: 229 G-----ITRSLAAEVLKE 241
                 IT   A E L++
Sbjct: 211 SDGKIVITLQTAEECLQQ 228


>gi|118444048|ref|YP_877906.1| Holliday junction DNA helicase RuvB [Clostridium novyi NT]
 gi|166231486|sp|A0PZV4|RUVB_CLONN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118134504|gb|ABK61548.1| Holliday junction DNA helicase RuvB [Clostridium novyi NT]
          Length = 337

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +   T       +++           L D D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLANIIAREMGGTLKVTSGPAIERPGDMAAILTSLNDYDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 114 -HRLNRTVEE 122


>gi|159149474|gb|ABW91184.1| CDC48/PAS1/SEC28 family ATPase [Nosema bombycis]
          Length = 640

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 64/168 (38%), Gaps = 37/168 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G+GK+ +A   ++++ +  +                +N+ K+ +    +
Sbjct: 98  PPKGILLYGPPGTGKTLIAKAVANETGAFIYLINGPEIMSKMAGESENNLRKAFEEAERN 157

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID L                 QL  +++     D  +++ A   P S    
Sbjct: 158 KPAIIFMDEIDALAPKREKTQGEVERRIVSQLLTLMDGSKSRDGVIVLAATNRPNSID-- 215

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
            P L    +       ++I +PDD    +++     + ++  D  L  
Sbjct: 216 -PALR---RYGRFDREIEIGVPDDTGRLEILRIHTKNMRMAEDVDLVE 259



 Score = 41.7 bits (97), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 47/159 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PS+ V+  GP G GK+ LA   + + ++                   SN+ +  D     
Sbjct: 371 PSKGVLFYGPPGCGKTLLAKAVATECQANFISIKGPELLTMWVGESESNVRELFDRARSA 430

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               +  ++ID +  +                QL   ++ ++Q  +  ++ A   P    
Sbjct: 431 APCVLFFDEIDSVAKSRGASAGDSGSGDRVLNQLLTEMDGMNQKKNVFVIGATNRPDQLD 490

Query: 153 --------------VCLPDLCSR---LKAATVVKISLPD 174
                         + LPDL SR   LKAA       PD
Sbjct: 491 TAIMRPGRLDQLVYIPLPDLDSRLSILKAALRKTPLSPD 529


>gi|296229991|ref|XP_002760518.1| PREDICTED: nuclear valosin-containing protein-like isoform 1
           [Callithrix jacchus]
          Length = 856

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 356

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 357 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVASTARVLVIGATNRPDSL 416

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 417 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 456


>gi|295706706|ref|YP_003599781.1| ATPase, AAA family [Bacillus megaterium DSM 319]
 gi|294804365|gb|ADF41431.1| ATPase, AAA family [Bacillus megaterium DSM 319]
          Length = 425

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 35/198 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  + +             ++    +   +  +  +LL+++ 
Sbjct: 43  MILYGPPGVGKTTIATAIAKTTNTAFRQLNAVVNNKKDMEIVAEEAKMSGKVILLLDEVH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL--P 173
            LD              +    +L+  T      +     P + SR     + ++    P
Sbjct: 103 RLDKAKQDFLLPY---LENGMIILIGATTSNPYHAIN---PAIRSR---CQIFELKSLTP 153

Query: 174 DD---DFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           DD        +      F DR+I ++     +               ++ ++   LS G 
Sbjct: 154 DDIKMALTRALNDSSNGFGDRKIIVEDDAMNHFANSCN---GDVRSALNALELAVLSTGE 210

Query: 229 G-----ITRSLAAEVLKE 241
                 IT   A E L++
Sbjct: 211 SDGKIVITLQTAEECLQQ 228


>gi|302389240|ref|YP_003825061.1| Recombination protein MgsA [Thermosediminibacter oceani DSM 16646]
 gi|302199868|gb|ADL07438.1| Recombination protein MgsA [Thermosediminibacter oceani DSM 16646]
          Length = 446

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 26/142 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           +IL GP G GK+ LA I ++ +R+                  + ++ +      R  V +
Sbjct: 56  MILWGPPGVGKTTLAMIIAEMTRARFVTFSAVLSGIKEVKEVMKEAQERRRYGQRTLVFI 115

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++I   + +    F       +    +L+  T              L SR   + V  ++
Sbjct: 116 DEIHRFNKSQQDAFLPY---VEKGDIILIGATTENPSFELNSA---LLSR---SKVFVMN 166

Query: 172 LPDDDFLEKVIVKMFAD--RQI 191
               D L  ++ +   D  R +
Sbjct: 167 PLSPDDLMVLLKRALRDEERGL 188


>gi|95007473|emb|CAJ20695.1| transitional endoplasmic reticulum ATPase [Toxoplasma gondii RH]
          Length = 792

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 35/162 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108
           R V+L G SG GK+ LA   +++  +                   +N+ +  +     + 
Sbjct: 235 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 294

Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             + +++ID +                 QL  +++ +      +++ A   P      L 
Sbjct: 295 CLLFIDEIDSIASKREKTQGEVEKRIVAQLLTLMDGVSSDKGIVVLAATNRPNQLDPALR 354

Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               R  +    ++I +PD+    +++ K      + +   +
Sbjct: 355 ----RFGRFDREIEIPIPDEKGRTEILKKKAEK--MNLGPDV 390


>gi|253682370|ref|ZP_04863167.1| holliday junction DNA helicase RuvB [Clostridium botulinum D str.
           1873]
 gi|253562082|gb|EES91534.1| holliday junction DNA helicase RuvB [Clostridium botulinum D str.
           1873]
          Length = 337

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +   T       +++           L D D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLANIIAREMGGTLKVTSGPAIERAGDMAAILTSLNDYDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 114 -HRLNRTVEE 122


>gi|263098|gb|AAB24840.1| Tat binding protein 1, TBP-1=transcriptional activator [human,
           Peptide, 439 aa]
          Length = 439

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 64/167 (38%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q ++ + ++ A       
Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++  +P+++   +++      R++ +   +
Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDV 379


>gi|331269239|ref|YP_004395731.1| Holliday junction DNA helicase RuvB [Clostridium botulinum
           BKT015925]
 gi|329125789|gb|AEB75734.1| Holliday junction DNA helicase RuvB [Clostridium botulinum
           BKT015925]
          Length = 337

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +   T       +++           L D D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLANIIAKEMGGTLKVTSGPAIERAGDMAAILTSLNDYDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 114 -HRLNRTVEE 122


>gi|83949758|ref|ZP_00958491.1| ATPase, AAA family protein [Roseovarius nubinhibens ISM]
 gi|83837657|gb|EAP76953.1| ATPase, AAA family protein [Roseovarius nubinhibens ISM]
          Length = 437

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 67/195 (34%), Gaps = 37/195 (18%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            +     +IL GP G GK+ +A + + ++     + S I   +  +     +      + 
Sbjct: 52  ENGSLGSLILWGPPGVGKTTIARLLAAETDLHFVQISAIFTGVPELRKVFEEA----RMR 107

Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163
             +   T LF    H  N   Q          ++L+   T              L SR  
Sbjct: 108 HGNGRGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LLSR-- 162

Query: 164 AATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD---- 217
            A V+ +    +  LE+++ +     DR + +  +    ++   +        LV+    
Sbjct: 163 -AQVLVLERLANRDLERLVQRAEKMMDRALPLTGEAREVLLDMADGDGRALLNLVEQVMA 221

Query: 218 -----KMDNLALSRG 227
                K+D  ALS+ 
Sbjct: 222 WKSAQKLDPEALSKR 236


>gi|168187974|ref|ZP_02622609.1| holliday junction DNA helicase RuvB [Clostridium botulinum C str.
           Eklund]
 gi|169294185|gb|EDS76318.1| holliday junction DNA helicase RuvB [Clostridium botulinum C str.
           Eklund]
          Length = 337

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +   T       +++           L D D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLANIIAREMGGTLKVTSGPAIERPGDMAAILTSLNDYDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 114 -HRLNRTVEE 122


>gi|319426954|gb|ADV55028.1| IstB domain protein ATP-binding protein [Shewanella putrefaciens
           200]
          Length = 252

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 22/119 (18%)

Query: 61  SW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104
            W    + V+L+GP+G+GK+ LA  +++++   +   +   + ++L              
Sbjct: 96  DWIRAHQHVLLIGPTGTGKTTLACAFANEAIQQQIPVLFFRMANLLLQLVAARNENTLNK 155

Query: 105 ----IDTRKPVLLEDI--DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
               I     ++L+D    L+   +  LF  +        SL++T++    +W     D
Sbjct: 156 LARKIARAPLLVLDDWGNALMSSEERHLFFELIEARDQQGSLMITSQYPVTTWHETFQD 214


>gi|302770437|ref|XP_002968637.1| hypothetical protein SELMODRAFT_145748 [Selaginella moellendorffii]
 gi|300163142|gb|EFJ29753.1| hypothetical protein SELMODRAFT_145748 [Selaginella moellendorffii]
          Length = 809

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 247 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 307 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDPA 366

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+    +V+      + + + + +
Sbjct: 367 LR----RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 404



 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 520 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 576


>gi|255634909|gb|ACU17813.1| unknown [Glycine max]
          Length = 392

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 35/150 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P + V+L GP G+GK+ LA   + +S +   +                 +A         
Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 177

Query: 107 TRKPVLLEDIDLLDFNDTQLFH--IINS------------IHQYDSSLLMTARTFPVSWG 152
               + ++++D          H  ++N               Q    +++TA   P    
Sbjct: 178 QPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLTATNRPSELD 237

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             +  L  RL  A   +I +PD     +++
Sbjct: 238 EAI--LR-RLPQA--FEIGVPDQRERTEIL 262


>gi|238018960|ref|ZP_04599386.1| hypothetical protein VEIDISOL_00820 [Veillonella dispar ATCC 17748]
 gi|237864444|gb|EEP65734.1| hypothetical protein VEIDISOL_00820 [Veillonella dispar ATCC 17748]
          Length = 433

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 30/157 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++  GP G+GK+ LA I +  S S   +    + ++ + + R   ++ED      +  
Sbjct: 51  PSMLFYGPCGTGKTTLAGIIAKVSNSHFVN--LNATNAGIGELRN--IIEDARKRVRSLQ 106

Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           Q   LF    H  N           +  + +L+ A T    + V  P L SRL+   ++ 
Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199
           +       + +++ +   D       R + +  ++  
Sbjct: 163 LEALTPKAIGQILRRAITDEEVGLGKRHLQVTDEVLE 199


>gi|168334208|ref|ZP_02692411.1| AAA ATPase central domain protein [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 420

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 73/209 (34%), Gaps = 51/209 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------------RSTRFSNIAKSLDSILIDTRKPVLL 113
           +I  GP GSGK+ +A + +  +             ++     +  + DS+   ++  ++ 
Sbjct: 53  MIFYGPPGSGKTTIAKVIAKTTTSHFETLNATTSGKADILRLVQNAKDSLATSSKHTIIF 112

Query: 114 EDIDLLDFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
                   ++    H  N           +  + +L+ A T    + V    L SR   +
Sbjct: 113 -------IDEI---HRFNKAQQDALLPYAEDGTIILIGATTENPYFEVNRA-LLSR---S 158

Query: 166 TVVKISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            + ++    ++ +  ++ +   D           +  + A +I          A   ++ 
Sbjct: 159 LIFELHSLTNENIITILQRAITDTDKGLGVYNAILTDQAAEFIATHA---AGDARAALNA 215

Query: 219 MDNLALSRGM------GITRSLAAEVLKE 241
           ++   L+          IT  +A+E +++
Sbjct: 216 LELATLTTERSADGKINITAQVASECMQK 244


>gi|170036949|ref|XP_001846323.1| spermatogenesis associated factor [Culex quinquefasciatus]
 gi|167879951|gb|EDS43334.1| spermatogenesis associated factor [Culex quinquefasciatus]
          Length = 797

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 228 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 287

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 288 SPAIIFIDEIDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSAHVIVMAATNRPNSIDPA 347

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 348 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLADDVDLEQI----AAESHGHVGA 400

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 401 DLASLC------SEAALQQIREKMD 419



 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 501 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 557


>gi|168058314|ref|XP_001781154.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667391|gb|EDQ54022.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 815

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 70/191 (36%), Gaps = 42/191 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 247 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 307 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 366

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           L     R  +    + I +PD+    +V+      + + + + +       +ER      
Sbjct: 367 LR----RFGRFDREIDIGVPDEVGRLEVV--RIHTKNMKLAEDV------NLERIAHDTH 414

Query: 214 KLVDKMDNLAL 224
             V   D  AL
Sbjct: 415 GFVGA-DLAAL 424



 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 520 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 576


>gi|160947516|ref|ZP_02094683.1| hypothetical protein PEPMIC_01450 [Parvimonas micra ATCC 33270]
 gi|158446650|gb|EDP23645.1| hypothetical protein PEPMIC_01450 [Parvimonas micra ATCC 33270]
          Length = 428

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 89/237 (37%), Gaps = 35/237 (14%)

Query: 1   MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60
           M+L K +Y+ F     K    + + + L F       I +D+++          +I +  
Sbjct: 1   MDLFKMNYNLF-SKLSKPLAERMRPKDLSF------FIGQDNII--KNNSVLKNMIKNNR 51

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
                 +IL GP GSGK+ LANI S  + +      A +  +  I     +  +++ + +
Sbjct: 52  ---FSSMILYGPPGSGKTSLANIISSTTDNYFVKISAVTSGTKEIKEIIELAKDNLSMYN 108

Query: 121 FNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
              T LF    H  N +         +    + + A T   ++ V    L SR     V 
Sbjct: 109 KR-TILFIDEIHRFNKMQQDYLLEFVEKGDIIFIGATTENPAYEVNNA-LLSR---VIVF 163

Query: 169 KISLPDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           ++     + L+ +I           +++I   +   +Y+++        A   ++ +
Sbjct: 164 ELQALSFENLKDIIDNAILNDEFLKNKKISYTEDGISYLIKMSNGDARTALNYLELI 220


>gi|68060549|ref|XP_672260.1| 26S protease subunit regulatory subunit 6a [Plasmodium berghei
           strain ANKA]
 gi|56489176|emb|CAH99786.1| 26S protease subunit regulatory subunit 6a, putative [Plasmodium
           berghei]
          Length = 379

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 58/153 (37%), Gaps = 36/153 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++ +T        L  + I     ++          
Sbjct: 228 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 287

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +                  +  ++N +     D ++ ++ A   P + 
Sbjct: 288 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDETVKVIAATNRPDTL 347

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIV 183
              L  L S RL     +++  P+++   +++ 
Sbjct: 348 DPAL--LRSGRLD--RKIELPHPNEESRARILQ 376


>gi|330466933|ref|YP_004404676.1| recombination factor protein RarA [Verrucosispora maris AB-18-032]
 gi|328809904|gb|AEB44076.1| recombination factor protein RarA [Verrucosispora maris AB-18-032]
          Length = 503

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 28/172 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD----SILIDTRK----------PVL 112
           VIL GP GSGK+ +A++ +  +     +  A S        +IDT +           + 
Sbjct: 74  VILWGPPGSGKTTIAHLVAAATDRRFVAMSALSAGVKDVRAVIDTARRQRRSGGPPTVLF 133

Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++++          L     +  +  +  L+ A T    + V  P L SR     ++ + 
Sbjct: 134 IDEVHRFSKTQQDSLL----AAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 185

Query: 172 LPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDK 218
             DD  +  ++ +   D R     + +D +   ++V+     +  A   ++ 
Sbjct: 186 PLDDAAVRGLLRRAMTDERGLAGALTLDSEAEDHLVRLAGGDVRKALTALEA 237


>gi|325113217|ref|YP_004277163.1| putative transposase-associated ATP-binding protein [Acidiphilium
           multivorum AIU301]
 gi|325052684|dbj|BAJ83021.1| putative transposase-associated ATP-binding protein [Acidiphilium
           multivorum AIU301]
          Length = 269

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 29/166 (17%)

Query: 19  DQPKNKEEQLFFS--FPRCLGISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVILVGP 72
           D+ + + E+       P    +   D     ++  A   A+   ++W    +  ++  GP
Sbjct: 56  DRERRRIERHLLEAHLPIGKTLDNFDFNAVPVISKAHITALASGNAWIEHGANCLV-FGP 114

Query: 73  SGSGKSCLAN-------------IWSDKSR-----STRFSNIAKSLDSILIDTRKPVLLE 114
            G GKS LA+             +++  +           ++A       +D    ++L+
Sbjct: 115 PGVGKSHLASGLGRALIEAGFRVLFARTTDLVQRLQVARQDLALEAAITKLDRYHLLILD 174

Query: 115 DIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           DI  +  +  +   LF +I+  +++  S+++TA      W    PD
Sbjct: 175 DISYVTKDQAETSVLFELISRRYEH-RSIMITANQAFGEWNKIFPD 219


>gi|161506521|ref|YP_001573642.1| IstB ATP binding domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|161522745|ref|YP_001585674.1| IstB ATP binding domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189348401|ref|YP_001941597.1| ISBmu7a transposase [Burkholderia multivorans ATCC 17616]
 gi|189348816|ref|YP_001942011.1| ISBmu7a transposase [Burkholderia multivorans ATCC 17616]
 gi|160346298|gb|ABX19382.1| IstB domain protein ATP-binding protein [Burkholderia multivorans
           ATCC 17616]
 gi|160346759|gb|ABX19842.1| IstB domain protein ATP-binding protein [Burkholderia multivorans
           ATCC 17616]
 gi|189338539|dbj|BAG47607.1| ISBmu7a transposase [Burkholderia multivorans ATCC 17616]
 gi|189338954|dbj|BAG48021.1| ISBmu7a transposase [Burkholderia multivorans ATCC 17616]
          Length = 283

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 37/164 (22%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLANIW---- 84
           F F           +V  A   A+   D W  +  +  +IL+GPSG GKS L++      
Sbjct: 78  FDFDAVP-------MVSRAHVSALCAGDGWLRNGTN--LILLGPSGGGKSHLSSAIGLSL 128

Query: 85  ------------SDKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LF 127
                       +D  +  + +    +L+S +  +D    V+L+D   +  +  +   LF
Sbjct: 129 LEKGWKVLFARTTDLVQRLQVARRELALESAINRLDRFDLVVLDDFAYVSKDQAETSVLF 188

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            +I S      SL +TA      W    PD     +A TV  + 
Sbjct: 189 ELI-SARYERRSLCITANQPFGEWDKVFPD-----RAMTVAAVD 226


>gi|257439846|ref|ZP_05615601.1| replication-associated recombination protein A [Faecalibacterium
           prausnitzii A2-165]
 gi|257197755|gb|EEU96039.1| replication-associated recombination protein A [Faecalibacterium
           prausnitzii A2-165]
          Length = 424

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 35/202 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112
             +I  GPSG+GK+ +A I ++ S  T                + K + ++       + 
Sbjct: 40  PNMIFYGPSGTGKTTVARIIAENSGMTLHKLNGTSCGTGDIKAVLKDIGTLAGAGGILLY 99

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-- 169
           L++I  L+      L   I    +  +  L+ + T    + +    L SR    TV +  
Sbjct: 100 LDEIQYLNKKQQQSLLECI----EDGTVTLIASTTENPYFYIYNA-LLSR---CTVFEFK 151

Query: 170 -ISLPD-DDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            ++  D +  L   + K+       I ++    AY+    E +     K +  +D    +
Sbjct: 152 SLTAADVEQGLRNALKKLSESEGTPIRMEDDACAYLA---ESAGGDLRKALGCLDFAVTA 208

Query: 226 -----RGMGITRSLAAEVLKET 242
                 G  IT  +  +V + T
Sbjct: 209 AAPEPEGKHITLDMIQQVTRRT 230


>gi|255932063|ref|XP_002557588.1| Pc12g07530 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582207|emb|CAP80380.1| Pc12g07530 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 956

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 69/196 (35%), Gaps = 43/196 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------- 109
             ++L GP G+GK+ LA   + +S +T        +  + +   +               
Sbjct: 685 PGLLLYGPPGTGKTLLAKAVARESGATVLEVSGSEVYDMYVGEGEKNVKAIFTLAKKLSP 744

Query: 110 -PVLLEDIDLL----DFNDTQLFH--IINSI-HQYDS-----SLLMTARTFPVSWGVCLP 156
             V +++ D +        ++  H  +IN    ++D      + +M A   P      L 
Sbjct: 745 CVVFIDEADAIFCSRTGASSRTSHRELINQFLREWDGMNDLSAFIMVATNRP----FDLD 800

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---------R 207
           D     +    + + LP ++  E V+     + Q+     LA  + +R            
Sbjct: 801 DAVL-RRLPRRLLVDLPTEEDREAVLRIHLKEEQLEPSVDLAE-LARRTPLYSGSDLKNL 858

Query: 208 SLVFAEKLVDKMDNLA 223
           S+  A   V + ++ A
Sbjct: 859 SVAAALACVREENDAA 874


>gi|325205964|gb|ADZ01417.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M04-240196]
          Length = 436

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|302866794|ref|YP_003835431.1| AAA ATPase central domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569653|gb|ADL45855.1| AAA ATPase central domain protein [Micromonospora aurantiaca ATCC
           27029]
          Length = 532

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFND 123
           VIL GP GSGK+ +A++ +  +     +  A +     +      ++E            
Sbjct: 107 VILWGPPGSGKTTIAHLVARATDRRFVAMSALTAGVKDVRA----VIETARRQRRSGGPP 162

Query: 124 TQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  +        +  +  +  L+ A T    + V  P L SR     ++ + 
Sbjct: 163 TVLFIDEVHRFSKTQQDSLLAAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 218

Query: 172 LPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203
             DDD +  ++ +  AD R     + + ++   ++V+
Sbjct: 219 ALDDDDVRGLLRRAVADERGLGGALVLAEEAEDHLVR 255


>gi|297584737|ref|YP_003700517.1| AAA ATPase central domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297143194|gb|ADH99951.1| AAA ATPase central domain protein [Bacillus selenitireducens MLS10]
          Length = 443

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 71/180 (39%), Gaps = 31/180 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA + ++ + +   + + +   +  +     +     D D      T
Sbjct: 54  MIFHGPPGTGKTTLAKVIANTTAAAFEQLNAVTAGIKDVREMVSQAKSRLDYDHKR---T 110

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V  P L SR   + + ++ L
Sbjct: 111 VLFIDEIHRFNKGQQDALLPHVEDGTVILIGATTENPMFEVN-PALISR---SRLFRLEL 166

Query: 173 PDDDFLEKVIV-------KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             D  + KV+        + F D Q+   ++   +I   ++ +   A   ++ ++   L+
Sbjct: 167 LSDGDMRKVLEHALNDAKRGFGDYQVSFSEEAFNHI---IDVAGGDARTALNALELAVLT 223


>gi|119500324|ref|XP_001266919.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119415084|gb|EAW25022.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 539

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 37/219 (16%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94
           LV         LI+         +IL G +G+GK+ +A + +    S             
Sbjct: 139 LVGP-NGVLRGLIEQDR---VPSMILWGHAGTGKTTIARVIASMVGSRFVEINSTSTGVA 194

Query: 95  ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                 A++   + +  RK ++  ++I     +   +F       +     L+ A T   
Sbjct: 195 ECKKIFAEARSELGLTGRKTIVFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENP 251

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQ 203
           S+ V    L SR        +S   D+ +  ++ +              +D +L  Y+ +
Sbjct: 252 SFKVQNA-LLSR---CRTFTLSKLSDEDVRSILDRALRVEGPNYSPSSIVDDELIEYLAR 307

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +     A   ++ ++             +  E LK +
Sbjct: 308 FSD---GDARTSLNLLELAMDLSKRP---RMTKEELKRS 340


>gi|56479430|ref|YP_161019.1| recombination factor protein RarA [Aromatoleum aromaticum EbN1]
 gi|56315473|emb|CAI10118.1| predicted ATPase related to the uncharacterized helicase subunit of
           the holliday junction resolvase [Aromatoleum aromaticum
           EbN1]
          Length = 446

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +    +   +  A    S + D R+ V     +      T L
Sbjct: 52  MILWGPPGVGKTTLARLMAQAFDAEFIALSAVF--SGVKDIREAVAHAQTEKARGRHTIL 109

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +     L+ A T   S+ V    L SR   A V  +   D
Sbjct: 110 FVDEVHRFNKAQQDAFLPYVEQGVVTLIGATTENPSFEVNSA-LLSR---AAVYVLEPLD 165

Query: 175 DDFLEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGIT 231
           D+   ++    ++ A  Q+         ++   +        L++++   A + G + +T
Sbjct: 166 DEAQGELFERARLLACPQLEFAPAARERMIGFADGDARRLMNLIEQVQVAAETAGVVTVT 225

Query: 232 RSLAAEVL 239
                E L
Sbjct: 226 PEFVDEAL 233


>gi|325204241|gb|ADY99694.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis
           M01-240355]
          Length = 436

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 26/195 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R  +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             D L+K+I K+ A    R   I+      +V   +        L++++   A +R +  
Sbjct: 163 SSDGLKKLIAKVLALPEYRDFTIEADAQELLVNTADGDARRLLNLLEQLLRAADTRRLK- 221

Query: 231 TRSLAAEVLKETQQC 245
             +L AE L ++   
Sbjct: 222 --TLTAEFLADSLGA 234


>gi|295695736|ref|YP_003588974.1| AAA ATPase central domain protein [Bacillus tusciae DSM 2912]
 gi|295411338|gb|ADG05830.1| AAA ATPase central domain protein [Bacillus tusciae DSM 2912]
          Length = 472

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 30/162 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLD--FND 123
           VI  GP G GK+ LA + +  +RS   +  A +     +      +++D  D L      
Sbjct: 55  VIFYGPPGVGKTTLARLIAGYTRSVFVTLSAVTAGIADLRR----VVDDARDRLGMYGQK 110

Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N           +    +L+ A T    + V    L SR   + V  + 
Sbjct: 111 TTLFIDEIHRFNKAQQDALLPHMEDGLVILIGATTENPYFEVNKA-LLSR---SLVFALR 166

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRME 206
               + L+ +  +  AD  R      + + ++   + V+  E
Sbjct: 167 PLTPEALKTIARRAIADKERGLGTMPLEVHEEALDHWVRYCE 208


>gi|261403255|ref|YP_003247479.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
 gi|261370248|gb|ACX72997.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
          Length = 371

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 34/170 (20%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108
            W  + V+  GP G+GK+ +A   + ++                  + +K +  +     
Sbjct: 151 DWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQKAS 210

Query: 109 K----PVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     V ++++D +  +                L   ++ I + +  + + A   P   
Sbjct: 211 ENAPCVVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAML 270

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
              +    SR +     K+  PDD    K++        I I   L  ++
Sbjct: 271 DSAI---RSRFEEEIEFKL--PDDKERLKIMELYAKKMPIPIKANLKEFV 315


>gi|163752528|ref|ZP_02159714.1| ATPase, AAA family protein [Shewanella benthica KT99]
 gi|161327583|gb|EDP98781.1| ATPase, AAA family protein [Shewanella benthica KT99]
          Length = 443

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 33/195 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++  GP G+GK+ LA + +  + +   R S +   +  I          +++       T
Sbjct: 52  MLFWGPPGTGKTTLAELVAHYANAHVERISAVTSGVKEIRTAIEHA---KNVAESRGQRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A V  I
Sbjct: 109 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFVGATTENPSFEINNA---LLSR---ARVYLI 162

Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               +D + +++ +   D       RQ+ I   +A  +    +     A  L++ M ++ 
Sbjct: 163 KRLTNDEIIQIVRQALIDNDRGLGKRQLKIPDAVAEKLANVCDGDARKALNLIELMSDM- 221

Query: 224 LSRGMGITRSLAAEV 238
           ++ G   T  +  EV
Sbjct: 222 IADGESFTEQMIIEV 236


>gi|156538268|ref|XP_001602992.1| PREDICTED: similar to werner helicase interacting protein [Nasonia
           vitripennis]
          Length = 522

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 26/150 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +IL GP G GK+ LAN+ ++          R+  ++ ++  I  D +  + +   +L 
Sbjct: 146 PNIILWGPPGCGKTSLANVIANTCQHCPGGKYRYVKLSAAMSGI-SDVKDAITIASNELK 204

Query: 120 DFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAA 165
               T +F    H  N           +  + +L+  T      S       L SR    
Sbjct: 205 FGRRTVMFMDEIHRFNKTQQDTFLPHIESGTIILIGATTENPSFSLNAA---LLSR---C 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
            V+ +     + L +++++        +  
Sbjct: 259 RVIVLEKLTIENLTEILIRAIKAAGGAVHD 288


>gi|156974088|ref|YP_001444995.1| recombination factor protein RarA [Vibrio harveyi ATCC BAA-1116]
 gi|156525682|gb|ABU70768.1| hypothetical protein VIBHAR_01799 [Vibrio harveyi ATCC BAA-1116]
          Length = 451

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 34/197 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 56  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 113

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 114 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 167

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-----------SLVFAEKLVDKMDN 221
            D D +   + +  +D++  +    A ++   ++R           SL + E L D  ++
Sbjct: 168 LDKDEISLALNQAISDKERGLGNTPAHFVDNVLDRLAELVNGDARMSLNYLELLYDMAED 227

Query: 222 LALSRGMGITRSLAAEV 238
            A      IT  L AEV
Sbjct: 228 NAKGEK-EITLKLLAEV 243


>gi|300856545|ref|YP_003781529.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436660|gb|ADK16427.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 348

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 13/94 (13%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
            +  +   +    +D         V+L GP G GK+ LANI + +           +++ 
Sbjct: 42  FIEAARNRK--EALDH--------VLLYGPPGLGKTTLANIIAVEMGGNLKITSGPAIER 91

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136
                     L D+D+L  ++    H +N   + 
Sbjct: 92  AGDLAAILTSLNDMDVLFIDEI---HRLNRSVEE 122


>gi|229552006|ref|ZP_04440731.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314583|gb|EEN80556.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
           LMS2-1]
          Length = 462

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 30/189 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 73  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 132

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +    +L+ A T      +  P + SR     + ++       
Sbjct: 133 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPTD 185

Query: 178 LEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
           +   I +  AD        Q+ +  +   Y+              ++ ++   LS     
Sbjct: 186 ISTAIDRALADNKRGLGKYQVDLTPEARDYLTHTTN---GDLRAALNGLELAVLSTPAKS 242

Query: 230 ---ITRSLA 235
              IT  L 
Sbjct: 243 DGTITIDLT 251


>gi|224003485|ref|XP_002291414.1| 26S proteasome ATPase regulatory subunit [Thalassiosira pseudonana
           CCMP1335]
 gi|220973190|gb|EED91521.1| 26S proteasome ATPase regulatory subunit [Thalassiosira pseudonana
           CCMP1335]
          Length = 427

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 65/189 (34%), Gaps = 44/189 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   ++++ +         L  + I     ++          
Sbjct: 201 PPKGVLLHGPPGTGKTLLARACANQTNAVFLKLAGPQLVQMFIGDGAKLIRDAFELAKEK 260

Query: 113 ------------LEDIDLL-----DFNDT----------QLFHIINSIHQYDSSLLMTAR 145
                       ++++D +       + +          +L   ++     D   ++ A 
Sbjct: 261 IADGTSNGAIIFIDELDAIGTKRFGGDQSGDREVQRTMLELLSQLDGFGSNDMIKVIAAT 320

Query: 146 TFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
             P      L  L S RL     +++  P ++   K++      R++ +  ++    + R
Sbjct: 321 NRPDVLDPAL--LRSGRLD--RKIELPHPSEEARSKIM--RIHSRKMNVSPEVVFEELAR 374

Query: 205 MERSLVFAE 213
                  A+
Sbjct: 375 SCEDFNGAQ 383


>gi|220908139|ref|YP_002483450.1| recombination factor protein RarA/unknown domain fusion protein
           [Cyanothece sp. PCC 7425]
 gi|219864750|gb|ACL45089.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7425]
          Length = 731

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 25/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + ++ +++   +  A  + + + + R  V            T L
Sbjct: 48  LIFYGPPGTGKTTLARMIANTTQAYFIAINA--VLAGVKEIRAAVETAQTHQQLRQRTIL 105

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + + ++    
Sbjct: 106 FVDEVHRFNKAQQDALLPWVENGTLILIGATTENPYFEVNKA-LVSR---SRIFQLKPLS 161

Query: 175 DDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +  L +V  +   DR       ++ ++    A++V             ++
Sbjct: 162 EQDLYQVAFQALHDRERGYGNLKVRVEDDALAHLVNVANGDARALLNALE 211


>gi|156743910|ref|YP_001434039.1| IstB ATP binding domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156235238|gb|ABU60021.1| IstB domain protein ATP-binding protein [Roseiflexus castenholzii
           DSM 13941]
          Length = 263

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 31/136 (22%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           A+        W    +IL G  G GK+ LA   +++     +  +   +  +L       
Sbjct: 100 ALEYARQPRGW----LILFGNYGCGKTHLAAAIANQLIQNHYRVLFAVVPDLLDHLRSTF 155

Query: 105 --------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         I     ++L+D+   +   +   +LF IIN  + +    ++T+   
Sbjct: 156 GPSSEIEYDQRFEDIREADVLILDDLGTENTTSWAREKLFQIINHRYNFALPTVITSNRK 215

Query: 148 PVSWGVCLPDLCSRLK 163
           P       P + SR+ 
Sbjct: 216 PEEID---PRIFSRMS 228


>gi|172058090|ref|YP_001814550.1| ATPase central domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171990611|gb|ACB61533.1| AAA ATPase central domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 437

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 28/174 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             VI  GP G+GK+ LA + S   KS   + + +   LD +    +     E     D  
Sbjct: 49  GTVIFYGPPGTGKTTLARVISSYTKSAFEQLNAVTAKLDQLREVLKAA---ESRLQFDQQ 105

Query: 123 DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  +  L+ A T   S+ V    L SR   ATV + 
Sbjct: 106 KTILFLDEIHRFNKMQQDALLPALEAGTITLIGATTENPSFEVNAA-LLSR---ATVFRF 161

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
             P  + L  V+ +   D  R +      + ++   + V+  +         ++
Sbjct: 162 ETPTTEDLRVVLHRTLHDTERGLGKYPITVTEEAVDHYVKLSDGDYRALLNALE 215


>gi|327400638|ref|YP_004341477.1| AAA family ATPase [Archaeoglobus veneficus SNP6]
 gi|327316146|gb|AEA46762.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6]
          Length = 734

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 63/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ +A   +++  +   S               + L  I  + ++ 
Sbjct: 214 PPKGVLLYGPPGTGKTLIAKAVANEVNAHFISISGPEIMSKYYGESEQRLREIFEEAKEN 273

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 274 APSIIFIDEIDSIAPKREEVTGEVERRVVAQLLALMDGLEARGDVIVIAATNRPDALD-- 331

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD +  ++++      R + + + +
Sbjct: 332 -PALRRPGRFDREIEIGVPDREGRKEILE--IHTRGMPLAEDV 371



 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GK+ LA   +++S +   S     L
Sbjct: 489 PPKGILLFGPPGTGKTLLAKAVANESNANFISVKGPEL 526


>gi|326772947|ref|ZP_08232231.1| ATPase, AAA family [Actinomyces viscosus C505]
 gi|326637579|gb|EGE38481.1| ATPase, AAA family [Actinomyces viscosus C505]
          Length = 477

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 28/174 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           +IL GP G GK+ +A + +D++       S  FS +A  L  +     +   +    LL 
Sbjct: 69  IILWGPPGCGKTTIARLLADRTGLVFEQVSATFSGVA-DLRKVFTAAARRREIGQGTLLF 127

Query: 121 FNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            ++    H  N           +  + +L+  T              L SR     V+ +
Sbjct: 128 VDEI---HRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNGA---LLSR---CQVMVL 178

Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
              D+  L +++ +  +   R + + +     ++   +    +   +V+++   
Sbjct: 179 RRLDEAALTELLARAESLTGRSLALTEDARTALLSMADGDGRYLLGMVEQVLAA 232


>gi|218194514|gb|EEC76941.1| hypothetical protein OsI_15211 [Oryza sativa Indica Group]
          Length = 461

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + V+L GP G+GK+ +A+ ++ ++ +T        L  I+      V+
Sbjct: 147 PPKGVLLYGPPGTGKTLVAHAFASQTNATFLKLTGPQLAVIIFRPIAGVV 196



 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A+ ++ ++ +T        L   LI     ++ +
Sbjct: 251 PPKGVLLYGPPGTGKTLVAHAFASQTNATFLKLTGPQLAVKLIGEGARLVRD 302


>gi|159029290|emb|CAO90156.1| ftsH3 [Microcystis aeruginosa PCC 7806]
          Length = 625

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 77/217 (35%), Gaps = 53/217 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEAGVAFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCI 264

Query: 111 VLLEDIDLL----------DFNDT------QLFHIINSIHQYDSSL-LMTARTFPVSWGV 153
           + ++++D +            ND       QL   ++  +  D+++ ++ A   P +   
Sbjct: 265 IFIDELDAIGKSRANGNFMGGNDEREQTLNQLLTEMDGFNAGDATVIVLAATNRPETLDP 324

Query: 154 CL--------------PDLCSRLKAATVV--KISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            L              PDL  RLK   +   K+ L  D  L+++  +        +   +
Sbjct: 325 ALLRPGRFDRQVLVDRPDLAGRLKILEIYAGKVKLGSDADLKQIATRTPGFAGADLANLV 384

Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230
             AA +  R +RS V  E   + ++     L +   +
Sbjct: 385 NEAALLAARNQRSTVAQEDFNEAIERVVAGLEKKSRV 421


>gi|103485925|ref|YP_615486.1| IstB-like ATP-binding protein [Sphingopyxis alaskensis RB2256]
 gi|103486339|ref|YP_615900.1| IstB-like ATP-binding protein [Sphingopyxis alaskensis RB2256]
 gi|98976002|gb|ABF52153.1| IstB-like ATP-binding protein [Sphingopyxis alaskensis RB2256]
 gi|98976416|gb|ABF52567.1| IstB-like ATP-binding protein [Sphingopyxis alaskensis RB2256]
          Length = 242

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 22/114 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSD---KSRSTR-----FSNIAKSLDSILIDTRKPVL--LE 114
           R ++L+G +G+GK+ LA   +    ++ +          + +  +   I     +   L 
Sbjct: 99  RNIVLIGGTGTGKTHLATAITASVVRAGARGRYFNTVDLVTRLEEEARIGKAGSIAAQLG 158

Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +DL+  ++             LFH+I+ +++  +S+++T       W     D
Sbjct: 159 RLDLVVLDELGYLPFARSGGQLLFHLISKLYE-QTSVIITTNLAFGEWPTVFGD 211


>gi|320101443|ref|YP_004177035.1| proteasome-activating nucleotidase [Desulfurococcus mucosus DSM
           2162]
 gi|319753795|gb|ADV65553.1| Proteasome-activating nucleotidase [Desulfurococcus mucosus DSM
           2162]
          Length = 405

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ LA   + +S +T  + +   L    I     ++ E
Sbjct: 171 PPKGVLLYGPPGCGKTLLAKAVAAESNATFIAIVGSELVQKFIGEGARIVRE 222


>gi|315605005|ref|ZP_07880059.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315313284|gb|EFU61347.1| replication-associated recombination protein A [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 457

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 27/183 (14%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
            +I++  +     +I  GP G GK+ LA + +  + ++     A +  S + + R+ +  
Sbjct: 47  SMIEADRT---PSMIFWGPPGVGKTTLARVIARHTHASFIDFSAVT--SGIKEIREVMKQ 101

Query: 114 EDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR 161
            D      + T +F    H  N           +  + +L+ A T   S+ V    L SR
Sbjct: 102 ADAQASMGSRTIVFVDEIHRFNKAQQDAFLPFVEKGAIILIGATTENPSFEVNNA-LLSR 160

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD-RQ-----IFIDKKLAAYIVQRMERSLVFAEKL 215
                V  ++   ++ L  ++ +   D R      + I+  L   I    +     A   
Sbjct: 161 ---CKVFVLNGLTEEDLVGLMRRALTDPRGFGNQDVRIEDDLLRAIATFADGDARVALST 217

Query: 216 VDK 218
           ++ 
Sbjct: 218 LEM 220


>gi|303388783|ref|XP_003072625.1| 26S proteasome regulatory subunit 7 [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303301766|gb|ADM11265.1| 26S proteasome regulatory subunit 7 [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 415

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 43/142 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE-------- 114
           P + V+L GP G+GK+ LA   ++++ +     I   L    +     ++ E        
Sbjct: 192 PPKGVLLYGPPGTGKTLLARAVANRTNACFIRVIGSELVQKYVGEGARMVREIFAMAKGK 251

Query: 115 ------------------DIDLLDFNDTQLFHIINSIH----QYDSSLLMTARTF----P 148
                             D D  +     +  +IN +     + +  +LM         P
Sbjct: 252 KACIIFFDEVDAFGGTRFDDDDDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 311

Query: 149 VSW---------GVCLPDLCSR 161
                          LPDL  R
Sbjct: 312 ALLRPGRLDRKVEFGLPDLEGR 333


>gi|217077920|ref|YP_002335638.1| Holliday junction DNA helicase RuvB [Thermosipho africanus TCF52B]
 gi|217037775|gb|ACJ76297.1| holliday junction DNA helicase RuvB [Thermosipho africanus TCF52B]
          Length = 336

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 35/202 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+LVGP G GK+ LA+I S++  +         L+           LE  D+L  ++   
Sbjct: 55  VLLVGPPGLGKTTLAHIISNEMGTNIHITSGPILEKQGDVAAILSNLEYGDILFIDEI-- 112

Query: 127 FHIINSIHQYDSSLLMTA----------RTFPVSWGVCLPDL----------CS------ 160
            H +N   +    +L TA             P +  + + DL           S      
Sbjct: 113 -HRMNKSVEE---ILYTAMEDFQIDILIGKGPSARSIRI-DLQPFTLVGATTRSGLLSSP 167

Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            R +   ++++     + L  +I +      + ID+  A  + +R   +   A +L+ ++
Sbjct: 168 LRNRFGLIMELDFYTVEELSLIIKRASTVLNVEIDEDAAQLLAKRSRGTPRIALRLLRRV 227

Query: 220 -DNLALSRGMGITRSLAAEVLK 240
            D   ++    I   +  E+++
Sbjct: 228 RDMSTVTEKKKIDVMMVEEIME 249


>gi|115938214|ref|XP_795793.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115967858|ref|XP_001182557.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 672

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 25/148 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS------RSTRFSNIAKSLDSILIDTRKP-------- 110
             +I  GP G GK+ LAN+ + ++      R   FS    ++  +               
Sbjct: 307 PSMIFWGPPGCGKTSLANVIARQAKVRNTHRFITFSATTSNVSDVKSAVEIARNEQRMYR 366

Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
               + +++I   +      F +     +  + +L+ A T   S+ V    L SR     
Sbjct: 367 RKTILFIDEIHRFNKTQQDTFLLH---VENGTIILIGATTENPSFRVNSA-LLSR---CR 419

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFID 194
           VV +     + +  ++ +   + Q+ I+
Sbjct: 420 VVVLEKLSPESIMLILERALKEGQVGIE 447


>gi|2160153|gb|AAB60775.1| Similar to Xenopus TER ATPase (gb|X54240) [Arabidopsis thaliana]
          Length = 330

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 48/153 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------SNIAKSLDSILIDTRKP---- 110
           P   ++L GPSG+GK+ LA   + ++ +           S   K + ++     K     
Sbjct: 94  PCNGILLFGPSGTGKTMLAKAVATEAGANLINMSMSRWFSEGEKYVKAVFSLASKISPSI 153

Query: 111 VLLEDIDLLDFNDTQLFH----------IIN----SIHQYDSSLLMTA------------ 144
           + L++++        + H          IIN      ++ +  L++ A            
Sbjct: 154 IFLDEVES-------MLHRYRLKTKNEFIINWDGLRTNEKERVLVLAATNRPFDLDEAVI 206

Query: 145 RTFPVSWGVCLPDLCSR---LKAATVVKISLPD 174
           R  P    V LPD  SR   LK     +   PD
Sbjct: 207 RRLPHRLMVGLPDARSRSKILKVILSKEDLSPD 239


>gi|312136660|ref|YP_004003997.1| ATPase AAA [Methanothermus fervidus DSM 2088]
 gi|311224379|gb|ADP77235.1| AAA ATPase [Methanothermus fervidus DSM 2088]
          Length = 405

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 39 SRDDLLVHSAIEQAVRLIDSW-PSW----PSRVVILVGPSGSGKSCLANIWSDK 87
            D+ +      + V  +  W   W    P   ++LVGP+G GK+ LA I S+K
Sbjct: 11 DFDEFI---GNRKVVEEVRKWIRDWKEGKPQPPLLLVGPTGVGKTALAQIISNK 61


>gi|301121358|ref|XP_002908406.1| 26S protease regulatory subunit 6A-A [Phytophthora infestans T30-4]
 gi|262103437|gb|EEY61489.1| 26S protease regulatory subunit 6A-A [Phytophthora infestans T30-4]
          Length = 433

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   + ++ +      A  L  + I     ++ +  +L 
Sbjct: 206 PPKGVLLHGPPGTGKTLLARACAKQTDAIFLKLAAPQLVQMFIGDGAKLVRDAFELA 262


>gi|326427477|gb|EGD73047.1| proteasome 26S subunit [Salpingoeca sp. ATCC 50818]
          Length = 424

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 61/183 (33%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ +A   + +  +T        L  + I     ++          
Sbjct: 204 PPKGCLMYGPPGTGKTLMARACAAQCNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 263

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +      D   ++ A       
Sbjct: 264 SPAIIFIDELDAIGTKRYDSEKAGDREVQRTMLELLNQLDGFSSSDDIKVIAATNRVDIL 323

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++   PD+D   +++      RQ+ +   +    + R      
Sbjct: 324 DPAL--LRSGRLD--RKIEFPHPDEDARARIMQ--IHSRQMNVSPDVNYQELARCTDDFN 377

Query: 211 FAE 213
            A+
Sbjct: 378 GAQ 380


>gi|293402112|ref|ZP_06646251.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304504|gb|EFE45754.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 447

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 20/135 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +I  GP G GK+ LA I + K++S      A +     I   K V+ E  D   F     
Sbjct: 61  MIFWGPPGVGKTTLARIIAHKTQSRFIDFSAVTSG---IREIKQVMKEASDARAFGKRTI 117

Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           LF    H  N           +  S +L+ A T   S+ +    L SR     V  +   
Sbjct: 118 LFVDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSA-LLSR---CKVFVLKGL 173

Query: 174 DDDFLEKVIVKMFAD 188
           +   L +++    AD
Sbjct: 174 ETSDLVELLQHALAD 188


>gi|224418782|ref|ZP_03656788.1| recombination factor protein RarA [Helicobacter canadensis MIT
           98-5491]
 gi|253826695|ref|ZP_04869580.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142299|ref|ZP_07804492.1| recombination factor protein RarA [Helicobacter canadensis MIT
           98-5491]
 gi|253510101|gb|EES88760.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131330|gb|EFR48947.1| recombination factor protein RarA [Helicobacter canadensis MIT
           98-5491]
          Length = 391

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 71/179 (39%), Gaps = 27/179 (15%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLEDIDLL 119
            GP GSGK+  A + +++     +S  A S  S  +            +  + ++++  L
Sbjct: 44  FGPPGSGKTTAARLIANELDYPFYSLNATSFKSEDLRNILKQHQNTLQKPLIFIDEVHRL 103

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    +L   I    +   +L++ A      + +    + SR   + V +    + + L 
Sbjct: 104 NKAQQELLLPI---MENHQALILGASMENPFFSLINA-IRSR---SFVFEFHRLNKEELA 156

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           +++ +        ++  +  ++   +  S   A  +++ +D  ALS  M +T  L   +
Sbjct: 157 QILEEY------SLEDSIKDFL---IGTSGGDARAMLNLLD-CALSTKMPLTLELLKSI 205


>gi|241955106|ref|XP_002420274.1| 26S proteasome regulatory subunit, putative [Candida dubliniensis
           CD36]
 gi|223643615|emb|CAX42498.1| 26S proteasome regulatory subunit, putative [Candida dubliniensis
           CD36]
          Length = 430

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++          
Sbjct: 209 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 268

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A     + 
Sbjct: 269 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 328

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L  L S RL     ++  LP ++  E V+      R++  D     +  + + RS
Sbjct: 329 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLHCDNNSVNW--RELARS 378


>gi|57641092|ref|YP_183570.1| cell division protein CDC48 [Thermococcus kodakarensis KOD1]
 gi|57159416|dbj|BAD85346.1| CDC48/VCP homolog, AAA superfamily [Thermococcus kodakarensis KOD1]
          Length = 796

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 62/162 (38%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ LA   ++++ +   +               + L  +  +  + 
Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEEN 274

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 275 APAIIFIDEIDSIAPKREETHGEVEKRVVSQLLTLMDGLKSRGKVIVIGATNRPDAID-- 332

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    +++ +PD    ++++      R + I+ +
Sbjct: 333 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPIEPE 371



 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 45/215 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G+GK+ LA   +++S +   +                NI +        
Sbjct: 550 PPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIREIFRKARQA 609

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL   ++ I +    +++ A   P      
Sbjct: 610 APTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDPA 669

Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208
           L  L      RL     + +  PD+    + I K+   R + +   +    + ++ E  +
Sbjct: 670 L--LRPGRFDRL-----ILVPAPDEKARLE-IFKVHTRR-VPLAGDVDLRELAKKTEGYT 720

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                 +V +     L+    +   +    +K  +
Sbjct: 721 GADIAAVVRE--AAMLAMRRALQEGIIRPGMKADE 753


>gi|254426253|ref|ZP_05039969.1| IstB-like ATP binding protein [Synechococcus sp. PCC 7335]
 gi|196187667|gb|EDX82633.1| IstB-like ATP binding protein [Synechococcus sp. PCC 7335]
          Length = 174

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 22/111 (19%)

Query: 68  ILVGPSGSGKSCLANIWSDK-----------SRSTRFSNIAKSLDSILIDT-------RK 109
           ++ GPSG GK+ L+   +             S +     + ++   +L+           
Sbjct: 17  LIFGPSGVGKTHLSVALARAVIELGKRAKFFSATVLVQQLQQAKLELLLPAMLKKLDRYD 76

Query: 110 PVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            ++++D+  +  ++T+   LF +I +      SLL+TA      W     D
Sbjct: 77  LLVIDDLGYVKKSETETSVLFELI-AYRYERKSLLITANQPFSQWHNIFAD 126


>gi|169824512|ref|YP_001692123.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
 gi|167831317|dbj|BAG08233.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328]
          Length = 335

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 53/210 (25%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
            +  +             + P    +L GP G GK+ LA+I +++           +++ 
Sbjct: 45  FIEAAKNR----------NEPLDHALLYGPPGLGKTTLAHIIANEMGVNLRVTSGPAIEK 94

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCL 155
                     L+  D+L  ++    H IN   +        D +L +     P +  + +
Sbjct: 95  PSDLASILTNLQKDDVLFIDEI---HRINRSVEEILYPAMEDYALDIIVGKGPSARSLRI 151

Query: 156 PDL----------CS-------RLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---- 194
            DL           S       R +   ++ + L D + L+K++ +      I ID    
Sbjct: 152 -DLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIVTRSAGVLGIGIDEQGA 210

Query: 195 ----------KKLAAYIVQRMERSLVFAEK 214
                      ++A  +++R+ R       
Sbjct: 211 MEIARRSRGTPRIANRLLKRV-RDYAEVRA 239


>gi|163760830|ref|ZP_02167909.1| hypothetical protein HPDFL43_06787 [Hoeflea phototrophica DFL-43]
 gi|162281874|gb|EDQ32166.1| hypothetical protein HPDFL43_06787 [Hoeflea phototrophica DFL-43]
          Length = 436

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 47  ASGSLGSMIFWGPPGTGKTTVARLLAGETDLAFDQISAIFSGVADLKKVFETA----RAR 102

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 103 RMGGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTIVLVGATTENPSFELNAA---LLSR-- 157

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D++ LE ++V+  AD    + ++ +  A +++  +        L +++  
Sbjct: 158 -ARVLTFRSHDEESLESLLVRAEADTGKPLPLEPEARASLLRMADGDGRAVLTLAEEVWR 216

Query: 222 LA 223
            A
Sbjct: 217 AA 218


>gi|116073846|ref|ZP_01471108.1| putative ATPase, AAA family protein [Synechococcus sp. RS9916]
 gi|116069151|gb|EAU74903.1| putative ATPase, AAA family protein [Synechococcus sp. RS9916]
          Length = 736

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I ++ +R+   S  A       + T      + +D      T L
Sbjct: 57  LLLHGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRTEVDAARQRLDRHGLR-TIL 115

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  +  L+ A T    + V    L SR   + + ++   +
Sbjct: 116 FIDEVHRFNSAQQDALLPWVENGTLTLIGATTENPYFEVNKA-LVSR---SRLFRLQTLE 171

Query: 175 DDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            D L  ++ +  +       DR + I  +   ++V             ++
Sbjct: 172 ADDLRDLLSRALSDQERGYGDRLVTITSEAIDHLVDVANGDARSLLNALE 221


>gi|291300813|ref|YP_003512091.1| SARP family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570033|gb|ADD42998.1| transcriptional regulator, SARP family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 1025

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 31/161 (19%)

Query: 3   LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGIS--RDDLLVHSAIEQAVRLIDSWP 60
           ++  D +   P   +   P+    QL    P   G S  RD L       Q  RL+D   
Sbjct: 261 ILTSDPTLLTPRPAEPSVPRVVPAQLP---PATAGFSGRRDQL------RQLDRLLDDTE 311

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDTRKPVL--- 112
             P+   ++ GP G+GK+ LA  W+ + R        + ++       L+   + +    
Sbjct: 312 --PAPTTLITGPPGAGKTTLAVHWAGRHRDRWPDGQLYIDLRGYGPEPLVQPIEALAYFL 369

Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                  + +       + LF            LL+     
Sbjct: 370 RAIGLPTDQVPPQQAEASALF----RSRIAGRRLLIVLDNA 406


>gi|19173654|ref|NP_597457.1| TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE [Encephalitozoon cuniculi
           GB-M1]
 gi|19170860|emb|CAD26634.1| TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 506

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 21/137 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------IAKSLDSILIDTRKPVLLED 115
           P   ++L G SG GK+ L N  S + +             + +S     +  R  +L+ED
Sbjct: 70  PPSTLLLHGVSGVGKTFLVNCISQEYKLPIVKACMDSDKELRESFRKSSLLERSIILIED 129

Query: 116 IDLLDFNDTQLF-----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           ID L  +D ++      ++ N       S++++    P      L     +   + +VKI
Sbjct: 130 IDALGEDDRKVISQLSEYLENH---KGKSIVISTARNPALIHESLN----KFDNSLLVKI 182

Query: 171 SLPDDDFLEKVIVKMFA 187
              D+     ++ ++  
Sbjct: 183 PTTDE--RRDILARLAE 197


>gi|189220465|ref|YP_001941105.1| ATPase [Methylacidiphilum infernorum V4]
 gi|189187323|gb|ACD84508.1| ATPase [Methylacidiphilum infernorum V4]
          Length = 454

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 37/215 (17%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPV 111
           RLID+      + +IL GP G+GK+ LA I + K++S   R + +   +  I     +  
Sbjct: 49  RLIDADR---IQSLILYGPPGTGKTTLAEIIAKKTKSFFARLNAVEAGVSDIRKVIGQAA 105

Query: 112 LLEDIDLLDFNDTQLF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLC 159
           L       +   T LF    H  N   Q             L+ A T    + +  P L 
Sbjct: 106 L---RWKKEKKHTLLFIDEIHRFNKSQQDVLLPDLETGIIKLIGATTHNPCFYLTAP-LL 161

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFA 212
           SR   + + +        LE ++++   D  R +      I+K+   +++   E     A
Sbjct: 162 SR---SHLFEFKPLSKQSLETLLLRALTDKERGLGNYEVSIEKEAKEFLLNLCE---GDA 215

Query: 213 EKLVDKMDNL---ALSRGMGITRSLAAEVLKETQQ 244
            +L++ ++     +L         L  E ++   Q
Sbjct: 216 RRLLNYLEIAVLSSLQENQPAPVILNIETIQNLVQ 250


>gi|148243814|ref|YP_001220053.1| IstB ATP binding domain-containing protein [Acidiphilium cryptum
           JF-5]
 gi|146400377|gb|ABQ28911.1| IstB domain protein ATP-binding protein [Acidiphilium cryptum JF-5]
          Length = 291

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 22/109 (20%)

Query: 70  VGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPV 111
            GP G GKS LA           W        D  +  + +    +L++ +  +D   P+
Sbjct: 113 FGPPGGGKSHLAAAIGLALVENGWRVLFTRTSDLVQKLQIARRELALEATIAKLDKFHPL 172

Query: 112 LLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +L+D+  +  +  +   LF +I S      SL++TA      WG   PD
Sbjct: 173 ILDDLAYVTKDQAETSVLFELI-SARYERRSLMITANQPFGEWGKVFPD 220


>gi|296423208|ref|XP_002841147.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637381|emb|CAZ85338.1| unnamed protein product [Tuber melanosporum]
          Length = 818

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 251 PPRGILLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 310

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 311 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 370

Query: 155 L 155
           L
Sbjct: 371 L 371



 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           PSR V+  GP G+GK+ LA   +++  +   S     L
Sbjct: 525 PSRGVLFYGPPGTGKTLLAKAVANECAANFISVKGPEL 562


>gi|257453133|ref|ZP_05618432.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_5R]
 gi|257467391|ref|ZP_05631702.1| Holliday junction DNA helicase RuvB [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918521|ref|ZP_07914761.1| holliday junction DNA helicase ruvB [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|317059668|ref|ZP_07924153.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 3_1_5R]
 gi|313685344|gb|EFS22179.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 3_1_5R]
 gi|313692396|gb|EFS29231.1| holliday junction DNA helicase ruvB [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 334

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 80/198 (40%), Gaps = 27/198 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA + +++  +         L+           LE+ D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLAGVIANEMGANLKITSGPVLEKAGDLAAILTSLEENDVLFIDEI-- 112

Query: 127 FHIINSIHQ-------YDSSL-LMTARTFPVS-WGVCLPD-----------LCS---RLK 163
            H +N+  +        D  L ++  +        + LP+           L S   R +
Sbjct: 113 -HRLNTAVEEILYPAMEDKELDIIIGKGPAARSIRIELPNFTLIGATTRAGLLSAPLRDR 171

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
                K+    ++ ++++I++     +I ++ + A  + +R   +   A +L+ ++ D  
Sbjct: 172 FGISHKMEYYTEEEVKEIILRGGKILEIEVEGEGAEELAKRSRGTPRIANRLLKRVRDYA 231

Query: 223 ALSRGMGITRSLAAEVLK 240
            +     IT+ +A + L 
Sbjct: 232 EIRGKGIITQEIAIQALN 249


>gi|219559489|ref|ZP_03538565.1| transposase [Mycobacterium tuberculosis T17]
          Length = 255

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106
            A+R +D+        VIL GP G GK+     L +  + +    RF+  ++ L  +   
Sbjct: 97  AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 151

Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                             ++L+D    +    +   L+ +I+        L++T+   P 
Sbjct: 152 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 211

Query: 150 SW 151
           +W
Sbjct: 212 NW 213


>gi|239616608|ref|YP_002939930.1| AAA ATPase central domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505439|gb|ACR78926.1| AAA ATPase central domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 427

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 25/181 (13%)

Query: 67  VILVGPSGSGKSCLANIW---------------SDKSRSTRFSNIAKSLDSILIDTRKPV 111
           +IL GP GSGK+ +A +                +    +     I +    +    +  V
Sbjct: 40  MILFGPPGSGKTTIARLIKESLADDKYEFVAFSASLQGTADLKKIFERARQLRKYGKHLV 99

Query: 112 L-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           L +++I  L+     +F     + +  +  L+ A T   S+ V  P L SR +   V++ 
Sbjct: 100 LFVDEIHRLNKTQQDVFLP---VVEDGTVTLIGATTENPSFEVN-PALLSRCR-LLVLRQ 154

Query: 171 SLPDD--DFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
             P+D    L + + K    +   I I ++L   + +        A   ++ +   A + 
Sbjct: 155 LSPEDTVQLLHRALEKDERLSSLDIAISEELIRILAENAGGDARVALNFLETLYENAAAM 214

Query: 227 G 227
           G
Sbjct: 215 G 215


>gi|191638187|ref|YP_001987353.1| Chromosome segregation helicase (Putative) [Lactobacillus casei
           BL23]
 gi|190712489|emb|CAQ66495.1| Chromosome segregation helicase (Putative) [Lactobacillus casei
           BL23]
 gi|327382219|gb|AEA53695.1| hypothetical protein LC2W_1361 [Lactobacillus casei LC2W]
 gi|327385416|gb|AEA56890.1| hypothetical protein LCBD_1393 [Lactobacillus casei BD-II]
          Length = 431

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 23/167 (13%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   K      +    +   + I   +        +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +    +L+ A T      +  P + SR     + ++     D 
Sbjct: 102 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPDD 154

Query: 178 LEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +   I +  A       D Q+ +      Y+       L  A   ++
Sbjct: 155 IASAINRALADHKRGLGDYQVDLQPDALDYLTHATNGDLRSALNGLE 201


>gi|38455496|gb|AAR20845.1| cell division cycle protein 48 [Pseudochlorella sp. CCAP 211/1A]
          Length = 614

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 33/150 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 43  PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 102

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 103 SPAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSIDAA 162

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIV 183
           L     R  +    + I +PD+    +V+ 
Sbjct: 163 LR----RFGRFDREIDIGVPDEIGRLEVLR 188



 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E +D  
Sbjct: 316 PSKGVLFYGPPGCGKTPLAKAIANECQANFISVKGPELLTMWFGESEANVREILDKA 372


>gi|332159492|ref|YP_004424771.1| hypothetical protein PNA2_1852 [Pyrococcus sp. NA2]
 gi|331034955|gb|AEC52767.1| hypothetical protein PNA2_1852 [Pyrococcus sp. NA2]
          Length = 368

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 16/156 (10%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R ++L GP G+GKS LA+  ++   +T FS  A  L S        ++          
Sbjct: 122 PPRGILLFGPPGTGKSLLASAVANNLNATFFSVKASDLLSKYFGESSKLV---------- 171

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWG-VCLPDLCSRLKAATVVKISLPDDDFLEKV 181
            + LF +     Q + S++       ++     L D   R+    + +I    D   EKV
Sbjct: 172 -SALFSL---ARQMNPSVIFIDEIDSLTLKRSALDDAARRMIGTLLAEIDGFKD-KKEKV 226

Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           I+    +    +D+ + + +  R+   L   E  ++
Sbjct: 227 ILLAATNTPWDLDEAILSRLPIRIYTPLPDVEAAIE 262


>gi|308049686|ref|YP_003913252.1| Recombination protein MgsA [Ferrimonas balearica DSM 9799]
 gi|307631876|gb|ADN76178.1| Recombination protein MgsA [Ferrimonas balearica DSM 9799]
          Length = 442

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 75/194 (38%), Gaps = 32/194 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++L GP G+GK+ LA + +  + +   R S +   +  I     K    +DI       T
Sbjct: 52  MLLWGPPGTGKTTLAELVARYANAHVERISAVTSGVKEIRAAIDKA---KDIAAAHGRQT 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + + + A T   S+ V    L SR +   V  I  
Sbjct: 109 LLFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFEVNNA-LLSRTR---VYVIKK 164

Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224
            ++  +  ++     D         + + + +A  +   ++     A + ++ ++ +A +
Sbjct: 165 LEESAILSLLQHALTDPDKGLGKLNLSLPEPVARQLASLVD---GDARRALNLLELMADM 221

Query: 225 SRGMGITRSLAAEV 238
           +    ++ +L  EV
Sbjct: 222 AEDGQLSEALLKEV 235


>gi|296313690|ref|ZP_06863631.1| replication-associated recombination protein A [Neisseria
           polysaccharea ATCC 43768]
 gi|296839751|gb|EFH23689.1| replication-associated recombination protein A [Neisseria
           polysaccharea ATCC 43768]
          Length = 436

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|153840138|ref|ZP_01992805.1| ATPase, AAA family [Vibrio parahaemolyticus AQ3810]
 gi|149746235|gb|EDM57329.1| ATPase, AAA family [Vibrio parahaemolyticus AQ3810]
          Length = 423

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            D + +   + +   D  R +          +   +        RM  SL + E L D  
Sbjct: 166 LDKEEISLALNQAINDKERGLGDTPANFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223

Query: 220 DNLALSRGMGITRSLAAEV 238
           ++ A      IT  L AEV
Sbjct: 224 EDNA-QGEKEITLKLLAEV 241


>gi|89891667|ref|ZP_01203170.1| ATPase related to the helicase subunit of the holliday junction
           resolvase [Flavobacteria bacterium BBFL7]
 gi|89516002|gb|EAS18666.1| ATPase related to the helicase subunit of the holliday junction
           resolvase [Flavobacteria bacterium BBFL7]
          Length = 431

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 29/149 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS---------------RSTRFSNIAKSLDSILIDTRK 109
             +IL GP G+GK+ LANI + +S                     + AKS   +      
Sbjct: 41  PSLILWGPPGTGKTTLANIIAQESKRPFYTLSAINSGVKDVREVIDKAKSAGGLFTAKNP 100

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L     +  +     L+ A T   S+ V +P L SR     V 
Sbjct: 101 ILFIDEIHRFSKSQQDSLL----AAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 152

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            +    D F +  + ++   R + ID+ L
Sbjct: 153 VL----DAFAKADLEQLLH-RALKIDEVL 176


>gi|332993165|gb|AEF03220.1| recombination factor protein RarA [Alteromonas sp. SN2]
          Length = 444

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 31/158 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + +  + ++     A +     I        E+     +N   L
Sbjct: 52  MILWGPPGTGKTTLAELIATYTNASVIRISAVTSGVKDIRAAMDAAKEN---SRYNQRTL 108

Query: 127 F-----HIINSIHQYD----------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
                 H  N   Q            + +  T              L SR++   V  + 
Sbjct: 109 LFVDEVHRFNKSQQDAFLPFVESGTVTFIGATTENPSFELNNA---LLSRVR---VYVLK 162

Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIV 202
             + + L +++ +   D       RQ+ I++  +  ++
Sbjct: 163 ALEQEALAELMQRALTDEEKGLGSRQLSIEEDASNALL 200


>gi|331089854|ref|ZP_08338747.1| hypothetical protein HMPREF1025_02330 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330403551|gb|EGG83109.1| hypothetical protein HMPREF1025_02330 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 262

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 20/127 (15%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVV-IL-VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
            SAI  A   + +W       +  L  GP G+GKS LA   ++       +    + ++I
Sbjct: 90  SSAIRIAEEYVANWQKMKQNHMGYLFWGPVGTGKSYLAACIANALLEQEVTVKMTNFNTI 149

Query: 104 LID---------------TRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTAR 145
           L D                 + ++++D+ +   ++  L   F +I+  ++    L++T  
Sbjct: 150 LNDLFAAEDKTEYIRSLNGYELLIIDDLGVERNSEYALENIFSVIDWRYRSGKPLIITTN 209

Query: 146 TFPVSWG 152
              V   
Sbjct: 210 IPLVQLK 216


>gi|317500666|ref|ZP_07958885.1| hypothetical protein HMPREF1026_00828 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897984|gb|EFV20036.1| hypothetical protein HMPREF1026_00828 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 263

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 20/127 (15%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVV-IL-VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
            SAI  A   + +W       +  L  GP G+GKS LA   ++       +    + ++I
Sbjct: 91  SSAIRIAEEYVANWQKMKQNHMGYLFWGPVGTGKSYLAACIANALLEQEVTVKMTNFNTI 150

Query: 104 LID---------------TRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTAR 145
           L D                 + ++++D+ +   ++  L   F +I+  ++    L++T  
Sbjct: 151 LNDLFAAEDKTEYIRSLNGYELLIIDDLGVERNSEYALENIFSVIDWRYRSGKPLIITTN 210

Query: 146 TFPVSWG 152
              V   
Sbjct: 211 IPLVQLK 217


>gi|160936225|ref|ZP_02083598.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441035|gb|EDP18759.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC
           BAA-613]
          Length = 438

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 18/130 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I  GP G GK+ LA I + ++ + +F N +     I       V  E+   +    T
Sbjct: 51  PSMIFWGPPGVGKTTLAGIIAKRTNA-QFINFSAVTSGIKEIKEVMVQAENSRRMGIK-T 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  S +L+ A T   S+ +    L SR     V  +  
Sbjct: 109 LLFVDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSA-LLSR---CRVFVLQA 164

Query: 173 PDDDFLEKVI 182
             ++ L ++I
Sbjct: 165 LTENDLARLI 174


>gi|115725047|ref|XP_782191.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 357

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 137 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 196

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +      +   ++ A       
Sbjct: 197 LPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSSEEIKVIAATNRVDIL 256

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++   P+++   +++      R++ +   +    + R      
Sbjct: 257 DPAL--LRSGRLD--RKIEFPAPNEEARARIMQ--IHSRKMNVGADVNFEELARCTDDFN 310

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 311 GAQCKAVCVEAGMIALRRGAT 331


>gi|21227358|ref|NP_633280.1| CdcH protein [Methanosarcina mazei Go1]
 gi|20905716|gb|AAM30952.1| CdcH protein [Methanosarcina mazei Go1]
          Length = 751

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 61/166 (36%), Gaps = 39/166 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ +A   + ++ +                     + +  +    D
Sbjct: 209 PPKGVLLHGPPGTGKTMIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFEEAEKD 268

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 269 APSIIFIDEIDSIAPKRGEVTGEMERRVVAQLLSLMDGLKSRGEVVVIAATNRPNSIDEA 328

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L       +       ++I +PD +  ++++  +   R + ++ ++
Sbjct: 329 LR------RGGRFDREIEIGIPDRNGRKQIL--LIHTRGMPLEDEV 366



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G+GK+ LA   +++S +   S     L S  +   +  + E
Sbjct: 481 PPRGVLLFGPPGTGKTLLAKAVANESEANFISIKGPELLSKYVGESERAIRE 532


>gi|84515662|ref|ZP_01003023.1| ATPase, AAA family [Loktanella vestfoldensis SKA53]
 gi|84510104|gb|EAQ06560.1| ATPase, AAA family [Loktanella vestfoldensis SKA53]
          Length = 436

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G GK+ +A + +D++     + S I   +  +            + 
Sbjct: 49  ASGSLSSLVFWGPPGVGKTTIARLLADETDLHFVQISAIFTGVPELRKVFEAA----KMR 104

Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163
             +   T LF    H  N   Q          ++L+   T              L SR +
Sbjct: 105 RQNGKGTLLFVDEIHRFNKAQQDGFLPYMEDGTILLVGATTENPSFELNAA---LLSRAQ 161

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + +++L D + L +   +    R + +D      ++   +        L++++   A
Sbjct: 162 VFILTRLTLADLELLAQRAEQEMG-RALPLDGPAREALLDMADGDGRALLNLIEQV--AA 218

Query: 224 LSRGMGITR-SLAAEVLKETQQCD 246
                 +TR  L   ++K   + D
Sbjct: 219 WKTETKLTRDDLTKRLMKRAVKYD 242


>gi|300854386|ref|YP_003779370.1| putative helicase subunit of Holliday junction resolvase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434501|gb|ADK14268.1| predicted helicase subunit of Holliday junction resolvase
           [Clostridium ljungdahlii DSM 13528]
          Length = 438

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 26/181 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            I  GP G GK+ LA I ++ +++  +   A +  +  +        +D        T L
Sbjct: 55  AIFYGPPGVGKTTLARIIANTTKANFYELSAVNSGTSDVKKIIKEA-DDNQKFYSKKTIL 113

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +    +L+ A T    + +    L SR   + + +     
Sbjct: 114 FIDEIHRFNKAQQDSVLNAVEKGIIILIGATTENPYFEINNA-LLSR---SMIFEFKNLS 169

Query: 175 D----DFLEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +    + L   I   K F    I +D ++  Y       S     K ++ +D    +   
Sbjct: 170 ENNVKEALNNAIKSPKGFGYLNIEVDPEVFDYFAVH---SNGDIRKALNALDIAVRTSSR 226

Query: 229 G 229
            
Sbjct: 227 K 227


>gi|288559692|ref|YP_003423178.1| cell division control protein Cdc48 [Methanobrevibacter ruminantium
           M1]
 gi|288542402|gb|ADC46286.1| cell division control protein Cdc48 [Methanobrevibacter ruminantium
           M1]
          Length = 735

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 62/168 (36%), Gaps = 43/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V++ GP G+GK+ LA   +++S +                    N+ +  +    +
Sbjct: 240 PPKGVLMHGPPGTGKTLLAKAVANESDAHFIVINGPEIMSKYVGGSEENLREFFEEAEEN 299

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ ++     +++ A   P S    
Sbjct: 300 APSIIFIDELDAIAPKREETNGEVERRTVAQLLTLMDGLNSRGQVVVIGATNRPDSLDGA 359

Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L      D          ++I +PD D  ++++      R + + + +
Sbjct: 360 LRRPGRFD--------REIEIGVPDKDERKEIME--IHTRGMPLAEDV 397


>gi|257084820|ref|ZP_05579181.1| recombination factor protein RarA [Enterococcus faecalis Fly1]
 gi|256992850|gb|EEU80152.1| recombination factor protein RarA [Enterococcus faecalis Fly1]
          Length = 425

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q + R+        ++ ++   L+      
Sbjct: 153 TDIQQAIHEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|255292411|dbj|BAH89530.1| transposase IstB-like ATP-binding protein [uncultured bacterium]
          Length = 226

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 32/154 (20%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----- 83
            F F           ++  A   A+   DSW +  + V++  GP G GKS LA       
Sbjct: 79  SFDFDAVP-------MISKAQVMAMAAGDSWLAKGANVLM-FGPPGGGKSHLAAAIGLAL 130

Query: 84  ----WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LF 127
               W        D  +  + +     L++ +  +D    ++L+D+  +  +  +   LF
Sbjct: 131 IENSWRVLFTRTTDLVQKLQVARRELQLEAAITKLDKFDLIILDDLAYVTKDQAETSVLF 190

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            +I S      S+++TA          LP   SR
Sbjct: 191 ELI-SARYERRSIMITANQPFGEMEQGLP--RSR 221


>gi|284031592|ref|YP_003381523.1| AAA ATPase central domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283810885|gb|ADB32724.1| AAA ATPase central domain protein [Kribbella flavida DSM 17836]
          Length = 457

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 28/176 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT--------RKPVLLEDI 116
           R V+L GP G+GK+        +        +A      + D            V+LED 
Sbjct: 247 RGVLLYGPPGTGKTHTVRYLLSRLPQFTVVLLAGRSIMYIGDACALARKLEPALVVLEDC 306

Query: 117 DLLD--------FNDTQLFHIIN----SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
           DL+           +  LF ++N         D + L+T         +  P L  R   
Sbjct: 307 DLIAESRDITRGGENPLLFQVLNEMDGLAEDADVAFLLTTNRA----DILEPALAQRPGR 362

Query: 165 A-TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF-AEKLVDK 218
               V++ LPD     +++        + +   +   IV R E +    A++LV +
Sbjct: 363 VDLAVEVPLPDAPGRSRLL--ALYGPSLEVSAGVVDEIVSRTEGTTASFAKELVRR 416


>gi|189423098|ref|YP_001950275.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189423951|ref|YP_001951128.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189423973|ref|YP_001951150.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189424358|ref|YP_001951535.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189424498|ref|YP_001951675.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189425239|ref|YP_001952416.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189425315|ref|YP_001952492.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189425903|ref|YP_001953080.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189426534|ref|YP_001953711.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189419357|gb|ACD93755.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189420210|gb|ACD94608.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189420232|gb|ACD94630.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189420617|gb|ACD95015.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189420757|gb|ACD95155.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189421498|gb|ACD95896.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189421574|gb|ACD95972.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189422162|gb|ACD96560.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
 gi|189422793|gb|ACD97191.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ]
          Length = 245

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87
           FP    +   +       E  VR++ +         +ILVG +G+GK+ LA   + +   
Sbjct: 66  FPVEKDLDHFEFTDTPINETQVRMLYEGGFLTEKSNIILVGGTGTGKTHLAIAIARQVIR 125

Query: 88  ----SRSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLFHI 129
                R     ++   L+   +  R   L E    +DL+  ++             LFH+
Sbjct: 126 NGKRGRYFNLLDLVNQLEQEKLSGRGGKLAEALCRLDLVVLDELGYLPFSKAGGQLLFHL 185

Query: 130 INSIHQYDSSLLMTARTFPVSWG 152
           I+ +++  +SL++T       W 
Sbjct: 186 ISKLYER-TSLIITTNLTFGEWP 207


>gi|308182591|ref|YP_003926718.1| recombination factor protein RarA [Helicobacter pylori PeCan4]
 gi|308064776|gb|ADO06668.1| recombination factor protein RarA [Helicobacter pylori PeCan4]
          Length = 391

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIAHALERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+ VK     +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCVKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIENPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|300121635|emb|CBK22153.2| unnamed protein product [Blastocystis hominis]
          Length = 441

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 43/178 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + ++L GP G+GKS LA   + ++ ST  S  +  L S        ++          
Sbjct: 173 PWKGILLYGPPGTGKSYLAKAVASQADSTFMSVSSADLVSKWQGETARLVKNLFQLARKN 232

Query: 113 ------LEDIDLL----------DFNDTQL--FHIINSIHQYD------SSLLMTARTFP 148
                 +++ID L                L  F     +            L++ A   P
Sbjct: 233 KPTVIFIDEIDSLGGSRDSGNSSGGQKQALTEF----LVQMDGVGKDQTGILVLGATNVP 288

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
             W +    L  R +    + I LPD++  + +    F      +  +   Y+ +  E
Sbjct: 289 --WEIDSA-LRRRFQ--KRIYIPLPDEEARKAMFKIHFGKEMHELTDEDFDYLAKHTE 341


>gi|148655299|ref|YP_001275504.1| IstB ATP binding domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567409|gb|ABQ89554.1| IstB domain protein ATP-binding protein [Roseiflexus sp. RS-1]
          Length = 263

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 31/136 (22%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           A         W    +IL G  G GK+ LA   +++     +  +   +  +L       
Sbjct: 100 AQEYARHPRGW----LILFGNYGCGKTHLAAAIANQLLQNHYRVLFAVVPDLLDHLRSTF 155

Query: 105 --------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         I     ++L+D+   +   +   +LF IIN  + +    ++T+   
Sbjct: 156 GPSSEIEYDQRFEDIREADVLILDDLGTENTTPWAREKLFQIINHRYNFALPTVITSNRK 215

Query: 148 PVSWGVCLPDLCSRLK 163
           P       P + SR+ 
Sbjct: 216 PEEID---PRIFSRMS 228


>gi|70606463|ref|YP_255333.1| proteasome-activating nucleotidase [Sulfolobus acidocaldarius DSM
           639]
 gi|29423762|gb|AAO73475.1| putative 26S proteasome regulatory subunit 4 [Sulfolobus
           acidocaldarius]
 gi|68567111|gb|AAY80040.1| protease regulatory protein [Sulfolobus acidocaldarius DSM 639]
          Length = 396

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   + +S +T    +A       +     ++ E  +L 
Sbjct: 169 PPKGVLLYGPPGTGKTMLAKAVAAESNATFIHVVASEFAQKFVGEGARIVREVFELA 225


>gi|56421102|ref|YP_148420.1| recombination factor protein RarA [Geobacillus kaustophilus HTA426]
 gi|56380944|dbj|BAD76852.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 431

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 22/176 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLED 115
             ++L G  G+GK+ LA   +  +          +     I +++++        + +++
Sbjct: 43  PSLLLYGEPGTGKTSLAYAIARTAGREWVAINATAAGKKEIEEAVEAARWSGNVVLFIDE 102

Query: 116 IDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           I  L+     +   H+     +     L+ A T      V  P + SR      +K   P
Sbjct: 103 IHRLNKAQQDVLLPHL-----ESGLVTLIGATTENPFHEVN-PAIRSRCGQIQQLKPLKP 156

Query: 174 DDDFLEKVIVKMFAD--RQIFIDKKLAA-YIVQRMERSLVFAEKLVDKMDNLALSR 226
           DD  L  ++ +  AD  R +     +    ++ R+  +     ++   +   A++ 
Sbjct: 157 DD--LMIILKRALADPERGVGEPPVVIDESLLWRIAEAAGGDARVALSLLEAAVAA 210


>gi|117924970|ref|YP_865587.1| recombination factor protein RarA [Magnetococcus sp. MC-1]
 gi|117608726|gb|ABK44181.1| Recombination protein MgsA [Magnetococcus sp. MC-1]
          Length = 447

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 35/204 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
             +IL GP G GK+ +A +      +T+ +   +SL ++L   ++  L+ D         
Sbjct: 49  PSMILWGPPGCGKTTIARMI-----ATQVTLRFESLSAVLAGVKEVRLVVDRAREARVLG 103

Query: 122 NDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATV 167
             T LF    H  N           +    +L+  T              L SR     V
Sbjct: 104 QGTILFVDEIHRFNKAQQDAFLPYVESGDIILIGATTENPSFELNGA---LLSR---CRV 157

Query: 168 VKISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           V++    +  L  ++ +   D  R      + ++ +   ++ Q       +A  L++   
Sbjct: 158 VELKPLHEAALVTLLQRALVDQERGLERYKLAVEPEALQHMAQLAAGDGRYALNLLETFV 217

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
            LA   G+     L  E LK + Q
Sbjct: 218 ELAAKSGVARGSQLTLERLKNSLQ 241


>gi|312143966|ref|YP_003995412.1| AAA ATPase central domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904617|gb|ADQ15058.1| AAA ATPase central domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 443

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 101/263 (38%), Gaps = 59/263 (22%)

Query: 14  DKQKNDQP---KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILV 70
           D++K DQP   + +   L           + D +V    +   R I +      R +I  
Sbjct: 8   DQEKKDQPLAYRMRPRNL------EEFFGQKD-IVGE-NKLLSRAIKADR---LRSLIFY 56

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF-NDT 124
           GP G+GK+ LA + ++++++      A +     +  ++   +    L +   + F ++ 
Sbjct: 57  GPPGTGKTSLAQVIANQTKAEFIKLNAVTSGVKDIREVIKKAKSNRSLYNTKTILFIDEI 116

Query: 125 QLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR--------LKAATVV 168
              H  N           +  + +++ A T    + V  P L SR        L+A+ + 
Sbjct: 117 ---HRFNKSQQDALLPSVENGTLIMIGATTENPYFEVNSP-LLSRSRIFRLEKLEASQIY 172

Query: 169 KISLPDDDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           KI        + +I K   +R +      I +K   +I +  +     A   ++ ++   
Sbjct: 173 KI------LKKALINK---ERGLGKLEVNISEKDLRFIAELAD---GDARVALNTLELAV 220

Query: 224 LS--RGMGITRSLAAEVLKETQQ 244
           L+         +L  E+++++ Q
Sbjct: 221 LTTPHDKNGQINLDKEIIEDSMQ 243


>gi|224125162|ref|XP_002319515.1| predicted protein [Populus trichocarpa]
 gi|222857891|gb|EEE95438.1| predicted protein [Populus trichocarpa]
          Length = 423

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 66/201 (32%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + ++L GP G+GK+ +A   + ++ +T        L  + I     ++          
Sbjct: 203 PPKGILLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 262

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 +++ID +                  +  ++N +      D   ++ A       
Sbjct: 263 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  + S RL     ++   P ++   +++      R++ +   +    + R      
Sbjct: 323 DPAL--MRSGRLD--RKIEFPHPSEEARARILQ--IHSRKMNVHPDVNFEELARSTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   L+     T
Sbjct: 377 GAQLKAVCVEAGMLALRRDAT 397


>gi|187735789|ref|YP_001877901.1| ABC transporter [Akkermansia muciniphila ATCC BAA-835]
 gi|187425841|gb|ACD05120.1| ABC transporter related [Akkermansia muciniphila ATCC BAA-835]
          Length = 265

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 23/175 (13%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDT 124
            + LVGPSG GK+ L N+ +      +    + S D  +I    P      D  + F D 
Sbjct: 35  FICLVGPSGCGKTTLLNMIA---GLIKSDTGSISYDGEIISGPGP------DRTVVFQDF 85

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIV 183
            LF  +N +H  +  L  T         + L +L S  L   T  +I     +    +  
Sbjct: 86  ALFPWLNVLHNVEFGLRFTGIPRRKRCQIALKNLKSVGLDNFTQARIH----ELSGGMKQ 141

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV-DKM--DNLALSRGMGITRSLA 235
           ++   R + +  ++   ++  M+      + +  +++  D  A+  G GIT    
Sbjct: 142 RVAIARALALRPRV---LL--MDEPFAALDAMTREQLYADIQAICAGHGITVVFV 191


>gi|167758834|ref|ZP_02430961.1| hypothetical protein CLOSCI_01177 [Clostridium scindens ATCC 35704]
 gi|167663574|gb|EDS07704.1| hypothetical protein CLOSCI_01177 [Clostridium scindens ATCC 35704]
          Length = 438

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 77/200 (38%), Gaps = 33/200 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + ++ + +      A       ++       E + +     T L
Sbjct: 55  IIFYGPPGTGKTTLAKVIANTTSAVFTQINATVAGKKDMEEVVGRAKETLGMYQKK-TIL 113

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   +++ ++   D
Sbjct: 114 FVDEIHRFNKSQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LISR---SSIFELHPLD 169

Query: 175 DDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            + ++ VI +   D  + +      I++    ++    + S   A   ++ ++   L+  
Sbjct: 170 KEDIKTVIRRAVYDVEKGMGSYDAVIEEDALEFLA---DISGGDARNALNAVELGILTTE 226

Query: 228 MG------ITRSLAAEVLKE 241
                   IT  +A+E +++
Sbjct: 227 RSDDGKIHITLPVASECIQK 246


>gi|75906293|ref|YP_320589.1| AAA ATPase [Anabaena variabilis ATCC 29413]
 gi|75700018|gb|ABA19694.1| AAA ATPase, central region [Anabaena variabilis ATCC 29413]
          Length = 613

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 46/142 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS------------TRFSNIAKSLDSILIDTRKP---- 110
           ++L GP G+GK+ LA   + ++R+                   +++  +    R+     
Sbjct: 396 ILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLSRWVGASEQAVRELFAKARQAEPCV 455

Query: 111 VLLEDIDLLD-----------FNDTQLFHII------------------NSIHQYDSSLL 141
           V +++ID L             +D  +  ++                  N     D +LL
Sbjct: 456 VFIDEIDTLAPARGSFSGDSGVSDRVVGQLLTELDGIEVGSTILVIGATNRPDALDPALL 515

Query: 142 MTARTFPVSWGVCLPDLCSRLK 163
              R   +   V LPDL SRL 
Sbjct: 516 RAGRLD-LQMKVDLPDLASRLA 536



 Score = 35.5 bits (81), Expect = 7.1,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P+R V+LVGP G+GK+  A   +++      +               + L  I     K 
Sbjct: 126 PTRGVLLVGPPGTGKTLTARGLAEELGVNYIALVGPEVISKYYGEAEQRLRGIFEKAAKN 185

Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID L  + +             L  +++        +++ A   P      
Sbjct: 186 APCIIFIDEIDSLAPDRSAVEGEVEKRLVAQLLSLMDGFSHSQGVIVLAATNRPDHLDPA 245

Query: 155 L 155
           L
Sbjct: 246 L 246


>gi|289670475|ref|ZP_06491550.1| recombination factor protein RarA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 457

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G GK+ LA + +  + +  F  I+  L    +   + VL E            
Sbjct: 62  MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 118

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 119 LFVDEVHRFNKAQQYAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 175

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     A+R +      + +     I    +  +  A  L++    LA+
Sbjct: 176 PQDIVEALQRAL---HDAERGLGQQTIQVSEAALLEIASAADGDVRRALTLLEIAAELAM 232

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 233 GEGGEITPRTLLQVLADRTR 252


>gi|123469082|ref|XP_001317755.1| spermatogenesis associated factor [Trichomonas vaginalis G3]
 gi|121900497|gb|EAY05532.1| spermatogenesis associated factor, putative [Trichomonas vaginalis
           G3]
          Length = 796

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G GKS +A   ++++ +  +                 N+    +     
Sbjct: 232 PPRGILLYGPPGCGKSLIARAIANETGAAFYLINGPEIMSKMSGESEGNLRSIFEKAQET 291

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +  N              QL  +++ +    + ++M A   P +    
Sbjct: 292 SPSIIFIDEIDSVAPNRDKAQGEASTRVVSQLLTLMDGVKSRSNVIVMAATNRPNAIDPA 351

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+    +V+        + +   +
Sbjct: 352 LR----RFGRFDREIDIGVPDEAGRLEVLGIHTKR--MKLSDDV 389



 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PSR V+  GP G GK+ LA   + +  +   S
Sbjct: 505 PSRGVLFYGPPGCGKTLLAKAVASECSANFIS 536


>gi|310643530|ref|YP_003948288.1| aaa atpase central domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309248480|gb|ADO58047.1| AAA ATPase central domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 436

 Score = 44.8 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 38/163 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++L GP G GK+ LA+I S  ++    R + +  S+  +          E ID    N +
Sbjct: 54  ILLYGPPGCGKTTLAHIISQHTQGDFVRLNAVEASVKDVR---------EVIDRAQTNKS 104

Query: 125 Q------LF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
                  LF    H  NS  Q          +++    T    +      L SR   +T+
Sbjct: 105 MYGKKTILFLDEVHRFNSSRQDALLPAVEKGTIVFIGATTENPFHYVNGALMSR---STL 161

Query: 168 VKISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQ 203
            ++     +     + +  +D        Q+ +D+    +I  
Sbjct: 162 FQLEALTQEHSLAAMRRALSDADKGLGYMQLQVDEAALDHIAS 204


>gi|292655481|ref|YP_003535378.1| cell division control protein 48 [Haloferax volcanii DS2]
 gi|291370782|gb|ADE03009.1| cell division control protein 48 [Haloferax volcanii DS2]
          Length = 736

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 36/175 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P   ++L GP G+GK+ LA   + +S           L                D     
Sbjct: 510 PPTGLLLHGPPGTGKTMLARAIAAESGVNFIHVAGPELLDRYVGESEKSVREVFDRARQA 569

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               V  ++ID +  +               +QL   +++     + +++ A     +  
Sbjct: 570 APSIVFFDEIDAIATDRDSAGSDSGVSERVVSQLLTEMDNAADNPNLVVLAATNRRDALD 629

Query: 153 VCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
             L  L   RL+  T V++  PD +    ++     D+ +  D  L   +   M+
Sbjct: 630 PAL--LRPGRLE--THVEVPAPDIEARRAILDVHVRDKPLGTDVDLGD-VATHMD 679


>gi|223984816|ref|ZP_03634926.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM
           12042]
 gi|223963225|gb|EEF67627.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM
           12042]
          Length = 443

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 22/136 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I +++++S    FS +   +  I     K     +++      T
Sbjct: 55  MIFWGPPGVGKTTLARIIAERTQSHFVDFSAVTSGIKEIKEVMNKA----ELNRQMGEKT 110

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  S +L+ A T   S+ +    L SR     V  +  
Sbjct: 111 ILFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEINAA-LLSR---CKVFVLQA 166

Query: 173 PDDDFLEKVIVKMFAD 188
              + L +++ +   D
Sbjct: 167 LATEDLTELLARALQD 182


>gi|90657569|gb|ABD96869.1| hypothetical protein [Cleome spinosa]
          Length = 635

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 40/212 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 381 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEMFVGRGAARIRELFSVARKNAP 440

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        +++ A   P +    L 
Sbjct: 441 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFETDTKVVVIVATNRPEALDPALC 500

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V +  PD +   K++     D  +  +  L   +V  +    V A  
Sbjct: 501 RPGRFSR-----KVVVGEPDQEGRRKILAVHLRDVPLEEETDLLCDLVASLTPGFVGA-D 554

Query: 215 LVDKMDNLALSRGMG----ITRSLAAEVLKET 242
           L + ++  AL         +TR    E ++  
Sbjct: 555 LANIVNESALLAARRGGETVTREDIMEAIERA 586


>gi|291616896|ref|YP_003519638.1| YcaJ [Pantoea ananatis LMG 20103]
 gi|291151926|gb|ADD76510.1| YcaJ [Pantoea ananatis LMG 20103]
          Length = 455

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 34/197 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I +    +   R S +   +  I     +      +       T
Sbjct: 61  MILWGPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERA----RLSKQAGRRT 116

Query: 125 QLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N        + H+  +   + A T   S+ +    L SR   A V  +  
Sbjct: 117 ILFVDEVHRFNKKSAGCLPAAHEDGTITFIGATTENPSFELNSA-LLSR---ARVYLLKS 172

Query: 173 PDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRM---------ERSLVFAEKLVDKMDN 221
              + +E+V+ +    ADR       L     +RM          R+L   E + D  + 
Sbjct: 173 LTTEDIEQVLDQAMQDADRGYGNSDILLPNNTRRMIAELVSGDARRALNTLEMMADMAET 232

Query: 222 LALSRGMGITRSLAAEV 238
            A      +T  L  EV
Sbjct: 233 NA-QGKRELTPQLLTEV 248


>gi|289571653|ref|ZP_06451880.1| transposase [Mycobacterium tuberculosis T17]
 gi|289545407|gb|EFD49055.1| transposase [Mycobacterium tuberculosis T17]
          Length = 251

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106
            A+R +D+        VIL GP G GK+     L +  + +    RF+  ++ L  +   
Sbjct: 93  AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 147

Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                             ++L+D    +    +   L+ +I+        L++T+   P 
Sbjct: 148 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 207

Query: 150 SW 151
           +W
Sbjct: 208 NW 209


>gi|224001338|ref|XP_002290341.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973763|gb|EED92093.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1157

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           +D  P   SRV++L GP G GKS LA+I    +        A    S    T +
Sbjct: 485 VDVRPDESSRVLLLSGPPGVGKSTLAHIVCKHAGYRPIEVNASDERSASALTER 538


>gi|75812394|ref|YP_320013.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Anabaena variabilis ATCC 29413]
 gi|75705150|gb|ABA24824.1| Recombination protein MgsA [Anabaena variabilis ATCC 29413]
          Length = 739

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + ++ +R+   +  A       I        E         T L
Sbjct: 55  LIFYGPPGTGKTTLARVIANTTRAHFLAINAVLSGVKEIRAAIDTAQEQ-RKFHNQRTIL 113

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + + ++   +
Sbjct: 114 FVDEVHRFNKSQQDALLPWVENGTVILIGATTENPYFEVNKA-LVSR---SRIFQLKALN 169

Query: 175 DDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           D+ L KV+ +   D Q       + ID +   ++V             ++
Sbjct: 170 DEDLYKVVEQTLTDEQRGYGCLKVKIDDEALKHLVNVANGDARSLLNALE 219


>gi|313221272|emb|CBY43727.1| unnamed protein product [Oikopleura dioica]
          Length = 418

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + ++++T     A SL  + I     ++          
Sbjct: 198 PPKGCLMYGPPGTGKTLLARACAAQTKATFLKLGATSLVQMFIGDGARMVRDAFALAKEK 257

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N        D+  ++ A       
Sbjct: 258 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDNVKIIAATNRIDIL 317

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++   PD +   +++      R++ +D  +
Sbjct: 318 DPAL--LRSGRLD--RKIEFPKPDQEARARIMQIHA--RKMTVDPDV 358


>gi|308184225|ref|YP_003928358.1| recombination factor protein RarA [Helicobacter pylori SJM180]
 gi|308060145|gb|ADO02041.1| recombination factor protein RarA [Helicobacter pylori SJM180]
          Length = 391

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 20/169 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLE 114
                 GP G GK+ LA I +        S  A       +            +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + + +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKNHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              L+K+  K  A  +  I+     Y++     S   A  L++ +D  A
Sbjct: 151 KSDLDKLCTKALALLKKQIEPDAKTYLLNN---SAGDARALLNLLDLSA 196


>gi|289666013|ref|ZP_06487594.1| recombination factor protein RarA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 436

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G GK+ LA + +  + +  F  I+  L    +   + VL E            
Sbjct: 41  MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 97

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 98  LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 154

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     A+R +      + +     I    +  +  A  L++    LA+
Sbjct: 155 PQDIVEALQRAL---HDAERGLGQQTIQVSEAALLEIASAADGDVRRALTLLEIAAELAM 211

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 212 GEGGEITPRTLLQVLADRTR 231


>gi|260824734|ref|XP_002607322.1| hypothetical protein BRAFLDRAFT_119205 [Branchiostoma floridae]
 gi|229292669|gb|EEN63332.1| hypothetical protein BRAFLDRAFT_119205 [Branchiostoma floridae]
          Length = 407

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 187 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKMVRDAFALAKEK 246

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIHQYDSSL---LMTARTFPVSW 151
                 ++++D +           +      +  ++N +  + S++   ++ A       
Sbjct: 247 RPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQMDGFSSTMDIKVIAATNRVDIL 306

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 307 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNFEELARCTDDFN 360

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 361 GAQLKAVCVEAGMIALRRGAT 381


>gi|188591333|ref|YP_001795932.1| transposase, IS21 family [Cupriavidus taiwanensis]
 gi|188591591|ref|YP_001796190.1| transposase, IS21 family [Cupriavidus taiwanensis]
 gi|188591657|ref|YP_001796256.1| transopsase, IS21 family [Cupriavidus taiwanensis]
 gi|188591710|ref|YP_001796309.1| transposase, IS21 family [Cupriavidus taiwanensis]
 gi|188591727|ref|YP_001796326.1| transposase, IS21 family [Cupriavidus taiwanensis]
 gi|170938728|emb|CAP63715.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424]
 gi|170938986|emb|CAP63997.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424]
 gi|170939052|emb|CAP64067.1| transopsase, IS21 family [Cupriavidus taiwanensis LMG 19424]
 gi|170939105|emb|CAP64125.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424]
 gi|170939122|emb|CAP64152.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424]
          Length = 278

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 30/150 (20%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
            F F           +V  A   A+   DSW       V++ GP G GKS L +      
Sbjct: 79  AFDFSAVP-------MVSKAHVMALASGDSWLE-KGANVLIFGPPGGGKSHLGSAIGHAL 130

Query: 89  RSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDTQ---LF 127
               +  +      I+                  +D    ++L+D+     +  +   LF
Sbjct: 131 IDAGYRVLFTRTSEIVQKLQAARQSLQLPAALAKLDRFDLIILDDLSYARKDQAETSVLF 190

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +I +      SLL+TA      W    PD
Sbjct: 191 ELI-AERYERRSLLITANQPFSGWDNVFPD 219


>gi|325289908|ref|YP_004266089.1| replicative DNA helicase loader DnaI [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965309|gb|ADY56088.1| replicative DNA helicase loader DnaI [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 241

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 25/129 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------------NIAKSLDSILIDT 107
           ++L GP GSGK+ LA   ++   + R +                   N A  +D + I  
Sbjct: 96  LLLTGPVGSGKTFLAAAIANNLVANRINLLFLVVPDMLDELRASFSKNTASEIDLLDIAR 155

Query: 108 RKPVLL-EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSR- 161
             PVL+ +D+   ++ +    +++ I+N         ++T+        V L D  CSR 
Sbjct: 156 TVPVLILDDLGAHNYTEWTKNRIYSILNYRMNEQLPTVITSNLDFGDIEVYLGDRTCSRL 215

Query: 162 LKAATVVKI 170
           L+   V K+
Sbjct: 216 LQMCRVFKL 224


>gi|294671065|ref|ZP_06735920.1| hypothetical protein NEIELOOT_02773 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307173|gb|EFE48416.1| hypothetical protein NEIELOOT_02773 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 441

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 23/153 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             D L+K+I K+ A    R   I+      +V 
Sbjct: 163 SSDDLQKLIAKVLALPEYRDFTIEADAQELLVN 195


>gi|108562846|ref|YP_627162.1| recombination factor protein RarA [Helicobacter pylori HPAG1]
 gi|107836619|gb|ABF84488.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           HPAG1]
          Length = 391

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 21/179 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLE 114
                 GP G GK+ LA I +        S  A       +            +  V ++
Sbjct: 38  PNAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   +   +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFTFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
              L+K+  K  A  +  I+     Y++     S   A  L++ +D L+      IT  
Sbjct: 151 KSDLDKLCDKALALLKKQIEPDAKTYLLNN---SAGDARALLNLLD-LSAKIENPITLK 205


>gi|307105269|gb|EFN53519.1| hypothetical protein CHLNCDRAFT_136599 [Chlorella variabilis]
          Length = 609

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 36/156 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           PS V+ L GP G+GK+ LA   + ++    F+  A     + +                 
Sbjct: 361 PSGVL-LSGPPGTGKTLLARAVAGEAGVPFFAVSASEFVELFVGRGAARIRELFGEARKK 419

Query: 111 ----VLLEDIDL------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V ++++D       +  N+       QL   ++        LL+ A   P      
Sbjct: 420 APCVVFIDELDAVGGKRGIGLNEERDQTLNQLLTELDGFEARPGVLLLAATNRPDVLDAA 479

Query: 155 L--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           L  P   SR      V + LPD++    ++      
Sbjct: 480 LMRPGRLSR-----KVVVPLPDEEARAAILAVHLRR 510


>gi|302907531|ref|XP_003049666.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730602|gb|EEU43953.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 825

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 40/194 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110
           V+LVGP G+GK+ LA   + ++    F       D I +                     
Sbjct: 379 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFTAAKSKSPAI 438

Query: 111 VLLEDIDLLDF-----NDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           V ++++D +       +         QL   ++   Q    +++ A   P      L   
Sbjct: 439 VFIDELDAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDTKIIIIGATNLPTMLDKAL--- 495

Query: 159 CSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RSLVFAEKL 215
            +R  +    V + LPD      ++      ++I +   +    +  R   RS    E  
Sbjct: 496 -TRPGRFDRHVNVELPDVRGRIAILKHHA--KKIKVSPDVDLEAVAARCPGRSGAELE-- 550

Query: 216 VDKMDNLALSRGMG 229
            + ++  AL     
Sbjct: 551 -NMLNVAALRASRA 563


>gi|302902973|ref|XP_003048760.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729694|gb|EEU43047.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 820

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 254 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 313

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 314 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 371

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 372 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 411


>gi|168049525|ref|XP_001777213.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671441|gb|EDQ57993.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 236 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 295

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 296 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 353

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +VI      + + + + +
Sbjct: 354 -PALR-RFGRFDREIDIGVPDEVGRLEVI--RIHTKNMKLAEDV 393



 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 509 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 565


>gi|150021414|ref|YP_001306768.1| Holliday junction DNA helicase RuvB [Thermosipho melanesiensis
           BI429]
 gi|172048671|sp|A6LN82|RUVB_THEM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149793935|gb|ABR31383.1| Holliday junction DNA helicase RuvB [Thermosipho melanesiensis
           BI429]
          Length = 313

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 77/201 (38%), Gaps = 35/201 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+LVGP G GK+ LA+I S++  +         L+           LE  D+L  ++   
Sbjct: 31  VLLVGPPGLGKTTLAHIISNELGTNIHVTSGPILEKQGDVAAILTNLEHGDVLFIDEI-- 88

Query: 127 FHIINSIHQYDSSLLMTA----------RTFPVSWGVCLPDL----------CS------ 160
            H +N   +    +L TA             P +  + + DL           S      
Sbjct: 89  -HRMNRSVEE---ILYTAMEDFQIDILIGKGPSARSIRI-DLQPFTLVGATTRSGLLSAP 143

Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            R +   ++++     D L K+I +      + I+K  A  + +R   +   A +L+ ++
Sbjct: 144 LRNRFGLIMELDFYSIDELSKIIERAAIVLNVEIEKDAAILLAKRSRGTPRIALRLLRRV 203

Query: 220 -DNLALSRGMGITRSLAAEVL 239
            D   +   + I   +  E++
Sbjct: 204 RDMSTIRGKVKIDIYMVEEIM 224


>gi|126179252|ref|YP_001047217.1| proteasome-activating nucleotidase [Methanoculleus marisnigri JR1]
 gi|166199293|sp|A3CV35|PAN_METMJ RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|125862046|gb|ABN57235.1| Proteasome-activating nucleotidase [Methanoculleus marisnigri JR1]
          Length = 412

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   + ++ +     +   L    I     ++ E  DL 
Sbjct: 186 PPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLA 242


>gi|315179811|gb|ADT86725.1| recombination factor protein RarA [Vibrio furnissii NCTC 11218]
          Length = 449

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
                + + + +  AD  R +          +   +        RM  +     +L+  M
Sbjct: 166 LSQTEIRQALDQAIADQERGLGKHAAHFHDNVLDRLSELVNGDARMSLNY---LELLYDM 222

Query: 220 DNLALSRGMGITRSLAAEV 238
                     IT SL AEV
Sbjct: 223 AEENEQGEKQITLSLLAEV 241


>gi|313224888|emb|CBY20680.1| unnamed protein product [Oikopleura dioica]
          Length = 418

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + ++++T     A SL  + I     ++          
Sbjct: 198 PPKGCLMYGPPGTGKTLLARACAAQTKATFLKLGATSLVQMFIGDGARMVRDAFALAKEK 257

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N        D+  ++ A       
Sbjct: 258 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDNVKIIAATNRIDIL 317

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++   PD +   +++      R++ +D  +
Sbjct: 318 DPAL--LRSGRLD--RKIEFPKPDQEARARIMQIHA--RKMTVDPDV 358


>gi|312961667|ref|ZP_07776165.1| ATPase, AAA family [Pseudomonas fluorescens WH6]
 gi|311283926|gb|EFQ62509.1| ATPase, AAA family [Pseudomonas fluorescens WH6]
          Length = 441

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 78/210 (37%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  ++K++ +  ++      RQ+ + ++    ++   +       + +
Sbjct: 155 --ARVYVLKSLDEAAMQKLLHRALSEDKGLGKRQLSVSEEGFKILLTAAD---GDGRRFL 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L +T++
Sbjct: 210 NLLENASDLAEDGGEIGVDLLQSLLGDTRR 239


>gi|255262261|ref|ZP_05341603.1| recombination factor protein RarA [Thalassiobium sp. R2A62]
 gi|255104596|gb|EET47270.1| recombination factor protein RarA [Thalassiobium sp. R2A62]
          Length = 464

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 72/197 (36%), Gaps = 27/197 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ +A + +D++     + S I   +  +            I   +   T
Sbjct: 85  LIFWGPPGVGKTTIARLLADETDLHFIQISAIFTGVPELRKVFEAA----KIRRQNGKGT 140

Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q          ++L+   T           +    SR +   + ++
Sbjct: 141 LLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAV---LSRSQVLVLERL 197

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           SL D + + +   +   DR++ +D      +++  +        L++++   A      +
Sbjct: 198 SLTDLELMTQRAEQEL-DRKLPLDGHAREALLEMADGDGRALLNLIEQV--AAWKADKPL 254

Query: 231 -TRSLAAEVLKETQQCD 246
            T +L   ++K   + D
Sbjct: 255 DTNALTKRLMKRAAKYD 271


>gi|115457548|ref|NP_001052374.1| Os04g0284600 [Oryza sativa Japonica Group]
 gi|38346432|emb|CAD40219.2| OSJNBa0019J05.17 [Oryza sativa Japonica Group]
 gi|113563945|dbj|BAF14288.1| Os04g0284600 [Oryza sativa Japonica Group]
 gi|215701044|dbj|BAG92468.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222628539|gb|EEE60671.1| hypothetical protein OsJ_14130 [Oryza sativa Japonica Group]
          Length = 357

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A+ ++ ++ +T        L   LI     ++ +
Sbjct: 147 PPKGVLLYGPPGTGKTLVAHAFASQTNATFLKLTGPQLAVKLIGEGARLVRD 198


>gi|70606569|ref|YP_255439.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
 gi|30088847|gb|AAP13472.1| AAA family ATPase [Sulfolobus acidocaldarius]
 gi|68567217|gb|AAY80146.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
          Length = 773

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + ++L GP G GK+ LA   ++++ +              +    + L  I  D +K 
Sbjct: 229 PPKGILLYGPPGVGKTLLAKAVANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 288

Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFP------ 148
               + +++ID +    ++           QL  +++ +    + +++ A   P      
Sbjct: 289 APAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPNAVDPA 348

Query: 149 --------VSWGVCLPDLCSRL 162
                       + LPD   RL
Sbjct: 349 LRRPGRFDREIEIPLPDKQGRL 370



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 502 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 533


>gi|145537570|ref|XP_001454496.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422262|emb|CAK87099.1| unnamed protein product [Paramecium tetraurelia]
          Length = 817

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                 N+ K+ +    +
Sbjct: 249 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKN 308

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 309 SPAIIFIDEIDSIAPKREKVSGEVERRVVSQLLTLMDGLKGRGQVIVIGATNRPNSID-- 366

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +++      + + + + +
Sbjct: 367 -PALR-RFGRFDREIDIGVPDEVGRMEIL--RIHTKNMKLAEDV 406


>gi|88807186|ref|ZP_01122698.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805]
 gi|88788400|gb|EAR19555.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805]
          Length = 759

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I ++ +R+   S  A       +        + ++      T L
Sbjct: 83  LILHGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVSEAGQRLERHGLR-TIL 141

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  +  L+ A T    + V    L SR   + + ++    
Sbjct: 142 FIDEVHRFNSAQQDALLPWVENGTLTLIGATTENPYFEVNKA-LVSR---SRLFRLQTLT 197

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            + L K++     D       R I ++ + AA++V             ++
Sbjct: 198 PEDLNKLLDSALKDPERGYGGRNIKLEPEAAAHLVDVASGDARSLLNALE 247


>gi|195018023|ref|XP_001984706.1| GH14878 [Drosophila grimshawi]
 gi|193898188|gb|EDV97054.1| GH14878 [Drosophila grimshawi]
          Length = 957

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 16/79 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP 110
           PSR ++L GP GSGK+ LA   + + +            +       + +  +       
Sbjct: 295 PSRGLLLHGPPGSGKTYLARAIAGQLKMPLLEVPATELIAGISGESEERIRDVFEQAIDH 354

Query: 111 ----VLLEDIDLLDFNDTQ 125
               + +++ID +  N   
Sbjct: 355 SPCVLFIDEIDAIAGNRQW 373



 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 709 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 757


>gi|321478961|gb|EFX89917.1| hypothetical protein DAPPUDRAFT_299812 [Daphnia pulex]
          Length = 430

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 71/202 (35%), Gaps = 38/202 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 210 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 269

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIHQYDSSL---LMTARTFPVSW 151
                 ++++D +           +      +  ++N +  + S+    ++ A       
Sbjct: 270 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTTDIKVIAATNRVDIL 329

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++   P+++   +++      R++ +   +    + R      
Sbjct: 330 DPAL--LRSGRLD--RKIEFPHPNEEARARIMQ--IHSRKMNVSPDVNFEELSRSTEDFN 383

Query: 211 FAEKLVDKMDNLALSRGMGITR 232
            A+     ++   ++     T 
Sbjct: 384 GAQCKAVCVEAGMIALRREATM 405


>gi|242081425|ref|XP_002445481.1| hypothetical protein SORBIDRAFT_07g020190 [Sorghum bicolor]
 gi|241941831|gb|EES14976.1| hypothetical protein SORBIDRAFT_07g020190 [Sorghum bicolor]
          Length = 792

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 60/164 (36%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G+GK+ LA   + +S +                   +N+    +     
Sbjct: 243 PPKGILLYGPPGTGKTLLARAIASESGAHFLVVNGPEIMSMMAGQSEANLRNVFEDAEKS 302

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +  N             +QL  +++ +      +++ A   P S    
Sbjct: 303 APSIIFMDEIDAIAPNRDKTHGEVERRVVSQLLTLMDGLRPRAQVVVIGATNRPNSLDPA 362

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+    +++     D  + + + +
Sbjct: 363 LR----RFGRFDRELDIGVPDEVGRLEILRIHSKD--MPLAEDV 400


>gi|229916120|ref|YP_002884766.1| ATPase AAA [Exiguobacterium sp. AT1b]
 gi|229467549|gb|ACQ69321.1| AAA ATPase central domain protein [Exiguobacterium sp. AT1b]
          Length = 752

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 33/179 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSD--------------------KSRSTRFSNIAKSLDS 102
           PS  ++  G  G+GK+ LA + ++                       +       + ++ 
Sbjct: 266 PSLHLVFTGNPGTGKTTLARLMAEIYFELGLLGRPDLVEADRSSLVGAYVGQTEEQVMNK 325

Query: 103 ILIDTRKPVLLEDIDLLDFNDT-----------QLFHIINSIHQYDSSLLMTARTFPVSW 151
           +       + +++   L   D             L   + S       +++ A       
Sbjct: 326 VKEAEGGVLFIDEAYALKRQDASGSDYGQAAIDTLVAAMTSGEYAGKFVVILAGYPEEMR 385

Query: 152 GVCL--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L  P L SR   +   ++    D+ L  +  K+  +    + ++    ++ R++R 
Sbjct: 386 HFLLANPGLRSRFPESNHYELPNYRDEELVAIGEKVAQENNYVLTEEAKRSLLARIDRE 444


>gi|327310634|ref|YP_004337531.1| AAA family ATPase [Thermoproteus uzoniensis 768-20]
 gi|326947113|gb|AEA12219.1| AAA family ATPase, possible cell division control protein cdc48
           [Thermoproteus uzoniensis 768-20]
          Length = 755

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 59/163 (36%), Gaps = 31/163 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + ++L GP G+GK+ LA   ++++ +   +     +                D    +
Sbjct: 213 PPKGILLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEAKLREIFDEAKKN 272

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 273 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQIVVIGATNRPDA---V 329

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD     +++     +  +   + +
Sbjct: 330 DPALRRPGRFDREIQIPMPDKRARREILQVHTRNMPLCTSEDV 372



 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G GK+  A   + +S +   +
Sbjct: 501 PPRGILLYGPPGVGKTMFAKAVATESGANFIA 532


>gi|298713780|emb|CBJ27152.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 453

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 60/176 (34%), Gaps = 44/176 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + ++L GP G+GK+ LA   + ++ +         L  + I     ++          
Sbjct: 226 PPKGILLHGPPGTGKTLLARACAKQTDAIFLKLAGPQLVQMFIGDGAKLVRDAFELAKEK 285

Query: 113 ------------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTAR 145
                       ++++D +                  +  ++N +      D   ++ A 
Sbjct: 286 CKDQQKGGAIIFIDELDAIGTKRFGGEQSGDREVQRTMLELLNQLDGFSSNDKIKVIAAT 345

Query: 146 TFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
             P      L  L S RL     +++  P ++   +++      R++ +DK    +
Sbjct: 346 NRPDVLDPAL--LRSGRLD--RKIELPHPSEEARGRILQ--IHSRKMNVDKSDVNF 395


>gi|217968790|ref|YP_002354024.1| ATPase AAA [Thauera sp. MZ1T]
 gi|217506117|gb|ACK53128.1| AAA ATPase central domain protein [Thauera sp. MZ1T]
          Length = 781

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 77/200 (38%), Gaps = 41/200 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTR 108
           R ++L GP G+GK+ +A   + ++                     S IA+S +S   ++ 
Sbjct: 547 RALLLYGPPGTGKTQIARTLAKEAGVAFIARSTAELKGQYLGQAASRIAQSFESARANSP 606

Query: 109 KPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
             + ++++D L                 TQL   ++ +      + + A T      V  
Sbjct: 607 AILFIDELDALTAARGSEAGDALQAEALTQLLQEMDGVRACSGLVFVVAAT--NRLDVID 664

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEK 214
             + SR   A  ++I +PD+    +++  +   R +  +  +A  +  R E  S     +
Sbjct: 665 AAVRSRF--AKQIEIGIPDEAGRAELLRVLLTGRPVAEELDVAT-LASRTEGYSGRDLGE 721

Query: 215 LVDKMDNLALSRGMGITRSL 234
           LV      A +    ++R+L
Sbjct: 722 LV------ATAFQRAVSRTL 735


>gi|78219446|gb|ABB38795.1| Recombination protein MgsA [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 375

 Score = 44.8 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 59/162 (36%), Gaps = 14/162 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120
             ++  GP G GKS +A + +  +     R S     L  +   +   + ++L+++    
Sbjct: 7   PSLLFFGPPGCGKSTIALLLARNTGQKYIRISAPEAGLQQLRKSLAGVRILVLDELHRFS 66

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                 F     + +     L+ + T   S+ V    L SR+    V+++       L  
Sbjct: 67  KAQQDFFLP---VLESGEVTLLASTTENPSFSVTRQ-LLSRM---HVLRLKPLAHSDLLT 119

Query: 181 VIVKMFADRQIFIDKKLAAYI--VQRME-RSLVFAEKLVDKM 219
           +  +    +   +   +   +  V   + R+L+   + V  +
Sbjct: 120 LARRGAEAQGAALKDDVCEMLATVAHGDARTLLNLVEYVAGL 161


>gi|161527613|ref|YP_001581439.1| ATPase AAA [Nitrosopumilus maritimus SCM1]
 gi|160338914|gb|ABX12001.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1]
          Length = 722

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 33/159 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK----P 110
           V+L GP G+GK+ LA   +++S +   S                 L  I  + R+     
Sbjct: 214 VLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEAREKAPSI 273

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           + +++ID +                 Q+  +++ +      ++++A   P +     P L
Sbjct: 274 IFVDEIDSIAPKREEVTGEVERRVVSQMLSLMDGLEARGKVIVISATNRPNAID---PAL 330

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               +    ++I +PD    + ++      R + +   +
Sbjct: 331 RRPGRFDREIEIKVPDKKGRKDIL--AIHSRNMPLSDDV 367



 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           R ++L GPSG+GK+ LA   + +S +   S     L
Sbjct: 485 RGILLHGPSGTGKTLLAKAVATQSEANFVSVRGPEL 520


>gi|310600|gb|AAA72002.1| ATPase [Sulfolobus acidocaldarius]
          Length = 780

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + ++L GP G+GK+ LA    ++  +   +               + +  I  +  + 
Sbjct: 245 PPKGILLYGPPGTGKTLLARALRNEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEEN 304

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I      +++ A   P +    
Sbjct: 305 APSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLTLMDGIKGRGRVIVIGATNRPDAID-- 362

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    + ++      R + I   +
Sbjct: 363 -PALRRPGRFDREIEIRPPDTKGRKDILQVH--TRNMPITDDV 402



 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 520 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 551


>gi|85110657|ref|XP_963567.1| hypothetical protein NCU08706 [Neurospora crassa OR74A]
 gi|9453819|emb|CAB99387.1| conserved hypothetical protein [Neurospora crassa]
 gi|28925252|gb|EAA34331.1| hypothetical protein NCU08706 [Neurospora crassa OR74A]
          Length = 622

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 38/212 (17%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDL---LVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73
           K  +P N+      +     G   D     LV         LI++        +IL G S
Sbjct: 169 KRTKPNNRSA--PLAERMRPGSLDDVFGQDLVGP-NGVLRALIETDR---VPSMILWGGS 222

Query: 74  GSGKSCLANIWSDKSRSTRFSNIA-------------KSLDSILIDTRKPVLL-EDIDLL 119
           G+GK+ +A   + ++ S      A             ++ + + +  R+ ++  ++I   
Sbjct: 223 GTGKTTIARCIAQRTGSRFIELNATSSGVAECKKYFGEAANELHLTGRRTIIFCDEIHRF 282

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFL 178
                 +F       +  +  L+ A T   S+ V  P L SR        +     DD  
Sbjct: 283 TKAQQDIFL---KPVEAGTITLIGATTENPSFKVV-PALLSR---CRTFTLQPLSRDDLQ 335

Query: 179 EKVIVKM---FADRQIF----IDKKLAAYIVQ 203
             ++  +     D+ +     ID +L +Y+  
Sbjct: 336 RILLRALKQEITDQHLPLSPLIDDELLSYLCA 367


>gi|297529246|ref|YP_003670521.1| Holliday junction DNA helicase RuvB [Geobacillus sp. C56-T3]
 gi|297252498|gb|ADI25944.1| Holliday junction DNA helicase RuvB [Geobacillus sp. C56-T3]
          Length = 333

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 80/209 (38%), Gaps = 43/209 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +L+           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLAVIIANEMGVELRATSGPALERPGDLAALLTSLEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQY--------------------DSSL--------LMTARTFPVSWGVCLPD- 157
            H +    +                       +L        L+ A T   +    L D 
Sbjct: 114 -HRLPRAVEEVLYPAMEDYCLDIAIGKGPDARTLRLDLPPFTLVGATTRAGALSAPLRDR 172

Query: 158 --LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             + SRL+   V        D L ++I +  A  QI I+++ A  + +R   +   A +L
Sbjct: 173 FGVISRLEYYHV--------DQLAQIIERAAAILQIGIEREAALELARRARGTPRIANRL 224

Query: 216 VDKMDNLALSRG-MGITRSLAAEVLKETQ 243
           + ++ + A  RG   IT  LA E L+  Q
Sbjct: 225 LRRVRDFAQVRGEGRITLPLAVEALERLQ 253


>gi|297623701|ref|YP_003705135.1| AAA ATPase central domain-containing protein [Truepera radiovictrix
           DSM 17093]
 gi|297164881|gb|ADI14592.1| AAA ATPase central domain protein [Truepera radiovictrix DSM 17093]
          Length = 439

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 18/134 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R ++L GP G GK+ LA + ++ S +      A +     +                  T
Sbjct: 45  RSLLLWGPPGVGKTTLARLLAESSGAHFVGLSAVTAGVKEVRAVAAEAA--ERRAQGGQT 102

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +  L+ A T   S+ V    L SRL+   +  +  
Sbjct: 103 LLFLDEVHRFNKAQQDLLLPFVEDGTLTLIGATTENPSFEVTGA-LRSRLQ---LFVLEP 158

Query: 173 PDDDFLEKVIVKMF 186
              + +  ++ +  
Sbjct: 159 LTQEEVRTLLTRAL 172


>gi|296089692|emb|CBI39511.3| unnamed protein product [Vitis vinifera]
          Length = 405

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++          
Sbjct: 185 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 244

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 +++ID +                  +  ++N +      D   ++ A       
Sbjct: 245 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 304

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  + S RL     ++   P ++   +++      R++ +   +    + R      
Sbjct: 305 DPAL--MRSGRLD--RKIEFPHPTEEARARILQ--IHSRKMTVHPDVNFEELARSTDDFN 358

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   L+     T
Sbjct: 359 GAQLKAVCVEAGMLALRRDAT 379


>gi|269216870|ref|ZP_06160724.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
 gi|269129677|gb|EEZ60761.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
          Length = 448

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 31/178 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA + +D++ +    FS +   +  I    ++     D        T
Sbjct: 59  MIFWGPPGVGKTTLARVIADQTEARFINFSAVTSGIKEIRTIMQEA----DAQRGLGRRT 114

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  +  L+ A T   S+ V    L SR     V  +  
Sbjct: 115 IVFVDEIHRFNKAQQDAFLPFVEKGAITLIGATTENPSFEVNGA-LLSR---CKVFVLKA 170

Query: 173 PDD----DFLEKVI--VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             +    + L++ +   + F D  + I+  L   I      S   A   +  ++   L
Sbjct: 171 LTENDVVELLKRALSDERGFGDADVRIEDDLLHAIALF---SNGDARSALSTLEMATL 225


>gi|242036895|ref|XP_002465842.1| hypothetical protein SORBIDRAFT_01g046840 [Sorghum bicolor]
 gi|241919696|gb|EER92840.1| hypothetical protein SORBIDRAFT_01g046840 [Sorghum bicolor]
          Length = 810

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 33/150 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 242 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 301

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 302 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 359

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIV 183
            P L  R  +    + I +PD+    +V+ 
Sbjct: 360 -PALR-RFGRFDREIDIGVPDEVGRLEVLR 387



 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 515 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 571


>gi|226312492|ref|YP_002772386.1| hypothetical protein BBR47_29050 [Brevibacillus brevis NBRC 100599]
 gi|226314974|ref|YP_002774870.1| hypothetical protein BBR47_53890 [Brevibacillus brevis NBRC 100599]
 gi|226095440|dbj|BAH43882.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
 gi|226097924|dbj|BAH46366.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 275

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 26/122 (21%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV-------- 111
             W ++ + L G +G GKS L +  + + R+   S +  +   ++  TRKP+        
Sbjct: 114 EEWGAKGIYLFGENGLGKSHLLSAATKELRNHGISVVYTTAKLLIAHTRKPIGKWDYLNA 173

Query: 112 -------LLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                  +++++      D+   +LF ++N   Q  S +L  +          + +L SR
Sbjct: 174 YRAADVLIIDELGAEIPADWEMGELFTVLNG-RQNRSPILYGS-------NFTVKELESR 225

Query: 162 LK 163
             
Sbjct: 226 FN 227


>gi|15082383|gb|AAH12105.1| NVL protein [Homo sapiens]
 gi|325464593|gb|ADZ16067.1| nuclear VCP-like [synthetic construct]
          Length = 659

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 100 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 159

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 160 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 219

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 220 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 259


>gi|78065552|ref|YP_368321.1| recombination factor protein RarA [Burkholderia sp. 383]
 gi|77966297|gb|ABB07677.1| Recombination protein MgsA [Burkholderia sp. 383]
          Length = 436

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +   D
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLD 164

Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           DD + +++ +    A   +  D+K    +V   +     A + ++ ++ 
Sbjct: 165 DDEMRQLLKRAQEIALDGLSFDEKAIDTLVGYAD---GDARRFLNLLEQ 210


>gi|21674448|ref|NP_662513.1| Holliday junction DNA helicase B [Chlorobium tepidum TLS]
 gi|25453272|sp|Q8KC00|RUVB_CHLTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|21647634|gb|AAM72855.1| Holliday junction DNA helicase RuvB [Chlorobium tepidum TLS]
          Length = 344

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 78/200 (39%), Gaps = 25/200 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT--------RKPVLLEDIDL 118
           V+L GP G GK+ LA+I + +   +        +D                 + +++I  
Sbjct: 56  VLLSGPPGLGKTTLAHIIAAEMGGSIKITSGPLIDKAGNLAGLLTSMKKGDILFIDEIHR 115

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCSRLKA-- 164
           L     +  ++ +++  Y   +L+ +     +  + L              L S L+A  
Sbjct: 116 LAPAVEE--YLYSAMEDYRIDILLDSGPASRAVQLKLEPFTLVGATTRAGLLTSPLRARF 173

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223
               ++   + + L+ +I++      I ID+  A  I +R   +   A +L+ +  D   
Sbjct: 174 GINSRLDYYNPELLQSIIIRAAGILNIGIDEDAAMEIARRSRGTPRIANRLLRRARDFAQ 233

Query: 224 LSRGMGITRSLAAEVLKETQ 243
           ++    I+ ++A   L+  +
Sbjct: 234 VAGDASISLAVARRTLESLE 253


>gi|297526098|ref|YP_003668122.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
 gi|297255014|gb|ADI31223.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
           12710]
          Length = 738

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 76/218 (34%), Gaps = 45/218 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + ++L GP G+GK+ LA   ++++ +   +               + L  I    +  
Sbjct: 223 PPKGILLYGPPGTGKTLLAKAVANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKN 282

Query: 109 --KPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 283 APAIIFIDEIDAIAPKRDEVMGEVERRVVAQLLALMDGLESRGDVIVIAATNRPNALD-- 340

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L    +    +++ LPD     +++      R + +   +    +  +      A  
Sbjct: 341 -PALRRPGRFDREIEVPLPDKQGRLEILQ--IHTRGMPLANDVDLNKLAEITHGYTGA-D 396

Query: 215 LVDKMDNLALSRGMGI---------TRSLAAEVLKETQ 243
           +   +   AL               T  +  EVL++ +
Sbjct: 397 IAALVKEAALHALRRYMPEIDLESETIPV--EVLEKME 432



 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 42/216 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P R ++L GP G+GK+ LA   + +S +   +                 I +      + 
Sbjct: 496 PPRGILLYGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARLY 555

Query: 107 TRKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               +  ++ID +                 +QL   ++ I++ ++ +++ A   P     
Sbjct: 556 APAVIFFDEIDAIAPARGYAFDSRVTERIVSQLLTEMDGINRLNNVVVIAATNRPDILDP 615

Query: 154 CLPDLCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER--S 208
            L      L+      ++ +  PD     ++ +     R + + K +  Y + R+    S
Sbjct: 616 AL------LRPGRFDKLIYVPPPD--LNGRIEILKIHTRNMPLAKDVDLYEIARLTEGYS 667

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
               E LV +    AL   + I +      L+   +
Sbjct: 668 GADLEALVREAAMRALKENIEINKIYMRHFLEAINE 703


>gi|260888003|ref|ZP_05899266.1| replication-associated recombination protein A [Selenomonas
           sputigena ATCC 35185]
 gi|260862254|gb|EEX76754.1| replication-associated recombination protein A [Selenomonas
           sputigena ATCC 35185]
          Length = 450

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 28/196 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +I  GP G GK+ LA I + ++++      A +     I   + V+ E      + +   
Sbjct: 62  MIFWGPPGVGKTTLARIIARETKARFIDFSAVTSG---IKEIRTVMQEAEKNTAYGERTI 118

Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           LF    H  N           +  S +L+ A T   S+ +    L SR     V  +   
Sbjct: 119 LFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEINSA-LLSR---CRVFVLKAL 174

Query: 174 DDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVD--KMDNLALS 225
             + +  ++ +       F ++++ I   L   +          A   ++   ++     
Sbjct: 175 QKEDILGLLRRALAAPEGFGNQKVEIADDLLEALAVFANGDARTALSTLEIVVLNGEVEK 234

Query: 226 RGMGITRSLAAEVLKE 241
             + +TR    + L++
Sbjct: 235 DAIKVTRETVEQCLEK 250


>gi|242083736|ref|XP_002442293.1| hypothetical protein SORBIDRAFT_08g017570 [Sorghum bicolor]
 gi|241942986|gb|EES16131.1| hypothetical protein SORBIDRAFT_08g017570 [Sorghum bicolor]
          Length = 589

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 47/209 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + ++L GP G+GK+ LA   + ++ +   +               K + +I     K 
Sbjct: 325 PVKGILLFGPPGTGKTMLAKAVATEAGANIINLSISSITSKWLGEAEKYVKAIFSLASKL 384

Query: 111 ----VLLEDIDL-LDFNDTQLFH----------IIN----SIHQYDSSLLMTARTFP--- 148
               + ++++D  L   +    H          +IN       + +   ++ A   P   
Sbjct: 385 SPAIIFVDEVDSFLGKPERPGEHEAMSEFKNEFLINWDGLHTKEQEHVTVLGATNRPFDL 444

Query: 149 -----VSWGVCLPDLCSR---LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
                    V +PD  SR   LK     ++  PD D          +    ++   L   
Sbjct: 445 GDAVIRRLMVSIPDASSREKILKVILSKEMLAPDVDLKLV-----ASMAGGYLWTDLKNL 499

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMG 229
            V    R L    +   K  +LA++ G  
Sbjct: 500 CVTAAFRPLDEIMEKEKKEKSLAIAEGRP 528


>gi|242042265|ref|XP_002468527.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor]
 gi|241922381|gb|EER95525.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor]
          Length = 780

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+      +
Sbjct: 219 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFQEAEKN 278

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 279 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVMGATNRPNSID-- 336

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +V+     +  + + + +
Sbjct: 337 -PALR-RFGRFDREIDIGVPDEVGRLEVLRVHTKN--MKLAEDV 376



 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 492 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 548


>gi|238925821|ref|YP_002939339.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
 gi|238877498|gb|ACR77205.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
          Length = 604

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 60/193 (31%), Gaps = 49/193 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++     +  +++ A   P S      
Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320

Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
                     V LPDL  R +A   V   KI   DD  L  +           +   +  
Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378

Query: 200 YIVQRMERSLVFA 212
               R  RS    
Sbjct: 379 EAALRAVRSGRAV 391


>gi|209963765|ref|YP_002296680.1| recombination factor protein RarA [Rhodospirillum centenum SW]
 gi|209957231|gb|ACI97867.1| ATPase, AAA family [Rhodospirillum centenum SW]
          Length = 432

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 22/144 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ +A + +  +    F  ++     +  D RK              T L
Sbjct: 51  MILWGPPGCGKTTIARLLAQSTD-LHFEPLSAVFSGVA-DLRKVFEAAKARRAMGQGTLL 108

Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q            +L+      P          L SR   A V  ++ 
Sbjct: 109 FIDEIHRFNRSQQDGFLPYVEDGTVTLVGATTENPSFELNAA---LLSR---AQVFVLNR 162

Query: 173 PDDDFLEKVIVKMFADRQIFIDKK 196
            D+  LEK++ +  A+    +   
Sbjct: 163 LDEAALEKLLQRAEAETGRPLPLD 186


>gi|164428754|ref|XP_957005.2| cell division cycle protein 48 [Neurospora crassa OR74A]
 gi|157072266|gb|EAA27769.2| cell division cycle protein 48 [Neurospora crassa OR74A]
          Length = 759

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 192 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 251

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 252 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 309

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 310 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLADDV 349


>gi|116309138|emb|CAH66240.1| OSIGBa0145C02.5 [Oryza sativa Indica Group]
          Length = 357

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A+ ++ ++ +T        L   LI     ++ +
Sbjct: 147 PPKGVLLYGPPGTGKTLVAHAFASQTNATFLKLTGPQLAVKLIGEGARLVRD 198


>gi|326798773|ref|YP_004316592.1| ATPase AAA [Sphingobacterium sp. 21]
 gi|326549537|gb|ADZ77922.1| AAA ATPase central domain protein [Sphingobacterium sp. 21]
          Length = 426

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 28/173 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--- 121
             +IL GP G GK+ LA I S +     F+    ++++ + D R+  ++E  +L      
Sbjct: 42  PSMILWGPPGVGKTTLAYIISKRLNRPFFN--LSAINAGVKDVRE--VIEQANLSKAMFQ 97

Query: 122 NDTQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           +   LF    H  +        S  +     L+ A T   S+ V    L SR     V  
Sbjct: 98  DQPILFIDEIHRFSKSQQDSLLSAVERGLVTLIGATTENPSFEVISA-LLSR---CQVYT 153

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLA---AYIVQRMERSLVFAEKLVDKM 219
           +   D+  L  ++ K  A+  +  +KK+       + R+  S   A KL++ +
Sbjct: 154 LKPLDESDLVTLLQKALANDPVLKEKKIIIDEHEALLRI--SGGDARKLLNVL 204


>gi|315503209|ref|YP_004082096.1| aaa atpase central domain protein [Micromonospora sp. L5]
 gi|315409828|gb|ADU07945.1| AAA ATPase central domain protein [Micromonospora sp. L5]
          Length = 496

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFND 123
           VIL GP GSGK+ +A++ +  +     +  A +     +      ++E            
Sbjct: 71  VILWGPPGSGKTTIAHLVARATDRRFVAMSALTAGVKDVRA----VIETARRQRRSGGPP 126

Query: 124 TQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  +        +  +  +  L+ A T    + V  P L SR     ++ + 
Sbjct: 127 TVLFIDEVHRFSKTQQDSLLAAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 182

Query: 172 LPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203
             DDD +  ++ +  AD R     + + ++   ++V+
Sbjct: 183 ALDDDDVRGLLRRAVADERGLGGSLVLAEEAEDHLVR 219


>gi|116789319|gb|ABK25201.1| unknown [Picea sitchensis]
          Length = 424

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++          
Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKDK 263

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A       
Sbjct: 264 SPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 323

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  + S RL     ++   P +D   +++      R++ +   +    + R      
Sbjct: 324 DPAL--MRSGRLD--RKIEFPHPTEDARARILQ--IHSRKMTVHPDVNFEELARSTDDFN 377

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   L+     T
Sbjct: 378 GAQLKAVCVEAGMLALRRDAT 398


>gi|312093422|ref|XP_003147677.1| VCP protein [Loa loa]
 gi|307757158|gb|EFO16392.1| VCP protein [Loa loa]
          Length = 622

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 40  PPRGILLYGPPGTGKTLIARAVANETGAFFFLLNGPEIMSKLAGESESNLRKAFEECEKN 99

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 100 SPAILFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVVVMAATNRPNSIDPA 159

Query: 155 L 155
           L
Sbjct: 160 L 160



 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           PSR V+  GP G GK+ LA   + + ++   S     L ++     +  + +  D   F 
Sbjct: 313 PSRGVLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKASF- 371

Query: 123 DTQLFHI 129
              LF I
Sbjct: 372 ---LFDI 375


>gi|296229993|ref|XP_002760519.1| PREDICTED: nuclear valosin-containing protein-like isoform 2
           [Callithrix jacchus]
          Length = 765

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 206 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 265

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 266 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVASTARVLVIGATNRPDSL 325

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 326 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 365


>gi|328955597|ref|YP_004372930.1| Recombination protein MgsA [Coriobacterium glomerans PW2]
 gi|328455921|gb|AEB07115.1| Recombination protein MgsA [Coriobacterium glomerans PW2]
          Length = 462

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 28/180 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112
           VIL GP+G GK+ LA I +  +RS      A S                 + +D R  + 
Sbjct: 56  VILFGPAGVGKTTLARIIAMNTRSEFIEVSAVSGTVKDLRRAIEDAKRRLLSLDRRTILF 115

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L H      +    +++ A T    + V    L SR   + +V++ 
Sbjct: 116 IDEIHRFSKSQQDTLLH----AVEDRVVVMVGATTENPFFEVNSA-LLSR---SRIVELK 167

Query: 172 LPDDDFLEKVIVKMF-ADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
              D+ +  +I +   + R +      D++    I          A   ++    +AL+ 
Sbjct: 168 PLQDEEIGALIRRALGSPRGLAGRFAADEQTVDAIALMAAGDARAALTTLELASEIALTH 227


>gi|78776412|ref|YP_392727.1| recombination factor protein RarA [Sulfurimonas denitrificans DSM
           1251]
 gi|78496952|gb|ABB43492.1| Recombination protein MgsA [Sulfurimonas denitrificans DSM 1251]
          Length = 393

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 68/164 (41%), Gaps = 20/164 (12%)

Query: 70  VGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILI--------DTRKPVLLEDIDLL 119
            GPSG+GK+ +A I +   +     F+  +  ++ +            +  + ++++  L
Sbjct: 44  FGPSGTGKTSIARIIAKTMELPFYEFNATSIKIEQLRAIFEQYKNTLQKPLIFIDEVHRL 103

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
             N  ++      + + +S+L++ A T    + +    + SR   + + ++    ++ L 
Sbjct: 104 AKNQQEVLLP---VMENNSALIIGASTENPFFSLTSA-IRSR---SMLFELHHISNEALS 156

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +++ +      I    +   Y+++    S   A  ++  ++  +
Sbjct: 157 RLLRRALDSSDITCSDEALEYLIKS---SGGDARSMLKLLEFAS 197


>gi|32473944|ref|NP_866938.1| cell division protein FtsH-like protein [Rhodopirellula baltica SH
           1]
 gi|32444481|emb|CAD74479.1| cell division protein FtsH homolog [Rhodopirellula baltica SH 1]
          Length = 485

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 29/184 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--------STRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           V+  GP G+GK+   +  +            + +   + + +    +     V++ED+DL
Sbjct: 271 VLFYGPPGTGKTHTIHHLAGSLEGHTTILISAEQVGLLGEYMTLARLLQPSMVVMEDVDL 330

Query: 119 LDFN--------DTQLFH-IINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +           +  L + ++N +       +   ++T    P +       L SR    
Sbjct: 331 IARERTSMESACEEVLLNKLLNEMDGLKEDAEIFFVLTTNR-PEALEAA---LASRPGRV 386

Query: 166 -TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223
              ++  LPD +   K++     D   F+D  + + IV+R +  S  F ++ + +     
Sbjct: 387 DQAIEFPLPDAEGRRKLVSLYAPD--GFLDADMVSEIVRRTDGVSAAFIKEFIRRATQFT 444

Query: 224 LSRG 227
           + RG
Sbjct: 445 VERG 448


>gi|225450789|ref|XP_002283831.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147844475|emb|CAN80003.1| hypothetical protein VITISV_001355 [Vitis vinifera]
          Length = 423

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++          
Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 262

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 +++ID +                  +  ++N +      D   ++ A       
Sbjct: 263 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  + S RL     ++   P ++   +++      R++ +   +    + R      
Sbjct: 323 DPAL--MRSGRLD--RKIEFPHPTEEARARILQ--IHSRKMTVHPDVNFEELARSTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   L+     T
Sbjct: 377 GAQLKAVCVEAGMLALRRDAT 397


>gi|114762698|ref|ZP_01442132.1| putative transposase [Pelagibaca bermudensis HTCC2601]
 gi|114544608|gb|EAU47614.1| putative transposase [Roseovarius sp. HTCC2601]
          Length = 233

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 24/162 (14%)

Query: 14  DKQKNDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRVVILVG 71
            +    Q ++ + Q+  +  P    ++  D       E  VR L+ +      R V+L+G
Sbjct: 37  AEINEKQARSIKYQMTIAKLPLAKEVNEFDFEETPVNETLVRVLVSAEFLEQQRNVVLIG 96

Query: 72  PSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKP-----------VLL 113
            +G+GKS LA   +        + R     ++   LD+   D R+            V+L
Sbjct: 97  GTGTGKSHLAVGIARACIRSGKRGRFFNVVDLVNKLDAEARDDRQGRIADLLCRMDFVIL 156

Query: 114 EDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
           +++  L F  T    LFH+I+ +++  +S+++T       W 
Sbjct: 157 DELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 197


>gi|78044663|ref|YP_360074.1| putative primosomal protein DnaI [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996778|gb|ABB15677.1| putative primosomal protein DnaI [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 237

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 36/158 (22%)

Query: 30  FSFPRCLGISRD-----DLLVHS--AIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCLA 81
           F          D          +  A++ A+  +    +  P + +   GP GSGK+ LA
Sbjct: 52  FDLSYYSKYHIDRERNISYYESAQRALKAAINFVKLLTTNQPVKGLYFSGPVGSGKTLLA 111

Query: 82  NIWSDKSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFND 123
            I ++++       +   +   L                    + + ++L+D+   ++ +
Sbjct: 112 AIIANEALKAGKDVLFVVVPEYLEKIKQSFGDENDGYLIEKALSTELLILDDLGAHNYTE 171

Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                L+ IIN    Y   +++T         + L DL
Sbjct: 172 WTKNTLYLIINHRLYYQLPVVITT-------NISLEDL 202


>gi|323448821|gb|EGB04715.1| hypothetical protein AURANDRAFT_70378 [Aureococcus anophagefferens]
          Length = 427

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   + ++ +         L  + I     ++ +  +L 
Sbjct: 200 PPKGVLLHGPPGTGKTLLARACAKQTDAIFLKLAGPQLVQMFIGDGAKLVRDAFELA 256


>gi|212550412|ref|YP_002308729.1| hypothetical protein CFPG_055 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548650|dbj|BAG83318.1| conserved hypothetical protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 438

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 22/141 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILIDTRKPVL- 112
            IL GP G GK+ LA I S++                     I K+ D    +  +P+L 
Sbjct: 55  FILWGPPGVGKTTLARIISNQMNIPFFMLSAVNSGLKDIGKVIDKAKDVRFFNGVRPILF 114

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++I     +    F +  +  +  + +L+ A T   S+ V  P L SR     V  +  
Sbjct: 115 IDEIHRFSKSQQD-FLL--TAVEDRTIILIGATTENPSFEVIRP-LLSR---CQVYVLKN 167

Query: 173 PDDDFLEKVIVKMF-ADRQIF 192
             ++ L  ++ K    D Q+ 
Sbjct: 168 LQNEDLLALMHKALKEDNQLR 188


>gi|33239543|ref|NP_874485.1| recombination factor protein RarA [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237068|gb|AAP99137.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 446

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 25/188 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G GK+ LA I +  +RS      A  +    I        E +       T L
Sbjct: 57  LIFHGPPGVGKTTLAKIIAANTRSYFSVLNAVLVGVKEIRKEVEDARERLGRYGLK-TIL 115

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  + +L+ A T    + V    L SR   + + +++  +
Sbjct: 116 FLDEVHRFNSAQQDALLPWVENGTFILIGATTENPYFEVNKA-LVSR---SRIFRLTPIE 171

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD-KMDNLALSR 226
              L K++V+  +D       +Q+ +    A ++V             ++  ++  A+  
Sbjct: 172 PHHLHKLLVRALSDSEKGFGKKQVKLSSDAANHLVDVANGDARSLLNALELAVETTAIDA 231

Query: 227 GMGITRSL 234
              I   L
Sbjct: 232 KGVINIDL 239


>gi|15610563|ref|NP_217944.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|148663291|ref|YP_001284814.1| ISMt2 transposase B [Mycobacterium tuberculosis H37Ra]
 gi|167968684|ref|ZP_02550961.1| transposase [Mycobacterium tuberculosis H37Ra]
 gi|215447755|ref|ZP_03434507.1| ISMt2 transposase B [Mycobacterium tuberculosis T85]
 gi|289752146|ref|ZP_06511524.1| transposase [Mycobacterium tuberculosis T92]
 gi|289755556|ref|ZP_06514934.1| transposase [Mycobacterium tuberculosis EAS054]
 gi|289759586|ref|ZP_06518964.1| transposase [Mycobacterium tuberculosis T85]
 gi|294995800|ref|ZP_06801491.1| ISMt2 transposase B [Mycobacterium tuberculosis 210]
 gi|306777767|ref|ZP_07416104.1| hypothetical protein TMAG_04005 [Mycobacterium tuberculosis
           SUMu001]
 gi|306973886|ref|ZP_07486547.1| hypothetical protein TMJG_03615 [Mycobacterium tuberculosis
           SUMu010]
 gi|307081598|ref|ZP_07490768.1| hypothetical protein TMKG_03773 [Mycobacterium tuberculosis
           SUMu011]
 gi|307086204|ref|ZP_07495317.1| hypothetical protein TMLG_03016 [Mycobacterium tuberculosis
           SUMu012]
 gi|2497395|sp|Q50701|Y3427_MYCTU RecName: Full=Putative ATP-binding protein Rv3427c in insertion
           sequence
 gi|1449360|emb|CAB01029.1| POSSIBLE TRANSPOSASE [Mycobacterium tuberculosis H37Rv]
 gi|148507443|gb|ABQ75252.1| ISMt2 transposase B [Mycobacterium tuberculosis H37Ra]
 gi|289692733|gb|EFD60162.1| transposase [Mycobacterium tuberculosis T92]
 gi|289696143|gb|EFD63572.1| transposase [Mycobacterium tuberculosis EAS054]
 gi|289715150|gb|EFD79162.1| transposase [Mycobacterium tuberculosis T85]
 gi|305662421|gb|ADM62325.1| IS1532 transposase [Mycobacterium tuberculosis]
 gi|308213901|gb|EFO73300.1| hypothetical protein TMAG_04005 [Mycobacterium tuberculosis
           SUMu001]
 gi|308356770|gb|EFP45621.1| hypothetical protein TMJG_03615 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360720|gb|EFP49571.1| hypothetical protein TMKG_03773 [Mycobacterium tuberculosis
           SUMu011]
 gi|308364339|gb|EFP53190.1| hypothetical protein TMLG_03016 [Mycobacterium tuberculosis
           SUMu012]
 gi|326905268|gb|EGE52201.1| transposase [Mycobacterium tuberculosis W-148]
          Length = 251

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106
            A+R +D+        VIL GP G GK+     L +  + +    RF+  ++ L  +   
Sbjct: 93  AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 147

Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                             ++L+D    +    +   L+ +I+        L++T+   P 
Sbjct: 148 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 207

Query: 150 SW 151
           +W
Sbjct: 208 NW 209


>gi|91779952|ref|YP_555160.1| putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
 gi|91782086|ref|YP_557292.1| putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
 gi|91782654|ref|YP_557860.1| putative transposase-associated ATP- binding protein, IstB
           [Burkholderia xenovorans LB400]
 gi|91783102|ref|YP_558308.1| putative transposase ATP-binding protein, IstB [Burkholderia
           xenovorans LB400]
 gi|91783267|ref|YP_558473.1| putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
 gi|91783375|ref|YP_558581.1| putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
 gi|91686040|gb|ABE29240.1| Putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
 gi|91686608|gb|ABE29808.1| Putative transposase-associated ATP- binding protein, IstB
           [Burkholderia xenovorans LB400]
 gi|91687056|gb|ABE30256.1| Putative transposase ATP-binding protein, IstB [Burkholderia
           xenovorans LB400]
 gi|91687221|gb|ABE30421.1| Putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
 gi|91687329|gb|ABE30529.1| Putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
 gi|91692612|gb|ABE35810.1| Putative transposase-associated ATP- binding protein [Burkholderia
           xenovorans LB400]
          Length = 283

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 27/126 (21%)

Query: 67  VILVGPSGSGKSCLANIW----------------SDKSRSTRFSNIAKSLDSIL--IDTR 108
           +IL+GPSG GKS L++                  +D  +  + +    +L+S +  +D  
Sbjct: 107 LILLGPSGGGKSHLSSAIGLSLLEKGWKVLFARTTDLVQRLQVARRELALESAINRLDRF 166

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             V+L+D   +  +  +   LF +I S      SL +TA      W    PD     +A 
Sbjct: 167 DLVILDDFAYVSKDQAETSVLFELI-SARYERRSLCITANQPFGEWDKVFPD-----RAM 220

Query: 166 TVVKIS 171
           TV  + 
Sbjct: 221 TVAAVD 226


>gi|309378598|emb|CBX22776.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 436

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R  +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVENGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDGLKKLIAKVLA 176


>gi|148259183|ref|YP_001233310.1| recombination factor protein RarA [Acidiphilium cryptum JF-5]
 gi|326402336|ref|YP_004282417.1| replication-associated recombination protein A [Acidiphilium
           multivorum AIU301]
 gi|146400864|gb|ABQ29391.1| Recombination protein MgsA [Acidiphilium cryptum JF-5]
 gi|325049197|dbj|BAJ79535.1| replication-associated recombination protein A [Acidiphilium
           multivorum AIU301]
          Length = 444

 Score = 44.8 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 35/185 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ +A + +D++        A       L  +  +  +        LL  
Sbjct: 66  LILWGPPGVGKTTIARLLADRAGLVFVQISAVFSGVADLKRVFEEAARRRRTGARTLLFV 125

Query: 122 NDTQLFHIINSIHQYDSSLLM----------TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++    H  N   Q     ++          T              L SR     V+ + 
Sbjct: 126 DEI---HRFNRAQQDGFLPVVEEGTITLVGATTENPSFELNGA---LLSR---CQVLVLR 176

Query: 172 LPDDDFLEKVIVKMFA--DRQIFIDKKLAAYIVQRMERSLVFAEKLVDK---------MD 220
             DDD LE+++ +  A   R++ +     A +    +        + ++         +D
Sbjct: 177 RLDDDALEQLLRRAEAVTARKLALTDAARAALRAMADGDGRAILNMAEQLFAANPSAPLD 236

Query: 221 NLALS 225
             AL+
Sbjct: 237 EAALA 241


>gi|259649523|dbj|BAI41685.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
          Length = 461

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 23/167 (13%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   K      +    +   + I   +        +LL++I 
Sbjct: 72  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 131

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +    +L+ A T      +  P + SR     + ++       
Sbjct: 132 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPTD 184

Query: 178 LEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +   I +  AD        Q+ +  +   Y+       L  A   ++
Sbjct: 185 ISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLE 231


>gi|256959292|ref|ZP_05563463.1| recombination factor protein RarA [Enterococcus faecalis DS5]
 gi|256949788|gb|EEU66420.1| recombination factor protein RarA [Enterococcus faecalis DS5]
 gi|315034534|gb|EFT46466.1| recombination factor protein RarA [Enterococcus faecalis TX0027]
          Length = 425

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q   R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHSTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|229549682|ref|ZP_04438407.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           ATCC 29200]
 gi|255972380|ref|ZP_05422966.1| recombination factor protein RarA [Enterococcus faecalis T1]
 gi|300861178|ref|ZP_07107265.1| recombination factor protein RarA [Enterococcus faecalis TUSoD
           Ef11]
 gi|312951281|ref|ZP_07770182.1| recombination factor protein RarA [Enterococcus faecalis TX0102]
 gi|229305162|gb|EEN71158.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis
           ATCC 29200]
 gi|255963398|gb|EET95874.1| recombination factor protein RarA [Enterococcus faecalis T1]
 gi|300850217|gb|EFK77967.1| recombination factor protein RarA [Enterococcus faecalis TUSoD
           Ef11]
 gi|310630717|gb|EFQ14000.1| recombination factor protein RarA [Enterococcus faecalis TX0102]
 gi|315152587|gb|EFT96603.1| recombination factor protein RarA [Enterococcus faecalis TX0031]
 gi|315159893|gb|EFU03910.1| recombination factor protein RarA [Enterococcus faecalis TX0312]
          Length = 425

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 36/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        ++M   T    +    P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228
             +++ I +   D  R +      L    +Q   R+        ++ ++   L+      
Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHSTRATNGDLRSALNGLE---LAVKSTPK 209

Query: 229 ------GITRSLAAE 237
                  IT  +  E
Sbjct: 210 NEQGEIKITLPIIEE 224


>gi|261344311|ref|ZP_05971955.1| replication-associated recombination protein A [Providencia
           rustigianii DSM 4541]
 gi|282567915|gb|EFB73450.1| replication-associated recombination protein A [Providencia
           rustigianii DSM 4541]
          Length = 447

 Score = 44.8 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 69/198 (34%), Gaps = 36/198 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I    +++   R S +   +  I     K       +L     T
Sbjct: 53  MILWGPPGTGKTTLAEIIGHYAQADIERLSAVTSGIKEIRESIEKA----RQNLSAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDK---KLAAYIVQRMERSLVFAEKLVDKMD 220
              D+  +E V+++  +D  R +      +     K+ A +V    R  +   +++  M 
Sbjct: 163 KSLDESEIEDVLLQALSDSTRGLGGQNIILPDSTRKMIAQLVNGDARRSLNLLEMMADMA 222

Query: 221 NLALSRGMGITRSLAAEV 238
                    +T  L  EV
Sbjct: 223 EADSQGQRVLTSDLLKEV 240


>gi|24373860|ref|NP_717903.1| recombination factor protein RarA [Shewanella oneidensis MR-1]
 gi|24348271|gb|AAN55347.1|AE015672_3 ATPase, AAA family [Shewanella oneidensis MR-1]
          Length = 445

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 34/177 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +     
Sbjct: 54  MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIRG------AIEQAQAIAQSRG 107

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 108 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 163

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I     D +  +I +  AD       R + +   +   + Q  +     A  L++ M
Sbjct: 164 IKRLSQDEIVHIITQALADTERGLGQRALNMPTDVLNKLAQLCDGDARKALNLLELM 220


>gi|199597549|ref|ZP_03210978.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|258508206|ref|YP_003170957.1| AAA family ATPase [Lactobacillus rhamnosus GG]
 gi|199591572|gb|EDY99649.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|257148133|emb|CAR87106.1| ATPase, AAA family [Lactobacillus rhamnosus GG]
          Length = 431

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 23/167 (13%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   K      +    +   + I   +        +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +    +L+ A T      +  P + SR     + ++       
Sbjct: 102 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPTD 154

Query: 178 LEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +   I +  AD        Q+ +  +   Y+       L  A   ++
Sbjct: 155 ISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLE 201


>gi|330838519|ref|YP_004413099.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329746283|gb|AEB99639.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC
           35185]
          Length = 442

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 28/196 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +I  GP G GK+ LA I + ++++      A +     I   + V+ E      + +   
Sbjct: 54  MIFWGPPGVGKTTLARIIARETKARFIDFSAVTSG---IKEIRTVMQEAEKNTAYGERTI 110

Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           LF    H  N           +  S +L+ A T   S+ +    L SR     V  +   
Sbjct: 111 LFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEINSA-LLSR---CRVFVLKAL 166

Query: 174 DDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVD--KMDNLALS 225
             + +  ++ +       F ++++ I   L   +          A   ++   ++     
Sbjct: 167 QKEDILGLLRRALAAPEGFGNQKVEIADDLLEALAVFANGDARTALSTLEIVVLNGEVEK 226

Query: 226 RGMGITRSLAAEVLKE 241
             + +TR    + L++
Sbjct: 227 DAIKVTRETVEQCLEK 242


>gi|225436170|ref|XP_002266075.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296090151|emb|CBI39970.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 21/100 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P   V+L GP G GK+ +A   + ++    +         +L+                 
Sbjct: 427 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN 486

Query: 111 ----VLLEDIDLLDFNDTQLF-----HIINSIHQYDSSLL 141
               + +++ID L      +F     H+ N+  Q   + L
Sbjct: 487 KPSVIFIDEIDALATRRQGIFSESTDHLYNAATQERETTL 526


>gi|160914951|ref|ZP_02077165.1| hypothetical protein EUBDOL_00959 [Eubacterium dolichum DSM 3991]
 gi|158433491|gb|EDP11780.1| hypothetical protein EUBDOL_00959 [Eubacterium dolichum DSM 3991]
          Length = 429

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 25/167 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +I  GP G+GK+ LA + ++            S   K LD I  +        V+++++ 
Sbjct: 45  MIFYGPPGTGKTTLAMVLANTLNKPYRLFNAVSGNKKDLDRIFEEAKYFPGLVVIVDEVH 104

Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L+ +   L   HI       D S++M   T         P + SR     + ++     
Sbjct: 105 RLNKDKQDLLLPHI------EDGSIIMIGATTSNPLHAINPAIRSR---CHLFEVKALTQ 155

Query: 176 DFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           + +++ +            ++ I++     I +     + +A  +++
Sbjct: 156 EDIKQALRNAIQSPKGLQNEVSIEEDALDIIARHCNGDIRYALNILE 202


>gi|160902803|ref|YP_001568384.1| Holliday junction DNA helicase B [Petrotoga mobilis SJ95]
 gi|160360447|gb|ABX32061.1| Holliday junction DNA helicase RuvB [Petrotoga mobilis SJ95]
          Length = 351

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 30/177 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA + S++  +         ++           LE+ D+L  ++   
Sbjct: 62  VVLAGPPGLGKTTLAYVISNELGANLQITSGPVIEKAGDLAAILTNLENGDVLFIDEI-- 119

Query: 127 FHIINSIHQYDSSLLM-------------TART------------FPVSWGVCLPDLCSR 161
            H +N   +      M             +AR+                 G+  P L SR
Sbjct: 120 -HRLNRTVEEILYSAMEDFQLDIVIGKGPSARSIRIDLQPFTLVGATTRLGLIAPPLRSR 178

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
                 V    P D  L  +I +      I I +  +  + QR   +   A +L+ +
Sbjct: 179 FGIILEVDFYSPKD--LNLIIKRSADILNIKIKEDASLILAQRSRGTPRIANRLLRR 233


>gi|39940094|ref|XP_359584.1| cell division control protein Cdc48 [Magnaporthe oryzae 70-15]
 gi|145010540|gb|EDJ95196.1| cell division control protein Cdc48 [Magnaporthe oryzae 70-15]
          Length = 820

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 372

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 373 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 412


>gi|326382142|ref|ZP_08203834.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198872|gb|EGD56054.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 453

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 30/176 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113
           V+L GP G+GK+ +A++ S  +          S   K + +++   R+ +         +
Sbjct: 64  VLLYGPPGTGKTTMASLISQATGGRFEALSALSAGVKEVRAVIDVARRRLAQGQQTVLFI 123

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L        +    LL+ A T   S+ V  P L SR   + V+++  
Sbjct: 124 DEVHRFSKTQQDALL----DAVENRIVLLVAATTENPSFSVVAP-LLSR---SLVLQLRS 175

Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             ++ +E V+ +   D R +     +  + A ++V         A + +  ++  A
Sbjct: 176 LTEEDVEAVLRRAVIDPRGLNGAVSLSDEAARHLVAVAG---GDARRALTALEASA 228


>gi|296163587|ref|ZP_06846324.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1]
 gi|295886167|gb|EFG66048.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1]
          Length = 283

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 27/126 (21%)

Query: 67  VILVGPSGSGKSCLANI---------W-------SDKSRSTRFSNIAKSLDSIL--IDTR 108
           +IL+GPSG GKS L++          W       +D  +  + +    +L+S +  +D  
Sbjct: 107 LILLGPSGGGKSHLSSAVGLSLLEKGWKVLFARTTDLVQRLQVARRELALESAINRLDRF 166

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             V+L+D   +  +  +   LF +I S      SL +TA      W    PD     +A 
Sbjct: 167 DLVILDDFAYVSKDQAETSVLFELI-SARYERRSLCITANQPFGEWDKVFPD-----RAM 220

Query: 166 TVVKIS 171
           TV  + 
Sbjct: 221 TVAAVD 226


>gi|219120710|ref|XP_002181088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407804|gb|EEC47740.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 930

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 41/176 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS-------------------TRFSNIAKSLDSI 103
           P R V+L GPSGSGK+ +A   + ++ +                   T      +  ++ 
Sbjct: 364 PPRGVLLTGPSGSGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEAN 423

Query: 104 LIDTRKPVL-LEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150
             D    ++ +++ID +                 QL  +++ +      ++M A   P  
Sbjct: 424 ADDYNGAIIFIDEIDSIAPKREKAGGEVEKRVVSQLLTLMDGLKPTSKVVVMAATNRP-- 481

Query: 151 WGVCLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
            GV  P L    R        + +PD+    +++      R + +   +   ++ R
Sbjct: 482 -GVIEPALRRPGRFDREL--DMGIPDEQGRLEILQ--IKMRDMRLSDDVDLELLAR 532



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS+ V+  GP G GK+ LA   +++  +   S
Sbjct: 641 PSKGVLFYGPPGCGKTLLAKAIANECGANFIS 672


>gi|161870104|ref|YP_001599274.1| recombination factor protein RarA [Neisseria meningitidis 053442]
 gi|161595657|gb|ABX73317.1| putative ATPase [Neisseria meningitidis 053442]
          Length = 436

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K++ K+ A
Sbjct: 163 SSDGLKKLVAKVLA 176


>gi|84489878|ref|YP_448110.1| CdcH [Methanosphaera stadtmanae DSM 3091]
 gi|84373197|gb|ABC57467.1| CdcH [Methanosphaera stadtmanae DSM 3091]
          Length = 730

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 59/164 (35%), Gaps = 43/164 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   ++++ +                     + +  +    ++   
Sbjct: 241 VLLHGPPGTGKTLLAKAVANETNAHFIVINGPEIMSKYVGGSEEQLRELFEEAEENSPSI 300

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP-- 156
           + ++++D +                 QL  +++ +      +++ A   P +    L   
Sbjct: 301 IFIDELDAIAPKREEVSGDVERRTVAQLLTLMDGLKSRGEVVVIGATNRPDAIDAALRRP 360

Query: 157 ---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              D          ++I +PD +  ++++      R + +D  +
Sbjct: 361 GRFD--------REIEIGVPDKEERKEILEVHT--RHMPLDDDV 394


>gi|15669688|ref|NP_248501.1| AAA ATPase family protein [Methanocaldococcus jannaschii DSM 2661]
 gi|3915816|sp|Q58889|PRS2_METJA RecName: Full=Putative 26S protease regulatory subunit homolog
           MJ1494
 gi|2826420|gb|AAB99505.1| AAA superfamily ATPase, similar to FtsH [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 371

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 59/170 (34%), Gaps = 34/170 (20%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108
            W  + V+  GP G+GK+ +A   + ++                  + +K +  +     
Sbjct: 151 EWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRAS 210

Query: 109 KP----VLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     V ++++D +  +                L   ++ I + +  + + A   P   
Sbjct: 211 ESAPCIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAML 270

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
               P + SR +     K+  P+D+   K++        + +   L  ++
Sbjct: 271 D---PAIRSRFEEEIEFKL--PNDEERLKIMELYAKKMPLPVKANLKEFV 315


>gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 homolog -
           Methanococcus jannaschii
          Length = 373

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 59/170 (34%), Gaps = 34/170 (20%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108
            W  + V+  GP G+GK+ +A   + ++                  + +K +  +     
Sbjct: 153 EWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRAS 212

Query: 109 KP----VLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     V ++++D +  +                L   ++ I + +  + + A   P   
Sbjct: 213 ESAPCIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAML 272

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
               P + SR +     K+  P+D+   K++        + +   L  ++
Sbjct: 273 D---PAIRSRFEEEIEFKL--PNDEERLKIMELYAKKMPLPVKANLKEFV 317


>gi|332294941|ref|YP_004436864.1| IstB domain protein ATP-binding protein [Thermodesulfobium
           narugense DSM 14796]
 gi|332295259|ref|YP_004437182.1| IstB domain protein ATP-binding protein [Thermodesulfobium
           narugense DSM 14796]
 gi|332295939|ref|YP_004437862.1| IstB domain protein ATP-binding protein [Thermodesulfobium
           narugense DSM 14796]
 gi|332178044|gb|AEE13733.1| IstB domain protein ATP-binding protein [Thermodesulfobium
           narugense DSM 14796]
 gi|332178362|gb|AEE14051.1| IstB domain protein ATP-binding protein [Thermodesulfobium
           narugense DSM 14796]
 gi|332179042|gb|AEE14731.1| IstB domain protein ATP-binding protein [Thermodesulfobium
           narugense DSM 14796]
          Length = 258

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 39/141 (27%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------------T 107
           ++L+GP G GK+ LA      +   R      ++  ++I                     
Sbjct: 101 ILLIGPPGVGKTHLAVAIGYAATQKRIKTKFVTMADLIIQIDTALSQNRLEQYIKKSINF 160

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +++++      N+ Q   LF I+N  ++   S+L+T     + W             
Sbjct: 161 TGLLIIDEFGYFKLNEKQSNLLFQIVNKKYETG-SILITTNLSFIRWK------------ 207

Query: 165 ATVVKISLPDDDFLEKVIVKM 185
               +I   D+     ++ ++
Sbjct: 208 ----EIFNNDEGLTTAILDRL 224


>gi|296284437|ref|ZP_06862435.1| Microtubule-severing ATPase [Citromicrobium bathyomarinum JL354]
          Length = 411

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 33  PRCLGISRDDL-----LVHSAIEQAVRLIDSW------PSWPSRVVILVGPSGSGKSCLA 81
           PR  G++ DD      +V  A E     ++         + P + ++  GP G+GK+ LA
Sbjct: 148 PREGGLTFDDFGGYKGVVARAKELIETQLERRDELEKIGARPVKGILFTGPPGTGKTHLA 207

Query: 82  NIWSDKSRSTRFS 94
            I ++++ ++ + 
Sbjct: 208 RIIANQAGASFYD 220


>gi|217074084|gb|ACJ85402.1| unknown [Medicago truncatula]
          Length = 423

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 69/201 (34%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++          
Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 262

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH--QYDSSLLMTARTFPVSWG 152
                 +++ID +                  +  ++N +     D  + +TA T      
Sbjct: 263 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVTAAT--NRAD 320

Query: 153 VCLPDL-CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
           +  P L  S RL     ++   P ++   +++      R++ +   +    + R      
Sbjct: 321 ILDPALMRSGRLD--RKIEFPHPTEEARARILQ--IHSRKMNVHPDVNFEELARSTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   L+     T
Sbjct: 377 GAQLKAVCVEAGMLALRRDAT 397


>gi|328771657|gb|EGF81696.1| hypothetical protein BATDEDRAFT_32935 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 449

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R ++L GP G+GKS LA   + ++ +T FS  +  L S  +   + ++          
Sbjct: 173 PWRGILLYGPPGTGKSYLAKAIATEADATFFSVSSADLVSKWLGESERLV---------- 222

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF +     +   S++ 
Sbjct: 223 -KQLFTL---ARENKPSIIF 238


>gi|312377117|gb|EFR24029.1| hypothetical protein AND_11685 [Anopheles darlingi]
          Length = 834

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLADDVDLEQI----AAESHGHVGA 406

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 407 DLASLC------SEAALQQIREKMD 425



 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|258515784|ref|YP_003192006.1| recombination factor protein RarA [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779489|gb|ACV63383.1| AAA ATPase central domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 422

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 43/205 (20%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           +I  GP G+GK+ LANI +   KS     + +   +  I        ++++         
Sbjct: 55  MIFFGPPGTGKTALANIIASMTKSHFETINAVMAGVGDIRR------VVDEAQKRRSYYG 108

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +     L+ + T    + V  P L SR   + + +
Sbjct: 109 EKTVLFIDEIHRFNKAQQDALLPFVENGLITLIGSTTENPMFSVNRPIL-SR---SQLYR 164

Query: 170 ISLPDDDFLEKVIVKMFADRQIFI-------DKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             L   + + +++ +   DR   +       D +   Y+    E S   A   ++ ++  
Sbjct: 165 FELLSTEAIVRLLQRALQDRNRGLGNYNTGADPEALPYLA---EISNGDARAALNALELA 221

Query: 223 ALSR------GMGITRSLAAEVLKE 241
            ++          +T +   E L++
Sbjct: 222 VITTVPEENGSRKLTLATVQEALQK 246


>gi|15679634|ref|NP_276751.1| cell division control protein Cdc48 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622767|gb|AAB86112.1| cell division control protein Cdc48 [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 732

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P + V++ GP G+GK+ LA   +++S +   +     + S  +   +             
Sbjct: 238 PPKGVLMHGPPGTGKTLLAKAVANESDAHFIAINGPEIMSKYVGGSEERLREFFEEAEEN 297

Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 298 APSIIFIDEIDAIAPKREDVSGEVERRIVAQLLTLMDGLKSRGQVVVIGATNRPDALD-- 355

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD +  ++++      R + +   +
Sbjct: 356 -PALRRPGRFDREIEIGVPDREERKEILQ--IHTRGMPLADDV 395


>gi|194227313|ref|XP_001489788.2| PREDICTED: similar to Nuclear valosin-containing protein-like
           (Nuclear VCP-like protein) (NVLp) [Equus caballus]
          Length = 1175

 Score = 44.4 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------------LDSILID 106
           P R V+L GP G GK+ LA+  + +         A                   +  + +
Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAATEVVSGVSGESEQKLRELFEQAVSN 356

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N+       L++ A   P S 
Sbjct: 357 APCILFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNAAATARVLVIGATNRPDSL 416

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
              L       +A      + + +PD+   E+++  +   R++ +  
Sbjct: 417 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPD 455


>gi|2492504|sp|Q96372|CDC48_CAPAN RecName: Full=Cell division cycle protein 48 homolog
 gi|1669660|emb|CAA70565.1| protein of AAA family [Capsicum annuum]
          Length = 805

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 360

Query: 155 L 155
           L
Sbjct: 361 L 361



 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570


>gi|330723618|gb|AEC45988.1| chromosomal replication initiation protein [Mycoplasma hyorhinis
           MCLD]
          Length = 474

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 71/180 (39%), Gaps = 28/180 (15%)

Query: 67  VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTRKPVLLED----- 115
           + L G SG GK+   +          K+     S+   +L +  +  ++ + +       
Sbjct: 170 LFLYGSSGIGKTHFLHAIGNEFIKRKKTVYYIHSSAFTTLITNWMIKKENIDINHFVETV 229

Query: 116 --IDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
              D+L F++ Q           L  I+N+  + D  +++T+   P   G       +R 
Sbjct: 230 CYADVLLFDEIQLLANKTSTMSVLLQIVNNFIENDKQIIITSDKSPEVLGGFEERFITRF 289

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219
            +  +++ S P  +   KV+      + I     +K    ++V   ++S+   E +V+++
Sbjct: 290 NSGLILEFSKPTKEDFLKVLKYKLEFQNINPEKFEKDALDFLVYN-KKSVREIEGVVNRI 348


>gi|304372806|ref|YP_003856015.1| Chromosomal replication initiator protein dnaA [Mycoplasma
           hyorhinis HUB-1]
 gi|304308997|gb|ADM21477.1| Chromosomal replication initiator protein dnaA [Mycoplasma
           hyorhinis HUB-1]
          Length = 404

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 71/180 (39%), Gaps = 28/180 (15%)

Query: 67  VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTRKPVLLED----- 115
           + L G SG GK+   +          K+     S+   +L +  +  ++ + +       
Sbjct: 100 LFLYGSSGIGKTHFLHAIGNEFIKRKKTVYYIHSSAFTTLITNWMIKKENIDINHFVETV 159

Query: 116 --IDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
              D+L F++ Q           L  I+N+  + D  +++T+   P   G       +R 
Sbjct: 160 CYADVLLFDEIQLLANKTSTMSVLLQIVNNFIENDKQIIITSDKSPEVLGGFEERFITRF 219

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219
            +  +++ S P  +   KV+      + I     +K    ++V   ++S+   E +V+++
Sbjct: 220 NSGLILEFSKPTKEDFLKVLKYKLEFQNINPEKFEKDALDFLVYN-KKSVREIEGVVNRI 278


>gi|302841577|ref|XP_002952333.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis]
 gi|300262269|gb|EFJ46476.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis]
          Length = 426

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 48/154 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 201 PPKGVLMYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 261 KACIVFFDEVDAIGGARFDDGAGGDNEVQRTMLEIVNQLDGFDARGNVKVLMATNRPDTL 320

Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKIS 171
            P               LPDL SR     + +I 
Sbjct: 321 DPALLRPGRLDRKVEFSLPDLASR---TQIFQIH 351


>gi|283777738|gb|ADB28898.1| 26S protease regulatory subunit-like protein [Lolium perenne]
          Length = 433

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +  +L 
Sbjct: 213 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFELA 269


>gi|74317514|ref|YP_315254.1| recombination factor protein RarA [Thiobacillus denitrificans ATCC
           25259]
 gi|74057009|gb|AAZ97449.1| putative helicase ATPase [Thiobacillus denitrificans ATCC 25259]
          Length = 442

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 60/171 (35%), Gaps = 21/171 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +IL GP G GK+ LA + +    +   +              + ++  +  +     + +
Sbjct: 60  MILWGPPGVGKTTLARLTAQAFGADFIAISAVLSGVKDIREAVERARMNQKLGRATILFV 119

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +      + A T   S+ V    L SR   A V  +   
Sbjct: 120 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVVGA-LLSR---AQVYVLKSL 172

Query: 174 DDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             D L +++ +   +   + +   +   +    +        L++++D  A
Sbjct: 173 TPDELGRLMQRALQELPSLKLADGVDKLLAAYADGDARKLLNLLEQLDTAA 223


>gi|60681036|ref|YP_211180.1| insertion sequence IS21-like putative ATP-binding protein
           [Bacteroides fragilis NCTC 9343]
 gi|2497390|sp|Q45120|ISTB2_BACFR RecName: Full=Insertion sequence IS21-like putative ATP-binding
           protein
 gi|10442746|gb|AAG17461.1|AF303352_2 TnpB [Bacteroides fragilis]
 gi|458313|gb|AAA21539.1| transposase TnpB [Bacteroides fragilis]
 gi|60492470|emb|CAH07240.1| insertion sequence IS21-like putative ATP-binding protein
           [Bacteroides fragilis NCTC 9343]
          Length = 263

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 28/126 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           ++LVGPSG+GK+ +A     ++    +     +L+ +L                  I   
Sbjct: 110 LLLVGPSGTGKTFIAAGLVYEAVKAGYEAYLMTLEELLTCLKTKEVSAHAMKTYKRIMKA 169

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------LC 159
           + + ++D  L      +   LF ++N   +  +SL++TA      W   L D      L 
Sbjct: 170 RLLAIDDATLFPLKREEAVLLFKLVNDFQER-TSLIITANKALTRWLETLEDEAVTAALL 228

Query: 160 SRLKAA 165
            RL   
Sbjct: 229 DRLLYC 234


>gi|312211421|emb|CBX91506.1| similar to AAA family ATPase/60S ribosome export protein Rix7
           [Leptosphaeria maculans]
          Length = 729

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 40/197 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   + +S++                 S  A     +   +  P +
Sbjct: 505 VLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQLFMRARSSVPCV 564

Query: 113 L--EDIDLLDFNDTQLFH-----IINSIHQY-------DSSLLMTARTFPVSWGVCLPDL 158
           +  ++ID L    +   H     ++N++              L+ A   P      +  L
Sbjct: 565 IFFDEIDALVPRRSTELHEASARVVNTLLTELDGLNPRQGIYLIAATNRPEMIDEAM--L 622

Query: 159 C-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----SLVFAE 213
              RL+    V++  P++      I+K    +   +D  LA   + R +     S    +
Sbjct: 623 RPGRLETLLYVELPKPEE---RVGILKALIQQGGAMDIALAE--LGRSDECNNFSGADLQ 677

Query: 214 KLVDKMDNLALSRGMGI 230
            L+ K    AL RG  I
Sbjct: 678 SLLRKAGQNALRRGSDI 694


>gi|302335826|ref|YP_003801033.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084]
 gi|301319666|gb|ADK68153.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084]
          Length = 633

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 44/141 (31%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R  +LVGP G+GK+ LA   + ++  T F         + +                   
Sbjct: 215 RGALLVGPPGTGKTLLAKAVAGEAGVTFFQISGSEFVEMFVGRGAAKVRDLFKEANKKAP 274

Query: 111 --VLLEDIDLLDF---------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW--- 151
             + +++ID +           ++      QL   ++    +   +++ A   P S    
Sbjct: 275 CIIFIDEIDAVGKKRDMSLNSNDEREQTLNQLLSEMDGFDNHKGIVVLAATNRPESLDQA 334

Query: 152 -----------GVCLPDLCSR 161
                       V LPDL  R
Sbjct: 335 LLRPGRFDRRIPVELPDLTGR 355


>gi|258596995|ref|XP_001347366.2| 26S proteasome regulatory subunit 4, putative [Plasmodium
           falciparum 3D7]
 gi|254922393|gb|AAN35279.2| 26S proteasome regulatory subunit 4, putative [Plasmodium
           falciparum 3D7]
          Length = 448

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 70/208 (33%), Gaps = 45/208 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 226 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEEH 285

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146
                 +++ID +                  +  ++N +     + D  ++M        
Sbjct: 286 APSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSL 345

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          +++  PD     ++     +   +  D  L  +++ + E
Sbjct: 346 DPALIRPGRIDRK--------IQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 397

Query: 207 RSLVFAEKLVDKMDNLALSRGM-GITRS 233
            S    + +  +   LAL      IT++
Sbjct: 398 LSGADIKAICTEAGLLALRERRMKITQA 425


>gi|238063892|ref|ZP_04608601.1| recombination factor protein rarA [Micromonospora sp. ATCC 39149]
 gi|237885703|gb|EEP74531.1| recombination factor protein rarA [Micromonospora sp. ATCC 39149]
          Length = 498

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFND 123
           VIL GP G GK+ +A++ +  +     +  A +     +      +++            
Sbjct: 74  VILWGPPGCGKTTIAHLVAHATDRRFVAMSALTAGVKDVRA----VIDTARRQRRSGGPQ 129

Query: 124 TQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  +        +  +  +  L+ A T    + V  P L SR     ++ + 
Sbjct: 130 TVLFIDEVHRFSKTQQDSLLAAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 185

Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203
             DD  +  ++ +  AD R +     ++     ++V+
Sbjct: 186 PLDDAAVRGLLRRAVADARGLAGAFTLETDAEDHLVR 222


>gi|160944440|ref|ZP_02091668.1| hypothetical protein FAEPRAM212_01950 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444222|gb|EDP21226.1| hypothetical protein FAEPRAM212_01950 [Faecalibacterium prausnitzii
           M21/2]
          Length = 280

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 35/141 (24%)

Query: 50  EQAVRLIDSWPS-WPSRVVIL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96
             A R ++ W       +  L  G  G+GKS LA   ++              +   +++
Sbjct: 111 GIARRYVEHWEDMRTDNIGCLFWGGVGTGKSYLAGCIANALMEKEIPVHMTNFALILNDL 170

Query: 97  AKSLDSI-----LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           A S ++       +     ++L+D  +    +    Q+F++I+S ++    L++T     
Sbjct: 171 AASFENRNEYISRLCRYPLLILDDFGMERGTEYGLEQVFNVIDSRYRSGKPLIVTT---- 226

Query: 149 VSWGVCLPDLC-------SRL 162
               + L DL        SR+
Sbjct: 227 ---NLTLDDLRNPEDTAHSRI 244


>gi|50426999|ref|XP_462104.1| DEHA2G13024p [Debaryomyces hansenii CBS767]
 gi|49657774|emb|CAG90590.1| DEHA2G13024p [Debaryomyces hansenii]
          Length = 427

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++          
Sbjct: 206 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 265

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A     + 
Sbjct: 266 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 325

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L  L S RL     ++  LP ++  E V+      R++  D     +  + + RS
Sbjct: 326 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLNCDNSSVNW--RELARS 375


>gi|320169867|gb|EFW46766.1| proteasome 26S ATPase subunit 3 [Capsaspora owczarzaki ATCC 30864]
          Length = 436

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 66/201 (32%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  +L GP G+GK+ +A   + ++ +T        L  + I     ++          
Sbjct: 216 PPKGCLLYGPPGTGKTLMARACAAQTNATYLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 275

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +      D   ++ A       
Sbjct: 276 APAIIFIDELDAIGTKRFDSDKAGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRIDIL 335

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  LP ++   +++      R++ +   +    + R      
Sbjct: 336 DPAL--LRSGRLD--RKIEFPLPTEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 389

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A      ++   ++     T
Sbjct: 390 GAMLKAVCVEAGMIALRREAT 410


>gi|301062625|ref|ZP_07203257.1| ATPase, AAA family [delta proteobacterium NaphS2]
 gi|300443305|gb|EFK07438.1| ATPase, AAA family [delta proteobacterium NaphS2]
          Length = 741

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 29/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121
           VI  GP G+GK+ LA + ++ +RS      A     K L   + D R+    ED   + F
Sbjct: 49  VIFHGPPGTGKTTLAMVIANTTRSRFIPLNAVLTGVKDLREAISDARRHREEEDRRTILF 108

Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            D    H  N           +  + +L+ A T    + V  P L SR   + V ++   
Sbjct: 109 VDEI--HRWNKSQQDALLPWVENGTVILVGATTENPYFSVNSP-LVSR---SRVFRLEPL 162

Query: 174 DDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               L  V+++   DR        + +      ++V         A  +++ +
Sbjct: 163 SKADLRTVLIRALTDRENGYGTLNVKVHPDALEHLVNVAG---GDARSVLNAL 212


>gi|206900704|ref|YP_002250508.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
 gi|206739807|gb|ACI18865.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12]
          Length = 431

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 37/202 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I+ GP GSGK+ L+ + +    +      A  +    +         +++L     T
Sbjct: 52  PSLIVYGPPGSGKTTLSILLAKAINAEFIELNAAIVGVQELKEALQRARRNLELYGKR-T 110

Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N +         +  + +L+  T      +       L SR     ++++
Sbjct: 111 VLFLDEIHHFNRLQQDVLLPFVEKGTIILIGATTENPFFALNTT---LLSR---CRLIEL 164

Query: 171 SLPDDDFLEKVIVKMF--ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               ++ +EK++ +     DR      + I       IV+        A   ++ ++  +
Sbjct: 165 KPLSNENIEKILRRALEDEDRGLGKKKLQITDDAIEEIVRFAN---GDARIALNTLELAS 221

Query: 224 -----LSRGM-GITRSLAAEVL 239
                L  G   I R +  EV+
Sbjct: 222 FMASPLEDGRLMIDRDVVKEVI 243


>gi|159490282|ref|XP_001703109.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii]
 gi|158270805|gb|EDO96639.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii]
          Length = 294

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   +  +  T        L    I     ++L   + +D  D  L
Sbjct: 134 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVLMATNRIDILDAAL 193

Query: 127 F 127
            
Sbjct: 194 L 194


>gi|6760428|gb|AAF28347.1| calmodulin-binding protein [Arabidopsis thaliana]
 gi|6760430|gb|AAF28348.1| calmodulin-binding protein [Arabidopsis thaliana]
          Length = 1022

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P++ V++ GP G+GK+ LA  ++  S    FS                 + +   S    
Sbjct: 417 PTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNA 476

Query: 107 TRKPVLLEDIDLLD-----FNDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           T   V ++D+D +        +         L ++++ I + D  +++ A   P S    
Sbjct: 477 TPAAVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPA 536

Query: 155 L 155
           L
Sbjct: 537 L 537


>gi|328770250|gb|EGF80292.1| hypothetical protein BATDEDRAFT_1279 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 464

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 44/195 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           V+L GP G+GK+ LA   + ++    F       D + +                     
Sbjct: 76  VLLYGPPGTGKTHLARAIAGEAGVPFFQMSGSEFDELYVGVGARRVRELFAAAKKRAPCI 135

Query: 111 VLLEDIDLLD-----FNDTQLFHIINSIHQY-------DSSLLMTARTFPVSWGVCL--P 156
           V ++++D +       + + +   +N +          +  +L+ A   P S    L  P
Sbjct: 136 VFIDELDAVGSKRSTKDQSYMRQTLNQLLVELDGFSPTEGVILIAATNTPDSLDKALVRP 195

Query: 157 ---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
              D   RL     V + LPD     +++      R + +D+ + A I+ R       A 
Sbjct: 196 GRFD---RL-----VPVPLPDVKGRTQILKVHM--RGVQMDRGVDASIIARGTPGFSGA- 244

Query: 214 KLVDKMDNLALSRGM 228
            L + +++ A+    
Sbjct: 245 DLANIINHAAIKASK 259


>gi|291402323|ref|XP_002717424.1| PREDICTED: nuclear VCP-like [Oryctolagus cuniculus]
          Length = 869

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P R V+L GP G GK+ LA+  + +         A  + S +    +             
Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELNLPILKVAAPEVVSGVSGESEQKLRELFTQAVSN 356

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               V +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 357 APCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNMPATAQVLVIGATNRPDSL 416

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
               P L    +A      + + +PD+   E+++  +   R++ + +
Sbjct: 417 D---PALR---RAGRFDREICLGIPDEASRERILQTLC--RKLRLPE 455


>gi|289619637|emb|CBI53920.1| unnamed protein product [Sordaria macrospora]
          Length = 820

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 54/207 (26%)

Query: 45  VHSAIEQAVRL-------IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97
           V +++ +AVR+       +  + + P +  +L GP G  K+  A   + +S    F+   
Sbjct: 536 VKTSLRRAVRMSTEPSHVLSRFFARPPKGFLLYGPPGCSKTMAAQAMATESGLNFFAVKG 595

Query: 98  KSLDSILIDTRKPVL----------------LEDIDLLDFNDTQ---------------- 125
             L ++ +   +  +                 ++ID +                      
Sbjct: 596 AELLNMYVGESERAVRRLFQRAREVAPSMIFFDEIDSIAGQRAGFGHGGGSSTSGGSSSG 655

Query: 126 ---LFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT---VVKISLPDDD 176
              L  ++N           +++ A   P +    L      L+      ++ +S PD++
Sbjct: 656 LNVLTTLLNEMDGFEALTGVVVLAATNRPQALDPAL------LRPGRFDELIYVSPPDEE 709

Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQ 203
               +  K    RQ+ I ++  A +  
Sbjct: 710 ARAAIFRKEAEKRQMLIGEEEIARLAT 736


>gi|301111406|ref|XP_002904782.1| cell division cycle protein 48 [Phytophthora infestans T30-4]
 gi|262095112|gb|EEY53164.1| cell division cycle protein 48 [Phytophthora infestans T30-4]
          Length = 682

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96
           P + V+L GP GSGK+ LAN  +++ R    ++ 
Sbjct: 384 PPKGVLLTGPPGSGKTHLANAIAEEVRRRGLASF 417


>gi|145258000|ref|XP_001401914.1| AAA family ATPase [Aspergillus niger CBS 513.88]
 gi|134074518|emb|CAK38812.1| unnamed protein product [Aspergillus niger]
          Length = 531

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 83/251 (33%), Gaps = 45/251 (17%)

Query: 20  QPKNKEEQLFFSFPRCLG-ISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74
           +PK    Q     P  +   + DD+    LV         LI+         +IL G  G
Sbjct: 110 KPKVSALQKAAPLPERMRPRTLDDVCGQELVGP-NGVLRGLIEQDR---VPSMILWGGPG 165

Query: 75  SGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL-EDIDLLD 120
           +GK+ +A + +    S                   + +   + +  RK ++  ++I    
Sbjct: 166 TGKTTIARVIASMVGSRFVEINSTSSGVAECKKIFSDAKSELGLTGRKTIIFCDEIHRFS 225

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
            +   +F       +     L+ A T   S+ V    L SR        +S   D+ ++ 
Sbjct: 226 KSQQDVFL---GPVESGQVTLIGATTENPSFKVQNA-LLSR---CRTFTLSKLTDEDIKS 278

Query: 181 VIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG----- 229
           ++ +              +D++L  Y+ +  +     A   ++ ++              
Sbjct: 279 ILHRALRLEGPNYSPSELVDEELIDYLARFAD---GDARTSLNLLELAMDLSKRPGMTKD 335

Query: 230 -ITRSLAAEVL 239
            I RSL   ++
Sbjct: 336 EIKRSLTKTLV 346


>gi|148240504|ref|YP_001225891.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Synechococcus sp. WH 7803]
 gi|147849043|emb|CAK24594.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Synechococcus sp. WH 7803]
          Length = 737

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I ++ +R+   S  A       +        + ++      T L
Sbjct: 61  LILHGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVSEAGQRLERHGLR-TIL 119

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  +  L+ A T    + V    L SR   + + ++    
Sbjct: 120 FIDEVHRFNSAQQDALLPWVENGTLTLIGATTENPYFEVNKA-LVSR---SRLFRLQALT 175

Query: 175 DDFLEKVI-------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
              L K++        + + DR+I I+ + AA++V             ++
Sbjct: 176 PGDLSKLLNSALKDPERGYGDRKIKIEPEAAAHLVDVASGDARSLLNALE 225


>gi|323464281|gb|ADX76434.1| ATPase AAA family protein [Staphylococcus pseudintermedius ED99]
          Length = 423

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 34/180 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   +  +          +    ++   +D   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAQAIAGSTAFKFRQLNAVTNTKKDMQMIVDEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELFPL 151

Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           D D ++  +     D  R +      ID     Y   +   S       ++ ++   LS 
Sbjct: 152 DKDDIKVALNHALEDEERGLKQFDASIDDDAFEYFATQ---SQGDVRSALNALELAVLSA 208


>gi|302680609|ref|XP_003029986.1| hypothetical protein SCHCODRAFT_57429 [Schizophyllum commune H4-8]
 gi|300103677|gb|EFI95083.1| hypothetical protein SCHCODRAFT_57429 [Schizophyllum commune H4-8]
          Length = 552

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 21/142 (14%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDT 107
           +  +  +I  GP G GK+ LA + +  + S                +   ++ +++++  
Sbjct: 115 NGAAGSMIFWGPPGCGKTTLARLIAKHTGSIFRELSATEAGIKDVRAVFEEAKNTLMLTG 174

Query: 108 RKPVL-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           RK VL L++I   +     +F       +     L+ A T   S+ +  P L SR     
Sbjct: 175 RKSVLFLDEIHRFNKAQQDIFLPY---VEQGYIQLIGATTENPSFKLVSP-LLSR---CR 227

Query: 167 VVKISLPDDDFLEKVIVKMFAD 188
           V  +    DD ++ +I      
Sbjct: 228 VFVLERLTDDDIKTIIHHAIQR 249


>gi|297529269|ref|YP_003670544.1| ATPase AAA [Geobacillus sp. C56-T3]
 gi|297252521|gb|ADI25967.1| AAA ATPase central domain protein [Geobacillus sp. C56-T3]
          Length = 431

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 22/176 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS---------NIAKSLDSILIDTRKPVLLED 115
             ++L G  G+GK+ LA   +  +     +          I +++++        + +++
Sbjct: 43  PSLLLYGEPGTGKTSLAYAIARTAGREWVAINATTAGKKEIEEAVEAARWSGNVLLFIDE 102

Query: 116 IDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           I  L+     +   H+     +     L+ A T      V  P + SR      +K   P
Sbjct: 103 IHRLNKAQQDVLLPHL-----ESGLVTLIGATTENPFHEVN-PAIRSRCGQIQQLKPLKP 156

Query: 174 DDDFLEKVIVKMFAD--RQIFIDKKLAA-YIVQRMERSLVFAEKLVDKMDNLALSR 226
           DD  L  ++ +  AD  R +     +    ++ R+  +     ++   +   A++ 
Sbjct: 157 DD--LMIILKRALADPERGVGEPPVVIDESLLWRIAEAAGGDARVALSLLEAAVAA 210


>gi|290769876|gb|ADD61648.1| putative protein [uncultured organism]
 gi|291549543|emb|CBL25805.1| phage DNA replication protein (predicted replicative helicase
           loader) [Ruminococcus torques L2-14]
          Length = 275

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 21/124 (16%)

Query: 50  EQAVRLIDSWP--SWPSRVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNI 96
             A   ++ W      +  ++L G  G+GKS  A   ++              +   +++
Sbjct: 107 GMAHSYVERWEQMKEGNHGLLLWGKVGTGKSYFAGCIANALMEQEIPVRMTNFALILNDL 166

Query: 97  AKSLDSI-----LIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFP 148
           A S +        +     ++++D  +    +  L  + N I   ++    L++T    P
Sbjct: 167 AASFEGRNEYIDRLCRYPLLIIDDFGMERGTEYGLEQVYNVIDSRYRSGKPLIVTTNHTP 226

Query: 149 VSWG 152
               
Sbjct: 227 DMLE 230


>gi|227548587|ref|ZP_03978636.1| ATP-binding protein [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079338|gb|EEI17301.1| ATP-binding protein [Corynebacterium lipophiloflavum DSM 44291]
          Length = 263

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 31/144 (21%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA---NIWSD 86
           F F     + R           A      W +  + V+ L GP G+GK+ LA    + + 
Sbjct: 81  FDFSTQPALDRA--------RIARLETGGWITEAANVIFL-GPPGTGKTHLATGLGVIAA 131

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFNDTQ---LFH 128
           +       + A    + L                     ++++++  +          F 
Sbjct: 132 RQGYRVAFDTAAGWITRLTQAHSIGGLTTLLAKLNRYHLLIIDEVGYVPIEAEAANLFFQ 191

Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152
           ++ S      SL+MT+      WG
Sbjct: 192 LV-SNRYERGSLIMTSNLPFSRWG 214


>gi|165975898|ref|YP_001651491.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875999|gb|ABY69047.1| putative ATPase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 428

 Score = 44.4 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 35/206 (16%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           S  +I  GP G GK+ LA I +    +   R S +   +  I     +      ++    
Sbjct: 31  SHSMIFWGPPGIGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTG 86

Query: 122 NDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATV 167
             T LF    H  N   Q        D +++    T              L SR   A +
Sbjct: 87  RRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKI 140

Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
             +       + +V+     D  R +     +I+  +   +   +     FA   ++ M 
Sbjct: 141 YILKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMS 200

Query: 221 NLALS--RGMGITRSLAAEVLKETQQ 244
           ++A    +G  + ++L AEVL E Q 
Sbjct: 201 DMAEISPQGKHLNKALLAEVLGERQA 226


>gi|237833247|ref|XP_002365921.1| cell division protein 48, putative [Toxoplasma gondii ME49]
 gi|211963585|gb|EEA98780.1| cell division protein 48, putative [Toxoplasma gondii ME49]
 gi|221488381|gb|EEE26595.1| cell division protein, putative [Toxoplasma gondii GT1]
 gi|221508884|gb|EEE34453.1| cell division protein, putative [Toxoplasma gondii VEG]
          Length = 811

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                SN+ ++ +    +
Sbjct: 243 PPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKN 302

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A          
Sbjct: 303 APAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIGAT---NRQNSI 359

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD+   +++      R + +   +
Sbjct: 360 DPALR-RFGRFDREIDIGVPDDNGRLEIL--RIHTRNMKLANDV 400



 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D     
Sbjct: 516 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKARAA 575

Query: 122 NDTQLF 127
           +   LF
Sbjct: 576 SPCVLF 581


>gi|297588295|ref|ZP_06946938.1| AAA family ATPase [Finegoldia magna ATCC 53516]
 gi|297573668|gb|EFH92389.1| AAA family ATPase [Finegoldia magna ATCC 53516]
          Length = 431

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 31/181 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +I  GP G+GK+ LA I S+++ S        S+  K +  ++   +  + + +   +
Sbjct: 53  PSMIFYGPPGTGKTTLAEIISNQTNSLFERLSAISSGVKDIREVISTAKNNLSMYNKKTV 112

Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            F ++    H  N           +  +  L+ A T    + V    L SR     ++++
Sbjct: 113 LFIDEI---HRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKA-LLSR---CQIIEL 165

Query: 171 SLPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRME---RS-LVFAEKLVDKMD 220
               D  +  +I       K   +  I I++K    +V       RS L   E  V+  D
Sbjct: 166 KPLTDTDIRNIIENALTEDKKLREMNIQINEKAIDVLVNSANGDARSALNALEIAVESTD 225

Query: 221 N 221
            
Sbjct: 226 Q 226


>gi|312134908|ref|YP_004002246.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774959|gb|ADQ04446.1| AAA ATPase central domain protein [Caldicellulosiruptor owensensis
           OL]
          Length = 441

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 32/175 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G+GK+ +A++ ++ +  T F  I  ++  +    R   ++E+   ++F+ T  
Sbjct: 55  IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKR---IIEEA-KIEFSQTGK 109

Query: 126 ---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
              LF    H  N +         +    +L+ A T    + V    L SR   + V ++
Sbjct: 110 KTILFIDEIHRFNKLQQDALLPSVEEGVIILIGATTENPFYEVNKA-LVSR---SLVFEL 165

Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
               ++ + K+I +   D+        I ID     +I +        A  +++ 
Sbjct: 166 FPLKEEDILKIIERAITDKENGLGELNIQIDDNAKKFIAKLSGGDARVALNILEA 220


>gi|302821103|ref|XP_002992216.1| hypothetical protein SELMODRAFT_448703 [Selaginella moellendorffii]
 gi|300139983|gb|EFJ06713.1| hypothetical protein SELMODRAFT_448703 [Selaginella moellendorffii]
          Length = 1086

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 55/204 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------STRFS----------------NIAKSLDSIL 104
           ++L GP+  GK+ LA   + +        + R                   + +++   +
Sbjct: 486 ILLYGPAACGKTQLALSLARELGENKQIQAHRVILKCAELVGEAESPTKRRLKEAVLGAI 545

Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHII---------------------NSIHQYDSSLLMT 143
                 V+L+D+D        LF I                      N+      + L T
Sbjct: 546 QHAPSLVVLDDLD-------ALFSIHEEGGVDMSATSLAEYLSDVMDNAQRTASVAFLAT 598

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
           A   P S  +    L S  +    V++  P     E ++ ++ A R     K + + +  
Sbjct: 599 AS-GPKSLPLS---LRSSGRFDFSVELEPPGIREREGILEQIIASRGFECPKTITSRVAA 654

Query: 204 RME-RSLVFAEKLVDKMDNLALSR 226
           + +       E +VD+  + + +R
Sbjct: 655 KCDGYDANDLEIMVDRALHASSAR 678


>gi|255761620|gb|ACU32853.1| cell division cycle 48 protein [Toxoplasma gondii]
          Length = 806

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                SN+ ++ +    +
Sbjct: 238 PPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKN 297

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A          
Sbjct: 298 APAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIGAT---NRQNSI 354

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD+   +++      R + +   +
Sbjct: 355 DPALR-RFGRFDREIDIGVPDDNGRLEIL--RIHTRNMKLANDV 395



 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D     
Sbjct: 511 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKARAA 570

Query: 122 NDTQLF 127
           +   LF
Sbjct: 571 SPCVLF 576


>gi|227824827|ref|ZP_03989659.1| recombination factor protein rarA [Acidaminococcus sp. D21]
 gi|226905326|gb|EEH91244.1| recombination factor protein rarA [Acidaminococcus sp. D21]
          Length = 440

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 26/153 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPV 111
            LI+         +I  GP G GK+ LA I +  +++    FS +   +  I    ++  
Sbjct: 42  NLIERDQ---ISSMIFWGPPGVGKTTLAKIIAHTTKASFITFSAVTSGIKEIRAVMQRA- 97

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLC 159
              D        T +F    H  N           +  S +L+ A T   S+ V    L 
Sbjct: 98  ---DEQTRFGQRTIVFIDEIHRFNRAQQDAFLPFVEKGSIILIGATTENPSFEVNGA-LL 153

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFAD-RQI 191
           SR     V  +     + +  ++ +   D R +
Sbjct: 154 SR---CKVFVLKELTTEDIMALLKRALTDSRGL 183


>gi|189239513|ref|XP_975553.2| PREDICTED: similar to spastin CG5977-PA [Tribolium castaneum]
          Length = 690

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 55/150 (36%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+R ++L GP G+GK+ LA   + + R+T FS  A SL S  +   + ++          
Sbjct: 447 PARGLLLFGPPGNGKTLLARAVATECRATFFSISAASLTSKYVGEGEKMVRALFAIAREL 506

Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSL---------------------LMTAR 145
                 ++++D L  ++       N+ H+    L                     +M A 
Sbjct: 507 QPSIIFIDEVDSL-LSERS-----NNEHEASRRLKTEFLVEFDGLPSNPDSERVVVMAAT 560

Query: 146 TFPVSWG------------VCLPDLCSRLK 163
             P                V LPDL +R++
Sbjct: 561 NRPQELDEAALRRFPKRVYVTLPDLETRIR 590


>gi|145607716|ref|XP_365898.2| hypothetical protein MGG_10118 [Magnaporthe oryzae 70-15]
 gi|145015240|gb|EDJ99776.1| hypothetical protein MGG_10118 [Magnaporthe oryzae 70-15]
          Length = 1337

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 67   VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
             IL GP G+GK+ LA + +  + +         +
Sbjct: 1027 AILYGPPGTGKTHLARVVAASAGTNLIVATPADI 1060


>gi|312136744|ref|YP_004004081.1| proteasome-activating nucleotidase [Methanothermus fervidus DSM
           2088]
 gi|311224463|gb|ADP77319.1| Proteasome-activating nucleotidase [Methanothermus fervidus DSM
           2088]
          Length = 410

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   + ++ +T    +A       I     ++ E  +L 
Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIKVVASEFVRKYIGEGARLVREVFELA 240


>gi|322709309|gb|EFZ00885.1| cell division control protein Cdc48 [Metarhizium anisopliae ARSEF
           23]
          Length = 818

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 252 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 369

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 370 -PALR-RFGRFDREVDIGVPDPTGRLEILQ--IHTKNMKLGDDV 409


>gi|254442732|ref|ZP_05056208.1| ATPase, AAA family protein [Verrucomicrobiae bacterium DG1235]
 gi|198257040|gb|EDY81348.1| ATPase, AAA family protein [Verrucomicrobiae bacterium DG1235]
          Length = 496

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 28/186 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             ++  GP G GK+ +A   +   KSR  R + +  ++  +         +ED D + F 
Sbjct: 111 GSLLFYGPPGCGKTSMAEAIAGETKSRFVRINAVMSNVAELREILGIARRMEDKDTVLFI 170

Query: 123 DTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           D    H  N           +  +  L+ A T    + V  P L SR   + + +++  D
Sbjct: 171 DEI--HRFNKSQQDLLLPDVEAGNIRLIGATTHNPGFYVNAP-LLSR---SHLFRLNPHD 224

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LS 225
            D +   + K   D       R+I     +   + +  +       + ++ ++ +A  L 
Sbjct: 225 VDTVAATLAKALTDEERGLGERKITAVAGVLEGLAKLCD---GDLRRGLNALEVIAMGLE 281

Query: 226 RGMGIT 231
            G  IT
Sbjct: 282 EGGEIT 287


>gi|256810841|ref|YP_003128210.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
 gi|256794041|gb|ACV24710.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
          Length = 371

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 59/170 (34%), Gaps = 34/170 (20%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108
            W  + V+  GP G+GK+ +A   + ++                  + +K +  +     
Sbjct: 151 EWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRAS 210

Query: 109 KP----VLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     V ++++D +  +                L   ++ I + +  + + A   P   
Sbjct: 211 ESAPCIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAML 270

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
               P + SR +     K+  P+D+   K++        I +   L  ++
Sbjct: 271 D---PAIRSRFEEEIEFKL--PNDEERLKIMELYAKKMPIPVKANLKEFV 315


>gi|77360654|ref|YP_340229.1| recombination factor protein RarA [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875565|emb|CAI86786.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas haloplanktis TAC125]
          Length = 447

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I ++ + +      A +     I        E++       T +
Sbjct: 52  LILWGPPGVGKTTLAQIIANHADAALIQMSAVTAGVKDIRDSVTQARENLQS-RGQRTLM 110

Query: 127 F----HIINSIHQY 136
           F    H  N   Q 
Sbjct: 111 FVDEVHRFNKSQQD 124


>gi|124511780|ref|XP_001349023.1| cell division cycle ATPase, putative [Plasmodium falciparum 3D7]
 gi|45645005|sp|P46468|CDAT_PLAF7 RecName: Full=Putative cell division cycle ATPase
 gi|23498791|emb|CAD50861.1| cell division cycle ATPase, putative [Plasmodium falciparum 3D7]
          Length = 1229

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 43/141 (30%)

Query: 64   SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107
            ++ ++L GP G GK+ LA   +++ ++   S                N+    D     +
Sbjct: 968  NKGILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAS 1027

Query: 108  RKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152
               +  ++ID L                  Q+   I+ I++  +  ++ A   P      
Sbjct: 1028 PCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 1087

Query: 153  ------------VCLPDLCSR 161
                        + LPDL SR
Sbjct: 1088 LTRPGRLDKLIYISLPDLKSR 1108


>gi|327264770|ref|XP_003217184.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Anolis
           carolinensis]
          Length = 975

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 398 PPRGILLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 457

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 458 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNSIDPA 517

Query: 155 L 155
           L
Sbjct: 518 L 518



 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 671 PSRGVLFYGPPGCGKTLLAKAIANECQANFVSIKGPELLTMWFGESEANVRDVFDKA 727


>gi|309810782|ref|ZP_07704588.1| recombination factor protein RarA [Dermacoccus sp. Ellin185]
 gi|308435262|gb|EFP59088.1| recombination factor protein RarA [Dermacoccus sp. Ellin185]
          Length = 457

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 32/191 (16%)

Query: 54  RLIDSWPSWPSRV-VILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKP 110
           RLI+        +  IL GP G+GK+ LA++ ++ +  R    S I   +  +     + 
Sbjct: 54  RLIEGQAGAAGPMSAILWGPPGTGKTTLAHLAANSAERRFVELSAITAGVKDVRQAMEEA 113

Query: 111 ------------VLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                       + L++I          L        +  + +L+ A T   S+ V  P 
Sbjct: 114 GRHLAMYGRSTVLFLDEIHRFSKAQQDALL----PGVENRTVILVAATTENPSFSVIAP- 168

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFA 212
           L SR   + +V ++  DD  +  VI     D R +     +D     ++V RM  +   A
Sbjct: 169 LLSR---SVLVTLTSLDDAQIADVIGAALVDERGLDERFTLDDDARDHLV-RM--AGGDA 222

Query: 213 EKLVDKMDNLA 223
            + +  ++  A
Sbjct: 223 RRALTALEAGA 233


>gi|290956155|ref|YP_003487337.1| restriction protein [Streptomyces scabiei 87.22]
 gi|260645681|emb|CBG68772.1| putative restriction enzyme [Streptomyces scabiei 87.22]
          Length = 604

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 30  FSFPRCLGISRDDLLVHSA--IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
              P        DLLVH A  + +   L+     W  R ++L GP G+GK+ LA
Sbjct: 318 LELPEPTDELAADLLVHDAEWLREVRDLL-----WDERQLVLYGPPGTGKTYLA 366


>gi|295402804|ref|ZP_06812740.1| IstB domain protein ATP-binding protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|295402902|ref|ZP_06812826.1| IstB domain protein ATP-binding protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109433|ref|YP_003987749.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312109577|ref|YP_003987893.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312109798|ref|YP_003988114.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312110830|ref|YP_003989146.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312110848|ref|YP_003989164.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312111361|ref|YP_003989677.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312111373|ref|YP_003989689.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312111416|ref|YP_003989732.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312111472|ref|YP_003989788.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312111599|ref|YP_003989915.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312111955|ref|YP_003990271.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312111957|ref|YP_003990273.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312112242|ref|YP_003990558.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312112419|ref|YP_003990735.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|312112549|ref|YP_003990865.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|294975060|gb|EFG50714.1| IstB domain protein ATP-binding protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975150|gb|EFG50792.1| IstB domain protein ATP-binding protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214534|gb|ADP73138.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311214678|gb|ADP73282.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311214899|gb|ADP73503.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311215931|gb|ADP74535.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311215949|gb|ADP74553.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311216462|gb|ADP75066.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311216474|gb|ADP75078.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311216517|gb|ADP75121.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311216573|gb|ADP75177.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311216700|gb|ADP75304.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311217056|gb|ADP75660.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311217058|gb|ADP75662.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311217343|gb|ADP75947.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311217520|gb|ADP76124.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311217650|gb|ADP76254.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
          Length = 246

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 24/125 (19%)

Query: 67  VILVGPSGSGKSCLANIW-------SDKSRSTRFSNIAKSLDSILIDTRKPVL---LEDI 116
           V+L+G  G+GK+ LA            + R  R +++   L+  L +   P L   +E  
Sbjct: 96  VLLLGSPGTGKTHLATALGLKACEKGHEVRFFRVADLVAQLEEALKNGTLPRLKRQIETC 155

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +LL  ++             LFHII   ++   S+++T+      W     D  +RL AA
Sbjct: 156 ELLILDELGYVPFQKQGSELLFHIIADCYER-KSVIVTSNLEFGQWNRVFGD--NRLTAA 212

Query: 166 TVVKI 170
            V ++
Sbjct: 213 LVDRL 217


>gi|189460625|ref|ZP_03009410.1| hypothetical protein BACCOP_01266 [Bacteroides coprocola DSM 17136]
 gi|189432584|gb|EDV01569.1| hypothetical protein BACCOP_01266 [Bacteroides coprocola DSM 17136]
          Length = 342

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 31/202 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L+NI +++            LD           LE  D+L  ++   
Sbjct: 58  VLLHGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHR 117

Query: 127 F------HIINSIHQYDSSLLMTARTFPVSWGVCLPDL----------CS-------RLK 163
                  ++ +++  Y   +++     P +  + L DL           S       R +
Sbjct: 118 LSPVVEEYLYSAMEDYRIDIMI--DKGPSARSIQL-DLNPFTLVGATTRSGLLTAPLRAR 174

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDKMD 220
               + +   DD  L ++I++  +   I  D   A  I  R     R      + V   D
Sbjct: 175 FGINLHLEYYDDAVLSRIILRSASILGIPCDVDAAGEIASRSRGTPRIANALLRRVR--D 232

Query: 221 NLALSRGMGITRSLAAEVLKET 242
              +     I   +A   L+  
Sbjct: 233 FAQVKGSGRIDVEIARYALEAL 254


>gi|325963405|ref|YP_004241311.1| recombination protein MgsA [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469492|gb|ADX73177.1| Recombination protein MgsA [Arthrobacter phenanthrenivorans Sphe3]
          Length = 472

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 24/180 (13%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDID 117
           P+ P+  +IL GP G+GK+ LA++ +          S I   +  +     + +   D+ 
Sbjct: 76  PAGPTS-LILWGPPGTGKTTLAHVIARGPGRKFVELSAITAGVKDVRRVMDEALTARDLY 134

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
                 T LF    H  N           +    +L+ A T   S+ V  P     L  +
Sbjct: 135 KTT---TVLFLDEIHRFNKAQQDALLPGVENRWVVLVAATTENPSFSVVSPL----LSRS 187

Query: 166 TVVKISLPDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223
            ++ +    D  +E +I +  AD R +     L+A  ++ + R S   A + +  ++  A
Sbjct: 188 LLLTLRPLTDADIEGLIQRAVADPRGLSGKVDLSAEALEHLVRLSGGDARRALTALEAAA 247


>gi|188589876|ref|YP_001920352.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E3 str.
           Alaska E43]
 gi|238689662|sp|B2V338|RUVB_CLOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|188500157|gb|ACD53293.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 344

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 27/201 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +           +++           L+D D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLANIIAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEI-- 112

Query: 127 FHIINSIHQ-------YDSSL--LMTARTFPVSWGVCLPD------------LCS--RLK 163
            H +N   +        D +L  ++       S  + LP             L S  R +
Sbjct: 113 -HRLNRSVEEILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDR 171

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
              +  +   D++ L++++++  A     I ++ A  I  R   +   A +L+ ++ D  
Sbjct: 172 FGVLCAMEYYDENQLKEIVIRSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYS 231

Query: 223 ALSRGMGITRSLAAEVLKETQ 243
            +     I+   A E L+  +
Sbjct: 232 EVKSNTVISLKEAREALELLE 252


>gi|154345666|ref|XP_001568770.1| Transitional endoplasmic reticulum ATPase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066112|emb|CAM43901.1| putative transitional endoplasmic reticulum ATPase [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 785

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 227 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAERN 286

Query: 107 TRKPVLLEDIDLLD 120
               + +++ID + 
Sbjct: 287 APAIIFIDEIDSIA 300



 Score = 37.8 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+  GP G GK+ LA   + + ++   S     L ++     +  + +  D  
Sbjct: 500 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 556


>gi|21492917|ref|NP_659992.1| transposase [Rhizobium etli CFN 42]
 gi|21467342|gb|AAM55005.1| probable insertion sequence transposase protein [Rhizobium etli CFN
           42]
 gi|327192825|gb|EGE59751.1| transposase [Rhizobium etli CNPAF512]
          Length = 297

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 23/134 (17%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------WS-------DKS 88
           +  A   A+   DSW +  + +++  GP G GKS LA           W        D  
Sbjct: 88  ISKAQVMAITAGDSWLAKGANILM-FGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV 146

Query: 89  RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143
           +  + +     L+S +  ++    ++L+D+  +  +  +   LF +I S      S+L+T
Sbjct: 147 QKLQVARRELQLESAIDKLNRYDLLILDDLAYVTKDQAETSVLFELI-SARYEHRSILIT 205

Query: 144 ARTFPVSWGVCLPD 157
           A      W    PD
Sbjct: 206 ANQPFGEWNRVFPD 219


>gi|121726259|ref|ZP_01679549.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|229515491|ref|ZP_04404950.1| ATPase AAA family [Vibrio cholerae TMA 21]
 gi|229529802|ref|ZP_04419192.1| ATPase AAA family [Vibrio cholerae 12129(1)]
 gi|121631205|gb|EAX63578.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|229333576|gb|EEN99062.1| ATPase AAA family [Vibrio cholerae 12129(1)]
 gi|229347260|gb|EEO12220.1| ATPase AAA family [Vibrio cholerae TMA 21]
 gi|327483813|gb|AEA78220.1| ATPase, AAA family [Vibrio cholerae LMA3894-4]
          Length = 449

 Score = 44.4 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            +   + + + +  AD  R +          +   +        RM  + +     + + 
Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225

Query: 220 DNLALSRGMGITRSLAAEV 238
           D+        I   L AEV
Sbjct: 226 DD---QGRKQIDLPLLAEV 241


>gi|328463405|gb|EGF35073.1| AAA family ATPase [Lactobacillus rhamnosus MTCC 5462]
          Length = 305

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 68  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 127

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +    +L+ A T      +  P + SR     + ++       
Sbjct: 128 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPTD 180

Query: 178 LEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +   I +  AD        Q+ +  +   Y+       L  A   ++
Sbjct: 181 ISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLE 227


>gi|303229442|ref|ZP_07316232.1| recombination factor protein RarA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230800|ref|ZP_07317547.1| recombination factor protein RarA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514560|gb|EFL56555.1| recombination factor protein RarA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515978|gb|EFL57930.1| recombination factor protein RarA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 434

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 30/157 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++  GP G+GK+ LA I +  S S   +    + ++ + + R   ++ED      +  
Sbjct: 51  PSMLFYGPCGTGKTTLAGIIAKMSNSHFVN--LNATNAGIGELRN--IIEDARKRVRSLQ 106

Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           Q   LF    H  N           +  + +L+ A T    + V  P L SRL+   ++ 
Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199
           +       + +++ +   D       R + +  +L  
Sbjct: 163 LEALTPKAISQILKRALTDSEVGLGARNLQVKDELLE 199


>gi|254225502|ref|ZP_04919112.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125621972|gb|EAZ50296.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 449

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            +   + + + +  AD  R +          +   +        RM  + +     + + 
Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225

Query: 220 DNLALSRGMGITRSLAAEV 238
           D+        I   L AEV
Sbjct: 226 DD---QGRKQIDLPLLAEV 241


>gi|160934233|ref|ZP_02081620.1| hypothetical protein CLOLEP_03104 [Clostridium leptum DSM 753]
 gi|156866906|gb|EDO60278.1| hypothetical protein CLOLEP_03104 [Clostridium leptum DSM 753]
          Length = 319

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-------EDID 117
           +V++L GPSGSGK+  A I     +    S +  SLD   +   K  +L       EDI 
Sbjct: 56  KVIMLSGPSGSGKTTTARILQKLLKEKGVSAVQISLDDFFMGEGKAPILDSGEYDYEDIR 115

Query: 118 LLDFNDTQ--LFHIINS 132
            L+    +  L  + N 
Sbjct: 116 ALNLEQVENCLLDLSNR 132


>gi|11493971|gb|AAG35725.1|AF208046_1 RuvB-like RUVBL1 [Mus musculus]
          Length = 445

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 42  PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 96

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 97  SFFKRKTILFIDEIHRFNKSQQD 119


>gi|83593992|ref|YP_427744.1| recombination factor protein RarA [Rhodospirillum rubrum ATCC
           11170]
 gi|83576906|gb|ABC23457.1| Recombination protein MgsA [Rhodospirillum rubrum ATCC 11170]
          Length = 439

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 26/147 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           V+L GP G GK+ +A + +D +                L  I    R+   +    LL  
Sbjct: 51  VVLWGPPGCGKTTIARLLADSTDLHFEPLSAVFAGVADLRKIFTAARERRTVGRGTLLFI 110

Query: 122 NDTQLFHIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++    H  N   Q          ++++   T              L SR     V+ + 
Sbjct: 111 DEI---HRFNRAQQDGFLPYVEDGTVVLVGATTENPSFELNAA---LLSR---CQVLVLR 161

Query: 172 LPDDDFLEKVIVKMFAD--RQIFIDKK 196
             DD  LE +I +  A+  R + +  +
Sbjct: 162 RLDDAALETLIARAEAECGRSLPLSAE 188


>gi|37679508|ref|NP_934117.1| recombination factor protein RarA [Vibrio vulnificus YJ016]
 gi|37198252|dbj|BAC94088.1| putative ATPase protein [Vibrio vulnificus YJ016]
          Length = 449

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 34/197 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-----------SLVFAEKLVDKMDN 221
            + + +   + +   D+Q  +    A +    ++R           SL + E L D  ++
Sbjct: 166 LNKEEISLALNQAINDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAED 225

Query: 222 LALSRGMGITRSLAAEV 238
            A      IT  L AEV
Sbjct: 226 NA-QGEKAITLKLLAEV 241


>gi|325959789|ref|YP_004291255.1| AAA family ATPase [Methanobacterium sp. AL-21]
 gi|325331221|gb|ADZ10283.1| AAA family ATPase, CDC48 subfamily [Methanobacterium sp. AL-21]
          Length = 729

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 59/166 (35%), Gaps = 39/166 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTR 108
           P + V++ GP G+GK+ LA   +++S +                 S           +  
Sbjct: 236 PPKGVLMHGPPGTGKTLLAKAVANESDAHFIAINGPEIMSKYVGGSEERLRELFEEAEEN 295

Query: 109 KP--VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            P  + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 296 APSIIFIDEIDAIAPKREEVSGEVERRTVAQLLTLMDGLKSRGQVVVIGATNRPDALDAA 355

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           +       +       ++I +PD D   +V+      R + +D K+
Sbjct: 356 IR------RGGRFDREIEIGVPDKDGRGEVLQ--IHTRGMPLDDKV 393



 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R V++ GP G+GK+ LA   +++S +   +     L
Sbjct: 508 PPRGVLIYGPPGTGKTLLAKAVANESDANFIAVKGPEL 545


>gi|257464659|ref|ZP_05629030.1| AAA family ATPase, CDC48 subfamily protein [Actinobacillus minor
           202]
 gi|257450319|gb|EEV24362.1| AAA family ATPase, CDC48 subfamily protein [Actinobacillus minor
           202]
          Length = 545

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 28/117 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDTRKP 110
           ++L GP GSGK+ +A   + ++ +   S  +  +                D         
Sbjct: 59  ILLYGPPGSGKTLIARAVAAETDAHFISVNSAEIIRQHYGESEQRLREIFDEAKDYPYSI 118

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           +  ++ID L  N              +L  +++ +    + ++++A   P +    L
Sbjct: 119 LFFDEIDALAPNREEVAGDAEKRLVSELLALMDGVKSRGNIVIISATNLPNNLDPAL 175


>gi|224002178|ref|XP_002290761.1| transitional endoplasmic reticulum [Thalassiosira pseudonana
           CCMP1335]
 gi|220974183|gb|EED92513.1| transitional endoplasmic reticulum [Thalassiosira pseudonana
           CCMP1335]
          Length = 818

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 65/171 (38%), Gaps = 42/171 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP GSGK+ +A   ++++ +  +                 N+ K+ +    +
Sbjct: 246 PPQGVLLYGPPGSGKTLIARAIANETGAFFYLINGPEIMSKGSGESEGNLRKAFEEAAKN 305

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSS-------LLMTARTF 147
               V +++ID +                 QL  +++ +H   +        L++ A   
Sbjct: 306 APAIVFIDEIDCIAPKRDKINGEVERRVVSQLLTLMDGMHSGPTRSSSLKPVLVIAATNR 365

Query: 148 PVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           P +  + L     R  +    + + +PD+    +++      R + +D  +
Sbjct: 366 PNAIDLSLR----RFGRFDREIDLGVPDEIGRLEIL--HIHTRSMKLDDSV 410


>gi|270010589|gb|EFA07037.1| hypothetical protein TcasGA2_TC010011 [Tribolium castaneum]
          Length = 625

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 55/150 (36%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+R ++L GP G+GK+ LA   + + R+T FS  A SL S  +   + ++          
Sbjct: 382 PARGLLLFGPPGNGKTLLARAVATECRATFFSISAASLTSKYVGEGEKMVRALFAIAREL 441

Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSL---------------------LMTAR 145
                 ++++D L  ++       N+ H+    L                     +M A 
Sbjct: 442 QPSIIFIDEVDSL-LSERS-----NNEHEASRRLKTEFLVEFDGLPSNPDSERVVVMAAT 495

Query: 146 TFPVSWG------------VCLPDLCSRLK 163
             P                V LPDL +R++
Sbjct: 496 NRPQELDEAALRRFPKRVYVTLPDLETRIR 525


>gi|115958544|ref|XP_001190690.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 339

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 119 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 178

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +      +   ++ A       
Sbjct: 179 LPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSSEEIKVIAATNRVDIL 238

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++   P+++   +++      R++ +   +    + R      
Sbjct: 239 DPAL--LRSGRLD--RKIEFPAPNEEARARIMQ--IHSRKMNVGADVNFEELARCTDDFN 292

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 293 GAQCKAVCVEAGMIALRRGAT 313


>gi|45185047|ref|NP_982764.1| ABL183Wp [Ashbya gossypii ATCC 10895]
 gi|44980683|gb|AAS50588.1| ABL183Wp [Ashbya gossypii ATCC 10895]
          Length = 547

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 29/184 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----VLLEDID--- 117
             +IL GP G GK+ LA + S    +   + I   L               + ++     
Sbjct: 143 PSMILWGPPGVGKTSLARLLSKTVNARPQAKITYQLVETSATKANAQELRTVFDNAKKEF 202

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
            L    T LF    H  N           +    +L+ A T   S+ +    L SR    
Sbjct: 203 RLTKRMTVLFVDEIHRFNKGQQDLLLPYVESGGIVLIGATTENPSFQLNNA-LLSR---C 258

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            V  ++   +D + +V+      R I +  K    + +   R L    + ++ ++ +A+ 
Sbjct: 259 QVFVLNKLTEDEMNRVLT-----RGIAMLNKCRRLLWEN-PRPLKLEMECIEYINRVAVG 312

Query: 226 RGMG 229
               
Sbjct: 313 DTRK 316


>gi|260220658|emb|CBA28419.1| Replication-associated recombination protein A [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 431

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 24/194 (12%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
           IL GP G GK+ +A + +D   +   +  A       I       L   D L+   T +F
Sbjct: 49  ILWGPPGVGKTTIARLMADAFDAQFITISAVLGGIKEIREAVDQALNARDGLEQRRTIIF 108

Query: 128 ----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
               H  N           +      + A T   S+ V    L SR   A V  +   D 
Sbjct: 109 VDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQPLDA 164

Query: 176 DFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM----GI 230
           D L+K+++K   +  +  I+      ++   +     A +L++ ++ LA++        I
Sbjct: 165 DSLKKIVLKAQTEYALPAIESIAIDRLIAYAD---GDARRLLNTLETLAIAARQEQAPEI 221

Query: 231 TRSLAAEVLKETQQ 244
           T +   +VL E  +
Sbjct: 222 TDAWLLKVLGERMR 235


>gi|254738944|ref|ZP_05196646.1| hypothetical protein BantWNA_27620 [Bacillus anthracis str. Western
           North America USA6153]
          Length = 267

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 24/125 (19%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104
           AV+ + ++  W    ++L G  G+GK+  A    +      +  + + +  +L       
Sbjct: 103 AVKYVKTFKXWNGESLMLWGEPGNGKTHXAAAIVNXLSKKGYXVVFQXVPELLQRIRXTX 162

Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147
                         +     ++L+DI      ++ + +LF+II+  ++ +   L T+   
Sbjct: 163 XXENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 222

Query: 148 PVSWG 152
           P    
Sbjct: 223 PKELK 227


>gi|261418417|ref|YP_003252099.1| recombination factor protein RarA [Geobacillus sp. Y412MC61]
 gi|319767623|ref|YP_004133124.1| ATPase AAA [Geobacillus sp. Y412MC52]
 gi|261374874|gb|ACX77617.1| AAA ATPase central domain protein [Geobacillus sp. Y412MC61]
 gi|317112489|gb|ADU94981.1| AAA ATPase central domain protein [Geobacillus sp. Y412MC52]
          Length = 431

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 21/148 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS---------NIAKSLDSILIDTRKPVLLED 115
             ++L G  G+GK+ LA   +  +     +          I +++++        + +++
Sbjct: 43  PSLLLYGEPGTGKTSLAYAIARTAGREWVAINATTAGKKEIEEAVEAARWSGNVLLFIDE 102

Query: 116 IDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           I  L+     +   H+     +     L+ A T      V  P + SR      +K   P
Sbjct: 103 IHRLNKAQQDVLLPHL-----ESGLVTLIGATTENPFHEVN-PAIRSRCGQIQQLKPLKP 156

Query: 174 DDDFLEKVIVKMFAD--RQIFIDKKLAA 199
           DD  L  ++ +  AD  R +     +  
Sbjct: 157 DD--LLIILKRALADPERGVGEPPVVID 182


>gi|269859412|ref|XP_002649431.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348]
 gi|220067194|gb|EED44661.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348]
          Length = 778

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 51/221 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   +++  +                   SN+ K+ +     
Sbjct: 245 PPRGILLHGPPGTGKTQIARAIANEIGAYLLIINGPEIMSKMSGESESNLRKAFEEANKK 304

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +  N              QL  +++ +++  + +++ A   P +    
Sbjct: 305 QPSIIFMDEIDSIAPNREKSTQETEKRIVSQLLTLMDGMNERSNVIVLGATNRPNAID-- 362

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER------ 207
            P L  R  +    ++I +PD+    +V+      + + +   +  Y V +         
Sbjct: 363 -PALR-RFGRFDREIEIGVPDEIGRFEVL--SIHTKNMRLADDVDLYAVAKETHGFTGSD 418

Query: 208 -----SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
                S    ++L +K+  + L R       +  EVLK+  
Sbjct: 419 IASMCSEAAIQQLREKLPYIDLDRER---IPI--EVLKDLS 454



 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 44/145 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           PS+ V+L GP G GK+ LA   + + ++   S     L S  +   +  + E  D    +
Sbjct: 518 PSKGVLLYGPPGCGKTLLAKAVATECKANFISIKGPELLSKWVGDSESNVRELFDKARGS 577

Query: 123 DT-QLF------------HIINS-----------------IHQYDSSLLMTARTFPVSWG 152
               LF            H  N                  ++Q  +  +M A   P    
Sbjct: 578 APCVLFFDEIDSVGKSRMHASNDGGTTDRMLNQILTEMDGMNQKKNVFVMGATNRPGLLD 637

Query: 153 --------------VCLPDLCSRLK 163
                         + LPDL SR+K
Sbjct: 638 SALMRPGRLDQLVYIPLPDLKSRIK 662


>gi|153213560|ref|ZP_01948850.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153824929|ref|ZP_01977596.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153828124|ref|ZP_01980791.1| ATPase, AAA family [Vibrio cholerae 623-39]
 gi|229520459|ref|ZP_04409884.1| ATPase AAA family [Vibrio cholerae TM 11079-80]
 gi|261210730|ref|ZP_05925022.1| ATPase AAA family [Vibrio sp. RC341]
 gi|124115896|gb|EAY34716.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|148876366|gb|EDL74501.1| ATPase, AAA family [Vibrio cholerae 623-39]
 gi|149741441|gb|EDM55471.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|229342557|gb|EEO07550.1| ATPase AAA family [Vibrio cholerae TM 11079-80]
 gi|260840215|gb|EEX66795.1| ATPase AAA family [Vibrio sp. RC341]
          Length = 449

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            +   + + + +  AD  R +          +   +        RM  + +     + + 
Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225

Query: 220 DNLALSRGMGITRSLAAEV 238
           D+        I   L AEV
Sbjct: 226 DD---QGRKQIDLPLLAEV 241


>gi|310789403|gb|EFQ24936.1| AAA family ATPase [Glomerella graminicola M1.001]
          Length = 819

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 256 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 315

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 316 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 375

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    V I +PD     +V+      + + +   +
Sbjct: 376 LR----RFGRFDREVDIGIPDPTGRLEVLQ--IHTKNMKLGDDV 413


>gi|294954392|ref|XP_002788145.1| werner helicase interacting protein, putative [Perkinsus marinus
           ATCC 50983]
 gi|239903360|gb|EER19941.1| werner helicase interacting protein, putative [Perkinsus marinus
           ATCC 50983]
          Length = 622

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 29/194 (14%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-------RSTRFSNIAKS 99
            A+ Q+   I   P+ PS  +I  GP G GK+ LA +            R T+ S +   
Sbjct: 154 EALSQSAATISHHPTVPS--MIFWGPPGCGKTTLAQLLCRSLTQSGLPWRHTKLSAVNAG 211

Query: 100 LDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTF 147
           ++ + ++  K   +E    +  + T LF    H  N           +  +  L+ A T 
Sbjct: 212 VNDVGLEIPKAESMEG--KVTISGTLLFLDEIHRFNKAQQDALLPHVESGTLTLIGATTE 269

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR--QIFIDKKLAAYIVQRM 205
             S+      L SR     V+K S    D + +++ +       Q+ +D+     +    
Sbjct: 270 NPSFQCNRA-LVSR---CQVIKFSSLTSDSIGRILRRALTSYYPQVAVDESTGDLLRILA 325

Query: 206 ERSLVFAEKLVDKM 219
           E  +      ++ +
Sbjct: 326 EFGMGDVRASLNAL 339


>gi|159469321|ref|XP_001692816.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii]
 gi|158278069|gb|EDP03835.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii]
          Length = 427

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 48/154 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 202 PPKGVLMYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 261

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 262 KACIVFFDEVDAIGGARFDDGAGGDNEVQRTMLEIVNQLDGFDARGNVKVLMATNRPDTL 321

Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKIS 171
            P               LPDL SR     + +I 
Sbjct: 322 DPALLRPGRLDRKVEFGLPDLASR---TQIFQIH 352


>gi|289178455|gb|ADC85701.1| ATPase, AAA family [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 520

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 28/143 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA+I + +S          ++  K L  +L    + ++         
Sbjct: 78  VILFGPPGVGKTTLAHIVAKQSGRQYEELSAVTSGVKDLREVLRRAHERLV------SQG 131

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ V  P L SR   + VVK
Sbjct: 132 KETVLFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVK 187

Query: 170 ISLPDDDFLEKVIVKMFAD-RQI 191
           +   + + L  VI +  ++ R +
Sbjct: 188 LESLEPEELRTVIERAVSNPRGL 210


>gi|237751577|ref|ZP_04582057.1| recombination factor protein RarA [Helicobacter bilis ATCC 43879]
 gi|229372943|gb|EEO23334.1| recombination factor protein RarA [Helicobacter bilis ATCC 43879]
          Length = 402

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 32/197 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++  GP GSGK+ LA+I +  S+ T  S  A +     +     +          N  
Sbjct: 44  PNLLFFGPPGSGKTSLAHIIATLSKKTFLSFNATNFKLDSLKKELSLY-----EHTMNKP 98

Query: 125 QLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSR-----LKAATVV 168
            LF    H +N   Q           +     +    +    P L SR     LKA    
Sbjct: 99  LLFIDEVHRLNIAQQEFLLPILEKGQVAFIGASTENPFFTLSPALRSRSFLFELKALQTQ 158

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD-KMDNLALSRG 227
                 +  L+    K   D        + ++++            L+D  +D   +   
Sbjct: 159 DFEELYNRVLKAYPPKHSFD-------SIKSWLLSHHNGDCRAFLNLLDIALD---IDSK 208

Query: 228 MGITRSLAAEVLKETQQ 244
             ++ S+   +++  Q 
Sbjct: 209 QEVSVSMLQSLVQNAQG 225


>gi|291278894|ref|YP_003495729.1| ATPase AAA family [Deferribacter desulfuricans SSM1]
 gi|290753596|dbj|BAI79973.1| ATPase, AAA family [Deferribacter desulfuricans SSM1]
          Length = 404

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 27/173 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSIL--------IDTRKPVLLEDI 116
           +IL+GP G GK+ +A +   +      R      S   I               + +++I
Sbjct: 40  IILIGPPGCGKTTIAKLIGKQHSMIFYRLHAANCSSSDIRKIVEETKGYGKTSIIFIDEI 99

Query: 117 DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-- 174
              + +   L  ++N I +    L+  +   P  + +  P L SR   + + +++ P   
Sbjct: 100 HHFNKSQQNL--LLNIIDEGYVKLVGASTENP-YYSLIPP-LRSR---SILFELNQPRRS 152

Query: 175 --DDFLEKV---IVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKM 219
             +   ++V   + + F    I  D  +   ++Q      R      + + K+
Sbjct: 153 DFEKLFKRVENWLKEEFEVSDIVYDDNVVDLLIQNANGDVRKFYIMMESLAKI 205


>gi|261415785|ref|YP_003249468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372241|gb|ACX74986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327080|gb|ADL26281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 417

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 30/127 (23%)

Query: 17  KNDQPKNKEEQ-------LFFSFPRCLGISRDDLLVHS-----AIEQAV-RLIDSWP--- 60
           + D  + K+EQ            P  +    DD ++       A+  AV           
Sbjct: 47  EEDLARTKQEQEAKEISSKPLPLPTEIKAHLDDFVIGQDRAKMALSVAVYNHYKRLRYKQ 106

Query: 61  --------SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
                         ++LVGP+GSGK+ LA   +      RF ++  ++    + T    +
Sbjct: 107 THKSKDDVDVEKSNLLLVGPTGSGKTLLAQTMA------RFLDVPFTIADATVLTEAGYV 160

Query: 113 LEDIDLL 119
            ED+D +
Sbjct: 161 GEDVDSI 167


>gi|183601785|ref|ZP_02963155.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683685|ref|YP_002470068.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190717|ref|YP_002968111.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196123|ref|YP_002969678.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219391|gb|EDT90032.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621335|gb|ACL29492.1| AAA ATPase, central domain protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240249109|gb|ACS46049.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250677|gb|ACS47616.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793706|gb|ADG33241.1| recombination factor protein RarA [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 504

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 28/143 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA+I + +S          ++  K L  +L    + ++         
Sbjct: 62  VILFGPPGVGKTTLAHIVAKQSGRQYEELSAVTSGVKDLREVLRRAHERLV------SQG 115

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ V  P L SR   + VVK
Sbjct: 116 KETVLFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVK 171

Query: 170 ISLPDDDFLEKVIVKMFAD-RQI 191
           +   + + L  VI +  ++ R +
Sbjct: 172 LESLEPEELRTVIERAVSNPRGL 194


>gi|134055619|emb|CAK37265.1| unnamed protein product [Aspergillus niger]
          Length = 767

 Score = 44.4 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 17/75 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--------RFSNIAKSLDSILIDTRKPV-----LL 113
           V+L GP G+GK+ LA   +++ ++T          S+IA   +  +             +
Sbjct: 517 VLLHGPPGTGKTHLARAIANEFKATMLWVKPADIVSDIAGDAEKAIHAAFTLAKKLSPCI 576

Query: 114 EDIDLLDFNDTQLFH 128
             ID +D     LFH
Sbjct: 577 LFIDEVD----ALFH 587


>gi|332796490|ref|YP_004457990.1| 26S proteasome subunit P45 family [Acidianus hospitalis W1]
 gi|332694225|gb|AEE93692.1| 26S proteasome subunit P45 family [Acidianus hospitalis W1]
          Length = 390

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   + +S +T    +A       +     V+ E  +L 
Sbjct: 166 PPKGVLLYGPPGTGKTMLAKAVATESNATFIHVVASEFAQKFVGEGARVVREVFELA 222


>gi|325179638|emb|CCA14036.1| 26S protease regulatory subunit 6AA putative [Albugo laibachii
           Nc14]
          Length = 436

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++ +      A  L  + I     ++ +
Sbjct: 209 PPKGVLLHGPPGTGKTLLARACAKQTDAVFLKIAAPLLVQMFIGDGAKLVRD 260


>gi|317013863|gb|ADU81299.1| recombination factor protein RarA [Helicobacter pylori Gambia94/24]
          Length = 391

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 21/179 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARSLECPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + + +L++ A T   ++ +    + SR   + + +++   
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKNHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLK 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
              L+++  K     Q  I+     Y++     S   A  L++ +D L+      IT  
Sbjct: 151 KSDLDRLCDKALTLLQKQIEPGAKTYLLNN---SAGDARALLNLLD-LSAKIENPITLK 205


>gi|327295304|ref|XP_003232347.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
 gi|326465519|gb|EGD90972.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
          Length = 550

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95
                 LI+         +IL G +G+GK+ LA + +    S                  
Sbjct: 162 NGVLRGLIERDR---VPSMILWGSAGTGKTTLARVIASMVGSRFVEINSTSSGVAECKKL 218

Query: 96  IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            A++ + + +  RK ++  ++I     +   +F       +     L+ A T   S+ V 
Sbjct: 219 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 275

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208
              L SR        ++   ++ +  ++ +              +D +L  Y+    +  
Sbjct: 276 NA-LLSR---CRTFTLAKLTEENICAILNRALRVEGPNYSPSALVDDELIRYLAAFADGD 331

Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235
              A  L++  MD      +++      +TR+L 
Sbjct: 332 ARTALNLLELAMDLSQRENMTKDELKKSLTRTLV 365


>gi|78183967|ref|YP_376402.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CC9902]
 gi|78168261|gb|ABB25358.1| Recombination protein MgsA [Synechococcus sp. CC9902]
          Length = 733

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I ++ +R+   +  A       +        + ++      T L
Sbjct: 58  LILHGPPGVGKTTLARIVANHTRAHFSNLNAVLAGVKDLRAEVDAAQQRLERHGLR-TIL 116

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  +  L+ A T    + V    L SR   + + ++   +
Sbjct: 117 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLLPLE 172

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
              L +++ +   D       R + +D   A ++V             ++
Sbjct: 173 PKDLHQLLQRALTDQDRGYGERSVVLDTDAANHLVDVAGGDARSLLNALE 222


>gi|302753326|ref|XP_002960087.1| hypothetical protein SELMODRAFT_74992 [Selaginella moellendorffii]
 gi|302804594|ref|XP_002984049.1| hypothetical protein SELMODRAFT_180681 [Selaginella moellendorffii]
 gi|300148401|gb|EFJ15061.1| hypothetical protein SELMODRAFT_180681 [Selaginella moellendorffii]
 gi|300171026|gb|EFJ37626.1| hypothetical protein SELMODRAFT_74992 [Selaginella moellendorffii]
          Length = 420

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 200 PPKGVLLYGPPGTGKTLMARACAAQTNATYLKLAGPQLVQMFIGDGAKLVRD 251


>gi|225352769|ref|ZP_03743792.1| hypothetical protein BIFPSEUDO_04399 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156376|gb|EEG69945.1| hypothetical protein BIFPSEUDO_04399 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 458

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 31/177 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ LA I + +S          ++  K +  +L      ++ E  + + F
Sbjct: 62  IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLRRAHDRLVAEGKETVLF 121

Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            D     +         +LL          + A T   S+ +  P L SR   + VVK+ 
Sbjct: 122 IDE----VHRFSKSQQDALLPSVENRDVTFIAATTENPSFSIIKP-LLSR---SVVVKLE 173

Query: 172 LPDDDFLEKVIVKMF-ADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             + D L+ +I +   ++R +     I+ +    IV RM  +   A K +  ++  A
Sbjct: 174 SLEPDDLKTLIKRAIESERGLKNEVKINDEAVDEIV-RM--AGGDARKTLTILEAAA 227


>gi|297201931|ref|ZP_06919328.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
 gi|197712693|gb|EDY56727.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
          Length = 1118

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 14/102 (13%)

Query: 17  KNDQPKNK--EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74
           +   P++     QL    PR          V    +  VR +D+W      ++++VGP+G
Sbjct: 259 REHSPRDTRVPHQL----PRAPR-----FFVGRGTD--VRQLDAWWRGGEDILLIVGPAG 307

Query: 75  SGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            GK+ LA  WS +  +  F +    LD    D  +P+ +E+ 
Sbjct: 308 VGKTALALHWSHQV-ARGFPDGQLFLDMRGFDDGEPMTVEEA 348


>gi|195125637|ref|XP_002007284.1| GI12851 [Drosophila mojavensis]
 gi|193918893|gb|EDW17760.1| GI12851 [Drosophila mojavensis]
          Length = 614

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 16/79 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           PSR ++L GP G GK+ LA   + + +       A  L                +  + +
Sbjct: 298 PSRGLLLHGPPGCGKTYLARAIAGQLKMPLLEVPATELIGGISGESEERIRDVFEQAIDN 357

Query: 107 TRKPVLLEDIDLLDFNDTQ 125
           +   + +++ID +  N   
Sbjct: 358 SPCVLFIDEIDAIAGNRQW 376


>gi|170698492|ref|ZP_02889563.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10]
 gi|170136576|gb|EDT04833.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10]
          Length = 436

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 23/180 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +   +
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLQSLN 164

Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRGMGIT 231
           DD + +++ +    A   +  D K    ++   +     A + ++ ++     +    IT
Sbjct: 165 DDEMRQLLKRAQEIALDGLAFDDKAVDTLIGYAD---GDARRFLNLLEQAQTAASSSRIT 221


>gi|262402531|ref|ZP_06079092.1| ATPase AAA family [Vibrio sp. RC586]
 gi|262351313|gb|EEZ00446.1| ATPase AAA family [Vibrio sp. RC586]
          Length = 449

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            +   + + + +  AD  R +          +   +        RM  + +     + + 
Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVSGDARMSLNYLELLYDMARE 225

Query: 220 DNLALSRGMGITRSLAAEV 238
           D+        I   L AEV
Sbjct: 226 DD---QGRKQIDLPLLAEV 241


>gi|237746808|ref|ZP_04577288.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS]
 gi|229378159|gb|EEO28250.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS]
          Length = 430

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 34/200 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ LA + +D   +     S +   +  I     +  L+          T
Sbjct: 43  MILWGPPGVGKTTLARLMADGFNAEFIALSAVLSGVKDIREAVERARLI---RSGSGRRT 99

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +      + A T   S+ V    L SR   A V  +  
Sbjct: 100 ILFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNNA-LLSR---AAVYVLKP 155

Query: 173 PD----DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            D    D  + + + +      + +  +    ++   +     A +L++ ++ +A +   
Sbjct: 156 LDNGNLDTLVNRALERELD--GLTVSAEARTLLLMSAD---GDARRLLNNLEIVAQAARA 210

Query: 229 G----ITRSLAAEVLKETQQ 244
                I  +L  E L +  +
Sbjct: 211 KNEEEIGVALLKETLGDAMR 230


>gi|221055976|ref|XP_002259126.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193809197|emb|CAQ39899.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 655

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 24/167 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAK--------------SLDSILIDTRKPVL 112
           +IL GP GSGKS L N+  +K+ +   S                   ++  L   R  + 
Sbjct: 227 LILCGPPGSGKSSLVNVIKNKTNNLFISLFHLNNLNNELRKIYDQSVINYKLSKKRTILC 286

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++DI+ L+ N  +   +I  + +    LL T    P    +    L SR      + ++ 
Sbjct: 287 IKDINRLNKNQQENLLLI--LKKGYFYLLATCLFNP--MNILNASLSSR---CLYLYLNA 339

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            D   L  +I ++     I I+      I+     S   A   ++ +
Sbjct: 340 YDKIELALIIKRIINKLDIDIEDNALNIIMNH---SCGDARVAINMI 383


>gi|33152375|ref|NP_873728.1| recombination factor protein RarA [Haemophilus ducreyi 35000HP]
 gi|33148598|gb|AAP96117.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 446

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 35/200 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I +    +   R S +   +  I     +       +      T
Sbjct: 52  MILWGPPGTGKTTLAEIIAQHFDAEVERLSAVTSGVKEIREAIEQA----KYNRQAGRKT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 108 LLFVDEVHRFNKSQQDAFLPYIEDGTVIFIGATTENPSFELNNA---LLSR---ARIYLL 161

Query: 171 SLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                D +E+++     D+Q         +  ++   +   +     +A   +  M ++A
Sbjct: 162 KPLQADEIEQILQNALQDKQNGLGQEHFILADEVLKLLADYVNGDARYALNCLALMADMA 221

Query: 224 LS--RGMGITRSLAAEVLKE 241
            S  +G  + ++L   VL E
Sbjct: 222 ESSPQGKVLNQALLIAVLGE 241


>gi|322795198|gb|EFZ18020.1| hypothetical protein SINV_06601 [Solenopsis invicta]
          Length = 784

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +  +T FS  A SL S  +   + ++
Sbjct: 593 PARGLLLFGPPGNGKTLLARAVATQCNATFFSISAASLTSKYVGEGEKLV 642


>gi|300709323|ref|XP_002996827.1| hypothetical protein NCER_100015 [Nosema ceranae BRL01]
 gi|239606153|gb|EEQ83156.1| hypothetical protein NCER_100015 [Nosema ceranae BRL01]
          Length = 408

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 43/142 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P + V+L GP G+GK+ LA   ++++ +     I   L                 +  TR
Sbjct: 185 PPKGVLLYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVREIFEMAKTR 244

Query: 109 KPVLL--EDIDLLDFN----------DTQLFHIINSIH----QYDSSLLMTARTF----P 148
           +  ++  +++D                  +  +IN +     + +  +LM         P
Sbjct: 245 RACIIFFDEVDAFGGTRFEDSGENEVQRTMLELINQLDGFDSRGNIKVLMATNRPDTLDP 304

Query: 149 VSW---------GVCLPDLCSR 161
                          LPDL  R
Sbjct: 305 ALLRPGRLDRKVEFSLPDLEGR 326


>gi|221122395|ref|XP_002164973.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 428

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +          ++ A       
Sbjct: 268 LPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTSQIKVIAATNRVDIL 327

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++   P ++   +++      R++ +  ++    + R      
Sbjct: 328 DPAL--LRSGRLD--RKIEFPNPTEEARARILQ--IHSRKMNVSPEVNFEELARCTDDFN 381

Query: 211 FAE 213
            A+
Sbjct: 382 GAQ 384


>gi|160936160|ref|ZP_02083533.1| hypothetical protein CLOBOL_01056 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440970|gb|EDP18694.1| hypothetical protein CLOBOL_01056 [Clostridium bolteae ATCC
           BAA-613]
          Length = 625

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 54/205 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 213 ALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANDKAPCI 272

Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++        +++ A   P S     
Sbjct: 273 VFIDEIDTIGKKRDGGGMSGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDKAL 332

Query: 152 ----------GVCLPDLCSRLKAATVVK---ISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
                      V LPDL  R +A   V    + + DD     +           +   + 
Sbjct: 333 LRPGRFDRRVPVELPDLKGR-EAILKVHGQNVKMSDDVDYNAIARATAGASGAELANIIN 391

Query: 199 AYIVQ--RMERSL---VFAEKLVDK 218
              ++  RM RS       E+ V+ 
Sbjct: 392 EAALRAVRMGRSAVVQADLEESVET 416


>gi|145349496|ref|XP_001419168.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579399|gb|ABO97461.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 560

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G GK+ LA   + ++ +T FS  A     + +      + +
Sbjct: 99  VLLTGPPGCGKTLLARAVAGEAGATFFSLAASEFVEMFVGVGAARVRD 146


>gi|116071416|ref|ZP_01468685.1| ATPase [Synechococcus sp. BL107]
 gi|116066821|gb|EAU72578.1| ATPase [Synechococcus sp. BL107]
          Length = 726

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I ++ +R+   +  A       +        + ++      T L
Sbjct: 58  LILHGPPGVGKTTLARIVANHTRAHFSNLNAVLAGVKDLRAEVDAAQQRLERHGLR-TIL 116

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  +  L+ A T    + V    L SR   + + ++   +
Sbjct: 117 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLLPLE 172

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
              L +++ +   D       R + +D   A ++V             ++
Sbjct: 173 PKDLHQLLQRALTDQERGYGERSVVLDTDAANHLVDVAGGDARSLLNALE 222


>gi|15641121|ref|NP_230753.1| recombination factor protein RarA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591286|ref|ZP_01678581.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153816923|ref|ZP_01969590.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153823890|ref|ZP_01976557.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227081281|ref|YP_002809832.1| hypothetical protein VCM66_1064 [Vibrio cholerae M66-2]
 gi|229505296|ref|ZP_04394806.1| ATPase AAA family [Vibrio cholerae BX 330286]
 gi|229511034|ref|ZP_04400513.1| ATPase AAA family [Vibrio cholerae B33]
 gi|229518155|ref|ZP_04407599.1| ATPase AAA family [Vibrio cholerae RC9]
 gi|229608315|ref|YP_002878963.1| recombination factor protein RarA [Vibrio cholerae MJ-1236]
 gi|254848238|ref|ZP_05237588.1| recombination factor protein RarA [Vibrio cholerae MO10]
 gi|255745521|ref|ZP_05419469.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101]
 gi|262158405|ref|ZP_06029521.1| holliday junction DNA helicase RuvB [Vibrio cholerae INDRE 91/1]
 gi|298498787|ref|ZP_07008594.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655578|gb|AAF94267.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546870|gb|EAX57028.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126512510|gb|EAZ75104.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126518593|gb|EAZ75816.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227009169|gb|ACP05381.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229344870|gb|EEO09844.1| ATPase AAA family [Vibrio cholerae RC9]
 gi|229350999|gb|EEO15940.1| ATPase AAA family [Vibrio cholerae B33]
 gi|229357519|gb|EEO22436.1| ATPase AAA family [Vibrio cholerae BX 330286]
 gi|229370970|gb|ACQ61393.1| ATPase AAA family [Vibrio cholerae MJ-1236]
 gi|254843943|gb|EET22357.1| recombination factor protein RarA [Vibrio cholerae MO10]
 gi|255736596|gb|EET91993.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101]
 gi|262029846|gb|EEY48494.1| holliday junction DNA helicase RuvB [Vibrio cholerae INDRE 91/1]
 gi|297543120|gb|EFH79170.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 449

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            +   + + + +  AD  R +          +   +        RM  + +     + + 
Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225

Query: 220 DNLALSRGMGITRSLAAEV 238
           D+        I   L AEV
Sbjct: 226 DD---QGRKQIDLPLLAEV 241


>gi|296243008|ref|YP_003650495.1| proteasome-activating nucleotidase [Thermosphaera aggregans DSM
           11486]
 gi|296095592|gb|ADG91543.1| Proteasome-activating nucleotidase [Thermosphaera aggregans DSM
           11486]
          Length = 404

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ LA   + ++ +T  S +   L    I     ++ E
Sbjct: 168 PPKGVLLYGPPGCGKTMLAKAVASEAGATFISIVGSELVQKFIGEGARIVRE 219


>gi|295091290|emb|CBK77397.1| phage DNA replication protein (predicted replicative helicase
           loader) [Clostridium cf. saccharolyticum K10]
          Length = 280

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 35/141 (24%)

Query: 50  EQAVRLIDSWPS-WPSRVVIL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96
             A R ++ W       +  L  G  G+GKS LA   ++              +   +++
Sbjct: 111 GIARRYVEHWEDMRTDNIGCLFWGGVGTGKSYLAGCIANALMEKEIPVRMTNFALILNDL 170

Query: 97  AKSLDSI-----LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           A S +        +     ++L+D  +    +    Q+F++I+S ++    L++T     
Sbjct: 171 AASFEGRNEYISRLCRYPLLILDDFGMERGTEYGLEQVFNVIDSRYRSGKPLIVTT---- 226

Query: 149 VSWGVCLPDLC-------SRL 162
               + L DL        SR+
Sbjct: 227 ---NLTLDDLRNPEDTAHSRI 244


>gi|255637103|gb|ACU18883.1| unknown [Glycine max]
          Length = 423

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++          
Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 262

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 +++ID +                  +  ++N +      D   ++ A       
Sbjct: 263 SPCTIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  + S RL     ++   P ++   +++      R++ +   +    + R      
Sbjct: 323 DPAL--MRSGRLD--RKIEFPHPSEEARARILQ--IHSRKMNVHPDVNFEELARSTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   L+     T
Sbjct: 377 GAQLKAVCVEAGMLALRRDAT 397


>gi|229525720|ref|ZP_04415125.1| ATPase AAA family [Vibrio cholerae bv. albensis VL426]
 gi|229339301|gb|EEO04318.1| ATPase AAA family [Vibrio cholerae bv. albensis VL426]
          Length = 449

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            +   + + + +  AD  R +          +   +        RM  + +     + + 
Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225

Query: 220 DNLALSRGMGITRSLAAEV 238
           D+        I   L AEV
Sbjct: 226 DD---QGRKQIDLPLLAEV 241


>gi|237809054|ref|YP_002893494.1| recombination factor protein RarA [Tolumonas auensis DSM 9187]
 gi|237501315|gb|ACQ93908.1| AAA ATPase central domain protein [Tolumonas auensis DSM 9187]
          Length = 448

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 81/195 (41%), Gaps = 32/195 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA + +   ++                + I ++ D+     R  + +
Sbjct: 52  MILWGPPGTGKTTLAELMARYCQADVERISAVTSGVKEIRAAIDRAKDNSYRARRTLLFV 111

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 112 DEVHRFNKSQQDAFLPHI-----EDGTIIFVGATTENPSFELNNA-LLSR---ARVYLLK 162

Query: 172 LPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              D+ + +V+ +   D       Q+  D+ +   +VQ ++     A   ++ ++++A S
Sbjct: 163 RLTDEEIYQVVQQALTDPRGLASEQLQFDEGVLKALVQLVDGDARKALNYLELLNDMADS 222

Query: 226 RG--MGITRSLAAEV 238
           +     I R L A V
Sbjct: 223 QSGIKHIDRHLLAAV 237


>gi|150951374|ref|XP_001387688.2| 26S proteasome regulatory subunit [Scheffersomyces stipitis CBS
           6054]
 gi|149388540|gb|EAZ63665.2| 26S proteasome regulatory subunit [Pichia stipitis CBS 6054]
          Length = 427

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 40/178 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++          
Sbjct: 206 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 265

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N        D   ++ A     + 
Sbjct: 266 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFDSDDRVKVLAATNRVDTL 325

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L  L S RL     ++  LP ++  E V+      R++  D     +  + + RS
Sbjct: 326 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLNCDNNSVNW--RELARS 375


>gi|145594367|ref|YP_001158664.1| recombination factor protein RarA [Salinispora tropica CNB-440]
 gi|145303704|gb|ABP54286.1| Recombination protein MgsA [Salinispora tropica CNB-440]
          Length = 477

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND 123
           VIL GP GSGK+ +A++ +  +     +  A +     +      +++            
Sbjct: 50  VILWGPPGSGKTTIAHLVAGATDRRFVAMSALNAGVKDVRA----VIDAARRQRRAGGPQ 105

Query: 124 TQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  +        +  +  +  L+ A T    + V  P L SR     ++ + 
Sbjct: 106 TVLFIDEVHRFSKTQQDSLLAAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 161

Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203
             DDD +  ++ +   D R +     +  +   ++V+
Sbjct: 162 PLDDDAVRSLLRRAVVDGRGLGGTPVLAPEAEEHLVR 198


>gi|153802127|ref|ZP_01956713.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124122320|gb|EAY41063.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 449

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            +   + + + +  AD  R +          +   +        RM  + +     + + 
Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225

Query: 220 DNLALSRGMGITRSLAAEV 238
           D+        I   L AEV
Sbjct: 226 DD---QGRKQIDLPLLAEV 241


>gi|119719222|ref|YP_919717.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk
           5]
 gi|119524342|gb|ABL77714.1| AAA family ATPase, CDC48 subfamily [Thermofilum pendens Hrk 5]
          Length = 732

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 76/201 (37%), Gaps = 49/201 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + ++L GP G+GK+ LA   ++++ +   +               + L  I  + ++ 
Sbjct: 216 PPKGILLYGPPGTGKTLLAKAVANETDAYFIAINGPEIMSKFYGESEQRLREIFEEAKEH 275

Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 276 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLALMDGLEARGDVIVIGATNRPNALDPA 335

Query: 152 -----------GVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       + +PD   RL+   + K+        + V + K+      F+   +AA
Sbjct: 336 LRRPGRFDREIEIGIPDKRGRLE---IFKVHTRSMPLAKDVDLEKLAEITHGFVGADIAA 392

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
             + R E ++    +++ K+D
Sbjct: 393 --LCR-EAAMKALRRVLPKID 410



 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   S
Sbjct: 489 PPKGILLYGPPGTGKTLLAKAVATESEANFVS 520


>gi|15920392|ref|NP_376061.1| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7]
 gi|15621174|dbj|BAB65170.1| 689aa long hypothetical SAV protein [Sulfolobus tokodaii str. 7]
          Length = 689

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + ++L GP G GK+ LA   ++++ +              +    + L  I  D +K 
Sbjct: 145 PPKGILLYGPPGVGKTLLAKAVANETEAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 204

Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFP------ 148
               + +++ID +    ++           QL  +++ +    + +++ A   P      
Sbjct: 205 APAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLESRGNVIVIAATNRPNAVDPA 264

Query: 149 --------VSWGVCLPDLCSRL 162
                       + LPD   RL
Sbjct: 265 LRRPGRFDREIEIPLPDKQGRL 286



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 418 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 449


>gi|16519670|ref|NP_443790.1| putative transposase number 2 of insertion sequence NGRIS-3c
           [Sinorhizobium fredii NGR234]
 gi|16519818|ref|NP_443938.1| putative transposase number 2 of insertion sequence NGRIS-3b
           [Sinorhizobium fredii NGR234]
 gi|16519948|ref|NP_444068.1| putative transposase number 2 of insertion sequence NGRIS-3a
           [Sinorhizobium fredii NGR234]
 gi|227818346|ref|YP_002822317.1| transposase number 2 for insertion sequence NGRIS-3d [Sinorhizobium
           fredii NGR234]
 gi|227819172|ref|YP_002823143.1| transposase number 2 for insertion sequence NGRIS-3e [Sinorhizobium
           fredii NGR234]
 gi|227819723|ref|YP_002823694.1| transposase number 2 for insertion sequence NGRIS-3f [Sinorhizobium
           fredii NGR234]
 gi|2497396|sp|P55380|Y4BM_RHISN RecName: Full=Putative insertion sequence ATP-binding protein
           y4bM/y4kI/y4tA
 gi|11352866|pir||T47074 hypothetical protein Y4kI [imported] - Rhizobium sp.  (NGR234)
           plasmid pNGR234a
 gi|2182321|gb|AAB91628.1| putative transposase number 2 of insertion sequence NGRIS-3c
           [Sinorhizobium fredii NGR234]
 gi|2182485|gb|AAB91740.1| putative transposase number 2 of insertion sequence NGRIS-3b
           [Sinorhizobium fredii NGR234]
 gi|2182631|gb|AAB91855.1| putative transposase number 2 of insertion sequence NGRIS-3a
           [Sinorhizobium fredii NGR234]
 gi|227337345|gb|ACP21564.1| putative transposase number 2 for insertion sequence NGRIS-3d
           [Sinorhizobium fredii NGR234]
 gi|227338171|gb|ACP22390.1| putative transposase number 2 for insertion sequence NGRIS-3e
           [Sinorhizobium fredii NGR234]
 gi|227338722|gb|ACP22941.1| putative transposase number 2 for insertion sequence NGRIS-3f
           [Sinorhizobium fredii NGR234]
          Length = 263

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 20/111 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------TRFSNIAKSLDSILIDTRKP--------- 110
           +I+ G +G+GKS LA  +  ++          R   + + L    +D   P         
Sbjct: 108 LIITGHTGTGKSWLACAFGRQAARLGHSVLYVRVPRMFEELALARLDGSFPRLIDRLTRV 167

Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQ--YDSSLLMTARTFPVSWGVCLPD 157
             ++L+D      +D Q FH+   + +     S L+TA+    SW   + D
Sbjct: 168 QLLILDDFGTHTLSDQQRFHLFEIVEERYQRKSTLITAQVPVASWHDLIAD 218


>gi|297578710|ref|ZP_06940638.1| ATPase [Vibrio cholerae RC385]
 gi|297536304|gb|EFH75137.1| ATPase [Vibrio cholerae RC385]
          Length = 449

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            +   + + + +  AD  R +          +   +        RM  + +     + + 
Sbjct: 166 LNQQEILQALHQAIADSERGLGKVAAVFADNVLDRLAELVSGDARMSLNYLELLYDMARE 225

Query: 220 DNLALSRGMGITRSLAAEV 238
           D+        I   L AEV
Sbjct: 226 DD---QGRKQIDLPLLAEV 241


>gi|291515550|emb|CBK64760.1| Recombination protein MgsA [Alistipes shahii WAL 8301]
          Length = 425

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 26/147 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLED-IDL 118
              IL GP G GK+ LA I + +     F+  A +     +  ++   RK    +    L
Sbjct: 41  PSFILWGPPGVGKTTLAKIVATQLERPFFTLSAVTSGVKDVREVIESARKQRFFDQKAPL 100

Query: 119 LDFNDTQLFHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           L  ++    H  N           +     L+ A T   S+ V  P L SR     V  +
Sbjct: 101 LFIDEI---HRFNKSQQDSLLGAVEQGVFTLIGATTENPSFEVISP-LLSR---CQVYIL 153

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKL 197
              +D  L+ ++     DR +  D +L
Sbjct: 154 KSLEDKDLQTLL-----DRALTTDTEL 175


>gi|218262943|ref|ZP_03477241.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223042|gb|EEC95692.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii
           DSM 18315]
          Length = 424

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 30/163 (18%)

Query: 41  DDLL-----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS----- 90
           DD +     V        ++ID+         IL GP G GK+ LA I S+K  +     
Sbjct: 16  DDYIGQKHLVGPG-AVLRKMIDA---GRVPSFILWGPPGVGKTTLAQIISNKLEAPFYTL 71

Query: 91  TRFSNIAKSLDSILIDTRK---------PVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
           +  S+  K +  ++   +           + +++I     +      ++N++ +     L
Sbjct: 72  SAISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQD--SLLNAV-ETGVVTL 128

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + A T   S+ V  P L SR     V  +   +   L  ++ K
Sbjct: 129 IGATTENPSFEVIRP-LLSR---CQVYVLKSLEKADLLTLLNK 167


>gi|322699632|gb|EFY91392.1| cell division control protein Cdc48 [Metarhizium acridum CQMa 102]
          Length = 818

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 252 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 371

Query: 155 L 155
           L
Sbjct: 372 L 372


>gi|312131534|ref|YP_003998874.1| holliday junction DNA helicase ruvb [Leadbetterella byssophila DSM
           17132]
 gi|311908080|gb|ADQ18521.1| Holliday junction DNA helicase RuvB [Leadbetterella byssophila DSM
           17132]
          Length = 339

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 27/201 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L++I +++  +         LD           LE  D+L  ++   
Sbjct: 57  VLLHGPPGLGKTTLSHIIANELGANLKITSGPVLDKPSDLAGLLTSLEQNDVLFIDEI-- 114

Query: 127 FHIINSIHQY---------DSSLLMTARTFPVSWGVCLPD------------LCSRLKA- 164
            H +N I +             +++ +     S  + L              L S L+A 
Sbjct: 115 -HRLNPIVEEYLYSAMEDYKIDIMLDSGPNARSVQIGLNPFTLIGATTRSGLLTSPLRAR 173

Query: 165 -ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                ++   D   L K++V+  +  Q  ID+  A  I +R   +   A  L+ +  + A
Sbjct: 174 FGINSRLEYYDAQLLSKILVRSASILQTPIDEDGAYEIARRSRGTPRIANNLLRRTRDFA 233

Query: 224 LSRGMG-ITRSLAAEVLKETQ 243
             +G G IT  +A   L    
Sbjct: 234 QVKGEGVITVEIAKMALAALD 254


>gi|304313998|ref|YP_003849145.1| cell division protein 48 [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587457|gb|ADL57832.1| predicted cell division protein 48 [Methanothermobacter
           marburgensis str. Marburg]
          Length = 729

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P + V++ GP G+GK+ LA   +++S +   +     + S  +   +             
Sbjct: 235 PPKGVLMHGPPGTGKTLLAKAVANESDAHFIAINGPEIMSKYVGGSEERLREFFEEAEEN 294

Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 295 APSIIFIDEIDAIAPKREDVSGEVERRIVAQLLTLMDGLKSRGQVVVIGATNRPDALD-- 352

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD +  ++++      R + + + +
Sbjct: 353 -PALRRPGRFDREIEIGVPDREERKEILQ--IHTRGMPLAEDV 392


>gi|302537728|ref|ZP_07290070.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302446623|gb|EFL18439.1| conserved hypothetical protein [Streptomyces sp. C]
          Length = 218

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 24/135 (17%)

Query: 64  SRVVILVGPSGSGKSC--------LANI-----WSDKSRSTRFS------NIAKSLDSIL 104
              +++VGP+G+GK+         L        W   + +  ++       +    +   
Sbjct: 75  GPSLLIVGPTGTGKTHQAYGAVRSLLAAGVRLRWEAVTAADLYARLRPRPGLDAERELHT 134

Query: 105 IDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCS 160
           +     ++L+D+      ++ +   + +IN  ++Y    L+T           L D + S
Sbjct: 135 LARCPLLVLDDLGAAKGSEWTEELTYRLINYRYEYLRPTLLTTNLPIPKLRTALGDRVAS 194

Query: 161 RLKAATV-VKISLPD 174
           RL   T  V +  PD
Sbjct: 195 RLSEMTHRVILDGPD 209


>gi|227822776|ref|YP_002826748.1| putative transposase number 2 for insertion sequence NGRIS-3g
           [Sinorhizobium fredii NGR234]
 gi|227341777|gb|ACP25995.1| putative transposase number 2 for insertion sequence NGRIS-3g
           [Sinorhizobium fredii NGR234]
          Length = 258

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 20/111 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------TRFSNIAKSLDSILIDTRKP--------- 110
           +I+ G +G+GKS LA  +  ++          R   + + L    +D   P         
Sbjct: 103 LIITGHTGTGKSWLACAFGRQAARLGHSVLYVRVPRMFEELALARLDGSFPRLIDRLTRV 162

Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQ--YDSSLLMTARTFPVSWGVCLPD 157
             ++L+D      +D Q FH+   + +     S L+TA+    SW   + D
Sbjct: 163 QLLILDDFGTHTLSDQQRFHLFEIVEERYQRKSTLITAQVPVASWHDLIAD 213


>gi|139436961|ref|ZP_01771121.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC
           25986]
 gi|133776608|gb|EBA40428.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC
           25986]
          Length = 635

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 55/184 (29%)

Query: 47  SAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
            ++++ V  ++    +        R  +LVGP G+GK+ LA   + ++    FS      
Sbjct: 197 ESLKEVVDFLEKPQRYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEF 256

Query: 101 DSILIDTRKP----------------VLLEDIDLLD---------FNDT------QLFHI 129
             + +                     V +++ID +           ND       QL   
Sbjct: 257 VEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEIDTIGKKRDGGGFSGNDEREQTLNQLLTE 316

Query: 130 INSIHQYDSSLLMTARTFPVSW--------------GVCLPDLCSRLK----AATVVKIS 171
           ++    +   +++ A   P S                V LPDL  R       A  VK  
Sbjct: 317 MDGFDNHKGIVVLAATNRPDSLDPALLRPGRFDRRIPVELPDLTGRKNILELHAKSVKTQ 376

Query: 172 LPDD 175
            P D
Sbjct: 377 PPID 380


>gi|5669047|gb|AAD46145.1| 19S proteasome regulatory complex subunit S6A [Arabidopsis
           thaliana]
          Length = 424

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 66/201 (32%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++          
Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 263

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 +++ID +                  +  ++N +      +   ++ A       
Sbjct: 264 APCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADIL 323

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  + S RL     ++   P ++   +++      R++ +   +    + R      
Sbjct: 324 DPAL--MRSGRLD--RKIEFPHPTEEARARILQ--IHSRKMNVHPDVHFEELARSTDDFH 377

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   L+     T
Sbjct: 378 GAQLKAVCVEAGMLALRRDAT 398


>gi|148227348|ref|NP_001080249.1| 26S protease regulatory subunit 6A-A [Xenopus laevis]
 gi|3122634|sp|O42587|PR6AA_XENLA RecName: Full=26S protease regulatory subunit 6A-A; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT5-A; AltName:
           Full=Proteasome 26S subunit ATPase 3-A; AltName:
           Full=Tat-binding protein 6; Short=TBP-6
 gi|2648047|emb|CAA71487.1| TBP6 protein [Xenopus laevis]
          Length = 405

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 65/176 (36%), Gaps = 38/176 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q +  + ++ A       
Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
              L  L S RL     ++  +P+++   +++      R++ +   +    + R  
Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCP 372


>gi|320156735|ref|YP_004189114.1| ATPase AAA family [Vibrio vulnificus MO6-24/O]
 gi|319932047|gb|ADV86911.1| ATPase AAA family [Vibrio vulnificus MO6-24/O]
          Length = 449

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 34/197 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-----------SLVFAEKLVDKMDN 221
            + + +   + +   D+Q  +    A +    ++R           SL + E L D  ++
Sbjct: 166 LNKEEISLALNQAINDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAED 225

Query: 222 LALSRGMGITRSLAAEV 238
            A      IT  L AEV
Sbjct: 226 NA-QGEKAITLKLLAEV 241


>gi|260577150|ref|ZP_05845127.1| AAA ATPase central domain protein [Rhodobacter sp. SW2]
 gi|259020624|gb|EEW23943.1| AAA ATPase central domain protein [Rhodobacter sp. SW2]
          Length = 436

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 31/199 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ +A + + +S     + S I   +  +     +      I   +   T
Sbjct: 56  LIFWGPPGVGKTTIARLLAHESDMAFVQISAIFTGVQDLRKVFEQA----RIRRANGQGT 111

Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q          ++L+   T              L SR   A V+ +
Sbjct: 112 LLFVDEIHRFNKAQQDGFLPYMEDGTILLVGATTENPSFELNAA---LMSR---AQVIVL 165

Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
                D LE++  +   D  R + +  +    +++  +     A  L++++   A     
Sbjct: 166 ERLSLDDLERLAQRAEQDMGRALPLKAEAREALLEMADGDGRAALNLIEQV--AAWKLDK 223

Query: 229 GITR-SLAAEVLKETQQCD 246
            + R +L+  +++   + D
Sbjct: 224 PLDRETLSKRLMRRAAKYD 242


>gi|256832617|ref|YP_003161344.1| AFG1-family ATPase [Jonesia denitrificans DSM 20603]
 gi|256686148|gb|ACV09041.1| AFG1-family ATPase [Jonesia denitrificans DSM 20603]
          Length = 352

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP 110
           P   + L G  G GK+ L    +                +     +  +     + T+  
Sbjct: 80  PPPALYLDGGFGVGKTHLLAALAHHVGPHATAFGTFVEYTNLVGALGFANTVTQLATKTL 139

Query: 111 VLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
           + +++ +L D  DT L   ++  +  +  +L  T+ T P S G
Sbjct: 140 ICIDEFELDDPGDTVLMSRLLRELADHGVALAATSNTLPESLG 182


>gi|224123612|ref|XP_002330164.1| predicted protein [Populus trichocarpa]
 gi|222871620|gb|EEF08751.1| predicted protein [Populus trichocarpa]
          Length = 423

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 203 PPKGILLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 254


>gi|242021491|ref|XP_002431178.1| proteasome-activating nucleotidase, putative [Pediculus humanus
           corporis]
 gi|212516427|gb|EEB18440.1| proteasome-activating nucleotidase, putative [Pediculus humanus
           corporis]
          Length = 581

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PSR ++L GP G+GK+ LA   + +  +T FS  A SL S  +   + ++
Sbjct: 339 PSRGLLLFGPPGNGKTLLARAVASECNATFFSISAASLTSKYVGEGEKLV 388


>gi|161501800|ref|NP_761751.2| recombination factor protein RarA [Vibrio vulnificus CMCP6]
 gi|319999484|gb|AAO11278.2| ATPase, AAA family [Vibrio vulnificus CMCP6]
          Length = 449

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 34/197 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-----------SLVFAEKLVDKMDN 221
            + + +   + +   D+Q  +    A +    ++R           SL + E L D  ++
Sbjct: 166 LNKEEISLALNQAINDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAED 225

Query: 222 LALSRGMGITRSLAAEV 238
            A      IT  L AEV
Sbjct: 226 NA-QGEKEITLKLLAEV 241


>gi|154495040|ref|ZP_02034045.1| hypothetical protein PARMER_04086 [Parabacteroides merdae ATCC
           43184]
 gi|154085590|gb|EDN84635.1| hypothetical protein PARMER_04086 [Parabacteroides merdae ATCC
           43184]
          Length = 426

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 30/163 (18%)

Query: 41  DDLL-----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS----- 90
           DD +     V        ++ID+         IL GP G GK+ LA I S+K  +     
Sbjct: 16  DDYIGQKHLVGPG-AVLRKMIDA---GRVPSFILWGPPGVGKTTLAQIISNKLEAPFYTL 71

Query: 91  TRFSNIAKSLDSILIDTRK---------PVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
           +  S+  K +  ++   +           + +++I     +      ++N++ +     L
Sbjct: 72  SAISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQD--SLLNAV-ETGVVTL 128

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           + A T   S+ V  P L SR     V  +   +   L  ++ K
Sbjct: 129 IGATTENPSFEVIRP-LLSR---CQVYVLKSLEKADLLTLLNK 167


>gi|308799295|ref|XP_003074428.1| putative transitional endoplasmic reticulum ATPase (ISS)
           [Ostreococcus tauri]
 gi|116000599|emb|CAL50279.1| putative transitional endoplasmic reticulum ATPase (ISS)
           [Ostreococcus tauri]
          Length = 1228

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 277 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 336

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 337 APAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGMKSRSHIIVMGATNRPNSIDPA 396

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+    +V+      + + +D+ +
Sbjct: 397 LR----RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLDEAV 434



 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 550 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 606


>gi|316968151|gb|EFV52477.1| 26S protease regulatory subunit 6B [Trichinella spiralis]
          Length = 341

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G GK+ LA   + ++ +     +        +     +++   +  D  
Sbjct: 181 PPQGVLLYGPPGCGKTMLAKAVASQTTAAFIRVVGSEFVQKYLGEGPRMVIMATNRADTL 240

Query: 123 DTQLFHI--------INSIHQYDSSLL---MTARTFPVSWGVCLPDLCSR 161
           D  L                +    L+   +T++       V L DL SR
Sbjct: 241 DPALLRPGRLDRKIEFPLPDRRQKRLVFNTITSKMNLHE-DVELEDLISR 289


>gi|259502469|ref|ZP_05745371.1| replication-associated recombination protein A [Lactobacillus antri
           DSM 16041]
 gi|259169612|gb|EEW54107.1| replication-associated recombination protein A [Lactobacillus antri
           DSM 16041]
          Length = 442

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 37/202 (18%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP- 110
            LI++        +I  GP G GK+ LA I + ++++    FS +  S+  I    ++  
Sbjct: 44  ELIENDQ---LSSLIFWGPPGVGKTTLAEIIAQQTKAHFVTFSAVTSSIKDIRKIMQEAE 100

Query: 111 ----------VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                       +++I   +      F       +  S +L+ A T   S+ +    L S
Sbjct: 101 QNREYGERTICFIDEIHRFNKAQQDAFLPF---VERGSIILIGATTENPSFEINSA-LLS 156

Query: 161 R-----LKAATVVKISLPDDDFLEKVIVKMFADRQIFID--KKLAAYIVQRMERSLVFAE 213
           R     LKA T   +    ++ +++ +    A  ++ +D        I Q        A 
Sbjct: 157 RCKVFVLKALTTADL----EEVIKRALNHPAAFPELEVDCQPDAIHLIAQFAN---GDAR 209

Query: 214 KLVDKMDNLALSRGM---GITR 232
             ++ ++   L+       +T 
Sbjct: 210 VALNTLEMAVLNGQRDGKKVTI 231


>gi|221055153|ref|XP_002258715.1| 26S proteasome regulatory subunit 4 [Plasmodium knowlesi strain H]
 gi|193808785|emb|CAQ39487.1| 26S proteasome regulatory subunit 4, putative [Plasmodium knowlesi
           strain H]
          Length = 447

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 45/206 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 225 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDH 284

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146
                 +++ID +                  +  ++N +     + D  ++M        
Sbjct: 285 APSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSL 344

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          +++  PD     ++     +   +  D  L  +++ + E
Sbjct: 345 DPALIRPGRIDRK--------IQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 396

Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231
            S    + +  +   LAL      IT
Sbjct: 397 LSGADIKAICTEAGLLALRERRMKIT 422


>gi|167535575|ref|XP_001749461.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772089|gb|EDQ85746.1| predicted protein [Monosiga brevicollis MX1]
          Length = 801

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 75/202 (37%), Gaps = 54/202 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 232 PPRGILLYGPPGTGKTMIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 291

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + Q    ++M A   P      
Sbjct: 292 SPAIIFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGLKQRAHVIVMGATNRPNSIDPA 351

Query: 149 --------VSWGVCLPDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
                       + +PD   RL+        + L DD  L     K+  +   ++   LA
Sbjct: 352 LRRFGRFDRELDIGIPDATGRLEILRIHTKNMKLADDVDL----EKIANETHGYVGADLA 407

Query: 199 AYIVQRMERSLVFAEKLVDKMD 220
           A        S    +++ ++MD
Sbjct: 408 ALC------SEAALQQIRERMD 423



 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 505 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 561


>gi|149918222|ref|ZP_01906714.1| AAA ATPase [Plesiocystis pacifica SIR-1]
 gi|149820982|gb|EDM80389.1| AAA ATPase [Plesiocystis pacifica SIR-1]
          Length = 513

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 33/208 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--LLEDIDLLDFN 122
             +I  GP G+GK+ LA I + ++ +    +   + D+ + D RK V    E  D     
Sbjct: 57  PSMIFWGPPGTGKTTLARIIASRTGAHF--DTLSATDAGVKDLRKAVERARERRD-YQGR 113

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +     L+ A T   S+ V    L SR +   +  +
Sbjct: 114 ATLLFVDEIHRFNKAQQDALLPHVEAGVCTLIGATTENPSFEVNAA-LLSRARVVQLRAL 172

Query: 171 SLPD--DDFLEKVI--VKMFADRQIFIDKKLAAYIVQ----RMERSLVFAEKLVDKMDNL 222
            +P   D     +    +    RQ+    +L   I         R+L   E  VD + + 
Sbjct: 173 GIPQLVDILRAALEHDERGLGRRQVQASDRLLGAIALASQGDARRALNSLELAVDLVPDA 232

Query: 223 ALSRG-------MGITRSLAAEVLKETQ 243
               G         ++  L AE L ++ 
Sbjct: 233 DPDAGEGEEGTARELSPELVAEALGQSH 260


>gi|156096715|ref|XP_001614391.1| 26S proteasome regulatory subunit 4 [Plasmodium vivax SaI-1]
 gi|148803265|gb|EDL44664.1| 26S proteasome regulatory subunit 4, putative [Plasmodium vivax]
          Length = 447

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 45/206 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 225 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDH 284

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146
                 +++ID +                  +  ++N +     + D  ++M        
Sbjct: 285 APSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSL 344

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          +++  PD     ++     +   +  D  L  +++ + E
Sbjct: 345 DPALIRPGRIDRK--------IQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 396

Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231
            S    + +  +   LAL      IT
Sbjct: 397 LSGADIKAICTEAGLLALRERRMKIT 422


>gi|66816709|ref|XP_642364.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|60470410|gb|EAL68390.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 886

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P + ++L GP G+GK+ LA I + ++ +T F
Sbjct: 345 PPKGILLYGPPGTGKTLLARIVATQTNATLF 375


>gi|82704989|ref|XP_726782.1| 26S proteasome subunit 4 protein [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23482335|gb|EAA18347.1| 26S proteasome subunit 4-like protein [Plasmodium yoelii yoelii]
          Length = 447

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 45/206 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 225 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDH 284

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146
                 +++ID +                  +  ++N +     + D  ++M        
Sbjct: 285 APSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSL 344

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          +++  PD     ++     +   +  D  L  +++ + E
Sbjct: 345 DPALIRPGRIDRK--------IQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 396

Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231
            S    + +  +   LAL      IT
Sbjct: 397 LSGADIKAICTEAGLLALRERRMKIT 422


>gi|329120562|ref|ZP_08249225.1| replication-associated recombination protein A [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327460786|gb|EGF07120.1| replication-associated recombination protein A [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 456

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 23/153 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 69  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRGTIL 126

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 127 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 181

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             D L  +  K+ A    R   I++     +V 
Sbjct: 182 SADDLNALTGKVLALPEYRNFAIEQDARELLVN 214


>gi|290981028|ref|XP_002673233.1| predicted protein [Naegleria gruberi]
 gi|284086815|gb|EFC40489.1| predicted protein [Naegleria gruberi]
          Length = 445

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++++ +T    I   L    +     ++ E
Sbjct: 217 PPKGVLLYGPPGTGKTLLARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 268


>gi|119945376|ref|YP_943056.1| recombination factor protein RarA [Psychromonas ingrahamii 37]
 gi|119863980|gb|ABM03457.1| Recombination protein MgsA [Psychromonas ingrahamii 37]
          Length = 442

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 78/212 (36%), Gaps = 34/212 (16%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLE 114
           ++  +  +  +IL GP G+GK+ LA + +    +   R S +   +  I    R  + + 
Sbjct: 41  NALENGAAHSMILWGPPGTGKTTLAELIASYCDAHVERLSAVTSGIKEI----RAAIEIA 96

Query: 115 DIDLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCS 160
             +  +   T LF    H  N   Q        D ++L    T              L S
Sbjct: 97  QQNRTNGIRTLLFVDEVHRFNKAQQDAFLPYIEDGTILFIGATTENPSFELNNA---LLS 153

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMF------ADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           R   A +  +    +  +  VI +        A++ I     +   + Q ++     A  
Sbjct: 154 R---ARIYLLKKLSEAEIIAVIDQACSSVDGLANKNIQFVGDVKEKLAQLVQGDARKALN 210

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
            ++ + ++A+     ++ +L  ++LKE    +
Sbjct: 211 YLELLADMAIDSEQSLSINL--DLLKEIAGRE 240


>gi|325114387|emb|CBZ49944.1| hypothetical protein NCLIV_004280 [Neospora caninum Liverpool]
          Length = 762

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 59/162 (36%), Gaps = 35/162 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108
           R V+L G SG GK+ LA   +++  +                   +N+ +  +     + 
Sbjct: 228 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 287

Query: 109 KPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             + +++ID +                 QL  +++ +    + +++ A   P      L 
Sbjct: 288 CLLFIDEIDSIASKRDKTQGEVEKRIVAQLLTLMDGVSSDKNIVVLAATNRPNQLDPALR 347

Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               R  +    ++I +PD+    +++ K  A   + +   +
Sbjct: 348 ----RFGRFDREIEIPIPDEQGRTEILKKKAAK--MNLGSDV 383


>gi|294494935|ref|YP_003541428.1| ATPase AAA [Methanohalophilus mahii DSM 5219]
 gi|292665934|gb|ADE35783.1| AAA family ATPase, CDC48 subfamily [Methanohalophilus mahii DSM
           5219]
          Length = 743

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 17/73 (23%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDS---WP-SWPSRV----------VILVGPSGSGKSCLA 81
             +  DD+     ++ A + I     WP  WP ++          ++L GP G+GK+ LA
Sbjct: 459 PSVGWDDI---GGLDLARQDISEAVEWPLKWPDKISQMGIKPPTGILLYGPPGTGKTLLA 515

Query: 82  NIWSDKSRSTRFS 94
              ++++ +   S
Sbjct: 516 QAVANEANANFIS 528



 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 69/207 (33%), Gaps = 52/207 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + VIL GP G+GK+ +A   + +S +   +     +                D    +
Sbjct: 221 PPKGVILYGPPGTGKTLIARAVASESNAYFINIAGPEIMGKYYGESEERLRKIFDEAAEN 280

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A          
Sbjct: 281 APSIIFVDEIDSIAPKREDVTGEVERRVVAQLLTLMDGMDERKQVVVIAAT---NRLDSI 337

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL----------------- 197
            P L    +    ++I +PD +   +++      R + +++ +                 
Sbjct: 338 DPALRRPGRFDREIEIGVPDSEDRLEILQ--IHTRGMPLNENIDEEYFEHLAEYTQGFVG 395

Query: 198 AAYIVQRMERSLVFAEKLV--DKMDNL 222
           A  +    E S+    +L+    +D  
Sbjct: 396 ADLLALVQEASMRALRRLLPDINLDEE 422


>gi|220935170|ref|YP_002514069.1| recombination factor protein RarA [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996480|gb|ACL73082.1| recombination factor protein RarA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 447

 Score = 44.0 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G+GK+ LA + +    +   +  A       I        E    +    T L
Sbjct: 55  MLFWGPPGTGKTTLARMIAHYCGAQFLTLSAVLSGVKDIRAAVEQARE-YRRMHGKPTVL 113

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR++      +  
Sbjct: 114 FVDEVHRFNKSQQDAFLPHVEDGTIAFVGATTENPSFELNNA---LLSRVR---TYVLKA 167

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             D  +  +I +  AD       R + +  +L   + +  +     A + ++ ++  A
Sbjct: 168 LTDGDIRAIIDRALADEERGLGGRHLHMADELRDRLARAAD---GDARRALNLLEIAA 222


>gi|295098785|emb|CBK87874.1| Recombination protein MgsA [Eubacterium cylindroides T2-87]
          Length = 445

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 22/135 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I + ++ S    FS +   +  I    ++     D   +    T
Sbjct: 53  MIFWGPPGVGKTTLARIIAHQTESYFVDFSAVTSGIKEIKEVMKQA----DQRKVLGQKT 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  S +L+ A T   S+ +    L SR     V  ++ 
Sbjct: 109 ILFVDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSA-LLSR---CRVFVLNA 164

Query: 173 PDDDFLEKVIVKMFA 187
            +   LE +I +  +
Sbjct: 165 LEQKDLEDLIFRAIS 179


>gi|320164282|gb|EFW41181.1| valosin-containing protein [Capsaspora owczarzaki ATCC 30864]
          Length = 813

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +    + ++M A   P S    
Sbjct: 297 APSIIFIDELDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRSNVVVMAATNRPNSLDPA 356

Query: 155 L 155
           L
Sbjct: 357 L 357



 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 77/216 (35%), Gaps = 42/216 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PS+ V+  GP G GK+ LA   +++ ++                   SN+    D     
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESESNVRDVFDKARSA 569

Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
               +  +++D +  +                 Q+   ++ ++   +  ++ A   P   
Sbjct: 570 APCVLFFDELDSIAKSRGGSSGDAGGASDRVINQILTEMDGMNVKKNVFIIGATNRPDII 629

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMER-S 208
              +  L   RL    ++ I LPD+     ++    A R+  I   +   Y+ +     S
Sbjct: 630 DSAV--LRPGRLD--QLIYIPLPDEPSRLAIL--KAALRKSPIAPDVDIDYLARSTNGFS 683

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                ++  +   LA+     I + LA E  ++ Q+
Sbjct: 684 GADLTEICQRACKLAIRE--SIDKELARERERKAQR 717


>gi|305663593|ref|YP_003859881.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378162|gb|ADM28001.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
          Length = 484

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 76/205 (37%), Gaps = 41/205 (20%)

Query: 55  LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-----------NIAKSLDSI 103
           +I   P  P  ++I+ GP G GKS  A   +                     + + +   
Sbjct: 243 IISKAPYAPKGILII-GPPGVGKSVTAETIAGGLGLKLVEIRPSIYRSMWYGLTEKILEH 301

Query: 104 LIDTRK-----PVLLEDID----------LLDFNDTQLFHIINSIHQYDSSLLMTARTFP 148
           L+   K      +L++D+D              ++  +F  +  + +    LL+     P
Sbjct: 302 LLKGLKNRKNIAILMDDVDFLVGRQISIHETHISEITIF--LRYLQEPSRPLLIMTTNTP 359

Query: 149 VSWGVCLPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
                 L      ++      +V +  PD +F   + +K     +I +D+ +   I +R+
Sbjct: 360 ELLDPAL------MRPGRIDVIVVMGYPDKEFRRYIALKSAERYRIKLDENILNSI-ERI 412

Query: 206 ERSLVFAEKLVDKMDNLALSRGMGI 230
            R    AE  +D +  LA S+G GI
Sbjct: 413 TRWFTNAE--IDALIRLAASKGDGI 435


>gi|254568756|ref|XP_002491488.1| AAA-type ATPase that is regulated by Vta1p [Pichia pastoris GS115]
 gi|238031285|emb|CAY69208.1| AAA-type ATPase that is regulated by Vta1p [Pichia pastoris GS115]
 gi|328352002|emb|CCA38401.1| Vacuolar protein sorting-associating protein 4 [Pichia pastoris CBS
           7435]
          Length = 426

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 34/145 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 160 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 209

Query: 123 DTQLFHIINSIHQYDSSLLMT----ARTFPVSWGVCLPDLCSRLKAATVVKI----SLPD 174
             QLF   N   +   S++      A   P        D   R+K   +V++    +  D
Sbjct: 210 -KQLF---NMARENKPSIIFIDEVDALCGPRGENES--DASRRIKTELLVQMNGVGNDSD 263

Query: 175 DDF----------LEKVIVKMFADR 189
                        L+  I + F  R
Sbjct: 264 GVLVLGATNIPWQLDAAIRRRFEKR 288


>gi|254246062|ref|ZP_04939383.1| ATPase [Burkholderia cenocepacia PC184]
 gi|124870838|gb|EAY62554.1| ATPase [Burkholderia cenocepacia PC184]
          Length = 441

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 55  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 113

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +   +
Sbjct: 114 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLN 169

Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           DD + +++ +    A   +  D K    +V   +     A + ++ ++  
Sbjct: 170 DDEMRQLLKRAQEIALDGLAFDDKAIDTLVGYAD---GDARRFLNLLEQA 216


>gi|331269735|ref|YP_004396227.1| ATPase [Clostridium botulinum BKT015925]
 gi|329126285|gb|AEB76230.1| ATPase, AAA family [Clostridium botulinum BKT015925]
          Length = 419

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 75/200 (37%), Gaps = 36/200 (18%)

Query: 67  VILVGPSGSGKSCLANIW------------SDKSRSTRFSNIAKSLDSIL--IDTRKPVL 112
           +IL GP G GK+ LA+I             +  +         K  + +L     R    
Sbjct: 54  IILYGPPGVGKTTLAHIISLDTKSEFVKLNATSAGVKEIREYIKKAEEVLKFYGKRTIFF 113

Query: 113 LEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +++I  L        L        +    +L+ A T    + +    L SR   + + ++
Sbjct: 114 IDEIHSLKKGSQQDALL----EAIEKGIVILIGATTENPYFEINRA-LLSR---SKIFQL 165

Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               ++ + +V+     D  R      I ID+++   IV ++  S   A   ++ ++   
Sbjct: 166 ESLKENEIVEVLQMALKDSTRGYGNLKINIDEEVLK-IVAKL--SGGDARGSLNTLELAI 222

Query: 224 LSRGMGI--TRSLAAEVLKE 241
           LS       + ++  E++KE
Sbjct: 223 LSTPRRSDGSIAINKEIIKE 242


>gi|325833397|ref|ZP_08165846.1| ATPase, AAA family [Eggerthella sp. HGA1]
 gi|325485321|gb|EGC87790.1| ATPase, AAA family [Eggerthella sp. HGA1]
          Length = 446

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 24/141 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSI-----LIDTRKPVL 112
           VIL GP+G+GK+ LA++ ++ +++T           S++ + +D+          R  + 
Sbjct: 56  VILFGPAGTGKTSLAHVIAETTKATFVEVSAIGGTVSDLRREIDAADKRLSAFGLRTILF 115

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I   +      L H      +    +L+ A T    + V    L SR   + VV++ 
Sbjct: 116 VDEIHRFNRSQQDALLH----AVEDRVLVLVGATTENPFFEVNSA-LISR---SRVVELH 167

Query: 172 LPDDDFLEKVIVKMFAD-RQI 191
              D+ +  ++ +   D R +
Sbjct: 168 GLSDEEIVSLVERALVDERGL 188


>gi|313113296|ref|ZP_07798900.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624388|gb|EFQ07739.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 264

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 21/124 (16%)

Query: 50  EQAVRLIDSWP--SWPSRVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNI 96
             A   ++ W      +  ++L G  G+GKS  A   ++              +   +++
Sbjct: 96  GMAHSYVERWEQMKEGNHGLLLWGKVGTGKSYFAGCIANALMEQEIPVRMTNFALILNDL 155

Query: 97  AKSLDSI-----LIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFP 148
           A S +        +     ++++D  +    +  L  + N I   ++    L++T    P
Sbjct: 156 AASFEGRNEYIDRLCRYPLLIIDDFGMERGTEYGLEQVYNVIDSRYRSGKPLIVTTNHTP 215

Query: 149 VSWG 152
               
Sbjct: 216 DMLE 219


>gi|305673951|ref|YP_003865623.1| ATPase putative involved in protein degradation [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|305412195|gb|ADM37314.1| ATPase possibly involved in protein degradation [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 423

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 21/142 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS----------TRFSNIAKSLDSILIDTRKPVLLE 114
           R ++L GP G+GK+ L    +    +          T    I + + +        +++E
Sbjct: 221 RGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFTSSETIEEVIQAARRLAPAVLVIE 280

Query: 115 DIDLLDFNDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DID +  +    F  +N+       +   L+    +P      L +   R   A   +I 
Sbjct: 281 DIDSMPEDVRSFF--LNTLDGATSKEGLFLIGTTNYPEEIDPGLMNRAGRFDRA--YEIG 336

Query: 172 LPDDDFLEKVIVKMFADRQIFI 193
           LPD++      ++    R   I
Sbjct: 337 LPDEELR----LEYMKMRGFDI 354


>gi|158337198|ref|YP_001518373.1| recombination factor protein RarA/unknown domain fusion protein
           [Acaryochloris marina MBIC11017]
 gi|158307439|gb|ABW29056.1| ATPase, AAA family protein [Acaryochloris marina MBIC11017]
          Length = 742

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 25/149 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124
           +I  GP G+GK+ LA I ++ +++      A +     I   +  + E  D        T
Sbjct: 55  LIFYGPPGTGKTTLAQIIANTTQAHFL---ALNAVLAGIKDIRSSVDEAQDRRGQYGQRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V    L SR   + + ++  
Sbjct: 112 ILFVDEVHRFNKAQQDALLPWVENGTVILIGATTENPYFEVNKA-LVSR---SRIFQLRS 167

Query: 173 --PDDDFLEKVIVKMFADRQIFIDKKLAA 199
             PDD  L +V+ +   D+          
Sbjct: 168 LMPDD--LRQVLERALQDKYFGYGDTAIE 194


>gi|172059904|ref|YP_001807556.1| recombination factor protein RarA [Burkholderia ambifaria MC40-6]
 gi|171992421|gb|ACB63340.1| AAA ATPase central domain protein [Burkholderia ambifaria MC40-6]
          Length = 436

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 23/180 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +   +
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLQSLN 164

Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRGMGIT 231
           DD + +++ +    A   +  D K    ++   +     A + ++ ++     +    IT
Sbjct: 165 DDEMRQLLKRAQEIALDGLAFDDKAVDTLIGYAD---GDARRFLNLLEQAQTAAASSRIT 221


>gi|213404048|ref|XP_002172796.1| 19S proteasome regulatory subunit Rpt5 [Schizosaccharomyces
           japonicus yFS275]
 gi|212000843|gb|EEB06503.1| 19S proteasome regulatory subunit Rpt5 [Schizosaccharomyces
           japonicus yFS275]
          Length = 439

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++          
Sbjct: 219 PPKGALMYGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 278

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +      D   ++ A     + 
Sbjct: 279 SPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTL 338

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL      +  LP+++    ++      R++ +   +
Sbjct: 339 DPAL--LRSGRLDRKL--EFPLPNEEARVGIL--RIHSRKMTVADDI 379


>gi|158339883|ref|YP_001521052.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158310124|gb|ABW31739.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 249

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 41/172 (23%)

Query: 15  KQKNDQPKNKEEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSR 65
           +Q        E QL        F F     +             A+        W     
Sbjct: 46  EQNRISRALSEAQLPYGKSWTNFEFDHIPSL----------NPAALMEFSQTTHWLESGS 95

Query: 66  VVILVGPSGSGKSC------------------LANIWSDKSRSTRFSNIAKSLDSILIDT 107
            +++ GPSG+GK+                   L      +        +        +D 
Sbjct: 96  NILIFGPSGTGKTHVSSALGTSMIELGKRVKFLTATALVQQLQLAKLQLELQSLLSKLDR 155

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
              ++++D+  +  +D +   LF +I +      SLL+TA      W    P
Sbjct: 156 YDLLIIDDLGYVQKSDVETSVLFELI-AHRYERKSLLITANQPFSQWDKIFP 206


>gi|158294507|ref|XP_315644.3| AGAP005630-PA [Anopheles gambiae str. PEST]
 gi|157015594|gb|EAA44058.3| AGAP005630-PA [Anopheles gambiae str. PEST]
          Length = 804

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLADDVDLEQI----AAESHGHVGA 406

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 407 DLASLC------SEAALQQIREKMD 425



 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|300770508|ref|ZP_07080387.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762984|gb|EFK59801.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 439

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 34/201 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FND 123
             +IL GP G GK+ LA + +       FS  A       I      ++E  D L  FN 
Sbjct: 55  PSMILWGPPGVGKTTLALLMAKALDRPFFSLSAIQSGVKDIRE----VIEKADQLQKFNQ 110

Query: 124 TQ--LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
            Q  LF    H  +           +     L+ A T   S+ V    L SR     V  
Sbjct: 111 EQPILFIDEIHRFSKSQQDSLLGAVERGLVTLIGATTENPSFEVISA-LLSR---CQVYV 166

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDK--KLAAY-IVQRMERSLVFAEKLVDKMD---NLA 223
           +    ++ L  ++    ++ +   ++  ++  Y  + R+  S   A KL++ ++   N +
Sbjct: 167 LKHLTEEELIGIVNSAISEDEFLKEEKIEVKEYEALLRL--SGGDARKLLNVLELVVNAS 224

Query: 224 LSRGMGITRSLAAEVLKETQQ 244
           LS    IT      VLK+ QQ
Sbjct: 225 LSLNKPITNEF---VLKQVQQ 242


>gi|206561377|ref|YP_002232142.1| recombination factor protein RarA [Burkholderia cenocepacia J2315]
 gi|198037419|emb|CAR53354.1| putative ATPase protein [Burkholderia cenocepacia J2315]
          Length = 441

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 55  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 113

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +   +
Sbjct: 114 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLN 169

Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           DD + +++ +    A   +  D K    +V   +     A + ++ ++  
Sbjct: 170 DDEMRQLLKRAQEIALDGLAFDDKAIDTLVGYAD---GDARRFLNLLEQA 216


>gi|167464003|ref|ZP_02329092.1| recombination factor protein RarA [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382959|ref|ZP_08056791.1| RarA-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153079|gb|EFX45537.1| RarA-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 434

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 21/137 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND 123
           ++L GP G+GK+ LANI S +++         ++D+ + D R+  ++E       L    
Sbjct: 54  ILLYGPPGTGKTTLANIISKRTQGQFVK--LNAVDASVKDVRE--VIEQAKQTKALYGRK 109

Query: 124 TQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           T LF    H  NS  Q           ++    T    +      L SR   +T+ ++  
Sbjct: 110 TILFLDEVHRFNSARQDALLPAVEQGIIVFIGATTENPFHYVNGALLSR---STLFQLRA 166

Query: 173 PDDDFLEKVIVKMFADR 189
              +     + +  ADR
Sbjct: 167 LTPEHALLAMRRALADR 183


>gi|8886769|gb|AAF80563.1|AF218313_1 putative helicase RUVBL [Homo sapiens]
 gi|55661736|emb|CAH73665.1| Werner helicase interacting protein 1 [Homo sapiens]
          Length = 445

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  S+      +  S  +   +      + D+     N+ 
Sbjct: 42  PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 96

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 97  SFFKRKTILFIDEIHRFNKSQQD 119


>gi|116493046|ref|YP_804781.1| recombination factor protein RarA [Pediococcus pentosaceus ATCC
           25745]
 gi|116103196|gb|ABJ68339.1| Recombination protein MgsA [Pediococcus pentosaceus ATCC 25745]
          Length = 425

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 27/169 (15%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  S   K      +    S   + I   +        +LL++I 
Sbjct: 41  MILYGPPGTGKTSIASAISGSTKYAFRILNAATDSKKDLQIVAEEAKMSGTVILLLDEIH 100

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL--P 173
            LD    D  L H+ N      + +L+ A T      +  P + SR     + ++    P
Sbjct: 101 RLDKTKQDFLLPHLEN-----GNIILIGATTENPYININ-PAIRSR---TQIFEVKPLQP 151

Query: 174 DDDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
           D+     +     + R +      ID+    ++ +     L  A   V+
Sbjct: 152 DEIKKAVLAAIKDSSRGLGELPIVIDEDALKFVSESTNGDLRSALNAVE 200


>gi|332251955|ref|XP_003275117.1| PREDICTED: nuclear valosin-containing protein isoform 1 [Nomascus
           leucogenys]
          Length = 855

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LAN  + +         A  +                +  + +
Sbjct: 296 PPRGVLLHGPPGCGKTLLANAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 355

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 356 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 415

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 416 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 455


>gi|296416602|ref|XP_002837964.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633858|emb|CAZ82155.1| unnamed protein product [Tuber melanosporum]
          Length = 503

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 21/116 (18%)

Query: 65  RVVILVGPSGSGKSCL---------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
           R  +L GP G+GK+ L           +++    +   ++   +    ++ +R  VLLED
Sbjct: 255 RGYLLYGPPGTGKTSLSIALAGLFNLEVYALSLSAGSLTDDTLATLFTMLPSRCIVLLED 314

Query: 116 IDLL----DFNDTQLFHIIN----SIHQYDSSLLMTA----RTFPVSWGVCLPDLC 159
           +D        +    F ++N    +  +    L+MT     R  P        DL 
Sbjct: 315 VDASNVKRAADPPTSFGLLNAIDGAASREGRILIMTTNHRERLDPALIRPGRVDLQ 370


>gi|168034023|ref|XP_001769513.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679224|gb|EDQ65674.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 816

 Score = 44.0 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 75/201 (37%), Gaps = 52/201 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 247 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
               + +++ID +                 QL  +++ +      ++M A   P      
Sbjct: 307 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 366

Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       + +PD   RL+   VV+I   +    E V + K+  D   F+   LAA
Sbjct: 367 LRRFGRFDREIDIGVPDEVGRLE---VVRIHTKNMKLAEDVDLEKIAHDTHGFVGADLAA 423

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
              +         + + +KMD
Sbjct: 424 LCTE------AALQCIREKMD 438



 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 520 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 576


>gi|323142310|ref|ZP_08077142.1| replication-associated recombination protein A
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413194|gb|EFY04081.1| replication-associated recombination protein A
           [Phascolarctobacterium sp. YIT 12067]
          Length = 428

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 20/147 (13%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           R+I+       + V+  GP G+GK+ LA + +  +     +  A S     +        
Sbjct: 46  RMIERD---VLQSVLFYGPPGTGKTTLAKVIAHVTGEKFEAINAVSSGVPELRKLIAKAQ 102

Query: 114 EDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR 161
           ED        T +F    H  N           +  + +L+ A T    + +  P L SR
Sbjct: 103 ED-RRSGRGRTIVFIDEIHRFNKAQQDVLLPYVENGTIVLIGATTENPFFEINSP-LLSR 160

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD 188
           +K   + K+  P    +++++ +  AD
Sbjct: 161 MKVVRLEKLQAP---QIQQILERAIAD 184


>gi|313652041|ref|YP_004046719.1| Chromosomal replication initiator DnaA [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940792|gb|ADR19983.1| Chromosomal replication initiator DnaA [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 485

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLANI 83
               S D+ LV S    A   + S        +++ L GP+G GK+ L + 
Sbjct: 121 NTKYSFDNYLVDSTNHSAYMTMKSVAEGNYGGKIITLYGPTGVGKTHLVSA 171


>gi|218884579|ref|YP_002428961.1| proteasome-activating nucleotidase [Desulfurococcus kamchatkensis
           1221n]
 gi|218766195|gb|ACL11594.1| proteasome-activating nucleotidase [Desulfurococcus kamchatkensis
           1221n]
          Length = 418

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ LA   + +S +T  + +   L    I     ++ E
Sbjct: 184 PPKGVLLYGPPGCGKTMLAKAVAAESNATFIAIVGSELVQKFIGEGARIVRE 235


>gi|218201158|gb|EEC83585.1| hypothetical protein OsI_29256 [Oryza sativa Indica Group]
          Length = 837

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P + ++L GP G+GK+ LA   + +S +         + S +    +             
Sbjct: 248 PPKGILLYGPPGTGKTLLARAIAAESGAHFVVVNGPEIMSGMPGESEANLRAVFAEADAA 307

Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +  +              QL  +++ +      +++ A   P S    
Sbjct: 308 APSIVFMDEIDSIAPSREKAHGEVERRVVSQLLTLMDGLRPRAQVIVIGATNRPNSLDPA 367

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+  L ++ +     + + +   +
Sbjct: 368 LR----RFGRFDRELDIGVPDE--LGRLEILRIHTKNMPLSDDV 405


>gi|118586592|ref|ZP_01544033.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
 gi|290890861|ref|ZP_06553927.1| hypothetical protein AWRIB429_1317 [Oenococcus oeni AWRIB429]
 gi|118432971|gb|EAV39696.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
 gi|290479512|gb|EFD88170.1| hypothetical protein AWRIB429_1317 [Oenococcus oeni AWRIB429]
          Length = 429

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 37/200 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIA--------KSLDSILIDTRKPVLLEDID 117
           +IL G  G+GK+ +A+  +  +  S R  N A        +  +   +     +LL++I 
Sbjct: 43  MILYGEPGTGKTSIASAIAGSTELSFRILNAATDGKKELQEVAEEGKMSGSVILLLDEIH 102

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      V  P + SR     +  +    +
Sbjct: 103 RLDKTKQDFLLPHL-----ESGRIVLIGATTENPYLSVT-PAIRSR---TQIFHVEALSE 153

Query: 176 DFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
             ++  I +  +D+        I +D +   ++              ++ ++   LS   
Sbjct: 154 KDIKTAINRALSDKENGLGNYNIKLDDQAKNHLSTATN---GDLRSALNGLELAVLSTKA 210

Query: 229 -------GITRSLAAEVLKE 241
                   IT  +  E ++ 
Sbjct: 211 VGKEKEIHITLPIIEETIQR 230


>gi|160893530|ref|ZP_02074315.1| hypothetical protein CLOL250_01082 [Clostridium sp. L2-50]
 gi|156864925|gb|EDO58356.1| hypothetical protein CLOL250_01082 [Clostridium sp. L2-50]
          Length = 813

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFN 122
              + G SG+GKS L   +  K +   F     + + + I     RK V+++DI  L + 
Sbjct: 31  TAYIFGVSGTGKSELITHYLGKRKYNLFHAGEITAEDLEIPEETARKIVVIDDIHELTWE 90

Query: 123 DTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCL 155
           +       I N I + D  +++  R     W   L
Sbjct: 91  EDDELRNAIFNLIIREDIWMILAGRCPVPPWLSTL 125


>gi|282858602|ref|ZP_06267764.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010]
 gi|282588606|gb|EFB93749.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010]
          Length = 423

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 22/192 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-----------LIDTRKPVL- 112
            IL GP G GK+ LA I + K  +     S +   +  +                 P+L 
Sbjct: 41  FILWGPPGVGKTTLAQIIAHKLETPFYTLSAVTSGVKDVREVIEKAKSNRFFSANSPILF 100

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +     L+ A T   S+ V  P L SR +  T+  + 
Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEKGIVTLIGATTENPSFEVIRP-LLSRCQLYTLKSLE 155

Query: 172 LPD-DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL-SRGMG 229
             D    L++ I +    +++ I       +++           ++D + +  L    + 
Sbjct: 156 QKDLLALLQRAITEDIELKKLKIKLTETKALLRYSGGDARKLLNILDLIVSATLEEEKVD 215

Query: 230 ITRSLAAEVLKE 241
           IT +L  E L++
Sbjct: 216 ITDNLVEERLQQ 227


>gi|238926943|ref|ZP_04658703.1| recombination ATPase [Selenomonas flueggei ATCC 43531]
 gi|238885177|gb|EEQ48815.1| recombination ATPase [Selenomonas flueggei ATCC 43531]
          Length = 447

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 23/141 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I + ++++    FS +   +  I    ++     D   +     
Sbjct: 55  MIFWGPPGVGKTTLAQIIAARTKAEFITFSAVTSGIKEIRTVMQEA----DRRRMYGERI 110

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  S +L+ A T   S+ +    L SR     V  +  
Sbjct: 111 VVFVDEIHRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINNA-LLSR---CRVFVLQG 166

Query: 173 PDDDFLEKVIVKMFA-DRQIF 192
             +  +E+++    A DR++ 
Sbjct: 167 LTEADIERLLRHAIATDRELS 187


>gi|221642198|ref|YP_002533285.1| istB protein [Bacillus cereus Q1]
 gi|222094105|ref|YP_002528162.1| transposase (23) [Bacillus cereus Q1]
 gi|222096110|ref|YP_002530167.1| transposase (23) [Bacillus cereus Q1]
 gi|222096551|ref|YP_002530608.1| transposase (23) [Bacillus cereus Q1]
 gi|222098098|ref|YP_002532155.1| transposase (23) [Bacillus cereus Q1]
 gi|222098907|ref|YP_002532965.1| transposase (23) [Bacillus cereus Q1]
 gi|221238160|gb|ACM10870.1| transposase (23) [Bacillus cereus Q1]
 gi|221240168|gb|ACM12878.1| transposase (23) [Bacillus cereus Q1]
 gi|221240609|gb|ACM13319.1| transposase (23) [Bacillus cereus Q1]
 gi|221242156|gb|ACM14866.1| transposase (23) [Bacillus cereus Q1]
 gi|221242966|gb|ACM15676.1| transposase (23) [Bacillus cereus Q1]
 gi|221243133|gb|ACM15842.1| istB protein [Bacillus cereus Q1]
          Length = 254

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 39/140 (27%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------- 110
           IL+GP G GK+ LA  ++ ++ +  ++ +  S D ++   RK                  
Sbjct: 103 ILLGPPGVGKTHLAVSFAIEAITQGYTALFLSADDLVAQCRKANDKGTLQRLVNRWSRPD 162

Query: 111 -VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            ++++++    F++      F +++  ++  + +L T+               S L+   
Sbjct: 163 VLIVDEVGYFPFDELTANVFFQVVSKRYEQGAMIL-TSN-------------KSYLEWGK 208

Query: 167 VVKISLPDDDFLEKVIVKMF 186
           V      DD     ++ ++ 
Sbjct: 209 VFG----DDVLATAILDRLL 224


>gi|94502201|ref|ZP_01308696.1| chromosomal replication initiator protein DnaA [Oceanobacter sp.
           RED65]
 gi|94425662|gb|EAT10675.1| chromosomal replication initiator protein DnaA [Oceanobacter sp.
           RED65]
          Length = 181

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 32/76 (42%)

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            V +  P+ +    +++K      I +  + A ++ Q++  ++   E  + ++   +   
Sbjct: 5   TVAVEPPELETRVAILMKKAEQEGIDLPHEAAFFVAQKIRSNVRELEGALKRVIANSAFT 64

Query: 227 GMGITRSLAAEVLKET 242
           G  IT     E LK+ 
Sbjct: 65  GSKITLPFIKESLKDL 80


>gi|331085539|ref|ZP_08334623.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407426|gb|EGG86928.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 438

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 78/202 (38%), Gaps = 37/202 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA + ++ + +  T+ +        +    R+    +D   +    T
Sbjct: 55  IIFYGPPGTGKTTLAKVIANTTSANFTQINATVAGKKDMEEVVRQA---KDNQGMYGKKT 111

Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V    L SR   +++ ++  
Sbjct: 112 ILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SSIFELKP 167

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            + + + ++I++   D  R +      ID+    ++          A   ++ ++   L+
Sbjct: 168 LEKEDIRRLIMRALTDEERGMGSYHAIIDEDALEFLADICG---GDARNALNAIELGVLT 224

Query: 226 RGMG------ITRSLAAEVLKE 241
                     IT  + +E +++
Sbjct: 225 TERSEDGKIHITIDVVSECIQK 246


>gi|319953175|ref|YP_004164442.1| microtubule-severing atpase [Cellulophaga algicola DSM 14237]
 gi|319421835|gb|ADV48944.1| Microtubule-severing ATPase [Cellulophaga algicola DSM 14237]
          Length = 435

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 16/72 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           ++L GP G GK+ LA   + +  +   +     +  + I + +                 
Sbjct: 194 ILLYGPPGCGKTHLARATAGEINANFINVGINDILDMWIGSSERNLHEIFETARENTPCV 253

Query: 111 VLLEDIDLLDFN 122
           + +++ID L  N
Sbjct: 254 IFIDEIDALGAN 265


>gi|153000734|ref|YP_001366415.1| recombination factor protein RarA [Shewanella baltica OS185]
 gi|151365352|gb|ABS08352.1| AAA ATPase central domain protein [Shewanella baltica OS185]
          Length = 443

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 35/196 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++L GP G+GK+ LA + +  S +   R S +   +  I         +E    +     
Sbjct: 52  MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAKAVAESRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           I     D +  ++ +  +D        Q  +   +   + Q  +     A  L++ M ++
Sbjct: 162 IKRLSHDEIAHIVTQALSDTERGLGQHQFVMPTDVLTTLAQLCDGDARKALNLIELMSDM 221

Query: 223 ALSRGMGITRSLAAEV 238
            L+ G   T  +  +V
Sbjct: 222 -LADGGTFTTEMLIQV 236


>gi|70993728|ref|XP_751711.1| AAA family ATPase [Aspergillus fumigatus Af293]
 gi|66849345|gb|EAL89673.1| AAA family ATPase, putative [Aspergillus fumigatus Af293]
 gi|159125367|gb|EDP50484.1| AAA family ATPase, putative [Aspergillus fumigatus A1163]
          Length = 539

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 74/219 (33%), Gaps = 37/219 (16%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94
           LV         LI+         +IL G +G+GK+ +A + +    S             
Sbjct: 139 LVGP-NGVLRGLIEQDR---VPSMILWGHAGTGKTTIARVIASMVGSRFVEINSTSTGVA 194

Query: 95  ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                 A++   + +  RK ++  ++I     +   +F       +     L+ A T   
Sbjct: 195 ECKKIFAEARSELGLTGRKTIVFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENP 251

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQ 203
           S+ V    L SR        +S   D+ ++ ++ +              +D +L  Y+ +
Sbjct: 252 SFKVQNA-LLSR---CRTFTLSKLSDEDVKSILDRALRVEGPNYSPSSLVDDELIEYLAR 307

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             +     A   ++ ++            S+  E LK +
Sbjct: 308 FSD---GDARTSLNLLELAMDLSKRP---SMTKEELKRS 340


>gi|331010747|gb|EGH90803.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 440

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      RQ+ +  +    ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVHRALTEERGLGKRQLTLSDEGFTILMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDVELLQSLLGDSRR 239


>gi|304570584|ref|YP_388490.2| recombination factor protein RarA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 428

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 59/162 (36%), Gaps = 14/162 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120
             ++  GP G GKS +A + +  +     R S     L  +   +   + ++L+++    
Sbjct: 60  PSLLFFGPPGCGKSTIALLLARNTGQKYIRISAPEAGLQQLRKSLAGVRILVLDELHRFS 119

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                 F     + +     L+ + T   S+ V    L SR+    V+++       L  
Sbjct: 120 KAQQDFFLP---VLESGEVTLLASTTENPSFSVTRQ-LLSRM---HVLRLKPLAHSDLLT 172

Query: 181 VIVKMFADRQIFIDKKLAAYI--VQRME-RSLVFAEKLVDKM 219
           +  +    +   +   +   +  V   + R+L+   + V  +
Sbjct: 173 LARRGAEAQGAALKDDVCEMLATVAHGDARTLLNLVEYVAGL 214


>gi|288560704|ref|YP_003424190.1| proteasome-activating nucleotidase [Methanobrevibacter ruminantium
           M1]
 gi|288543414|gb|ADC47298.1| proteasome-activating nucleotidase [Methanobrevibacter ruminantium
           M1]
          Length = 424

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + ++L GP G+GK+ LA   ++++ +T    +A       I     ++ E  +L 
Sbjct: 198 PPKGILLYGPPGTGKTLLAKAVANETNATFIKVVASEFVKKYIGEGARMVREVFELA 254


>gi|255036227|ref|YP_003086848.1| hypothetical protein Dfer_2465 [Dyadobacter fermentans DSM 18053]
 gi|254948983|gb|ACT93683.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053]
          Length = 379

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-----LEDID 117
            ++V+IL G    GK+ L     ++         A+ LD + + + + V      + D+D
Sbjct: 17  SNKVLILYGARRVGKTHLMREVEEQFNGKSLFLNAEDLDIVALLSDRRVASFRRWVTDVD 76

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
           LL  ++ Q+      + +   SL +   +FP 
Sbjct: 77  LLIIDEAQV------VPEIGKSLKLLIDSFPK 102


>gi|78485111|ref|YP_391036.1| recombination factor protein RarA [Thiomicrospira crunogena XCL-2]
 gi|78363397|gb|ABB41362.1| Recombination protein MgsA [Thiomicrospira crunogena XCL-2]
          Length = 453

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 19/131 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + + +S   +F N++  LD +  + R  V    +    F    L
Sbjct: 46  MIFWGPPGTGKTTLARLIAKQSD-LQFLNLSAVLDGV-KEVRAAVEQAKLHRQQFQQGSL 103

Query: 127 F-----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
                 H  N           +  + + + A T   S+ +    L SR   A V  +   
Sbjct: 104 LFVDEVHRFNKAQQDAFLPFVEDGTFIFIGATTENPSFELNNA-LLSR---ARVYVLRSL 159

Query: 174 DDDFLEKVIVK 184
           D+D L++V+ +
Sbjct: 160 DEDDLQQVLNR 170


>gi|70726294|ref|YP_253208.1| recombination factor protein RarA [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447018|dbj|BAE04602.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 422

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 39/200 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  +          +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTDYKFRQLNAVTNSKKDMQMVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYSL 151

Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           D D +   I +   D  R +      +D+    Y   +   S       ++ ++   LS 
Sbjct: 152 DHDDVRLAINRALNDSQRGLANYHPKVDEDALEYFATQ---SQGDVRSALNALELAVLSA 208

Query: 227 G-----MGITRSLAAEVLKE 241
                   IT   A + L++
Sbjct: 209 SVENEIRHITLQDAKDCLQK 228


>gi|325120061|emb|CBZ55613.1| hypothetical protein NCLIV_060380 [Neospora caninum Liverpool]
          Length = 415

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 69/181 (38%), Gaps = 40/181 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 194 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFELAKEK 253

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A   P   
Sbjct: 254 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRPDVL 313

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     +++  P+++  E+++      R++ ++K+   +  + + RS  
Sbjct: 314 DPAL--LRSGRLD--RKIELPHPNEEARERILQIHA--RKMNVNKQDVNF--RELARSTD 365

Query: 211 F 211
            
Sbjct: 366 D 366


>gi|317026370|ref|XP_001389502.2| hypothetical protein ANI_1_3008014 [Aspergillus niger CBS 513.88]
          Length = 781

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 17/75 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--------RFSNIAKSLDSILIDTRKPV-----LL 113
           V+L GP G+GK+ LA   +++ ++T          S+IA   +  +             +
Sbjct: 512 VLLHGPPGTGKTHLARAIANEFKATMLWVKPADIVSDIAGDAEKAIHAAFTLAKKLSPCI 571

Query: 114 EDIDLLDFNDTQLFH 128
             ID +D     LFH
Sbjct: 572 LFIDEVD----ALFH 582


>gi|289621142|emb|CBI51925.1| unnamed protein product [Sordaria macrospora]
          Length = 824

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 257 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 316

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 317 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 374

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 375 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 414


>gi|162447688|ref|YP_001620820.1| Holliday junction DNA helicase-like ATPase [Acholeplasma laidlawii
           PG-8A]
 gi|161985795|gb|ABX81444.1| Holliday junction DNA helicase-like ATPase [Acholeplasma laidlawii
           PG-8A]
          Length = 412

 Score = 44.0 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 71/187 (37%), Gaps = 28/187 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF--------SNIAKSLDSILIDTRKPVLLEDIDL 118
            IL GP G+GK+ +A ++SDKS    +            K +  +       +++++I  
Sbjct: 41  FILYGPPGTGKTTIAKLFSDKSMLDTYFFNASTDNKAKLKDILDMTAYHDVLIIVDEIHR 100

Query: 119 LDFN-DTQLFHIINSIHQYDSSLL--MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           +  +    L        +   +++  +T      S  + +    SR     + +I    D
Sbjct: 101 MKTDIQDYLL----PFLESGKAIMIGLTTLNPYQSINMAI---RSR---CHLYEIKALSD 150

Query: 176 DFLEKVIVKMFA--DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGIT 231
             +E  I+      D  I +     A I++    S       ++ +++ +L    G  IT
Sbjct: 151 KDIEAAILNAIQYLDHDIHLTDDALAAIIRA---SNSEIRSALNLLESASLVVDDGQKIT 207

Query: 232 RSLAAEV 238
            ++  ++
Sbjct: 208 SNIIRKL 214


>gi|330836935|ref|YP_004411576.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM
           17374]
 gi|329748838|gb|AEC02194.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM
           17374]
          Length = 658

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 62/204 (30%), Gaps = 45/204 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++  + F         + +                     
Sbjct: 243 VLLVGPPGTGKTLLAKAVAGEAGVSFFHTSGSDFVEMFVGMGAARVRDLFEQGRKNAPCI 302

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQY---------------DSSLLMTARTFPVSWGVCL 155
           + ++++D +           N   +                   ++M A   P      L
Sbjct: 303 LFIDELDAVGRTRGGGLGGGNDEREQTLNQMLVEMDGFATTTGVIVMAATNRPDVLDPAL 362

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL--VFA 212
             L   R      V +  PD    E ++       Q+     L      R+ R+      
Sbjct: 363 --LRPGRFDRQVTVAL--PDVVEREAILRIHAKKIQLEPSVDLG-----RIARATPGSSG 413

Query: 213 EKLVDKMDNLAL--SRGMGITRSL 234
             L + ++  AL  +R   +T  +
Sbjct: 414 ADLANLINEAALFAARRKKLTVDM 437


>gi|330826232|ref|YP_004389535.1| AAA ATPase central domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311604|gb|AEB86019.1| AAA ATPase central domain protein [Alicycliphilus denitrificans
           K601]
          Length = 439

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 32/198 (16%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112
           IL GP G GK+ +A + ++   +   S                +A+S    L+  R  V 
Sbjct: 50  ILWGPPGVGKTTIARLMAEAFDAQFISISAVLGGVKDIRDAVQLAESAAGGLMPQRTIVF 109

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR   A V  +  
Sbjct: 110 VDEVHRFNKSQQDAFLPH---VESGLFTFVGATTENPSFEVNSA-LLSR---AAVYVLQP 162

Query: 173 PDDDFLEKVIVKMFADRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
              D L++++V+   D Q    I+ +    ++   +     A +L++ ++ L+++ G   
Sbjct: 163 LTSDDLKQIVVR-AQDIQALPAIENEALERLIAYAD---GDARRLLNTLETLSVTAGQAK 218

Query: 230 ---ITRSLAAEVLKETQQ 244
              IT +   +VL E  +
Sbjct: 219 VETITDAWLLQVLGERMR 236


>gi|329766718|ref|ZP_08258261.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329136973|gb|EGG41266.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 728

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 33/159 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK----P 110
           V+L GP G+GK+ LA   +++S++   S                 L  I  + R+     
Sbjct: 214 VLLYGPPGTGKTLLAKAVANESQAHFISISGPEIMSKFYGESEARLREIFKEAREKAPSI 273

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           + +++ID +                 Q+  +++ +      +++ A   P +     P L
Sbjct: 274 IFVDEIDSIAPKREEVTGEVERRVVSQMLSLMDGLEARGKVIVIAATNRPNAID---PAL 330

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               +    ++I +PD    + ++      R + +   +
Sbjct: 331 RRPGRFDREIEIKVPDKKGRKDIL--AIHSRNMPLSDDV 367



 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           R ++L GPSG+GK+ LA   + +S +   S     L
Sbjct: 485 RGILLHGPSGTGKTLLAKAVATQSEANFVSVRGPEL 520


>gi|323455953|gb|EGB11820.1| hypothetical protein AURANDRAFT_36060 [Aureococcus anophagefferens]
          Length = 571

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 40/170 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR-----------------------FSNIAKS 99
           P R  +L GP G GK+ L    + +                            F+   K 
Sbjct: 16  PPRGALLHGPPGCGKTTLLRAAAYECGCNVEVLNGGDVAAKKPGEAEEVLRAKFAAAEKG 75

Query: 100 LDSILIDTRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTF 147
                      +++++I+ +                 QL  +++ +      +++ A   
Sbjct: 76  GAPASRPAPSVIMIDEIECIAQKRDKADSEQDKRICAQLLTLMDGLKPASGVVVLAATGK 135

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           P      L     RL     V + +PD+    +++      R + +   +
Sbjct: 136 PNDLDPALRRFG-RLD--REVALEVPDEAARREIL--AVKTRGMSLAGDV 180


>gi|297734936|emb|CBI17170.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 21/182 (11%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPV--LLEDIDLL 119
           P + ++L GP GSGK+ +A   ++++ +  F  N  + +  +  ++   +    E+ +  
Sbjct: 196 PPKGILLYGPPGSGKTLIAKAVANETGAFFFCINGPEIMSKLAGESEGNLRKAFEEAEKN 255

Query: 120 DFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAATVVKISLPDD 175
             +     QL  +++ +      +++ A   P S     P L  R  +    + I +PD+
Sbjct: 256 APSIRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID---PALR-RFGRFDREIDIGVPDE 311

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAY---IVQRMER----SLVFAEKLVDKM-DNLALSRG 227
               +V+      + + +          I+  +ER    S  +    +  +    AL   
Sbjct: 312 VGRLEVL--RIHTKNMKLSDDAIQKEKGIIVDLERIAKDSHGYVGADLAALCTEAALQSI 369

Query: 228 MG 229
             
Sbjct: 370 RE 371



 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L +      +  + E  D  
Sbjct: 456 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVREIFDKA 512


>gi|190694814|gb|ACE88957.1| polyprotein [Sclerotinia sclerotiorum RNA virus L]
          Length = 1964

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 26/128 (20%)

Query: 48  AIEQAVRLIDSWPSWPSRVVI--LVGPSGSGKSC------------------LANIWSDK 87
           A   A R+++  P     +V+  +VGP GSGK+                   LA+ W   
Sbjct: 633 ATALAKRVLEHPPPGSLPIVLAAIVGPPGSGKTHGLRALVGNLDAVIVPTNQLADSWRAH 692

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147
           +  T    + + L     +  + +++++   L  +     H+I     +  +  +     
Sbjct: 693 APDTAVFTVERFLADPPAEPYRRLVVDECFKLAPS-----HLI-RALAHGKTCYIAGDPA 746

Query: 148 PVSWGVCL 155
              +   L
Sbjct: 747 QPRYEGSL 754


>gi|298243741|ref|ZP_06967548.1| signaling protein [Ktedonobacter racemifer DSM 44963]
 gi|297556795|gb|EFH90659.1| signaling protein [Ktedonobacter racemifer DSM 44963]
          Length = 199

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 22/147 (14%)

Query: 63  PSRVV-ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P R + +L GP+G+GKS  A      ++   F+        I  D  + V+ +D      
Sbjct: 18  PQRTLIVLCGPAGAGKSTFARNLVHANQHAGFAPTMI----ISSDYCRSVIFDDEASQQA 73

Query: 122 NDTQ--LFHII--NSIHQYDSSLLMTARTFPVSWGVC--LPDLCSRLKAATVVKISL--P 173
           N     LFH I    + Q  +++   A +  +SW     L +L  R    T + I    P
Sbjct: 74  NREAFDLFHFIIAKRMRQNRTTI---ADSTAISWDARRNLLELAHRYNYHTSLFIFNITP 130

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAY 200
           D      + ++    RQ  +   +  Y
Sbjct: 131 D------ICLRHEQQRQRRVGADVINY 151


>gi|125975232|ref|YP_001039142.1| IstB-like ATP-binding protein [Clostridium thermocellum ATCC 27405]
 gi|125715457|gb|ABN53949.1| IstB-like ATP-binding protein [Clostridium thermocellum ATCC 27405]
          Length = 241

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 29/147 (19%)

Query: 67  VILVGPSGSGKSCLANIW----SDKSRSTRFSNIAKSLDSILIDTRKPVL------LEDI 116
           +IL GP G GK+ LA        ++ R  RF   A  ++ +L    +  L      LE +
Sbjct: 96  LILYGPVGLGKTHLATAIGVEACNQGRHVRFFRTASLVNQLLDAKAEGSLKRFLKQLEKV 155

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS--- 160
           +LL  ++             LF +I+  ++   S+++T       W     D  L S   
Sbjct: 156 ELLICDEWGFIPFEREGSQLLFQVISDCYER-KSMIITTNLEFSKWNGIFYDEKLTSAII 214

Query: 161 -RLK-AATVVKISLPDDDFLEKVIVKM 185
            R+   + ++    P D  +  ++ K 
Sbjct: 215 DRIIHHSHLIVFDGPSDRLVNSLMRKQ 241


>gi|187933032|ref|YP_001885222.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B str.
           Eklund 17B]
 gi|238691635|sp|B2TMZ2|RUVB_CLOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187721185|gb|ACD22406.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B str.
           Eklund 17B]
          Length = 344

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 77/201 (38%), Gaps = 27/201 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +           +++           L+D D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLANIIAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEI-- 112

Query: 127 FHIINSIHQ-------YDSSL--LMTARTFPVSWGVCLPD------------LCS--RLK 163
            H +N   +        D +L  ++       S  + LP             L S  R +
Sbjct: 113 -HRLNRSVEEILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDR 171

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
              +  +   D+  L++++++  A     I ++ A  I  R   +   A +L+ ++ D  
Sbjct: 172 FGVLCAMEYYDETQLKEIVIRSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYS 231

Query: 223 ALSRGMGITRSLAAEVLKETQ 243
            +     I+   A + L+  +
Sbjct: 232 EVKSNKVISLKEARDALELLE 252


>gi|225432252|ref|XP_002271397.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297736845|emb|CBI26046.3| unnamed protein product [Vitis vinifera]
          Length = 423

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 66/201 (32%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++          
Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 262

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 +++ID +                  +  ++N +      D   ++ A       
Sbjct: 263 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  + S RL     ++   P +D   +++      R++ +   +    + R      
Sbjct: 323 DPAL--MRSGRLD--RKIEFPHPSEDARARILQ--IHSRKMNVHPDVNFEELARSTDDFN 376

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   L+     T
Sbjct: 377 GAQLKAVCVEAGMLALRRDAT 397


>gi|146415292|ref|XP_001483616.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 426

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++ +
Sbjct: 205 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRD 256


>gi|148550935|ref|YP_001260365.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|148503346|gb|ABQ71598.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii
           RW1]
          Length = 242

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 22/114 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSD---KSRSTR-----FSNIAKSLDSILIDTRKPVL--LE 114
           R ++LVG +G+GK+ LA   +    +S +          + +  +   I     +   L 
Sbjct: 99  RNIVLVGGTGTGKTHLAIAITANVVRSGARGRYFNTVDLVTRLEEEARIGKSGALAAQLS 158

Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +DL+  ++             LFH+I+ +++  +S+++T       W     D
Sbjct: 159 RLDLIVLDELGYLPFARSGGQLLFHLISKLYE-QTSVIITTNLAFGEWPTVFGD 211


>gi|170732290|ref|YP_001764237.1| recombination factor protein RarA [Burkholderia cenocepacia MC0-3]
 gi|169815532|gb|ACA90115.1| AAA ATPase central domain protein [Burkholderia cenocepacia MC0-3]
          Length = 436

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +   +
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLN 164

Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           DD + +++ +    A   +  D K    +V   +     A + ++ ++  
Sbjct: 165 DDEMRQLLKRAQEIALDGLAFDDKAIDTLVGYAD---GDARRFLNLLEQA 211


>gi|329944922|ref|ZP_08292949.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328529733|gb|EGF56629.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 476

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 24/172 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ +A + +D++    F  ++ +   +  D RK              T L
Sbjct: 95  IVLWGPPGCGKTTVARLLADRTG-LVFEQVSATFSGVA-DLRKVFAAAARRREIGQGTLL 152

Query: 127 F----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N           +  + +L+  T              L SR     V+ +  
Sbjct: 153 FVDEIHRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNGA---LLSR---CQVMVLRR 206

Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            D+  L +++ +  +   R + + ++    ++   +    +   +V+++   
Sbjct: 207 LDEVALTELLARAESLTGRSLALTEEARTALLSMADGDGRYLLGMVEQVLAA 258


>gi|326333625|ref|ZP_08199862.1| LigA [Nocardioidaceae bacterium Broad-1]
 gi|325948531|gb|EGD40634.1| LigA [Nocardioidaceae bacterium Broad-1]
          Length = 738

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 28/174 (16%)

Query: 55  LIDSWPSW----PSRVVILVGPSGSGKSCLANIW---SDKSRSTRFSNIAKSLDSILIDT 107
           LI++   W     S +  L GPSGSGK+     W    ++ R     + A     ++ + 
Sbjct: 213 LIEALGRWLQNTESNLFFLTGPSGSGKTIEIRDWTASQEQVRYISLRDGAVDYGDLVGED 272

Query: 108 RKPVLLEDIDLLDFNDTQ-------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           R P++++D DL+  +  +       L  + ++  +    ++++ R            L S
Sbjct: 273 RSPIVIDDFDLISSSAEEHGVTRPDLSELRSAFGRGGRFVVISKRNLQTERDELAEQLRS 332

Query: 161 --RL-----KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
             RL     ++A VV++       +  +      +R      +    +   MER
Sbjct: 333 PARLEDLGVESAVVVRVEPISPVEVRAL----SEERG---GDEKLRNLAAEMER 379


>gi|229035242|ref|ZP_04189177.1| Transposition helper protein, IS21 [Bacillus cereus AH1271]
 gi|228728054|gb|EEL79095.1| Transposition helper protein, IS21 [Bacillus cereus AH1271]
          Length = 253

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 39/140 (27%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------- 110
           IL+GP G GK+ LA  ++ ++ +  ++ +  S D ++   RK                  
Sbjct: 102 ILLGPPGVGKTHLAVSFAIEAITQGYTALFLSADDLVAQCRKANDKGTLQRLVNRWSRPD 161

Query: 111 -VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            ++++++    F++      F +++  ++  + +L T+               S L+   
Sbjct: 162 VLIVDEVGYFPFDELTANVFFQVVSKRYEQGAMIL-TSN-------------KSYLEWGK 207

Query: 167 VVKISLPDDDFLEKVIVKMF 186
           V      DD     ++ ++ 
Sbjct: 208 VFG----DDVLATAILDRLL 223


>gi|225559886|gb|EEH08168.1| DNA replication ATPase [Ajellomyces capsulatus G186AR]
 gi|225559936|gb|EEH08218.1| DNA replication ATPase [Ajellomyces capsulatus G186AR]
          Length = 547

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 93/265 (35%), Gaps = 46/265 (17%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDL----LVHSAIEQAVRLID 57
           N  +ED S  V   + ++  +N       +       S DD+    LV  +      LI+
Sbjct: 106 NFSEEDSSLVVKRSRTSNALENAA---PLAERMRPR-SLDDVYGQELVGPS-GVLRGLIE 160

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------------IAKSLDSIL 104
                    +IL G +G+GK+ +A + +    S                   +++ + + 
Sbjct: 161 QDR---VPSMILWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVAECKKLFSEAKNELS 217

Query: 105 IDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +  RK ++  ++I     +   +F       +     L+ A T   S+ V    L SR  
Sbjct: 218 LSGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENPSFKVQNA-LLSR-- 271

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVD 217
                 ++   D+ +  ++ +              +D +L  Y+    +     +  L++
Sbjct: 272 -CRTFTLAKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLE 330

Query: 218 -KMD---NLALSR---GMGITRSLA 235
             MD      ++R      +TR+L 
Sbjct: 331 LAMDLSRREGMTREDLKKSLTRTLV 355


>gi|153953934|ref|YP_001394699.1| recombination factor protein RarA [Clostridium kluyveri DSM 555]
 gi|219854548|ref|YP_002471670.1| hypothetical protein CKR_1205 [Clostridium kluyveri NBRC 12016]
 gi|146346815|gb|EDK33351.1| Predicted helicase subunit of Holliday junction resolvase
           [Clostridium kluyveri DSM 555]
 gi|219568272|dbj|BAH06256.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 437

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 68/176 (38%), Gaps = 30/176 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------------LIDTRKPVL 112
           VI  GP G GK+ LA I ++ +++  +   A +  +                   +  + 
Sbjct: 55  VIFYGPPGVGKTTLARIIANTTKANFYELSAVNSGTADVKKIIKEAENNLKFYSKKTILF 114

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++I   +        ++N++ +    +L+   T    + V    L SR   + + ++  
Sbjct: 115 IDEIHRFNKAQQD--SVLNAV-EKGIIILIGVTTENPYFEVNNA-LLSR---SMIFRLEH 167

Query: 173 PDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             ++ ++K +       K F+  +I +D K+  Y       S     K ++ +D  
Sbjct: 168 LSENNVKKALKNAIESPKGFSYLKIEVDPKVFDYFALH---SGGDIRKALNALDMA 220


>gi|307825885|ref|ZP_07656100.1| AAA ATPase central domain protein [Methylobacter tundripaludum
           SV96]
 gi|307733004|gb|EFO03866.1| AAA ATPase central domain protein [Methylobacter tundripaludum
           SV96]
          Length = 435

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 33/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA + +  S +     S +   +  I     +    + I L     T
Sbjct: 47  MIFWGPPGTGKTTLARLIAQHSDAEFMPISAVLSGVKEIRAAVAEA---KKIQLEQHRRT 103

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T      +       L SR   A V  +
Sbjct: 104 ILFVDEVHRFNKSQQDAFLPHVEDGTVYFVGATTENPSFALNNA---LLSR---ARVYVL 157

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD-KMDNL 222
           +    D L  VI K   D  R +      +   +     Q  +        L++  ++  
Sbjct: 158 NALTADDLLAVIDKALTDKVRGLGGLAIEMADDIKQQFAQAADGDARRLLNLLEIAVELA 217

Query: 223 ALSRGMGITRSLAAEVL 239
           A   G  +  ++A EVL
Sbjct: 218 AAKGGQAVNEAIAKEVL 234


>gi|242043694|ref|XP_002459718.1| hypothetical protein SORBIDRAFT_02g009310 [Sorghum bicolor]
 gi|241923095|gb|EER96239.1| hypothetical protein SORBIDRAFT_02g009310 [Sorghum bicolor]
          Length = 615

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVR--LIDSWPSW--PSRVVILVGPSGSGKSCLANI 83
           L       + ++ +DL V ++  +A    +ID    +  P  V+ L+GPSG GK+ L + 
Sbjct: 62  LPEEASHEVFLTWEDLSVTASSGKAKAAVIIDKISGYARPGEVLALMGPSGCGKTTLLDA 121

Query: 84  WSDKSR 89
            + +  
Sbjct: 122 LAGRLG 127


>gi|171689492|ref|XP_001909686.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944708|emb|CAP70819.1| unnamed protein product [Podospora anserina S mat+]
          Length = 799

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 39/166 (23%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDT 107
              V+L GPSG GK+ LA+  +  + +      A S+                D  +   
Sbjct: 229 GNGVLLHGPSGCGKTTLAHAVAGSAGAAFIPISAPSIVGGTSGESEKNIRDVFDEAIRIA 288

Query: 108 RKPVLLEDIDLLDFNDTQ---------LFHIIN---SIHQY----DSSLLMTARTFPVSW 151
              +  ++ID +               +  I+N    I +      + +++ A   P S 
Sbjct: 289 PCLIFFDEIDAIAGKRESANKGMEGRIVAEIMNGMDRIKRNTPLGKNVVVLAATNRPESL 348

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                D   R +  + V + +P +   E+++  +  D  + + + +
Sbjct: 349 -----DPAIRRRFGSEVDMGMPSERAREQILRSLSRD--LNLAEDV 387



 Score = 37.8 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+  ++L GP G GK+ +A   +++S++   S
Sbjct: 526 PAAGILLWGPPGCGKTLVAKAVANESKANFIS 557


>gi|111021572|ref|YP_704544.1| ATPase [Rhodococcus jostii RHA1]
 gi|110821102|gb|ABG96386.1| possible ATPase [Rhodococcus jostii RHA1]
          Length = 420

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 34/164 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNIAKSLDSILIDTRKP- 110
           P R V+L GP G+GK+  A   + +             +   + +A  L        +  
Sbjct: 195 PPRAVVLFGPPGTGKTTFARAIASRLGWPFVELFPSRLAAGENGLAAGLGEAFTSMGELE 254

Query: 111 ---VLLEDIDLLDFND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
              V +++++ +               +L   I    +    LL+ A     +       
Sbjct: 255 HVVVFIDEVEEVAARRRPGSQSVGVVNELLKSIVHFRERGGRLLVCATNSVRALDDAF-- 312

Query: 158 LCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
               L+      V+ I  PD +    +  +   + Q+ +   +A
Sbjct: 313 ----LRHGRFDYVLPIGAPDAEARHALWERYLGNEQVDVSALVA 352


>gi|239814294|ref|YP_002943204.1| recombination factor protein RarA [Variovorax paradoxus S110]
 gi|239800871|gb|ACS17938.1| AAA ATPase central domain protein [Variovorax paradoxus S110]
          Length = 430

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 26/176 (14%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112
           IL GP G+GK+ +A + +D   +   S                 A +    L   R  V 
Sbjct: 47  ILWGPPGTGKTTIARLMADAFDAQFLSISAVLGGVKDIRDAVERATAARDGLEQRRTIVF 106

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR   A V  +  
Sbjct: 107 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQP 159

Query: 173 PDDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             +  L++++ K  A + +  I+      +V   +     A +L++ ++ LA++  
Sbjct: 160 LTEADLKQIVAKAQAIQAVPGIEDTAIDRLVAYAD---GDARRLLNTLETLAVAAR 212


>gi|161076488|ref|NP_001097250.1| TER94, isoform D [Drosophila melanogaster]
 gi|157400264|gb|ABV53746.1| TER94, isoform D [Drosophila melanogaster]
          Length = 759

 Score = 44.0 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 192 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 251

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 252 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 311

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 312 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 364

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 365 DLASLC------SEAALQQIREKMD 383



 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 465 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 521


>gi|289625405|ref|ZP_06458359.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649312|ref|ZP_06480655.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487530|ref|ZP_07005572.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157914|gb|EFH98992.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323768|gb|EFW79852.1| recombination factor protein RarA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327909|gb|EFW83914.1| recombination factor protein RarA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866858|gb|EGH01567.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330889679|gb|EGH22340.1| recombination factor protein RarA [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330987921|gb|EGH86024.1| recombination factor protein RarA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 440

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      RQ+ +  +    ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVHRALTEERGLGKRQLTLSDEGFTILMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDVELLQSLLGDSRR 239


>gi|255659708|ref|ZP_05405117.1| replication-associated recombination protein A [Mitsuokella
           multacida DSM 20544]
 gi|260848282|gb|EEX68289.1| replication-associated recombination protein A [Mitsuokella
           multacida DSM 20544]
          Length = 462

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 82/228 (35%), Gaps = 45/228 (19%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--- 91
              + R   L         R+I+         +I  GP G+GK+ LA + +  + S    
Sbjct: 58  QEAVGRGHFL--------RRMIEMDQ---IPSIIFYGPPGTGKTTLAQMIAAMTDSAFEK 106

Query: 92  --RFSNIAKSLDSILIDTRKP---------VLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140
               S     L  I+ +  +          V +++I   + +   +        +    +
Sbjct: 107 LNAVSAGISDLRRIVKEADEARRYYQRRTIVFIDEIHRFNKSQQDVLLPY---VEDGRLI 163

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQI-----FI 193
           L+ A T    + V    L SR++   +V++    D  L +V+ +   D  R +      +
Sbjct: 164 LIGATTENPFFEVNHA-LLSRVR---IVRLYQLTDAQLVEVLRRALKDEERGLGGQHVEV 219

Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLAL---SRGMGITRSLAAEV 238
             ++   ++   + +   A   ++ ++  A    + G  +T  +  E+
Sbjct: 220 PDEV---LLAMAQIAGGDARMALNLLEGAAAMLPTTGGTVTLDMLEEI 264


>gi|325846375|ref|ZP_08169344.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481559|gb|EGC84599.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 678

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268

Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151
           V +++ID +            D  +  L  ++N        +  +L++A   P       
Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLSATNRPEILDPAL 328

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 329 TRPGRFDRRVQVELPDLKGR 348


>gi|302872103|ref|YP_003840739.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574962|gb|ADL42753.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 441

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 25/139 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G+GK+ +A++ ++ +  T F  I  ++  +    +   ++E+   ++F+ T  
Sbjct: 55  IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEA-KIEFSQTGK 109

Query: 126 ---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
              LF    H  N +         +    +L+ A T    + V    L SR   + V ++
Sbjct: 110 KTILFIDEIHRFNKLQQDALLPSVEEGIIILIGATTENPFYEVNKA-LVSR---SLVFEL 165

Query: 171 SLPDDDFLEKVIVKMFADR 189
               ++ + K+I +  +D+
Sbjct: 166 FPLKEEDILKIIERAISDK 184


>gi|256545930|ref|ZP_05473285.1| cell division protease FtsH family protein 3 [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398352|gb|EEU11974.1| cell division protease FtsH family protein 3 [Anaerococcus
           vaginalis ATCC 51170]
          Length = 695

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268

Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151
           V +++ID +            D  +  L  ++N        +  +L++A   P       
Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLSATNRPEILDPAL 328

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 329 TRPGRFDRRVQVELPDLKGR 348


>gi|212697413|ref|ZP_03305541.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675605|gb|EEB35212.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 677

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268

Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151
           V +++ID +            D  +  L  ++N        +  +L++A   P       
Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLSATNRPEILDPAL 328

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 329 TRPGRFDRRVQVELPDLKGR 348


>gi|146307409|ref|YP_001187874.1| recombination factor protein RarA [Pseudomonas mendocina ymp]
 gi|145575610|gb|ABP85142.1| Recombination protein MgsA [Pseudomonas mendocina ymp]
          Length = 440

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  + +  F  I+  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVTDAH-FETISAVLSGVKEIRQAVEVAQQH 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  + K++ +   D      R + +  +    ++   +       +L+
Sbjct: 155 --ARVYVLKSLDEAAMRKLVNRALTDPKGLGERHLSLPDEAFQILLAAAD---GDGRRLL 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N A L+  G  I   L   +L ++++
Sbjct: 210 NFLENAADLAEDGGEIGVELLQNLLGDSRR 239


>gi|115638829|ref|XP_799095.2| PREDICTED: similar to proteasome 26S ATPase subunit 3 variant
           [Strongylocentrotus purpuratus]
 gi|115963310|ref|XP_001191026.1| PREDICTED: similar to proteasome 26S ATPase subunit 3 variant
           [Strongylocentrotus purpuratus]
          Length = 278

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 70/201 (34%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 58  PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 117

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +      +   ++ A       
Sbjct: 118 LPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSSEEIKVIAATNRVDIL 177

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++   P+++   +++      R++ +   +    + R      
Sbjct: 178 DPAL--LRSGRLD--RKIEFPAPNEEARARIMQ--IHSRKMNVGADVNFEELARCTDDFN 231

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++   G T
Sbjct: 232 GAQCKAVCVEAGMIALRRGAT 252


>gi|147920402|ref|YP_685823.1| proteasome-activating nucleotidase [uncultured methanogenic
           archaeon RC-I]
 gi|110621219|emb|CAJ36497.1| 26S proteasome regulatory subunit (proteasome-activating
           nucleotidase) [uncultured methanogenic archaeon RC-I]
          Length = 410

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G+GK+ LA   + ++ +T        L    I     ++ +
Sbjct: 186 PPRGVLLYGPPGTGKTLLAKAVAHQANATFIRMSGSELVHKFIGEGAQLVRD 237


>gi|15920578|ref|NP_376247.1| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7]
 gi|15621361|dbj|BAB65356.1| 747aa long hypothetical SAV protein [Sulfolobus tokodaii str. 7]
          Length = 747

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + ++L GP G+GK+ LA   +++  ++ ++               + L  I  + +  
Sbjct: 212 PPKGILLYGPPGNGKTLLARALANEVGASFYTINGPEIMSKFYGESEQRLREIFEEAQKN 271

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ I      +++ A   P +    
Sbjct: 272 APAIIFIDEIDSIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDA---V 328

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I  PD    ++++      R + + + +
Sbjct: 329 DPALRRPGRFDREIEIRPPDTKGRKEILQVH--TRNMPLAEDV 369



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 487 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 518


>gi|225568599|ref|ZP_03777624.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM
           15053]
 gi|225162527|gb|EEG75146.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM
           15053]
          Length = 438

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 30/158 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---ND 123
           +I  GP G+GK+ LA + ++ + +       +   ++        +++    L       
Sbjct: 55  IIFYGPPGTGKTTLAKVIANTTSAE----FTQINATVAGKKDMEEVVKHAKELQGMYQKR 110

Query: 124 TQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N           +  + +L+ A T    + V    L SR   +++ ++ 
Sbjct: 111 TILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SSIFELH 166

Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIV 202
             D + +  +I +   D        Q  I++    ++ 
Sbjct: 167 PLDKEDIRTLIRRALTDVEKGMGSYQAVIEEDALEFLA 204


>gi|213406089|ref|XP_002173816.1| chromosome transmission fidelity protein [Schizosaccharomyces
           japonicus yFS275]
 gi|212001863|gb|EEB07523.1| chromosome transmission fidelity protein [Schizosaccharomyces
           japonicus yFS275]
          Length = 825

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
           RV++L GP GSGK+ LA++ + ++        A    + 
Sbjct: 282 RVLLLTGPPGSGKTTLAHVIARQAGYNVVEVNASDDRTA 320


>gi|115476404|ref|NP_001061798.1| Os08g0413000 [Oryza sativa Japonica Group]
 gi|37806195|dbj|BAC99698.1| putative cell division cycle protein [Oryza sativa Japonica Group]
 gi|113623767|dbj|BAF23712.1| Os08g0413000 [Oryza sativa Japonica Group]
 gi|125603399|gb|EAZ42724.1| hypothetical protein OsJ_27296 [Oryza sativa Japonica Group]
          Length = 848

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P + ++L GP G+GK+ LA   + +S +         + S +    +             
Sbjct: 248 PPKGILLYGPPGTGKTLLARAIAAESGAHFVVVNGPEIMSGMPGESEANLRAVFAEADAA 307

Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +  +              QL  +++ +      +++ A   P S    
Sbjct: 308 APSIVFMDEIDSIAPSREKAHGEVERRVVSQLLTLMDGLRPRAQVIVIGATNRPNSLDPA 367

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+  L ++ +     + + +   +
Sbjct: 368 LR----RFGRFDRELDIGVPDE--LGRLEILRIHTKNMPLSDDV 405


>gi|556560|dbj|BAA04614.1| rice homologue of Tat binding protein [Oryza sativa Japonica Group]
          Length = 429

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 209 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 260


>gi|327480897|gb|AEA84207.1| recombination factor protein RarA [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 28/208 (13%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        ++  GP G GK+ LA + +  S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMVFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEIAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMF-ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +     R      + + ++    ++   +        L+
Sbjct: 155 --ARVYVLKSLDEAALRKLVTRALTEHRGLGELHLTLPEESFQMLLAAADGDGRRLLNLL 212

Query: 217 DKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +   +LA  +G  I+  L  ++L ++++
Sbjct: 213 ENASDLA-EQGGVISTDLLQDLLGDSRR 239


>gi|307183660|gb|EFN70363.1| ATPase WRNIP1 [Camponotus floridanus]
          Length = 554

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 29/171 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +IL GP G GK+ LAN+ +     D SR  R+  ++ ++  +  + ++ + +      
Sbjct: 147 PNMILWGPPGCGKTSLANVIAHMCKNDTSRKLRYVKLSAAMAGV-QEVKEVISVAANHAK 205

Query: 120 DFNDTQLF----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
               T +F    H  N   Q                 V LP + S            P  
Sbjct: 206 FAQQTIVFMDEIHRFNKTQQD----------------VFLPHVESGTITLIGATTENPSF 249

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
                ++ +    R I + K   A +V  ++R+++  E ++   D   L  
Sbjct: 250 SLNSALLSRC---RVIVLHKLSVANLVSILKRAVISLEGIIHMSDKSTLQS 297


>gi|148642414|ref|YP_001272927.1| proteasome-activating nucleotidase [Methanobrevibacter smithii ATCC
           35061]
 gi|222446088|ref|ZP_03608603.1| hypothetical protein METSMIALI_01737 [Methanobrevibacter smithii
           DSM 2375]
 gi|288869526|ref|ZP_05974789.2| proteasome-activating nucleotidase [Methanobrevibacter smithii DSM
           2374]
 gi|148551431|gb|ABQ86559.1| ATP-dependent 26S proteasome regulatory subunit, RPT1
           [Methanobrevibacter smithii ATCC 35061]
 gi|222435653|gb|EEE42818.1| hypothetical protein METSMIALI_01737 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861736|gb|EFC94034.1| proteasome-activating nucleotidase [Methanobrevibacter smithii DSM
           2374]
          Length = 420

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + ++L GP G+GK+ LA   ++++ +T    +A       I     ++ E  +L 
Sbjct: 194 PPKGILLYGPPGTGKTLLAKAVANETNATFIKIVASEFVKKYIGEGARLVREVFELA 250


>gi|167621681|ref|YP_001672189.1| transposase [Caulobacter sp. K31]
 gi|167351804|gb|ABZ74530.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31]
          Length = 269

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 30/149 (20%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-------- 81
           F F            V  A   A+   DSW    + +++  GP G GKS LA        
Sbjct: 80  FDFDAVPT-------VSKAQVMALAAGDSWLDNGANLLM-FGPPGGGKSHLAAALGLALV 131

Query: 82  ----NIWSDKSR------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFH 128
                ++  ++        T   ++        +D    ++L+D+  +  +  +   LF 
Sbjct: 132 ENGWRVFFTRTTDLVQRLQTARRDLQLEAAIAKLDKYHLLILDDLAYVTKDQAETSVLFE 191

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +I S      SLL+TA      WG   PD
Sbjct: 192 LI-SARYERRSLLITANQPFGEWGRIFPD 219


>gi|23197864|gb|AAN15459.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]
          Length = 424

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 255


>gi|330801893|ref|XP_003288957.1| 26S proteasome ATPase 3 subunit [Dictyostelium purpureum]
 gi|325080988|gb|EGC34521.1| 26S proteasome ATPase 3 subunit [Dictyostelium purpureum]
          Length = 410

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++ ST        L  + I     ++          
Sbjct: 189 PPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 248

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +       +  ++ A       
Sbjct: 249 GPTIIFIDELDAIGTKRFDSEISGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDIL 308

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  LP+++    ++      R++ +   +    + R      
Sbjct: 309 DPAL--LRSGRLD--RKIEFPLPNEEARAHILQ--IHSRKMNVHPDVNFEELARSTEDFN 362

Query: 211 FAE 213
            A+
Sbjct: 363 GAQ 365


>gi|318040549|ref|ZP_07972505.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CB0101]
          Length = 745

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I +  +R+   S  A       + +        ++      + L
Sbjct: 70  LILYGPPGVGKTTLARIIAASTRAHFSSLNAVLAGVKDLRSEVDEARRRLEQHGLR-SFL 128

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  +  L+ A T    + V    L SR   + + ++    
Sbjct: 129 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLQPLQ 184

Query: 175 DDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
              L +++ +  +       DRQ+ I  + AA++V             ++
Sbjct: 185 PQHLHQLLQRALSDSERGYGDRQVVISNEAAAHLVDVAGGDARSLLNALE 234


>gi|284007597|emb|CBA73185.1| recombination factor protein RarA [Arsenophonus nasoniae]
          Length = 455

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 36/202 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP+G+GK+ LA I    + +     S +   +  I    R+ + +   +      T
Sbjct: 61  MILWGPAGTGKTTLAEIIGHYADAAIEKISAVTSGIKEI----RESIEIARQNRQLGRRT 116

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 117 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNSA---LLSR---ARVYLL 170

Query: 171 SLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
               ++ +  V+ +  AD Q       I +       I Q +      A  L++ M D  
Sbjct: 171 KSLANEEIAMVLQQAMADSQRGYGGQKIILPDDTRDMIAQLVNGDARRALNLLEMMVDMA 230

Query: 223 ALSRGMGITRSLAAEVLKETQQ 244
            +       R LA  +LK+   
Sbjct: 231 EIDDKD--QRILAVNLLKDVSG 250


>gi|157132226|ref|XP_001662523.1| spermatogenesis associated factor [Aedes aegypti]
 gi|108871250|gb|EAT35475.1| spermatogenesis associated factor [Aedes aegypti]
          Length = 720

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +     
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKK 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + ++++D +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHSKNMKLADDVDLEQI----AAESHGHVGA 406

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 407 DLASLC------SEAALQQIREKMD 425



 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|306823257|ref|ZP_07456633.1| replication-associated recombination protein A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801882|ref|ZP_07695997.1| recombination factor protein RarA [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553889|gb|EFM41800.1| replication-associated recombination protein A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221438|gb|EFO77735.1| recombination factor protein RarA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 458

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 35/179 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ LA I + +S          ++  K +  +L      ++ E       
Sbjct: 62  IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLKRAHDRLVAE------G 115

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ V  P L SR   + VVK
Sbjct: 116 RETVLFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVK 171

Query: 170 ISLPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   + D L  +I +   D R +     I       I+ RM  +   A K +  ++  A
Sbjct: 172 LESLEPDDLRTLINRAVEDERGLNNEVRIRDDAVDEII-RM--ASGDARKTLTILEAAA 227


>gi|302658374|ref|XP_003020891.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517]
 gi|291184761|gb|EFE40273.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517]
          Length = 551

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95
                 LI+         +IL G +G+GK+ LA + +    S                  
Sbjct: 163 NGVLRGLIERDR---VPSMILWGSAGTGKTTLARVIASMVGSRFVEINSTSSGVAECKKL 219

Query: 96  IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            A++ + + +  RK ++  ++I     +   +F       +     L+ A T   S+ V 
Sbjct: 220 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 276

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208
              L SR        ++   ++ +  ++ +              +D +L  Y+    +  
Sbjct: 277 NA-LLSR---CRTFTLAKLTEENICAILNRALRLEGPNYSPSALVDDELIKYLAAFADGD 332

Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235
              A  L++  MD      +++      +TR+L 
Sbjct: 333 ARTALNLLELAMDLSQRENMTKDELKKSLTRTLV 366


>gi|302498881|ref|XP_003011437.1| hypothetical protein ARB_02287 [Arthroderma benhamiae CBS 112371]
 gi|291174988|gb|EFE30797.1| hypothetical protein ARB_02287 [Arthroderma benhamiae CBS 112371]
          Length = 551

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95
                 LI+         +IL G +G+GK+ LA + +    S                  
Sbjct: 163 NGVLRGLIERDR---VPSMILWGSAGTGKTTLARVIASMVGSRFVEINSTSSGVAECKKL 219

Query: 96  IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            A++ + + +  RK ++  ++I     +   +F       +     L+ A T   S+ V 
Sbjct: 220 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 276

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208
              L SR        ++   ++ +  ++ +              +D +L  Y+    +  
Sbjct: 277 NA-LLSR---CRTFTLAKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGD 332

Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235
              A  L++  MD      +++      +TR+L 
Sbjct: 333 ARTALNLLELAMDLSQRENMTKDELKKSLTRTLV 366


>gi|258420199|ref|ZP_05683154.1| recombination protein MgsA [Staphylococcus aureus A9719]
 gi|257843910|gb|EEV68304.1| recombination protein MgsA [Staphylococcus aureus A9719]
          Length = 424

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 72/201 (35%), Gaps = 40/201 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S  ++         +    ++   ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKM-------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           +D+ + + + +            Q  ID+    Y   +   S       ++ ++   LS 
Sbjct: 152 NDEDVRQALTRAIEYDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRNALNALELAVLSA 208

Query: 227 G------MGITRSLAAEVLKE 241
                    +T   A + L++
Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229


>gi|15230005|ref|NP_187204.1| RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin
           binding [Arabidopsis thaliana]
 gi|297829080|ref|XP_002882422.1| regulatory particle triple-a 5A [Arabidopsis lyrata subsp. lyrata]
 gi|75337114|sp|Q9SEI2|PS6AA_ARATH RecName: Full=26S protease regulatory subunit 6A homolog A;
           AltName: Full=26S proteasome AAA-ATPase subunit RPT5a;
           AltName: Full=Proteasome 26S subunit 6A homolog A;
           AltName: Full=Regulatory particle triple-A ATPase
           subunit 5a; AltName: Full=Tat-binding protein 1 homolog
           A; Short=TBP-1 homolog A
 gi|6652886|gb|AAF22525.1|AF123394_1 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]
 gi|7596759|gb|AAF64530.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]
 gi|17065258|gb|AAL32783.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]
 gi|297328262|gb|EFH58681.1| regulatory particle triple-a 5A [Arabidopsis lyrata subsp. lyrata]
 gi|332640733|gb|AEE74254.1| regulatory particle triple-A ATPase 5A [Arabidopsis thaliana]
          Length = 424

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 255


>gi|3024434|sp|O23894|PRS6A_BRACM RecName: Full=26S protease regulatory subunit 6A homolog; AltName:
           Full=Tat-binding protein homolog 1; Short=TBP-1
 gi|2564337|dbj|BAA22951.1| Tat binding protein 1 [Brassica rapa]
          Length = 424

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 255


>gi|327398424|ref|YP_004339293.1| Holliday junction ATP-dependent DNA helicase ruvB [Hippea maritima
           DSM 10411]
 gi|327181053|gb|AEA33234.1| Holliday junction ATP-dependent DNA helicase ruvB [Hippea maritima
           DSM 10411]
          Length = 322

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 69/200 (34%), Gaps = 31/200 (15%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHI 129
            GP G GK+ LANI + +  +   +    +++ +         L + D+L  ++    H 
Sbjct: 48  YGPPGLGKTTLANIVAKQMNANIITTSGPAVEKVGDIAAILTNLNEKDILFIDEI---HR 104

Query: 130 INSIHQ-------YDSSLLMTARTFP--VSWGVCLPD------------LCS--RLKAAT 166
           +N   +        D  L +     P   +  + LP             L S  R +   
Sbjct: 105 LNRAVEETLYSALEDFKLDIIVGQGPGARTIRIDLPHFTLIGATTRIGLLTSPLRDRFGI 164

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDKMDNLA 223
           ++++       L +++ +  +   + I++  A  I +R     R      + V  +    
Sbjct: 165 ILRLDFYSAKDLTEIVKRSASILGLDIEEDAANLIAERSRGTPRIANKLLRRVRDLSQ-- 222

Query: 224 LSRGMGITRSLAAEVLKETQ 243
           +     I    A + L   +
Sbjct: 223 IESKDSIDVETAKKALSMLE 242


>gi|283455715|ref|YP_003360279.1| AAA family ATPase [Bifidobacterium dentium Bd1]
 gi|283102349|gb|ADB09455.1| AAA family ATPase [Bifidobacterium dentium Bd1]
          Length = 467

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 31/177 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ LA I + +S          ++  K +  +L      ++ E  + + F
Sbjct: 71  IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLKRAHDRLVAEGKETVLF 130

Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            D     +         +LL          + A T   S+ V  P L SR   + VVK+ 
Sbjct: 131 IDE----VHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVKLE 182

Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             + D L  +I +   D R +     I       I+ RM  +   A K +  ++  A
Sbjct: 183 SLEPDDLRTLINRAVEDERGLNNEVRIRDDAVDEII-RM--ASGDARKTLTILEAAA 236


>gi|259502247|ref|ZP_05745149.1| macrolide ABC superfamily ATP binding cassette transporter,
           ABC/permease protein [Lactobacillus antri DSM 16041]
 gi|259169865|gb|EEW54360.1| macrolide ABC superfamily ATP binding cassette transporter,
           ABC/permease protein [Lactobacillus antri DSM 16041]
          Length = 251

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 16/106 (15%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V ++G SG+GKS L NI +   ++T  S +    D   +           D   F    
Sbjct: 36  YVAIMGESGAGKSTLLNIIATLDKATNGSAVLNGQDLGELGKD--------DAARFRREH 87

Query: 126 L------FHIINSIHQYDS-SL-LMTARTFPVSWGVCLPDLCSRLK 163
           L      F+++NS+   D+  L L+ A+T P      L  L SRL+
Sbjct: 88  LGFVFQRFNLLNSLSNRDNIYLPLVLAKTKPAEMERRLKPLASRLR 133


>gi|206891135|ref|YP_002249330.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743073|gb|ACI22130.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 414

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 22/175 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA I ++K+++      A +L+   I  +  +  + +       T L
Sbjct: 54  LILYGPPGTGKTALARIIANKTKAYFQWLNATTLNIEEIRKQVSLAKQRLSR--GEKTIL 111

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H +N I         +  + +L+ A      + +    L SR   + V ++    
Sbjct: 112 FIDEIHRLNRISQDALLPDIEEGTIILIGATIENPFFYLNSA-LLSR---SHVFELKPLT 167

Query: 175 DDFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225
           +  +  ++ +   D  R    +  ++ +  +  + +S    A K +  ++   L+
Sbjct: 168 EQEIITILKRAIVDTERGFGSLKVEITSEALSHLAKSSDGDARKALSALEIAVLT 222


>gi|171743312|ref|ZP_02919119.1| hypothetical protein BIFDEN_02443 [Bifidobacterium dentium ATCC
           27678]
 gi|171278926|gb|EDT46587.1| hypothetical protein BIFDEN_02443 [Bifidobacterium dentium ATCC
           27678]
          Length = 458

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 31/177 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ LA I + +S          ++  K +  +L      ++ E  + + F
Sbjct: 62  IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLKRAHDRLVAEGKETVLF 121

Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            D     +         +LL          + A T   S+ V  P L SR   + VVK+ 
Sbjct: 122 IDE----VHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVKLE 173

Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             + D L  +I +   D R +     I       I+ RM  +   A K +  ++  A
Sbjct: 174 SLEPDDLRTLINRAVEDERGLNNEVRIRDDAVDEII-RM--ASGDARKTLTILEAAA 227


>gi|308807062|ref|XP_003080842.1| FTSH1_SYNY3 Cell division protein ftsH homolog 1 dbj|BAA10230.1|
           cell division prot (ISS) [Ostreococcus tauri]
 gi|116059303|emb|CAL55010.1| FTSH1_SYNY3 Cell division protein ftsH homolog 1 dbj|BAA10230.1|
           cell division prot (ISS) [Ostreococcus tauri]
          Length = 891

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G GK+ LA   + ++ +T FS  A     + +      + +
Sbjct: 443 VLLTGPPGCGKTLLARAVAGEAGATFFSLAASEFVEMFVGVGAARVRD 490


>gi|4574740|gb|AAD24194.1|AF134402_1 Tat-binding protein-1 [Drosophila melanogaster]
          Length = 431

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 212 PPKGVILYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 263


>gi|115449297|ref|NP_001048428.1| Os02g0803700 [Oryza sativa Japonica Group]
 gi|109940121|sp|P46465|PRS6A_ORYSJ RecName: Full=26S protease regulatory subunit 6A homolog; AltName:
           Full=Tat-binding protein homolog 1; Short=TBP-1
 gi|17297989|dbj|BAB78492.1| 26S proteasome regulatory particle triple-A ATPase subunit5a [Oryza
           sativa Japonica Group]
 gi|51090590|dbj|BAD36042.1| 26S proteasome regulatory particle triple-A ATPase subunit5a [Oryza
           sativa Japonica Group]
 gi|113537959|dbj|BAF10342.1| Os02g0803700 [Oryza sativa Japonica Group]
 gi|215678901|dbj|BAG96331.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 429

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 209 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 260


>gi|251792120|ref|YP_003006840.1| recombination factor protein RarA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533507|gb|ACS96753.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 446

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 81/202 (40%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +I  GP G+GK+ LA I + +  +   R S +   +  I           L   R  + +
Sbjct: 53  MIFWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIRKAIEKAKQNKLAGLRTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSR---ARVYILK 163

Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223
                 +E+V+ +   D+       ++ + + L + + + +      A   ++ M D  A
Sbjct: 164 PLSTQEIERVLQQAIDDQENGLGKVRLDLQENLLSLLAEYVNGDARLALNCLEMMVDMAA 223

Query: 224 LSRGMGI-TRSLAAEVLKETQQ 244
            S+   I  R+L  EVL E Q 
Sbjct: 224 ESKNGKILDRTLLTEVLGERQA 245


>gi|156098430|ref|XP_001615247.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148804121|gb|EDL45520.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 677

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 37/173 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAK--------------SLDSILIDTRKPVL 112
           +IL GP GSGKS L N+  +K+ +   S                   ++  L   +  + 
Sbjct: 245 LILCGPPGSGKSSLVNVIKNKTNNLFISLFHLNNLNNELRKIYDQSVINYKLSKKKTILC 304

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR----------- 161
           ++DI+ L+ N  +   +I  + +    LL T    P    +    L SR           
Sbjct: 305 IKDINRLNKNQQENLLLI--LKKGYFYLLATCLFNP--MNILNASLSSRCLYLYLNPYDK 360

Query: 162 LKAATVVK--ISLPD----DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
           ++ A ++K  I+  D    D+ L  ++     D ++ I   +  + ++ MER 
Sbjct: 361 IELALIIKRIINKLDIDIEDNALNIIMNHSCGDARVAI--NIIEFAIKNMERE 411


>gi|50304123|ref|XP_452011.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641143|emb|CAH02404.1| KLLA0B10846p [Kluyveromyces lactis]
          Length = 430

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 41/140 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 159 PTTGILLYGPPGTGKSYLAKAVATEANSTFFSISSSDLVSKWMGESERLVKQLFAMAREN 218

Query: 113 ------LEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTA---------- 144
                 ++++D L                T+L   +N +    S +L+            
Sbjct: 219 KPSIIFIDEVDALTGQRGEGESEASRRIKTELLVQMNGVGNDSSGVLVLGATNIPWQLDS 278

Query: 145 ---RTFPVSWGVCLPDLCSR 161
              R F     + LPDL SR
Sbjct: 279 AIRRRFERRIYIPLPDLASR 298


>gi|6573151|gb|AAF17568.1|AF202034_1 endoplasmic reticulum membrane fusion protein [Drosophila
           melanogaster]
          Length = 799

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 406

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 407 DLASLC------SEAALQQIREKMD 425


>gi|332295575|ref|YP_004437498.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM
           14796]
 gi|332178678|gb|AEE14367.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM
           14796]
          Length = 627

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 47/208 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G GK+ LA   + +++   FS        + +                   
Sbjct: 190 RGVLLVGPPGCGKTLLARAVAGEAKVPFFSISGSDFVEMFVGVGASRVRDLFEQAKNQSP 249

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     ++ ++M A   P     
Sbjct: 250 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFEVDETIIVMAATNRPDVLDP 309

Query: 154 CLPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209
            L      L+       V +  PD    ++++    A     I++++    + +R     
Sbjct: 310 AL------LRPGRFDRHVTVDRPDLLGRKQILEVHLA--GKPIEEEVKVDILAKRTP-GF 360

Query: 210 VFAEKLVDKMDNLAL--SRGMGITRSLA 235
             A  L + ++  AL  +R    T S+A
Sbjct: 361 AGA-DLANLVNEAALLAARKGKKTISMA 387


>gi|296271397|ref|YP_003654029.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM
           43833]
 gi|296094184|gb|ADG90136.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM
           43833]
          Length = 679

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 65/217 (29%), Gaps = 49/217 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 204 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 263

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 264 IFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 323

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + I  PD +  + ++      R       +    I +R       
Sbjct: 324 ------LRPGRFDRQIVIDRPDLEGRKAILRVH--GRGKPFAPDVDLDVIARRTP-GFTG 374

Query: 212 AEKLVDKMDNLAL----SRGMGITRSLAAEVLKETQQ 244
           A  L + ++  AL         IT +   E +     
Sbjct: 375 A-DLANVINEAALLTARQDQKQITMATLEEAIDRVMA 410


>gi|221213645|ref|ZP_03586619.1| ATPase, AAA family [Burkholderia multivorans CGD1]
 gi|221166434|gb|EED98906.1| ATPase, AAA family [Burkholderia multivorans CGD1]
          Length = 436

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 22/170 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        E ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMDQAKETLNRTGRH-TIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +    
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLT 164

Query: 175 DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           DD + +++ +    A   +  D K    ++   +     A + ++ ++  
Sbjct: 165 DDEMRQLLKRAQHIALDGLEFDDKAVDTLIGYAD---GDARRFLNLLEQA 211


>gi|12697589|dbj|BAB21595.1| Tat binding protein like protein [Brassica rapa]
          Length = 424

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 255


>gi|298368871|ref|ZP_06980189.1| magnesium chelatase, subunit ChlI family [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298282874|gb|EFI24361.1| magnesium chelatase, subunit ChlI family [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 435

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 23/153 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRTTIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQFL 162

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203
             D L+K+I K+ A    R   I+      +V 
Sbjct: 163 SSDDLKKLIAKVLALPEYRDFTIEADAQELLVN 195


>gi|312110107|ref|YP_003988423.1| MgsA AAA+ ATPase-like protein [Geobacillus sp. Y4.1MC1]
 gi|311215208|gb|ADP73812.1| MgsA AAA+ ATPase-like protein [Geobacillus sp. Y4.1MC1]
          Length = 431

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 29/141 (20%)

Query: 65  RVVILVGPSGSGKSCLANI---------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
             ++L G  G GK+ LA+          ++  + ++    + + +++  +     + +++
Sbjct: 43  PSLLLYGEPGVGKTSLAHAIAGTVQRDFFAINATASGKKEMEEVVETAKLTGNVILFIDE 102

Query: 116 IDLLDFNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           I           H  N   Q           + +   T    +    P + SR      +
Sbjct: 103 I-----------HRFNKAQQDYLLPHIEQGLITLIGATTENPFHEVNPAIRSRCGQIKQL 151

Query: 169 KISLPDDDFLEKVIVKMFADR 189
           K   PDD  +  ++ +   DR
Sbjct: 152 KRLEPDDILI--LLRRALHDR 170


>gi|261402636|ref|YP_003246860.1| 26S proteasome subunit P45 family [Methanocaldococcus vulcanius M7]
 gi|261369629|gb|ACX72378.1| 26S proteasome subunit P45 family [Methanocaldococcus vulcanius M7]
          Length = 432

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ LA   + ++ +T    +   L    I     ++ +
Sbjct: 205 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKD 256


>gi|291301352|ref|YP_003512630.1| AAA ATPase central domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570572|gb|ADD43537.1| AAA ATPase central domain protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 448

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----NIAKSLDSILIDTRKP----------VL 112
           VIL GP G GK+ +AN+ +  +          N        +I+T +           + 
Sbjct: 62  VILWGPPGCGKTTVANLVARATDRRYVPMSALNAGVKDVRAVIETARATRRRGGAPTVLF 121

Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++++          L     +  +  +  L+ A T    + V  P L SR     ++ + 
Sbjct: 122 IDEVHRFTKTQQDALL----AAVEDRTITLLAATTENPYFSVVSP-LLSR---CVLLTLE 173

Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203
              +D +  ++ +  +D R +     ++ + A ++V+
Sbjct: 174 PLTEDDIRALVDRALSDERGLGGEVALEPEAADHLVR 210


>gi|303278730|ref|XP_003058658.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459818|gb|EEH57113.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1119

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G GK+ LA   + +S +T FS  A     + +      + +
Sbjct: 658 VMLTGPPGCGKTLLARAVAGESGATFFSLTASEFVEMFVGVGAARVRD 705


>gi|24213879|ref|NP_711360.1| recombination factor protein RarA [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45658352|ref|YP_002438.1| recombination factor protein RarA [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194725|gb|AAN48378.1| recombination factor protein RarA [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45601595|gb|AAS71075.1| ATPase [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 423

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 18/128 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G+GKS LA I   K         + ST  + I K L+    +    + L++I 
Sbjct: 44  IILYGPPGTGKSTLAGILCRKWNLPFVEYNAVSTGVAEIKKLLERAEREGTILLFLDEIH 103

Query: 118 LL-DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                    L        +    +L+ A T   ++ +  P L SR     ++KI     +
Sbjct: 104 RFSASQQDSLL----KGVETGHLILIGATTENPAFRITRP-LLSR---CQILKIEPLSLE 155

Query: 177 FLEKVIVK 184
               ++ +
Sbjct: 156 EQSSLLER 163


>gi|544175|sp|P35892|DNAA_SPIAP RecName: Full=Chromosomal replication initiator protein DnaA
 gi|416273|dbj|BAA03631.1| DnaA protein [Spiroplasma apis]
          Length = 263

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 29/174 (16%)

Query: 73  SGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPV-----LLEDIDL 118
           SG GK+ L    + +  +T           S+  K +   L D  K +      L  ID+
Sbjct: 2   SGLGKTHLLKAIAHEIGNTKNKLVVKYYTSSDFRKEIVDSLQDGFKEIESTKEKLSKIDV 61

Query: 119 LDFNDTQLFHIINS-------------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           L  +D Q   + NS               + +  +++T+  FP         L SR    
Sbjct: 62  LLIDDIQF--LANSGKTNEIFFNLFNFFIENNKQIVLTSDKFPEQLNGFDKRLVSRFSQG 119

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             VK+  PD      ++        + + ++   YI       +   E +++K+
Sbjct: 120 LNVKVETPDIITAINIVDYKAKIVNLNLSEESKKYIASFFGSDVRKIEGIINKI 173


>gi|295399332|ref|ZP_06809314.1| AAA ATPase central domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978798|gb|EFG54394.1| AAA ATPase central domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 431

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 29/141 (20%)

Query: 65  RVVILVGPSGSGKSCLANI---------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
             ++L G  G GK+ LA+          ++  + ++    + + +++  +     + +++
Sbjct: 43  PSLLLYGEPGVGKTSLAHAIAGTVQRDFFAINATASGKKEMEEVVETAKLTGNVILFIDE 102

Query: 116 IDLLDFNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           I           H  N   Q           + +   T    +    P + SR      +
Sbjct: 103 I-----------HRFNKAQQDYLLPHIEQGLITLIGATTENPFHEVNPAIRSRCGQIKQL 151

Query: 169 KISLPDDDFLEKVIVKMFADR 189
           K   PDD  +  ++ +   DR
Sbjct: 152 KRLEPDDILI--LLRRALHDR 170


>gi|281411913|ref|YP_003345992.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila
           RKU-10]
 gi|281373016|gb|ADA66578.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila
           RKU-10]
          Length = 478

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 47/190 (24%)

Query: 68  ILVGPSGSGKSCLANIWSDKS--------------RSTRFSNIAKSLDSILIDTRKPVLL 113
           I  GP G+GK+ LA I +                 R+ R  +    +D I +D      +
Sbjct: 40  IFAGPRGTGKTTLARILAKSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGI 99

Query: 114 EDI----DLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-- 155
           ++I    D +              ++  +        +  ++LL T    P      L  
Sbjct: 100 DEIRRIRDAVGYRPMEGKYKVYIIDEVHM-----LTKEAFNALLKTLEEPPSHVVFVLAT 154

Query: 156 -------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                  P + SR     V +     D+ +EK + ++     I ID++  ++I +R    
Sbjct: 155 TNLEKVPPTIISR---CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGG 211

Query: 209 LVFAEKLVDK 218
           L  A  ++++
Sbjct: 212 LRDALTMLEQ 221


>gi|170288047|ref|YP_001738285.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2]
 gi|170175550|gb|ACB08602.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2]
          Length = 478

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 47/190 (24%)

Query: 68  ILVGPSGSGKSCLANIWSDKS--------------RSTRFSNIAKSLDSILIDTRKPVLL 113
           I  GP G+GK+ LA I +                 R+ R  +    +D I +D      +
Sbjct: 40  IFAGPRGTGKTTLARILAKSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGI 99

Query: 114 EDI----DLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-- 155
           ++I    D +              ++  +        +  ++LL T    P      L  
Sbjct: 100 DEIRRIRDAVGYRPMEGKYKVYIIDEVHM-----LTKEAFNALLKTLEEPPSHVVFVLAT 154

Query: 156 -------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                  P + SR     V +     D+ +EK + ++     I ID++  ++I +R    
Sbjct: 155 TNLEKVPPTIISR---CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGG 211

Query: 209 LVFAEKLVDK 218
           L  A  ++++
Sbjct: 212 LRDALTMLEQ 221


>gi|156937784|ref|YP_001435580.1| ATPase [Ignicoccus hospitalis KIN4/I]
 gi|156566768|gb|ABU82173.1| AAA ATPase, central domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 366

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 33/124 (26%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSW-------PS-----WPSRVVILVGPSGSGKSCLA 81
               +S DD++    +E A R I+         P      WP R ++L GP G GK+ LA
Sbjct: 90  TKPKVSFDDVV---GLEDAKRAIEEAIVFPAKRPDLFPLGWP-RGILLFGPPGCGKTLLA 145

Query: 82  NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ---YDS 138
              +++  +      A ++ S  +                 +  +  + N   +      
Sbjct: 146 AAVANELDAEFIYVDAATIMSKWLGQA--------------EKNVASLFNKAREVASSGK 191

Query: 139 SLLM 142
            +++
Sbjct: 192 PVII 195


>gi|148269390|ref|YP_001243850.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila
           RKU-1]
 gi|147734934|gb|ABQ46274.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila
           RKU-1]
          Length = 478

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 47/190 (24%)

Query: 68  ILVGPSGSGKSCLANIWSDKS--------------RSTRFSNIAKSLDSILIDTRKPVLL 113
           I  GP G+GK+ LA I +                 R+ R  +    +D I +D      +
Sbjct: 40  IFAGPRGTGKTTLARILAKSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGI 99

Query: 114 EDI----DLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-- 155
           ++I    D +              ++  +        +  ++LL T    P      L  
Sbjct: 100 DEIRRIRDAVGYRPMEGKYKVYIIDEVHM-----LTKEAFNALLKTLEEPPSHVVFVLAT 154

Query: 156 -------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                  P + SR     V +     D+ +EK + ++     I ID++  ++I +R    
Sbjct: 155 TNLEKVPPTIISR---CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGG 211

Query: 209 LVFAEKLVDK 218
           L  A  ++++
Sbjct: 212 LRDALTMLEQ 221


>gi|15643449|ref|NP_228495.1| DNA polymerase III, gamma and tau subunit [Thermotoga maritima
           MSB8]
 gi|4981209|gb|AAD35768.1|AE001741_1 DNA polymerase III, gamma and tau subunit [Thermotoga maritima
           MSB8]
          Length = 478

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 47/190 (24%)

Query: 68  ILVGPSGSGKSCLANIWSDKS--------------RSTRFSNIAKSLDSILIDTRKPVLL 113
           I  GP G+GK+ LA I +                 R+ R  +    +D I +D      +
Sbjct: 40  IFAGPRGTGKTTLARILAKSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGI 99

Query: 114 EDI----DLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-- 155
           ++I    D +              ++  +        +  ++LL T    P      L  
Sbjct: 100 DEIRRIRDAVGYRPMEGKYKVYIIDEVHM-----LTKEAFNALLKTLEEPPSHVVFVLAT 154

Query: 156 -------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
                  P + SR     V +     D+ +EK + ++     I ID++  ++I +R    
Sbjct: 155 TNLEKVPPTIISR---CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGG 211

Query: 209 LVFAEKLVDK 218
           L  A  ++++
Sbjct: 212 LRDALTMLEQ 221


>gi|107022056|ref|YP_620383.1| recombination factor protein RarA [Burkholderia cenocepacia AU
           1054]
 gi|116689000|ref|YP_834623.1| recombination factor protein RarA [Burkholderia cenocepacia HI2424]
 gi|105892245|gb|ABF75410.1| Recombination protein MgsA [Burkholderia cenocepacia AU 1054]
 gi|116647089|gb|ABK07730.1| Recombination protein MgsA [Burkholderia cenocepacia HI2424]
          Length = 436

 Score = 43.6 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +   +
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLN 164

Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           DD + +++ +    A   +  D K    +V   +     A + ++ ++  
Sbjct: 165 DDEMRQLLKRAQEIALDGLAFDDKAIDTLVGYAD---GDARRFLNLLEQA 211


>gi|313886300|ref|ZP_07820026.1| recombination factor protein RarA [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924245|gb|EFR35028.1| recombination factor protein RarA [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 439

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 26  EQLFFSFPRCLGISRDDLLVH-----SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           EQ+  +         +   V       A      +++         +IL GP G GK+ L
Sbjct: 4   EQIPLAERMRPKTLEE--YVGQSHLVGANAPLRVMLER---GHIPSMILWGPPGVGKTTL 58

Query: 81  ANIWSD--KSRSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLLDFN 122
           A + S   + R    S +   +  +    ++                 + +++I     +
Sbjct: 59  ARLLSQMMQCRCYSLSAVGSGVADVRKTLQEAKEAQSGLFSQHQGRPILFIDEIHRFSKS 118

Query: 123 DT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
               L     +  +     L+ A T   S+ V  P L SR     V  +   +   L ++
Sbjct: 119 QQDSLL----AAVEQGVVTLIGATTENPSFQVIRP-LLSR---CQVFVLKPLEPSDLSQL 170

Query: 182 IVK------MFADRQIFID 194
           I +      +F+  Q+ ++
Sbjct: 171 IDRVFSTDPLFSRYQVTLE 189


>gi|229815425|ref|ZP_04445757.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM
           13280]
 gi|229808958|gb|EEP44728.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM
           13280]
          Length = 635

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 51/166 (30%)

Query: 47  SAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
            ++++ V  +++   +        R  +LVGP G+GK+ LA   + ++    FS      
Sbjct: 195 ESLKEVVDFLENPQRYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEF 254

Query: 101 DSILIDTRKP----------------VLLEDIDLLD---------FNDT------QLFHI 129
             + +                     V +++ID +           ND       QL   
Sbjct: 255 VEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEIDTIGKKRDGGGFSGNDEREQTLNQLLTE 314

Query: 130 INSIHQYDSSLLMTARTFPVSW--------------GVCLPDLCSR 161
           ++        +++ A   P S                V LPDL  R
Sbjct: 315 MDGFDNQKGIVVLAATNRPDSLDAALLRPGRFDRRVPVELPDLAGR 360


>gi|326915142|ref|XP_003203879.1| PREDICTED: nuclear valosin-containing protein-like [Meleagris
           gallopavo]
          Length = 874

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R  +L GP G GK+ LA   + +         A  +                D  +++
Sbjct: 321 PPRGFLLHGPPGCGKTLLAQAIAGELELPMLKVAATEMVSGVSGESEQKLRELFDQAVLN 380

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHI---INSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL      +N++      L++ A   P S 
Sbjct: 381 APCVLFIDEIDAITPKREVASKDMERRIVAQLLTCLDDLNNVAATAQVLVIGATNRPDSL 440

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   EK++  +   R++ + + 
Sbjct: 441 DPALR------RAGRFDREICLGIPDEAAREKILQTLC--RKLKLPES 480


>gi|308070341|ref|YP_003871946.1| hypothetical protein PPE_03591 [Paenibacillus polymyxa E681]
 gi|305859620|gb|ADM71408.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 436

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 38/163 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++L GP G GK+ LA+I S  ++    R + +  S+  +          E ID    N +
Sbjct: 54  ILLYGPPGCGKTTLAHIISQHTQGDFVRLNAVEASVKDVR---------EVIDRAQTNKS 104

Query: 125 Q------LF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
                  LF    H  NS  Q          +++    T    +      L SR   +T+
Sbjct: 105 MYGKKTILFLDEVHRFNSSRQDALLPAVEKGTIVFIGATTENPFHYVNGALMSR---STL 161

Query: 168 VKISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQ 203
            ++     +     + +  +D        Q+ +D+   A+I  
Sbjct: 162 FQLEALTQEHSLAAMRRALSDADKGLGYMQLQVDEAALAHIAS 204


>gi|300934544|ref|ZP_07149800.1| recombination factor protein RarA [Corynebacterium resistens DSM
           45100]
          Length = 545

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 30/179 (16%)

Query: 64  SRVVILVGPSGSGKS------------CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
              VIL GP G+GK+                + +  S       +  +    LI  R  V
Sbjct: 91  DSSVILYGPPGTGKTTIASLISAASDRHFEALSALNSGVKEVRAVIDNARQRLIHGRATV 150

Query: 112 L-LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           L ++++          L     S  +  + LL+ A T   S+ V  P L SR   + +V+
Sbjct: 151 LFIDEVHRFSKTQQDALL----SAVENRTVLLVAATTENPSFSVVAP-LLSR---SLLVQ 202

Query: 170 ISLPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +    D+ +  V+ +   D R     + +     + +V     S   A + +  ++  A
Sbjct: 203 LHSLTDEDIATVLTRAVEDPRGFGSKVRLSSDALSQLVA---LSAGDARRSLTYLEAAA 258


>gi|291540574|emb|CBL13685.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis XB6B4]
          Length = 524

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 121 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 180

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++     +  +++ A   P S      
Sbjct: 181 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 240

Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
                     V LPDL  R +A   V   KI   DD  L  +           +   +  
Sbjct: 241 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 298

Query: 200 YIVQRMERS 208
               R  RS
Sbjct: 299 EAALRAVRS 307


>gi|291534756|emb|CBL07868.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis M50/1]
          Length = 604

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++     +  +++ A   P S      
Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320

Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
                     V LPDL  R +A   V   KI   DD  L  +           +   +  
Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378

Query: 200 YIVQRMERS 208
               R  RS
Sbjct: 379 EAALRAVRS 387


>gi|291526623|emb|CBK92209.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1]
          Length = 604

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++     +  +++ A   P S      
Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320

Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
                     V LPDL  R +A   V   KI   DD  L  +           +   +  
Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378

Query: 200 YIVQRMERS 208
               R  RS
Sbjct: 379 EAALRAVRS 387


>gi|238922414|ref|YP_002935928.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
 gi|238874086|gb|ACR73794.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750]
          Length = 604

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++     +  +++ A   P S      
Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320

Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
                     V LPDL  R +A   V   KI   DD  L  +           +   +  
Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378

Query: 200 YIVQRMERS 208
               R  RS
Sbjct: 379 EAALRAVRS 387


>gi|240146417|ref|ZP_04745018.1| cell division protein FtsH [Roseburia intestinalis L1-82]
 gi|257201465|gb|EEU99749.1| cell division protein FtsH [Roseburia intestinalis L1-82]
          Length = 604

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++     +  +++ A   P S      
Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320

Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
                     V LPDL  R +A   V   KI   DD  L  +           +   +  
Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378

Query: 200 YIVQRMERS 208
               R  RS
Sbjct: 379 EAALRAVRS 387


>gi|225377197|ref|ZP_03754418.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM
           16841]
 gi|225210957|gb|EEG93311.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM
           16841]
          Length = 604

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++     +  +++ A   P S      
Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320

Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
                     V LPDL  R +A   V   KI   DD  L  +           +   +  
Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378

Query: 200 YIVQRMERS 208
               R  RS
Sbjct: 379 EAALRAVRS 387


>gi|226324935|ref|ZP_03800453.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758]
 gi|225206283|gb|EEG88637.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758]
          Length = 587

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 184 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 243

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++     +  +++ A   P S      
Sbjct: 244 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 303

Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
                     V LPDL  R +A   V   KI   DD  L  +           +   +  
Sbjct: 304 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 361

Query: 200 YIVQRMERS 208
               R  RS
Sbjct: 362 EAALRAVRS 370


>gi|218134340|ref|ZP_03463144.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989725|gb|EEC55736.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC
           43243]
          Length = 476

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 73  VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 132

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++     +  +++ A   P S      
Sbjct: 133 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 192

Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
                     V LPDL  R +A   V   KI   DD  L  +           +   +  
Sbjct: 193 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 250

Query: 200 YIVQRMERS 208
               R  RS
Sbjct: 251 EAALRAVRS 259


>gi|154484850|ref|ZP_02027298.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC
           27560]
 gi|149733803|gb|EDM49922.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC
           27560]
          Length = 604

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++     +  +++ A   P S      
Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320

Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
                     V LPDL  R +A   V   KI   DD  L  +           +   +  
Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378

Query: 200 YIVQRMERS 208
               R  RS
Sbjct: 379 EAALRAVRS 387


>gi|116207434|ref|XP_001229526.1| hypothetical protein CHGG_03010 [Chaetomium globosum CBS 148.51]
 gi|88183607|gb|EAQ91075.1| hypothetical protein CHGG_03010 [Chaetomium globosum CBS 148.51]
          Length = 821

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 257 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 316

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 317 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 374

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 375 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 414


>gi|304314884|ref|YP_003850031.1| proteasome-activating nucleotidase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588343|gb|ADL58718.1| predicted proteasome-activating nucleotidase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 410

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 64/177 (36%), Gaps = 42/177 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + ++ +T    +A       I     ++          
Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEK 243

Query: 113 ------LEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW 151
                 +++ID +           +        QL   ++      +  ++ A   P   
Sbjct: 244 APSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDIL 303

Query: 152 GVCLPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
              L      L+       +++ LP++D   +++    +   + + +++   ++ R+
Sbjct: 304 DPAL------LRPGRFDRFIEVPLPNEDGRREILKIHTS--GMALAEEVDIELLARI 352


>gi|301789397|ref|XP_002930115.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Ailuropoda
           melanoleuca]
          Length = 618

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 215 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 269

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 270 SFFKRKTILFIDEIHRFNKSQQD 292


>gi|289620390|emb|CBI53248.1| unnamed protein product [Sordaria macrospora]
          Length = 891

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 39/166 (23%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDT 107
              V+L GPSG GK+ LA+  +    +      A S+                D  +   
Sbjct: 257 DNGVLLHGPSGCGKTTLAHAVAGSVGAAFIPVSAPSIVGGTSGESEKNIREVFDEAIRLA 316

Query: 108 RKPVLLEDIDLLDFNDTQ---------LFHIIN---SIHQY----DSSLLMTARTFPVSW 151
              V +++ID +               +  I+N    I Q      + +++ A   P   
Sbjct: 317 PCLVFIDEIDAIAGKRESANKGMEGRIVAEIMNGMDRIKQQTPLGKNVVVLAATNRPDFL 376

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               P +  R  A   + + +P++   E ++  +  D  + +D  +
Sbjct: 377 D---PAIRRRFSA--EIDMGMPNERAREHILKSLSRD--LNVDADV 415



 Score = 37.4 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+  ++L GP G GK+ +A   +++S++   S
Sbjct: 582 PAAGILLWGPPGCGKTLVAKAVANESKANFIS 613


>gi|118576833|ref|YP_876576.1| replication factor C/ATPase involved in DNA replication
           [Cenarchaeum symbiosum A]
 gi|118195354|gb|ABK78272.1| replication factor C/ATPase involved in DNA replication
           [Cenarchaeum symbiosum A]
          Length = 386

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 33/171 (19%)

Query: 48  AIEQAVRLIDSWPS-WPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----- 99
             E+A   +  W S W      V+LVGP G+GK+ +AN+ +        S  A       
Sbjct: 17  GNEEARAALSGWFSKWKKGTKPVLLVGPPGTGKTTVANLAAKAHGYDVISLNASDARSKS 76

Query: 100 ---------LDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIHQYDSSLLMTA-- 144
                    L ++ +     + ++++D +       F     +I  + +    +++ A  
Sbjct: 77  RINEVLSPVLGNVSVLGSPMIFIDEVDGIHGRSD--FGGAEALIKILKEPAVPIVLAANS 134

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
              P    +         K + ++         +   + K+ ++    +  
Sbjct: 135 DASPKMKSIK--------KTSKLIPFRPLPPRLMRVYLRKVLSEEGASLSP 177


>gi|157126628|ref|XP_001654680.1| spermatogenesis associated factor [Aedes aegypti]
 gi|108873203|gb|EAT37428.1| spermatogenesis associated factor [Aedes aegypti]
          Length = 803

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +     
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKK 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + ++++D +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHSKNMKLADDVDLEQI----AAESHGHVGA 406

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 407 DLASLC------SEAALQQIREKMD 425



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|32400784|gb|AAP80624.1|AF475102_1 tat binding protein [Triticum aestivum]
          Length = 187

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +  +L 
Sbjct: 25  PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFELA 81


>gi|2342675|gb|AAB70397.1| Similar to probable Mg-dependent ATPase (pir|S56671). ESTs
           gb|T46782,gb|AA04798 come from this gene [Arabidopsis
           thaliana]
          Length = 419

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 199 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 250


>gi|312793248|ref|YP_004026171.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180388|gb|ADQ40558.1| AAA ATPase central domain protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 441

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 25/139 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G+GK+ +A++ ++ +  T F  I  ++  +    +   ++E+   ++F+ T  
Sbjct: 55  IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEA-KIEFSQTGR 109

Query: 126 ---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
              LF    H  N +         +    +L+ A T    + V    L SR   + V ++
Sbjct: 110 KTILFIDEIHRFNKLQQDALLPSVEEGIIILIGATTENPFYEVNKA-LVSR---SLVFEL 165

Query: 171 SLPDDDFLEKVIVKMFADR 189
               ++ + K+I +  +D+
Sbjct: 166 FPLKEEDILKIIERAISDK 184


>gi|212702534|ref|ZP_03310662.1| hypothetical protein DESPIG_00553 [Desulfovibrio piger ATCC 29098]
 gi|212673975|gb|EEB34458.1| hypothetical protein DESPIG_00553 [Desulfovibrio piger ATCC 29098]
          Length = 408

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 12/191 (6%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS--DKS 88
             P  +     DL +  +   A RL     +     ++L GP G GKS LA + +   K 
Sbjct: 6   PLPERMRPDDPDLFLGQS-HLASRLKSLMAAERLPSLLLFGPPGCGKSTLALLLARSRKR 64

Query: 89  RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146
              R S     L  +   ++  + ++L+++          F  +  +   + +LL T   
Sbjct: 65  PYLRLSAPEAGLQHLRRSLNGIEILVLDELHRFSKAQQDFF--LPLVESGELTLLATTTE 122

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P  + V    L SRL    V+++       L ++  +      + +  ++   I     
Sbjct: 123 NPS-FSVTRQ-LLSRL---HVLRLRPLGRSELMELARRGAEQTGVTLGDEVLDIITAAAH 177

Query: 207 RSLVFAEKLVD 217
                   LV+
Sbjct: 178 GDARTLLNLVE 188


>gi|71733913|ref|YP_275261.1| recombination factor protein RarA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554466|gb|AAZ33677.1| ATPase, AAA family [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 440

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      RQ+ +  +    ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVHRALTEERGLGKRQLTLSDEGFTILMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDVELLQSLLGDSRR 239


>gi|312127885|ref|YP_003992759.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777904|gb|ADQ07390.1| AAA ATPase central domain protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 441

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 25/139 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G+GK+ +A++ ++ +  T F  I  ++  +    +   ++E+   ++F+ T  
Sbjct: 55  IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEA-KIEFSQTGR 109

Query: 126 ---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
              LF    H  N +         +    +L+ A T    + V    L SR   + V ++
Sbjct: 110 KTILFIDEIHRFNKLQQDALLPSVEEGIIILIGATTENPFYEVNKA-LVSR---SLVFEL 165

Query: 171 SLPDDDFLEKVIVKMFADR 189
               ++ + K+I +  +D+
Sbjct: 166 FPLKEEDILKIIERAISDK 184


>gi|308235719|ref|ZP_07666456.1| recombination factor protein RarA [Gardnerella vaginalis ATCC
           14018]
 gi|311114730|ref|YP_003985951.1| replication-associated recombination protein A [Gardnerella
           vaginalis ATCC 14019]
 gi|310946224|gb|ADP38928.1| replication-associated recombination protein A [Gardnerella
           vaginalis ATCC 14019]
          Length = 457

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 46/209 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           V+L GP G GK+ LA I + +S          ++  K + ++L    + ++         
Sbjct: 62  VVLFGPPGVGKTTLAYIVARQSGRVFEELSAVTSGVKDVRAVLDRAHERLV------SKG 115

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 116 QETVLFIDEVHRFSKSQQDALLPSVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 171

Query: 170 ISLPDDDFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-- 222
           +     + L  +I +  +     + Q+ ID+     I+ R+  S   A K +  ++    
Sbjct: 172 LESLSVEDLHTLIERAISSENGLNNQLKIDEDAIDSII-RL--SGGDARKTLTILEAAAG 228

Query: 223 ------ALSRGMG---ITRSLAAEVLKET 242
                 AL  G     IT  + + V+  T
Sbjct: 229 AVTGDVALQHGKNKPVITADIVSNVMDTT 257


>gi|226491766|ref|NP_001142386.1| hypothetical protein LOC100274559 [Zea mays]
 gi|194690812|gb|ACF79490.1| unknown [Zea mays]
 gi|194703712|gb|ACF85940.1| unknown [Zea mays]
          Length = 430

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 210 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 261


>gi|15217431|ref|NP_172384.1| RPT5B (26S proteasome AAA-ATPase subunit RPT5B); ATPase/ calmodulin
           binding [Arabidopsis thaliana]
 gi|288558845|sp|O04019|PS6AB_ARATH RecName: Full=26S protease regulatory subunit 6A homolog B;
           AltName: Full=26S proteasome AAA-ATPase subunit RPT5b;
           AltName: Full=Proteasome 26S subunit 6A homolog B;
           AltName: Full=Regulatory particle triple-A ATPase
           subunit 5b; AltName: Full=Tat-binding protein 1 homolog
           B; Short=TBP-1 homolog B
 gi|15724310|gb|AAL06548.1|AF412095_1 At1g09100/F7G19_2 [Arabidopsis thaliana]
 gi|15215788|gb|AAK91439.1| At1g09100/F7G19_2 [Arabidopsis thaliana]
 gi|21700797|gb|AAM70522.1| At1g09100/F7G19_2 [Arabidopsis thaliana]
 gi|215433748|gb|ACJ66733.1| 26S proteasome AAA-ATPase subunit RPT5b [Arabidopsis thaliana]
 gi|332190275|gb|AEE28396.1| 26S proteasome regulatory subunit T5 [Arabidopsis thaliana]
          Length = 423

 Score = 43.6 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 254


>gi|313679564|ref|YP_004057303.1| holliday junction DNA helicase subunit ruvb [Oceanithermus
           profundus DSM 14977]
 gi|313152279|gb|ADR36130.1| Holliday junction DNA helicase subunit RuvB [Oceanithermus
           profundus DSM 14977]
          Length = 328

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 77/206 (37%), Gaps = 30/206 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113
           P   ++L GP G GK+ LA++ + +           +        ++ +  ++    + +
Sbjct: 38  PLDHLLLFGPPGLGKTTLAHVIAAELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDVLFI 97

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157
           ++I  L     +  H+  ++  +   +++       +  + LP                 
Sbjct: 98  DEIHRLSRTAEE--HLYPAMEDFKIDIVIGQGPAARTIRLDLPRFTLIGATTRPGLISGP 155

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR     V  +    ++ L + + +      I ++++ A  I +R   ++  A++L  
Sbjct: 156 LRSRF--GIVEHLEFYSEEELARGVERDARLMGIAVEREAALEIGRRSRGTMRVAKRLFR 213

Query: 218 KM-DNLALSRGMGITRSLAAEVLKET 242
           ++ D   ++    ++ +   + L   
Sbjct: 214 RVRDYAEVAGEEVVSLARTRQALDAL 239


>gi|302528372|ref|ZP_07280714.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302437267|gb|EFL09083.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 1716

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 34/171 (19%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD--------------------- 101
              R V+L GP+G G++ LA   +D          A   +                     
Sbjct: 855  AGRAVLLCGPAGCGRTTLARRATDAFPGPVLQATAAEWESGSAFAVLRQLFPDLPTDGGP 914

Query: 102  -------SILIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                   +  +     ++++D  L D +    L  ++       +++L+TA T       
Sbjct: 915  LSVAGRIAAELVPGTLLVVDDAQLADVDSMRTLSSLLRHHPAVRATVLLTAATGDSRARA 974

Query: 154  CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
             + +L +R+ +   V++   D       + ++ + R I +   +A  + + 
Sbjct: 975  DVQELLARM-SGDEVRVPPLD----AAEVSELASARGIALHPTMAERLCRH 1020


>gi|260946507|ref|XP_002617551.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238849405|gb|EEQ38869.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 425

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++ +
Sbjct: 204 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRD 255


>gi|162312486|ref|XP_001713083.1| 19S proteasome regulatory subunit Rpt5 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|3024433|sp|O14126|PRS6A_SCHPO RecName: Full=26S protease regulatory subunit 6A
 gi|6681372|dbj|BAA88693.1| regulatory subunit of 26S proteasome [Schizosaccharomyces pombe]
 gi|159883985|emb|CAB16588.2| 19S proteasome regulatory subunit Rpt5 (predicted)
           [Schizosaccharomyces pombe]
          Length = 438

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++          
Sbjct: 218 PPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 277

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +      D   ++ A     + 
Sbjct: 278 SPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTL 337

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL      +  LP+++    ++      R++ ID  +
Sbjct: 338 DPAL--LRSGRLDRKL--EFPLPNEEARVGIL--RIHSRKMAIDDDI 378


>gi|332029720|gb|EGI69599.1| Spastin [Acromyrmex echinatior]
          Length = 717

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +  +T FS  A SL S  +   + ++
Sbjct: 475 PARGLLLFGPPGNGKTLLARAVATQCNATFFSISAASLTSKYVGEGEKLV 524


>gi|293399822|ref|ZP_06643968.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306222|gb|EFE47465.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 419

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 72/185 (38%), Gaps = 22/185 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDTRKP----VLLEDID 117
           +I  GP G+GK+ LA + +++           +   K L+ I  + R      ++++++ 
Sbjct: 42  MIFYGPPGTGKTTLAMVLANELELPYRLFNAVTGNKKELEQIFAEARLYPGLILIVDEVH 101

Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD- 174
            L+ +   L   H+ N       ++ +   T         P + SR     V  +S  D 
Sbjct: 102 RLNKDKQDLLLPHVEN------GNITLIGATTSNPLHAINPAIRSRCHLFEVKALSQTDI 155

Query: 175 -DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
            +   + +      + +I I++     I +    S       ++ ++  A++    I+++
Sbjct: 156 EEALCKALQSPKGLNNEITIEEDALHIISRH---SNGDIRYALNILEICAIASDGCISKA 212

Query: 234 LAAEV 238
           L  + 
Sbjct: 213 LVEQF 217


>gi|226469026|emb|CAX69992.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Schistosoma
           japonicum]
 gi|226484784|emb|CAX74301.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Schistosoma
           japonicum]
          Length = 428

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 70/184 (38%), Gaps = 40/184 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 267

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSLLMTARTFPVSWG 152
                 ++++D +           +      +  ++N +   Q +  + + A T      
Sbjct: 268 APAIIFIDELDAIGTKRFNSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAAT--NRVD 325

Query: 153 VCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           +  P L   L++  V   ++   P+++   +++      R++ +DK +    + R     
Sbjct: 326 ILDPAL---LRSGRVDRKIEFPAPNEEARARIMQ--IHSRKMNVDKDVNFEELARCTDDF 380

Query: 210 VFAE 213
             A+
Sbjct: 381 NGAQ 384


>gi|168061595|ref|XP_001782773.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665746|gb|EDQ52420.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 422

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 202 PPKGVLLYGPPGTGKTLMARACAAQTNATYLKLAGPQLVQMFIGDGAKLVRD 253


>gi|88602329|ref|YP_502507.1| proteasome-activating nucleotidase [Methanospirillum hungatei JF-1]
 gi|121731703|sp|Q2FQ56|PAN_METHJ RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|88187791|gb|ABD40788.1| Proteasome-activating nucleotidase [Methanospirillum hungatei JF-1]
          Length = 412

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 37/166 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G+GK+ LA   + ++ +     +   L    I     ++ E        
Sbjct: 186 PPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRE-------- 237

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
                 + +   +   S++       +          SR +A T       D +    ++
Sbjct: 238 ------LFDLAKEKAPSIVFIDEIDAIG--------ASRTEAMTSG-----DREVQRTLM 278

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
             + A         +           ++ A   +D +D   L  G 
Sbjct: 279 QLLAAMDGFEPRGDV----------KIIGATNRIDILDAALLRPGR 314


>gi|74003977|ref|XP_535865.2| PREDICTED: similar to Werner helicase interacting protein isoform 1
           [Canis familiaris]
          Length = 427

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 42  PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 96

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 97  SFFKRKTILFIDEIHRFNKSQQD 119


>gi|19073988|ref|NP_584594.1| DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT
           [Encephalitozoon cuniculi GB-M1]
 gi|19068630|emb|CAD25098.1| DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT
           [Encephalitozoon cuniculi GB-M1]
          Length = 283

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 62/163 (38%), Gaps = 24/163 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
             ++L GP G+GK+  A++ + +         R          + +  +   K V+L++ 
Sbjct: 34  PNLLLYGPPGTGKTTFAHLLASQKLELNASDERGISVIREKIKVYASTLGKDKTVILDEC 93

Query: 117 DLLDFNDTQLFHIINSIHQY--DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           + L  +     H +  + +   ++  +          G   P L SRL     VK +  +
Sbjct: 94  ENLTSDAQ---HCLRRVIEDSVNTRFIFITNYPSKIIG---P-LRSRL---VSVKFTPTE 143

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
                K++  + +   +  DK+L   I++     L  A  ++ 
Sbjct: 144 ----SKILENIGSKEGLGYDKELYHRILKLCGNDLRRAINVLQ 182


>gi|117928540|ref|YP_873091.1| recombination factor protein RarA [Acidothermus cellulolyticus 11B]
 gi|117649003|gb|ABK53105.1| Recombination protein MgsA [Acidothermus cellulolyticus 11B]
          Length = 500

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 68/184 (36%), Gaps = 20/184 (10%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           RL+D   +  +  ++L GP GSGK+ LA + S  S   RF  ++     +          
Sbjct: 62  RLLDDPQA-TAPSLLLWGPPGSGKTTLAYLVSHASG-RRFVELSAVAAGVKDVRDVIAAA 119

Query: 114 EDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR 161
                     T LF    H  +           +     L+ A T   S+ V  P L SR
Sbjct: 120 RRERAASGRGTVLFLDEVHRFSKAQQDSLLPAVENGIVTLIGATTENPSFSVIGP-LLSR 178

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKM 219
              A ++ +    DD L  VI +   D R +     L     +R+ R +   A + +  +
Sbjct: 179 ---AVLLTLQPLSDDELRTVIRRAVVDPRGLAGRHTLTPAAEERLIRLAGGDARRALTYL 235

Query: 220 DNLA 223
           +  A
Sbjct: 236 EAAA 239


>gi|85712404|ref|ZP_01043454.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Idiomarina baltica OS145]
 gi|85693847|gb|EAQ31795.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Idiomarina baltica OS145]
          Length = 451

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 37/181 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123
           +IL GP G+GK+ LA + +  + +T  R S I   +  I         +++         
Sbjct: 54  MILWGPPGTGKTTLAELMATSADATVSRLSAITSGVKEIRQ------AIDEAKQRAKQQG 107

Query: 124 --TQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVK 169
             T LF    H  N   Q        D +++    T     G  L + L SR   A V +
Sbjct: 108 RRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFVGATTENP-GFELNNALLSR---ARVYR 163

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +     + L  ++ +   D       R I +  +    ++   + +   A ++++ ++  
Sbjct: 164 LESIKAEDLRALLQRTLQDPERGLGARHIRLTPEAEDRLL---DLAGGDARRMLNYLEVA 220

Query: 223 A 223
           A
Sbjct: 221 A 221


>gi|313904153|ref|ZP_07837532.1| AAA ATPase central domain protein [Eubacterium cellulosolvens 6]
 gi|313470955|gb|EFR66278.1| AAA ATPase central domain protein [Eubacterium cellulosolvens 6]
          Length = 488

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 62/172 (36%), Gaps = 28/172 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------KPVL 112
           +I  GP G+GK+ LA + ++ + +      A +     ++                  + 
Sbjct: 55  IIFYGPPGTGKTTLARVIANTTSAEFAQMNATTSGKKDMEAAVKEAQNRRGMYGKKTILF 114

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++I   +              +  + +L+ A T    + V    L SR   + V ++  
Sbjct: 115 IDEIHRFNKGQQDFLLPY---VEDGTVILIGATTENPYFEVNTA-LISR---SVVFELKP 167

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
            + + + K++++   D  + +      ++ + A ++          A   ++
Sbjct: 168 LEKEDVRKLLLRAVEDPVKGLGSYHAVLEPEAADFLADMAGGDARAALNAIE 219


>gi|296413658|ref|XP_002836526.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630353|emb|CAZ80717.1| unnamed protein product [Tuber melanosporum]
          Length = 703

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   +++S +   S     L +  I   +  +
Sbjct: 470 PSGVL-LWGPPGCGKTLLAKAIANESGANLISIRGPELLNKYIGESERAV 518


>gi|125541515|gb|EAY87910.1| hypothetical protein OsI_09330 [Oryza sativa Indica Group]
 gi|125584054|gb|EAZ24985.1| hypothetical protein OsJ_08763 [Oryza sativa Japonica Group]
          Length = 418

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 249


>gi|119470156|ref|ZP_01612922.1| recombination protein [Alteromonadales bacterium TW-7]
 gi|119446577|gb|EAW27851.1| recombination protein [Alteromonadales bacterium TW-7]
          Length = 447

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I ++ + +      A +     I        +++       T +
Sbjct: 52  LILWGPPGVGKTTLAQIIANHADAELIQMSAVTAGVKDIRDSVTQAHDNLQS-RGQRTLM 110

Query: 127 F----HIINSIHQY 136
           F    H  N   Q 
Sbjct: 111 FVDEVHRFNKSQQD 124


>gi|56695429|ref|YP_165777.1| recombination factor protein RarA [Ruegeria pomeroyi DSS-3]
 gi|56677166|gb|AAV93832.1| ATPase, AAA family [Ruegeria pomeroyi DSS-3]
          Length = 438

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G GK+ +A + + ++     + S I   +  +            I 
Sbjct: 51  ASGSLSSLVFWGPPGVGKTTIARLLAQETDLHFVQISAIFTGVPDLKKVFEAA----RIR 106

Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163
             +   T LF    H  N   Q          ++L+   T              L SR +
Sbjct: 107 RGNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LLSRAQ 163

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + ++S  D + L     +   DR++ +  +    + +  +        L++++   A
Sbjct: 164 VLVLERLSAEDLEHLTARAEREL-DRELPLTPEARLALQEMADGDGRALLNLIEQV--AA 220

Query: 224 LSRGMGITR-SLAAEVLKETQQCD 246
                 + R +LAA +++   + D
Sbjct: 221 WKVAAPLEREALAARLMRRATKYD 244


>gi|1729860|sp|P54776|PRS6A_SOLLC RecName: Full=26S protease regulatory subunit 6A homolog; AltName:
           Full=LEMA-1; AltName: Full=Mg(2+)-dependent ATPase 1;
           AltName: Full=Tat-binding protein homolog 1; Short=TBP-1
 gi|732815|emb|CAA52445.1| Mg-dependent ATPase 1 [Solanum lycopersicum]
          Length = 423

 Score = 43.6 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 254


>gi|312876940|ref|ZP_07736915.1| AAA ATPase central domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796255|gb|EFR12609.1| AAA ATPase central domain protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 441

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 25/139 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G+GK+ +A++ ++ +  T F  I  ++  +    +   ++E+   ++F+ T  
Sbjct: 55  IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEA-KIEFSQTGR 109

Query: 126 ---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
              LF    H  N +         +    +L+ A T    + V    L SR   + V ++
Sbjct: 110 KTILFIDEIHRFNKLQQDALLPSVEEGIIILIGATTENPFYEVNKA-LVSR---SLVFEL 165

Query: 171 SLPDDDFLEKVIVKMFADR 189
               ++ + K+I +  +D+
Sbjct: 166 FPLKEEDILKIIERAISDK 184


>gi|262272122|gb|ACY40036.1| AT24528p [Drosophila melanogaster]
          Length = 829

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 262 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 321

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 322 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 381

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 382 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 434

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 435 DLASLC------SEAALQQIREKMD 453



 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 535 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 591


>gi|242092170|ref|XP_002436575.1| hypothetical protein SORBIDRAFT_10g005010 [Sorghum bicolor]
 gi|241914798|gb|EER87942.1| hypothetical protein SORBIDRAFT_10g005010 [Sorghum bicolor]
          Length = 430

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 210 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 261


>gi|321314984|ref|YP_004207271.1| ATPase possibly involved in protein degradation [Bacillus subtilis
           BSn5]
 gi|320021258|gb|ADV96244.1| ATPase possibly involved in protein degradation [Bacillus subtilis
           BSn5]
          Length = 423

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 17/127 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS----------TRFSNIAKSLDSILIDTRKPVLLE 114
           R ++L GP G+GK+ L    +    +          T    I +   +        +++E
Sbjct: 221 RGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFTSSETIEEVFQAARRLAPAVLVIE 280

Query: 115 DIDLLDFNDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DID +  +    F  +N+       +   L+    +P      L +   R   A   +I 
Sbjct: 281 DIDSMPEDVRSFF--LNTLDGATSKEGLFLIGTTNYPEEIDPGLMNRAGRFDRA--YEIG 336

Query: 172 LPDDDFL 178
           LPD++  
Sbjct: 337 LPDEELR 343


>gi|319952206|ref|YP_004163473.1| aaa atpase central domain protein [Cellulophaga algicola DSM 14237]
 gi|319420866|gb|ADV47975.1| AAA ATPase central domain protein [Cellulophaga algicola DSM 14237]
          Length = 425

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 24/139 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +IL GP G+GK+ LANI + +S                     + AK    +      
Sbjct: 40  PSLILWGPPGTGKTTLANIIAMESGRPFYTLSAINSGVKDIREVIDKAKQSGGLFTTKNP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L     +  +     L+ A T   S+ V +P L SR     V 
Sbjct: 100 ILFIDEIHRFSKSQQDSLL----AAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151

Query: 169 KISLPDDDFLEKVIVKMFA 187
            +     D L  ++ +  A
Sbjct: 152 ILKEFGKDDLVALLERAIA 170


>gi|313677438|ref|YP_004055434.1| holliday junction DNA helicase ruvb [Marivirga tractuosa DSM 4126]
 gi|312944136|gb|ADR23326.1| Holliday junction DNA helicase RuvB [Marivirga tractuosa DSM 4126]
          Length = 342

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ L++I +++  S+        LD           LE+ D+L  +
Sbjct: 55  PLDHVLLHGPPGLGKTTLSHIIANELGSSLKVTSGPVLDKPGDLAGLLTNLEEGDVLFID 114

Query: 123 DTQLFHIINSIHQY 136
           +    H +N++ + 
Sbjct: 115 EI---HRLNAVVEE 125


>gi|291483756|dbj|BAI84831.1| hypothetical protein BSNT_02102 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 373

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 17/127 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS----------TRFSNIAKSLDSILIDTRKPVLLE 114
           R ++L GP G+GK+ L    +    +          T    I +   +        +++E
Sbjct: 221 RGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFTSSETIEEVFQAARRLAPAVLVIE 280

Query: 115 DIDLLDFNDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DID +  +    F  +N+       +   L+    +P      L +   R   A   +I 
Sbjct: 281 DIDSMPEDVRSFF--LNTLDGATSKEGLFLIGTTNYPEEIDPGLMNRAGRFDRA--YEIG 336

Query: 172 LPDDDFL 178
           LPD++  
Sbjct: 337 LPDEELR 343


>gi|256379279|ref|YP_003102939.1| recombination factor protein RarA [Actinosynnema mirum DSM 43827]
 gi|255923582|gb|ACU39093.1| AAA ATPase central domain protein [Actinosynnema mirum DSM 43827]
          Length = 448

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 69/176 (39%), Gaps = 32/176 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------- 112
           V+L GP G+GK+ LA + S  +          S   K + +++ + ++ ++         
Sbjct: 61  VLLYGPPGTGKTTLATLVSQATGRRFAALSALSAGVKEVRAVIEEAKRRLVRSGEATVLF 120

Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++++          L        +    LL+ A T    + V  P L SR   + V+++ 
Sbjct: 121 IDEVHRFSKTQQDALL----GAVEDRIVLLVAATTENPFFSVVSP-LLSR---SLVLQLR 172

Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ----RMERSLVFAEKLVDK 218
              D  + +++ +  AD R +     I+     ++V+       R+L   E   D 
Sbjct: 173 PLTDGSVRELVRRAAADERGLGGRVAIEPDAEDHLVRLAGGDGRRALTALEAAADT 228


>gi|226502552|ref|NP_001141483.1| hypothetical protein LOC100273594 [Zea mays]
 gi|194704750|gb|ACF86459.1| unknown [Zea mays]
          Length = 428

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|16078307|ref|NP_389124.1| ATPase possibly involved in protein degradation [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309091|ref|ZP_03590938.1| hypothetical protein Bsubs1_06861 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313418|ref|ZP_03595223.1| hypothetical protein BsubsN3_06797 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318341|ref|ZP_03599635.1| hypothetical protein BsubsJ_06736 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322614|ref|ZP_03603908.1| hypothetical protein BsubsS_06842 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81342375|sp|O34703|YJOB_BACSU RecName: Full=Uncharacterized ATPase YjoB
 gi|2612914|gb|AAC46338.1| cell division cycle CDC48 homolog [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|2633596|emb|CAB13099.1| ATPase possibly involved in protein degradation [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 423

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 17/127 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS----------TRFSNIAKSLDSILIDTRKPVLLE 114
           R ++L GP G+GK+ L    +    +          T    I +   +        +++E
Sbjct: 221 RGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFTSSETIEEVFQAARRLAPAVLVIE 280

Query: 115 DIDLLDFNDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           DID +  +    F  +N+       +   L+    +P      L +   R   A   +I 
Sbjct: 281 DIDSMPEDVRSFF--LNTLDGATSKEGLFLIGTTNYPEEIDPGLMNRAGRFDRA--YEIG 336

Query: 172 LPDDDFL 178
           LPD++  
Sbjct: 337 LPDEELR 343


>gi|85080134|ref|XP_956487.1| hypothetical protein NCU01809 [Neurospora crassa OR74A]
 gi|18376102|emb|CAD21168.1| related to nuclear VCP-like protein [Neurospora crassa]
 gi|28917553|gb|EAA27251.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 884

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 39/166 (23%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDT 107
              V+L GPSG GK+ LA+  +    +      A S+                D  +   
Sbjct: 256 DNGVLLHGPSGCGKTTLAHAVAGSVGAAFIPVSAPSIVGGTSGESEKNIRDVFDEAIRLA 315

Query: 108 RKPVLLEDIDLLDFNDTQ---------LFHIIN---SIHQY----DSSLLMTARTFPVSW 151
              + +++ID +               +  I+N    I Q      + +++ A   P   
Sbjct: 316 PCLIFIDEIDAIAGKRESANKGMEGRIVAEIMNGMDRIKQQTPLGKNVVVLAATNRPDFL 375

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               P +  R  A   + + +P++   E ++  +  D  + +   +
Sbjct: 376 D---PAIRRRFSA--EIDMGMPNERAREHILKSLSRD--LNVADDV 414



 Score = 37.4 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+  ++L GP G GK+ +A   +++S++   S
Sbjct: 581 PAAGILLWGPPGCGKTLVAKAVANESKANFIS 612


>gi|302308117|ref|NP_984925.2| AER065Cp [Ashbya gossypii ATCC 10895]
 gi|299789303|gb|AAS52749.2| AER065Cp [Ashbya gossypii ATCC 10895]
          Length = 774

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 40/172 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTR-- 108
           P R ++L GP G+GK+ L    ++++ +                   + L +I  + R  
Sbjct: 275 PPRGILLHGPPGTGKTMLLRCVANENDAHVQIINGPSLTSKFLGETEERLRAIFDEARQF 334

Query: 109 --KPVLLEDIDLLD----FND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               +L+++ID +      +D           L  +++ +    S +++     P     
Sbjct: 335 QPSIILIDEIDSIAPSRDSDDAGEAESRVVATLLTLMDGVDSSGSIVVVATTNRPNKID- 393

Query: 154 CLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFAD----RQIFIDKKLAA 199
             P L    R      V+I +PD     ++++K  +     R+ F D+ +A 
Sbjct: 394 --PALRRPGRFN--VEVEIGVPDAAARLEILMKQVSRMAESRRGFTDQDIAE 441



 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 66/197 (33%), Gaps = 36/197 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G  K+  A   + +S    F+                 + +      + 
Sbjct: 544 PPKGILLYGPPGCSKTLTAKALATESGFNFFAIKGPEVLNKYVGETERTVRELFRKAKVA 603

Query: 107 TRKPVLLEDIDLLDF--NDTQ--------LFHIINSIH---QYDSSLLMTARTFPVSWGV 153
               + +++ID L    ++          L  ++N I    + +  +++ A   P     
Sbjct: 604 APSIIFIDEIDELAKTRDEDAGSSAAANVLITLLNEIDGVEELNGVVVVAATNKPHIIDS 663

Query: 154 CLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L  + S RL     + ++ PD +   +++        +     +   + ++       A
Sbjct: 664 AL--IRSGRLD--KHIYVAPPDFEARLQILRNNTRTFGLDDPDAILKRLAEQTAHCSGAA 719

Query: 213 EKLVDKMDNLALSRGMG 229
              + +  + A++    
Sbjct: 720 VAQLCR--DAAIAATRE 734


>gi|161076486|ref|NP_001097249.1| TER94, isoform C [Drosophila melanogaster]
 gi|157400263|gb|ABV53745.1| TER94, isoform C [Drosophila melanogaster]
          Length = 826

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 259 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 318

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 319 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 378

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 379 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 431

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 432 DLASLC------SEAALQQIREKMD 450



 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 532 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 588


>gi|50292021|ref|XP_448443.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527755|emb|CAG61404.1| unnamed protein product [Candida glabrata]
          Length = 559

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 73/215 (33%), Gaps = 52/215 (24%)

Query: 65  RVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107
             +IL GP G GK+ LA +                  + K+ +    +I +        T
Sbjct: 154 PSMILWGPPGVGKTTLARLLTKTASLHGSRYTMVETSATKANAQELRSIFEKGRKEYQLT 213

Query: 108 RKPVL--LEDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSR 161
           ++ V+  +++I   +     L   H+ N        +L+  T              L SR
Sbjct: 214 KRRVVLFIDEIHRFNKAQQDLLLPHVEN-----GDIVLIGATTENPSFQLNNA---LISR 265

Query: 162 LKAATVVKISLPDDDFLEKVIVK----MFADRQ--------IFIDKKLAAYIVQRMERSL 209
                V  +    +  +  ++ +    +   R         + + + +  Y+    + S+
Sbjct: 266 ---CHVFVLEKLSETEVIIILSRGVALLNKLRNVIWNVKNPLKLSRSILVYL---CDISV 319

Query: 210 VFAEKLVDKMDNLALSRG---MGITRSLAAEVLKE 241
             A + ++ ++ + +S       +T     E++K 
Sbjct: 320 GDARRALNLLEMIEVSTRHVEKELTIEQIREIIKN 354


>gi|11499558|ref|NP_070800.1| proteasome-activating nucleotidase [Archaeoglobus fulgidus DSM
           4304]
 gi|3122632|sp|O28303|PAN_ARCFU RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|2648566|gb|AAB89280.1| 26S protease regulatory subunit 4 [Archaeoglobus fulgidus DSM 4304]
          Length = 398

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++++R+T    +        I     ++ E
Sbjct: 174 PPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVRE 225


>gi|332295959|ref|YP_004437882.1| AAA ATPase central domain protein [Thermodesulfobium narugense DSM
           14796]
 gi|332179062|gb|AEE14751.1| AAA ATPase central domain protein [Thermodesulfobium narugense DSM
           14796]
          Length = 420

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           R VIL GP G GK+ LA I +   K+     + +   +  +     K +     D     
Sbjct: 46  RSVILYGPPGVGKTTLAKIIASYSKANFEILNAVLSGVPELRKIIEKAI----DDKKRGI 101

Query: 123 DTQLF----HIINSIHQY 136
           +T LF    H  N   Q 
Sbjct: 102 ETLLFVDEVHRWNKAQQD 119


>gi|88860147|ref|ZP_01134786.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88818141|gb|EAR27957.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 446

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 25/138 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA + +  + +                 ++ ++ +S+    R  + +
Sbjct: 52  MILWGPPGTGKTTLAQLIAHHATAQFIQLSAVTAGVKEIRESVQQAKNSLQHGQRTLLFV 111

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + L + A T   S+ +    L SR +   V  + 
Sbjct: 112 DEVHRFNKSQQDAFLPHI-----EDGTFLFVGATTENPSFALNNAIL-SRTR---VYVLK 162

Query: 172 LP-DDDFLEKVIVKMFAD 188
              DDD L+ +   +  D
Sbjct: 163 SLTDDDLLQVINRALIQD 180


>gi|325660738|ref|ZP_08149366.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472812|gb|EGC76022.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 438

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 78/202 (38%), Gaps = 37/202 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA + ++ + +  T+ +        +    R+    +D   +    T
Sbjct: 55  IIFYGPPGTGKTTLAKVIANTTSANFTQINATVAGKKDMEEVVRQA---KDNQGMYGKKT 111

Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V    L SR   +++ ++  
Sbjct: 112 ILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SSIFELKP 167

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            + + + K+I++   D  R +      ID+    ++          A   ++ ++   L+
Sbjct: 168 LEKEDIRKLIMRALTDEERGMGSYHAIIDEDALEFLADICG---GDARNALNAIELGVLT 224

Query: 226 RGMG------ITRSLAAEVLKE 241
                     IT  + +E +++
Sbjct: 225 TERSEDGKIHITIDVVSECIQK 246


>gi|239978025|ref|ZP_04700549.1| AAA ATPase, central region [Streptomyces albus J1074]
 gi|291449928|ref|ZP_06589318.1| ATPase [Streptomyces albus J1074]
 gi|291352877|gb|EFE79779.1| ATPase [Streptomyces albus J1074]
          Length = 876

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 31/207 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR-------------------STRFSNIAKSLDSI 103
           PSR ++  G  G+GK+ +A +  +  R                   +      A+   ++
Sbjct: 370 PSRHLVFTGNPGTGKTTVARLLGEMYRDAGVLTRGHCVEAGPGDLIAGFVGQTAQRTAAV 429

Query: 104 LIDTRKPVLLED------IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-- 155
           +      VL  D           F D  +  ++  +      L++    +P      L  
Sbjct: 430 IDRALDGVLFIDEAYGLSDQREGFGDQAIETLLKRMEDDRDRLVVVVAGYPGKMEEFLDA 489

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI---VQRMERSLVF 211
            P L SR     VV     D   L  +++   A R +    ++A  +   V+ + R+   
Sbjct: 490 NPGLRSRFPLTNVVPFPDHDPGALHTILMNRLAQRGMTAGAEVAEELRQIVENLHRTRGA 549

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEV 238
               V +M  LA +     +  +  EV
Sbjct: 550 TFGNVREMRTLADAVRSRWSVRIGPEV 576


>gi|296138295|ref|YP_003645538.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM
           20162]
 gi|296026429|gb|ADG77199.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM
           20162]
          Length = 801

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 86/269 (31%), Gaps = 64/269 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K+K +QL    P+         D          D L + A  QA+         P  V+ 
Sbjct: 155 KSKAKQLTKDMPKTTFADVAGADEAVEELYEIKDFLQNPARYQALG-----AKIPKGVL- 208

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112
           L GP G+GK+ LA   + ++    F+        + +                     + 
Sbjct: 209 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKENSPCIIF 268

Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +++ID +               +  L  +   ++        +L+ A   P      L  
Sbjct: 269 VDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGDRQGIILIAATNRPDILDPAL-- 326

Query: 158 LCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAE 213
               L+       + +S PD    + ++      +   +   +  + + +R    +  A 
Sbjct: 327 ----LRPGRFDRQIPVSNPDMAGRKAILEVHA--KGKPLADDVDLSGLAKRTP-GMSGA- 378

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            L + ++  AL         + A +L+E+
Sbjct: 379 DLANVINEAALLTARENGSQITAPILEES 407


>gi|268590184|ref|ZP_06124405.1| replication-associated recombination protein A [Providencia
           rettgeri DSM 1131]
 gi|291314464|gb|EFE54917.1| replication-associated recombination protein A [Providencia
           rettgeri DSM 1131]
          Length = 447

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 71/198 (35%), Gaps = 36/198 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I  + +++   R S +   +  I     K       +      T
Sbjct: 53  MILWGPPGTGKTTLAEIIGNYAQADIERISAVTSGIKEIRESIEKA----RQNRSAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDK---KLAAYIVQRMERSLVFAEKLVDKMD 220
              +++ +E+V+++  AD  R +      +     K+ A +V    R  +   +++  M 
Sbjct: 163 KSLEENDIEQVLLQALADSSRGLGGQNIVLPDNTRKMVAQLVNGDARRSLNLLEMMADMA 222

Query: 221 NLALSRGMGITRSLAAEV 238
                    +T  L  EV
Sbjct: 223 EADSQGQRILTADLLKEV 240


>gi|195332987|ref|XP_002033173.1| GM21173 [Drosophila sechellia]
 gi|195582062|ref|XP_002080847.1| GD10706 [Drosophila simulans]
 gi|194125143|gb|EDW47186.1| GM21173 [Drosophila sechellia]
 gi|194192856|gb|EDX06432.1| GD10706 [Drosophila simulans]
          Length = 801

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 406

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 407 DLASLC------SEAALQQIREKMD 425



 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|159905016|ref|YP_001548678.1| replication factor C large subunit [Methanococcus maripaludis C6]
 gi|226739139|sp|A9A6N2|RFCL_METM6 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|159886509|gb|ABX01446.1| AAA ATPase central domain protein [Methanococcus maripaludis C6]
          Length = 484

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 44/221 (19%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNI 96
           V    +    LI+    W            ++L GP GSGK+ LA   +           
Sbjct: 16  VAGHNKTKETLIE----WIESFVSGQKQKPILLAGPPGSGKTTLAYAIAKDYAYDVIELN 71

Query: 97  A---------------KSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSS 139
           A                +    +   R  ++L+++D L  ND    +  II  +   ++ 
Sbjct: 72  ASDKRNKDVISQVVGTAATSKSITGRRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENP 131

Query: 140 LLMTART--FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           +++TA     P    +             ++ +     + +  V+ K+       ID+K+
Sbjct: 132 VILTANDVYKPALMTLR--------NNVNLINVGSVHTNSIPPVLRKIALKEGFEIDEKV 183

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
              I       L  A       D  +L+ G  +    A E+
Sbjct: 184 IKTIASHAGGDLRAAIN-----DLQSLATGGSLEVEDAKEL 219


>gi|126180097|ref|YP_001048062.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus
           marisnigri JR1]
 gi|125862891|gb|ABN58080.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1]
          Length = 805

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 33/164 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + V+L GP G+GK+ +A   + +S +   S               + L  +  D R  
Sbjct: 217 PPKGVLLYGPPGTGKTLIAKAVASESGAHFISIAGPEVISKYYGESEQRLREVFEDARQH 276

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + +    +++ A          
Sbjct: 277 APAIIFIDELDSIAPRREEVTGEVERRVVAQLLTMMDGLEERGQVVVIGAT---NRLDAI 333

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            P L    +    ++I +P +D   +V+      R + +   +A
Sbjct: 334 DPALRRPGRFDREIEIGVPAEDDRTQVL--HIHTRGMPLADDVA 375



 Score = 36.3 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ +A   + +S +    
Sbjct: 490 PPKGVLLYGPPGTGKTLIAKAVASESGANFVP 521


>gi|90424538|ref|YP_532908.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
 gi|90424550|ref|YP_532920.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
 gi|90106552|gb|ABD88589.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
 gi|90106564|gb|ABD88601.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18]
          Length = 287

 Score = 43.6 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 49/110 (44%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R ++L+G +G+GK+ LA   +        + R     ++   L++   + R+  + E +
Sbjct: 98  QRNIVLIGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEAETRNGRQGQIAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              DL+  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDLIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIIVTTNLAFGEWP 206


>gi|332251957|ref|XP_003275118.1| PREDICTED: nuclear valosin-containing protein isoform 2 [Nomascus
           leucogenys]
          Length = 749

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LAN  + +         A  +                +  + +
Sbjct: 190 PPRGVLLHGPPGCGKTLLANAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 249

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 250 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 309

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 310 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 349


>gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
          Length = 371

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 59/170 (34%), Gaps = 34/170 (20%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108
            W  + V+  GP G+GK+ +A   + ++                  + +K +  +     
Sbjct: 151 EWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRAS 210

Query: 109 K----PVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     V ++++D +  +                L   ++ I + +  + + A   P   
Sbjct: 211 ENAPCIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAML 270

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
               P + SR +     K+  P+D+   K++        I +   L  ++
Sbjct: 271 D---PAIRSRFEEEIEFKL--PNDEERLKIMELYAKKMPIPVKANLKEFV 315


>gi|262203872|ref|YP_003275080.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247]
 gi|262087219|gb|ACY23187.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247]
          Length = 793

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 45/213 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    F+        + +                   
Sbjct: 200 RGVLLFGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKANSP 259

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++        +L+ A   P     
Sbjct: 260 CIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRSGVILIAATNRPDILDP 319

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSL 209
            L      L+       + +  PD    + ++      + I  D  L   + +R    S 
Sbjct: 320 AL------LRPGRFDRQIPVGNPDMAGRKAILRVHAKGKPIDADADL-DGLAKRTPGMSG 372

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
                +V   +  AL       +++ AE+L+E 
Sbjct: 373 ADLANVV---NEAALLAARENKQTITAEMLEEA 402


>gi|171911243|ref|ZP_02926713.1| ATPase, AAA family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 466

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 31/180 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I S++  SR    S +  ++  I +        E  + L+   T
Sbjct: 76  LIFYGPPGVGKTTLATIISNETHSRFVTLSGVESNVAEIRMVADAA---EKEERLNGIGT 132

Query: 125 QLF----HIINSIHQ-------YDSSL-LMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N   Q          SL  + A T    + +  P L SR   + V  +  
Sbjct: 133 VLFVDEIHRFNKSQQDVLLPHLERGSLRFIGATTHNPFFYINSP-LVSR---SQVFTLEP 188

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              + LE++I +  AD  R +      I  +   ++    +       K ++ ++  AL+
Sbjct: 189 LTVEHLERLIDQAIADEERGLGKLHVEITPEAKRHLAVVCD---GDGRKCLNALELAALT 245


>gi|46122305|ref|XP_385706.1| hypothetical protein FG05530.1 [Gibberella zeae PH-1]
          Length = 821

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGVLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 372

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 373 -PALR-RFGRFDREVDIGVPDPTGRLEILQ--IHTKNMKLGDDV 412


>gi|326473927|gb|EGD97936.1| AAA family ATPase [Trichophyton tonsurans CBS 112818]
          Length = 551

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95
                 LI+         +IL G +G+GK+ LA + +    S                  
Sbjct: 163 NGVLRGLIERDR---VPSMILWGSAGTGKTTLARVIASMVGSRFVEINSTSSGVAECKKL 219

Query: 96  IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            A++ + + +  RK ++  ++I     +   +F       +     L+ A T   S+ V 
Sbjct: 220 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 276

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208
              L SR        ++   ++ +  ++ +              +D +L  Y+    +  
Sbjct: 277 NA-LLSR---CRTFTLAKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGD 332

Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235
              A  L++  MD      +++      +TR+L 
Sbjct: 333 ARTALNLLELAMDLSQRENMTKDELKKSLTRTLV 366


>gi|297820436|ref|XP_002878101.1| CIP111 [Arabidopsis lyrata subsp. lyrata]
 gi|297323939|gb|EFH54360.1| CIP111 [Arabidopsis lyrata subsp. lyrata]
          Length = 1025

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP 110
           P++ V++ GP G+GK+ LA  ++  S             S       K+LD +       
Sbjct: 420 PTKGVLIYGPPGTGKTSLARSFARDSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNA 479

Query: 111 ----VLLEDIDLLD-----FNDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V ++D+D +        +         L ++++ I + D  +++ A   P S    
Sbjct: 480 TPAVVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRSDGVVVIAATNRPDSIEPA 539

Query: 155 L 155
           L
Sbjct: 540 L 540


>gi|302881263|ref|XP_003039549.1| hypothetical protein NECHADRAFT_55976 [Nectria haematococca mpVI
           77-13-4]
 gi|256720402|gb|EEU33836.1| hypothetical protein NECHADRAFT_55976 [Nectria haematococca mpVI
           77-13-4]
          Length = 242

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 41/136 (30%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           ++L GP G+GK+ L    + +S ++       SL S  +   +                 
Sbjct: 3   ILLYGPPGTGKTHLTRSIAKESGASMLCVDGASLLSKYVGEIEKNIKAAFTLATKLHPCV 62

Query: 111 VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTA------------R 145
           + ++++D L ++                L  +        +  ++ A            R
Sbjct: 63  LFIDEVDSLFYDRGMARRTWERSAVTQFLMQMDGLAQNDKAPCVILATNRPNSLDNAFLR 122

Query: 146 TFPVSWGVCLPDLCSR 161
             P    + LPD+ SR
Sbjct: 123 RLPQKIPIGLPDMKSR 138


>gi|194702228|gb|ACF85198.1| unknown [Zea mays]
 gi|223950171|gb|ACN29169.1| unknown [Zea mays]
          Length = 428

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|125596214|gb|EAZ35994.1| hypothetical protein OsJ_20298 [Oryza sativa Japonica Group]
          Length = 368

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 195 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 246


>gi|225712126|gb|ACO11909.1| 26S protease regulatory subunit 6A [Lepeophtheirus salmonis]
 gi|290462793|gb|ADD24444.1| 26S protease regulatory subunit 6A [Lepeophtheirus salmonis]
          Length = 429

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   + ++ ST        L  + I     ++ +
Sbjct: 209 PPKGALLYGPPGTGKTLLARACAAQTNSTFLKLAGPQLVQMFIGDGAKLVRD 260


>gi|124803745|ref|XP_001347804.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
 gi|23496055|gb|AAN35717.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
          Length = 707

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDT---------RKPVL 112
           +IL GP GSGKS L N+  +K+ +   S     N+   L  +   +         +  + 
Sbjct: 216 LILCGPPGSGKSSLVNVIRNKTNNCFISLFHLNNLNNELRKVYDKSVINYKISKKKSILC 275

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++DI+ L+ +  +   +I  + +    LL T    P    +    L SR      + ++ 
Sbjct: 276 IKDINRLNKSQQENLLLI--LKKGYFYLLATCLFNP--MNILNASLSSR---CLYLYLNS 328

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            +   LE +I ++     I I++     I+     S   A   ++ +D  
Sbjct: 329 YEKTELELIIKRITNKLDIQIEEDALNLIMNH---SCGDARVAINIIDFA 375


>gi|288958714|ref|YP_003449055.1| ATPase [Azospirillum sp. B510]
 gi|288911022|dbj|BAI72511.1| ATPase [Azospirillum sp. B510]
          Length = 439

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 49/144 (34%), Gaps = 22/144 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ +A + +  +    F  ++     +  D RK              T L
Sbjct: 59  MILWGPPGCGKTTIARLLAHSTD-LHFEPLSAVFSGVA-DLRKVFDAARARRAAGQGTLL 116

Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q            +L+      P          L SR   A V  ++ 
Sbjct: 117 FIDEIHRFNRSQQDGFLPFVEDGTVTLVGATTENPSFELNAA---LLSR---AQVFVLNR 170

Query: 173 PDDDFLEKVIVKMFADRQIFIDKK 196
            DD  LEK++ +  A+    +   
Sbjct: 171 LDDAALEKLLSRAEAEMGRPLPLD 194


>gi|20094804|ref|NP_614651.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19]
 gi|19888016|gb|AAM02581.1| Predicted ATPase of the AAA+ class [Methanopyrus kandleri AV19]
          Length = 336

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 81/222 (36%), Gaps = 41/222 (18%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSC------------LANIWSDKSRSTRFSNIAKSLDSIL 104
           + +  W  + V+  GP+G+GK+             L ++ + +         ++ +    
Sbjct: 113 EEFRDWAPKTVLFYGPTGTGKTHTARAVAGEAKVPLLHMNAAEILGKYVGEASERIRRAF 172

Query: 105 IDTRKP----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLL-MTART 146
              RK       L++ID L  +                L   ++ +      ++ + A  
Sbjct: 173 TRARKAAPCVFFLDEIDALALDRRYQELRGDVVESVNALLTNLDRLKNEGEGVVFIAATN 232

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRM 205
            P       P + +R +    ++ +LP+    E+++   +  +++ +   +   YI  R 
Sbjct: 233 QPDILD---PAVRNRFEY--EIEFTLPNKREREELV--RYYAKKLPMPLDVDPRYIAART 285

Query: 206 -ERSLVFA-EKLVDKMDNLALSRGM-GITRSLAAEVLKETQQ 244
              S     E+++ +    AL  G   I R    +VL + ++
Sbjct: 286 GGMSHREIKERVLKRALLEALREGAEKIERKHIQKVLNQERE 327


>gi|318041651|ref|ZP_07973607.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 600

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 64/197 (32%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS  A     + +                     
Sbjct: 179 VLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVELFVGVGASRVRDLFRQAKEKAPCI 238

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +L+ A   P      L
Sbjct: 239 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFADNSGVILLAATNRPDVLDTAL 298

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       + + LPD    E ++      R +  +  LA +   R       A
Sbjct: 299 ------MRPGRFDRRIHVDLPDRRGREAILAVHARSRPLDPEVSLADW-ASRTP-GFSGA 350

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  A+     
Sbjct: 351 -DLSNLLNEAAILTARR 366


>gi|261204033|ref|XP_002629230.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces
           dermatitidis SLH14081]
 gi|239587015|gb|EEQ69658.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces
           dermatitidis SLH14081]
 gi|239608750|gb|EEQ85737.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces
           dermatitidis ER-3]
 gi|327355463|gb|EGE84320.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 433

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 41/142 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------------ILIDT 107
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S               +  ++
Sbjct: 163 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLFNMARES 222

Query: 108 RKPVL-LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
           R  ++ ++++D L                   L  +       +  L++ A   P    +
Sbjct: 223 RPAIIFIDEVDALCGPRGEGESEASRRIKTELLVQMQGVGKDSEGILVLGATNIPWQLDI 282

Query: 154 C------------LPDLCSRLK 163
                        LPDL +R+K
Sbjct: 283 AIRRRFQRRVHISLPDLRARMK 304


>gi|229827568|ref|ZP_04453637.1| hypothetical protein GCWU000182_02957 [Abiotrophia defectiva ATCC
           49176]
 gi|229788206|gb|EEP24320.1| hypothetical protein GCWU000182_02957 [Abiotrophia defectiva ATCC
           49176]
          Length = 437

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 29/175 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +I  GP G GK+ LA I + K+ S   +              +AK+ ++  +  R  + +
Sbjct: 53  MIFWGPPGVGKTTLAGIIAAKTHSEFINFSAVTSGIKEIKEVMAKAGETRKLGMRTVLFV 112

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ +    L SR     V  +   
Sbjct: 113 DEIHRFNKAQQDAFLPF---VERGSIILIGATTENPSFEINAA-LLSR---CKVFVLKQL 165

Query: 174 DDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             + + K++ +   D++      + I  +L   I      S   A   ++ ++  
Sbjct: 166 TTEDIAKLLTRALKDKKGFGMLNVEIADELVHAIALF---SNGDARTALNTLEMA 217


>gi|17137560|ref|NP_477369.1| TER94, isoform A [Drosophila melanogaster]
 gi|122087253|sp|Q7KN62|TERA_DROME RecName: Full=Transitional endoplasmic reticulum ATPase TER94;
           AltName: Full=Valosin-containing protein homolog
 gi|4689330|gb|AAD27852.1|AF132553_1 BcDNA.GM02885 [Drosophila melanogaster]
 gi|7303816|gb|AAF58863.1| TER94, isoform A [Drosophila melanogaster]
 gi|220942716|gb|ACL83901.1| TER94-PA [synthetic construct]
          Length = 801

 Score = 43.6 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 406

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 407 DLASLC------SEAALQQIREKMD 425



 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|284164772|ref|YP_003403051.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
           5511]
 gi|284014427|gb|ADB60378.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
           5511]
          Length = 405

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  D+   +
Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLFDVAREH 241

Query: 123 DTQL 126
           +  +
Sbjct: 242 EPAV 245


>gi|258647387|ref|ZP_05734856.1| ATPase, AAA family [Prevotella tannerae ATCC 51259]
 gi|260852753|gb|EEX72622.1| ATPase, AAA family [Prevotella tannerae ATCC 51259]
          Length = 422

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 38/177 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA--------------KSLDSILIDTRKPVL 112
            IL GP G GK+ LA I + + ++  ++  A               + +    D    + 
Sbjct: 41  FILWGPPGVGKTTLARIVATQFKAPFYTLSAVNSGVKDVRDVIEKAAKNRFFSDQSPILF 100

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L     +  +  +  L+ A T   S+ V  P L SR     V  ++
Sbjct: 101 IDEIHRFSKSQQDSLL----AAVENGTITLIGATTENPSFEVIRP-LLSR---CQVYVLN 152

Query: 172 LPDDDFLEKVIVK------MFADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMD 220
               D L +++        +  ++QI +     L  Y       S   A KL++ +D
Sbjct: 153 SLTKDELLQLLQHALTTDELLKEQQIELKETDALLRY-------SGGDARKLLNILD 202


>gi|237708886|ref|ZP_04539367.1| TnpB [Bacteroides sp. 9_1_42FAA]
 gi|229456948|gb|EEO62669.1| TnpB [Bacteroides sp. 9_1_42FAA]
          Length = 236

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GPSG+GK+ LA      +    +     +++ I+                  I   
Sbjct: 103 LILIGPSGTGKTFLAAGLVFDAVKAGYKAYLMTMEDIVNCLRLKDISTPAMMTYNKILRA 162

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + + ++DI L        T  F++IN++H+  +S+++T    P      L D
Sbjct: 163 QLLAIDDIMLFPVKRKEATAFFNLINTLHE-KTSIIITTNKAPTECVETLND 213


>gi|164662265|ref|XP_001732254.1| hypothetical protein MGL_0029 [Malassezia globosa CBS 7966]
 gi|159106157|gb|EDP45040.1| hypothetical protein MGL_0029 [Malassezia globosa CBS 7966]
          Length = 426

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P +  ++ GP G+GK+ LA   + ++ +        SL  + I     ++ +  +L 
Sbjct: 206 PPKGALMYGPPGTGKTLLARACAAQTNACYLKLAGPSLVQMFIGDGAKLVRDAFELA 262


>gi|161525591|ref|YP_001580603.1| recombination factor protein RarA [Burkholderia multivorans ATCC
           17616]
 gi|189349680|ref|YP_001945308.1| recombination factor protein RarA [Burkholderia multivorans ATCC
           17616]
 gi|221201180|ref|ZP_03574220.1| ATPase, AAA family [Burkholderia multivorans CGD2M]
 gi|221206366|ref|ZP_03579379.1| ATPase, AAA family [Burkholderia multivorans CGD2]
 gi|160343020|gb|ABX16106.1| AAA ATPase central domain protein [Burkholderia multivorans ATCC
           17616]
 gi|189333702|dbj|BAG42772.1| putative ATPase [Burkholderia multivorans ATCC 17616]
 gi|221173675|gb|EEE06109.1| ATPase, AAA family [Burkholderia multivorans CGD2]
 gi|221179030|gb|EEE11437.1| ATPase, AAA family [Burkholderia multivorans CGD2M]
          Length = 436

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 22/170 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        E ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMDQAKETLNRTGRH-TIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +    
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLT 164

Query: 175 DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           DD + +++ +    A   +  D K    ++   +     A + ++ ++  
Sbjct: 165 DDEMRQLLKRAQHIALDGLEFDDKAVDTLIGYAD---GDARRFLNLLEQA 211


>gi|332232434|ref|XP_003265410.1| PREDICTED: 26S protease regulatory subunit 4-like [Nomascus
           leucogenys]
          Length = 328

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 14/81 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E        
Sbjct: 106 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELTQKYLGDGPKLVRE-------- 157

Query: 123 DTQLFHIINSIHQYDSSLLMT 143
                 +     ++  S++ T
Sbjct: 158 ------LFRVAEEHAPSIVFT 172


>gi|322514789|ref|ZP_08067812.1| replication-associated recombination protein A [Actinobacillus
           ureae ATCC 25976]
 gi|322119251|gb|EFX91381.1| replication-associated recombination protein A [Actinobacillus
           ureae ATCC 25976]
          Length = 446

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 41/206 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 52  MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSR-----LKAA 165
            LF    H  N   Q        D +++    T              L SR     LK  
Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSRARIYILKPL 164

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
             V+I          +  K   +R +      ++  +   +   +     +A   ++ M 
Sbjct: 165 QTVEIHQ---ILQNALFDK---ERGLGNESFVLEDDVLTLLADYVNGDGRYALNCLELMS 218

Query: 221 NLALS--RGMGITRSLAAEVLKETQQ 244
           ++A    +G  + ++L  E+L E   
Sbjct: 219 DMAEQGTQGKILNKALLTELLGERSA 244


>gi|218885443|ref|YP_002434764.1| recombination factor protein RarA [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756397|gb|ACL07296.1| AAA ATPase central domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 408

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 63/162 (38%), Gaps = 14/162 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120
             ++L GP G GKS LA + ++   +   R S     L  +   +     ++L+++    
Sbjct: 39  PSLLLFGPPGCGKSTLALLLANAHGTKVLRLSAPEAGLQQLRRSLSGVDVLVLDELHRFS 98

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                 F  I    +     ++   T   S+ V    L SRL    V+++     + L +
Sbjct: 99  KAQQDFFLPI---LESGEITMIATTTENPSFSVTRQ-LLSRL---HVMRLRPLGREELME 151

Query: 181 VIVKMFADRQIFIDKKLAAYI--VQRME-RSLVFAEKLVDKM 219
           +  +    ++  +   +  ++  +   + R+++   + V  +
Sbjct: 152 LGRRGGTAQEAPLTDDVLDFLSGMSHGDARAMLNLVEYVAGL 193


>gi|195375722|ref|XP_002046649.1| GJ12996 [Drosophila virilis]
 gi|194153807|gb|EDW68991.1| GJ12996 [Drosophila virilis]
          Length = 933

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 16/79 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           PSR ++L GP G GK+ LA   + + +       A  L                +  + +
Sbjct: 283 PSRGLLLHGPPGCGKTYLARAIAGQLKMPLLEVPATELIGGISGESEERIRDVFEQAIDN 342

Query: 107 TRKPVLLEDIDLLDFNDTQ 125
           +   + +++ID +  N   
Sbjct: 343 SPCVLFIDEIDAIAGNRQW 361



 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 685 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 733


>gi|169611346|ref|XP_001799091.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15]
 gi|111062831|gb|EAT83951.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15]
          Length = 738

 Score = 43.6 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 48/201 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TRKPVL 112
           V+L GP G GK+ LA   + +S++   S     L +  +               +  P +
Sbjct: 514 VLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERAIRQVFQRARSSAPCV 573

Query: 113 L--EDIDLLDFNDTQLFH-----IINSIHQY-------DSSLLMTARTFPVSWG---VCL 155
           +  ++ D L    +   H     ++N++              L+ A   P       +  
Sbjct: 574 VFFDEFDALAPKRSTELHEASARVVNTLLTELDGLSMRQGIYLIAATNRPEMIDEAILRP 633

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER------SL 209
             L +RL       + LP       ++  +   R + +  +LA +     ER      S 
Sbjct: 634 GRLETRL------YVGLPSPKERVDILRALIRQRGV-LSAELALF----GERDECTNFSG 682

Query: 210 VFAEKLVDKMDNLALSRGMGI 230
              E L+ +   +AL R   +
Sbjct: 683 ADLEALLRRAGQIALRRKSDV 703


>gi|253574915|ref|ZP_04852255.1| AAA ATPase central domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251845961|gb|EES73969.1| AAA ATPase central domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 452

 Score = 43.2 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 70/180 (38%), Gaps = 31/180 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFND 123
           ++L GP G GK+ LA+I S  +++        ++D+ + D R+  ++E            
Sbjct: 69  ILLYGPPGCGKTTLAHIISHHTKAEFVR--LNAVDASVKDVRE--VIEKAQNDKAFYGTK 124

Query: 124 TQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           T LF    H  NS  Q          +++    T    +      L SR   +T+ ++  
Sbjct: 125 TILFLDEVHRFNSSRQDALLPAVEKGTIIFIGATTENPFHYVNGALMSR---STLFQLEP 181

Query: 173 PDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              +     + +  AD++       + +D++   +I            + ++ ++  A++
Sbjct: 182 LTKEHSLIAMRRALADQEKGLGFMPLQVDEEALLHIAAMAN---GDIRRALNALELAAMT 238


>gi|3337433|gb|AAC27447.1| transitional endoplasmic reticulum ATPase TER94 [Drosophila
           melanogaster]
          Length = 801

 Score = 43.2 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE++     A+    +  
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 406

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            LA+        S    +++ +KMD
Sbjct: 407 DLASLC------SEAALQQIREKMD 425



 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|85375691|ref|YP_459753.1| cell division cycle protein [Erythrobacter litoralis HTCC2594]
 gi|84788774|gb|ABC64956.1| Cell division cycle protein [Erythrobacter litoralis HTCC2594]
          Length = 772

 Score = 43.2 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 74/196 (37%), Gaps = 40/196 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + V+L GP G+GK+ LA   +++S +              + +  K+L  +  +    
Sbjct: 239 PPKGVLLHGPPGTGKTRLAQAVANESDANFSIINGPEIMGSGYGDSEKALREVFENASKN 298

Query: 109 --KPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + +++ A   P +    
Sbjct: 299 APAIIFIDEIDSIAPKRDRVAGEAEKRLVAQLLTLMDGLEARANVVVIAATNRPDAIDEA 358

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L     R     V  I +PD++   +++      R + +  ++    + RM    V A  
Sbjct: 359 LRR-PGRFDREIV--IGVPDENGRREIL--GIHTRGMPLGDRVDLRELARMTYGFVGA-- 411

Query: 215 LVDKMDNLALSRGMGI 230
                D  AL+R   I
Sbjct: 412 -----DIAALAREAAI 422


>gi|325118113|emb|CBZ53664.1| hypothetical protein NCLIV_034460 [Neospora caninum Liverpool]
          Length = 592

 Score = 43.2 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP GSGK+ +A   ++++ +  F                SN+ ++ +    +
Sbjct: 25  PPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKN 84

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A          
Sbjct: 85  APAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIGAT---NRQNSI 141

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PDD+   +++      R + +   +
Sbjct: 142 DPALR-RFGRFDREIDIGVPDDNGRLEIL--RIHTRNMKLANDV 182



 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D  
Sbjct: 298 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKA 354


>gi|253681470|ref|ZP_04862267.1| recombination factor protein RarA [Clostridium botulinum D str.
           1873]
 gi|253561182|gb|EES90634.1| recombination factor protein RarA [Clostridium botulinum D str.
           1873]
          Length = 419

 Score = 43.2 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 40/202 (19%)

Query: 67  VILVGPSGSGKSCLANIW------------SDKSRSTRFSNIAKSLDSIL--IDTRKPVL 112
           +IL GP G GK+ LA+I             +  +         K  + +L     R    
Sbjct: 54  IILYGPPGVGKTTLAHIISLDTKSEFVKLNATSTGVKEIREYIKKAEEVLKFYGKRTIFF 113

Query: 113 LEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +++I  L        L        +    +L+ A T    + +    L SR   + + ++
Sbjct: 114 IDEIHSLKKGSQQDALL----EAIEKGIVVLIGATTENPYFEINRA-LLSR---SKIFQL 165

Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               ++ + +V+ +   D  R      I IDK++   IV ++  S   A   ++ ++   
Sbjct: 166 ESLKENEIVEVLQRALKDSKRGYGNLKINIDKEVLK-IVAKL--SGGDARGSLNTLELAI 222

Query: 224 LSRGMG----ITRSLAAEVLKE 241
           LS        IT +   E++KE
Sbjct: 223 LSTPRNSDGSITIN--KEIIKE 242


>gi|195635679|gb|ACG37308.1| 26S protease regulatory subunit 6A [Zea mays]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|51090591|dbj|BAD36043.1| putative 26S proteasome regulatory particle triple-A ATPase
           subunit5a [Oryza sativa Japonica Group]
          Length = 265

 Score = 43.2 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 45  PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 96


>gi|332251959|ref|XP_003275119.1| PREDICTED: nuclear valosin-containing protein isoform 3 [Nomascus
           leucogenys]
          Length = 764

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LAN  + +         A  +                +  + +
Sbjct: 205 PPRGVLLHGPPGCGKTLLANAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 264

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 265 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 324

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 325 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 364


>gi|296282012|ref|ZP_06860010.1| cell division cycle protein [Citromicrobium bathyomarinum JL354]
          Length = 769

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 72/196 (36%), Gaps = 40/196 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G+GK+ LA   +++S +  F+                 + +  ++    
Sbjct: 239 PPKGVLLHGPPGTGKTRLAQAVANESDAEFFAINGPEIMGSGYGESEKRLREVFENANQA 298

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + +++ A   P +    
Sbjct: 299 APAIIFIDEIDSIAPKRDSVPGEAEKRLVAQLLTLMDGLESRANIVVIAATNRPDAIDEA 358

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L     R     V  I +PD+    +++      R + + + +    + R+    V A  
Sbjct: 359 LRR-PGRFDREIV--IGVPDETGRREIL--AIHTRGMPLGEGVDLKELARVTHGFVGA-- 411

Query: 215 LVDKMDNLALSRGMGI 230
                D  AL+R   I
Sbjct: 412 -----DIAALAREAAI 422


>gi|239628694|ref|ZP_04671725.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518840|gb|EEQ58706.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 438

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 24/172 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I  GP G+GK+ LA + ++ + +      A       ++       +++  +    T
Sbjct: 53  GSIIFYGPPGTGKTTLAKVIANTTSADFKQINATVAGKKDMEEVVKGAKDNM-GMYGRKT 111

Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V    L SR   + + ++  
Sbjct: 112 ILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LLSR---SRIFELKP 167

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
            + + + ++I +   D  R +      ID+  A ++          A   V+
Sbjct: 168 LEKEDIRELIHRAVYDKERGMGAYDPVIDEDAADFLADTANGDARAALNAVE 219


>gi|114763607|ref|ZP_01443012.1| putative transposase [Pelagibaca bermudensis HTCC2601]
 gi|114543887|gb|EAU46899.1| putative transposase [Roseovarius sp. HTCC2601]
          Length = 755

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 24/162 (14%)

Query: 14  DKQKNDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRVVILVG 71
            +    Q ++ + Q+  +  P    ++  D       E  VR L+ +      R V+L+G
Sbjct: 559 AEINEKQARSIKYQMTIAKLPLAKEVNEFDFEETPVNETLVRVLVSAEFLEQQRNVVLIG 618

Query: 72  PSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKP-----------VLL 113
            +G+GKS LA   +        + R     ++   LD+   D R+            V+L
Sbjct: 619 GTGTGKSHLAVGIARACIRSGKRGRFFNVVDLVNKLDAEARDDRQGRIADLLCRMDFVIL 678

Query: 114 EDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
           +++  L F  T    LFH+I+ +++  +S+++T       W 
Sbjct: 679 DELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 719


>gi|148243691|ref|YP_001219931.1| IstB ATP binding domain-containing protein [Acidiphilium cryptum
           JF-5]
 gi|148243744|ref|YP_001219984.1| IstB ATP binding domain-containing protein [Acidiphilium cryptum
           JF-5]
 gi|146400254|gb|ABQ28789.1| IstB domain protein ATP-binding protein [Acidiphilium cryptum JF-5]
 gi|146400307|gb|ABQ28842.1| IstB domain protein ATP-binding protein [Acidiphilium cryptum JF-5]
          Length = 291

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 25/133 (18%)

Query: 48  AIEQAVRLI--DSWPSWPSRVVILVGPSGSGKSCLANI---------WS-------DKSR 89
           +  Q + L   D W    + ++   GP G GKS LA           W        D  +
Sbjct: 90  SKAQVLALCSGDGWLDTGANLLA-FGPPGGGKSHLAAAIGLALVENGWRVLFTRTSDLVQ 148

Query: 90  STRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTA 144
             + +    +L++ +  +D    ++L+D+  +  +  +   LF +I S      SL++TA
Sbjct: 149 KLQIARRELALEATIAKLDKFHLLILDDLAYVTKDQAETSVLFELI-STRYERRSLMITA 207

Query: 145 RTFPVSWGVCLPD 157
                 WG   PD
Sbjct: 208 NQPFGEWGKVFPD 220


>gi|115350891|ref|YP_772730.1| recombination factor protein RarA [Burkholderia ambifaria AMMD]
 gi|115280879|gb|ABI86396.1| Recombination protein MgsA [Burkholderia ambifaria AMMD]
          Length = 436

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 23/180 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +    
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLQSLS 164

Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRGMGIT 231
           DD + +++ +    A   +  D K    ++   +     A + ++ ++     +    IT
Sbjct: 165 DDEMRQLLKRAQEIALDGLAFDDKAVDTLIGYAD---GDARRFLNLLEQAQTAAASSRIT 221


>gi|320450980|ref|YP_004203076.1| holliday junction DNA helicase RuvB [Thermus scotoductus SA-01]
 gi|320151149|gb|ADW22527.1| holliday junction DNA helicase RuvB [Thermus scotoductus SA-01]
          Length = 323

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 75/206 (36%), Gaps = 30/206 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113
           P   ++L GP G GK+ LA++ + +           +        ++ +  ++    + +
Sbjct: 38  PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 97

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157
           ++I  L     +  H+  ++  +   +++       +  + LP                 
Sbjct: 98  DEIHRLSRQAEE--HLYPAMEDFKMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 155

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR     V  +     + L + + +      + I ++ A  I +R   ++  A++L  
Sbjct: 156 LRSRF--GIVEHLEYYSLEELAEGVRRDARLLGVAITEEAALEIAKRSRGTMRVAKRLFR 213

Query: 218 KM-DNLALSRGMGITRSLAAEVLKET 242
           ++ D   ++    IT+    E L   
Sbjct: 214 RVRDFAQVAGEETITQERTLEALNAL 239


>gi|297676986|ref|XP_002816398.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Pongo abelii]
          Length = 658

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 255 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 309

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 310 SFFKRKTILFIDEIHRFNKSQQD 332


>gi|255081660|ref|XP_002508052.1| predicted protein [Micromonas sp. RCC299]
 gi|226523328|gb|ACO69310.1| predicted protein [Micromonas sp. RCC299]
          Length = 509

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G GK+ LA   + +S +T FS  A     + +      + +
Sbjct: 47  VMLTGPPGCGKTLLARAVAGESGATFFSLTASEFVEMFVGVGAARVRD 94


>gi|223973381|gb|ACN30878.1| unknown [Zea mays]
          Length = 366

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 146 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 197


>gi|146303255|ref|YP_001190571.1| vesicle-fusing ATPase [Metallosphaera sedula DSM 5348]
 gi|145701505|gb|ABP94647.1| Vesicle-fusing ATPase [Metallosphaera sedula DSM 5348]
          Length = 703

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 52/215 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + V+L GP G+GK+ +A   ++   +              +    K L  I     K 
Sbjct: 206 PPKGVLLYGPPGTGKTLIAKALANSVMANFFFISGPEIGSKYYGESEKRLREIFEQAEKS 265

Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +  N              QL  +++ +      L++ A   P +    
Sbjct: 266 APSMIFIDEIDAIAPNRDVTNGEADKRIVAQLLTLMDGVSSSGGLLVLGATNRPNAIDPA 325

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L     R       +I +P  D   ++ +     R+I + + +           L     
Sbjct: 326 L-----RRPGRFDREIEIPVPDKRARLDIIKIHTRRIPLAEDV----------DLEAIAS 370

Query: 215 LVDKM---DNLALSRGMGITRSLAAEVLKETQQCD 246
           + +     D  AL      T S     L+ TQ  +
Sbjct: 371 MTNGFVGADLEALV--REATMS----ALRRTQNPE 399



 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           PS V+ L GP G+GK+ LA   + +S +   +     L
Sbjct: 467 PSGVM-LYGPPGTGKTMLAKAVAHESGANFIAVSGPEL 503


>gi|47157022|gb|AAT12385.1| 26S proteasome regulatory subunit T1 [Antonospora locustae]
          Length = 412

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 38/200 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 189 PPKGVLLYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVREIFELAKSK 248

Query: 113 ------LEDIDLLDFN----------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGV 153
                  +++D                  +  +IN         +  ++ A   P +   
Sbjct: 249 KAAIIFFDEVDAFGGTRFEDSGENEVQRTMLELINQLDGFDSRGNIKVLMATNRPDTLHP 308

Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM-ERSLVF 211
            L  L   RL     V+  LPD +   +++        + ++K +   ++ RM   S   
Sbjct: 309 AL--LRPGRLD--RKVEFGLPDAEGRTQILKIHAKT--MSVEKNIRYDLIARMCPNSTGA 362

Query: 212 -AEKLVDKMDNLALSRGMGI 230
               +  +    A+     I
Sbjct: 363 ELRSVCTEAGMFAIRERRKI 382


>gi|332704198|ref|ZP_08424286.1| AAA ATPase central domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554347|gb|EGJ51391.1| AAA ATPase central domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 426

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120
             ++L GP GSGKS LA + +  +     R S     L  +   +     ++L+++    
Sbjct: 47  PSLLLFGPPGSGKSTLALLLARSTGRPYRRVSAPETGLAELRKQLSGVDLLILDEVHRYS 106

Query: 121 FNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
                 F   + N     + +L+ T    P  + V    L SRL    V+++    D  L
Sbjct: 107 KAQQDFFLPQLEN----GEVTLIATTTENPS-FSVTRQ-LLSRL---HVLRLMPLADPDL 157

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            ++  +      + I ++ +  +V  +  S   A  L++ ++ +A
Sbjct: 158 LEITNRGLKALNLEIPEE-SRRLVAGV--SGGDARTLLNLLEYVA 199


>gi|297616929|ref|YP_003702088.1| Holliday junction DNA helicase RuvB [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144766|gb|ADI01523.1| Holliday junction DNA helicase RuvB [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 346

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 78/210 (37%), Gaps = 37/210 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA++ +++           +L+           LE  ++L  +
Sbjct: 54  PLDHVLLSGPPGLGKTTLASVIANEMGKPIRKTSGPALERPGDLAAILTNLEPGEVLFID 113

Query: 123 DTQLFHIINSIHQY--------------------DSSL--------LMTARTFPVSWGVC 154
           +    H +N + +                       +L        L+ A T P      
Sbjct: 114 EI---HRLNRVVEEILYPAMEDFAIDIVIGKGPSARTLRLDLPPFTLIGATTRPGLLSSP 170

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L D     +   + ++   ++D L  +I +  A   I ID+  A  I +R   +   A +
Sbjct: 171 LRD-----RFGILCRLDFYEEDELILIITRSAALLGISIDEGGAREIARRARGTPRIANR 225

Query: 215 LVDKM-DNLALSRGMGITRSLAAEVLKETQ 243
           L+ ++ D   +  G  I   +AA  L + +
Sbjct: 226 LLKRVRDFAVVQSGGTIDAEIAAMALSKLE 255


>gi|260768112|ref|ZP_05877046.1| ATPase AAA family [Vibrio furnissii CIP 102972]
 gi|260616142|gb|EEX41327.1| ATPase AAA family [Vibrio furnissii CIP 102972]
          Length = 449

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 64/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
                + + + +   D  R +          +   +        RM  +     +L+  M
Sbjct: 166 LSQTEIRQALDQAIEDTERGLGKQVAQFHDNVLDRLSELVNGDARMSLNY---LELLYDM 222

Query: 220 DNLALSRGMGITRSLAAEV 238
                     IT SL AEV
Sbjct: 223 AEENEQGEKQITLSLLAEV 241


>gi|168049694|ref|XP_001777297.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671399|gb|EDQ57952.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 411

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 191 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 242


>gi|77462287|ref|YP_351791.1| recombination factor protein RarA [Rhodobacter sphaeroides 2.4.1]
 gi|77386705|gb|ABA77890.1| Recombination protein MgsA [Rhodobacter sphaeroides 2.4.1]
          Length = 437

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 35/201 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ +A + + ++        A      + D RK      +   +   T L
Sbjct: 57  LILWGPPGVGKTTIARLLAKETDLAFVQISAIFTG--VPDLRKVFEAAKLRRANGQGTLL 114

Query: 127 F----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q          ++L+   T              L SR   A V+ +  
Sbjct: 115 FVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LMSR---AQVIVL-- 166

Query: 173 PDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
             D      + ++         R + +D      +++  +        LV+++  +A   
Sbjct: 167 --DRLSLADLERLAQRAEHETGRALPLDGPAREALLEMADGDGRALLNLVEQV--MAWKV 222

Query: 227 GMGITR-SLAAEVLKETQQCD 246
              + R  LA  +++   + D
Sbjct: 223 KGPLDRDQLATRLMRRAAKYD 243


>gi|116050600|ref|YP_790581.1| recombination factor protein RarA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585821|gb|ABJ11836.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 441

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  I+  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAQVSDAH-FETISAVLSGVKEIRQAVEVAKQH 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R++ + ++    ++   +       +L+
Sbjct: 155 --ARVYVLKSLDEAALRKLVGRALNEDKGLGKRKLSLPEESFQVLLAAAD---GDGRRLL 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N A L+  G  I+  L   +L +T++
Sbjct: 210 NLLENAADLAEDGSEISPELLQNLLGDTRR 239


>gi|15597809|ref|NP_251303.1| recombination factor protein RarA [Pseudomonas aeruginosa PAO1]
 gi|107102135|ref|ZP_01366053.1| hypothetical protein PaerPA_01003185 [Pseudomonas aeruginosa PACS2]
 gi|218891226|ref|YP_002440092.1| recombination factor protein RarA [Pseudomonas aeruginosa LESB58]
 gi|254235599|ref|ZP_04928922.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254241046|ref|ZP_04934368.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296388928|ref|ZP_06878403.1| recombination factor protein RarA [Pseudomonas aeruginosa PAb1]
 gi|9948679|gb|AAG06001.1|AE004690_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126167530|gb|EAZ53041.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126194424|gb|EAZ58487.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218771451|emb|CAW27218.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa LESB58]
          Length = 441

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  I+  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAQVSDAH-FETISAVLSGVKEIRQAVEVAKQH 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R++ + ++    ++   +       +L+
Sbjct: 155 --ARVYVLKSLDEAALRKLVGRALNEDKGLGKRKLRLPEESFQVLLAAAD---GDGRRLL 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N A L+  G  I+  L   +L +T++
Sbjct: 210 NLLENAADLAEDGSEISPELLQNLLGDTRR 239


>gi|325270474|ref|ZP_08137076.1| AAA family ATPase [Prevotella multiformis DSM 16608]
 gi|324987197|gb|EGC19178.1| AAA family ATPase [Prevotella multiformis DSM 16608]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 68/194 (35%), Gaps = 27/194 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI------------LIDTRKPVL 112
            IL GP G GK+ LA I + +  +     S +   +  +                   + 
Sbjct: 41  FILWGPPGVGKTTLAQIIAHRLETPFYTLSAVTSGVKDVRDVIERAQKGRFFNSASPILF 100

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +  +  L+ A T   S+ V  P L SR     +  + 
Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEKGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152

Query: 172 LPD-DDFLEKVIVKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             + DD L  +   +  D ++    ID      +++           +++ + + A    
Sbjct: 153 PLEKDDLLTLLHRAVAEDTELKKRHIDLHETDALLRYSGGDARKLLNILELIVDAAPDGT 212

Query: 228 MGITRSLAAEVLKE 241
           + +T  +  E L++
Sbjct: 213 VTVTDRIVEERLQQ 226


>gi|315640057|ref|ZP_07895182.1| AAA family ATPase [Enterococcus italicus DSM 15952]
 gi|315484185|gb|EFU74656.1| AAA family ATPase [Enterococcus italicus DSM 15952]
          Length = 423

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 65/172 (37%), Gaps = 24/172 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +  ++      +    +   + I   +        +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTQFAFRTLNAATDTKKDLQIVAEEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        +L+ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHLEN-----GRIILIGATTENPYITIN-PAIRSR---TQIFEVYPLSE 152

Query: 176 DFLEKVIVKMFAD--RQIFIDKKLAAYI-VQRMER-SLVFAEKLVDKMDNLA 223
             +   + +   D  R +  D      + +  + R +       ++ ++  A
Sbjct: 153 SDIYHALEQALQDSERGLGKDAITIDEVALTHLARVTNGDLRSALNALELAA 204


>gi|313107649|ref|ZP_07793832.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa 39016]
 gi|310880334|gb|EFQ38928.1| putative ATPase associated with chromosome architecture
           [Pseudomonas aeruginosa 39016]
          Length = 441

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  I+  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAQVSDAH-FETISAVLSGVKEIRQAVEVAKQH 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R++ + ++    ++   +       +L+
Sbjct: 155 --ARVYVLKSLDEAALRKLVGRALNEDKGLGKRKLRLPEESFQVLLAAAD---GDGRRLL 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N A L+  G  I+  L   +L +T++
Sbjct: 210 NLLENAADLAEDGSEISPELLQNLLGDTRR 239


>gi|182418590|ref|ZP_02949870.1| holliday junction DNA helicase RuvB [Clostridium butyricum 5521]
 gi|237668079|ref|ZP_04528063.1| Holliday junction DNA helicase RuvB [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377593|gb|EDT75144.1| holliday junction DNA helicase RuvB [Clostridium butyricum 5521]
 gi|237656427|gb|EEP53983.1| Holliday junction DNA helicase RuvB [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 347

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +           +++           L+D D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLANIIAKEMTGDLKVTSGPAIERAGDLAAILTTLKDYDVLFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 113 -HRLNRSVEE 121


>gi|168037127|ref|XP_001771056.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677589|gb|EDQ64057.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 820

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 253 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 312

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 313 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 372

Query: 155 L 155
           L
Sbjct: 373 L 373



 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 526 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 582


>gi|209520410|ref|ZP_03269172.1| AAA ATPase central domain protein [Burkholderia sp. H160]
 gi|209499147|gb|EDZ99240.1| AAA ATPase central domain protein [Burkholderia sp. H160]
          Length = 437

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 18/130 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +D   +   +    ++ S + D R+ V    I   + + T +
Sbjct: 48  MILWGPPGVGKTTLARLMADAFHAEFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 105

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +    + + A T   S+ V    L SR   A V  +    
Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLT 161

Query: 175 DDFLEKVIVK 184
           DD   +++ +
Sbjct: 162 DDEQRELLER 171


>gi|332560168|ref|ZP_08414490.1| recombination factor protein RarA [Rhodobacter sphaeroides WS8N]
 gi|332277880|gb|EGJ23195.1| recombination factor protein RarA [Rhodobacter sphaeroides WS8N]
          Length = 437

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 35/208 (16%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            S     +IL GP G GK+ +A + + ++        A      + D RK      +   
Sbjct: 50  ASGSLSSLILWGPPGVGKTTIARLLAKETDLAFVQISAIFTG--VPDLRKVFEAAKLRRA 107

Query: 120 DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAA 165
           +   T LF    H  N   Q          ++L+   T              L SR   A
Sbjct: 108 NGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LMSR---A 161

Query: 166 TVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            V+ +    D      + ++         R + +D      +++  +        LV+++
Sbjct: 162 QVIVL----DRLSLADLERLAQRAEHETGRALPLDGPAREALLEMADGDGRALLNLVEQV 217

Query: 220 DNLALSRGMGITR-SLAAEVLKETQQCD 246
             +A      + R  LA  +++   + D
Sbjct: 218 --MAWKVKGPLDRDQLATRLMRRAAKYD 243


>gi|325336547|gb|ADZ12821.1| DNA polymerase III, gamma/tau subunits [Riemerella anatipestifer
           RA-GD]
          Length = 347

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 46/208 (22%)

Query: 64  SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++ ++  GP G GK+  A I +    +K  +T     + ++  +   +     ++DI  L
Sbjct: 39  AQALLFCGPRGVGKTTCARILARKINEKDGATSEDGFSYNIFELDAASNNS--VDDIREL 96

Query: 120 D----------------FNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCL------ 155
                             ++  +      N+        L T    P      L      
Sbjct: 97  TDQVRYAPQVGKYKVYIIDEVHMLSSQAFNAF-------LKTLEEPPAHAIFILATTEKH 149

Query: 156 ---PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
              P + SR     +        + ++  + K+     I  +      I Q+ +      
Sbjct: 150 KIIPTILSR---CQIYDFKRITIEDIQAHLRKIADKEGISYEDDALFLIAQKAD---GAL 203

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLK 240
              +   D L       IT + AAEVL 
Sbjct: 204 RDALSIFDRLVTFTQKNITLAKAAEVLN 231


>gi|319408738|emb|CBI82395.1| ATPase, AAA family [Bartonella schoenbuchensis R1]
          Length = 443

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 66/189 (34%), Gaps = 33/189 (17%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPV 111
           R+I+   S     +I  GP G+GK+ +A + + ++     + S I   +  +    +K  
Sbjct: 47  RMIE---SGSFGSMIFWGPPGTGKTTIARLLALETNFAFEQVSAICTGVTEL----KKIF 99

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
            +     +    T LF    H  N           +  + +L+  T              
Sbjct: 100 EVAQARFISGCRTLLFVDEIHRFNRAQQDVFLPFMEDGTVVLVGATTENPSFELNSA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEK 214
           L SR +     ++    D     +++K   +   + + +D      +++  +     A  
Sbjct: 157 LLSRAR-VLTFRLH---DSKSLNMLLKRAEEVEGKSLPLDDHARDLLIRMSDGDARAALT 212

Query: 215 LVDKMDNLA 223
           L +++   A
Sbjct: 213 LAEEIWRAA 221


>gi|315022325|gb|EFT35353.1| putative DNA polymerase III [Riemerella anatipestifer RA-YM]
          Length = 559

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 46/208 (22%)

Query: 64  SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++ ++  GP G GK+  A I +    +K  +T     + ++  +   +     ++DI  L
Sbjct: 39  AQALLFCGPRGVGKTTCARILARKINEKDGATSEDGFSYNIFELDAASNNS--VDDIREL 96

Query: 120 D----------------FNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCL------ 155
                             ++  +      N+        L T    P      L      
Sbjct: 97  TDQVRYAPQVGKYKVYIIDEVHMLSSQAFNAF-------LKTLEEPPAHAIFILATTEKH 149

Query: 156 ---PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
              P + SR     +        + ++  + K+     I  +      I Q+ +      
Sbjct: 150 KIIPTILSR---CQIYDFKRITIEDIQAHLRKIADKEGISYEDDALFLIAQKAD---GAL 203

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLK 240
              +   D L       IT + AAEVL 
Sbjct: 204 RDALSIFDRLVTFTQKNITLAKAAEVLN 231


>gi|242004678|ref|XP_002423206.1| 26S protease regulatory subunit 6A, putative [Pediculus humanus
           corporis]
 gi|212506177|gb|EEB10468.1| 26S protease regulatory subunit 6A, putative [Pediculus humanus
           corporis]
          Length = 381

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 68/201 (33%), Gaps = 38/201 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 161 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 220

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +          ++ A       
Sbjct: 221 APAIIFIDELDAVGTKRFDSEKAGDREVQRTMLELLNQLDGFSSNADIKVIAATNRVDIL 280

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++   P+++   +++      R++ +   +    + R      
Sbjct: 281 DPAL--LRSGRLD--RKIEFPHPNEEARARIMQ--IHSRKMNVSPDVNFEELSRSTDDFN 334

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
            A+     ++   ++     T
Sbjct: 335 GAQCKAVCVEAGMIALRRNAT 355


>gi|194708576|gb|ACF88372.1| unknown [Zea mays]
          Length = 418

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 249


>gi|164662339|ref|XP_001732291.1| hypothetical protein MGL_0066 [Malassezia globosa CBS 7966]
 gi|159106194|gb|EDP45077.1| hypothetical protein MGL_0066 [Malassezia globosa CBS 7966]
          Length = 446

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 19/128 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL-- 118
             ++L GP GSGK+ LA + + ++      T F  +  S  +   +  K ++ E ++   
Sbjct: 91  PSMVLWGPPGSGKTTLARLLTREAITTTNHTPFRFVELSATTATANDVKRIVEEAVNRQM 150

Query: 119 LDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           L    T LF       N           +     L+ A T   S+ +    L SRL+   
Sbjct: 151 LTTQRTVLFIDEIQRFNRAQQDLFLPMLERGLITLLAATTENPSFRLQGA-LLSRLRVVV 209

Query: 167 VVKISLPD 174
           + K+S  D
Sbjct: 210 LTKLSECD 217


>gi|192289525|ref|YP_001990130.1| IstB domain protein ATP-binding protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192283274|gb|ACE99654.1| IstB domain protein ATP-binding protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 242

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 22/115 (19%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLE-- 114
            R V+L+G +G+GK+ LA   +        + R     ++   L++     R+  L +  
Sbjct: 98  QRNVVLIGGTGTGKTHLAIAIARNCIRAGARGRFFTTVDLVNRLEAEARSGRQARLADYL 157

Query: 115 -DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             +D +  ++             LFH+I+ +++  +S+++T       W     D
Sbjct: 158 TRLDFIILDELGYLPFAQAGGQLLFHLISRLYER-TSIIVTTNLAFGEWPTVFGD 211


>gi|125554262|gb|EAY99867.1| hypothetical protein OsI_21861 [Oryza sativa Indica Group]
          Length = 415

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 195 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 246


>gi|82751226|ref|YP_416967.1| recombination factor protein RarA [Staphylococcus aureus RF122]
 gi|82656757|emb|CAI81186.1| probable ATPase [Staphylococcus aureus RF122]
          Length = 424

 Score = 43.2 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 31/171 (18%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKS-------LDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   S   + +  + + +  +       ++   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQFVVEEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +D+ + + + +   D        Q  ID+   AY   + +  +  A   ++
Sbjct: 152 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALE 202


>gi|322372274|ref|ZP_08046815.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
 gi|320548283|gb|EFW89956.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
          Length = 740

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAAEE 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ +      +++ A     S    
Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEARGQVIVIAATNRVDS---V 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD++   +++      R + +   +
Sbjct: 339 DPALRRPGRFDREIEIGVPDEEGRTEILQ--IHTRGMPLSDDV 379



 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 55/217 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P   V+L GP G+GK+ +A   ++++ +   S                 I ++       
Sbjct: 495 PPSGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV 554

Query: 107 TRKPVLLEDIDLLD---FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
           +   +  +++D L      +           QL   ++ +      +++ A   P     
Sbjct: 555 SPTVIFFDELDSLAPGRGQEVGSNVSERVVNQLLTELDGLEDKGDVMVIGATNRPDMIDP 614

Query: 154 CLPDLCS----RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
            L  + S    RL     V I  PD++  E+++     D  +  D  L         R L
Sbjct: 615 AL--IRSGRFDRL-----VMIGQPDEEGREQILKIHTEDSPLAPDVSL---------REL 658

Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
                     D  +++R   I      E L+E    +
Sbjct: 659 AEMTDGYVGSDLESIAREAAI------EALREDDDAE 689


>gi|313150350|dbj|BAJ39942.1| hypothetical protein [Terrabacter sp. DBF63]
          Length = 156

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 20/114 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSIL-- 104
           P R + + GPSG+GK+      + K+                 +   + +  S+  +L  
Sbjct: 3   PRRNLAISGPSGTGKTHFVEALAHKAIDEGMRVSWFTLESLTTAIGRAAVDGSISKVLAK 62

Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ--YDSSLLMTARTFPVSWGVCLP 156
           I   + V+++DI +L             +       SL +T+   P  +   +P
Sbjct: 63  ITRAELVVVDDIGMLPSGQAAAEAFYRLVDATYERRSLAVTSNIHPAGYDTIMP 116


>gi|225718536|gb|ACO15114.1| 26S protease regulatory subunit 6A [Caligus clemensi]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 66/202 (32%), Gaps = 38/202 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  +L GP G+GK+ LA   + ++ ST        L  + I     ++          
Sbjct: 208 PPKGALLYGPPGTGKTLLARACAAQTNSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A       
Sbjct: 268 APAIIFIDELDAIGTERFDSEKAGDREVQRTMLELLNQLDGFSSSDDIKVIAATNRVDIL 327

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++   P ++   +++      R++ I  ++    + R      
Sbjct: 328 DPAL--LRSGRLD--RKIEFPAPTEEARARIMQ--IHSRKMNISGEVNFDELARSTDDFN 381

Query: 211 FAEKLVDKMDNLALSRGMGITR 232
            A+     ++   ++     T 
Sbjct: 382 GAQCKAVCVEAGMIALRREATI 403


>gi|15678755|ref|NP_275871.1| proteasome-activating nucleotidase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3122631|sp|O26824|PAN_METTH RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|2621817|gb|AAB85233.1| ATP-dependent 26S protease regulatory subunit 4
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 410

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 64/177 (36%), Gaps = 42/177 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + ++ +T    +A       I     ++          
Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEK 243

Query: 113 ------LEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW 151
                 +++ID +           +        QL   ++      +  ++ A   P   
Sbjct: 244 SPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDIL 303

Query: 152 GVCLPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
              L      L+       +++ LP++D   +++    +   + + +++   ++ R+
Sbjct: 304 DPAL------LRPGRFDRFIEVPLPNEDGRREILKIHTS--GMALAEEVDIELLARI 352


>gi|329848354|ref|ZP_08263382.1| C4-dicarboxylate transport transcriptional regulatory protein dctD
           [Asticcacaulis biprosthecum C19]
 gi|328843417|gb|EGF92986.1| C4-dicarboxylate transport transcriptional regulatory protein dctD
           [Asticcacaulis biprosthecum C19]
          Length = 403

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR---FSNIAKSLDSILIDTRKPVLLEDIDLLD-FN 122
           V+L G +G+GK+  A  +  +S           A +   +       +L+E+ID L    
Sbjct: 166 VLLTGEAGTGKTLAAMAFHRQSGRANLTCVEASALTAGDLDDMANTTLLVENIDRLGEGQ 225

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
              L   ++   +++S L+ T+       G+
Sbjct: 226 GPALLAWLHRAPRHNSRLIATSTRPRAELGL 256


>gi|225568918|ref|ZP_03777943.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM
           15053]
 gi|225162417|gb|EEG75036.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM
           15053]
          Length = 445

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 27/161 (16%)

Query: 39  SRDDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           S DD      L+        +LID         +I  GP G GK+ LA I + ++++   
Sbjct: 25  SLDDFAGQEHLLGPG-RLLRQLIDKDQ---ISSMIFWGPPGVGKTTLARIIARRTKADFI 80

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLL 141
              A +     I         + D      T +F    H  N           +  S +L
Sbjct: 81  DFSAVTSGIKEIKEVMSKA--EKDRHAGIRTLVFVDEIHRFNKAQQDAFLPYVEKGSIIL 138

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
           + A T   S+ +    L SR     V  +    +  L +++
Sbjct: 139 IGATTENPSFEINAA-LLSR---CKVFVLQALTEKDLLRLL 175


>gi|312075254|ref|XP_003140335.1| AAA ATPase [Loa loa]
 gi|307764496|gb|EFO23730.1| AAA ATPase [Loa loa]
          Length = 353

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 41/140 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------DSILIDTRK- 109
           P + V+L GP G GK+ LA I +  + +   +    SL            D++    +K 
Sbjct: 121 PPKGVLLYGPPGCGKTLLAKIIARAANARFINLQVSSLCDKWYGESQKLADAVFSVAQKF 180

Query: 110 ---PVLLEDIDLLDFNDTQLFH------------IINSIHQYDSSLLMTA---------- 144
               + +++ID    +     H            + +     D ++++            
Sbjct: 181 QPTIIFIDEIDSFLRDRNTQDHEATAMMKAQFMCLWDGFASSDDAIIVLGATNRPNDVDS 240

Query: 145 ---RTFPVSWGVCLPDLCSR 161
              R  P  + V LP L SR
Sbjct: 241 AILRRMPARFYVPLPSLESR 260


>gi|241663732|ref|YP_002982092.1| recombination factor protein RarA [Ralstonia pickettii 12D]
 gi|240865759|gb|ACS63420.1| AAA ATPase central domain protein [Ralstonia pickettii 12D]
          Length = 449

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 21/187 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +IL GP G GK+ LA + ++   +   +              + ++        R  V +
Sbjct: 54  MILWGPPGVGKTTLARLMANAFDAEFIALSAVLSGVKDIREAVERAEQFRANGRRTLVFV 113

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +      + A T   S+ V    L SR   A V  +   
Sbjct: 114 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKSL 166

Query: 174 DDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            DD L+++  +   +   +         IV   +         V+ +   A S+  G T 
Sbjct: 167 SDDELKQLAERARQELGGLEWTPAALDAIVASADGDGRKLLNNVEIVTRAARSQAEGDTV 226

Query: 233 SLAAEVL 239
            +  E L
Sbjct: 227 PVIDEAL 233


>gi|56421126|ref|YP_148444.1| Holliday junction DNA helicase RuvB [Geobacillus kaustophilus
           HTA426]
 gi|81819658|sp|Q5KWR0|RUVB_GEOKA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56380968|dbj|BAD76876.1| holliday junction DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 333

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 43/209 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +L+           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLAVIIANEMGVKLRATSGPALERPGDLAALLTSLEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQY--------------------DSSL--------LMTARTFPVSWGVCLPD- 157
            H +    +                       +L        L+ A T   +    L D 
Sbjct: 114 -HRLPRAVEEVLYPAMEDYCLDITIGKGPDARTLRLDLPPFTLVGATTRAGALSAPLRDR 172

Query: 158 --LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             + SRL+   V        D L ++I +  A  QI I+++ A  + +R   +   A +L
Sbjct: 173 FGVISRLEYYHV--------DQLAQIIERAAAILQIGIEREAALELARRARGTPRIANRL 224

Query: 216 VDKMDNLALSRG-MGITRSLAAEVLKETQ 243
           + ++ + A  RG  GIT  LA E L+  Q
Sbjct: 225 LRRVRDFAQVRGEGGITLPLAVEALERLQ 253


>gi|126461163|ref|YP_001042277.1| recombination factor protein RarA [Rhodobacter sphaeroides ATCC
           17029]
 gi|221638141|ref|YP_002524403.1| recombination factor protein RarA [Rhodobacter sphaeroides KD131]
 gi|126102827|gb|ABN75505.1| Recombination protein MgsA [Rhodobacter sphaeroides ATCC 17029]
 gi|221158922|gb|ACL99901.1| Recombination protein MgsA [Rhodobacter sphaeroides KD131]
          Length = 437

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            S     +IL GP G GK+ +A + + ++        A      + D RK      +   
Sbjct: 50  ASGSLSSLILWGPPGVGKTTIARLLAKETDLAFVQISAIFTG--VPDLRKVFEAAKLRRA 107

Query: 120 DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAA 165
           +   T LF    H  N   Q          ++L+   T              L SR   A
Sbjct: 108 NGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LMSR---A 161

Query: 166 TVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            V+ +       LE++  +   +  R + +D      +++  +        LV+++  +A
Sbjct: 162 QVIVLERLSLADLERLAQRAEHETGRALPLDGPAREALLEMADGDGRALLNLVEQV--MA 219

Query: 224 LSRGMGITR-SLAAEVLKETQQCD 246
                 + R  LA  +++   + D
Sbjct: 220 WKVKGPLDRDQLATRLMRRAAKYD 243


>gi|192289465|ref|YP_001990070.1| IstB domain protein ATP-binding protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192283214|gb|ACE99594.1| IstB domain protein ATP-binding protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 287

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 49/110 (44%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+L+G +G+GK+ LA   +        ++R     ++   L++   + ++  + E +
Sbjct: 98  QRNVVLIGGTGTGKTHLAIAIARNCIRAGARARFYNVVDLVNRLETEARNGKQGQIAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+I+ +++  +S+++T       W 
Sbjct: 158 TRMDFVVLDELGYLPFAQAGGQLLFHLISRLYER-TSIIVTTNLAFGEWP 206


>gi|114766529|ref|ZP_01445486.1| putative transposase [Pelagibaca bermudensis HTCC2601]
 gi|114541219|gb|EAU44270.1| putative transposase [Roseovarius sp. HTCC2601]
          Length = 652

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 24/162 (14%)

Query: 14  DKQKNDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRVVILVG 71
            +    Q ++ + Q+  +  P    ++  D       E  VR L+ +      R V+L+G
Sbjct: 456 AEINEKQARSIKYQMTIAKLPLAKEVNEFDFEETPVNETLVRVLVSAEFLEQQRNVVLIG 515

Query: 72  PSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKP-----------VLL 113
            +G+GKS LA   +        + R     ++   LD+   D R+            V+L
Sbjct: 516 GTGTGKSHLAVGIARACIRSGKRGRFFNVVDLVNKLDAEARDDRQGRIADLLCRMDFVIL 575

Query: 114 EDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
           +++  L F  T    LFH+I+ +++  +S+++T       W 
Sbjct: 576 DELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 616


>gi|114767638|ref|ZP_01446357.1| putative transposase [Pelagibaca bermudensis HTCC2601]
 gi|114540342|gb|EAU43434.1| putative transposase [Roseovarius sp. HTCC2601]
          Length = 652

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 24/162 (14%)

Query: 14  DKQKNDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRVVILVG 71
            +    Q ++ + Q+  +  P    ++  D       E  VR L+ +      R V+L+G
Sbjct: 456 AEINEKQARSIKYQMTIAKLPLAKEVNEFDFEETPVNETLVRVLVSAEFLEQQRNVVLIG 515

Query: 72  PSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKP-----------VLL 113
            +G+GKS LA   +        + R     ++   LD+   D R+            V+L
Sbjct: 516 GTGTGKSHLAVGIARACIRSGKRGRFFNVVDLVNKLDAEARDDRQGRIADLLCRMDFVIL 575

Query: 114 EDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
           +++  L F  T    LFH+I+ +++  +S+++T       W 
Sbjct: 576 DELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 616


>gi|73961501|ref|XP_537239.2| PREDICTED: similar to Nuclear valosin-containing protein-like
           (Nuclear VCP-like protein) (NVLp) [Canis familiaris]
          Length = 955

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------------LDSILID 106
           P R V+L GP G GK+ LA+  + +         A                   +  + +
Sbjct: 364 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAATEVVSGVSGESEQKLRELFEQAVSN 423

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N+       L++ A   P S 
Sbjct: 424 APCVLFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNTTAATARVLVIGATNRPDSL 483

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
              L       +A      + + +PD+   E+++  +   R++ + +
Sbjct: 484 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPE 522


>gi|302425218|sp|D4GUJ7|PAN1_HALVD RecName: Full=Proteasome-activating nucleotidase 1; Short=PAN 1;
           AltName: Full=Proteasomal ATPase 1; AltName:
           Full=Proteasome regulatory ATPase 1; AltName:
           Full=Proteasome regulatory particle 1
 gi|54694989|gb|AAV38126.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
          Length = 406

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ ++        L    I     ++ +  ++   N
Sbjct: 183 PPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 242

Query: 123 DTQL 126
           +  +
Sbjct: 243 EPAV 246


>gi|115466690|ref|NP_001056944.1| Os06g0173100 [Oryza sativa Japonica Group]
 gi|55773703|dbj|BAD72286.1| putative 26S proteasome regulatory particle triple-A ATPase
           subunit5a [Oryza sativa Japonica Group]
 gi|113594984|dbj|BAF18858.1| Os06g0173100 [Oryza sativa Japonica Group]
          Length = 429

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 209 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 260


>gi|15643274|ref|NP_228318.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga maritima MSB8]
 gi|20178177|sp|Q9WYX8|Y508_THEMA RecName: Full=UPF0189 protein TM_0508
 gi|4981020|gb|AAD35593.1|AE001727_5 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 599

 Score = 43.2 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 25/176 (14%)

Query: 68  ILVGPSGSGKS----CLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVL-LE 114
           IL GP GSGK+     L   ++ +           +   N+ K  + +    +K +L L+
Sbjct: 46  ILYGPPGSGKTSVFSLLKRYFNGEVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLD 105

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +I  L+ N   +  +++ + + D  L+ T    P    V +P L SR     ++      
Sbjct: 106 EIHRLNKNQQMV--LVSHVERGDIVLVATTTENPSF--VIVPALLSR---CRILYFKKLS 158

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD--NLALSRGM 228
           D+ L K++ K      I +++ +   IV+  E     A KL++ ++  + A     
Sbjct: 159 DEDLMKILKKATEVLNIDLEESVEKAIVRHSE---GDARKLLNTLEIVHQAFKNKR 211


>gi|322491749|emb|CBZ27022.1| putative proteasome regulatory ATPase subunit 1 [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 437

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++++ +T    I   L    I     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265


>gi|304436891|ref|ZP_07396855.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370090|gb|EFM23751.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 447

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 28/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I + ++++    FS +   +  I    ++     D   +     
Sbjct: 55  MIFWGPPGVGKTTLAQIIAARTKAEFITFSAVTSGIKEIRTVMQEA----DRRRMYGERI 110

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  S +L+ A T   S+ +    L SR     V  +  
Sbjct: 111 VVFVDEIHRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINNA-LLSR---CRVFVLQG 166

Query: 173 PDDDFLEKVIVKMFA-DRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             +  +E ++    A DR++      +       +          A   ++ +
Sbjct: 167 LTEADIEHLLRHAIATDRELSQMHIHLSDDGITAVAAFANGDARSALSTLEML 219


>gi|288939849|ref|YP_003442089.1| AAA ATPase central domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288895221|gb|ADC61057.1| AAA ATPase central domain protein [Allochromatium vinosum DSM 180]
          Length = 435

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 27/188 (14%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           ++ S  +  +IL GP G GK+ LA + + ++ +  F  ++     +          E   
Sbjct: 41  AFQSGQAHSMILWGPPGVGKTTLARL-TAQAFAGEFIALSAVFAGVKDIRAAMEQAEH-H 98

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
                 T LF    H  N           +     L+ A T   S+ V    L SR   A
Sbjct: 99  RSRGRRTILFVDEIHRFNKAQQDALLPYVESGLVTLIGATTENPSFEVNAA-LLSR---A 154

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            V  +    D  L +++++  A  Q    +  D      ++   +     A + ++ ++ 
Sbjct: 155 QVYVLQSLTDAELRQLLMR--ARDQVLTHLQFDAAAVDTLIGYAD---GDARRCLNLLEQ 209

Query: 222 LALSRGMG 229
             ++ G  
Sbjct: 210 CHIAAGTA 217


>gi|226941287|ref|YP_002796361.1| recombination factor protein RarA [Laribacter hongkongensis HLHK9]
 gi|226716214|gb|ACO75352.1| recombination factor protein RarA [Laribacter hongkongensis HLHK9]
          Length = 442

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 26/171 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G GK+ LA I +    +                  + ++  +        + +
Sbjct: 52  MILWGPPGVGKTTLARILAHAFDAEFTPLSAVFSGVKDIREAVERAQMAAARGRHTILFV 111

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +      + A T   S+ V    L SR   A V  +   
Sbjct: 112 DEVHRFNKSQQDAFLPF---VEAGLFTFIGATTENPSFEVNAA-LLSR---AQVYVLKPL 164

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            D  LE + V+  A      + +D    A +    +     A + ++ ++ 
Sbjct: 165 TDADLEALFVRAQAAGVLEGLELDAAARAVLAGYAD---GDARRFLNLLEQ 212


>gi|255542742|ref|XP_002512434.1| 26S protease regulatory subunit 6a, putative [Ricinus communis]
 gi|223548395|gb|EEF49886.1| 26S protease regulatory subunit 6a, putative [Ricinus communis]
          Length = 429

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +T        L  + I     ++ +
Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 254


>gi|146086546|ref|XP_001465575.1| proteasome regulatory ATPase subunit 1 [Leishmania infantum JPCM5]
 gi|134069674|emb|CAM67998.1| putative proteasome regulatory ATPase subunit 1 [Leishmania
           infantum JPCM5]
 gi|322499017|emb|CBZ34089.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 437

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++++ +T    I   L    I     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265


>gi|154337475|ref|XP_001564970.1| proteasome regulatory ATPase subunit 1 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134062009|emb|CAM45095.1| putative proteasome regulatory ATPase subunit 1 [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 437

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++++ +T    I   L    I     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265


>gi|159037439|ref|YP_001536692.1| recombination factor protein RarA [Salinispora arenicola CNS-205]
 gi|157916274|gb|ABV97701.1| AAA ATPase central domain protein [Salinispora arenicola CNS-205]
          Length = 502

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK---------PVL 112
           VIL GP GSGK+ +A++ +  +          +   K + +++   R+          + 
Sbjct: 74  VILWGPPGSGKTTIAHLVAGATDRRFVAMSALNAGVKDVRAVIEAARRQRRTGGPPTVLF 133

Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++++          L     +  +  +  L+ A T    + V  P L SR     ++ + 
Sbjct: 134 IDEVHRFSKTQQDSLL----AAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 185

Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203
             DDD +  ++ +   D R +     +      ++V+
Sbjct: 186 PLDDDAVRSLLRRAVVDGRGLGGTPALAPDAEEHLVR 222


>gi|157869313|ref|XP_001683208.1| proteasome regulatory ATPase subunit 1 [Leishmania major strain
           Friedlin]
 gi|68224092|emb|CAJ04186.1| putative proteasome regulatory ATPase subunit 1 [Leishmania major
           strain Friedlin]
          Length = 437

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++++ +T    I   L    I     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265


>gi|72391158|ref|XP_845873.1| proteasome regulatory ATPase subunit 1 [Trypanosoma brucei TREU927]
 gi|9651733|gb|AAF91243.1|AF227499_1 proteasome regulatory ATPase subunit 1 [Trypanosoma brucei]
 gi|62175505|gb|AAX69645.1| proteasome regulatory ATPase subunit 1 [Trypanosoma brucei]
 gi|70802409|gb|AAZ12314.1| proteasome regulatory ATPase subunit 1 [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
 gi|261329341|emb|CBH12322.1| proteasome regulatory ATPase subunit 1 [Trypanosoma brucei
           gambiense DAL972]
          Length = 437

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++++ +T    I   L    I     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265


>gi|74213878|dbj|BAE29367.1| unnamed protein product [Mus musculus]
          Length = 351

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V++ GP G+GK+ LA   + ++++T        L  + I      L+ D   L   
Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFI-GDGAKLVRDAFALAKE 280

Query: 123 DT 124
           + 
Sbjct: 281 EA 282


>gi|328951016|ref|YP_004368351.1| AAA ATPase central domain protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328451340|gb|AEB12241.1| AAA ATPase central domain protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 431

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 44/133 (33%), Gaps = 18/133 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +   R+      A +     +                  T L
Sbjct: 47  MILWGPPGVGKTTLARVLAQGVRAEFIPLSAVAAGVKEVREAVARAE--AAARVGRRTVL 104

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +     L+ A T   S+ V  P L SR   A V  +   +
Sbjct: 105 FLDEVHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARVYVLKPLE 160

Query: 175 DDFLEKVIVKMFA 187
              L +V+ +   
Sbjct: 161 KADLLRVLQRALE 173


>gi|292655013|ref|YP_003534910.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
 gi|291372419|gb|ADE04646.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
          Length = 405

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ ++        L    I     ++ +  ++   N
Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 241

Query: 123 DTQL 126
           +  +
Sbjct: 242 EPAV 245


>gi|261420121|ref|YP_003253803.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61]
 gi|319766933|ref|YP_004132434.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52]
 gi|261376578|gb|ACX79321.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61]
 gi|317111799|gb|ADU94291.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52]
          Length = 250

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 24/125 (19%)

Query: 67  VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVL------LEDI 116
           V+L+G  G+GK+ LA        ++    RF  +A  +  +    +  +L      ++  
Sbjct: 96  VLLLGSPGTGKTHLATALGLKACERGHEVRFFRVADLVAQLEEALKDGILGRLKRQIDTC 155

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +LL  ++             LFHII   ++   S+++T+      W     D  +RL AA
Sbjct: 156 ELLILDELGYVPFQKQGSELLFHIIADCYER-KSVIVTSNLEFGQWNRVFGD--NRLTAA 212

Query: 166 TVVKI 170
            V ++
Sbjct: 213 LVDRL 217


>gi|217967181|ref|YP_002352687.1| ATPase AAA [Dictyoglomus turgidum DSM 6724]
 gi|217336280|gb|ACK42073.1| AAA ATPase central domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 431

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 37/202 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I+ GP GSGK+ L+ + +    +      A  +    +         +++L +   T
Sbjct: 52  PSLIIYGPPGSGKTTLSVLLAKAINAEFIELNAAIVGVQELKEALQKAKRNLELYNKR-T 110

Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N +         +    +L+  T      S       L SR     +V++
Sbjct: 111 VLFLDEIHHFNKLQQDVLLPFVERGIMILIGATTENPFFSLNTT---LLSR---CRLVEL 164

Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                + +E++I +   D       R + I++     IV+        A   ++ ++  +
Sbjct: 165 KPLSKENIERIIKRALEDKERGLGERDLEINEDAMEEIVRFAN---GDARIALNTLELAS 221

Query: 224 LS------RGMGITRSLAAEVL 239
                     + ITR++  EV+
Sbjct: 222 FMVAPSENGKLIITRNIVKEVI 243


>gi|119897658|ref|YP_932871.1| recombination factor protein RarA [Azoarcus sp. BH72]
 gi|119670071|emb|CAL93984.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 445

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 29/194 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +    +   +  A    S + D R+ ++           T L
Sbjct: 52  MILWGPPGVGKTTLARLMAKGFDAEFVALSAVF--SGVKDIREAIVQAQAAKARGRHTIL 109

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V    L SR   A V  +   
Sbjct: 110 FVDEVHRFNKAQQ-DAFLPYVEQGLVTFIGATTENPSFEVNSA-LLSR---AAVYVLEPL 164

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQ-RM----ERSLVFAEKLVDKMDNLALSRG- 227
           D + ++ +  +    R +     +     + RM    +        L++++   A + G 
Sbjct: 165 DTEAMQGLFERA---RSLACPDLVFEEAARERMIGFADGDARRLMNLIEQIQVAAETAGV 221

Query: 228 MGITRSLAAEVLKE 241
             +T     E L  
Sbjct: 222 APVTADFVDEALSR 235


>gi|15228991|ref|NP_191228.1| CIP111 (CAM INTERACTING PROTEIN 111); ATPase/ calmodulin binding
           [Arabidopsis thaliana]
 gi|9662988|emb|CAC00732.1| calmodulin-binding protein [Arabidopsis thaliana]
 gi|332646031|gb|AEE79552.1| Cam interacting protein 111 [Arabidopsis thaliana]
          Length = 1022

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP 110
           P++ V++ GP G+GK+ LA  ++  S             S       K+LD +       
Sbjct: 417 PTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNA 476

Query: 111 ----VLLEDIDLLD-----FNDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V ++D+D +        +         L ++++ I + D  +++ A   P S    
Sbjct: 477 TPAVVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPA 536

Query: 155 L 155
           L
Sbjct: 537 L 537


>gi|297265754|ref|XP_002799248.1| PREDICTED: spastin-like [Macaca mulatta]
          Length = 596

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 344 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 393


>gi|261418394|ref|YP_003252076.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC61]
 gi|319767647|ref|YP_004133148.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC52]
 gi|261374851|gb|ACX77594.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC61]
 gi|317112513|gb|ADU95005.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC52]
          Length = 333

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 43/209 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +L+           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLAVIIANEMGVKLRATSGPALERPGDLAALLTSLEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQY--------------------DSSL--------LMTARTFPVSWGVCLPD- 157
            H +    +                       +L        L+ A T   +    L D 
Sbjct: 114 -HRLPRAVEEVLYPAMEDYCLDIAIGKGPDARTLRLDLPPFTLVGATTRAGALSAPLRDR 172

Query: 158 --LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             + SRL+   V        D L ++I +  A  QI I+++ A  + +R   +   A +L
Sbjct: 173 FGVISRLEYYHV--------DQLAQIIERAAAILQIGIEREAALELARRARGTPRIANRL 224

Query: 216 VDKMDNLALSRG-MGITRSLAAEVLKETQ 243
           + ++ + A  RG  GIT  LA E L+  Q
Sbjct: 225 LRRVRDFAQVRGEGGITLPLAVEALERLQ 253


>gi|153809776|ref|ZP_01962444.1| hypothetical protein RUMOBE_00157 [Ruminococcus obeum ATCC 29174]
 gi|149833954|gb|EDM89034.1| hypothetical protein RUMOBE_00157 [Ruminococcus obeum ATCC 29174]
          Length = 427

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 32/174 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122
           VI  GP G+GK+ LA + ++ + +  T+ +        +     + V+ E  D L     
Sbjct: 55  VIFYGPPGTGKTTLAKVIANTTSASFTQINATVAGKKDM-----EEVVKEAQDRLGMYGK 109

Query: 123 DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  + +L+ A T    + V    L SR   + + ++
Sbjct: 110 KTILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SIIFEL 165

Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
               ++ +  +I++   D           ID     ++          A   V+
Sbjct: 166 KPLSNENIRTLILRAVNDCDKGMGNYGAVIDDDALEFLADMAGGDARSALNAVE 219


>gi|326480926|gb|EGE04936.1| AAA family ATPase [Trichophyton equinum CBS 127.97]
          Length = 551

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95
                 LI+         +IL G +G+GK+ LA + +    S                  
Sbjct: 163 NGVLRGLIERDR---VPSMILWGSAGTGKTTLARVIASMVGSRFVEINSTSSGVAECKKL 219

Query: 96  IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            A++ + + +  RK ++  ++I     +   +F       +     L+ A T   S+ V 
Sbjct: 220 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 276

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208
              L SR        ++   ++ +  ++ +              +D +L  Y+    +  
Sbjct: 277 NA-LLSR---CRTFTLAKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGD 332

Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235
              A  L++  MD      +++      +TR+L 
Sbjct: 333 ARTALNLLELAMDLSQRENMTKDELKKSLTRTLV 366


>gi|218195010|gb|EEC77437.1| hypothetical protein OsI_16238 [Oryza sativa Indica Group]
          Length = 571

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 36/203 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 318 RGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEVFVGRGAARVRDLFKEAKEAAP 377

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        ++M A   P +    L 
Sbjct: 378 SIIFIDELDAVGGSRGRSFNDERDQTLNQLLTEMDGFDSDMKVIVMAATNRPKALDPALC 437

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V + +PD +    ++     D  +  D ++   +V  +   LV A  
Sbjct: 438 RPGRFSR-----KVLVGVPDLEGRRNILAVHLRDVPLEEDPEIICDLVASLTPGLVGA-D 491

Query: 215 LVDKMDNLALSRGMGITRSLAAE 237
           L + ++  AL        ++A E
Sbjct: 492 LANIVNEAALLAARRGGNTVARE 514


>gi|170289821|ref|YP_001736637.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173901|gb|ACB06954.1| AAA family ATPase, CDC48 subfamily [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 742

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 83/223 (37%), Gaps = 57/223 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G+GK+ LA   +++S +   S                 + +  +    +
Sbjct: 226 PPKGVLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKYYGESEKRLREIFEEAEKN 285

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +  N              QL  +++ +      +++ A   P +    
Sbjct: 286 APSIIFIDELDSIAPNRNEVTGEVERRVVAQLLALMDGLKGRGEVIVIGATNRPEAID-- 343

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI------------ 201
            P L    +    ++I +PD +  ++++  +   R + +   +    +            
Sbjct: 344 -PALRRPGRFDREIEIGVPDREGRKEIL--LIHTRNMPLADDVDLDRLADITHGFVGADL 400

Query: 202 --VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             + R E ++    +++ K+D  A       +  L  EVL+E 
Sbjct: 401 AALVR-EAAMAALRRVLPKIDLDA------ESIPL--EVLEEL 434



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R V+L GP G GK+ +A   +++S +   S     L
Sbjct: 499 PPRGVLLYGPPGCGKTLIAKAVANESEANFISVKGPEL 536


>gi|50550265|ref|XP_502605.1| YALI0D09119p [Yarrowia lipolytica]
 gi|49648473|emb|CAG80793.1| YALI0D09119p [Yarrowia lipolytica]
          Length = 413

 Score = 43.2 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++ +
Sbjct: 193 PPKGALMYGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRD 244


>gi|221507884|gb|EEE33471.1| calmodulin-binding protein, putative [Toxoplasma gondii VEG]
          Length = 746

 Score = 43.2 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87
          P + V+L GP GSGK+ LA   +++
Sbjct: 43 PPKGVLLYGPPGSGKTHLARALAEE 67


>gi|221483404|gb|EEE21723.1| spermatogenesis associated factor, putative [Toxoplasma gondii
          GT1]
          Length = 746

 Score = 43.2 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87
          P + V+L GP GSGK+ LA   +++
Sbjct: 43 PPKGVLLYGPPGSGKTHLARALAEE 67


>gi|330916077|ref|XP_003297285.1| hypothetical protein PTT_07630 [Pyrenophora teres f. teres 0-1]
 gi|311330141|gb|EFQ94627.1| hypothetical protein PTT_07630 [Pyrenophora teres f. teres 0-1]
          Length = 784

 Score = 43.2 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 69/192 (35%), Gaps = 32/192 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF----- 121
           V+LVGP G+GK+ LA   + ++    F   A    +  I     V ++++D +       
Sbjct: 367 VLLVGPPGTGKTLLARACAGEAGVPFFYMSAARSKAPAI-----VFIDELDAVGGKRKSR 421

Query: 122 ----NDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA---TVVKIS 171
               +   L  ++N      Q    + + A   P      L      L+       V++ 
Sbjct: 422 DANYHRQTLNQLLNDLDGFDQSTGVIFIAATNHPELLDQAL------LRPGRFDRHVQVE 475

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           LPD      ++       ++  D  L++  + R       AE  ++ + N A  R   + 
Sbjct: 476 LPDVTGRLAILKYHTKKIRLSPDIDLSS--IARGTPGFSGAE--LENLANSAAIRASKLQ 531

Query: 232 RSLAAEVLKETQ 243
               +  L + +
Sbjct: 532 AKFVS--LNDME 541


>gi|291280185|ref|YP_003497020.1| Holliday junction DNA helicase RuvB [Deferribacter desulfuricans
           SSM1]
 gi|290754887|dbj|BAI81264.1| Holliday junction DNA helicase RuvB [Deferribacter desulfuricans
           SSM1]
          Length = 343

 Score = 43.2 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 70/176 (39%), Gaps = 20/176 (11%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
           ++ GP G GK+ LANI +++   +  S    +++           L + D+L  ++    
Sbjct: 55  LIYGPPGLGKTTLANIIANELGVSIKSTSGPTIEKPGDLAAILTNLSEGDVLFIDEIHRL 114

Query: 128 H------IINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS--RLKAATV 167
           H      +  ++  +   +++       +  + LP             L S  R +   +
Sbjct: 115 HTSVEEILYPAMEDFKLDIIIGQGPAARTIKIDLPKFTLIGATTRAGLLTSPLRDRFGMI 174

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            ++   D D L++++++      + ID   A  I  R   +   A +++ ++ + A
Sbjct: 175 FRLDFYDVDELKQIVLRGAKVLGVEIDDSAAMVIASRCRGTPRIAHRILRRVRDFA 230


>gi|330503298|ref|YP_004380167.1| recombination factor protein RarA [Pseudomonas mendocina NK-01]
 gi|328917584|gb|AEB58415.1| recombination factor protein RarA [Pseudomonas mendocina NK-01]
          Length = 441

 Score = 43.2 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 30/187 (16%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  + +  F  I+  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVTDAH-FETISAVLSGVKEIRQAVEVAQQH 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  + K++ +  +D      R + +       ++   +       +L+
Sbjct: 155 --ARVYVLKSLDEAAMRKLVNRALSDPKGLGERHLSLPDDAFQILLAAAD---GDGRRLL 209

Query: 217 DKMDNLA 223
           + ++N A
Sbjct: 210 NFLENAA 216


>gi|298713722|emb|CBJ48913.1| flagellar associated protein [Ectocarpus siliculosus]
          Length = 932

 Score = 43.2 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 33/147 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108
           R V+L GP G GK+ LA     ++ +                   +N+ K+ +    ++ 
Sbjct: 356 RGVLLYGPPGCGKTLLARAVIAETGAHLVTVNGPDIMGKVAGESETNLRKAFEEAEENSP 415

Query: 109 KPVLLEDIDLL------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             V ++++D +         +T      QL  +++ I      +++ A   P    V  P
Sbjct: 416 SIVFIDEVDSIAPKRDKAGGETEKRIVSQLLTLMDGIKPTSHVVVIAATNRP---NVIDP 472

Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVI 182
            L  R  +    + I +PD+    +V+
Sbjct: 473 ALR-RFGRFDRELDIGIPDEQGRLEVL 498



 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 14/74 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           PS+ V+  GP G GK+ LA   +++  +   S     L S+     +  + E        
Sbjct: 626 PSKGVLFYGPPGCGKTLLAKAVANQCNANFISVKGPELLSMWFGESEANIRE-------- 677

Query: 123 DTQLFHIINSIHQY 136
                 + N     
Sbjct: 678 ------LFNKARAA 685


>gi|291530499|emb|CBK96084.1| phage DNA replication protein (predicted replicative helicase
           loader) [Eubacterium siraeum 70/3]
          Length = 280

 Score = 43.2 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 28/130 (21%)

Query: 50  EQAVRLIDSWPS-WPSRVVIL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96
             A R ++ W       +  L  G  G+GKS LA   ++              +   +++
Sbjct: 111 GLARRYVEHWEDMRTDNIGCLFWGGVGTGKSYLAGCIANALMEKEIPVRMTNFALILNDL 170

Query: 97  AKSLDSI-----LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           A S +        +     ++L+D  +    +    Q+F++I+S ++    L++T     
Sbjct: 171 AASFEGRNEYISRLCRYPLLILDDFGMERGTEYGLEQVFNVIDSRYRSGKPLIVTT---- 226

Query: 149 VSWGVCLPDL 158
               + L DL
Sbjct: 227 ---NLTLDDL 233


>gi|256078590|ref|XP_002575578.1| 26S protease regulatory subunit 6a [Schistosoma mansoni]
 gi|238660819|emb|CAZ31811.1| 26S protease regulatory subunit 6a, putative [Schistosoma mansoni]
          Length = 404

 Score = 43.2 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|194745851|ref|XP_001955398.1| GF16259 [Drosophila ananassae]
 gi|190628435|gb|EDV43959.1| GF16259 [Drosophila ananassae]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|190574295|ref|YP_001972140.1| recombination factor protein RarA [Stenotrophomonas maltophilia
           K279a]
 gi|190012217|emb|CAQ45840.1| putative ATPase [Stenotrophomonas maltophilia K279a]
          Length = 453

 Score = 43.2 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125
           +IL GP G GK+ LA + ++ + +      A S     +   + VL E          T 
Sbjct: 62  MILWGPPGCGKTTLALLLAEYADAEF---RAISAVLSGLPEVRQVLAEAAQRFAEGRRTV 118

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L    T              L SR +   V++  
Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCR-VHVLEGV 174

Query: 172 LPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
            P D  + + + +   DR+       I +  +L   I    +  +  A  L++    LA 
Sbjct: 175 SPTD--IVEALERALGDRERGLGEEHIEVAPELLLEIATAADGDVRRALTLLEIAAELAG 232

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 233 GEGGRITPQTLTQVLADRTR 252


>gi|116309721|emb|CAH66766.1| OSIGBa0115M15.4 [Oryza sativa Indica Group]
          Length = 577

 Score = 43.2 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 36/203 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 324 RGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEVFVGRGAARVRDLFKEAQEAAP 383

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        ++M A   P +    L 
Sbjct: 384 SIIFIDELDAVGGSRGRSFNDERDQTLNQLLTEMDGFDSDMKVIVMAATNRPKALDPALC 443

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V + +PD +    ++     D  +  D ++   +V  +   LV A  
Sbjct: 444 RPGRFSR-----KVLVGVPDLEGRRNILAVHLRDVPLEEDPEIICDLVASLTPGLVGA-D 497

Query: 215 LVDKMDNLALSRGMGITRSLAAE 237
           L + ++  AL        ++A E
Sbjct: 498 LANIVNEAALLAARRGGNTVARE 520


>gi|255636469|gb|ACU18573.1| unknown [Glycine max]
          Length = 486

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 26/150 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+R ++L GP G+GK+ LA   + +S++T F+  A SL S  +   + ++          
Sbjct: 247 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEAEKLV---------- 296

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP---DLCSRLKAATVVKIS----LPDD 175
              LF     +       ++            L    D   RLK+  +++       PDD
Sbjct: 297 -RTLF----MVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDD 351

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
                VIV    ++   +D  +   +V+R+
Sbjct: 352 ----IVIVIGATNKPQELDDAVLRRLVKRI 377


>gi|222529053|ref|YP_002572935.1| recombination factor protein RarA [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455900|gb|ACM60162.1| AAA ATPase central domain protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 441

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 59/138 (42%), Gaps = 23/138 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFND 123
           +IL GP G+GK+ +A++ ++ +  T F  I  ++  +    +   ++E+           
Sbjct: 55  IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEAKFEFTQTGKK 110

Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N +         +    +L+ A T    + V    L SR   + V ++ 
Sbjct: 111 TILFIDEIHRFNKLQQDALLPSVEEGVIILIGATTENPFYEVNKA-LVSR---SLVFELF 166

Query: 172 LPDDDFLEKVIVKMFADR 189
              ++ + K+I +  +D+
Sbjct: 167 PLKEEDILKIIERAISDK 184


>gi|161505182|ref|YP_001572294.1| hypothetical protein SARI_03320 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866529|gb|ABX23152.1| hypothetical protein SARI_03320 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1397

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 12/106 (11%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIA 97
              D +    ++ A           S ++IL G +G GKS L   I + + +S     + 
Sbjct: 313 DFSDFIKGPLLKLA----------NSPLMILSGEAGIGKSHLLADIANHRIKSRIPCLLL 362

Query: 98  KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIIN-SIHQYDSSLLM 142
              + +  ++    +L +I  +D  +  L   +N         LL 
Sbjct: 363 LGQNFVSEESPWTQILRNILRVDGKENVLLGALNARAEAQGERLLF 408


>gi|219847790|ref|YP_002462223.1| Holliday junction DNA helicase RuvB [Chloroflexus aggregans DSM
           9485]
 gi|254767418|sp|B8G5S6|RUVB_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|219542049|gb|ACL23787.1| Holliday junction DNA helicase RuvB [Chloroflexus aggregans DSM
           9485]
          Length = 350

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 77/201 (38%), Gaps = 27/201 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            +  GP G GK+ LAN+ +++  +        +++           L+  D+L  ++   
Sbjct: 57  TLFYGPPGLGKTSLANVVANEMGAKIKITSGPAIERAGDLAAILTNLQPNDVLFIDEV-- 114

Query: 127 FHIINSIHQ-------YDSSL-LMTARTF-PVSWGVCLPD------------LCS--RLK 163
            H +N   +        D +L L+  +     S  + LP             L S  R +
Sbjct: 115 -HRLNRAVEEVLYPAMEDFALDLVVGKGPGARSLRLNLPRFTVIGATTRLALLTSPLRDR 173

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
              V ++    D  + +++ +      + I  + A  I +R   +   A +++ ++ D  
Sbjct: 174 FVAVHRLVFYSDAAMTEIVSRSARILGVPISPEGAREIGRRARGTPRIANRILRRVRDYA 233

Query: 223 ALSRGMGITRSLAAEVLKETQ 243
            +     IT ++A E L + +
Sbjct: 234 QVVANGEITLAVAREALAQLE 254


>gi|38606517|emb|CAE05991.3| OSJNBa0016O02.1 [Oryza sativa Japonica Group]
          Length = 584

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 36/203 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 331 RGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEVFVGRGAARVRDLFKEAKEAAP 390

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        ++M A   P +    L 
Sbjct: 391 SIIFIDELDAVGGSRGRSFNDERDQTLNQLLTEMDGFDSDMKVIVMAATNRPKALDPALC 450

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V + +PD +    ++     D  +  D ++   +V  +   LV A  
Sbjct: 451 RPGRFSR-----KVLVGVPDLEGRRNILAVHLRDVPLEEDPEIICDLVASLTPGLVGA-D 504

Query: 215 LVDKMDNLALSRGMGITRSLAAE 237
           L + ++  AL        ++A E
Sbjct: 505 LANIVNEAALLAARRGGNTVARE 527


>gi|17738151|ref|NP_524464.1| Tat-binding protein-1 [Drosophila melanogaster]
 gi|195503003|ref|XP_002098470.1| Tbp-1 [Drosophila yakuba]
 gi|195573226|ref|XP_002104596.1| GD21035 [Drosophila simulans]
 gi|5679018|gb|AAD46823.1|AF160882_1 GH12068p [Drosophila melanogaster]
 gi|6434948|gb|AAF08386.1|AF145305_1 26S proteasome regulatory complex subunit p50 [Drosophila
           melanogaster]
 gi|7301041|gb|AAF56177.1| Tat-binding protein-1 [Drosophila melanogaster]
 gi|194184571|gb|EDW98182.1| Tbp-1 [Drosophila yakuba]
 gi|194200523|gb|EDX14099.1| GD21035 [Drosophila simulans]
 gi|220943596|gb|ACL84341.1| Tbp-1-PA [synthetic construct]
 gi|220953566|gb|ACL89326.1| Tbp-1-PA [synthetic construct]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|71650243|ref|XP_813823.1| 26S protease regulatory subunit [Trypanosoma cruzi strain CL
           Brener]
 gi|70878744|gb|EAN91972.1| 26S protease regulatory subunit, putative [Trypanosoma cruzi]
 gi|322821227|gb|EFZ27608.1| 26S protease regulatory subunit, putative [Trypanosoma cruzi]
          Length = 398

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     +A S+    I     V+ E
Sbjct: 175 PPKGVLLYGPPGTGKTLLAKAIASNVDAAFLKVVASSIVDKYIGESARVVRE 226


>gi|71419044|ref|XP_811049.1| proteasome regulatory ATPase subunit 1 [Trypanosoma cruzi strain CL
           Brener]
 gi|71650024|ref|XP_813719.1| proteasome regulatory ATPase subunit 1 [Trypanosoma cruzi strain CL
           Brener]
 gi|70875669|gb|EAN89198.1| proteasome regulatory ATPase subunit 1, putative [Trypanosoma
           cruzi]
 gi|70878629|gb|EAN91868.1| proteasome regulatory ATPase subunit 1, putative [Trypanosoma
           cruzi]
 gi|322829818|gb|EFZ33082.1| proteasome regulatory ATPase subunit 1, putative [Trypanosoma
           cruzi]
          Length = 437

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++++ +T    I   L    I     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265


>gi|125774761|ref|XP_001358632.1| GA10280 [Drosophila pseudoobscura pseudoobscura]
 gi|195145428|ref|XP_002013695.1| GL23259 [Drosophila persimilis]
 gi|54638371|gb|EAL27773.1| GA10280 [Drosophila pseudoobscura pseudoobscura]
 gi|194102638|gb|EDW24681.1| GL23259 [Drosophila persimilis]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|330993252|ref|ZP_08317188.1| Replication-associated recombination protein A [Gluconacetobacter
           sp. SXCC-1]
 gi|329759654|gb|EGG76162.1| Replication-associated recombination protein A [Gluconacetobacter
           sp. SXCC-1]
          Length = 463

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 26/144 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
           +IL G  G GK+ +A + +D +   RF  ++     +    R     ED          T
Sbjct: 83  LILWGGPGVGKTTIARLLADAAG-LRFVQLSAVFSGVADLKR---AFEDARRTSAQGGGT 138

Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q          ++++   T      +       L SR     V+ +
Sbjct: 139 LLFVDEIHRFNRAQQDGFLPVVEDGTVVLVGATTENPSFALNSA---LLSR---CQVLVL 192

Query: 171 SLPDDDFLEKVIVKMFADRQIFID 194
              DD  +EK++ +        + 
Sbjct: 193 HRLDDAAMEKLLERAEETTGTALP 216


>gi|285018238|ref|YP_003375949.1| ATPase [Xanthomonas albilineans GPE PC73]
 gi|283473456|emb|CBA15961.1| putative atpase protein [Xanthomonas albilineans]
          Length = 457

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 21/195 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQ 125
           +IL GP G GK+ LA + +  + +  F  I+  L    +   + VL E      D   T 
Sbjct: 62  MILWGPPGCGKTTLALLLAQYADAE-FKAISAVLSG--LPDVRLVLAEAAQRFADGRRTV 118

Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           LF    H  N           +  + L + A T   S+ +    L SR +   +  +S  
Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGNILFVGATTENPSFELNSA-LLSRCRVHVLEAVSPQ 177

Query: 174 D--DDFLEKV--IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
           D  +     +    +     QI +       I    +  +  A  L++    LA   G  
Sbjct: 178 DIVEALQRALHDAERGLGAEQIQVSDAALLEIASAADGDVRRALTLLEIAAELAQDEGGE 237

Query: 230 ITRSLAAEVLKETQQ 244
           IT     +VL +  +
Sbjct: 238 ITAQTLQQVLADRTR 252


>gi|239606942|gb|EEQ83929.1| 26S protease regulatory subunit 6A [Ajellomyces dermatitidis ER-3]
          Length = 465

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 251 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 310

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 311 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 368

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 369 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 404


>gi|197334410|ref|YP_002155669.1| ATPase, AAA family [Vibrio fischeri MJ11]
 gi|197315900|gb|ACH65347.1| ATPase, AAA family [Vibrio fischeri MJ11]
          Length = 448

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 40/200 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA + ++ + +                + I K+ ++ +   R  + +
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIEKAKENQITGRRTIMFV 113

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  +   + A T   S+ +    L SR   A V K+ 
Sbjct: 114 DEVHRFNKSQQDAFLPHI-----EDGTITFIGATTENPSFELNNA-LLSR---ARVYKLK 164

Query: 172 LPDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDK 218
             + + + +VI +     DR +      +   +   +        RM  SL + E L D 
Sbjct: 165 SLEKEDIVQVIDQALLDKDRGLNDENFVLPDDVKLQLADLVSGDARM--SLNYLELLHDM 222

Query: 219 MDNLALSRGMGITRSLAAEV 238
            +  A      +   L AEV
Sbjct: 223 AEENA-QGKKVVDLPLLAEV 241


>gi|195054667|ref|XP_001994246.1| GH23603 [Drosophila grimshawi]
 gi|195112222|ref|XP_002000673.1| GI10364 [Drosophila mojavensis]
 gi|195392345|ref|XP_002054818.1| GJ22583 [Drosophila virilis]
 gi|193896116|gb|EDV94982.1| GH23603 [Drosophila grimshawi]
 gi|193917267|gb|EDW16134.1| GI10364 [Drosophila mojavensis]
 gi|194152904|gb|EDW68338.1| GJ22583 [Drosophila virilis]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|121602885|ref|YP_989024.1| recombination factor protein RarA [Bartonella bacilliformis KC583]
 gi|120615062|gb|ABM45663.1| ATPase, AAA family protein [Bartonella bacilliformis KC583]
          Length = 439

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 38/195 (19%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDID 117
            +     +I  G  G+GK+ +A + + ++     + S I   +  +    +K   +    
Sbjct: 50  AAGSLGSMIFWGAPGTGKTTVARLLALETNFAFEQVSAIFTGITEL----KKVFEVARAR 105

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T      +       L SR  
Sbjct: 106 FMSGAKTLLFVDEIHRFNRAQQDIFLPFMEDGTVVLVGATTENPSFALNAA---LLSR-- 160

Query: 164 AATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK--- 218
            A V+     DD+ L +++ +      + + +D      +++  +        LV++   
Sbjct: 161 -ARVLTFHTHDDESLRRLLKRAEELERKTLPLDDHAKDVLIRISDGDARAMLTLVEEIWC 219

Query: 219 -------MDNLALSR 226
                  ++  AL  
Sbjct: 220 ITRSGEILNAEALQE 234


>gi|71661257|ref|XP_817652.1| 26S protease regulatory subunit [Trypanosoma cruzi strain CL
           Brener]
 gi|70882857|gb|EAN95801.1| 26S protease regulatory subunit, putative [Trypanosoma cruzi]
          Length = 398

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     +A S+    I     V+ E
Sbjct: 175 PPKGVLLYGPPGTGKTLLAKAIASNVDAAFLKVVASSIVDKYIGESARVVRE 226


>gi|326403764|ref|YP_004283846.1| putative transposase-associated ATP-binding protein [Acidiphilium
           multivorum AIU301]
 gi|326404123|ref|YP_004284205.1| putative transposase-associated ATP-binding protein [Acidiphilium
           multivorum AIU301]
 gi|325050626|dbj|BAJ80964.1| putative transposase-associated ATP-binding protein [Acidiphilium
           multivorum AIU301]
 gi|325050985|dbj|BAJ81323.1| putative transposase-associated ATP-binding protein [Acidiphilium
           multivorum AIU301]
          Length = 291

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 22/109 (20%)

Query: 70  VGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPV 111
            GP G GKS LA           W        D  +  + +    +L++ +  +D    +
Sbjct: 113 FGPPGGGKSHLAAAIGLALVENGWRVLFTRTSDLVQKLQIARRELALEATIAKLDKFHLL 172

Query: 112 LLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +L+D+  +  +  +   LF +I S      SL++TA      WG   PD
Sbjct: 173 ILDDLAYVTKDQAETSVLFELI-SARYERRSLMITANQPFGEWGKVFPD 220


>gi|317180683|dbj|BAJ58469.1| recombination factor protein RarA [Helicobacter pylori F32]
          Length = 391

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 25/196 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQHTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I+     Y++     S   A  L++ +D L+      IT   
Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLD-LSAKIENPITLKT 206

Query: 235 AAEV----LKETQQCD 246
              +    L +    D
Sbjct: 207 LQSLRPHSLNDGSHSD 222


>gi|307178105|gb|EFN66932.1| Spastin [Camponotus floridanus]
          Length = 711

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 55/165 (33%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+R ++L GP G+GK+ LA   + +  +T FS  A SL S  +   + ++          
Sbjct: 469 PARGLLLFGPPGNGKTLLARAVATQCHATFFSISAASLTSKYVGEGEKLVRALFAIAREL 528

Query: 113 ------LEDIDLLDFNDTQLFHIINS--------------IHQYDSSLLMTARTFPVSWG 152
                 ++++D L        H  +                +  +  L+M A   P    
Sbjct: 529 QPSVIFIDEVDSLLSERKDNEHEASRRLKTEFLVEFDGLPCNPEERVLVMAATNRPQELD 588

Query: 153 ------------VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
                       V LPDL +R+               L++++ K 
Sbjct: 589 EAALRRFTKRVYVTLPDLQTRI-------------VLLQRLLAKH 620


>gi|301774052|ref|XP_002922441.1| PREDICTED: nuclear valosin-containing protein-like [Ailuropoda
           melanoleuca]
          Length = 849

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LAN  + +         A  +                +  + +
Sbjct: 290 PPRGVLLHGPPGCGKTLLANAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSN 349

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++ +    L++ A   P + 
Sbjct: 350 APCVLFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNTMAETAQVLVIGATNRPDAL 409

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 410 DPALR------RAGRFDREICLGIPDEASRERILRTLC--RKLRLPES 449


>gi|227509636|ref|ZP_03939685.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190998|gb|EEI71065.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 441

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF- 121
             +I  GP GSGK+ LA I + K+++    FS +   +  I    +      D+      
Sbjct: 52  PSMIFWGPPGSGKTTLAEIIAKKTKAKFVTFSAVTSGIRDIRKLMKDAEANRDMGGKTIV 111

Query: 122 --NDTQLFHIINSIHQY 136
             ++    H  N   Q 
Sbjct: 112 FVDEI---HRFNKAQQD 125


>gi|237839317|ref|XP_002368956.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii
          ME49]
 gi|211966620|gb|EEB01816.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii
          ME49]
          Length = 746

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87
          P + V+L GP GSGK+ LA   +++
Sbjct: 43 PPKGVLLYGPPGSGKTHLARALAEE 67


>gi|195331393|ref|XP_002032387.1| GM26527 [Drosophila sechellia]
 gi|194121330|gb|EDW43373.1| GM26527 [Drosophila sechellia]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|194910264|ref|XP_001982101.1| GG11226 [Drosophila erecta]
 gi|190656739|gb|EDV53971.1| GG11226 [Drosophila erecta]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|116328835|ref|YP_798555.1| recombination factor protein RarA [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331744|ref|YP_801462.1| recombination factor protein RarA [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121579|gb|ABJ79622.1| Holliday junction resolvase helicase subunit-like ATPase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116125433|gb|ABJ76704.1| Holliday junction resolvase helicase subunit-like ATPase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 423

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 18/128 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G+GKS LA I   K         + ST  S I K L+    +    + L++I 
Sbjct: 44  IILYGPPGTGKSTLAGILCRKWNLPFVEYNAVSTGVSEIKKLLERAEREGTILLFLDEIH 103

Query: 118 LL-DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
                    L        +    +L+ A T   ++ +  P L SR     ++KI     +
Sbjct: 104 RFSASQQDSLL----KGVETGHLVLIGATTENPAFRITRP-LLSR---CQILKIEPLSWE 155

Query: 177 FLEKVIVK 184
               ++ +
Sbjct: 156 EQSLLLER 163


>gi|37589162|gb|AAH58744.1| Wrnip1 protein [Mus musculus]
          Length = 526

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 123 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 177

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 178 SFFKRKTILFIDEIHRFNKSQQD 200


>gi|268530368|ref|XP_002630310.1| Hypothetical protein CBG00746 [Caenorhabditis briggsae]
 gi|187038824|emb|CAP21912.1| hypothetical protein CBG_00746 [Caenorhabditis briggsae AF16]
          Length = 811

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+      +
Sbjct: 242 PPRGILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKN 301

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 302 SPAILFIDEIDAIAPKREKAHGEVEKRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGA 361

Query: 155 L 155
           L
Sbjct: 362 L 362



 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 515 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 571


>gi|327284728|ref|XP_003227088.1| PREDICTED: ATPase family AAA domain-containing protein 1-A-like
           [Anolis carolinensis]
          Length = 362

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R V+L GP G GK+ LA   +  S     +  A +L  
Sbjct: 129 PPRGVLLYGPPGCGKTLLAKAIAQASGCRFINLQASTLTD 168


>gi|326336426|ref|ZP_08202596.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691299|gb|EGD33268.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 32/140 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I  GP G+GK+ LA I + + + T FS  A S     +         DI      + 
Sbjct: 42  PSLIFWGPPGTGKTTLAYIIAKEGQRTFFSLSAISSGIKEVR--------DIIEKSKREQ 93

Query: 125 QLF------------HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
            LF            H  N           +     L+ A T   S+ V +P L SR   
Sbjct: 94  GLFTPKNPIIFIDEIHRFNKTQQDSLLEAVERGWVTLIGATTENPSFEV-IPALLSR--- 149

Query: 165 ATVVKISLPDDDFLEKVIVK 184
             V  +     + L  ++ +
Sbjct: 150 CQVYTLHPFTKEDLLALLHR 169


>gi|259046674|ref|ZP_05737075.1| ATPase, AAA family domain protein [Granulicatella adiacens ATCC
           49175]
 gi|259036839|gb|EEW38094.1| ATPase, AAA family domain protein [Granulicatella adiacens ATCC
           49175]
          Length = 423

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 24/172 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  S  ++    + +    +   + I   +        +LL++I 
Sbjct: 43  MILYGPPGTGKTSIASAISGSTKVSFRQLNAATDTKKDLQIVAEEAKMSGSVILLLDEIH 102

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L HI N        +L+ A T      +  P + SR     + ++     
Sbjct: 103 RLDKTKQDFLLPHIEN-----GRIILVGATTENPYISIN-PAIRSR---TQIFELKPLSP 153

Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLA 223
           + + K +V    D  R +  +D  ++   +     S        ++ ++  A
Sbjct: 154 EDIIKALVNAIEDEERGLGKLDLDVSEEALNHFASSTNGDVRSALNALELAA 205


>gi|225620542|ref|YP_002721799.1| Holliday junction resolvase helicase subunit-like ATPase
           [Brachyspira hyodysenteriae WA1]
 gi|225215361|gb|ACN84095.1| Holliday junction resolvase helicase subunit-like ATPase
           [Brachyspira hyodysenteriae WA1]
          Length = 431

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 78/201 (38%), Gaps = 32/201 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G GKS +A+I + K++S      A   +  + + R+ +   + +L +   T L
Sbjct: 51  MVFFGPPGVGKSTVASIIAKKTKSEYIKLNAVLSN--VSEIREAIKKAEKNLENRKKTIL 108

Query: 127 F----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           F    H  N   Q        + S+++   T    +      L SR+    + +    DD
Sbjct: 109 FIDEIHRFNKSQQDALLPAVENGSIILIGSTTLNPYFYLNNALLSRI---MLFEFRNLDD 165

Query: 176 DFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS---- 225
           + +++ ++K   D R +      ++ +    IV+    S     K    ++   L+    
Sbjct: 166 NDIKEAVLKAIEDKRGLGEYDVDVEDEAVNLIVRY---SHGDVRKAFTYLEASYLATQID 222

Query: 226 ---RGMGITRSLAAEVLKETQ 243
                + IT  +  +V  +  
Sbjct: 223 ESKEKLTITEEIVRDVTSKQS 243


>gi|186478078|ref|NP_001117220.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 1224

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 27/141 (19%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDTRKPVLLEDIDL 118
            P++ ++L GP G+GK+ LA   + ++ +       S+I   +DS+L     P   E +  
Sbjct: 984  PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENPGEHEAM-R 1042

Query: 119  LDFNDTQLFHIIN----SIHQYDSSLLMTA------------RTFPVSWGVCLPDL--CS 160
               N+   F +IN         +  L++ A            R  P    V LPD    S
Sbjct: 1043 KMKNE---F-MINWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSANRS 1098

Query: 161  RLKAATVVKISLPDDDFLEKV 181
            ++ +  + K  + +D  LE +
Sbjct: 1099 KILSVILAKEEMAEDVDLEAI 1119


>gi|70606665|ref|YP_255535.1| hypothetical protein Saci_0877 [Sulfolobus acidocaldarius DSM 639]
 gi|30088860|gb|AAP13476.1| AAA family ATPase [Sulfolobus acidocaldarius]
 gi|68567313|gb|AAY80242.1| hypothetical protein Saci_0877 [Sulfolobus acidocaldarius DSM 639]
          Length = 591

 Score = 43.2 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 77/194 (39%), Gaps = 39/194 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + ++L GP G+GK+ +A   +++ +++        + S+       ++          
Sbjct: 365 PVKGILLYGPPGTGKTSIAKALANELQASFIVVSGDEISSVGPFKAGELIAEKFHIAKDN 424

Query: 113 ------LEDIDLLD---------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                 +++ID++             T+L   ++ I + +  +++ A   P      L  
Sbjct: 425 SPSIIFIDEIDMIARTRGENEWRGALTELLSEMDGIRENEDVIIIGATNRPWDLDPAL-- 482

Query: 158 LCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL--VFA 212
               L+A     ++ +  PD +   KV+  +   + + +D+++    V RM  +      
Sbjct: 483 ----LRAGRFDRIIYVPPPDYEGRVKVLKVLT--KGLSVDEEILN-KVSRMTNNYTPADL 535

Query: 213 EKLVDKMDNLALSR 226
           + +VD++    L  
Sbjct: 536 KLVVDEIRRNLLKE 549


>gi|332189372|gb|AEE27493.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
          Length = 1218

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 27/141 (19%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDTRKPVLLEDIDL 118
            P++ ++L GP G+GK+ LA   + ++ +       S+I   +DS+L     P   E +  
Sbjct: 978  PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENPGEHEAM-R 1036

Query: 119  LDFNDTQLFHIIN----SIHQYDSSLLMTA------------RTFPVSWGVCLPDL--CS 160
               N+   F +IN         +  L++ A            R  P    V LPD    S
Sbjct: 1037 KMKNE---F-MINWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSANRS 1092

Query: 161  RLKAATVVKISLPDDDFLEKV 181
            ++ +  + K  + +D  LE +
Sbjct: 1093 KILSVILAKEEMAEDVDLEAI 1113


>gi|329939451|ref|ZP_08288787.1| cell division protein ftsH-like protein [Streptomyces
           griseoaurantiacus M045]
 gi|329301680|gb|EGG45574.1| cell division protein ftsH-like protein [Streptomyces
           griseoaurantiacus M045]
          Length = 676

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 205 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 264

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 265 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 324

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P   D  L  V  +        +   L  
Sbjct: 325 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLSAVARRTPGFTGADLSNVLNE 384

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R +R L+  + L + +D 
Sbjct: 385 AALLTARSDRKLIDNQMLDEAIDR 408


>gi|229550919|ref|ZP_04439644.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1]
 gi|258538369|ref|YP_003172868.1| recombination factor protein RarA [Lactobacillus rhamnosus Lc 705]
 gi|229315744|gb|EEN81717.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1]
 gi|257150045|emb|CAR89017.1| AAA ATPase [Lactobacillus rhamnosus Lc 705]
          Length = 448

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 21/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +I  GP G GK+ LA I + ++++    FS +   +  I            +  +  V +
Sbjct: 51  MIFWGPPGVGKTTLARIIARRTQAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 110

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ V    L SR +   V  +   
Sbjct: 111 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 163

Query: 174 DDDFLEKVIVKMFAD-RQ 190
               L  ++ +   D R 
Sbjct: 164 TSAELVDLLQRALKDPRG 181


>gi|255284508|ref|ZP_05349063.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
 gi|255264944|gb|EET58149.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
          Length = 438

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 34/177 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +I  GP G+GK+ LA + ++ + +            K ++ ++   +  +       +
Sbjct: 53  GSLIFYGPPGTGKTTLAKVIANTTSADFKQINATVAGKKDMEDVVKAAKDSL------GM 106

Query: 120 DFNDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
               T LF    H  N           +  + +L+ A T    + V    L SR   + V
Sbjct: 107 YGKKTILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNSA-LISR---SVV 162

Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
            ++     + +  +I +   D  R +      ID     ++    +     A   V+
Sbjct: 163 FELKPLSKEDICTLIDRAINDKERGMGNYNAVIDGDAKDFLADVADGDARAALNAVE 219


>gi|152987484|ref|YP_001347959.1| recombination factor protein RarA [Pseudomonas aeruginosa PA7]
 gi|150962642|gb|ABR84667.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 441

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  I+  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAQVSDAH-FETISAVLSGVKEIRQAVEVAKQH 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVI------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++       K    R + + ++    ++   +       +L+
Sbjct: 155 --ARVYVLKSLDETALRKLVGRALNEEKGLGKRNLSLPEESFQVLLAAAD---GDGRRLL 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N A L+  G  I+  L   +L +T++
Sbjct: 210 NLLENAADLAEDGSEISPELLQNLLGDTRR 239


>gi|66509032|ref|XP_623527.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Apis
           mellifera]
          Length = 440

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 45/206 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146
                 +++ID +                  +  ++N +     + D  ++M        
Sbjct: 278 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVVMATNRIETL 337

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          ++  LPD+    ++     +   +  D  LA  I+ + +
Sbjct: 338 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFSIHTSRMTLAPDVNLAELIMAKDD 389

Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231
            S    + +  +   +AL      +T
Sbjct: 390 LSGADIKAICTEAGLMALRERRMKVT 415


>gi|269114959|ref|YP_003302722.1| holliday junction DNA helicase ruvB [Mycoplasma hominis]
 gi|268322584|emb|CAX37319.1| Holliday junction DNA helicase ruvB [Mycoplasma hominis ATCC 23114]
          Length = 317

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 36/189 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSIL-----IDTRKPVLLEDIDL 118
           ++  GP G GK+ LA I S +++S        + +    +L     I+    + +++I  
Sbjct: 40  LLFYGPPGLGKTTLAKIISKETKSNIVYVQGPLIEKKSDVLTIFSSINDNDIIFIDEIHG 99

Query: 119 LDFNDTQLFHIINSIHQYD--------------------SSLLMTARTFPVSWGVCLPDL 158
           ++ N  +LF+   S  +                         L+ A T        L D 
Sbjct: 100 INKNIEELFY---SALEEGTIDVALGVDGDKKIMRMKLKKFCLIAATTKINLLSKPLKD- 155

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
               +   + K+S   D  + K+I       +I I      +I     ++   A  L+ +
Sbjct: 156 ----RFGYIGKLSDYSDLEIAKIIFNSATKNKIKIKNDAINFIAIHSRQTPRVANTLLKR 211

Query: 219 MDNLALSRG 227
           +++ A+   
Sbjct: 212 VNDFAIYYK 220


>gi|157129681|ref|XP_001655453.1| 26S protease regulatory subunit 6a [Aedes aegypti]
 gi|108882054|gb|EAT46279.1| 26S protease regulatory subunit 6a [Aedes aegypti]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 59/167 (35%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +          ++ A       
Sbjct: 268 SPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 327

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++   P+++   +++      R++ +   +
Sbjct: 328 DPAL--LRSGRLD--RKIEFPHPNEEARARIMQ--IHSRKMNVSPDV 368


>gi|332246191|ref|XP_003272236.1| PREDICTED: ATPase WRNIP1 isoform 1 [Nomascus leucogenys]
          Length = 638

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 289

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 290 SFFKRKTILFIDEIHRFNKSQQD 312


>gi|325959942|ref|YP_004291408.1| proteasome-activating nucleotidase [Methanobacterium sp. AL-21]
 gi|325331374|gb|ADZ10436.1| Proteasome-activating nucleotidase [Methanobacterium sp. AL-21]
          Length = 410

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + V+L GP G+GK+ LA   + ++ +T    +A       I     ++
Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVKKYIGEGARLV 233


>gi|296197529|ref|XP_002746322.1| PREDICTED: ATPase WRNIP1-like isoform 1 [Callithrix jacchus]
          Length = 666

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 263 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 317

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 318 SFFKRKTILFIDEIHRFNKSQQD 340


>gi|289192286|ref|YP_003458227.1| 26S proteasome subunit P45 family [Methanocaldococcus sp. FS406-22]
 gi|288938736|gb|ADC69491.1| 26S proteasome subunit P45 family [Methanocaldococcus sp. FS406-22]
          Length = 430

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ LA   + ++ +T    +   L    I     ++ +
Sbjct: 203 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKD 254


>gi|256810123|ref|YP_003127492.1| 26S proteasome subunit P45 family [Methanocaldococcus fervens AG86]
 gi|256793323|gb|ACV23992.1| 26S proteasome subunit P45 family [Methanocaldococcus fervens AG86]
          Length = 430

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ LA   + ++ +T    +   L    I     ++ +
Sbjct: 203 PPKGILLYGPPGTGKTLLAKAVARETNATFIRVVGSELVKKFIGEGATLVKD 254


>gi|254573216|ref|XP_002493717.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
 gi|238033516|emb|CAY71538.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
 gi|328354458|emb|CCA40855.1| 26S protease regulatory subunit 6A [Pichia pastoris CBS 7435]
          Length = 423

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  ++ GP G+GK+ LA   + +S +T     A  L  + I     ++ +
Sbjct: 203 PPKGALMYGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRD 254


>gi|195449908|ref|XP_002072279.1| GK22416 [Drosophila willistoni]
 gi|194168364|gb|EDW83265.1| GK22416 [Drosophila willistoni]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|160878660|ref|YP_001557628.1| recombination factor protein RarA [Clostridium phytofermentans
           ISDg]
 gi|160427326|gb|ABX40889.1| AAA ATPase central domain protein [Clostridium phytofermentans
           ISDg]
          Length = 444

 Score = 43.2 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 75/205 (36%), Gaps = 39/205 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
             VI  GP G+GK+ LA + ++ +     SN  +   +         ++E          
Sbjct: 53  GSVIFYGPPGTGKTTLAKVIANTTS----SNFQQINATSAGKKDMEAVIEQAKQTLGMYG 108

Query: 122 NDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + +L+ A T    + V    L SR   + V +
Sbjct: 109 KKTILFVDEIHRFNKGQQDYLLPFVEDGTIVLVGATTENPYFEVNSA-LISR---SIVFE 164

Query: 170 ISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   + + +++++++   D  + +      ++     ++          A   ++ ++  
Sbjct: 165 LKPLEQNDIKELLIRAITDKEKGLGAYHAVMEDDALDFLANAAN---GDARSALNAIELG 221

Query: 223 ALSRGMG------ITRSLAAEVLKE 241
            L+          IT  +A+E +++
Sbjct: 222 VLTTKRSEDGFIHITLEVASECIQK 246


>gi|325954336|ref|YP_004237996.1| ATPase AAA [Weeksella virosa DSM 16922]
 gi|323436954|gb|ADX67418.1| AAA ATPase central domain protein [Weeksella virosa DSM 16922]
          Length = 424

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 22/140 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT--RKPVLLEDIDLL 119
           +I  GP G+GK+ LA + ++ S       +  +   K +  ++     +     E   +L
Sbjct: 42  MIFWGPPGTGKTTLAQLIAELSNRPFYTLSAINAGVKDVREVIDKAKSQNLFTTEKNPIL 101

Query: 120 DFNDTQLFHIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
             ++    H  N        S  +     L+ A T   S+ V  P L SR   A V  + 
Sbjct: 102 FIDEI---HRFNKSQQDSLLSAVEKGYITLIGATTENPSFEVV-PALLSR---AQVYTLH 154

Query: 172 LPDDDFLEKVIVKMFADRQI 191
               + LE ++ +   +  +
Sbjct: 155 ALVKEDLEDLLFRAIQEDNL 174


>gi|315645809|ref|ZP_07898930.1| AAA ATPase central domain protein [Paenibacillus vortex V453]
 gi|315278570|gb|EFU41884.1| AAA ATPase central domain protein [Paenibacillus vortex V453]
          Length = 435

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 68/182 (37%), Gaps = 35/182 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDID---LLDF 121
           ++L GP G GK+ LA+I S +++    R + +  S+  +        ++E       L  
Sbjct: 54  ILLYGPPGCGKTTLAHIISQQTKGHFVRLNAVEASVKDVRE------VIEQAQSNRSLYG 107

Query: 122 NDTQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
             T LF    H  NS  Q        + +++    T    +      L SR   +T+ ++
Sbjct: 108 TKTILFLDEVHRFNSSRQDALLPAVENGTIIFIGATTENPFHYVNGALMSR---STLFQL 164

Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                +     + +  AD+        +  +++   +I            + ++ ++  A
Sbjct: 165 QPLTKEHSMIAMQRALADQDKGLGFMDLRAEEEALDHIATMAN---GDIRRALNALELAA 221

Query: 224 LS 225
           ++
Sbjct: 222 MT 223


>gi|300023015|ref|YP_003755626.1| ATPase AAA [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524836|gb|ADJ23305.1| AAA ATPase central domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 439

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +I  GP GSGK+ +A + ++++     + S I   +  +     +  ++         
Sbjct: 53  PSLIFWGPPGSGKTTIARLLANETNLNFEQLSAIFSGVADLRKAFERAKIM----REQGK 108

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  +  L+ A T   S+ +    L SR   A+V+ +
Sbjct: 109 GTLLFIDEIHRFNRSQQDSFLPYMEDGTITLVGATTENPSFELNAAVL-SR---ASVLVL 164

Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +  DD  LE ++ +  AD  R + +D      +    +        L + +       G 
Sbjct: 165 NRLDDATLETLLQRAEADVGRPLPLDADAREALKGMADGDGRAILNLAEDVFAAVAPSGK 224

Query: 229 GITR-SLAA 236
            +TR +L  
Sbjct: 225 ALTRDALVK 233


>gi|157964609|ref|YP_001499433.1| transposase [Rickettsia massiliae MTU5]
 gi|157844385|gb|ABV84886.1| Transposase and inactivated derivative [Rickettsia massiliae MTU5]
          Length = 253

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 24/114 (21%)

Query: 61  SWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104
           +W  R   +++ GPSG GKS LA              +  S   ++              
Sbjct: 96  AWIKRSENLLIFGPSGVGKSHLAAAIGYALVEKHVKVLFISTTKLVQLLQAARKEYRLPN 155

Query: 105 ----IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSW 151
               +D    ++L+DI  +  ++ +   LF +I   ++   S+++TA      W
Sbjct: 156 ELTKLDKYDVIILDDIGYVRKDEGETHVLFELIAQRYESG-SMIVTANQPFSEW 208


>gi|145500528|ref|XP_001436247.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403386|emb|CAK68850.1| unnamed protein product [Paramecium tetraurelia]
          Length = 652

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           ++LVGP GSGK+ LA   + ++  + F       D + +    
Sbjct: 257 ILLVGPPGSGKTLLARALAGEAGCSFFQKSGSEFDEMFVGVGA 299


>gi|74147276|dbj|BAE27531.1| unnamed protein product [Mus musculus]
          Length = 433

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL SR     + KI                  R + +++ +
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLESR---THIFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 369 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403


>gi|327350588|gb|EGE79445.1| 26S protease regulatory subunit 6A [Ajellomyces dermatitidis ATCC
           18188]
          Length = 465

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 251 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 310

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 311 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 368

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 369 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 404


>gi|301632691|ref|XP_002945415.1| PREDICTED: replication-associated recombination protein A-like
           [Xenopus (Silurana) tropicalis]
          Length = 435

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 78/197 (39%), Gaps = 30/197 (15%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112
           IL GP G GK+ +A + ++   +   S                +A+     L   R  V 
Sbjct: 50  ILWGPPGVGKTTIARLMAEAFDAQFISISAVLGGVKDIRDAVQLAERARDGLAPQRTIVF 109

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR   ATV  +  
Sbjct: 110 VDEVHRFNKSQQDAFLPH---VESGLFTFVGATTENPSFEVNSA-LLSR---ATVYVLQP 162

Query: 173 PDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-- 229
              D L++++ K  A + +  I+ +    +V   +     A +L++ ++ L+++ G    
Sbjct: 163 LAADDLKQIVAKAQALQALPAIENEALERLVAYAD---GDARRLLNTLETLSVTAGQAQL 219

Query: 230 --ITRSLAAEVLKETQQ 244
             +T +   +VL E  +
Sbjct: 220 ATLTDAWLLQVLGERMR 236


>gi|210076057|ref|XP_505704.2| YALI0F21329p [Yarrowia lipolytica]
 gi|199424971|emb|CAG78513.2| YALI0F21329p [Yarrowia lipolytica]
          Length = 845

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 36/164 (21%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSIL 104
             P  V+ L GP G GK+ LA   + ++ +   S                 I +  +   
Sbjct: 600 DAPGGVL-LWGPPGCGKTLLAKAVASETAANFISVRGPELLNKYVGESERAIRQVFERAA 658

Query: 105 IDTRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           + +   +  ++ D L    +D            L   +N + +     ++ A   P    
Sbjct: 659 LSSPCIIFFDEFDSLAPRRDDGGSEHSSRLVNTLLTELNGLTERRGVYVIAATNRPDIID 718

Query: 153 --VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
             +  P    RL     V +  PD++   +++ K+   R +  D
Sbjct: 719 PAMVRP---GRLDKTLFVGL--PDENERFEILSKVCRKRPLAAD 757


>gi|156846683|ref|XP_001646228.1| hypothetical protein Kpol_1013p42 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116902|gb|EDO18370.1| hypothetical protein Kpol_1013p42 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 430

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 44/153 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 159 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSISSSDLVSKWMGESERLVKQLFNMAREN 218

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152
                 ++++D L                T+L   +N + +     L++ A   P     
Sbjct: 219 KPSIIFIDEVDALTGQRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 278

Query: 153 -----------VCLPDLCSRLKAATVVKISLPD 174
                      + LPDL +R K   + +I++ D
Sbjct: 279 AIRRRFERRIYIPLPDLAARTK---MFEINVAD 308


>gi|149240319|ref|XP_001526035.1| hypothetical protein LELG_02593 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450158|gb|EDK44414.1| hypothetical protein LELG_02593 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 516

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 17/128 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------LE 114
             ++L+GP GSGK+ LA + +        + I  S  ++  +  K ++          ++
Sbjct: 57  PSMLLIGPPGSGKTTLARLVAKSCGYATSNIIELSATTLTTENIKNLVNDCQEQLVVFID 116

Query: 115 DIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +I  L       L        +    +L+ A T           + SR +   + ++   
Sbjct: 117 EIHRLSKVQQDWLL----PFVEDGKIVLIGATTLETPLRRIRKAILSRCQVFPLQRLH-- 170

Query: 174 DDDFLEKV 181
           DD+ L  +
Sbjct: 171 DDELLSVL 178


>gi|126662272|ref|ZP_01733271.1| ATPase, AAA family protein [Flavobacteria bacterium BAL38]
 gi|126625651|gb|EAZ96340.1| ATPase, AAA family protein [Flavobacteria bacterium BAL38]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +IL GP G+GK+ LA I + +S+                      AK    +      
Sbjct: 40  PSLILWGPPGTGKTTLAQIMAQESKRPFYQLSAIHSGVKDIREVIEKAKQSSGLFTAKNP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L     +  +     L+ A T   S+ V +P L SR     V 
Sbjct: 100 ILFIDEIHRFSKSQQDSLL----AAVEKGWITLIGATTENPSFEV-IPALLSR---CQVY 151

Query: 169 KISLPDDDFLEKVIVK 184
            ++    D LE ++ +
Sbjct: 152 VLNAFTKDDLEALLHR 167


>gi|313207354|ref|YP_004046531.1| AAA ATPase central domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312446670|gb|ADQ83025.1| AAA ATPase central domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315023249|gb|EFT36259.1| ATPase, AAA family protein [Riemerella anatipestifer RA-YM]
 gi|325335187|gb|ADZ11461.1| the helicase subunit-like protein of the Holliday junction
           resolvase [Riemerella anatipestifer RA-GD]
          Length = 425

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 23/132 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDF 121
             +IL GP G+GK+ LA I S++S    F   A S     +      +++D     L   
Sbjct: 42  NSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVKEVRE----VIDDAKKQHLFSG 97

Query: 122 NDTQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
               LF    H  N           +    +L+ A T   S+ V    L SR   + V  
Sbjct: 98  KSPILFIDEIHRFNKSQQDSLLHAVEKGWVILIGATTENPSFEVVSA-LLSR---SQVYI 153

Query: 170 ISLPDDDFLEKV 181
           +     + LE++
Sbjct: 154 LKPLSYEKLEEL 165


>gi|312380412|gb|EFR26411.1| hypothetical protein AND_07557 [Anopheles darlingi]
          Length = 429

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 209 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 268

Query: 113 ------LEDIDLL---------DFNDTQ---LFHIINS---IHQYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N        D   ++ A       
Sbjct: 269 APTIIFIDELDAIGTKRFDSEKAGDREAQRTMLELLNQMDGFSSADDIKVIAATNRVDIL 328

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++   P++    +V+      R++ +   +
Sbjct: 329 DPAL--LRSGRLD--RKIEFPHPNEQARARVMQ--IHSRKMNVSPDV 369


>gi|307108607|gb|EFN56847.1| hypothetical protein CHLNCDRAFT_51635 [Chlorella variabilis]
          Length = 694

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 43/172 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------D 106
           P   V+LVGP G+GK+ LA   + ++    FS  A     + +                +
Sbjct: 182 PPSGVLLVGPPGTGKTLLARAVAGEADVPFFSIAASEFVELYVGMGAMRVRELFATARKE 241

Query: 107 TRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMT-----------------ARTFP 148
               V +++ID +    D++L  + N   +   + L+T                 A   P
Sbjct: 242 APAIVFIDEIDAVAKGRDSRLRSVGNDEREQTLNQLLTELDGFDTHRDNLVICIAATNRP 301

Query: 149 VSWGVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 L      L+       V +  PD    E+++      R + + + +
Sbjct: 302 DVLDAAL------LRPGRFDRRVSVERPDKQGREEILRVHINQRGLPLGEDV 347


>gi|170062088|ref|XP_001866517.1| 26S protease regulatory subunit 6A [Culex quinquefasciatus]
 gi|167880127|gb|EDS43510.1| 26S protease regulatory subunit 6A [Culex quinquefasciatus]
          Length = 428

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 59/167 (35%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +          ++ A       
Sbjct: 268 SPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 327

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++   P+++   +++      R++ +   +
Sbjct: 328 DPAL--LRSGRLD--RKIEFPHPNEEARARIMQ--IHSRKMNVSPDV 368


>gi|88797458|ref|ZP_01113047.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase
           component [Reinekea sp. MED297]
 gi|88779630|gb|EAR10816.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase
           component [Reinekea sp. MED297]
          Length = 330

 Score = 43.2 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 13/85 (15%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           D +  +   +AV  + S    P   + L G SG GKS LA   S+   +           
Sbjct: 17  DYVTDTGNARAVNQV-SLEIRPGETLGLAGESGCGKSTLAFAISNLHNA----------- 64

Query: 102 SILIDTRKPVLLEDIDLLDFNDTQL 126
              + +   +L ED D+L  ND QL
Sbjct: 65  -PALISEGEILFEDRDVLKMNDEQL 88


>gi|314938563|ref|ZP_07845847.1| recombination factor protein RarA [Enterococcus faecium TX0133a04]
 gi|314940908|ref|ZP_07847814.1| recombination factor protein RarA [Enterococcus faecium TX0133C]
 gi|314948071|ref|ZP_07851473.1| recombination factor protein RarA [Enterococcus faecium TX0082]
 gi|314952045|ref|ZP_07855068.1| recombination factor protein RarA [Enterococcus faecium TX0133A]
 gi|314991926|ref|ZP_07857381.1| recombination factor protein RarA [Enterococcus faecium TX0133B]
 gi|314995184|ref|ZP_07860298.1| recombination factor protein RarA [Enterococcus faecium TX0133a01]
 gi|313590593|gb|EFR69438.1| recombination factor protein RarA [Enterococcus faecium TX0133a01]
 gi|313593510|gb|EFR72355.1| recombination factor protein RarA [Enterococcus faecium TX0133B]
 gi|313595835|gb|EFR74680.1| recombination factor protein RarA [Enterococcus faecium TX0133A]
 gi|313600266|gb|EFR79109.1| recombination factor protein RarA [Enterococcus faecium TX0133C]
 gi|313642120|gb|EFS06700.1| recombination factor protein RarA [Enterococcus faecium TX0133a04]
 gi|313645487|gb|EFS10067.1| recombination factor protein RarA [Enterococcus faecium TX0082]
          Length = 459

 Score = 43.2 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 32/178 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL+++ 
Sbjct: 73  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 132

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++    +
Sbjct: 133 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 183

Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225
             ++  +     D  R +      +D+      +  + R+        ++ ++   LS
Sbjct: 184 QDIQLAVEHALRDKERGLGQQAIQLDEDA----LLHLSRATNGDLRSALNGLELATLS 237


>gi|312868564|ref|ZP_07728759.1| ABC transporter, ATP-binding protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095861|gb|EFQ54110.1| ABC transporter, ATP-binding protein [Lactobacillus oris
           PB013-T2-3]
          Length = 251

 Score = 43.2 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 16/111 (14%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V ++G SG+GKS L NI +   ++T  S +    D   +           D   F    
Sbjct: 36  YVAIMGESGAGKSTLLNIIATLDKATNGSAVLNGQDLGELGKD--------DAARFRREH 87

Query: 126 L---FHIINSI----HQYDSSL-LMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L   F   N +    ++ +  L L+ A+T P      +  L SRL+ A ++
Sbjct: 88  LGFVFQRFNLLDSLSNRDNIYLPLVLAKTKPAEMERRVKPLASRLRIAPII 138


>gi|291287827|ref|YP_003504643.1| AAA ATPase central domain protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884987|gb|ADD68687.1| AAA ATPase central domain protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 426

 Score = 43.2 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 20/136 (14%)

Query: 67  VILVGPSGSGKSCLANI--------WSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDI 116
           V+LVGP G+GK+ LA I        +     +T  S   K +        K VL  ++++
Sbjct: 40  VVLVGPPGTGKTTLAEIIGKHLNMPYFSLHAATAGSGDLKQIMESARHAGKTVLVFVDEL 99

Query: 117 DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
              +     L  ++N I    + L+  +   P    +  P L SR   + V ++   +  
Sbjct: 100 HRFNKTQQVL--LLNMIDSGLAKLIGASTENPYH-NLIQP-LRSR---SFVFRLERLEKP 152

Query: 177 FLEKVIVK---MFADR 189
            L+++  K    F +R
Sbjct: 153 DLKELFEKVKLYFKER 168


>gi|303273578|ref|XP_003056149.1| cell division cycle protein 48 [Micromonas pusilla CCMP1545]
 gi|226462233|gb|EEH59525.1| cell division cycle protein 48 [Micromonas pusilla CCMP1545]
          Length = 823

 Score = 43.2 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 242 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 301

Query: 107 TRKPVLLEDIDLLD 120
               + +++ID + 
Sbjct: 302 APAIIFIDEIDSIA 315



 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 515 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 571


>gi|116620085|ref|YP_822241.1| Holliday junction DNA helicase RuvB [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255536|sp|Q02AG6|RUVB_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|116223247|gb|ABJ81956.1| Holliday junction DNA helicase subunit RuvB [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 344

 Score = 43.2 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 25/197 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           V+L GP G GK+ LA+I +++        S       +  +     I   +   +++I  
Sbjct: 57  VLLYGPPGLGKTTLASIIAEELQVQFTPTSGPVLQKKLDLTGILSNIRLHQVFFIDEIHR 116

Query: 119 LDFN-DTQLFHIINSIH----------QYDSSLLM---TARTFPVSWGVCLPDLCSRLKA 164
           L  + +  L+  +                  SL M   TA       G+    L  R   
Sbjct: 117 LLPDVEEMLYSALEDFRVDILVGVGPGARTHSLPMPKFTAIGATTRQGLVSAPLRGRF-- 174

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223
             V+++   + + L+ ++ +      + I+   A  I +R   +   A +L+ ++ D   
Sbjct: 175 GLVLRLDPYNTEELKAIVKRSARLLTVEIEDGAAEEIARRCRGTPRIANRLLRRVRDYAQ 234

Query: 224 LSRGMGITRSLAAEVLK 240
           +     I + +A   L 
Sbjct: 235 VRADGRINQKVAQTALN 251


>gi|304385275|ref|ZP_07367620.1| AAA family ATPase [Pediococcus acidilactici DSM 20284]
 gi|304328482|gb|EFL95703.1| AAA family ATPase [Pediococcus acidilactici DSM 20284]
          Length = 425

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 27/169 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 41  MILYGPPGTGKTSIASAIAGSTKYAFRMLNAATDSKKQLQIVAEEAKMSGTVVLLLDEIH 100

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++     
Sbjct: 101 RLDKTKQDFLLPHL-----ESGQIILIGATTENPYININ-PAIRSR---TQIFEVKPLTP 151

Query: 176 DFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVD 217
             +++ +     D Q       + +D+    ++ +     L  A   V+
Sbjct: 152 ADIKEAVEMALQDSQRGLGDLPLQMDENALQFVSKATGGDLRSALNAVE 200


>gi|291224570|ref|XP_002732276.1| PREDICTED: spastin-like [Saccoglossus kowalevskii]
          Length = 574

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 69/170 (40%), Gaps = 37/170 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A +L S  +   + ++          
Sbjct: 331 PARGLLLFGPPGNGKTLLAKAVAHESNATFFNISASTLTSKYVGEGEKLVRAMFAVAREL 390

Query: 113 ------LEDIDLLDFNDTQLFH----------IIN----SIHQYDSSLLMTARTFPVSWG 152
                 +++ID L     +  H          ++       +  D  L+M A   P    
Sbjct: 391 QPSIVFIDEIDSLLCERREGEHEASRRLKTEFLLEFDGVHANSDDRLLVMGATNRPQELD 450

Query: 153 VCLPDLCSRLKAAT-VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
             +      L+     V +S+PD    +++I ++ +  Q  + ++   ++
Sbjct: 451 DAV------LRRFPKRVYVSVPDKQARKQLIRQLLSKHQNPLSERELEHL 494


>gi|260437226|ref|ZP_05791042.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876]
 gi|292810539|gb|EFF69744.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876]
          Length = 446

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA + ++ + +   + +        +          +DI       T
Sbjct: 55  IIFYGPPGTGKTTLAKVIANTTSASFRQINATVAGKKDMEDVVNGA---KDIMASMGQRT 111

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V    L SR   + V ++  
Sbjct: 112 ILFVDEIHRFNKGQQDYLLPYVEDGTIILIGATTENPYFEVNKA-LISR---SVVFELKP 167

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV 202
            + + +  +I     D  R +      ID   A ++ 
Sbjct: 168 LEKEDILSIIKTAVYDTKRGMGNYNAVIDDDAAEFLA 204


>gi|308233738|ref|ZP_07664475.1| Recombination protein MgsA [Atopobium vaginae DSM 15829]
 gi|328943727|ref|ZP_08241192.1| AAA family ATPase [Atopobium vaginae DSM 15829]
 gi|327491696|gb|EGF23470.1| AAA family ATPase [Atopobium vaginae DSM 15829]
          Length = 475

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 27/175 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G+GK+ LA I +  S +            K +   L   R  +L+ ++  + F
Sbjct: 81  IILYGPPGTGKTTLAQIIAHTSSAHFVDLSALLARVKDVREELAQARSRLLITNVKTIMF 140

Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            D    H  +           +    +L+ A T    + V    L SR   + +++++  
Sbjct: 141 IDEI--HRFSRSQQDSLLKGVENRDVILIGATTENPYFEVNSA-LISR---SKIIELTRL 194

Query: 174 DDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            DD +  +I +   D R +     +D+     ++  M  S   A   +  ++  +
Sbjct: 195 SDDDIACIIARALTDSRGLNNCFTLDESALQALI-YM--SAGDARAALTSLELAS 246


>gi|225019550|ref|ZP_03708742.1| hypothetical protein CLOSTMETH_03503 [Clostridium methylpentosum
           DSM 5476]
 gi|226325667|ref|ZP_03801185.1| hypothetical protein COPCOM_03480 [Coprococcus comes ATCC 27758]
 gi|283796483|ref|ZP_06345636.1| replicative DNA helicase [Clostridium sp. M62/1]
 gi|290969254|ref|ZP_06560779.1| IstB-like ATP binding protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|331004534|ref|ZP_08328003.1| hypothetical protein HMPREF0491_02865 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|224947695|gb|EEG28904.1| hypothetical protein CLOSTMETH_03503 [Clostridium methylpentosum
           DSM 5476]
 gi|225205791|gb|EEG88145.1| hypothetical protein COPCOM_03480 [Coprococcus comes ATCC 27758]
 gi|290780760|gb|EFD93363.1| IstB-like ATP binding protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|291075895|gb|EFE13259.1| replicative DNA helicase [Clostridium sp. M62/1]
 gi|295090348|emb|CBK76455.1| phage DNA replication protein (predicted replicative helicase
           loader) [Clostridium cf. saccharolyticum K10]
 gi|295100562|emb|CBK98107.1| phage DNA replication protein (predicted replicative helicase
           loader) [Faecalibacterium prausnitzii L2-6]
 gi|330410642|gb|EGG90066.1| hypothetical protein HMPREF0491_02865 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 280

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 28/130 (21%)

Query: 50  EQAVRLIDSWPS-WPSRVVIL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96
             A R ++ W       +  L  G  G+GKS LA   ++              +   +++
Sbjct: 111 GLARRYVEHWEDMRTDNIGCLFWGGVGTGKSYLAGCIANALMEKEIPVRMTNFALILNDL 170

Query: 97  AKSLDSI-----LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148
           A S +        +     ++L+D  +    +    Q+F++I+S ++    L++T     
Sbjct: 171 AASFEGRNEYISRLCRYPLLILDDFGMERGTEYGLEQVFNVIDSRYRSGKPLIVTT---- 226

Query: 149 VSWGVCLPDL 158
               + L DL
Sbjct: 227 ---NLTLDDL 233


>gi|84367998|dbj|BAE69156.1| ATPase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 430

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G GK+ LA + +  + +  F+ I+  L    +   + VL E            
Sbjct: 34  MILWGPPGCGKTTLALLLAHYADAE-FNAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 90

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 91  LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 147

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     A+R +      + +     I    +  +  A  L++    LA 
Sbjct: 148 PQDIVEALQRAL---HDAERGLGQQTIQVSEASLLEIASAADGDVRRALTLLEIAAELAT 204

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 205 GEGGEITPRTLLQVLADRTR 224


>gi|148244014|ref|YP_001220252.1| IstB ATP binding domain-containing protein [Acidiphilium cryptum
           JF-5]
 gi|146400577|gb|ABQ29110.1| IstB domain protein ATP-binding protein [Acidiphilium cryptum JF-5]
          Length = 291

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 22/109 (20%)

Query: 70  VGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPV 111
            GP G GKS LA           W        D  +  + +    +L++ +  +D    +
Sbjct: 113 FGPPGGGKSHLAAAIGLALVENGWRVLFTRTSDLVQKLQIARRELALEATIAKLDKFHLL 172

Query: 112 LLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +L+D+  +  +  +   LF +I S      SL++TA      WG   PD
Sbjct: 173 ILDDLAYVTKDQAETSVLFELI-SARYERRSLMITANQPFGEWGKVFPD 220


>gi|326385130|ref|ZP_08206799.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196163|gb|EGD53368.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 856

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 42/206 (20%)

Query: 66  VVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFN 122
            +++  PSG GKS +    S+  + R  R +  A+   + L D    V L++D D  D N
Sbjct: 29  FILITAPSGGGKSTVLRRLSETLRGRGVRVAGGAEHDPASLFDGAPAVLLIDDADRSDPN 88

Query: 123 DTQLFHIINSIH-QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
                H +         S ++TA     +    LPD          +++   D       
Sbjct: 89  TLHRLHELADARPDAPVSTVLTADAATSAIADLLPD---------TMRLPGLD----RSA 135

Query: 182 IVKMFADRQIFIDKKLA----------------------AYIVQRMERSLVFAEKLVDKM 219
           + ++   R   +   L                         +  R + SL    ++V ++
Sbjct: 136 VAEIALRRGRAVHPSLIDELTRHTAGRPREIVELLDELPDRLWSRADASLPAPRRVVAEV 195

Query: 220 DNLALSRGMGITRSL--AAEVLKETQ 243
               L+     TRSL  A  VL   +
Sbjct: 196 -RAGLAECRPETRSLIEAIAVLNAPE 220


>gi|322487941|emb|CBZ23187.1| putative 26S protease regulatory subunit [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 396

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     +A S+    I     V+ E
Sbjct: 173 PPKGVLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIRE 224


>gi|299744108|ref|XP_001840883.2| AAA family ATPase [Coprinopsis cinerea okayama7#130]
 gi|298405968|gb|EAU80936.2| AAA family ATPase [Coprinopsis cinerea okayama7#130]
          Length = 789

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P R ++L GP G+GK+ LA   +  ++S+  
Sbjct: 279 PPRGILLHGPPGTGKTHLARAIASSTQSSVL 309


>gi|199599229|ref|ZP_03212631.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|258507184|ref|YP_003169935.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
 gi|199589910|gb|EDY98014.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001]
 gi|257147111|emb|CAR86084.1| AAA ATPase [Lactobacillus rhamnosus GG]
 gi|259648554|dbj|BAI40716.1| recombination factor protein RarA [Lactobacillus rhamnosus GG]
          Length = 448

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 21/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +I  GP G GK+ LA I + ++++    FS +   +  I            +  +  V +
Sbjct: 51  MIFWGPPGVGKTTLARIIARRTQAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 110

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ V    L SR +   V  +   
Sbjct: 111 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 163

Query: 174 DDDFLEKVIVKMFAD-RQ 190
               L  ++ +   D R 
Sbjct: 164 TSAELVDLLQRALKDPRG 181


>gi|114605194|ref|XP_001159632.1| PREDICTED: ATPase WRNIP1 isoform 3 [Pan troglodytes]
          Length = 665

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339


>gi|62898918|dbj|BAD97313.1| Werner helicase interacting protein isoform 1 variant [Homo
           sapiens]
          Length = 665

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339


>gi|146297065|ref|YP_001180836.1| recombination factor protein RarA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410641|gb|ABP67645.1| Recombination protein MgsA [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 444

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 23/138 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL---LDFND 123
           +IL GP G+GK+ +A++ +  +    F +I  ++  I    +   ++E+  L        
Sbjct: 55  IILYGPPGTGKTTIAHVIAQVTN-NIFKSINATIAGINDIKK---IIEEAKLEFSQGGRR 110

Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N +         +    +L+ A T    + V    L SR   + V ++ 
Sbjct: 111 TILFIDEIHRFNKLQQDALLPSVEEGIIVLIGATTENPFYEVNKA-LVSR---SLVFELF 166

Query: 172 LPDDDFLEKVIVKMFADR 189
              ++ + K+I +  +D+
Sbjct: 167 PLKEEDIIKIINRAISDK 184


>gi|71029248|ref|XP_764267.1| replication factor C [Theileria parva strain Muguga]
 gi|68351221|gb|EAN31984.1| replication factor C, putative [Theileria parva]
          Length = 1193

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 51/219 (23%)

Query: 40  RDDLLVHSA-IEQAVRLIDSWP---------SWPSRVVILVG-PSGSGKSCLANIWSD-- 86
             DLL       + +R + SW            P   ++L+G P G GK+ L N+ +   
Sbjct: 581 FSDLLTSENVNLECLRWLSSWKCSSNYLDKYEEPEHKILLIGGPPGVGKTSLVNVIAKHC 640

Query: 87  --------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINS 132
                         K R+    N   S  S++ +     LLED+D L  ++ Q   II+ 
Sbjct: 641 GYNVVEINSSDDRTKGRAIPIINGVISAGSVVPNKPNLCLLEDVDTLFGSELQ---IISY 697

Query: 133 IHQYDSSLLMTARTFPVSWG-VCLP------DLCSR----LKAAT-VVKISLPDDDFLEK 180
           + Q      ++++  P     +  P      D+ SR    L+  + VV I   D   L+ 
Sbjct: 698 LKQ------ISSKKHPKGGHFIKRPIICTCIDVYSRQLKELRDVSKVVIIDTCDPSVLQS 751

Query: 181 VIVKMFADRQIFIDKKLAAYIVQ--RME-RSLVFAEKLV 216
            I  +  +  I++  +L   I++  R + RS + + + +
Sbjct: 752 RIEWVLDEEGIYMADELIKEILETYRYDIRSCLTSMEFI 790


>gi|319792075|ref|YP_004153715.1| aaa atpase central domain protein [Variovorax paradoxus EPS]
 gi|315594538|gb|ADU35604.1| AAA ATPase central domain protein [Variovorax paradoxus EPS]
          Length = 430

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 26/176 (14%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112
           IL GP G+GK+ +A + +D   +   S                 A +    L   R  V 
Sbjct: 47  ILWGPPGTGKTTIARLMADAFDAQFLSISAVLGGVKDIREAVERATAARDGLEQRRTIVF 106

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR   A V  +  
Sbjct: 107 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQP 159

Query: 173 PDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             +  LE+++ K  + + +  ID+     +V   +     A +L++ ++ LA++  
Sbjct: 160 LTEGDLEQIVAKAQSIQAVPAIDETAIDRLVAYAD---GDARRLLNTLETLAVAAR 212


>gi|281355534|ref|ZP_06242028.1| Holliday junction DNA helicase RuvB [Victivallis vadensis ATCC
           BAA-548]
 gi|281318414|gb|EFB02434.1| Holliday junction DNA helicase RuvB [Victivallis vadensis ATCC
           BAA-548]
          Length = 341

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 18/135 (13%)

Query: 3   LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRD-DLLVHSAIEQAVRLIDSWPS 61
            +    +   P ++ + +P          FP    +    +L VH+A  +    +D    
Sbjct: 5   FITSTLNKKDPARETSLRPPKFA-----DFPGQDRVKEQLELFVHAAKAR-EEALDH--- 55

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
                ++L GP G GK+ LA I +++  +   S+   +++           LE  D+L  
Sbjct: 56  -----ILLCGPPGLGKTTLAYIIANERGTNLKSSSGPAIEKPGDLAGLLTALEPGDVLFI 110

Query: 122 NDTQLFHIINSIHQY 136
           ++    H +NS  + 
Sbjct: 111 DEI---HRLNSTVEE 122


>gi|254508488|ref|ZP_05120607.1| ATPase, AAA family [Vibrio parahaemolyticus 16]
 gi|219548600|gb|EED25606.1| ATPase, AAA family [Vibrio parahaemolyticus 16]
          Length = 428

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 67/199 (33%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 34  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIERAREN--KLAGRRTIL 91

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 92  FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 145

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
                +   + +   D  R +       D+ +   +        RM  SL + E L D  
Sbjct: 146 LSQQDIGLALQQAINDEKRGLGKVEAAFDEGVLDRLSELVNGDARM--SLNYLELLYDMA 203

Query: 220 DNLALSRGMGITRSLAAEV 238
           +  A      IT  L AEV
Sbjct: 204 EEDA-QGVKVITLPLLAEV 221


>gi|242279432|ref|YP_002991561.1| recombination factor protein RarA [Desulfovibrio salexigens DSM
           2638]
 gi|242122326|gb|ACS80022.1| AAA ATPase central domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 420

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 16/163 (9%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120
             ++L GP G GKS LA + +  +     R S     + ++   +     ++L+++    
Sbjct: 43  PSLLLFGPPGCGKSTLAMLLAKSTGRHFMRISAPESGITALRKQLAGMDILILDELHRFS 102

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                 F  I    +     L+   T   S+ V    L SRL    V+++       L  
Sbjct: 103 KAQQDFFLPI---LESGEITLLATTTENPSFSVTRQ-LLSRL---HVLRLRSLGKTDLLA 155

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRM----ERSLVFAEKLVDKM 219
           +  +   + +I + +     ++  M     RSL+   +   ++
Sbjct: 156 ICNRACEELEIELSEDSLN-LITSMAGGDGRSLLNLLEYTSQL 197


>gi|170594441|ref|XP_001901972.1| Probable 26S protease regulatory subunit 4 [Brugia malayi]
 gi|158590916|gb|EDP29531.1| Probable 26S protease regulatory subunit 4, putative [Brugia
           malayi]
          Length = 422

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 26/183 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + VIL G  G+GK+ LA   ++++ +T        +  + ID    V  +  D     
Sbjct: 229 PPKGVILYGCPGTGKTLLAKAVANQTSATFL-----RVSIVFIDEIDAVGTKRYDSNSGG 283

Query: 123 DTQL----FHIINSIH----QYDSSLLMTA----RTFPVSWGVCLPDLCSRLKAATVVKI 170
           + ++      ++N +     + D  +LM         P        D          ++ 
Sbjct: 284 EREIQRTMLELLNQLDGFDSRGDVKVLMATNRIDSLDPALIRPGRIDRK--------IEF 335

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-G 229
            LPD+    ++     +   +  D  L  +I  + E S    + +  +   LAL      
Sbjct: 336 PLPDEKTKRRIFQIHTSRMTLANDVDLDEFIAAKDELSGADIKAMCTEAGLLALRERRMR 395

Query: 230 ITR 232
           +T 
Sbjct: 396 VTM 398


>gi|59711514|ref|YP_204290.1| recombination factor protein RarA [Vibrio fischeri ES114]
 gi|59479615|gb|AAW85402.1| recombination protein [Vibrio fischeri ES114]
          Length = 448

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 40/200 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA + ++ + +                + I K+ ++ +   R  + +
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIEKAKENQITGRRTIMFV 113

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  +   + A T   S+ +    L SR   A V K+ 
Sbjct: 114 DEVHRFNKSQQDAFLPHI-----EDGTITFIGATTENPSFELNNA-LLSR---ARVYKLK 164

Query: 172 LPDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDK 218
             + + + +VI +     DR +      +   +   +        RM  SL + E L D 
Sbjct: 165 SLEKEDIVQVIDQALLDKDRGLNDENFVLPDDVKLQLADLVSGDARM--SLNYLELLHDM 222

Query: 219 MDNLALSRGMGITRSLAAEV 238
            +  A      +   L AEV
Sbjct: 223 AEENA-QGKKVVDLPLLAEV 241


>gi|307110563|gb|EFN58799.1| hypothetical protein CHLNCDRAFT_140589 [Chlorella variabilis]
          Length = 841

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 66/182 (36%), Gaps = 53/182 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 307

Query: 107 TRKPVLLEDIDLLD-------FNDTQ-----------------------LFHIINSIHQY 136
               + +++ID +         ++                         L  +++ +   
Sbjct: 308 APAIIFIDEIDSIAPKREKTQASEEAWGQGCGDGLERAKGEVERRIVSQLLTLMDGLKSR 367

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
              ++M A   P S     P L  R  +    + I +PD+    +V+      R + +D+
Sbjct: 368 SHVIVMGATNRPNSID---PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTRNMKLDE 421

Query: 196 KL 197
            +
Sbjct: 422 DV 423



 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 539 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 595


>gi|298715833|emb|CBJ28298.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 394

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +T    +A ++    I     V+ E
Sbjct: 171 PPKGVLLYGPPGTGKTLLARALASNINATFLKVVASAIVDKYIGESARVVRE 222


>gi|260909479|ref|ZP_05916183.1| replication-associated recombination protein A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260636404|gb|EEX54390.1| replication-associated recombination protein A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 424

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 47/209 (22%)

Query: 39  SRDDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--SRST 91
           S DD      LV         +I++         IL GP G GK+ LA I + K  +   
Sbjct: 13  SLDDYVGQKHLVGP-NAVLRNMIEA---GRIPSFILWGPPGVGKTTLAQIVAKKLETPFY 68

Query: 92  RFSNIAKSLDSI-----------LIDTRKPVL-LEDIDLLDFNDT-QLFHIINSIHQYDS 138
             S +   +  +              +  P+L +++I     +    L        +   
Sbjct: 69  TLSAVTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSLL----GAVEKGI 124

Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM------FADRQIF 192
             L+ A T   S+ V  P L SR     +  +     + LE +I +          R I 
Sbjct: 125 VTLIGATTENPSFEVIRP-LLSR---CQLYVLQSLSKEDLEDLIERALKTDVSLQQRHIE 180

Query: 193 IDK--KLAAYIVQRMERSLVFAEKLVDKM 219
           + +   L  Y       S   A KL++ +
Sbjct: 181 VKENAALIRY-------SGGDARKLLNIL 202


>gi|296130791|ref|YP_003638041.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296022606|gb|ADG75842.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 466

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 23/143 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST---RFSNIAKSLDSILIDTRKP-----VLLEDI 116
           R V+L GP G+GK+        +S        S  A  L ++  +T +      V+LED 
Sbjct: 255 RGVLLYGPPGTGKTHTVRHLVGESPGVTVILLSGQALQLVTVATETARALQPAMVVLEDC 314

Query: 117 DLLD------FNDTQLFHIIN----SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165
           DL+        +   LF +++         D + L+T         V  P L  R     
Sbjct: 315 DLVAEERSMHGSSPVLFEVLDALDGLASDADVTFLLTTNRA----DVLEPALAQRPGRVD 370

Query: 166 TVVKISLPDDDFLEKVIVKMFAD 188
             V++ LPD     ++     AD
Sbjct: 371 LAVEVPLPDAAGRRRLFRLYAAD 393


>gi|221480962|gb|EEE19376.1| hypothetical protein TGGT1_094980 [Toxoplasma gondii GT1]
          Length = 592

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 68/184 (36%), Gaps = 44/184 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++          
Sbjct: 371 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFELAKEK 430

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A   P   
Sbjct: 431 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRPDVL 490

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     +++  P+++  E+++      R++ ++K+   +      R L 
Sbjct: 491 DPAL--LRSGRLD--RKIELPHPNEEARERILQIHA--RKMNVNKEDVNF------RELA 538

Query: 211 FAEK 214
            A  
Sbjct: 539 RATD 542


>gi|160331385|ref|XP_001712400.1| prsS6A [Hemiselmis andersenii]
 gi|159765848|gb|ABW98075.1| prsS6A [Hemiselmis andersenii]
          Length = 410

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ LA   + ++++T        L  + I     ++ E
Sbjct: 190 PPKGVLLHGPPGMGKTLLARACASQTKATFLKLAGPQLVQMYIGEGASLIRE 241


>gi|110667503|ref|YP_657314.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
           16790]
 gi|109625250|emb|CAJ51672.1| proteasome-activating nucleotidase 2 [Haloquadratum walsbyi DSM
           16790]
          Length = 405

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ ++        L    I     ++ +  ++   N
Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANQTDASFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 241

Query: 123 DTQL 126
           +  +
Sbjct: 242 EPAV 245


>gi|85717050|ref|ZP_01048012.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85696174|gb|EAQ34070.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 230

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 98  QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206


>gi|83854945|ref|ZP_00948475.1| ATPase, AAA family protein [Sulfitobacter sp. NAS-14.1]
 gi|83842788|gb|EAP81955.1| ATPase, AAA family protein [Sulfitobacter sp. NAS-14.1]
          Length = 435

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 72/204 (35%), Gaps = 27/204 (13%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G GK+ +A + +D++     + S I   +  +            I 
Sbjct: 49  QSGSLGSLIFWGPPGVGKTTIARLLADETDLHFVQISAIFSGVPELRKVFDAA----KIR 104

Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163
             +   T LF    H  N   Q          ++L+   T           +    SR +
Sbjct: 105 RQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAV---LSRSQ 161

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + ++ L D + L +   K    R + +D      +++  +        L++++   A
Sbjct: 162 VLVLERLPLSDLERLAQRAEKELG-RGLPLDGPARENLLEMADGDGRALLNLIEQV--AA 218

Query: 224 LSRGMGIT-RSLAAEVLKETQQCD 246
                 +  ++L+A +++   Q D
Sbjct: 219 WKVEGKLDGKALSARLMRRAAQYD 242


>gi|261492454|ref|ZP_05989010.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311913|gb|EEY13060.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 445

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 35/203 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 52  MIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIREAIEQA----KLNRQAGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---ARIYIL 161

Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
                  + K++    AD  R      + ++  + A +   +     FA   ++ M D  
Sbjct: 162 KPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMVDMA 221

Query: 223 ALSRGMGI-TRSLAAEVLKETQQ 244
             S    +  +SL  EVL E Q 
Sbjct: 222 QDSAKGKVLNKSLLTEVLGERQA 244


>gi|94986459|ref|YP_594392.1| recombination factor protein RarA [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730708|emb|CAJ54070.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Lawsonia intracellularis PHE/MN1-00]
          Length = 410

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 11/159 (6%)

Query: 65  RVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120
             ++  GP G GKS LA + +    +   R S     +  +   +     ++L++I    
Sbjct: 38  PSLLFFGPPGCGKSTLALLLAYKKSTNILRISAPETGIQQLRQKLTDIDILILDEIHRFS 97

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                 F     + +     ++   T   S+ V    L SRL    V+++     + L++
Sbjct: 98  KAQQDFFLP---LLESGKLTMLATTTENPSFSVT-KQLLSRLN---VLQLRQLGYNELKE 150

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           ++ K      I +   +  ++             L++ +
Sbjct: 151 LVKKGTLFLNILLPDDVINFLATTAHGDARTLFNLIEYI 189


>gi|62089026|dbj|BAD92960.1| Werner helicase interacting protein isoform 1 variant [Homo
           sapiens]
          Length = 646

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  S+      +  S  +   +      + D+     N+ 
Sbjct: 243 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 297

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 298 SFFKRKTILFIDEIHRFNKSQQD 320


>gi|294877998|ref|XP_002768232.1| 26S protease regulatory subunit 6A, putative [Perkinsus marinus
           ATCC 50983]
 gi|239870429|gb|EER00950.1| 26S protease regulatory subunit 6A, putative [Perkinsus marinus
           ATCC 50983]
          Length = 457

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 67/185 (36%), Gaps = 40/185 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + ++L GP G+GK+ +A   +  + +T        L  + I     ++          
Sbjct: 235 PPKGLLLYGPPGTGKTMMARSCAAATNATFLKLAGPQLVQMFIGDGSKMVRDAFNLAKEK 294

Query: 113 ------LEDIDLLDFN-------------DTQLFHIINSIH---QYDSSLLMTARTFPVS 150
                 ++++D +                   +  ++N +      D   ++ A      
Sbjct: 295 APAIIFIDELDAIGMKRSAGGELSGVREVQRTMLELLNQLDGFSSDDRVKVIAATNRADM 354

Query: 151 WGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY-IVQRMERS 208
               L  L S RL     V++ LP++D  ++++      R++ ++K+   +  + R    
Sbjct: 355 LDPAL--LRSGRLD--RKVELPLPNEDARKRILQ--IHSRKMNVNKEDVNFDELARCTDD 408

Query: 209 LVFAE 213
              A+
Sbjct: 409 FNGAQ 413


>gi|269837537|ref|YP_003319765.1| AFG1-family ATPase [Sphaerobacter thermophilus DSM 20745]
 gi|269786800|gb|ACZ38943.1| AFG1-family ATPase [Sphaerobacter thermophilus DSM 20745]
          Length = 329

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 29/148 (19%)

Query: 30  FSFPRCLGISRDDLLVHSA-------IEQAVRLID----------SWPSWPSRVVILVGP 72
           F  P     S DD     A       + +   ++D            P    R + L GP
Sbjct: 21  FRLPARFAASLDDYRPDPAYPGQAEALTRVRAMLDPEPPRRRLFRRAPDSTPRGLYLDGP 80

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----------LIDTRKPVLLEDIDLLDF 121
            G GK+ L     + +   R       L +            L+  ++ V +++IDL D 
Sbjct: 81  PGVGKTHLMAAAFNSASEPRLFVTFDELSAAAGTLGMSGLSRLLANQRLVCIDEIDLRDP 140

Query: 122 NDTQLF-HIINSIHQYDSSLLMTARTFP 148
            +  L   ++ ++      ++ TA   P
Sbjct: 141 ANIMLLVSLLRAMLAGSPRIIATANADP 168


>gi|218133225|ref|ZP_03462029.1| hypothetical protein BACPEC_01089 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992098|gb|EEC58102.1| hypothetical protein BACPEC_01089 [Bacteroides pectinophilus ATCC
           43243]
          Length = 447

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 24/155 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + ++ + +      A       ++       ++I  +    T L
Sbjct: 59  IIFYGPPGTGKTTLAKVIANTTSADFCQINATVAGKKDMEDVVAKAKDNI-GMYGRKTIL 117

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + V ++   +
Sbjct: 118 FVDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNQA-LISR---SAVFELRPLE 173

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIV 202
            D + K+I +  +D           ID   + ++ 
Sbjct: 174 KDDILKLIKRAISDDKKGMGAYGALIDDDASEFLA 208


>gi|58426759|gb|AAW75796.1| ATPase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 517

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G GK+ LA + +  + +  F+ I+  L    +   + VL E            
Sbjct: 121 MILWGPPGCGKTTLALLLAHYADAE-FNAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 177

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 178 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 234

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     A+R +      + +     I    +  +  A  L++    LA 
Sbjct: 235 PQDIVEALQRAL---HDAERGLGQQTIQVSEASLLEIASAADGDVRRALTLLEIAAELAT 291

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 292 GEGGEITPRTLLQVLADRTR 311


>gi|157879038|ref|XP_001687348.1| serine peptidase, Clan SJ, family S16 [Leishmania major strain
           Friedlin]
 gi|321438263|emb|CBZ12016.1| putative 26S protease regulatory subunit [Leishmania major strain
           Friedlin]
          Length = 396

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     +A S+    I     V+ E
Sbjct: 173 PPKGVLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIRE 224


>gi|229581607|ref|YP_002840006.1| proteasome-activating nucleotidase [Sulfolobus islandicus
           Y.N.15.51]
 gi|259535109|sp|C3NFW6|PAN_SULIN RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|228012323|gb|ACP48084.1| 26S proteasome subunit P45 family [Sulfolobus islandicus Y.N.15.51]
          Length = 393

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +S +     +A       +     ++ E
Sbjct: 167 PPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRE 218


>gi|308271855|emb|CBX28463.1| Holliday junction ATP-dependent DNA helicase ruvB [uncultured
           Desulfobacterium sp.]
          Length = 352

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA+I ++++ +        +L+           LE+ D+L  +
Sbjct: 70  PIDHVLLHGPPGLGKTTLAHIIANETGANLTVTSGPALEKGGDLVGILTHLEEGDILFID 129

Query: 123 DT 124
           + 
Sbjct: 130 EI 131


>gi|254558147|ref|YP_003065672.1| transposase of ISMdi27, IS21 family (ORF 2) [Methylobacterium
           extorquens DM4]
 gi|254265690|emb|CAX17034.1| transposase of ISMdi27, IS21 family (ORF 2) [Methylobacterium
           extorquens DM4]
          Length = 244

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLED- 115
            R V+LVG +G+GK+ LA   +        ++R     ++   L++     R+  + +  
Sbjct: 99  QRNVVLVGGTGTGKTHLAIAMARACIRDGARARFYNVVDLVNRLEAEARAGRQGRIADHL 158

Query: 116 --IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
             +DL+  ++             LFH+I+ +++  +S+++T       W 
Sbjct: 159 ARLDLVVLDELGYLPFAQSGGQLLFHLISKLYET-TSIVVTTNLAFGEWP 207


>gi|254518552|ref|ZP_05130608.1| holliday junction DNA helicase RuvB [Clostridium sp. 7_2_43FAA]
 gi|226912301|gb|EEH97502.1| holliday junction DNA helicase RuvB [Clostridium sp. 7_2_43FAA]
          Length = 341

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +           +++           L+D D+L  ++   
Sbjct: 54  VLLYGPPGLGKTTLANIIAKEMDGELKITSGPAIERAGDLAAILTTLKDNDVLFIDEI-- 111

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 112 -HRLNRNVEE 120


>gi|210622016|ref|ZP_03292959.1| hypothetical protein CLOHIR_00905 [Clostridium hiranonis DSM 13275]
 gi|210154461|gb|EEA85467.1| hypothetical protein CLOHIR_00905 [Clostridium hiranonis DSM 13275]
          Length = 351

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 37/203 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++           +++           LE+ D+L  ++   
Sbjct: 74  VLLYGPPGLGKTTLAGIIANEMGVNLRITSGPAIEKAGDLAAILTNLEENDVLFIDEI-- 131

Query: 127 FHIINSIHQY----------------------------DSSLLMTARTFPVSWGVCLPDL 158
            H IN   +                                 L+ A T P      L D 
Sbjct: 132 -HRINRSVEEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRPGMLTNPLRD- 189

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
               +   + K+    +D L +++ +        ID K AA I +R   +   A +L+ +
Sbjct: 190 ----RFGVICKLDYYTNDELAQIVKRSSGLLGAGIDDKSAAEIARRSRGTPRIANRLLKR 245

Query: 219 M-DNLALSRGMGITRSLAAEVLK 240
           + D   +     IT  +A + L+
Sbjct: 246 VRDYAQVRANGDITEDVAKDALE 268


>gi|56459774|ref|YP_155055.1| recombination factor protein RarA [Idiomarina loihiensis L2TR]
 gi|56178784|gb|AAV81506.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Idiomarina loihiensis L2TR]
          Length = 446

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 31/178 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + + ++ +T  R S +   +  I     +  LL          T
Sbjct: 52  MILWGPPGTGKTTLAELIATQANATVSRISAVTSGVKDIRKAIEEAKLL---AQQQGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISL 172
            LF    H  N   Q        D +++    T     G  L + L SR   A V ++  
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTIVFIGATTENP-GFELNNALLSR---ARVYRLQT 164

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                LE+ +     D       RQ+ ++ +  A ++   + +   A +L++ ++ +A
Sbjct: 165 LSKTDLEQALESALTDAERGLGQRQLQLEGEARAKLL---DLAGGDARRLLNYLEVVA 219


>gi|17532375|ref|NP_495705.1| Cell Division Cycle related family member (cdc-48.2)
           [Caenorhabditis elegans]
 gi|6226902|sp|P54812|TERA2_CAEEL RecName: Full=Transitional endoplasmic reticulum ATPase homolog 2;
           AltName: Full=Cell division cycle-related protein 48.2;
           AltName: Full=p97/CDC48 homolog 2
 gi|3874892|emb|CAA88105.1| C. elegans protein C41C4.8, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|3875715|emb|CAA88314.1| C. elegans protein C41C4.8, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 810

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+      +
Sbjct: 242 PPRGILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKN 301

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 302 SPAILFIDEIDAIAPKREKAHGEVEKRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGA 361

Query: 155 L 155
           L
Sbjct: 362 L 362



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 515 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 571


>gi|332031295|gb|EGI70823.1| 26S protease regulatory subunit 4 [Acromyrmex echinatior]
          Length = 439

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 45/206 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 276

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146
                 +++ID +                  +  ++N +     + D  ++M        
Sbjct: 277 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVVMATNRIETL 336

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          ++  LPD+    ++     +   +  D  LA  I+ + +
Sbjct: 337 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFNIHTSRMTLAPDVNLAELIMAKDD 388

Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231
            S    + +  +   +AL      +T
Sbjct: 389 LSGADIKAICTEAGLMALRERRMKVT 414


>gi|281202026|gb|EFA76231.1| 26S proteasome ATPase 3 subunit [Polysphondylium pallidum PN500]
          Length = 427

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++ ST        L  + I     ++          
Sbjct: 207 PPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 266

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +       +  ++ A       
Sbjct: 267 GPTIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDIL 326

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++  LP+++    ++      R++ +   +
Sbjct: 327 DPAL--LRSGRLD--RKIEFPLPNEEARSHIL--RIHSRKMNVSPDV 367


>gi|46580096|ref|YP_010904.1| recombination factor protein RarA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602446|ref|YP_966846.1| recombination factor protein RarA [Desulfovibrio vulgaris DP4]
 gi|46449512|gb|AAS96163.1| ATPase, AAA family [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562675|gb|ABM28419.1| Recombination protein MgsA [Desulfovibrio vulgaris DP4]
 gi|311233905|gb|ADP86759.1| AAA ATPase central domain protein [Desulfovibrio vulgaris RCH1]
          Length = 411

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 14/163 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120
             ++L GP G GKS LA + +    +   R S     L  +   +     ++L+++    
Sbjct: 39  PSLLLFGPPGCGKSTLALLLAKARSANVLRLSAPEAGLQHLRKQLHGVDILVLDELHRFS 98

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                 F  +  +   D ++L T    P  + V    L SRL    V+++       L +
Sbjct: 99  KAQQDFF--LPLLESGDITMLATTTENPS-FSVTRQ-LLSRL---HVLRLRPLGRAELLE 151

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +  +    +++ I+  +   +      S   A  +++ ++ +A
Sbjct: 152 LGRRGAVAQEVQIEDDVLDLLA---SMSHGDARTMLNLLEYVA 191


>gi|18426902|ref|NP_064520.2| ATPase WRNIP1 isoform 1 [Homo sapiens]
 gi|73622085|sp|Q96S55|WRIP1_HUMAN RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1
 gi|55661735|emb|CAH73664.1| Werner helicase interacting protein 1 [Homo sapiens]
 gi|119575489|gb|EAW55085.1| Werner helicase interacting protein 1, isoform CRA_a [Homo sapiens]
          Length = 665

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339


>gi|147669758|ref|YP_001214576.1| recombination factor protein RarA [Dehalococcoides sp. BAV1]
 gi|146270706|gb|ABQ17698.1| AAA ATPase, central domain protein [Dehalococcoides sp. BAV1]
          Length = 457

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 21/137 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--N 122
             +I  GP GSGK+ LANI +    +      A S  S  +   + V+ E  + L     
Sbjct: 58  PSLIFWGPPGSGKTTLANIIAHSLDAHF---SALSAVSAGVADLRRVVEEARERLKLYHR 114

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  + +L+ A T   S+ V    L SR     V  +
Sbjct: 115 RTILFIDEIHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSA-LLSR---VQVYVL 170

Query: 171 SLPDDDFLEKVIVKMFA 187
           +   +  L  ++ +   
Sbjct: 171 NSLSEKELSVILKRSLE 187


>gi|330900604|gb|EGH32023.1| recombination factor protein RarA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 440

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +   +  A       I     V  +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      RQ+ +  +  A ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRQLALSDEGFAMLMSAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDVGLLQSLLGDSRR 239


>gi|320101978|ref|YP_004177569.1| AAA family ATPase, CDC48 subfamily [Isosphaera pallida ATCC 43644]
 gi|319749260|gb|ADV61020.1| AAA family ATPase, CDC48 subfamily [Isosphaera pallida ATCC 43644]
          Length = 845

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G GK+ +A   + +S +  F+     +                D     
Sbjct: 339 PPQGVLLHGPPGCGKTLIARAVAAESDAAFFAVNGPEIVHKFYGESEAHLRRIFDEAARS 398

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + L++ID +                 QL  +++ +++    L++ A   P +    
Sbjct: 399 APSIIFLDEIDAIAPKRENAVGEVEKRIVAQLLALMDGMNRRGRVLVLAATNLPNNLDPA 458

Query: 155 L 155
           L
Sbjct: 459 L 459



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R ++L GP G GK+ +A   + +S++        +L S  +   +  + E
Sbjct: 612 PPRGILLHGPPGCGKTLIAKAIARESQANFIPVKGPALLSKYVGDSEKAVRE 663


>gi|289705553|ref|ZP_06501945.1| ATPase, AFG1 family [Micrococcus luteus SK58]
 gi|289557782|gb|EFD51081.1| ATPase, AFG1 family [Micrococcus luteus SK58]
          Length = 351

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 64/203 (31%), Gaps = 43/203 (21%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA+ W               +     ++       +     V +++
Sbjct: 86  IYLDGGFGVGKTHLLASTWHAAPGPKAFGTFVEYTNLVGALSFRKAVDQLKEYTLVCIDE 145

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG---------------------- 152
            +L D  DT L   ++  +      L+ T+ T P S G                      
Sbjct: 146 FELDDPGDTVLMSRLMRELADAGVRLVATSNTLPGSLGEGRFAAQDFKREIQVLADQFEV 205

Query: 153 --VCLPDLCSR-LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
             V   D   R L AA        DD  +E    + F D  +      A  +   + R  
Sbjct: 206 IRVDGEDYRHRGLSAAPS----PLDDAAVEATAQENFPDAGVLAVDDFAD-LTAMLSRVH 260

Query: 210 VF-AEKLVDKMDNLALSRGMGIT 231
                +LV  +D LAL     IT
Sbjct: 261 PSRYRELVKDVDVLALHDVHTIT 283


>gi|259089391|ref|NP_001158521.1| Transitional endoplasmic reticulum ATPase [Oncorhynchus mykiss]
 gi|225703688|gb|ACO07690.1| Transitional endoplasmic reticulum ATPase [Oncorhynchus mykiss]
          Length = 323

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 39/85 (45%), Gaps = 16/85 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIIN 131
           +   + ++++D +     +++   N
Sbjct: 297 SPAIIFIDELDAIAPKREKVWGREN 321


>gi|189466213|ref|ZP_03014998.1| hypothetical protein BACINT_02583 [Bacteroides intestinalis DSM
           17393]
 gi|189434477|gb|EDV03462.1| hypothetical protein BACINT_02583 [Bacteroides intestinalis DSM
           17393]
          Length = 424

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 34/175 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-----------LIDTRKPVL- 112
            IL GP G GK+ LA I ++K  +     S +   +  +                 P+L 
Sbjct: 41  FILWGPPGVGKTTLAQIIANKLETPFYTLSAVTSGVKDVREVIERAKSNRFFSQGSPILF 100

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +  +  L+ A T   S+ V  P L SR     +  + 
Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEQGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152

Query: 172 LPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
             + + L +++ +         +R+I + +  A      +  S   A KL++ +D
Sbjct: 153 SLEKEDLMELLQRAVTTDHILKERKIELKETTAM-----LRYSGGDARKLLNILD 202


>gi|118780835|ref|XP_310465.2| AGAP000616-PA [Anopheles gambiae str. PEST]
 gi|116130339|gb|EAA06390.2| AGAP000616-PA [Anopheles gambiae str. PEST]
          Length = 407

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 187 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 238


>gi|296197533|ref|XP_002746324.1| PREDICTED: ATPase WRNIP1-like isoform 3 [Callithrix jacchus]
          Length = 620

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 263 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 317

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 318 SFFKRKTILFIDEIHRFNKSQQD 340


>gi|294782592|ref|ZP_06747918.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 1_1_41FAA]
 gi|294481233|gb|EFG29008.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 1_1_41FAA]
          Length = 338

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 41/183 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + +++ ++         L+           LE+ D+L  ++   
Sbjct: 55  ILLYGPPGLGKTTLAGVIANEMQANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINS--------IHQYDSSLLMTARTFPV-SWGVCLP-----------DLCS---RLK 163
            H +N+          +     ++  +     S  + LP            L S   R +
Sbjct: 113 -HRLNNTVEEILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDR 171

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209
                K+   + D +  +I++      + I ++              +A  +++R+ R  
Sbjct: 172 FGVSHKMEYYNIDEIRAIIIRGAKILGVKISEEGAIEISKRSRGTPRIANRLLKRV-RDY 230

Query: 210 VFA 212
              
Sbjct: 231 CEI 233


>gi|270668822|ref|ZP_06222556.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae HK1212]
 gi|270316646|gb|EFA28449.1| chromosomal replication initiator protein DnaA [Haemophilus
           influenzae HK1212]
          Length = 148

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 40  RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90
            D+ +   + + A  +   +   P  PS     L G +G GK+ L +     I +DK  +
Sbjct: 62  FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 121

Query: 91  TRF 93
              
Sbjct: 122 RVL 124


>gi|258517288|ref|YP_003193510.1| IstB domain-containing protein ATP-binding protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780993|gb|ACV64887.1| IstB domain protein ATP-binding protein [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 261

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 30/139 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           + +VGP+G+GK+ LA     +   T   ++   +   L+DT +P                
Sbjct: 117 LYIVGPTGTGKTHLAYAIISQLIQTHMVSVVSCIVPELMDTLRPQNNRNEAEERFRLIKN 176

Query: 111 ---VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV-CLPDL----- 158
              VLL+D+     ++    +L  IIN+ +      ++T+        V    +L     
Sbjct: 177 TELVLLDDLGAEKESEWVVERLLVIINARYSNMVPTIITSNIPLDLLSVDKDRNLILDWQ 236

Query: 159 --CSRLKAATVVKISLPDD 175
              SR++    + +   DD
Sbjct: 237 RIVSRIREMCHLVLVDGDD 255


>gi|238917273|ref|YP_002930790.1| putative ATPase [Eubacterium eligens ATCC 27750]
 gi|238872633|gb|ACR72343.1| putative ATPase [Eubacterium eligens ATCC 27750]
          Length = 455

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 24/155 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           VI  GP G+GK+ LA I ++ + +      A       ++       +++  +    T L
Sbjct: 70  VIFYGPPGTGKTTLARIIANTTSAEFCQVNATVAGKKDMEEVVAKAKDNL-GMYGRKTIL 128

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + + ++   +
Sbjct: 129 FVDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LISR---SIIFELKPLE 184

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIV 202
            D ++ +I +   D        +  ID     ++ 
Sbjct: 185 KDDIKTIIKRAVYDEKKGMGSYKAVIDDDALEFLA 219


>gi|146095326|ref|XP_001467545.1| 26S protease regulatory subunit [Leishmania infantum JPCM5]
 gi|321398878|emb|CBZ08327.1| putative 26S protease regulatory subunit [Leishmania infantum
           JPCM5]
 gi|322496221|emb|CBZ31293.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 396

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     +A S+    I     V+ E
Sbjct: 173 PPKGVLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIRE 224


>gi|32477050|ref|NP_870044.1| chromosomal replication initiator protein dnaA [Rhodopirellula
           baltica SH 1]
 gi|32447598|emb|CAD79197.1| chromosomal replication initiator protein dnaA [Rhodopirellula
           baltica SH 1]
          Length = 420

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 51/205 (24%)

Query: 64  SRVVILVGPSGSGKS----CLA------NIWSD--------------------------- 86
           SR ++LVG  G+GK+     L+      N+W                             
Sbjct: 95  SRPMLLVGQPGTGKTALALHLSKRMSISNVWEAMEMDKDTAQGGPSGVTSRVLSSRVLYQ 154

Query: 87  ------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQYD 137
                 +  ++   +         +DT   ++L+D+ L+        +L   + +     
Sbjct: 155 PAIDFAREFASSIDSKDMPRFREKLDTVPILVLDDLHLIADKGPAQEELAQRLEARDAEG 214

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              ++T R  P       P L SR      V +  P  D    ++ ++       ++ + 
Sbjct: 215 RLTIVTCRRLPSEVRGLRPALVSRTLPGLTVTLHPPAGDTRRTILRELMLAHLPDVEPEA 274

Query: 198 AAYIVQRME-----RSLVFAEKLVD 217
            + +   +      R+   A K V 
Sbjct: 275 LSLLDAGLPAESTVRAFESAIKQVA 299


>gi|15669365|ref|NP_248170.1| proteasome-activating nucleotidase [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2492524|sp|Q58576|PAN_METJA RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|1591803|gb|AAB99179.1| proteasome regulatory AAA-ATPase [Methanocaldococcus jannaschii DSM
           2661]
          Length = 430

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ LA   + ++ +T    +   L    I     ++ +
Sbjct: 203 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKD 254


>gi|316973947|gb|EFV57489.1| putative midasin [Trichinella spiralis]
          Length = 4042

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD---KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
            +V+++ GP G GKS L   ++    + R      +++ +D       K +LLED+D   
Sbjct: 123 EKVLVVYGPGGCGKSWLLRSFAHSVKRCRDLVVLQLSEHMDVKAAKMGKWLLLEDVDCSP 182

Query: 121 FNDTQLFHIINSIHQYDSSLL 141
               +L H + ++ +    L+
Sbjct: 183 V---ELLHQLGAMIENRQLLV 200


>gi|193632027|ref|XP_001948697.1| PREDICTED: 26S protease regulatory subunit 6A-like [Acyrthosiphon
           pisum]
          Length = 431

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 212 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 263


>gi|119872197|ref|YP_930204.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum islandicum
           DSM 4184]
 gi|119673605|gb|ABL87861.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum islandicum DSM
           4184]
          Length = 731

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 70/208 (33%), Gaps = 47/208 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + ++L+GP G+GK+ LA   ++++ +   +                 L  I  + +  
Sbjct: 212 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 271

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 272 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDAIDPA 331

Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           L      D   R        I+ PD     +++  +   R + +   +    +  M    
Sbjct: 332 LRRPGRFD---REIW-----INPPDFKGRYEIL--LIHTRNMPLAPDVDLRKLAEMTHGF 381

Query: 210 VFAEKLVDKMDNLAL--SRGMGITRSLA 235
             A+  +  +   A   +    I   L 
Sbjct: 382 SGAD--LAALAREAAMSALRRAIQSGLI 407



 Score = 36.7 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L GP G+GK+ LA   + +S +   +
Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFIA 518


>gi|27229310|ref|NP_758835.1| ATPase WRNIP1 [Rattus norvegicus]
 gi|73920471|sp|Q8CG07|WRIP1_RAT RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1
 gi|25989624|gb|AAN15750.1| Werner syndrome-interacting protein-like protein [Rattus
           norvegicus]
 gi|68534260|gb|AAH98652.1| Werner helicase interacting protein 1 [Rattus norvegicus]
 gi|149045258|gb|EDL98344.1| Werner helicase interacting protein 1, isoform CRA_b [Rattus
           norvegicus]
          Length = 660

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 28/148 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311

Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             F           H  N   Q          +  L+ A T   S+ V    L SR    
Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNTA-LLSR---C 367

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193
            V+ +     + +  ++++      I +
Sbjct: 368 RVIVLEKLPVEAMVTILMRAINSLGIHV 395


>gi|323475184|gb|ADX85790.1| 26S proteasome subunit P45 family [Sulfolobus islandicus REY15A]
          Length = 393

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +S +     +A       +     ++ E
Sbjct: 167 PPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRE 218


>gi|319790480|ref|YP_004152113.1| Holliday junction DNA helicase RuvB [Thermovibrio ammonificans
           HB-1]
 gi|317114982|gb|ADU97472.1| Holliday junction DNA helicase RuvB [Thermovibrio ammonificans
           HB-1]
          Length = 320

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 21/159 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR-------STRFSNIAKSLDSILIDTRKPVL-LE 114
           P   ++L GP G+GK+ LA I + + R       +         L  +       +L ++
Sbjct: 34  PLDHILLYGPPGTGKTTLATILASELRVGLKLLSAPTVERKGDLLGVLTTLNEGDILFID 93

Query: 115 DIDLLDFN-DTQLFHIINSIHQY---DSSLLMTARTFP-------VSWGVCLPDLCSRLK 163
           +I  L  + +  L+  +              ++    P           +  P L SR  
Sbjct: 94  EIHRLPRSIEEMLYTAMEDFRVDVIVGGKRAVSFELPPFTLVGATTRLNLITPPLRSRFG 153

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
               +++  P +  L++V  +     ++ + +     + 
Sbjct: 154 IVCRLELYSPRE--LKEVARRGAEKLKLNLTEGALELLA 190


>gi|317507132|ref|ZP_07964892.1| ATPase [Segniliparus rugosus ATCC BAA-974]
 gi|316254578|gb|EFV13888.1| ATPase [Segniliparus rugosus ATCC BAA-974]
          Length = 449

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 27/156 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD-------------SILIDTRKPVLL 113
           V+L GP G+GK+ +A++ S  +     +  A +                +    R  + +
Sbjct: 48  VVLHGPPGTGKTTIASLLSSATGREFVALSALTAGVKEVREVIEDARMRLAAGVRTVLFI 107

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  ++   LL+ A T    + V  P L SR   + V+++  
Sbjct: 108 DEVHRFSKTQQDALL----AAVEHQIVLLVAATTENPGFAVVSP-LLSR---SLVLELRP 159

Query: 173 PDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203
              + L+ +I +  AD R     + +  +   ++++
Sbjct: 160 LAREDLDALISRALADERGYGGSVALSDEAREHLLR 195


>gi|312086086|ref|XP_003144939.1| ATPase [Loa loa]
 gi|307759896|gb|EFO19130.1| ATPase [Loa loa]
          Length = 737

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 68/196 (34%), Gaps = 34/196 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR-- 108
           P   ++L GP G  K+ +A   + +SR            S       +++  +    R  
Sbjct: 505 PPSGILLYGPPGCSKTLIARAIASQSRMNFLAVKGPELFSKWVGESERAVRELFRRARQV 564

Query: 109 KPVLL--EDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            P ++  ++ID +  N              TQL   ++ + +    +++ A   P     
Sbjct: 565 APAIIFFDEIDAVGANRGDRNESHVGERVLTQLLTELDGLEEKGDVMVLAATNRPDRLDS 624

Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L  L   R      + + LPD++   +++       ++ +D  +     +    S    
Sbjct: 625 AL--LRPGRFN--LTIHVPLPDEETRLEILRIRLNHMKVNVDLDVEDIGKRTKGFSGAEV 680

Query: 213 EKLVDKMDNLALSRGM 228
            +L D+    AL    
Sbjct: 681 VELCDQAVREALLENR 696


>gi|260941976|ref|XP_002615154.1| hypothetical protein CLUG_05169 [Clavispora lusitaniae ATCC 42720]
 gi|238851577|gb|EEQ41041.1| hypothetical protein CLUG_05169 [Clavispora lusitaniae ATCC 42720]
          Length = 431

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 34/150 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 161 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLFTMAREN 220

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWGV 153
                 ++++D L                T+L   +N + +     L++ A   P  W +
Sbjct: 221 KPSIIFIDEVDALCGPRGEGESEASRRIKTELLVQMNGVGNDSGGVLVLGATNIP--WQL 278

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
              D   R +    + I+LPD +  +++  
Sbjct: 279 ---DAAVRRRFERRIYIALPDIEARKRMFE 305


>gi|227828122|ref|YP_002829902.1| proteasome-activating nucleotidase [Sulfolobus islandicus M.14.25]
 gi|227830829|ref|YP_002832609.1| proteasome-activating nucleotidase [Sulfolobus islandicus L.S.2.15]
 gi|229579725|ref|YP_002838124.1| proteasome-activating nucleotidase [Sulfolobus islandicus
           Y.G.57.14]
 gi|229585361|ref|YP_002843863.1| proteasome-activating nucleotidase [Sulfolobus islandicus M.16.27]
 gi|238620322|ref|YP_002915148.1| proteasome-activating nucleotidase [Sulfolobus islandicus M.16.4]
 gi|284998344|ref|YP_003420112.1| 26S proteasome subunit P45 family [Sulfolobus islandicus L.D.8.5]
 gi|259535094|sp|C3MZI6|PAN_SULIA RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|259535097|sp|C4KIR6|PAN_SULIK RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|259535101|sp|C3MRF1|PAN_SULIL RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|259535105|sp|C3MY47|PAN_SULIM RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|259535113|sp|C3N7K8|PAN_SULIY RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|227457277|gb|ACP35964.1| 26S proteasome subunit P45 family [Sulfolobus islandicus L.S.2.15]
 gi|227459918|gb|ACP38604.1| 26S proteasome subunit P45 family [Sulfolobus islandicus M.14.25]
 gi|228010440|gb|ACP46202.1| 26S proteasome subunit P45 family [Sulfolobus islandicus Y.G.57.14]
 gi|228020411|gb|ACP55818.1| 26S proteasome subunit P45 family [Sulfolobus islandicus M.16.27]
 gi|238381392|gb|ACR42480.1| 26S proteasome subunit P45 family [Sulfolobus islandicus M.16.4]
 gi|284446240|gb|ADB87742.1| 26S proteasome subunit P45 family [Sulfolobus islandicus L.D.8.5]
 gi|323477916|gb|ADX83154.1| 26S proteasome subunit P45 family [Sulfolobus islandicus HVE10/4]
          Length = 393

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +S +     +A       +     ++ E
Sbjct: 167 PPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRE 218


>gi|218283047|ref|ZP_03489149.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989]
 gi|218216241|gb|EEC89779.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989]
          Length = 604

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 45/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 190 ALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAREKAPCI 249

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +         + ND       QL   ++        +L+ A   P S     
Sbjct: 250 VFIDEIDTIGKKRDGAGMNGNDEREQTLNQLLAEMDGFDGSKGVVLLAATNRPDSLDPAL 309

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 310 TRPGRFDRRIPVELPDLAGR 329


>gi|161507635|ref|YP_001577589.1| recombination factor protein RarA [Lactobacillus helveticus DPC
           4571]
 gi|160348624|gb|ABX27298.1| putative chromosome segregation helicase [Lactobacillus helveticus
           DPC 4571]
          Length = 441

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 40/148 (27%)

Query: 6   EDYSFFVPDKQKNDQP---KNKEEQLFFSFPRCLGISRDDLLVHSAI-----EQAVRLID 57
           ++ S F    Q  + P   + + + L            DD  V         +    LI+
Sbjct: 2   KEESLFSLANQNENTPLADRVRPQNL------------DDF-VGQENLIGHGKILRDLIE 48

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
                    +IL GP G+GK+ LA I + ++++   +  A +     I      ++E+ +
Sbjct: 49  KDR---VPSLILWGPPGTGKTTLAEIIAKRTKAHFITFSAVTSSIKDIRK----IMEEAE 101

Query: 118 L---------LDFNDTQLFHIINSIHQY 136
                     +  ++    H  N   Q 
Sbjct: 102 QNRQFGERNIVFIDEI---HRFNKAQQD 126


>gi|37525550|ref|NP_928894.1| recombination factor protein RarA [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784978|emb|CAE13896.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 447

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I    +++   R S +   +  I     K       +      T
Sbjct: 53  MILWGPPGTGKTTLAEIIGHYAQADVERISAVTSGIKEIRESIEKA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKK----LAAYIVQRMERSLVFAEKLVDKM 219
                + +E+V+ +  +D  R      I + +     +A  +     RSL   E + D  
Sbjct: 163 KSLTTEEIEQVLEQAMSDKERGYHGQNIVLPENTRHMIAELVAGDARRSLNLLEMMADMA 222

Query: 220 DNLALSRGMGITRSLAAEV 238
           +  A      +T +L  EV
Sbjct: 223 ETNA-QGQRVLTPALLKEV 240


>gi|187251382|ref|YP_001875864.1| DNA replication initiation ATPase [Elusimicrobium minutum Pei191]
 gi|186971542|gb|ACC98527.1| ATPase involved in DNA replication initiation [Elusimicrobium
           minutum Pei191]
          Length = 215

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 24/148 (16%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA--NI------- 83
           P  +  + +D  V    +       ++   P   + + GP+G+GK+ LA   I       
Sbjct: 20  PVHMAYTFEDFEVTGPTKNNYDACRAFVENPLN-LYVYGPAGNGKTRLAITAIKNRLLKY 78

Query: 84  ---------WSDKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133
                    W D   +        S + I  +  RK +L++DI     N+T    II   
Sbjct: 79  ADEYGRVIFWEDFKNAVMADMRNDSTEYIDSLARRKCLLIDDIFRNGVNETTKAAIIRLF 138

Query: 134 ----HQYDSSLLMTARTFPVSWGVCLPD 157
               +     L++T+          L D
Sbjct: 139 EKWGNHGKKKLIVTSNKDIEQLSKILED 166


>gi|118431889|ref|NP_148637.2| cell division protein CDC48 [Aeropyrum pernix K1]
 gi|116063212|dbj|BAA81490.2| cell division control protein 48, AAA family [Aeropyrum pernix K1]
          Length = 737

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + ++L GP G+GK+ LA   ++++ +   S               + L  I  + +  
Sbjct: 221 PPKGILLYGPPGTGKTLLAKAVANEADAYFISINGPEIMSKYYGESEQRLREIFEEAKKN 280

Query: 109 --KPVLLEDIDLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + +++ A   P +    
Sbjct: 281 APSIIFIDEIDAIAPKRDEVVGEVERRVVAQLLALMDGLEARGNVIVIAATNRPNAIDPA 340

Query: 155 L 155
           L
Sbjct: 341 L 341



 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R V+L GP G+GK+ LA   + +S +   +
Sbjct: 494 PPRGVLLFGPPGTGKTLLAKAVATESGANFIA 525


>gi|20093924|ref|NP_613771.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19]
 gi|19886871|gb|AAM01701.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19]
          Length = 1249

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 62/162 (38%), Gaps = 32/162 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G+GK+ LA   +++  +  +S                 I +  +    +
Sbjct: 248 PPKGVLLYGPPGTGKTLLAKAVANECGAKFYSINGPEIMSKYYGESEARIREVFEEARKN 307

Query: 107 TRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
               + +++ID +                QL  +++ + + +  +++ +   P       
Sbjct: 308 APAIIYIDEIDAIAPKRGETGEVERRVVAQLLTLMDGLSEDERVVVLASTNRPDDID--- 364

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           P L    +    ++I +PD +  ++++     D  + +   +
Sbjct: 365 PALRRPGRFDKEIEIGVPDKEGRKEILQIHTRD--MPLADDV 404



 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   +++S +   +
Sbjct: 590 PPKGILLYGPPGTGKTLLAKAVANESDANFIA 621


>gi|332246193|ref|XP_003272237.1| PREDICTED: ATPase WRNIP1 isoform 2 [Nomascus leucogenys]
          Length = 592

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 289

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 290 SFFKRKTILFIDEIHRFNKSQQD 312


>gi|330791557|ref|XP_003283859.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum]
 gi|325086245|gb|EGC39638.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum]
          Length = 851

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P + ++L GP G+GK+ LA I S+++ +T F
Sbjct: 328 PPKGILLYGPPGTGKTLLARIVSNQTNATLF 358


>gi|302185003|ref|ZP_07261676.1| recombination factor protein RarA [Pseudomonas syringae pv.
           syringae 642]
          Length = 440

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +   +  A       I     V  +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLAKLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      RQ+ +  +  A ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGTRQLTLSDEGFAMLMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDIGLLQSLLGDSRR 239


>gi|281338564|gb|EFB14148.1| hypothetical protein PANDA_011417 [Ailuropoda melanoleuca]
          Length = 719

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LAN  + +         A  +                +  + +
Sbjct: 248 PPRGVLLHGPPGCGKTLLANAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSN 307

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++ +    L++ A   P + 
Sbjct: 308 APCVLFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNTMAETAQVLVIGATNRPDAL 367

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 368 DPALR------RAGRFDREICLGIPDEASRERILRTLC--RKLRLPES 407


>gi|218528117|ref|YP_002418933.1| IstB domain protein ATP-binding protein [Methylobacterium
           chloromethanicum CM4]
 gi|218520420|gb|ACK81005.1| IstB domain protein ATP-binding protein [Methylobacterium
           chloromethanicum CM4]
          Length = 243

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 36/150 (24%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVR-------LIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           FP    ++  DL         VR       L D      SR  +L+G +GSGK+ LA   
Sbjct: 65  FPVLKTLAEFDLTASPVNAALVRDLHQGSFLTD------SRNAVLIGGTGSGKTHLAIAI 118

Query: 85  -----SDKSRSTRFSNIAKSLDSILIDTRK------PVLLEDIDLLDFND---------- 123
                 ++    RF N    ++ +  + R          L  +DL+  ++          
Sbjct: 119 GANCVREREARVRFFNTVDLVNQLEAEARAGKAGRLASQLARVDLVILDELGYLPFPRAG 178

Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              LFH+++ +++  +S+++T       W 
Sbjct: 179 GQMLFHLVSRLYER-TSVIVTTNLPFGEWP 207


>gi|310750391|ref|NP_001073044.2| nuclear valosin-containing protein-like [Gallus gallus]
          Length = 844

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 42/166 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R  +L GP G GK+ LA   + +         A  +                D  +++
Sbjct: 291 PPRGFLLHGPPGCGKTLLAQAIAGELELPMLKVAATEMVSGVSGESEQKLRELFDQAVLN 350

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHI---INSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL      +N++      L++ A   P S 
Sbjct: 351 APCVLFIDEIDAITPKREVASKDMERRIVAQLLTCLDDLNNVAATAQVLVIGATNRPDSL 410

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFID 194
               P L    +A      + + +PD+   EK++  +   R++ + 
Sbjct: 411 D---PALR---RAGRFDREICLGIPDEAAREKILQTLC--RKLKLP 448


>gi|156551619|ref|XP_001600109.1| PREDICTED: similar to AT01057p [Nasonia vitripennis]
          Length = 751

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +  +T FS  A SL S  +   + ++
Sbjct: 509 PARGLLLFGPPGNGKTLLARAVATQCNATFFSISAASLTSKYVGDGEKLV 558


>gi|229543042|ref|ZP_04432102.1| AAA ATPase central domain protein [Bacillus coagulans 36D1]
 gi|229327462|gb|EEN93137.1| AAA ATPase central domain protein [Bacillus coagulans 36D1]
          Length = 442

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 21/144 (14%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
            +I+         +I  GP G GK+ LA I +++++S   +  A +     I   + V+ 
Sbjct: 44  EMIEHDR---LSSMIFWGPPGVGKTTLAKIIANQTQSEFINFSAVTSG---IKDIRNVMK 97

Query: 114 EDIDLLDFNDTQ-LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCS 160
           E  +     +   LF    H  N           +  S +L+ A T   S+ V    L S
Sbjct: 98  EAEERRQLGEKTILFLDEIHRFNKAQQDAFLPYVENGSIILIGATTENPSFEVNSA-LLS 156

Query: 161 RLKAATVVKISLPDD-DFLEKVIV 183
           R K   + K++  +  + L++ IV
Sbjct: 157 RTKVFVLHKLTSSEIVELLKQAIV 180


>gi|15679029|ref|NP_276146.1| ATP-dependent 26S protease regulatory subunit 8
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|3334301|sp|O27092|PRS2_METTH RecName: Full=Putative 26S protease regulatory subunit homolog
           MTH_1011
 gi|2622113|gb|AAB85507.1| ATP-dependent 26S protease regulatory subunit 8
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 372

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 72/199 (36%), Gaps = 37/199 (18%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSIL 104
           D +  W  R V+  G  G+GK+ LA   +++ +                 + A+ +  + 
Sbjct: 150 DRFRDWAPRNVLFHGSPGTGKTMLAKSLANELKVPLYLIKATSLIGEHVGDGARQIHELY 209

Query: 105 IDTRKP----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTF 147
               K     + ++++D +  +                L   ++ I+Q    + + A   
Sbjct: 210 ELASKTAPSVIFIDEMDAIGLDRRYQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNN 269

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P      +    SR +     K+  PDD+  + ++ K      + +D  +    + ++ R
Sbjct: 270 PELLDKAI---RSRFEEEIEFKL--PDDEERKLMLEKYIETMPLKVDFPVDK--LVKLTR 322

Query: 208 SLVFAEKLVDKMDNLALSR 226
            +     + D++   AL R
Sbjct: 323 EMSG-RDIKDRVLKTALHR 340


>gi|332019399|gb|EGI59885.1| 26S protease regulatory subunit 6A [Acromyrmex echinatior]
          Length = 414

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 194 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 245


>gi|326442050|ref|ZP_08216784.1| transposase [Streptomyces clavuligerus ATCC 27064]
          Length = 503

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 20/106 (18%)

Query: 67  VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAK--------------SLDSILIDTR 108
           V+L+GP GSG + LA             TRF+  A+              + + +++D  
Sbjct: 346 VVLLGPPGSGTTHLAVALGTRACQAGHGTRFATAAEWVARLTCAHAEGRLTEELVVLDRY 405

Query: 109 KPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWG 152
             ++++ +  + F+     L H + S      S+++TA      W 
Sbjct: 406 ALLIVDGVGAVPFDTESTRLLHRLVSHRYARGSVVVTADRPFGRWS 451


>gi|319892681|ref|YP_004149556.1| Uncharacterized ATPase (AAA family) associated with cysteine
           desulfurase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162377|gb|ADV05920.1| Uncharacterized ATPase (AAA family) associated with cysteine
           desulfurase [Staphylococcus pseudintermedius HKU10-03]
          Length = 423

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 34/180 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           +I  GP G GK+ +A   +  +          +    ++   +D   +  +  +LL++I 
Sbjct: 43  MIFYGPPGIGKTSIAQAIAGSTAFKFRQLNAVTNTKKDMQMIVDEAKMSGQVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR   A + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELFPL 151

Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
           D + ++  +     D  R +      ID     Y   +   S       ++ ++   LS 
Sbjct: 152 DKNDIKVALNHALEDEERGLKQFDASIDDDAFEYFATQ---SQGDVRSALNALELAVLSA 208


>gi|316968483|gb|EFV52755.1| putative ATPase, AAA family [Trichinella spiralis]
          Length = 869

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 294 PPRGILLYGPPGCGKTLIARAVANETGAFFFLLNGPEIMSKLAGESESNLRKAFEECEKN 353

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 Q+  +++ + Q    +++ A   P S    
Sbjct: 354 APSILFIDEIDAITPKREKTHGEVERRIVSQMLTLMDGLKQRSHVIVIAATNRPNSIDPA 413

Query: 155 L 155
           L
Sbjct: 414 L 414



 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121
           PSR V+  GP G GK+ LA   + + ++   S     L ++     +  + +  D     
Sbjct: 570 PSRGVLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKARAA 629

Query: 122 NDTQLF--HIINSIHQYDSSL 140
               LF   + +       SL
Sbjct: 630 APCVLFFDELDSIAKARGGSL 650


>gi|296126532|ref|YP_003633784.1| ATPase AAA [Brachyspira murdochii DSM 12563]
 gi|296018348|gb|ADG71585.1| AAA ATPase central domain protein [Brachyspira murdochii DSM 12563]
          Length = 435

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 25/178 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G GKS +A+I + K++S      A   +  + + R+ +   + +L +   T L
Sbjct: 55  MVFFGPPGVGKSTVASIIAKKTKSEYIKLNAVLSN--VSEIREAIKKAEKNLENRKKTIL 112

Query: 127 F----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           F    H  N   Q        + S+++   T    +      L SR+    + +    DD
Sbjct: 113 FIDEIHRFNKSQQDALLPAVENGSVILIGSTTQNPYFYLNNALLSRI---MLFEFRNLDD 169

Query: 176 DFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           + + + ++K   D R +      ++    + IV+    S     K    ++   L+  
Sbjct: 170 NDIREALLKAITDKRGLGEDDVAVEDGAVSLIVRY---SHGDVRKAFTYLEASYLATQ 224


>gi|225703928|gb|ACO07810.1| 26S protease regulatory subunit 4 [Oncorhynchus mykiss]
          Length = 440

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 67/208 (32%), Gaps = 49/208 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRAVGSELIQKYLGDGPKLVRELFRVAEEH 277

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146
                 +++ID +                  L  ++N +     + D  ++M        
Sbjct: 278 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTLLELLNQLDGFDSRGDVKVIMATNRIETL 337

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA--AYIVQR 204
            P        D          ++  LPD+    ++     +   + +   +     I+ +
Sbjct: 338 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFQIHTSR--MTVADDVILDDLILAK 387

Query: 205 MERSLVFAEKLVDKMDNLALSRGM-GIT 231
            + S    + +  +   +AL      +T
Sbjct: 388 DDLSGADIKAICTEAGLMALGGRRMKVT 415


>gi|158295544|ref|XP_316268.4| AGAP006205-PA [Anopheles gambiae str. PEST]
 gi|157016089|gb|EAA10786.4| AGAP006205-PA [Anopheles gambiae str. PEST]
          Length = 1020

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R  +L GP GSGK+ LA   + +         A  L + +    +  + +  +   
Sbjct: 338 PPRGFLLHGPPGSGKTLLAQAIAGQLNVRLIEVPATELVAGVSGESEERIRDVFEQAA 395



 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 766 PSGVL-LCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAV 814


>gi|332246195|ref|XP_003272238.1| PREDICTED: ATPase WRNIP1 isoform 3 [Nomascus leucogenys]
          Length = 587

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 289

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 290 SFFKRKTILFIDEIHRFNKSQQD 312


>gi|307206656|gb|EFN84628.1| Spastin [Harpegnathos saltator]
          Length = 578

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +  +T FS  A SL S  +   + ++
Sbjct: 336 PARGLLLFGPPGNGKTLLARAVATQCNATFFSISAASLTSKYVGEGEKLV 385


>gi|307190289|gb|EFN74381.1| 26S protease regulatory subunit 6A [Camponotus floridanus]
 gi|322796826|gb|EFZ19244.1| hypothetical protein SINV_06515 [Solenopsis invicta]
          Length = 428

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|289740289|gb|ADD18892.1| 26S proteasome regulatory complex ATPase RPT5 [Glossina morsitans
           morsitans]
          Length = 427

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 207 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 258


>gi|219851580|ref|YP_002466012.1| proteasome-activating nucleotidase [Methanosphaerula palustris
           E1-9c]
 gi|254783493|sp|B8GGN4|PAN_METPE RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|219545839|gb|ACL16289.1| 26S proteasome subunit P45 family [Methanosphaerula palustris
           E1-9c]
          Length = 412

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++ +     +   L    I     ++ E
Sbjct: 186 PPKGVLLHGPPGTGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRE 237


>gi|91087475|ref|XP_967673.1| PREDICTED: similar to 26S protease regulatory subunit 6a [Tribolium
           castaneum]
 gi|270010662|gb|EFA07110.1| hypothetical protein TcasGA2_TC010100 [Tribolium castaneum]
          Length = 426

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 206 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 257


>gi|54287936|gb|AAV31415.1| putative 26S protease regulatory subunit 6A [Toxoptera citricida]
          Length = 431

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 212 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 263


>gi|117925981|ref|YP_866598.1| IstB ATP binding domain-containing protein [Magnetococcus sp. MC-1]
 gi|117609737|gb|ABK45192.1| IstB domain protein ATP-binding protein [Magnetococcus sp. MC-1]
          Length = 239

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 33/148 (22%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVR------LIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           FP    +   D    SA E  +R       +D      +  +ILVG +G+GK+ LA   +
Sbjct: 65  FPSQKNLDSFDFTASSANEGRIRTLYDGEFLDG-----AGNIILVGGTGTGKTHLAIAVA 119

Query: 86  D-------KSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND-----------T 124
                   + R     ++   L+    D     L E +    LL  ++            
Sbjct: 120 ANCIRLGKRCRYFSVVDLVNKLEREQADGLAGRLAEKLLRTHLLVLDELGYRPFSKTGGA 179

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWG 152
            LFH+I+ +++  +SL++T       W 
Sbjct: 180 LLFHLISKLYE-QTSLIVTTNLTFGEWP 206


>gi|328768472|gb|EGF78518.1| hypothetical protein BATDEDRAFT_37257 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 434

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + ++ +         L  + I     ++          
Sbjct: 214 PPKGCLMYGPPGTGKTLLARACAAQTNACFLKLAGPQLVQMFIGDGAKLVRDAFNLAKEK 273

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 +++ID +                  +  ++N +      D   ++ A       
Sbjct: 274 APAIIFIDEIDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRIDIL 333

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++   P+++   +++      R++ +   +
Sbjct: 334 DPAL--LRSGRLD--RKIEFPHPNEEARARIMQ--IHSRKMTVSPDV 374


>gi|312622691|ref|YP_004024304.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203158|gb|ADQ46485.1| AAA ATPase central domain protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 441

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 59/138 (42%), Gaps = 23/138 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFND 123
           +IL GP G+GK+ +A++ ++ +  T F  I  ++  +    +   ++E+           
Sbjct: 55  IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEAKFEFTQTGKK 110

Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N +         +    +L+ A T    + V    L SR   + V ++ 
Sbjct: 111 TILFIDEIHRFNKLQQDALLPSVEEGVIILIGATTENPFYEVNKA-LVSR---SLVFELF 166

Query: 172 LPDDDFLEKVIVKMFADR 189
              ++ + K+I +  +D+
Sbjct: 167 PLKEEDILKIIERAISDK 184


>gi|307199279|gb|EFN79932.1| 26S protease regulatory subunit 4 [Harpegnathos saltator]
          Length = 486

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 45/206 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 264 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 323

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146
                 +++ID +                  +  ++N +     + D  ++M        
Sbjct: 324 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVVMATNRIETL 383

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          ++  LPD+    ++     +   +  D  LA  I+ + +
Sbjct: 384 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFNIHTSRMTLAPDVNLAELIMAKDD 435

Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231
            S    + +  +   +AL      +T
Sbjct: 436 LSGADIKAICTEAGLMALRERRMKVT 461


>gi|307197075|gb|EFN78443.1| 26S protease regulatory subunit 6A [Harpegnathos saltator]
          Length = 386

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 166 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 217


>gi|298252773|ref|ZP_06976567.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gardnerella vaginalis 5-1]
 gi|297533137|gb|EFH72021.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Gardnerella vaginalis 5-1]
          Length = 462

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 46/209 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           V+L GP G GK+ LA I + +S          ++  K + ++L    + ++       + 
Sbjct: 62  VVLFGPPGVGKTTLAYIVARQSGRVFEELSAVTSGVKDVRAVLDRAHERLV------SNG 115

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 116 QETVLFIDEVHRFSKSQQDALLPSVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 171

Query: 170 ISLPDDDFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-- 222
           ++    + L  +I +        + Q+ I+      I+ R+  S   A K +  ++    
Sbjct: 172 LASLSVEDLHTLIERALTSENGLNNQLKINDDAIDSII-RL--SGGDARKTLTILEAAAG 228

Query: 223 ------ALSRGMG---ITRSLAAEVLKET 242
                 AL  G     IT  + + V+  T
Sbjct: 229 AVTGDVALQHGKKKPVITADIVSNVMDTT 257


>gi|291409441|ref|XP_002721014.1| PREDICTED: Werner helicase interacting protein [Oryctolagus
           cuniculus]
          Length = 589

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 186 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 240

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 241 SFFKRKTILFIDEIHRFNKSQQD 263


>gi|227533349|ref|ZP_03963398.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189020|gb|EEI69087.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 448

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 21/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +I  GP G GK+ LA I + ++++    FS +   +  I            +  +  V +
Sbjct: 51  MIFWGPPGVGKTTLARIIARRTKAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 110

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ V    L SR +   V  +   
Sbjct: 111 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 163

Query: 174 DDDFLEKVIVKMFAD-RQ 190
               L  ++ +   D R 
Sbjct: 164 TSAELVDLLQRALKDPRG 181


>gi|255947800|ref|XP_002564667.1| Pc22g06370 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591684|emb|CAP97925.1| Pc22g06370 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 539

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 75/221 (33%), Gaps = 42/221 (19%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94
           LV         LI+         +IL G +G+GK+ +A + +    S             
Sbjct: 141 LVGP-NGILRGLIEQDR---VPSMILWGSAGTGKTTIARVIASLVGSRFVEINSTSSGVA 196

Query: 95  ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                 A++   + +  RK ++  ++I     +   +F       +     L+ A T   
Sbjct: 197 ECKKIFAEARSELGLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENP 253

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQ 203
           S+ V    L SR        ++   D+ +  ++ +              +D++L  Y+ +
Sbjct: 254 SFKVQNA-LLSR---CRTFTLAKLTDEDIISILHRALQVEGPSYSPSELVDEELIQYLAR 309

Query: 204 RMERSLVFAEKLVDK---------MDNLALSRGMGITRSLA 235
             +     +  L++          MD   L     +T++L 
Sbjct: 310 FADGDARTSLNLLELAMDLSKRAGMDKEDL--KRSLTKTLV 348


>gi|191636983|ref|YP_001986149.1| recombination factor protein RarA [Lactobacillus casei BL23]
 gi|190711285|emb|CAQ65291.1| Chromosome segregation helicase (Putative) [Lactobacillus casei
           BL23]
 gi|327381009|gb|AEA52485.1| hypothetical protein LC2W_0149 [Lactobacillus casei LC2W]
 gi|327384185|gb|AEA55659.1| hypothetical protein LCBD_0159 [Lactobacillus casei BD-II]
          Length = 448

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 21/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +I  GP G GK+ LA I + ++++    FS +   +  I            +  +  V +
Sbjct: 51  MIFWGPPGVGKTTLARIIARRTKAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 110

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ V    L SR +   V  +   
Sbjct: 111 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 163

Query: 174 DDDFLEKVIVKMFAD-RQ 190
               L  ++ +   D R 
Sbjct: 164 TSAELVDLLQRALKDPRG 181


>gi|109069425|ref|XP_001090684.1| PREDICTED: ATPase WRNIP1 isoform 3 [Macaca mulatta]
          Length = 665

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339


>gi|83720479|ref|YP_442107.1| recombination factor protein RarA [Burkholderia thailandensis E264]
 gi|167619051|ref|ZP_02387682.1| recombination factor protein RarA [Burkholderia thailandensis Bt4]
 gi|257138292|ref|ZP_05586554.1| recombination factor protein RarA [Burkholderia thailandensis E264]
 gi|83654304|gb|ABC38367.1| ATPase, AAA family protein [Burkholderia thailandensis E264]
          Length = 436

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             +D L +++ K   D     +  D K    +V   +     A + ++ ++  
Sbjct: 163 LTEDELRQLL-KRAQDTALDGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211


>gi|116493737|ref|YP_805471.1| recombination factor protein RarA [Lactobacillus casei ATCC 334]
 gi|239630989|ref|ZP_04674020.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065310|ref|YP_003787333.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Lactobacillus casei str. Zhang]
 gi|116103887|gb|ABJ69029.1| Recombination protein MgsA [Lactobacillus casei ATCC 334]
 gi|239527272|gb|EEQ66273.1| recombination factor protein RarA [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300437717|gb|ADK17483.1| Helicase subunit of the Holliday junction resolvase related ATPase
           [Lactobacillus casei str. Zhang]
          Length = 448

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 21/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +I  GP G GK+ LA I + ++++    FS +   +  I            +  +  V +
Sbjct: 51  MIFWGPPGVGKTTLARIIARRTKAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 110

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ V    L SR +   V  +   
Sbjct: 111 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 163

Query: 174 DDDFLEKVIVKMFAD-RQ 190
               L  ++ +   D R 
Sbjct: 164 TSAELVDLLQRALKDPRG 181


>gi|308510670|ref|XP_003117518.1| CRE-CDC-48.2 protein [Caenorhabditis remanei]
 gi|308242432|gb|EFO86384.1| CRE-CDC-48.2 protein [Caenorhabditis remanei]
          Length = 812

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ K+      +
Sbjct: 242 PPRGILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKN 301

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 302 SPAILFIDEIDAIAPKREKAHGEVEKRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGA 361

Query: 155 L 155
           L
Sbjct: 362 L 362



 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 515 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 571


>gi|229051482|ref|ZP_04194975.1| Transposition helper protein, IS21 [Bacillus cereus AH676]
 gi|229142425|ref|ZP_04270934.1| Transposition helper protein, IS21 [Bacillus cereus BDRD-ST26]
 gi|229176514|ref|ZP_04303943.1| Transposition helper protein, IS21 [Bacillus cereus MM3]
 gi|229199897|ref|ZP_04326482.1| Transposition helper protein, IS21 [Bacillus cereus m1293]
 gi|228583586|gb|EEK41819.1| Transposition helper protein, IS21 [Bacillus cereus m1293]
 gi|228606951|gb|EEK64344.1| Transposition helper protein, IS21 [Bacillus cereus MM3]
 gi|228641033|gb|EEK97355.1| Transposition helper protein, IS21 [Bacillus cereus BDRD-ST26]
 gi|228721872|gb|EEL73323.1| Transposition helper protein, IS21 [Bacillus cereus AH676]
          Length = 238

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 37/140 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++L+GP G GK+ LA  ++ ++    ++      D  +   RK                 
Sbjct: 88  ILLLGPPGVGKTHLAIGFAIEALRQGYTAYYTRADDFITSCRKAEQRGTTSRLVRSLSRC 147

Query: 111 --VLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
             ++++++    F++    LF  I S      S+++T+               S ++   
Sbjct: 148 DVLIIDEMGYFPFDELSADLFFRIISKRYEKGSIILTSN-------------KSYIEWGK 194

Query: 167 VVKISLPDDDFLEKVIVKMF 186
           +      DD     V+ ++ 
Sbjct: 195 IFG----DDVLATAVLDRLL 210


>gi|225164815|ref|ZP_03727041.1| AAA ATPase central domain protein [Opitutaceae bacterium TAV2]
 gi|224800567|gb|EEG18937.1| AAA ATPase central domain protein [Opitutaceae bacterium TAV2]
          Length = 401

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 36/198 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF------SNIAKSLDSILIDTRKPVLLEDIDL 118
             ++  GP G GK+  A   + ++ S         SN+A+  + + +  R P   E   L
Sbjct: 7   GSLLFYGPPGCGKTSFAEAIARQTGSRFVRLNAVMSNVAELREILALARRTP---ESPTL 63

Query: 119 LDFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           L  ++    H  N           +     L+ A T    + V  P L SR   + + ++
Sbjct: 64  LFIDE---LHRFNKSQQDLLLPDVEEGYVRLIGATTHNPGFYVNPP-LLSR---SHLFRL 116

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                D +  V+ +  AD  R +       D K+ A +    +  L  A   ++ +  L+
Sbjct: 117 EPLRADAVATVLTRALADTERGLGNRHHTADAKILADLATLCDGDLRRALNALEVI-ALS 175

Query: 224 LSRGMGITRS----LAAE 237
           L     IT +     A E
Sbjct: 176 LPEAAPITEAELEVFARE 193


>gi|220912773|ref|YP_002488082.1| recombination factor protein RarA [Arthrobacter chlorophenolicus
           A6]
 gi|219859651|gb|ACL39993.1| AAA ATPase central domain protein [Arthrobacter chlorophenolicus
           A6]
          Length = 466

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 23/173 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA++ +          S I   +  +       +   D+       T
Sbjct: 76  LILWGPPGTGKTTLAHVIARGPGRKFVELSAITAGVKDVRRVMDDALTARDLYKTT---T 132

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +    +L+ A T   S+ V  P     L  + ++ +  
Sbjct: 133 VLFLDEIHRFNKAQQDALLPGVENRWVVLVAATTENPSFSVVSPL----LSRSLLLTLKP 188

Query: 173 PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223
             D  +E ++ +  AD R +    +LA   +  + R S   A + +  ++  A
Sbjct: 189 LTDADIEGLLSRAVADPRGLDGKAELAPEALAHLVRLSGGDARRALTALEAAA 241


>gi|166712096|ref|ZP_02243303.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 458

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 73/212 (34%), Gaps = 29/212 (13%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
            L  ++ S     +IL GP G GK+ LA + +  + +  F  I+  L  +  + R+ +  
Sbjct: 49  ALRRAFESGRVHSMILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLP-EVRQVLAE 106

Query: 114 EDIDLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLC 159
            D    D   T LF    H  N   Q          ++L    T              L 
Sbjct: 107 ADQRFADGRRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LL 163

Query: 160 SRLKAATVVKISLPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFA 212
           SR +   +  +S  D  +     +     A+R +      + +     I    +  +  A
Sbjct: 164 SRCRVHVLEGVSPQDIVEALQRAL---HDAERGLGQQTIQVSEASLLEIASAADGDVRRA 220

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
             L++    LA   G  IT     +VL +  +
Sbjct: 221 LTLLEIAAELATGEGGEITPRTLLQVLADRTR 252


>gi|190015588|ref|YP_001967328.1| transposition helper protein, IS21 family [Bacillus cereus]
 gi|217956852|ref|YP_002335946.1| transposition helper protein, IS21 family [Bacillus cereus AH187]
 gi|116584495|gb|ABK00612.1| transposition helper protein, IS21 family [Bacillus cereus]
 gi|217068488|gb|ACJ82736.1| transposition helper protein, IS21 family [Bacillus cereus AH187]
          Length = 252

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 37/140 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++L+GP G GK+ LA  ++ ++    ++      D  +   RK                 
Sbjct: 102 ILLLGPPGVGKTHLAIGFAIEALRQGYTAYYTRADDFITSCRKAEQRGTTSRLVRSLSRC 161

Query: 111 --VLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
             ++++++    F++    LF  I S      S+++T+               S ++   
Sbjct: 162 DVLIIDEMGYFPFDELSADLFFRIISKRYEKGSIILTSN-------------KSYIEWGK 208

Query: 167 VVKISLPDDDFLEKVIVKMF 186
           +      DD     V+ ++ 
Sbjct: 209 IFG----DDVLATAVLDRLL 224


>gi|70943427|ref|XP_741761.1| 26S proteasome regulatory subunit 4 [Plasmodium chabaudi chabaudi]
 gi|56520345|emb|CAH77685.1| 26S proteasome regulatory subunit 4, putative [Plasmodium chabaudi
           chabaudi]
          Length = 293

 Score = 42.8 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 45/206 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 71  PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDH 130

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146
                 +++ID +                  +  ++N +     + D  ++M        
Sbjct: 131 APSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSL 190

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          +++  PD     ++     +   +  D  L  +++ + E
Sbjct: 191 DPALIRPGRIDRK--------IQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 242

Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231
            S    + +  +   LAL      IT
Sbjct: 243 LSGADIKAICTEAGLLALRERRMKIT 268


>gi|330507008|ref|YP_004383436.1| AAA family ATPase [Methanosaeta concilii GP-6]
 gi|328927816|gb|AEB67618.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6]
          Length = 758

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 73/205 (35%), Gaps = 57/205 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G+GK+ LA   +++S +   S                 +    +    +
Sbjct: 242 PPKGVLLHGPPGTGKTMLAKAVANESDAYFISINGPEIMSKYYGESEKALRDLFEEAEKN 301

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           T   + L+++D +                 QL  +++ + +  + +++ +   P +  + 
Sbjct: 302 TPAIIFLDELDSIAPKRGDVTGEVERRVVAQLLSLMDGLKERKNVIVIGSTNRPEALDMA 361

Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA--AYI------ 201
           L      D          +++ +PD +   ++       R + + + +    Y       
Sbjct: 362 LRRPGRFD--------REIELGVPDMEGRLEIFQ--IHTRGMPLHEDVVLEDYAIETYGF 411

Query: 202 ----VQRMERS--LVFAEKLVDKMD 220
               +  + R   +    +++ ++D
Sbjct: 412 VGADIAAVSREAAMNALRRILPQID 436


>gi|327541880|gb|EGF28391.1| chromosomal replication initiator protein dnaA [Rhodopirellula
           baltica WH47]
          Length = 384

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 51/205 (24%)

Query: 64  SRVVILVGPSGSGKS----CLA------NIWSD--------------------------- 86
           SR ++LVG  G+GK+     L+      N+W                             
Sbjct: 59  SRPMLLVGQPGTGKTALALHLSKRMSISNVWEAMEMDKDTAQGGPSGVTSRVLSSRVLYQ 118

Query: 87  ------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQYD 137
                 +  ++   +         +DT   ++L+D+ L+        +L   + +     
Sbjct: 119 PAIDFAREFASSIDSKDMPRFREKLDTVPILVLDDLHLIADKGPAQEELAQRLEARDAEG 178

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              ++T R  P       P L SR      V +  P  D    ++ ++       ++ + 
Sbjct: 179 RLTIVTCRRLPSEVRGLRPALVSRTLPGLTVTLHPPAGDTRRTILRELMLAHLPDVEPEA 238

Query: 198 AAYIVQRME-----RSLVFAEKLVD 217
            + +   +      R+   A K V 
Sbjct: 239 LSLLDAGLPAESTVRAFESAIKQVA 263


>gi|169350137|ref|ZP_02867075.1| hypothetical protein CLOSPI_00879 [Clostridium spiroforme DSM 1552]
 gi|169292920|gb|EDS75053.1| hypothetical protein CLOSPI_00879 [Clostridium spiroforme DSM 1552]
          Length = 330

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 49/208 (23%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
              P   V+L GP G GK+ ++ I +++  +        S++           LE  D+L
Sbjct: 47  RDEPLDHVLLYGPPGLGKTTMSMIIANEMGTNIKITTGPSIEKTGDLVAILTALEPGDVL 106

Query: 120 DFNDTQLFHIINSIHQYDSS---------LLMTARTFPVSWGVCLP------------DL 158
             ++    H +N + +             +++       S  + LP            DL
Sbjct: 107 FIDEI---HRLNKVVEEILYPAMEDFCVDVVIGKEASTRSVRIDLPPFTLVGATTRAGDL 163

Query: 159 CS--RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIV 202
            +  R +   V K+    +D L+ +I +     Q+ +D                +A  + 
Sbjct: 164 SAPLRDRFGIVSKLEYYSEDELKVIIDRTSRVYQMPMDDDAKTALAMRSRGTPRIANRLF 223

Query: 203 QRMERSLV--------FAEKLVDKMDNL 222
           +R+ R             E+ V+ +D L
Sbjct: 224 RRV-RDFAQFNGEEIITKERTVEALDRL 250


>gi|195030434|ref|XP_001988073.1| GH10966 [Drosophila grimshawi]
 gi|193904073|gb|EDW02940.1| GH10966 [Drosophila grimshawi]
          Length = 356

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T+R  P           SR      +++  P +  +  V+        + +  +LA  +V
Sbjct: 168 TSRIIPAI--------RSR---CLGIRVPAPSESDMAAVLQNTCKREGLVLPPELAKRVV 216

Query: 203 QRMERSLVFAEKLVDK 218
            + ER++  A  +++ 
Sbjct: 217 DKSERNMRRALLMLEA 232


>gi|156553813|ref|XP_001604886.1| PREDICTED: similar to 26S protease regulatory subunit 6a [Nasonia
           vitripennis]
          Length = 428

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|118577136|ref|YP_876879.1| AAA ATPase [Cenarchaeum symbiosum A]
 gi|118195657|gb|ABK78575.1| AAA ATPase [Cenarchaeum symbiosum A]
          Length = 728

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 33/159 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK----P 110
           V+L GP G+GK+ LA   +++S +   S                 L  I  + R+     
Sbjct: 214 VLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEAREKAPSI 273

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           + +++ID +                 Q+  +++ +      ++++A   P +     P L
Sbjct: 274 IFVDEIDSIAPKREEVTGEVERRVVSQMLSLMDGLEARGKVIVISATNRPNAID---PAL 330

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               +    ++I +PD    + ++      R + +   +
Sbjct: 331 RRPGRFDREIEIKVPDKKGRKDIL--AIHTRNMPLTDDV 367


>gi|328855781|gb|EGG04906.1| ATP-dependent 26S proteasome regulatory subunit [Melampsora
           larici-populina 98AG31]
          Length = 458

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V++ GP G+GK+ LA   + ++++        SL  + I     ++ +  +L 
Sbjct: 238 PPKGVLMYGPPGTGKTLLARACAAQTKACYLKLAGPSLVQMFIGDGAKLVRDAFELA 294


>gi|325962425|ref|YP_004240331.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3]
 gi|325964152|ref|YP_004242058.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3]
 gi|325964800|ref|YP_004242706.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468512|gb|ADX72197.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470239|gb|ADX73924.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470887|gb|ADX74572.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3]
          Length = 262

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 49/153 (32%)

Query: 30  FSFPRCLGISRDD--------LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           FSF    G+ RD          L  ++                  ++L+GP G+GK+ LA
Sbjct: 79  FSFDHQPGLKRDTIAHLATGAFLTEASN-----------------IVLLGPPGTGKTHLA 121

Query: 82  N-------------------IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
                                W  + ++   S      + + +     ++++++  + F 
Sbjct: 122 TGLGLRATQLGHRVLFATAIDWVARLQAAHQSAR-LPQELVRLRRYGLIIVDEVGYIPFE 180

Query: 123 DTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                  F +++S +++ +SL++T+      WG
Sbjct: 181 QDAANLFFQLVSSRYEH-ASLILTSNLPFARWG 212


>gi|294813543|ref|ZP_06772186.1| IstB domain protein ATP-binding protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326142|gb|EFG07785.1| IstB domain protein ATP-binding protein [Streptomyces clavuligerus
           ATCC 27064]
          Length = 505

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 20/106 (18%)

Query: 67  VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAK--------------SLDSILIDTR 108
           V+L+GP GSG + LA             TRF+  A+              + + +++D  
Sbjct: 348 VVLLGPPGSGTTHLAVALGTRACQAGHGTRFATAAEWVARLTCAHAEGRLTEELVVLDRY 407

Query: 109 KPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWG 152
             ++++ +  + F+     L H + S      S+++TA      W 
Sbjct: 408 ALLIVDGVGAVPFDTESTRLLHRLVSHRYARGSVVVTADRPFGRWS 453


>gi|221504199|gb|EEE29874.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 791

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+R ++L GP GSGKS +A I + ++ +  + 
Sbjct: 512 PARSLLLYGPPGSGKSLVARIIATEAGAMFYD 543


>gi|126322071|ref|XP_001368425.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           1 [Monodelphis domestica]
          Length = 695

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 28/148 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA I ++ S+      +  S  S          + D+     N+ 
Sbjct: 287 PSLILWGPPGCGKTTLAYIIANNSKKNSMRFVTLSATSAKTSD-----VRDVIKQAQNEK 341

Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
             F           H  N   Q          +  L+ A T   S+ V    L SR    
Sbjct: 342 NFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAA-LLSR---C 397

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193
            V+ +     + ++ ++++  +   + +
Sbjct: 398 RVIVLEKLSAEAMKTILMRAVSSLGLRV 425


>gi|123448447|ref|XP_001312954.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121894819|gb|EAY00025.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 630

 Score = 42.8 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKS-RSTRFSNIAKSLDSILIDTRKPVL 112
           P+  +IL GP G GK+ LA   + ++ R+   S     L +  +   +  +
Sbjct: 384 PASGIILYGPPGCGKTLLARAIAHEAYRAAFISVKGPELLNKYLGESESAI 434


>gi|322702975|gb|EFY94593.1| mitochondrial chaperone BCS1 [Metarhizium anisopliae ARSEF 23]
          Length = 842

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 30/121 (24%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDID 117
           R  +L GP G+GKS L +  + +     +   A S+D  +++        R  VLLEDID
Sbjct: 215 RGYLLHGPPGTGKSSLGSALAGEFNLDIYIINAPSVDDQMLEHLFNNLPDRCVVLLEDID 274

Query: 118 LLDFNDTQ----------LFHIINS----IHQYDSSLLMT---------ARTFPVSWGVC 154
            +  +             L  ++N+      Q    L+MT         A   P    V 
Sbjct: 275 AIGTDRQGPGKPRKAALSLSGLLNTLDGVASQEGRILIMTTNHVNNLDEALIRPGRIDVK 334

Query: 155 L 155
           L
Sbjct: 335 L 335


>gi|317177233|dbj|BAJ55022.1| recombination factor protein RarA [Helicobacter pylori F16]
          Length = 391

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIENPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|167761579|ref|ZP_02433706.1| hypothetical protein CLOSCI_03990 [Clostridium scindens ATCC 35704]
 gi|167660722|gb|EDS04852.1| hypothetical protein CLOSCI_03990 [Clostridium scindens ATCC 35704]
          Length = 437

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 27/165 (16%)

Query: 39  SRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           S +D +    +        +LI+         +I  GP G GK+ LA+I + ++++   +
Sbjct: 24  SLEDFVGQEHLLGKGRMLRQLIERDQ---ISSMIFWGPPGVGKTTLASIIAGRTKADFIN 80

Query: 95  NIAKS-----LDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH--------QYDSSLL 141
             A +     +  ++    +   +    +L  ++    H  N           +  S +L
Sbjct: 81  FSAVTSGIKEIKEVMRQAEESRCMGIRTVLFVDEI---HRFNKAQQDAFLPFVEKGSIVL 137

Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
           + A T   S+ V    L SR     V  +   ++  L K++    
Sbjct: 138 IGATTENPSFEVNAA-LLSR---CRVFVLKALEETDLVKLLTNAL 178


>gi|254361649|ref|ZP_04977787.1| possible recombination ATPase [Mannheimia haemolytica PHL213]
 gi|261496364|ref|ZP_05992758.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153093167|gb|EDN74183.1| possible recombination ATPase [Mannheimia haemolytica PHL213]
 gi|261307949|gb|EEY09258.1| putative recombination ATPase [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 445

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 39/205 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLED--IDLLDFN 122
           +I  GP G+GK+ LA I +    +   R S +   +  I        ++E   ++     
Sbjct: 52  MIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIRE------VIEQAKLNRQAGR 105

Query: 123 DTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVV 168
            T LF    H  N   Q        D +++    T              L SR   A + 
Sbjct: 106 RTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---ARIY 159

Query: 169 KISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220
            +       + K++    AD  R      + ++  + A +   +     FA   ++ M D
Sbjct: 160 ILKPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMVD 219

Query: 221 NLALSRGMGI-TRSLAAEVLKETQQ 244
               S    +  +SL  EVL E Q 
Sbjct: 220 MAQDSAKGKVLNKSLLTEVLGERQA 244


>gi|114605200|ref|XP_001159547.1| PREDICTED: ATPase WRNIP1 isoform 2 [Pan troglodytes]
          Length = 614

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339


>gi|305665149|ref|YP_003861436.1| putative AAA family ATPase protein [Maribacter sp. HTCC2170]
 gi|88709901|gb|EAR02133.1| putative AAA family ATPase protein [Maribacter sp. HTCC2170]
          Length = 425

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 24/140 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +IL GP G+GK+ LANI +++S+                    + AK    +      
Sbjct: 40  PSIILWGPPGTGKTTLANIIANESQRPFYILSAINSGVKDIREVIDKAKQTGGLFTAKNP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L        +     L+ A T   S+ V +P L SR     V 
Sbjct: 100 ILFIDEIHRFSKSQQDSLL----GAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151

Query: 169 KISLPDDDFLEKVIVKMFAD 188
            ++    + LE ++ +    
Sbjct: 152 VLNPFGKEDLESLLSRALKQ 171


>gi|297791633|ref|XP_002863701.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata]
 gi|297309536|gb|EFH39960.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata]
          Length = 400

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E        
Sbjct: 172 PPKCVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 223

Query: 123 DTQLFHIINSIHQYD 137
                 + N   ++ 
Sbjct: 224 ------MFNYAREHQ 232


>gi|160894379|ref|ZP_02075156.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50]
 gi|156864080|gb|EDO57511.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50]
          Length = 605

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 50/200 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 260

Query: 111 VLLEDIDL--------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID         +  ND       QL   ++     +  +++ A   P S      
Sbjct: 261 VFIDEIDAIGKKRDGQIGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320

Query: 152 ---------GVCLPDLCSR--LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
                     V LPDL  R  +      KI + DD     +           +   +   
Sbjct: 321 RPGRFDRRVPVELPDLKGREAILQVHARKIKVSDDVNFHTIARMAAGASGAELANIVNEA 380

Query: 201 IVQRMERSLVFAEKLVDKMD 220
            +    R++     +V + D
Sbjct: 381 AL----RTVRAGRTIVTEAD 396


>gi|322371776|ref|ZP_08046319.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
           DX253]
 gi|320548661|gb|EFW90332.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
           DX253]
          Length = 405

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  ++   +
Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFEVARQH 241

Query: 123 DTQLF 127
           +  + 
Sbjct: 242 EPAVL 246


>gi|288930616|ref|YP_003434676.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642]
 gi|288892864|gb|ADC64401.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642]
          Length = 791

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 36/165 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + ++L GP G+GK+ LA   +++S +   S     L S  +   +             
Sbjct: 546 PPKGILLYGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQV 605

Query: 110 -PVLL--EDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            P +L  ++ID L                 +QL   ++ + +    +++ A   P     
Sbjct: 606 APCVLFFDEIDSLAPRRGTGGDTHVTERVVSQLLTELDGLEELKDVVVIAATNRPDMIDP 665

Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            L  L   RL+    + I  PD+    ++ +     R + +D+ +
Sbjct: 666 AL--LRPGRLE--RHIYIPPPDE--KARLEIFKIHTRGMPLDEDV 704



 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 61/162 (37%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ +A   +++  +                   + L  I  + R+ 
Sbjct: 212 PPKGVLLYGPPGTGKTLIAKAVANEVNAHFIPISGPEIMSKYYGESEQRLREIFEEAREN 271

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 272 APSIIFIDEIDSIAPKREEVTGEVERRVVAQLLTLMDGLEARGQVIVIGATNRPDAID-- 329

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    ++I +PD +  ++++      R + I+  
Sbjct: 330 -PALRRPGRFDREIEIGVPDREGRKEILQ--IHTRGMPIEPD 368


>gi|251773234|gb|EES53785.1| IstB domain protein ATP-binding protein [Leptospirillum
           ferrodiazotrophum]
          Length = 251

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 20/111 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +++ GP+G GK+ LA      +    FS +  SL+ +L                  +   
Sbjct: 103 ILIAGPTGVGKTHLACALGQAACRQGFSTLFFSLNRLLEKMALVRAQGRYLSLLKKLTAA 162

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLPD 157
             ++L+D  L      QL  I + +     SL  ++T +    +W   LPD
Sbjct: 163 SVIVLDDFGLRALTPPQLQDIYDLVDGRVESLSTIVTTQLPVENWREILPD 213


>gi|229591234|ref|YP_002873353.1| recombination factor protein RarA [Pseudomonas fluorescens SBW25]
 gi|229363100|emb|CAY50103.1| conserevd hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 440

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +   +  A       I     V  +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVAKQQA 99

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  ++K++ +   +      RQ+ + ++    ++   +       + +
Sbjct: 155 --ARVYVLKSLDEVAMQKLLHRALNEDKGLGKRQLSVSEEGFKILLTAAD---GDGRRFL 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L +T++
Sbjct: 210 NLLENASDLAEDGGEIGVDLLQSLLGDTRR 239


>gi|255071147|ref|XP_002507655.1| predicted protein [Micromonas sp. RCC299]
 gi|226522930|gb|ACO68913.1| predicted protein [Micromonas sp. RCC299]
          Length = 427

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 203 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARLVRELFQMARSK 261

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 262 KACLIFFDEVDAIGGARFDDGQGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 321

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 322 DPALLRPGRLDRKVEFGLPDLESR 345


>gi|84998430|ref|XP_953936.1| 26S proteasome subunit 4 [Theileria annulata]
 gi|65304934|emb|CAI73259.1| 26S proteasome subunit 4, putative [Theileria annulata]
          Length = 438

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 44/202 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGEGPKLVREMFKVAEDN 275

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146
                 +++ID +                  +  ++N +     Q D  ++M        
Sbjct: 276 APSIIFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSQSDVKVIMATNKIESL 335

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          +++  PD     K+     +   +  D  L  ++V + +
Sbjct: 336 DPALIRPGRIDRK--------IQLPNPDSKTKRKIFEIHTSKMTMSKDVDLDEFVVNKDD 387

Query: 207 RSLVFAEKLVDKMDNLALSRGM 228
            S    + +  +   LAL    
Sbjct: 388 LSGADIKAMCTEAGLLALRERR 409


>gi|15897214|ref|NP_341819.1| proteasome-activating nucleotidase [Sulfolobus solfataricus P2]
 gi|284174460|ref|ZP_06388429.1| proteasome-activating nucleotidase [Sulfolobus solfataricus 98/2]
 gi|20532213|sp|Q980M1|PAN_SULSO RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|13813411|gb|AAK40609.1| AAA family ATPase [Sulfolobus solfataricus P2]
 gi|261601882|gb|ACX91485.1| 26S proteasome subunit P45 family [Sulfolobus solfataricus 98/2]
          Length = 393

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +S +     +A       +     ++ E
Sbjct: 167 PPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRE 218


>gi|71747092|ref|XP_822601.1| protease regulatory ATPase subunit 4 [Trypanosoma brucei TREU927]
 gi|70832269|gb|EAN77773.1| protease regulatory ATPase subunit 4 [Trypanosoma brucei]
          Length = 399

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 39/158 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     +A S+    I     VL          
Sbjct: 176 PPKGVLLYGPPGTGKTLLAKAIASNVDAAFLKIVASSIVDKYIGESARVLREMFAFARDH 235

Query: 113 ------LEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWG 152
                 ++++D +                   +L H ++   +     ++ A   P +  
Sbjct: 236 EPCIIFIDEVDAIGGKRIEGSSSDREVQRTLMELLHQMDGFEKLGKVKVIMATNRPDTLD 295

Query: 153 VCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFA 187
             L      ++   +   ++I LP++     V+    +
Sbjct: 296 PAL------MRPGRLDRKIEIGLPNEAGRLDVLKIHAS 327


>gi|71033449|ref|XP_766366.1| 26S proteasome regulatory subunit 4 [Theileria parva strain Muguga]
 gi|68353323|gb|EAN34083.1| 26S proteasome regulatory subunit 4, putative [Theileria parva]
          Length = 415

 Score = 42.8 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 44/202 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 193 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGEGPKLVREMFKVAEDN 252

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146
                 +++ID +                  +  ++N +     Q D  ++M        
Sbjct: 253 APSIIFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSQSDVKVIMATNKIESL 312

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          +++  PD     K+     +   +  D  L  ++V + +
Sbjct: 313 DPALIRPGRIDRK--------IQLPNPDSKTKRKIFEIHTSKMTMSKDVDLDEFVVNKDD 364

Query: 207 RSLVFAEKLVDKMDNLALSRGM 228
            S    + +  +   LAL    
Sbjct: 365 LSGADIKAMCTEAGLLALRERR 386


>gi|148910747|gb|ABR18440.1| unknown [Picea sitchensis]
          Length = 721

 Score = 42.8 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 28/148 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121
             ++  GP G+GK+ LA   ++    R +  S +   L  +        +LE+   +   
Sbjct: 242 PSIVFWGPPGTGKTTLARAIANSVSYRFSSVSAVTSGLKEVRE------VLEEAKRMKKM 295

Query: 122 NDTQLF-----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
               LF     H  N           +  S + + A T   S+ V    L SR +  T+ 
Sbjct: 296 GQRTLFFVDEVHRFNKAQQDAFLPVVEDGSIVFIGATTENPSFEVNNA-LLSRCRVLTLN 354

Query: 169 KISLPDDDFLEKVIVKMF--ADRQIFID 194
           K+     + + K++ +    +D+ + + 
Sbjct: 355 KLQP---EHIRKLLERAVSDSDKGLMVS 379


>gi|327314193|ref|YP_004329630.1| recombination factor protein RarA [Prevotella denticola F0289]
 gi|326944810|gb|AEA20695.1| recombination factor protein RarA [Prevotella denticola F0289]
          Length = 406

 Score = 42.8 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 73/193 (37%), Gaps = 25/193 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVL- 112
            IL GP G GK+ LA I + +  +  +               I ++ +    ++  P+L 
Sbjct: 41  FILWGPPGVGKTTLAQIIAHRLETPFYTLSAVTSGVKDVRDVIERAQNGRFFNSASPILF 100

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +  +  L+ A T   S+ V  P L SR +   +  + 
Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEKGTVTLIGATTENPSFEVIRP-LLSRCQLYVLKSLE 155

Query: 172 LPDDDFLEKVIVKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
              DD L  +   +  D ++    ID      +++           +++ + + A    +
Sbjct: 156 K--DDLLTLLHRAVAEDTELKKRHIDLHETDALLRYSGGDARKLLNILELIVDAAPDGTV 213

Query: 229 GITRSLAAEVLKE 241
            +T  +  E L++
Sbjct: 214 TVTDRIVEERLQQ 226


>gi|315498196|ref|YP_004087000.1| aaa atpase central domain protein [Asticcacaulis excentricus CB 48]
 gi|315416208|gb|ADU12849.1| AAA ATPase central domain protein [Asticcacaulis excentricus CB 48]
          Length = 451

 Score = 42.8 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 22/134 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ +A + +       F  I+     +  D +K              +
Sbjct: 66  PSLILWGPPGVGKTTIARLLAASVG-YEFQQISAVFSGVA-DLKKAFEYAQARRTQGVRS 123

Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N           +     L+  T              L SR     V  +
Sbjct: 124 VLFVDEIHRFNRAQQDSFLPYVEAGVVTLIGATTENPSFELNGA---LLSR---CQVFVL 177

Query: 171 SLPDDDFLEKVIVK 184
              DD+ ++++I +
Sbjct: 178 KRLDDEAMDRLIAR 191


>gi|313899860|ref|ZP_07833363.1| recombination factor protein RarA [Clostridium sp. HGF2]
 gi|312955475|gb|EFR37140.1| recombination factor protein RarA [Clostridium sp. HGF2]
          Length = 421

 Score = 42.8 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 75/187 (40%), Gaps = 28/187 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +I  GP G+GK+ LA + +++           +   K L++I  +        V+++++ 
Sbjct: 42  MIFYGPPGTGKTTLAMVLANELELPFRMFNAVTGNKKDLETIFQEAKFYEGLIVIIDEVH 101

Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L+ +   L   H+ N       ++ +   T         P + SR     + +I     
Sbjct: 102 RLNKDKQDLLLPHVEN------GNITLIGATTSNPLHAINPAIRSR---CHLFEIKQAQQ 152

Query: 176 DFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           + +E+ ++K        +  + I+++    I +    S       ++ ++  AL+    I
Sbjct: 153 EDIEQALMKAIHHQDGLNDSVQIEEEALHIIARH---SNGDIRYSLNILEICALASDGVI 209

Query: 231 TRSLAAE 237
           T+ L ++
Sbjct: 210 TQELVSQ 216


>gi|265756256|ref|ZP_06090585.1| TnpB protein [Bacteroides sp. 3_1_33FAA]
 gi|263233847|gb|EEZ19456.1| TnpB protein [Bacteroides sp. 3_1_33FAA]
          Length = 236

 Score = 42.8 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GPSG+GK+ LA      +    +     +++ I+                  I   
Sbjct: 103 LILIGPSGTGKTFLAAGLVFDAVKADYKAYLMTMEDIVNCLRLKDISTSAMMTYNKILRA 162

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + + ++DI L        T  F++IN++H+  +S+++T    P      L D
Sbjct: 163 QLLAIDDIMLFPVKRKEATAFFNLINTLHE-KTSIIITTNKAPTECVETLND 213


>gi|239782080|pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
           Nucleotidase
 gi|239782081|pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
           Nucleotidase
 gi|239782082|pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
           Nucleotidase
          Length = 285

 Score = 42.8 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ LA   + ++ +T    +   L    I     ++ +
Sbjct: 50  PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKD 101


>gi|254573148|ref|XP_002493683.1| Mitochondrial protein involved in sorting of proteins in the
           mitochondria [Pichia pastoris GS115]
 gi|238033482|emb|CAY71504.1| Mitochondrial protein involved in sorting of proteins in the
           mitochondria [Pichia pastoris GS115]
 gi|328354491|emb|CCA40888.1| Protein MSP1 [Pichia pastoris CBS 7435]
          Length = 358

 Score = 42.8 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 40/137 (29%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP---- 110
           V+L GP G GK+ LA   + +S +   S               K +D+I     K     
Sbjct: 128 VLLYGPPGCGKTMLAKALASESGANFISIRMSSVMDKWYGESNKLVDAIFSLANKLQPCI 187

Query: 111 VLLEDIDLLDFNDTQLFH------------IINSIHQYDSSLLMTA------------RT 146
           + +++ID        + H            + + +      L++ A            R 
Sbjct: 188 IFIDEIDSFLRERQAMDHEITATLKAEFMTLWDGLTSTGRILVLGATNRPNDIDSAFMRR 247

Query: 147 FPVSWGVCLPDLCSRLK 163
            P  + V LPD   R K
Sbjct: 248 MPKRFSVNLPDTEQRFK 264


>gi|313127103|ref|YP_004037373.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
           11551]
 gi|312293468|gb|ADQ67928.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM
           11551]
          Length = 405

 Score = 42.8 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ ++        L    I     ++ +  ++   N
Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 241

Query: 123 DTQL 126
           +  +
Sbjct: 242 EPAV 245


>gi|237843905|ref|XP_002371250.1| AAA family ATPase domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211968914|gb|EEB04110.1| AAA family ATPase domain-containing protein [Toxoplasma gondii
           ME49]
 gi|221483797|gb|EEE22109.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 791

 Score = 42.8 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+R ++L GP GSGKS +A I + ++ +  + 
Sbjct: 512 PARSLLLYGPPGSGKSLVARIIATEAGAMFYD 543


>gi|126724895|ref|ZP_01740738.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2150]
 gi|126706059|gb|EBA05149.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2150]
          Length = 438

 Score = 42.8 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 33/186 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ +A + +D       + S I   +  +    +       I   +   T
Sbjct: 58  LIFWGPPGVGKTTIARLLADHVDLAFVQISAIFSGVADLKKVFQAAT----IRHQNGQGT 113

Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q          ++L+   T              L SR +   + ++
Sbjct: 114 LLFVDEIHRFNKAQQDGFLPYMENGTILLVGATTENPSFELNAA---LLSRSQVLVLERL 170

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLV------DKMDN 221
           SL D +FL +   K+  ++++ +       +++  +   R+L+   + V        +D 
Sbjct: 171 SLIDLEFLAQRAEKLL-EKKLPLTNDSRDALLEMADGDGRTLLNLIEQVSAWKLNASLDR 229

Query: 222 LALSRG 227
            AL++ 
Sbjct: 230 DALAKR 235


>gi|108758871|ref|YP_630990.1| AAA family ATPase [Myxococcus xanthus DK 1622]
 gi|108462751|gb|ABF87936.1| ATPase, AAA family [Myxococcus xanthus DK 1622]
          Length = 711

 Score = 42.8 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 33/159 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTRKP 110
           V+L GP G GK+ +A   + ++ +  F                +++ +  D         
Sbjct: 223 VLLYGPPGCGKTLIARAVAHETAAAFFTITGPEIMHKFYGESEAHLRQIFDEAQRRAPAI 282

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           + +++ID +                 QL  +++ + Q    +++ A   P    V  P L
Sbjct: 283 IFVDEIDAIAPRRENVQGEVEKRVVAQLLSLMDGLAQRRHVIVLAATNIP---NVLDPAL 339

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               +    + IS+PD    ++++      R + + + +
Sbjct: 340 RRPGRFDREIAISIPDRTARKEIL--AIHSRGMPLAEDV 376


>gi|325262409|ref|ZP_08129146.1| ATPase, AAA family [Clostridium sp. D5]
 gi|324032241|gb|EGB93519.1| ATPase, AAA family [Clostridium sp. D5]
          Length = 439

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 25/149 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPV 111
           +LI+         +I  GP G GK+ LA+I + ++++    FS +   +  I     +  
Sbjct: 46  QLIERDQ---ISSMIFWGPPGVGKTTLASIIAGQTKADFINFSAVTSGIKEIKEVMNQA- 101

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLC 159
             E    +    T LF    H  N           +  S +L+ A T   S+ V    L 
Sbjct: 102 --EQSRRMGIR-TVLFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEVNAA-LL 157

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           SR     V  +   ++  L K++    A+
Sbjct: 158 SR---CRVFVLKALEEKDLVKLLSHALAN 183


>gi|261253433|ref|ZP_05946006.1| ATPase AAA family [Vibrio orientalis CIP 102891]
 gi|260936824|gb|EEX92813.1| ATPase AAA family [Vibrio orientalis CIP 102891]
          Length = 428

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 34  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIERAREN--KLAGRRTIL 91

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 92  FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 145

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
                +   + +   D  R +        + +   +        RM  + +     + + 
Sbjct: 146 LAQQDIRLALKQAIEDKERGLGNVEASFAEGVLDRLSELVNGDARMSLNYLELLYDMAEE 205

Query: 220 DNLALSRGMGITRSLAAEV 238
           D         IT  L AEV
Sbjct: 206 DE---QGVKVITLPLLAEV 221


>gi|302530751|ref|ZP_07283093.1| predicted protein [Streptomyces sp. AA4]
 gi|302439646|gb|EFL11462.1| predicted protein [Streptomyces sp. AA4]
          Length = 219

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 28/156 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLE 114
           R ++L GP G+GK+        +            + RF + A SL   L  +   V+LE
Sbjct: 3   RGLLLHGPPGTGKTHTVRYLMGQLPNCTVVILTGVAMRFISQAASLARRLQPSV--VVLE 60

Query: 115 DIDLLDFNDT-------QLFHIINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           D+DL+  +          LF +++++       D + L+T      S    L D   R+ 
Sbjct: 61  DVDLIAEDRALAHGPTPLLFSLLDAMDGVGGDADVTFLLTTNRA-SSLEKALADRPGRVD 119

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
               V++ LPD    E ++      R + +   L  
Sbjct: 120 --LAVEVPLPDAAGREALL--RLYSRDLELTADLTP 151


>gi|256078588|ref|XP_002575577.1| 26S protease regulatory subunit 6a [Schistosoma mansoni]
 gi|238660818|emb|CAZ31810.1| 26S protease regulatory subunit 6a, putative [Schistosoma mansoni]
          Length = 428

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|193787734|dbj|BAG52937.1| unnamed protein product [Homo sapiens]
          Length = 614

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339


>gi|81362459|gb|ABB71589.1| 26S proteasome subunit ATPase 3 [Schistosoma mansoni]
          Length = 407

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 187 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 238


>gi|149054560|gb|EDM06377.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_f
           [Rattus norvegicus]
          Length = 240

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
             P + V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 14  DGPEQGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 67


>gi|48101907|ref|XP_392722.1| PREDICTED: 26S protease regulatory subunit 6A [Apis mellifera]
          Length = 428

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|195118724|ref|XP_002003886.1| GI18150 [Drosophila mojavensis]
 gi|193914461|gb|EDW13328.1| GI18150 [Drosophila mojavensis]
          Length = 356

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T+R  P           SR      +++  P +  +  V+        + +  +LA  +V
Sbjct: 168 TSRIIPAI--------RSR---CLGIRVPAPSEAEMIAVLQNTCKREGLVLPPELAKRVV 216

Query: 203 QRMERSLVFAEKLVDK 218
           ++ ER++  A  +++ 
Sbjct: 217 EKSERNMRRALLMLEA 232


>gi|154148052|ref|YP_001406390.1| recombination factor protein RarA [Campylobacter hominis ATCC
           BAA-381]
 gi|153804061|gb|ABS51068.1| ATPase, AAA family [Campylobacter hominis ATCC BAA-381]
          Length = 392

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT----------RKPVLLEDID 117
           I  GP+GSGK+ LA + +++   T +   A +L    I            +  + +++I 
Sbjct: 38  IFFGPAGSGKTTLAKVLANELNYTFYELDASNLKVEDIRKILNMHENSLYKPLIFIDEIH 97

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            L  N  ++  I     +   ++++ A T    + V    + SR       +     +  
Sbjct: 98  RLSKNQQEILLI---PLENQKAVIIGATTENPQF-VLTSGIRSR---CMFFEFKALTNAD 150

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
           L ++  K+       IDK+   Y+   +  S   A  + + +D   L
Sbjct: 151 LCELFEKVQKSLNFTIDKEAKNYL---ISSSGGDARAMFNLLDFALL 194


>gi|145341718|ref|XP_001415951.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576174|gb|ABO94243.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 429

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 205 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARLVRELFQMARSK 263

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 264 KACLIFFDEVDAIGGARFDDGQGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 323

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 324 DPALLRPGRLDRKVEFGLPDLESR 347


>gi|157962052|ref|YP_001502086.1| recombination factor protein RarA [Shewanella pealeana ATCC 700345]
 gi|157847052|gb|ABV87551.1| AAA ATPase central domain protein [Shewanella pealeana ATCC 700345]
          Length = 443

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 29/193 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++  GP G+GK+ LA + +  + +   R S +   +  I          +++       T
Sbjct: 52  MMFWGPPGTGKTTLAELVARYANAHVERISAVTSGVKEIRSAIEHA---KNVAQSRGQRT 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + + + A T   S+ +    L SR   A V  I  
Sbjct: 109 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYVIKQ 164

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            + D + +++ +   D       R+  +   +A  + Q  +     A  L++ M ++ L 
Sbjct: 165 LEADEIGQIVQQALKDEERGLGKRKFLLPPDVALKLAQTCDGDARKALNLIELMSDM-LK 223

Query: 226 RGMGITRSLAAEV 238
            G   T  +  +V
Sbjct: 224 DGEAFTEEMIVQV 236


>gi|331220862|ref|XP_003323106.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309302096|gb|EFP78687.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 830

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 42/141 (29%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------- 109
           R V+L GP G+GK+ LA   + ++    F       D + +                   
Sbjct: 416 RGVLLTGPPGTGKTLLARAVAGEAGVQFFIASGSEFDEMYVGVGARRIRELFAAARKAAP 475

Query: 110 -PVLLEDIDLLDF-----NDTQLFHIINS-------IHQYDSSLLMTARTFPVSWG---- 152
             + ++++D +       +   +   +N          Q +  +LM A  FP S      
Sbjct: 476 AIIFIDELDAIGGKRSPKDQHYMKQTLNQLLVELDGFQQSEGVILMAATNFPASLDKALT 535

Query: 153 ----------VCLPDLCSRLK 163
                     V LPD   R++
Sbjct: 536 RPGRFDRHVAVPLPDARGRIQ 556


>gi|257784257|ref|YP_003179474.1| AAA ATPase central domain-containing protein [Atopobium parvulum
           DSM 20469]
 gi|257472764|gb|ACV50883.1| AAA ATPase central domain protein [Atopobium parvulum DSM 20469]
          Length = 443

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 23/136 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVL- 112
           V+L GP+G+GK+ LA I +  + +                  I  +   +L   R+ +L 
Sbjct: 56  VLLYGPAGTGKTTLARIIAHTTHAEFVEVSAITGTVKDLRREIEAAESRLLTAGRRTILF 115

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I          L H      +    +L+ A T    + V    L SR   + VV++ 
Sbjct: 116 IDEIHRFTRSQQDALLH----AVEDRIVVLIGATTENPYFEVNSA-LISR---SRVVELH 167

Query: 172 LPDDDFLEKVIVKMFA 187
              D+ ++++I +   
Sbjct: 168 ALSDNAIDELIQRALE 183


>gi|269860426|ref|XP_002649934.1| 19S/PA700 proteasome regulatory particle subunit Rpt1p/S7
           [Enterocytozoon bieneusi H348]
 gi|220066621|gb|EED44096.1| 19S/PA700 proteasome regulatory particle subunit Rpt1p/S7
           [Enterocytozoon bieneusi H348]
          Length = 417

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 14/72 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G+GK+ LA   ++++ +     I   L    +     ++ E        
Sbjct: 194 PPKGVLLYGPPGTGKTLLARAVANRTNACFIRVIGSELIQKYVGEGARMIRE-------- 245

Query: 123 DTQLFHIINSIH 134
                 I N   
Sbjct: 246 ------IFNLAR 251


>gi|251798346|ref|YP_003013077.1| ATPase AAA [Paenibacillus sp. JDR-2]
 gi|247545972|gb|ACT02991.1| AAA ATPase central domain protein [Paenibacillus sp. JDR-2]
          Length = 436

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 49/208 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---- 122
           ++L GP G GK+ LANI S ++        A       +D     + E ID    N    
Sbjct: 54  ILLYGPPGCGKTTLANIISKRTAGEFVKLNA-------VDASVKDVREVIDTAKTNKLMY 106

Query: 123 --DTQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
              T LF    H  N+  Q           ++    T    +      L SR   +T+ +
Sbjct: 107 GKKTILFLDEVHRFNTSRQDALLPAVEQGIIIFIGATTENPFHHVNGALLSR---STLFQ 163

Query: 170 ISLPD-----DDFLEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +   +     +     +  K   DR      +  +++   +I            + ++ +
Sbjct: 164 LEPLNEKHALEAMKRALTDK---DRGLGFMTLHAEEEALQHIAAMAG---GDIRRALNAL 217

Query: 220 DNLALSRGM------GITRSLAAEVLKE 241
           +  A++          IT  +A E +++
Sbjct: 218 ELAAVTTPSEPDGSVRITMEVAQESIRK 245


>gi|166368947|ref|YP_001661220.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166091320|dbj|BAG06028.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 625

 Score = 42.8 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 59/220 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++  + FS        + +                     
Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEAGVSFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCI 264

Query: 111 VLLEDIDLL----------DFNDT------QLFHIINSIHQYDSSL-LMTARTFPVSWGV 153
           + ++++D +            ND       QL   ++  +  D+++ ++ A   P +   
Sbjct: 265 IFIDELDAIGKSRANGNFMGGNDEREQTLNQLLTEMDGFNAGDATVIVLAATNRPETLDT 324

Query: 154 CL--------------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR-----QIFID 194
            L              PDL  RLK   +++I          V +K  A R        + 
Sbjct: 325 ALLRPGRFDRQVLVDRPDLAGRLK---ILEIYAGKVKLGSGVDLKQIATRTPGFAGADLA 381

Query: 195 KKL--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230
             +  AA +  R +RS V  E   + ++     L +   +
Sbjct: 382 NLVNEAALLAARNQRSTVAQEDFNEAIERVVAGLEKKSRV 421


>gi|327393324|dbj|BAK10746.1| ATPase AAA family YcaJ [Pantoea ananatis AJ13355]
          Length = 455

 Score = 42.8 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I +    +   R S +   +  I     +      +       T
Sbjct: 61  MILWGPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERA----RLSKQAGRRT 116

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 117 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 170

Query: 171 SLPDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRM---------ERSLVFAEKLVDKM 219
                + +E+V+ +    ADR       L     +RM          R+L   E + D  
Sbjct: 171 KSLTTEDIEQVLDQAMQDADRGYGNSDILLPNNTRRMIAELVSGDARRALNTLEMMADMA 230

Query: 220 DNLALSRGMGITRSLAAEV 238
           +  A      +T  L  EV
Sbjct: 231 ETNA-QGKRELTPQLLTEV 248


>gi|312376781|gb|EFR23773.1| hypothetical protein AND_12269 [Anopheles darlingi]
          Length = 276

 Score = 42.8 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 45  PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 96


>gi|308162288|gb|EFO64695.1| AAA family ATPase [Giardia lamblia P15]
          Length = 870

 Score = 42.8 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PSR  +L GP G+GKS LA   +++      S
Sbjct: 539 PSRGALLWGPPGTGKSLLAKAIANECGCNYIS 570



 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 46/177 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G GK+ +    ++++ +  F                 N+ K+ D    +
Sbjct: 252 PPRGILLTGPPGCGKTTIGKAIANEAGAYFFLLNGAEIMSSMAGESEKNLRKAFDICEQE 311

Query: 107 TRKP-----------VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMT 143
             K            + +++ID +  N              QL  +++ I    + +++ 
Sbjct: 312 AEKSAKENDGVGCAILFIDEIDCIAGNRAESKGEVEKRVVSQLLTLMDGIKPRSNVIVLA 371

Query: 144 ARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           A   P    V  P L  R  +    ++I++PD++   +++      R++ +      
Sbjct: 372 ATNRP---NVIDPALR-RFGRFDREIQINVPDENGRLEIL--SIHTRKLKLHPDGVD 422


>gi|269468528|gb|EEZ80182.1| Holliday junction resolvasome, helicase subunit [uncultured SUP05
           cluster bacterium]
          Length = 341

 Score = 42.8 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
           ++ GP G GK+ LA++ + +  +         L+           LE  D+L  ++    
Sbjct: 59  LIYGPPGLGKTTLAHVIAHQMGAGLKQTAGPVLERSGDLAAILTKLEPYDILFIDEI--- 115

Query: 128 HIINSIHQY 136
           H +N + + 
Sbjct: 116 HRLNPVVEE 124


>gi|266621439|ref|ZP_06114374.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
 gi|288866879|gb|EFC99177.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
          Length = 444

 Score = 42.8 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 28/174 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122
             VI  GP G+GK+ LA + ++ + +      A       ++    ++ E  D L     
Sbjct: 53  GSVIFYGPPGTGKTTLAKVIANTTSADFKQINATVAGKKDMEE---IVKEARDSLGMFGR 109

Query: 123 DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  +  L+ A T    + V    L SR   + V ++
Sbjct: 110 KTILFVDEIHRFNKGQQDYLLPFVEDGTLTLIGATTENPYFEVNGA-LLSR---SRVFEL 165

Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVD 217
              + + + ++I +   DR          ID++   ++          A   V+
Sbjct: 166 KPLEREDIRELIRRAVYDRDKGMGAYNAVIDEEAMNFLADVANGDARAALNAVE 219


>gi|253742222|gb|EES99067.1| AAA family ATPase [Giardia intestinalis ATCC 50581]
          Length = 870

 Score = 42.8 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PSR  +L GP G+GKS LA   +++      S
Sbjct: 539 PSRGALLWGPPGTGKSLLAKAIANECGCNYIS 570



 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 46/177 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G GK+ +    ++++ +  F                 N+ K+ D    +
Sbjct: 252 PPRGILLTGPPGCGKTTIGKAIANEAGAYFFLLNGAEIMSSMAGESEKNLRKAFDICEQE 311

Query: 107 TRKP-----------VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMT 143
             K            + +++ID +  N              QL  +++ I    + +++ 
Sbjct: 312 AEKSAKENDGVGCAILFIDEIDCIAGNRAESKGEVEKRVVSQLLTLMDGIKPRSNVIVLA 371

Query: 144 ARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           A   P    V  P L  R  +    ++I++PD++   +++      R++ +      
Sbjct: 372 ATNRP---NVIDPALR-RFGRFDREIQINVPDENGRLEIL--SIHTRKLKLHPDGVD 422


>gi|225681655|gb|EEH19939.1| 26S protease regulatory subunit 6A [Paracoccidioides brasiliensis
           Pb03]
          Length = 428

 Score = 42.8 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 214 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 273

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 274 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 331

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 332 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 367


>gi|159108838|ref|XP_001704687.1| AAA family ATPase [Giardia lamblia ATCC 50803]
 gi|157432757|gb|EDO77013.1| AAA family ATPase [Giardia lamblia ATCC 50803]
          Length = 870

 Score = 42.8 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PSR  +L GP G+GKS LA   +++      S
Sbjct: 539 PSRGALLWGPPGTGKSLLAKAIANECGCNYIS 570



 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 46/177 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G GK+ +    ++++ +  F                 N+ K+ D    +
Sbjct: 252 PPRGILLTGPPGCGKTTIGKAIANEAGAYFFLLNGAEIMSSMAGESEKNLRKAFDICEQE 311

Query: 107 TRKP-----------VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMT 143
             K            + +++ID +  N              QL  +++ I    + +++ 
Sbjct: 312 AEKSAKENDGVGCAILFIDEIDCIAGNRAESKGEVEKRVVSQLLTLMDGIKPRSNVIVLA 371

Query: 144 ARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           A   P    V  P L  R  +    ++I++PD++   +++      R++ +      
Sbjct: 372 ATNRP---NVIDPALR-RFGRFDREIQINVPDENGRLEIL--SIHTRKLKLHPDGVD 422


>gi|323486280|ref|ZP_08091606.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum
           WAL-14163]
 gi|323693929|ref|ZP_08108116.1| replication-associated recombination protein A [Clostridium
           symbiosum WAL-14673]
 gi|323400390|gb|EGA92762.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum
           WAL-14163]
 gi|323502026|gb|EGB17901.1| replication-associated recombination protein A [Clostridium
           symbiosum WAL-14673]
          Length = 440

 Score = 42.4 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 28/174 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122
             +I  GP G+GK+ LA + +  + + RF  +  ++        + V+ E  D L     
Sbjct: 53  GSIIFYGPPGTGKTTLAKVIAGTTSA-RFKQLNATVAGK--KDMEEVVQEAKDALGMYGQ 109

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  + LL+ A T    + V    L SR   + + ++
Sbjct: 110 KTILFVDEIHRFNKSQQDYLLPFVEDGTLLLIGATTENPYFEVNGA-LISR---SRIFEL 165

Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVD 217
                + + +++ +   D+       +  I ++   ++          A   V+
Sbjct: 166 KPLAKEDVAELLRRAVYDKEKGMGSYKADISEEAVDFLADMAGGDARAALNAVE 219


>gi|319405871|emb|CBI79503.1| ATPase, AAA family [Bartonella sp. AR 15-3]
          Length = 439

 Score = 42.4 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 68/182 (37%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + + ++     + S I   +  +    +K   +    
Sbjct: 50  ASGSFSSMIFWGPPGTGKTTIARLLALETNFAFEQVSAIFTGISEL----KKIFEVARAR 105

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
           L+    T LF    H  N           +  + +L+  T              L SR++
Sbjct: 106 LMSGCQTLLFIDEIHRFNRAQQDSFLSFMEDGTIILVGATTENPSFELNAA---LLSRVR 162

Query: 164 AATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
              ++     D++ LE ++ +      R + +D +    +++  +     A  L +++  
Sbjct: 163 ---ILTFHTHDNESLEILLKRAEKMEGRALPLDDQAREILIRMSDGDARAALTLAEEIWR 219

Query: 222 LA 223
           +A
Sbjct: 220 VA 221


>gi|295659984|ref|XP_002790549.1| vacuolar protein sorting-associated protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226281424|gb|EEH36990.1| vacuolar protein sorting-associated protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 433

 Score = 42.4 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 163 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 213 -KQLF---NMARENRPAIIF 228


>gi|255283517|ref|ZP_05348072.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
 gi|255265974|gb|EET59179.1| replication-associated recombination protein A [Bryantella
           formatexigens DSM 14469]
          Length = 468

 Score = 42.4 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 20/144 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +I  GP G GK+ LA I +  +++   +              + ++ +S  +  R  + +
Sbjct: 75  MIFWGPPGVGKTTLAGIIAAHTKAEFINFSAVTSGIKEIKEVMQQAENSRRMGRRTVLFV 134

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ V    L SR     V  +   
Sbjct: 135 DEIHRFNKAQQDAFLPF---VEKGSIILIGATTENPSFEVNAA-LLSR---CRVFVLKAL 187

Query: 174 DDDFLEKVIVKMFADRQIFIDKKL 197
           ++  L +V+         F+   +
Sbjct: 188 EEKDLVRVLENALTSPSGFLHSHV 211


>gi|114605198|ref|XP_518204.2| PREDICTED: Werner helicase interacting protein isoform 4 [Pan
           troglodytes]
          Length = 576

 Score = 42.4 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I +  S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339


>gi|308512763|gb|ADO33035.1| proteasome 26S subunit 6A [Biston betularia]
          Length = 428

 Score = 42.4 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|224137776|ref|XP_002326437.1| predicted protein [Populus trichocarpa]
 gi|222833759|gb|EEE72236.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score = 42.4 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 49/154 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 204 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 262

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  ++ID +                  +  I+N +  +D+     +LM        
Sbjct: 263 KACIVFFDEIDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 322

Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKIS 171
            P               LPDL SR   A + KI 
Sbjct: 323 DPALLRPGRLDRKVEFGLPDLESR---AQIFKIH 353


>gi|110669001|ref|YP_658812.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
           16790]
 gi|109626748|emb|CAJ53215.1| proteasome-activating nucleotidase 1 [Haloquadratum walsbyi DSM
           16790]
          Length = 410

 Score = 42.4 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  DL    
Sbjct: 185 PPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLFDLAAER 244

Query: 123 DTQL 126
           +  +
Sbjct: 245 EPAV 248


>gi|296109413|ref|YP_003616362.1| 26S proteasome subunit P45 family [Methanocaldococcus infernus ME]
 gi|295434227|gb|ADG13398.1| 26S proteasome subunit P45 family [Methanocaldococcus infernus ME]
          Length = 421

 Score = 42.4 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++ +T    +   L    I     ++ +
Sbjct: 196 PPKGVLLYGPPGTGKTLLAKAVARETNATFIRVVGSELVKKFIGEGASLVKD 247


>gi|14349164|dbj|BAB60708.1| Werner helicase interacting protein [Mus musculus]
          Length = 660

 Score = 42.4 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQD 334


>gi|161898988|ref|YP_201181.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|162319801|ref|YP_451430.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188576725|ref|YP_001913654.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576916|ref|YP_001913845.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521177|gb|ACD59122.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521368|gb|ACD59313.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 458

 Score = 42.4 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +  + +  F+ I+  L    +   + VL E           +
Sbjct: 62  MILWGPPGCGKTTLALLLAHYADAE-FNAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 118

Query: 127 F-----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
                 H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 175

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     A+R +      + +     I    +  +  A  L++    LA 
Sbjct: 176 PQDIVEALQRAL---HDAERGLGQQTIQVSEASLLEIASAADGDVRRALTLLEIAAELAT 232

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 233 GEGGEITPRTLLQVLADRTR 252


>gi|92116765|ref|YP_576494.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
 gi|91799659|gb|ABE62034.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
          Length = 287

 Score = 42.4 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R  +LVG +G+GK+ LA   +        + R     ++   L+    + R+  + E +
Sbjct: 98  QRNAVLVGGAGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRIAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 206


>gi|323139555|ref|ZP_08074600.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322395174|gb|EFX97730.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 662

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 74/213 (34%), Gaps = 43/213 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS        + +                   
Sbjct: 193 RGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAP 252

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +            D  +  L  +   ++     +  +L+ A   P     
Sbjct: 253 CIIFVDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 312

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      ++       +++  PD    EK++      R++ +   +   +V R      
Sbjct: 313 AL------MRPGRFDRQIQVPNPDFIGREKILKVHA--RKVPLAPDVDLKVVARGTPGFS 364

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            A  L++ ++  AL       R +  +  ++ +
Sbjct: 365 GA-DLMNLVNEAALLAARRSKRIVTNQEFEDAR 396


>gi|226469024|emb|CAX69991.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Schistosoma
           japonicum]
          Length = 428

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 69/184 (37%), Gaps = 40/184 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID---------------- 106
           P + V+L GP G+GK+ LA   + +++ST        L  + I                 
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLFRDAFQLAKEK 267

Query: 107 TRKPVLLEDIDLL---------DFN---DTQLFHIINSIH--QYDSSLLMTARTFPVSWG 152
               + ++++D +           +      +  ++N +   Q +  + + A T      
Sbjct: 268 APAIIFIDELDAIGTKRFNSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAAT--NRVD 325

Query: 153 VCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209
           +  P L   L++  V   ++   P+++   +++      R++ +DK +    + R     
Sbjct: 326 ILDPAL---LRSGRVDRKIEFPAPNEEARARIMQ--IHSRKMNVDKDVNFEELARCTDDF 380

Query: 210 VFAE 213
             A+
Sbjct: 381 NGAQ 384


>gi|119719589|ref|YP_920084.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk
           5]
 gi|119524709|gb|ABL78081.1| AAA family ATPase, CDC48 subfamily [Thermofilum pendens Hrk 5]
          Length = 718

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 43/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+  GP G+GK+ LA   ++++ +   +                 + +  +    +
Sbjct: 213 PPKGVLFYGPPGTGKTLLAKAVANETGAYFIAINGPEIMSKFYGESEQRLREIFEEATKN 272

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P      
Sbjct: 273 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLALMDGLKERGQVIVIAATNRPDDIDPA 332

Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L      D   R  A  V     PD     +++      R + + + +
Sbjct: 333 LRRPGRFD---REIAFPV-----PDKRARREILQVH--TRNMPLAEDV 370



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P + ++L GP G+GK+ LA   + +S +   
Sbjct: 486 PPKGILLYGPPGTGKTLLAKAVATESEANFI 516


>gi|150019877|ref|YP_001312131.1| DNA replication protein DnaC [Clostridium beijerinckii NCIMB 8052]
 gi|149906342|gb|ABR37175.1| DNA replication protein DnaC, putative [Clostridium beijerinckii
           NCIMB 8052]
          Length = 326

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 21/117 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----------------LIDTRK 109
           ++  G  GSGK+ L+   +       F  I K+ D +                 L+    
Sbjct: 186 LLFYGNPGSGKTYLSYCIAKSVLDMGFLVIYKTSDELIKNLREIRFNNDSGLESLLLECD 245

Query: 110 PVLLEDIDLLDFND---TQLFHIIN-SIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
            ++++D+     N+   T+LF+IIN  I      L+ T  T P         + SRL
Sbjct: 246 LLIVDDLGAEHLNEFSVTELFNIINKRILANKKMLISTNLTLPGITKQYSERIASRL 302


>gi|317486968|ref|ZP_07945778.1| ATPase [Bilophila wadsworthia 3_1_6]
 gi|316921843|gb|EFV43119.1| ATPase [Bilophila wadsworthia 3_1_6]
          Length = 407

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
           L    P  L  S   L V  +   A RL           ++L GP G GKS LA + +  
Sbjct: 3   LSQPLPERLRPSELALFVGQS-HLAERLTTLLEGPRLPSLLLFGPPGCGKSTLALLLARA 61

Query: 88  SRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
                 R S     L  +   +     ++L+++          F     + +     ++ 
Sbjct: 62  RGGNVLRLSAPEAGLQQLRRQLTGVDILVLDELHRFSKAQQDFFLP---LLESGDLTMIA 118

Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
             T   S+ V    L SRL    + ++  P+   L ++  +  A   + ++ ++  ++
Sbjct: 119 TTTENPSFSVTRQ-LLSRLHVLRLRQLGRPE---LLELGKRGAAALSVTLNDEILDFL 172


>gi|308061773|gb|ADO03661.1| recombination factor protein RarA [Helicobacter pylori Cuz20]
          Length = 391

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCTKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|297289911|ref|XP_002803619.1| PREDICTED: ATPase WRNIP1 [Macaca mulatta]
          Length = 619

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339


>gi|253583196|ref|ZP_04860394.1| holliday junction DNA helicase ruvB [Fusobacterium varium ATCC
           27725]
 gi|251833768|gb|EES62331.1| holliday junction DNA helicase ruvB [Fusobacterium varium ATCC
           27725]
          Length = 340

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + + +  +         L+           LE+ D+L  ++   
Sbjct: 55  ILLYGPPGLGKTTLAGVIATEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +N+  + 
Sbjct: 113 -HRLNNTVEE 121


>gi|226293608|gb|EEH49028.1| vacuolar protein sorting-associated protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 434

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 164 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENRPAIIF 229


>gi|162149341|ref|YP_001603802.1| transposase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787918|emb|CAP57517.1| transposase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 212

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 26/145 (17%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKS- 88
           FP    ++  D       E  VR +     +  R   V+L+G  G+GK+ LA   + ++ 
Sbjct: 22  FPAYKDLAGFDFSAAEVNEAMVRQL-HAGDFIDRADNVVLIGGPGTGKTHLATALAVQAI 80

Query: 89  -------RSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLF 127
                  R     ++  +L+      R   + E    +DL+  ++             LF
Sbjct: 81  EHHRKKIRFWSTVDLVNALEQEKTANRAGQIAERLLRLDLVILDELGYLPFSASGGALLF 140

Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152
           H+++ +++  +S+++T       WG
Sbjct: 141 HLLSRLYER-TSVIITTNLSFSEWG 164


>gi|73748992|ref|YP_308231.1| recombination factor protein RarA [Dehalococcoides sp. CBDB1]
 gi|73660708|emb|CAI83315.1| ATPase, AAA family [Dehalococcoides sp. CBDB1]
          Length = 457

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 21/137 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--N 122
             +I  GP GSGK+ LANI +    +      A S  S  +   + V+ E  + L     
Sbjct: 58  PSLIFWGPPGSGKTTLANIIAHSLDAHF---SALSAVSAGVADLRRVVEEARERLKLYHR 114

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  + +L+ A T   S+ V    L SR   A V  +
Sbjct: 115 RTILFIDEIHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSA-LLSR---AQVYVL 170

Query: 171 SLPDDDFLEKVIVKMFA 187
           +   +  +  ++ +   
Sbjct: 171 NSLSEKEISVILKRSLE 187


>gi|320159500|ref|YP_004172724.1| putative ATPase [Anaerolinea thermophila UNI-1]
 gi|319993353|dbj|BAJ62124.1| putative ATPase [Anaerolinea thermophila UNI-1]
          Length = 463

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 27/172 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + +  +++  F  I+  L  +    R     E+   L    T L
Sbjct: 56  IILWGPPGTGKTTLAQLIAQYTQAH-FEVISAVLAGVPDLRRVIQEAEERRKLYRRRTIL 114

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +     L+ A T    + V    L SR   + + ++   +
Sbjct: 115 FVDEVHRWNKAQQDALLPHVESGMITLVGATTENPYFEVISA-LVSR---SRIFQLLPLE 170

Query: 175 DDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +  L  +  +  +D  R      + +D +  A++++    S   A  L++ +
Sbjct: 171 EHHLSILFDRALSDPERGYGKISVQVDPEARAHLIRV---SGGDARNLLNAL 219


>gi|312381272|gb|EFR27057.1| hypothetical protein AND_06456 [Anopheles darlingi]
          Length = 848

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R  +L GP GSGK+ LA   + + +       A  L + L    +  + E  +   
Sbjct: 313 PPRGFLLHGPPGSGKTLLAQAIAGQLKIELIEVPATELVASLSGESEERIREVFEQAA 370



 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           PS V+ L GP G GK+ LA   ++++     S     L
Sbjct: 797 PSGVL-LCGPPGCGKTLLAKAVANEAGINFISVKGPEL 833


>gi|255280597|ref|ZP_05345152.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
 gi|255269062|gb|EET62267.1| cell division protein FtsH [Bryantella formatexigens DSM 14469]
          Length = 609

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 50/200 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 201 LLLVGPPGTGKTMLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 260

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++     +  +++ A   P S      
Sbjct: 261 VFIDEIDAIGKKRDGQLGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320

Query: 152 ---------GVCLPDLCSR--LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
                     V LPDL  R  +      KI L DD     +           +   +   
Sbjct: 321 RPGRFDRRVPVELPDLKGREEILKVHAKKIKLADDVDFHTIARMASGASGAELANIVNEA 380

Query: 201 IVQRMERSLVFAEKLVDKMD 220
            +    R++    K+V++ D
Sbjct: 381 AL----RAVRSGRKVVNQSD 396


>gi|294654757|ref|XP_456823.2| DEHA2A11286p [Debaryomyces hansenii CBS767]
 gi|199429126|emb|CAG84798.2| DEHA2A11286p [Debaryomyces hansenii]
          Length = 792

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 32/153 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P R ++L GP G+GK+ L    ++++ +   +                ++  I  + R  
Sbjct: 292 PPRGILLHGPPGTGKTMLLRCVANETNAHVLTVNGPSIVSKYLGETENAIRDIFEEARKF 351

Query: 109 --KPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + L++ID L  N                L  +++ +      +++ A   P S   
Sbjct: 352 QPSIIFLDEIDSLAPNRNSDDSGETESRVVATLLTMMDGMGDTGRIVVVGATNRPNSID- 410

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
             P L    +    V+I +PD +    +++K F
Sbjct: 411 --PALRRPGRFDQEVEIGIPDVEARGDILIKQF 441


>gi|109069429|ref|XP_001090565.1| PREDICTED: ATPase WRNIP1 isoform 2 [Macaca mulatta]
          Length = 614

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339


>gi|47523346|ref|NP_998914.1| spastin [Sus scrofa]
 gi|33332017|gb|AAQ11224.1| spastin [Sus scrofa]
          Length = 530

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 288 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 337


>gi|307314388|ref|ZP_07593994.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C]
 gi|306899086|gb|EFN29728.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C]
          Length = 436

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + S ++     + S I   +  +              
Sbjct: 49  ASGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D+  LE+++ +  A     + +D +  A +++  +        L +++  
Sbjct: 160 -ARVLTFKPHDEASLEELLKRAEAAEGKPLPLDDEARASLIRMADGDGRAVLTLAEEVWR 218

Query: 222 LA 223
            A
Sbjct: 219 AA 220


>gi|89097402|ref|ZP_01170291.1| ATP-dependent metalloprotease FtsH [Bacillus sp. NRRL B-14911]
 gi|89087698|gb|EAR66810.1| ATP-dependent metalloprotease FtsH [Bacillus sp. NRRL B-14911]
          Length = 579

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 16/75 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P + ++L GP G+GK+ LA   + +  ++ FS    S + + +                 
Sbjct: 185 PPKGILLYGPPGTGKTLLAQAIAKEIGASFFSTSGSSFNEMFVGVGASRVRSLFQNARKH 244

Query: 111 ----VLLEDIDLLDF 121
               V ++++D L  
Sbjct: 245 SPAVVFIDEVDALAG 259


>gi|307175886|gb|EFN65701.1| 26S protease regulatory subunit 4 [Camponotus floridanus]
          Length = 440

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 45/206 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146
                 +++ID +                  +  ++N +     + D  ++M        
Sbjct: 278 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVVMATNRIETL 337

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          ++  LPD+    ++     +   +  D  LA  I+ + +
Sbjct: 338 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFNIHTSRMTLAPDVNLAELIMAKDD 389

Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231
            S    + +  +   +AL      +T
Sbjct: 390 LSGADIKAICTEAGLMALRERRMKVT 415


>gi|302817378|ref|XP_002990365.1| hypothetical protein SELMODRAFT_131462 [Selaginella moellendorffii]
 gi|300141927|gb|EFJ08634.1| hypothetical protein SELMODRAFT_131462 [Selaginella moellendorffii]
          Length = 489

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 64/159 (40%), Gaps = 43/159 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------------LIDTR 108
           P R ++L GP G+GK+ +A   + ++ +T     + ++ S+              L +  
Sbjct: 250 PCRGMLLFGPPGTGKTHIAKAIASEANTTFIGITSSTISSMWYGEAEKLAKAVFTLAEKL 309

Query: 109 KP--VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            P  + ++++D +     +L       ++      +T+R+    +      L ++     
Sbjct: 310 APTIIFVDEVDSILGARGEL-------NED-----VTSRSVKNEFMTAWDGLRTK----- 352

Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
                  DD   ++V+V    +R   +D+ +   + +R+
Sbjct: 353 -------DD---KRVMVLAATNRPFDLDEAVIRRLPRRI 381


>gi|296224141|ref|XP_002757919.1| PREDICTED: spastin isoform 1 [Callithrix jacchus]
          Length = 616

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 374 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 423


>gi|188534279|ref|YP_001908076.1| recombination factor protein RarA [Erwinia tasmaniensis Et1/99]
 gi|188029321|emb|CAO97198.1| Putative polynucleotide ATPase protein [Erwinia tasmaniensis
           Et1/99]
          Length = 447

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 64/201 (31%), Gaps = 42/201 (20%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I     ++   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEIIGHYGQADVERISAVTSGIKDIREAIERA----RQNRHAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               D  +  V+ +   D  R      I +       I Q +      A + ++ ++ +A
Sbjct: 163 KSLTDKDISAVLDQAMQDSERGYGKDNIVLPDNTRDMIAQLVN---GDARRALNTLEMMA 219

Query: 224 LSR------GMGITRSLAAEV 238
                       +T +L  EV
Sbjct: 220 DMAEVNGKGKRELTSTLLNEV 240


>gi|108761837|ref|YP_631057.1| recombination factor protein RarA [Myxococcus xanthus DK 1622]
 gi|108465717|gb|ABF90902.1| ATPase, AAA family [Myxococcus xanthus DK 1622]
          Length = 444

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 37/195 (18%)

Query: 70  VGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDT---------RKPVLLED 115
            GP G GK+ LA + +    +        S+    +  ++ +          R  + +++
Sbjct: 60  WGPPGVGKTTLARMMATGVDAEFVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDE 119

Query: 116 IDLLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           I     N  +  L H+     +    +L+ A T  VS+ V  P L SR     V ++   
Sbjct: 120 IHRWAKNVQEQALPHV-----ESGLFVLLGATTENVSFEVR-PALVSR---CRVFQLKEL 170

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--L 224
               ++  + +   D       R + + +     + +     +    K +  ++  A   
Sbjct: 171 TVADIQSALTRALGDSKRGLGARNLSVGEGALTLLAKGG---VGDVRKALGALELAASLT 227

Query: 225 SRGMGITRSLAAEVL 239
           + G  IT   A E +
Sbjct: 228 ADGAEITPETAREAV 242


>gi|9651739|gb|AAF91246.1|AF227502_1 proteasome regulatory ATPase subunit 4 [Trypanosoma brucei]
 gi|261332358|emb|CBH15353.1| Tbgamb.27571 protease regulatory ATPase subunit,putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 399

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 39/158 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     +A S+    I     VL          
Sbjct: 176 PPKGVLLYGPPGTGKTLLAKAIASNVDAAFLKIVASSIVDKYIGESARVLREMFAFARDH 235

Query: 113 ------LEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWG 152
                 ++++D +                   +L H ++   +     ++ A   P +  
Sbjct: 236 EPCIIFIDEVDAIGGKRIEGSSSDREVQRTLMELLHQMDGFEKLGKVKVIMATNRPDTLD 295

Query: 153 VCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFA 187
             L      ++   +   ++I LP++     V+    +
Sbjct: 296 PAL------MRPGRLDRKIEIGLPNEAGRLDVLKIHAS 327


>gi|14714682|gb|AAH10482.1| Werner helicase interacting protein 1 [Mus musculus]
          Length = 660

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQD 334


>gi|254540120|ref|NP_084491.3| ATPase WRNIP1 [Mus musculus]
 gi|73622086|sp|Q91XU0|WRIP1_MOUSE RecName: Full=ATPase WRNIP1; AltName: Full=Werner
           helicase-interacting protein 1
 gi|26334781|dbj|BAC31091.1| unnamed protein product [Mus musculus]
 gi|56206896|emb|CAI25647.1| Werner helicase interacting protein 1 [Mus musculus]
 gi|74195651|dbj|BAE39633.1| unnamed protein product [Mus musculus]
 gi|74215304|dbj|BAE41868.1| unnamed protein product [Mus musculus]
 gi|74221135|dbj|BAE42069.1| unnamed protein product [Mus musculus]
 gi|148700413|gb|EDL32360.1| Werner helicase interacting protein 1, isoform CRA_c [Mus musculus]
          Length = 660

 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQD 334


>gi|323140178|ref|ZP_08075161.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322394566|gb|EFX97184.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 453

 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 75/213 (35%), Gaps = 43/213 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS        + +                   
Sbjct: 193 RGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSHFVEMFVGVGASRVRDMFDQAKKNAP 252

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             V +++ID +            D  +  L  +   ++     +  +L+ A   P     
Sbjct: 253 CIVFVDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 312

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      ++       +++  PD    EK++      R++ +   +   +V R      
Sbjct: 313 AL------MRPGRFDRQIQVPNPDFIGREKILKVHA--RKVPLAPDVDLKVVARGTPGFS 364

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            A  L++ ++  AL       R +  +  ++++
Sbjct: 365 GA-DLMNLVNEAALLAARRSKRIVTNQEFEDSR 396


>gi|322370336|ref|ZP_08044895.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
 gi|320550044|gb|EFW91699.1| cell division control protein 48 [Haladaptatus paucihalophilus
           DX253]
          Length = 713

 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 74/207 (35%), Gaps = 46/207 (22%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------- 100
            L ++  + P   V+L GP G+GK+ LA   + +S     S     L             
Sbjct: 482 NLFEATRTEPPSGVLLYGPPGTGKTLLARALAGESDVNFVSVAGPELLDRYVGESEKSVR 541

Query: 101 ---DSILIDTRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTART 146
              D     +   +  ++ID L               +QL   ++ + +  + +++ A  
Sbjct: 542 EVFDRARQASPAIIFFDEIDALASQRGESHEVTERVVSQLLTELDGLTENPNLVVLAATN 601

Query: 147 FPVSWGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
              +    L  L   RL++   ++I  P ++   K++     D+ +  D  L  ++   +
Sbjct: 602 RREAIDPAL--LRPGRLES--HIEIPAPGEEGRRKILSVHAGDKPLADDIDL-DWLATEL 656

Query: 206 E-----------R--SLVFAEKLVDKM 219
           E           R  S+    +  D++
Sbjct: 657 EGYTGADIEALVRAASMRAIREAADEL 683


>gi|224058199|ref|XP_002299463.1| predicted protein [Populus trichocarpa]
 gi|222846721|gb|EEE84268.1| predicted protein [Populus trichocarpa]
          Length = 932

 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 21/100 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P   V+L G  G GK+ +A   + ++    +         +L+                 
Sbjct: 451 PPHGVLLEGAPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN 510

Query: 111 ----VLLEDIDLLDFNDTQLF-----HIINSIHQYDSSLL 141
               + +++ID L      +F     H+ N+  Q   + L
Sbjct: 511 KPSVIFIDEIDALATRRQGIFKESTDHLYNAATQERETTL 550


>gi|197304052|ref|ZP_03169081.1| hypothetical protein RUMLAC_02786 [Ruminococcus lactaris ATCC
           29176]
 gi|197296877|gb|EDY31448.1| hypothetical protein RUMLAC_02786 [Ruminococcus lactaris ATCC
           29176]
          Length = 443

 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 24/155 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + ++ + +  F  I  ++             +D+  +    T L
Sbjct: 60  LIFYGPPGTGKTTLAKVIANTTSAE-FKQINATVAGKKDMEEVVKAAKDLQGMYGKKTIL 118

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   +++ ++   +
Sbjct: 119 FIDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SSIFELKPLE 174

Query: 175 DDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV 202
            + ++K++V+   D  + +      ID     ++ 
Sbjct: 175 KEDIKKLLVRAVEDTEKGMGSFHAQIDPDALEFLA 209


>gi|170593977|ref|XP_001901740.1| AAA ATPase [Brugia malayi]
 gi|158590684|gb|EDP29299.1| AAA ATPase, putative [Brugia malayi]
          Length = 353

 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 41/140 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------DSILIDTRK- 109
           P + V+L GP G GK+ LA + +  + +   +    SL            D++    +K 
Sbjct: 121 PPKGVLLYGPPGCGKTLLAKVIARAANARFINLQVSSLCDKWYGESQKLADAVFSVAQKF 180

Query: 110 ---PVLLEDIDLLDFNDTQLFH------------IINSIHQYDSSLLMTA---------- 144
               + +++ID    +     H            + +     D ++++            
Sbjct: 181 QPTIIFIDEIDSFLRDRNTQDHEATAMMKAQFMCLWDGFASSDDAIVVLGATNRPNDVDS 240

Query: 145 ---RTFPVSWGVCLPDLCSR 161
              R  P  + V LP L SR
Sbjct: 241 AILRRMPARFYVPLPSLESR 260


>gi|270307903|ref|YP_003329961.1| DNA replication protein [Dehalococcoides sp. VS]
 gi|270153795|gb|ACZ61633.1| DNA replication protein [Dehalococcoides sp. VS]
          Length = 470

 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105
             A   A+        W    ++  GPSG+GK+ LA   ++K           S+   ++
Sbjct: 110 SQAYNAALDFASKPAGW----LVFSGPSGAGKTHLAAAIANK---------RLSMGQPVL 156

Query: 106 DTRKPVLLEDI 116
             R   L++D+
Sbjct: 157 YKRASELIDDL 167



 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 30/151 (19%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104
            A  L   +   P   ++  G +G GK+ LA+   ++        +   +   L      
Sbjct: 298 AAYNLALEFSRNPESWLVFQGETGCGKTHLASAIVNERYRQGKPAMFVVVPEFLDHLRST 357

Query: 105 ---------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTART 146
                          +   K ++L+D        +   +L+ +IN  +    + ++T R 
Sbjct: 358 FSPESKTSYDQMFDAVKNAKLLVLDDFGEQSSTPWAQEKLYQVINYRYNRRLATVITTRC 417

Query: 147 FPVSWGVCLPDLCSRL---KAATVVKISLPD 174
                 + +    SR    + + V  I+ P+
Sbjct: 418 QLSEIEIAI---SSRFVDPQISMVFNITAPN 445


>gi|307354221|ref|YP_003895272.1| 26S proteasome subunit P45 family [Methanoplanus petrolearius DSM
           11571]
 gi|307157454|gb|ADN36834.1| 26S proteasome subunit P45 family [Methanoplanus petrolearius DSM
           11571]
          Length = 411

 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G+GK+ LA   + ++ +     +   L    I     ++ E  +    N
Sbjct: 185 PPKGVLLYGPPGTGKTLLARAVAHETNAKFLRVVGSELVQKYIGEGARLVRELFEHAKMN 244


>gi|167580959|ref|ZP_02373833.1| recombination factor protein RarA [Burkholderia thailandensis
           TXDOH]
          Length = 436

 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             +D L +++ K   D     +  D K    +V   +     A + ++ ++  
Sbjct: 163 LTEDELRQLL-KRAQDTALDGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211


>gi|148508161|gb|ABQ75952.1| AAA-type ATPase [uncultured haloarchaeon]
          Length = 752

 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 72/192 (37%), Gaps = 41/192 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 232 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEE 291

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLM--TARTFPVSWG 152
           +   + ++++D +                 QL  +++ +      +++  T R   V   
Sbjct: 292 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLETRGQVIVIGATNRVDSVDPA 351

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
           +  P    R      ++I +PD+   ++++      R + +   +   Y+    + +  F
Sbjct: 352 LRRP---GRFD--REIEIGVPDEVGRKEILQ--IHTRGMPLSDDVSLDYLA---DETHGF 401

Query: 212 AEKLVDKMDNLA 223
               ++ +   A
Sbjct: 402 VGADIESLTKEA 413



 Score = 35.5 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G+GK+ +A   ++++ +   S
Sbjct: 509 VLLYGPPGTGKTLIAKAVANETNANFIS 536


>gi|317970117|ref|ZP_07971507.1| cell division protein FtsH4 [Synechococcus sp. CB0205]
          Length = 626

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS  A     + +                     
Sbjct: 200 VLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVELFVGVGASRVRDLFRQAKEKAPCI 259

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++   +    +L+ A   P      L
Sbjct: 260 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFAENSGVILLAATNRPDVLDAAL 319

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       + + LPD    E ++      R +  +  L+ +   R       A
Sbjct: 320 ------MRPGRFDRRIHVDLPDRRGREAILAVHARSRPLEPEVSLSDW-ASRTP-GFSGA 371

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  A+     
Sbjct: 372 -DLSNLLNEAAILTARR 387


>gi|332654867|ref|ZP_08420609.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
 gi|332516210|gb|EGJ45818.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
          Length = 605

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 44/140 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 203 ALLVGPPGTGKTLLAKAVAGEANVPFFSIAGSEFVEMFVGRGAAKVRDLFKQANEKAPCI 262

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++        +++ A   P S      
Sbjct: 263 VFIDEIDTIGKKRDGQLAGNDEREQTLNQLLTEMDGFDGSKGVVVLAATNRPDSLDPALL 322

Query: 152 ---------GVCLPDLCSRL 162
                     V LPDL  R+
Sbjct: 323 RPGRFDRRIPVELPDLQGRI 342


>gi|300865996|ref|ZP_07110730.1| vesicle-fusing ATPase [Oscillatoria sp. PCC 6506]
 gi|300335987|emb|CBN55888.1| vesicle-fusing ATPase [Oscillatoria sp. PCC 6506]
          Length = 611

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 43/160 (26%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS------------TRFSNIAKSLDSILIDTRKP-- 110
           R ++L GP G+GK+ LA   + ++R+                   +++  +    R+   
Sbjct: 389 RGILLWGPPGTGKTLLAKAVASQARANFICVNGPELLSRWVGASEQAVRELFTKARQASP 448

Query: 111 --VLLEDIDLLDFND------------------TQLFHIINSIHQYDSSLLMTARTFPVS 150
             V +++ID L                      T+L  + NS +     LL+ A   P  
Sbjct: 449 CVVFIDEIDSLAPARGRHSGDSGVSDRVVGQLLTELDGLHNSANV----LLIGATNRPEI 504

Query: 151 WGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADR 189
               L  L S RL     +K+ LP+ +    ++     DR
Sbjct: 505 IDPAL--LRSGRLD--LQLKVDLPNLENRLAILEIHNQDR 540



 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 28/130 (21%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLD 101
            L++     P++ V+LVGP G+GK+  A   +D+      +               + L 
Sbjct: 112 ELLEKLGLEPTKGVLLVGPPGTGKTLTARALADELGVNYIALAGPEVMSKYYGEAEQKLR 171

Query: 102 SILIDTRK----PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTAR 145
           +I     K     V +++ID L  +              QL  +++   Q    +L+ A 
Sbjct: 172 AIFEKAAKNAPCLVFIDEIDSLAPDRSKVEGEVEKRLVAQLLSLMDGFAQTKGVILLAAT 231

Query: 146 TFPVSWGVCL 155
             P      L
Sbjct: 232 NRPDHLDPAL 241


>gi|289432988|ref|YP_003462861.1| ATPase AAA [Dehalococcoides sp. GT]
 gi|288946708|gb|ADC74405.1| AAA ATPase central domain protein [Dehalococcoides sp. GT]
          Length = 452

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 21/137 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--N 122
             +I  GP GSGK+ LANI +    +      A S  S  +   + V+ E  + L     
Sbjct: 53  PSLIFWGPPGSGKTTLANIIAHSLDAHF---SALSAVSAGVADLRRVVEEARERLKLYHR 109

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  + +L+ A T   S+ V    L SR   A V  +
Sbjct: 110 RTILFIDEIHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSA-LLSR---AQVYVL 165

Query: 171 SLPDDDFLEKVIVKMFA 187
           +   +  +  ++ +   
Sbjct: 166 NSLSEKEISVILKRSLE 182


>gi|164687537|ref|ZP_02211565.1| hypothetical protein CLOBAR_01178 [Clostridium bartlettii DSM
           16795]
 gi|164603311|gb|EDQ96776.1| hypothetical protein CLOBAR_01178 [Clostridium bartlettii DSM
           16795]
          Length = 338

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA+I +++           +++           LE+ D+L  +
Sbjct: 57  PLDHVLLYGPPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAALLTNLEENDVLFID 116

Query: 123 DTQLFHIINSIHQY 136
           +    H IN   + 
Sbjct: 117 EI---HRINRSVEE 127


>gi|56758882|gb|AAW27581.1| SJCHGC09453 protein [Schistosoma japonicum]
          Length = 802

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 33/166 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   +++S S  F                SN+ K+ +    +
Sbjct: 234 PPRGILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + Q    ++M A   P S    
Sbjct: 294 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNS---V 350

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
            P L  R  +    ++I +PD     +++     + ++  D  L  
Sbjct: 351 DPALR-RFGRFDREIEIGIPDSIGRLEILRIHTKNVRLAKDVDLVQ 395



 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   + + ++   S     L ++     +  + +  D  
Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIASECQANFISIKGPELLTMWFGESEANVRDIFDKA 563


>gi|73980099|ref|XP_850973.1| PREDICTED: similar to spastin isoform 1 isoform 1 [Canis
           familiaris]
          Length = 624

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 382 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 431


>gi|15965138|ref|NP_385491.1| recombination factor protein RarA [Sinorhizobium meliloti 1021]
 gi|15074318|emb|CAC45964.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 436

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + S ++     + S I   +  +              
Sbjct: 49  ASGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D+  LE+++ +  A     + +D +  A +++  +        L +++  
Sbjct: 160 -ARVLTFKPHDEASLEELLKRAEAAEGKPLPLDDEARASLIRMADGDGRAVLTLAEEVWR 218

Query: 222 LA 223
            A
Sbjct: 219 AA 220


>gi|11875211|ref|NP_055761.2| spastin isoform 1 [Homo sapiens]
 gi|114576879|ref|XP_001164367.1| PREDICTED: spastin isoform 1 [Pan troglodytes]
 gi|12230611|sp|Q9UBP0|SPAST_HUMAN RecName: Full=Spastin; AltName: Full=Spastic paraplegia 4 protein
 gi|6273491|emb|CAB60141.1| spastin protein [Homo sapiens]
 gi|6273493|emb|CAB60208.1| spastin protein [Homo sapiens]
 gi|119620866|gb|EAX00461.1| spastin, isoform CRA_a [Homo sapiens]
 gi|311348858|gb|ADP91574.1| spastin [Homo sapiens]
 gi|311348861|gb|ADP91576.1| spastin [Homo sapiens]
 gi|311348864|gb|ADP91578.1| spastin [Homo sapiens]
 gi|311348867|gb|ADP91580.1| spastin [Homo sapiens]
 gi|311348870|gb|ADP91582.1| spastin [Homo sapiens]
 gi|311348873|gb|ADP91584.1| spastin [Homo sapiens]
 gi|311348876|gb|ADP91586.1| spastin [Homo sapiens]
 gi|311348879|gb|ADP91588.1| spastin [Homo sapiens]
 gi|311348882|gb|ADP91590.1| spastin [Homo sapiens]
 gi|311348885|gb|ADP91592.1| spastin [Homo sapiens]
 gi|311348888|gb|ADP91594.1| spastin [Homo sapiens]
 gi|311348891|gb|ADP91596.1| spastin [Homo sapiens]
 gi|311348894|gb|ADP91598.1| spastin [Homo sapiens]
 gi|311348897|gb|ADP91600.1| spastin [Homo sapiens]
 gi|311348900|gb|ADP91602.1| spastin [Homo sapiens]
 gi|311348903|gb|ADP91604.1| spastin [Homo sapiens]
 gi|311348906|gb|ADP91606.1| spastin [Homo sapiens]
 gi|311348909|gb|ADP91608.1| spastin [Homo sapiens]
 gi|311348912|gb|ADP91610.1| spastin [Homo sapiens]
 gi|311348915|gb|ADP91612.1| spastin [Homo sapiens]
 gi|311348918|gb|ADP91614.1| spastin [Homo sapiens]
 gi|311348921|gb|ADP91616.1| spastin [Homo sapiens]
 gi|311348924|gb|ADP91618.1| spastin [Homo sapiens]
 gi|311348927|gb|ADP91620.1| spastin [Homo sapiens]
 gi|311348930|gb|ADP91622.1| spastin [Homo sapiens]
 gi|311348933|gb|ADP91624.1| spastin [Homo sapiens]
 gi|311348936|gb|ADP91626.1| spastin [Homo sapiens]
 gi|311348939|gb|ADP91628.1| spastin [Homo sapiens]
 gi|311348942|gb|ADP91630.1| spastin [Homo sapiens]
 gi|311348945|gb|ADP91632.1| spastin [Homo sapiens]
 gi|311348948|gb|ADP91634.1| spastin [Homo sapiens]
 gi|311348951|gb|ADP91636.1| spastin [Homo sapiens]
 gi|311348954|gb|ADP91638.1| spastin [Homo sapiens]
 gi|311348957|gb|ADP91640.1| spastin [Homo sapiens]
 gi|311348960|gb|ADP91642.1| spastin [Homo sapiens]
 gi|311348963|gb|ADP91644.1| spastin [Homo sapiens]
 gi|311348966|gb|ADP91646.1| spastin [Homo sapiens]
 gi|311348969|gb|ADP91648.1| spastin [Homo sapiens]
 gi|311348972|gb|ADP91650.1| spastin [Homo sapiens]
 gi|311348975|gb|ADP91652.1| spastin [Homo sapiens]
          Length = 616

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 374 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 423


>gi|307322100|ref|ZP_07601476.1| AAA ATPase central domain protein [Sinorhizobium meliloti AK83]
 gi|306892282|gb|EFN23092.1| AAA ATPase central domain protein [Sinorhizobium meliloti AK83]
          Length = 436

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + S ++     + S I   +  +              
Sbjct: 49  ASGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D+  LE+++ +  A     + +D +  A +++  +        L +++  
Sbjct: 160 -ARVLTFKPHDEASLEELLKRAEAAEGKPLPLDDEARASLIRMADGDGRAVLTLAEEVWR 218

Query: 222 LA 223
            A
Sbjct: 219 AA 220


>gi|296114938|ref|ZP_06833584.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978496|gb|EFG85228.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
          Length = 466

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 26/144 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL G  G GK+ +A + +  +   RF  I+     +    R     E+      N    
Sbjct: 87  LILWGGPGVGKTTIARLLAHAAG-LRFVQISAVFSGVADLKR---AFEEARRRAANGEGT 142

Query: 126 -LF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q          ++++   T      +       L SR     V+ +
Sbjct: 143 LLFVDEIHRFNRAQQDGFLPVVEDGTVVLVGATTENPSFALNGA---LLSR---CQVLVL 196

Query: 171 SLPDDDFLEKVIVKMFADRQIFID 194
              DD  LE+++ +   +    + 
Sbjct: 197 RRLDDAALEQLLCRAEGETGRALP 220


>gi|260101304|ref|ZP_05751541.1| AAA family ATPase [Lactobacillus helveticus DSM 20075]
 gi|260084889|gb|EEW69009.1| AAA family ATPase [Lactobacillus helveticus DSM 20075]
          Length = 89

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
            +IL GP G+GK+ LA I + ++++   +  A +
Sbjct: 11 PSLILWGPPGTGKTTLAEIIAKRTKAHFITFSAVT 45


>gi|239906239|ref|YP_002952979.1| putative ABC transporter ATP-binding protein [Desulfovibrio
           magneticus RS-1]
 gi|239796104|dbj|BAH75093.1| putative ABC transporter ATP-binding protein [Desulfovibrio
           magneticus RS-1]
          Length = 666

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--------SRVVI 68
           + D+P  +   L FS P      R D  V +A + A    D  P WP         + V 
Sbjct: 301 RGDRPDVRGRTLDFSLPEPE---RCDKTVCAAADLAYHWPDRAPLWPPLTFQLFRGQKVA 357

Query: 69  LVGPSGSGKSCLA 81
           LVG +G+GK+ L 
Sbjct: 358 LVGHNGAGKTTLL 370


>gi|227485726|ref|ZP_03916042.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172]
 gi|227236281|gb|EEI86296.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172]
          Length = 680

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + +++   F+        + +                     
Sbjct: 209 ILLVGPPGTGKTLLAKAVAGEAKVPFFTISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268

Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151
           V +++ID +            D  +  L  ++N        +  +L+ A   P       
Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDAAEGVVLLAATNRPEILDPAL 328

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 329 TRPGRFDRQVQVELPDLKGR 348


>gi|225678772|gb|EEH17056.1| suppressor protein of bem1/bed5 double mutants [Paracoccidioides
           brasiliensis Pb03]
          Length = 434

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 164 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENRPAIIF 229


>gi|195384848|ref|XP_002051124.1| GJ14536 [Drosophila virilis]
 gi|194147581|gb|EDW63279.1| GJ14536 [Drosophila virilis]
          Length = 356

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T+R  P           SR      +++  P ++ +  V+        + +  +LA  +V
Sbjct: 168 TSRIIPAI--------RSR---CLGIRVPAPSENEMTAVLQSTCKREGLVLPPELAKRVV 216

Query: 203 QRMERSLVFAEKLVDK 218
           ++ ER++  A  +++ 
Sbjct: 217 EKSERNMRRALLMLEA 232


>gi|332227157|ref|XP_003262758.1| PREDICTED: spastin isoform 1 [Nomascus leucogenys]
          Length = 616

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 374 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 423


>gi|325478877|gb|EGC81987.1| ATP-dependent metallopeptidase HflB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 651

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ +A   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLMAQAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268

Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151
           V +++ID +            D  +  L  ++N        +  +L+ A   P       
Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLAATNRPEILDPAL 328

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 329 TRPGRFDRQVQVELPDLKGR 348


>gi|284161924|ref|YP_003400547.1| ATPase AAA [Archaeoglobus profundus DSM 5631]
 gi|284011921|gb|ADB57874.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus profundus DSM
           5631]
          Length = 1217

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GK+ LA   ++++ +   S     L S  +           + +  +
Sbjct: 546 PPKGILLYGPPGTGKTLLAKAVANEANANFISVKGPELLSKWVG----------ESITGD 595

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSW 151
           +  L              ++TA     +W
Sbjct: 596 EIVL------AKVNGKLKVLTAEELYNAW 618



 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 33/162 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDT--R 108
           P + V+L GP G+GK+ +A   +++  +                   + L  I  +    
Sbjct: 215 PPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPVSGPEIMSKYYGESEQRLREIFEEAKEN 274

Query: 109 KPVLL--EDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            P ++  ++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 275 APSIIFFDEIDAIAPKREEVTGEVERRVVAQLLALMDGLEARGDVIVIGATNRPDAID-- 332

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
            P L    +    ++I +PD +  ++++      R + I+  
Sbjct: 333 -PALRRPGRFDREIEIGVPDREGRKEILQ--IHTRGMPIEPD 371


>gi|257067200|ref|YP_003153456.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM
           20548]
 gi|256799080|gb|ACV29735.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM
           20548]
          Length = 662

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ +A   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLMAQAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268

Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151
           V +++ID +            D  +  L  ++N        +  +L+ A   P       
Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLAATNRPEILDPAL 328

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 329 TRPGRFDRQVQVELPDLKGR 348


>gi|162148061|ref|YP_001602522.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542678|ref|YP_002274907.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786638|emb|CAP56221.1| ATPase, AAA family protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530355|gb|ACI50292.1| AAA ATPase central domain protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 473

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 31/161 (19%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           R++D         +IL G  G GK+ +A + +D +   RF  ++     +    R     
Sbjct: 74  RMLDR---GSLASLILWGGPGVGKTTIARLLADAAG-LRFVQLSAVFSGVADLKR---AF 126

Query: 114 EDIDLL--DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPD 157
           +D   L      T LF    H  N   Q          ++++   T      +       
Sbjct: 127 DDARRLGEAGQGTLLFVDEIHRFNRAQQDGFLPVVEDGTVVLVGATTENPSFALNGA--- 183

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKM--FADRQIFIDKK 196
           L SR     V+ +   DD  LE+++ +      R + +   
Sbjct: 184 LLSR---CQVMVLRRLDDPALERLLCRAEEATGRALPLTPD 221


>gi|160893315|ref|ZP_02074102.1| hypothetical protein CLOL250_00864 [Clostridium sp. L2-50]
 gi|156865007|gb|EDO58438.1| hypothetical protein CLOL250_00864 [Clostridium sp. L2-50]
          Length = 438

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 77/201 (38%), Gaps = 32/201 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDF 121
             +I  GP G+GK+ LA + +  +++      A +     ++     ++E+      +  
Sbjct: 53  GSLIFYGPPGTGKTTLAMVIAHTTKADFKQINATTSGKKDMEQ----IIEEAKNTKAMYG 108

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + +L+ A T    + V    L SR   + + +
Sbjct: 109 RRTILFIDEIHRFNKSQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LISR---SNIFE 164

Query: 170 ISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDK--MDN 221
           +     + ++ +I+K   D++      + ID     ++    E     A   V+   + +
Sbjct: 165 LKPLSKENIKDIILKAVYDQKGMGAFNVCIDDDAVEFLSDMSEGDARSALNAVELGVLSS 224

Query: 222 LALSRGM-GITRSLAAEVLKE 241
              + G   IT ++A E ++ 
Sbjct: 225 EPAADGRIHITLAVAEECIQR 245


>gi|145509587|ref|XP_001440732.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407960|emb|CAK73335.1| unnamed protein product [Paramecium tetraurelia]
          Length = 466

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 14/76 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G+GK+ LA   + +   T FS  +  L S  +   + ++ E            
Sbjct: 200 ILLYGPPGTGKTFLAKACATECDGTFFSVSSADLISKFVGESERLIKE------------ 247

Query: 127 FHIINSIHQYDSSLLM 142
             + N   +   +++ 
Sbjct: 248 --LFNMARESKPTIIF 261


>gi|294905732|ref|XP_002777666.1| 26S protease subunit regulatory subunit 6a, putative [Perkinsus
           marinus ATCC 50983]
 gi|239885557|gb|EER09482.1| 26S protease subunit regulatory subunit 6a, putative [Perkinsus
           marinus ATCC 50983]
          Length = 459

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 62/171 (36%), Gaps = 39/171 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + ++L GP G+GK+ +A   +  + +T        L  + I     ++          
Sbjct: 237 PPKGLLLYGPPGTGKTMMARSCAAATNATFLKLAGPQLVQMFIGDGSKMVRDAFNLAKEK 296

Query: 113 ------LEDIDLLDFN-------------DTQLFHIINSIH---QYDSSLLMTARTFPVS 150
                 ++++D +                   +  ++N +      D   ++ A      
Sbjct: 297 APAIIFIDELDAIGMKRSAGGELSGVREVQRTMLELLNQLDGFSSDDRVKVIAATNRADM 356

Query: 151 WGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
               L  L S RL     V++ LP++D  ++++      R++ ++K    +
Sbjct: 357 LDPAL--LRSGRLD--RKVELPLPNEDARKRILQ--IHSRKMNVNKDDVNF 401


>gi|226288798|gb|EEH44310.1| 26S protease regulatory subunit 6A [Paracoccidioides brasiliensis
           Pb18]
          Length = 462

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 248 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 307

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 365

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 366 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 401


>gi|255590995|ref|XP_002535413.1| conserved hypothetical protein [Ricinus communis]
 gi|223523182|gb|EEF26968.1| conserved hypothetical protein [Ricinus communis]
          Length = 252

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-----------RSTRFSNIAKSLDSILIDTRKPVLLED 115
           V+LVG  G+GK+ LA     ++            +   +N+ ++           + L +
Sbjct: 95  VVLVGGPGTGKTHLATAIGTQAIEQHSCRVRFFSTVELANLLEAEKQQGRSGNLAMKLVN 154

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
            DL+  ++             LFH+I+ +++  +SL++T       WG
Sbjct: 155 TDLVILDEVGYLPFSQTGGALLFHLISKLYER-TSLIITTNLGFSEWG 201


>gi|154757528|gb|AAI51634.1| WRNIP1 protein [Bos taurus]
          Length = 545

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+            ++   + K   + D+     N+ 
Sbjct: 142 PSLILWGPPGCGKTTLAHIIANNSKKHSI-----RFVTLSATSAKTTDVRDVIKQAQNEK 196

Query: 125 QLF-----------HIINSIHQY 136
           + F           H  N   Q 
Sbjct: 197 RFFKRKTILFIDEIHRFNKSQQD 219


>gi|117927413|ref|YP_871964.1| Mername-AA223 peptidase [Acidothermus cellulolyticus 11B]
 gi|117647876|gb|ABK51978.1| membrane protease FtsH catalytic subunit [Acidothermus
           cellulolyticus 11B]
          Length = 654

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 43/210 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GP G+GK+ LA   + ++    +S        + +                     
Sbjct: 187 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFQQAKENAPAI 246

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 247 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 306

Query: 156 PDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD +  + ++      +    D  L   I +R       A
Sbjct: 307 ------LRPGRFDRHIVVDRPDLEGRKGILRVHAKGKPFAPDVDL-DVIARRTP-GFTGA 358

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             L + ++  AL       + +    L+E+
Sbjct: 359 -DLANVINEAALLTARANQKQITMATLEES 387


>gi|110669061|ref|YP_658872.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
           walsbyi DSM 16790]
 gi|109626808|emb|CAJ53276.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
           walsbyi DSM 16790]
          Length = 742

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 72/192 (37%), Gaps = 41/192 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEE 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLM--TARTFPVSWG 152
           +   + ++++D +                 QL  +++ +      +++  T R   V   
Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLETRGQVIVIGATNRVDSVDPA 341

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
           +  P    R      ++I +PD+   ++++      R + +   +   Y+    + +  F
Sbjct: 342 LRRP---GRFD--REIEIGVPDEVGRKEILQ--IHTRGMPLSDDVSLDYLA---DETHGF 391

Query: 212 AEKLVDKMDNLA 223
               ++ +   A
Sbjct: 392 VGADIESLTKEA 403



 Score = 35.5 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G+GK+ +A   ++++ +   S
Sbjct: 499 VLLYGPPGTGKTLIAKAVANETNANFIS 526


>gi|89896741|ref|YP_520228.1| hypothetical protein DSY3995 [Desulfitobacterium hafniense Y51]
 gi|89336189|dbj|BAE85784.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 234

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 16/61 (26%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            + + L+GPSGSGKS L +I                L ++   T   V ++DID+   ++
Sbjct: 35  GQFLALLGPSGSGKSTLLSI----------------LGALNPPTEGKVFIDDIDIYGLDE 78

Query: 124 T 124
            
Sbjct: 79  E 79


>gi|332205010|gb|EGJ19074.1| hypothetical protein SPAR93_0134 [Streptococcus pneumoniae
          GA47368]
          Length = 213

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
          +  A R+   W       ++L G +G+GKS LA
Sbjct: 60 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 92


>gi|332201913|gb|EGJ15982.1| hypothetical protein SPAR69_0024 [Streptococcus pneumoniae
          GA41317]
          Length = 213

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
          +  A R+   W       ++L G +G+GKS LA
Sbjct: 60 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 92


>gi|317129448|ref|YP_004095730.1| IstB domain protein ATP-binding protein [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474396|gb|ADU30999.1| IstB domain protein ATP-binding protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 267

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 25/126 (19%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSI-- 103
           E A+R ++S+     R ++L G  G+GKS L    A    DK     F  +   L ++  
Sbjct: 113 EIAIRYVNSFDHDNPRGLLLFGNYGTGKSHLSVSIAKKIVDKRNFVVFLPVPDYLANLKA 172

Query: 104 --------------LIDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTART 146
                          I     ++L+DI   D   + + +LF IIN   +     + T+  
Sbjct: 173 TYGNNSDTELRIINKIARVPLLILDDIGRVDPSGWVEEKLFQIIN--RRIGMHTIYTSNF 230

Query: 147 FPVSWG 152
            P    
Sbjct: 231 GPSELP 236


>gi|301799181|emb|CBW31694.1| DNA replication protein [Streptococcus pneumoniae OXC141]
          Length = 262

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +  A R+   W       ++L G +G+GKS LA
Sbjct: 109 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 141


>gi|239625342|ref|ZP_04668373.1| AAA ATPase central domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239519572|gb|EEQ59438.1| AAA ATPase central domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 442

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 20/136 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111
             +I  GP G GK+ LA I + K+ +   +              +A++ +S  +  +  V
Sbjct: 51  PSMIFWGPPGVGKTTLAGIIAHKTHAEFINFSAVTSGIKEIKEVMAQAENSRRMGIKTVV 110

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            +++I   +      F       +  S +L+ A T   S+ +    L SR     V  + 
Sbjct: 111 FVDEIHRFNKAQQDAFLPY---VEKGSIILIGATTENPSFEINGA-LLSR---CRVFVLQ 163

Query: 172 LPDDDFLEKVIVKMFA 187
               + L  ++ K   
Sbjct: 164 ALTQENLSCLLKKALK 179


>gi|256393040|ref|YP_003114604.1| IstB domain-containing protein ATP-binding protein [Catenulispora
           acidiphila DSM 44928]
 gi|256359266|gb|ACU72763.1| IstB domain protein ATP-binding protein [Catenulispora acidiphila
           DSM 44928]
          Length = 263

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 19/104 (18%)

Query: 67  VILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTR-------------- 108
           VIL GP G GK+     L ++   +  + +F+  ++ L  +                   
Sbjct: 104 VILFGPVGVGKTHVAQGLGHLAVRQGAAVQFAKTSRVLADLAGGHADRTWDKRVRELVRP 163

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQ-YDSSLLMTARTFPVSW 151
             ++L+D  +      Q   +   + +    SL++T+   P  W
Sbjct: 164 DVLILDDFAMRQMTAPQADDLYELVSERQGRSLIITSNRAPSDW 207


>gi|225855771|ref|YP_002737282.1| gp21 [Streptococcus pneumoniae P1031]
 gi|225724453|gb|ACO20305.1| gp21 [Streptococcus pneumoniae P1031]
          Length = 213

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
          +  A R+   W       ++L G +G+GKS LA
Sbjct: 60 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 92


>gi|198412134|ref|XP_002122137.1| PREDICTED: similar to valosin-containing protein, partial [Ciona
           intestinalis]
          Length = 256

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +  F                SN+ ++ +    +
Sbjct: 90  PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRRAFEEAEKN 149

Query: 107 TRKPVLLEDIDLLD 120
               + ++++D + 
Sbjct: 150 APAIIFIDELDAIA 163



 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     + ++     +  + E  D  
Sbjct: 184 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEMLTMWFGESEANVREVFDKA 240


>gi|183603743|ref|ZP_02719083.2| gp21 [Streptococcus pneumoniae CDC3059-06]
 gi|183575197|gb|EDT95725.1| gp21 [Streptococcus pneumoniae CDC3059-06]
          Length = 213

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
          +  A R+   W       ++L G +G+GKS LA
Sbjct: 60 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 92


>gi|172079635|ref|ZP_02709747.2| gp21 [Streptococcus pneumoniae CDC1873-00]
 gi|172042045|gb|EDT50091.1| gp21 [Streptococcus pneumoniae CDC1873-00]
          Length = 252

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +  A R+   W       ++L G +G+GKS LA
Sbjct: 99  LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 131


>gi|169833703|ref|YP_001693464.1| hypothetical protein SPH_0040 [Streptococcus pneumoniae
           Hungary19A-6]
 gi|307066668|ref|YP_003875634.1| DNA replication protein [Streptococcus pneumoniae AP200]
 gi|168996205|gb|ACA36817.1| gp21 [Streptococcus pneumoniae Hungary19A-6]
 gi|306408205|gb|ADM83632.1| DNA replication protein [Streptococcus phage PhiSpn_200]
          Length = 256

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +  A R+   W       ++L G +G+GKS LA
Sbjct: 103 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 135


>gi|168494849|ref|ZP_02718992.1| gp21 [Streptococcus pneumoniae CDC3059-06]
 gi|168494887|ref|ZP_02719030.1| gp21 [Streptococcus pneumoniae CDC3059-06]
 gi|168495011|ref|ZP_02719154.1| gp21 [Streptococcus pneumoniae CDC3059-06]
 gi|183575141|gb|EDT95669.1| gp21 [Streptococcus pneumoniae CDC3059-06]
 gi|183575214|gb|EDT95742.1| gp21 [Streptococcus pneumoniae CDC3059-06]
 gi|183575290|gb|EDT95818.1| gp21 [Streptococcus pneumoniae CDC3059-06]
          Length = 256

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +  A R+   W       ++L G +G+GKS LA
Sbjct: 103 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 135


>gi|168483725|ref|ZP_02708677.1| gp21 [Streptococcus pneumoniae CDC1873-00]
 gi|168484677|ref|ZP_02709629.1| gp21 [Streptococcus pneumoniae CDC1873-00]
 gi|172042150|gb|EDT50196.1| gp21 [Streptococcus pneumoniae CDC1873-00]
 gi|172042930|gb|EDT50976.1| gp21 [Streptococcus pneumoniae CDC1873-00]
          Length = 256

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +  A R+   W       ++L G +G+GKS LA
Sbjct: 103 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 135


>gi|148986131|ref|ZP_01819117.1| putative phage DNA replication protein [Streptococcus pneumoniae
           SP3-BS71]
 gi|147921845|gb|EDK72972.1| putative phage DNA replication protein [Streptococcus pneumoniae
           SP3-BS71]
          Length = 256

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +  A R+   W       ++L G +G+GKS LA
Sbjct: 103 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 135


>gi|148998970|ref|ZP_01826404.1| putative phage DNA replication protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|147755178|gb|EDK62231.1| putative phage DNA replication protein [Streptococcus pneumoniae
           SP11-BS70]
          Length = 256

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +  A R+   W       ++L G +G+GKS LA
Sbjct: 103 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 135


>gi|87200560|ref|YP_497817.1| recombination factor protein RarA [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87136241|gb|ABD26983.1| Recombination protein MgsA [Novosphingobium aromaticivorans DSM
           12444]
          Length = 452

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 22/142 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ +A + ++       +  A    S + D +K     +   L    T L
Sbjct: 72  MILWGPPGTGKTSIARLLAEAVGMRYVAISAVF--SGVADLKKAFAEAEAMALAGRRTLL 129

Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q            +L+      P  +       L SR   A V+ +  
Sbjct: 130 FVDEIHRFNRAQQDGFLPFVENGTVTLVGATTENPSFALNAA---LLSR---AQVLILHR 183

Query: 173 PDDDFLEKVIVKMFADRQIFID 194
            D   L  ++ +      + + 
Sbjct: 184 LDAAALGTLLDRAEDVTGLRLP 205


>gi|159111570|ref|XP_001706016.1| 26S protease regulatory subunit 6A [Giardia lamblia ATCC 50803]
 gi|157434108|gb|EDO78342.1| 26S protease regulatory subunit 6A [Giardia lamblia ATCC 50803]
          Length = 501

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           PS+ V+L G  G+GK+ LA   + ++  +     A  L  + I     +++E
Sbjct: 258 PSKGVLLYGVPGTGKTALARALAHEANCSFLQLTATQLVQLYIGDGSAMVIE 309


>gi|310816981|ref|YP_003964945.1| ATPase, AAA family protein [Ketogulonicigenium vulgare Y25]
 gi|308755716|gb|ADO43645.1| ATPase, AAA family protein [Ketogulonicigenium vulgare Y25]
          Length = 441

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 27/197 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ +A + +D++     + S I   +  +            +   +   T
Sbjct: 57  LILWGPPGVGKTTIARLLADQTSLAFVQISAIFTGVPDLKKVFEGA----RLRRANGQGT 112

Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N           +  + +L+  T              L SR +   + ++
Sbjct: 113 LLFVDEIHRFNKAQQDSFLPHMEDGTIVLVGATTENPSFELNAA---LLSRAQVLVLNRL 169

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +L D + L +   +  A R++ ++      +++  +        L++++  +A      +
Sbjct: 170 TLADLERLAQRAEQELA-RKLPLNGPARDALLEMADGDGRALLNLIEQV--MAWRVQQPL 226

Query: 231 TR-SLAAEVLKETQQCD 246
           T   L+  ++K   + D
Sbjct: 227 TTDDLSRRLMKRAVRYD 243


>gi|242371659|ref|ZP_04817233.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1]
 gi|242350608|gb|EES42209.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1]
          Length = 709

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 66/198 (33%), Gaps = 45/198 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       +++  PD    E ++      R   +D+ +    I QR       
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAIL--HVHARNKPLDETVDLKAISQRTP-GFSG 371

Query: 212 AEKLVDKMDNLALSRGMG 229
           A  L + ++  +L     
Sbjct: 372 A-DLENLLNEASLIAARE 388


>gi|197284594|ref|YP_002150466.1| recombination factor protein RarA [Proteus mirabilis HI4320]
 gi|194682081|emb|CAR41637.1| putative ATPase [Proteus mirabilis HI4320]
          Length = 449

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I     ++   R S +   +  I    R  + +   +      T
Sbjct: 53  MILWGPPGTGKTTLAEIIGRYAQADIERLSAVTSGIKEI----RAAIDIAHQNRNAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDK---KLAAYIVQ-RMERSLVFAEKLVDKM 219
               +  +E+V+ +   D       R I +     K+ A +V     RSL   E + D  
Sbjct: 163 RSLTETDIEQVLQQALDDTERGLGGRNIILPDNTRKMIAELVNGDARRSLNLLEMMADMA 222

Query: 220 DNLALSRGMGITRSLAAEV 238
           +  +      +T  L  E+
Sbjct: 223 EVDS-QGKRTLTAELLKEI 240


>gi|297584757|ref|YP_003700537.1| Holliday junction DNA helicase RuvB [Bacillus selenitireducens
           MLS10]
 gi|297143214|gb|ADH99971.1| Holliday junction DNA helicase RuvB [Bacillus selenitireducens
           MLS10]
          Length = 333

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLATIIANELGVQIRTTSGPAIERPGDLAAVLTALEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 114 -HRLNRAVEE 122


>gi|157363945|ref|YP_001470712.1| recombination factor protein RarA [Thermotoga lettingae TMO]
 gi|157314549|gb|ABV33648.1| AAA ATPase central domain protein [Thermotoga lettingae TMO]
          Length = 436

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 75/191 (39%), Gaps = 32/191 (16%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLLE 114
           +L GP G GKS +A +      +  F               + ++ +      +  + ++
Sbjct: 48  VLYGPPGCGKSSIAELIRKHVDAEFFFFSGALHGANDIKQAMNRAQEMKRYGKQTIIFID 107

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-P 173
           +I  L+     L  +++ + +  +  L+ A T   S+ +  P L SR     V+ +    
Sbjct: 108 EIHRLNKAQQDL--LLSKV-EDGTITLIGATTENPSFEIIPP-LLSR---CRVIFLKPLS 160

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           +++ ++ +       R I +D+K+A+Y +   +       ++       AL+     T  
Sbjct: 161 NEELIKIM------KRAIIVDEKIASYEINVTDEVFQAIAQMSQGDARFALN-----TLE 209

Query: 234 LAAEVLKETQQ 244
           +A E  +   Q
Sbjct: 210 IAIEAARGMNQ 220


>gi|119872050|ref|YP_930057.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum islandicum
           DSM 4184]
 gi|119673458|gb|ABL87714.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum islandicum DSM
           4184]
          Length = 738

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + ++L+GP G+GK+ LA   ++++ +              +      L  I  + +  
Sbjct: 210 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 269

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 270 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDAIDPA 329

Query: 155 L 155
           L
Sbjct: 330 L 330



 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G GK+  A   + +S +   +     L
Sbjct: 498 PPKGILLFGPPGVGKTLFAKAVATESGANFIAVRGPEL 535


>gi|146305021|ref|YP_001192337.1| proteasome-activating nucleotidase [Metallosphaera sedula DSM 5348]
 gi|145703271|gb|ABP96413.1| Proteasome-activating nucleotidase [Metallosphaera sedula DSM 5348]
          Length = 379

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + ++L GP G+GK+ LA   + +S ++    +A       +     V+ +  +L 
Sbjct: 154 PPKGILLYGPPGTGKTMLAKAVATESNASFIHVVASEFAQKFVGEGARVVRDVFELA 210


>gi|26341102|dbj|BAC34213.1| unnamed protein product [Mus musculus]
          Length = 660

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQD 334


>gi|83766813|dbj|BAE56953.1| unnamed protein product [Aspergillus oryzae]
          Length = 491

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 277 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 336

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 337 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 394

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++    ++      R++ +D  +
Sbjct: 395 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVDDSV 430


>gi|28378253|ref|NP_785145.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1]
 gi|28271088|emb|CAD63993.1| chromosome segregation helicase (putative) [Lactobacillus plantarum
           WCFS1]
          Length = 458

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 22/155 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLD-- 120
             +I  GP G GK+ LA I + +++S    FS +   +  I     +     D       
Sbjct: 52  PSLIFWGPPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIV 111

Query: 121 -FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
             ++    H  N           +  S  L+ A T   S+ +    L SR K   V+K  
Sbjct: 112 FIDEI---HRFNKAQQDAFLPYVERGSITLIGATTENPSFEINAA-LLSRCK-VLVLKAL 166

Query: 172 LPD--DDFLEKVIV--KMFADRQIFIDKKLAAYIV 202
            PD  +  L+  +   K F D +I +       I 
Sbjct: 167 TPDALEAVLQGALQNPKGFPDLEITMQPDTLRLIA 201


>gi|329889161|ref|ZP_08267504.1| ATPase family associated with various cellular activities AAA
           family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844462|gb|EGF94026.1| ATPase family associated with various cellular activities AAA
           family protein [Brevundimonas diminuta ATCC 11568]
          Length = 434

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 37/188 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G+GK+ +A + +  +     S  A    S + D +K      +       T
Sbjct: 52  GSMILWGPPGTGKTTIARLLAKAAGYEYQSISAVF--SGVADLKKAFEAARMRRAAGQQT 109

Query: 125 QLF----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q            +L+      P          L SR   + V  +
Sbjct: 110 LLFVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGA---LLSR---SQVYVL 163

Query: 171 SLP-----------DDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVD 217
                          +  + K++      RQ  + +      Y++  M   L      V+
Sbjct: 164 KRLDDASLDLLLDRAEALMGKLLPLTPEARQAMLALADGDGRYLLT-MSEVLFDLTD-VE 221

Query: 218 KMDNLALS 225
            +D  AL+
Sbjct: 222 PLDVQALA 229


>gi|262182974|ref|ZP_06042395.1| Putative transposase [Corynebacterium aurimucosum ATCC 700975]
          Length = 169

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 30/150 (20%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------- 104
           +W   P+ + IL  P+G+GK+ +A      +    +S     L  ++             
Sbjct: 15  NWRENPTNIHILA-PTGTGKTYIACAIGIAACKAGYSVAYYRLGQLVDMLAVFSPTDQNY 73

Query: 105 ------IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLP 156
                 +     ++++D   +  N      +   I   D  L  L+++++    W   LP
Sbjct: 74  LDKMRKLINVDVLIIDDFMTISINQRGQEDLTKIIFDRDGRLPTLISSQSAAAYWVETLP 133

Query: 157 D------LCSRLKAATVVKISLPDDDFLEK 180
           D      L SRL     + I   D D  + 
Sbjct: 134 DRVGADSLVSRLNNGHRIHIG--DFDMRKA 161


>gi|262068258|ref|ZP_06027870.1| holliday junction DNA helicase RuvB [Fusobacterium periodonticum
           ATCC 33693]
 gi|291377996|gb|EFE85514.1| holliday junction DNA helicase RuvB [Fusobacterium periodonticum
           ATCC 33693]
          Length = 338

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 41/183 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + +++ ++         L+           LE+ D+L  ++   
Sbjct: 55  ILLYGPPGLGKTTLAGVIANEMQANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINS--------IHQYDSSLLMTARTFPV-SWGVCLP-----------DLCS---RLK 163
            H +N+          +     ++  +     S  + LP            L S   R +
Sbjct: 113 -HRLNNTVEEILYPAMEDGELDIIIGKGPSAKSIRIELPAFTLIGATTRAGLLSAPLRDR 171

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209
                K+   + D ++ +I++      + I  +              +A  +++R+ R  
Sbjct: 172 FGVSHKMEYYNIDEIKAIIIRGAKILGVKISDEGAIEISKRSRGTPRIANRLLKRV-RDY 230

Query: 210 VFA 212
              
Sbjct: 231 CEI 233


>gi|189218507|ref|YP_001939148.1| Holliday junction resolvasome, helicase subunit RuvB
           [Methylacidiphilum infernorum V4]
 gi|189185365|gb|ACD82550.1| Holliday junction resolvasome, helicase subunit RuvB
           [Methylacidiphilum infernorum V4]
          Length = 350

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   ++  GP G GK+ LA+I S +  ++       +LD           LE  D+L  +
Sbjct: 64  PLPHLLFSGPPGLGKTTLAHILSKEMNASLKITSGPALDKAANLAGILTSLESFDVLFID 123

Query: 123 DT 124
           + 
Sbjct: 124 EI 125


>gi|182413522|ref|YP_001818588.1| ATPase central domain-containing protein [Opitutus terrae PB90-1]
 gi|177840736|gb|ACB74988.1| AAA ATPase central domain protein [Opitutus terrae PB90-1]
          Length = 448

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +I  GP G GK+ +A   + ++ S   R + +  ++  +         L     + F 
Sbjct: 64  GSLIFYGPPGCGKTSIAEAIAQETNSRFVRVNAVMSNVAELREILHSARRLPQASTILFI 123

Query: 123 DTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           D    H  N           +  +  L+ A T    + V  P L SR   + + ++    
Sbjct: 124 DE--LHRFNKSQQDLLLPDVEEGTVRLIGATTHNPGFYVNPP-LLSR---SHLFRLEPLS 177

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
              +  V+ K  AD       R++  D K+ A +    +  L  A   ++ +  L L  G
Sbjct: 178 PAAVTGVLKKALADEERGLGARKVTADDKVLADLAVLCDGDLRRALNALEVL-VLGLPEG 236

Query: 228 MGIT 231
             IT
Sbjct: 237 GVIT 240


>gi|170049711|ref|XP_001858122.1| werner helicase interacting protein [Culex quinquefasciatus]
 gi|167871474|gb|EDS34857.1| werner helicase interacting protein [Culex quinquefasciatus]
          Length = 529

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 27/153 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSD---KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
             +I  GP G GK+ LA+I +    K  + RF  ++ ++  +  D ++ V +   +L   
Sbjct: 166 PSMIFWGPPGCGKTTLAHIIAAHCKKHENMRFVKLSATMSGVN-DVKEAVKVAKNELKFK 224

Query: 122 NDTQLF----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
             T LF    H  N + Q                 + LP + S            P    
Sbjct: 225 RKTILFMDEIHRFNKLQQD----------------IFLPHVESGTVTLLGATTENPSFSL 268

Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              ++ +    R I ++K     +++ +ER+L 
Sbjct: 269 NSALLSRC---RVIVLEKLAVEPMMKILERALP 298


>gi|6273572|emb|CAB60143.1| spastin protein orthologue [Mus musculus]
          Length = 504

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 262 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 311


>gi|116670830|ref|YP_831763.1| recombination factor protein RarA [Arthrobacter sp. FB24]
 gi|116610939|gb|ABK03663.1| Recombination protein MgsA [Arthrobacter sp. FB24]
          Length = 474

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 23/173 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA++ +          S I   +  +       +   D+       T
Sbjct: 84  LILWGPPGTGKTTLAHVIAKGPGRKFVELSAITAGVKDVRRVMDDALTARDLYKTT---T 140

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +    +L+ A T   S+ V  P     L  + ++ +  
Sbjct: 141 VLFLDEIHRFNKAQQDALLPGVENRWVVLVAATTENPSFSVVSPL----LSRSLLLTLRP 196

Query: 173 PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223
             D  +E ++ +  AD R +    +L+   +  + R S   A + +  ++  A
Sbjct: 197 LTDADIEGLVQRAVADPRGLNGKVQLSEEALAHLVRLSGGDARRALTALEAAA 249


>gi|313238059|emb|CBY13178.1| unnamed protein product [Oikopleura dioica]
          Length = 432

 Score = 42.4 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|319761904|ref|YP_004125841.1| aaa atpase central domain protein [Alicycliphilus denitrificans BC]
 gi|317116465|gb|ADU98953.1| AAA ATPase central domain protein [Alicycliphilus denitrificans BC]
          Length = 437

 Score = 42.4 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 24/194 (12%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112
           IL GP G GK+ +A + ++   +   S                +A+S    L+  R  V 
Sbjct: 49  ILWGPPGVGKTTIARLMAEAFDAQFISISAVLGGVKDIRDAVQLAESAAGGLMPQRTIVF 108

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR   A V  +  
Sbjct: 109 VDEVHRFNKSQQDAFLPH---VESGLFTFVGATTENPSFEVNSA-LLSR---AAVYVLQP 161

Query: 173 P-DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-I 230
              DD    V+          I+ +    ++   +         ++ +   A    +  I
Sbjct: 162 LTSDDLKRIVVRAQDIQALPAIENEALERLIAYADGDARRLLNTLETLSVTAEQAKVETI 221

Query: 231 TRSLAAEVLKETQQ 244
           T +   +VL E  +
Sbjct: 222 TDAWLLQVLGERMR 235


>gi|297379642|gb|ADI34529.1| recombination factor protein RarA [Helicobacter pylori v225d]
          Length = 391

 Score = 42.4 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIAHALERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              L+ +  K     +  I+     Y++     S   A  L++ +D  A
Sbjct: 151 KSDLDNLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA 196


>gi|258563624|ref|XP_002582557.1| 26S protease regulatory subunit 6A-B [Uncinocarpus reesii 1704]
 gi|237908064|gb|EEP82465.1| 26S protease regulatory subunit 6A-B [Uncinocarpus reesii 1704]
          Length = 462

 Score = 42.4 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 67/199 (33%), Gaps = 53/199 (26%)

Query: 45  VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
           V    +Q   L+++  WP              P   ++  GP G+GK+ LA   + ++ +
Sbjct: 210 VGGLNKQIEELVEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTDA 268

Query: 91  TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122
           T        L  + I     ++                ++++D +               
Sbjct: 269 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 328

Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178
              +  ++N        D   ++ A          L  L S RL     ++  LP+++  
Sbjct: 329 QRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 384

Query: 179 EKVIVKMFADRQIFIDKKL 197
            +++      R++ +D+ +
Sbjct: 385 AQIL--KIHSRKMTVDENV 401


>gi|302391510|ref|YP_003827330.1| recombination protein MgsA [Acetohalobium arabaticum DSM 5501]
 gi|302203587|gb|ADL12265.1| Recombination protein MgsA [Acetohalobium arabaticum DSM 5501]
          Length = 439

 Score = 42.4 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 80/202 (39%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI------------LIDTRKPVL 112
           +IL GP G+GK+ LA I ++   S   R + +   +  I            +  T+  + 
Sbjct: 55  LILYGPPGTGKTTLAMIIANTTSSEFERLNAVTSGIKDIREIIKQAKERRRMYQTKTILF 114

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I   + +    L        +    +L+ A T    + V  P L SR   + V ++ 
Sbjct: 115 IDEIHRFNKSQQDALL----PAVEKGIIILIGATTENPYFEVNSP-LVSR---SRVFELK 166

Query: 172 LPDDDFLEKVIVKMFADRQIFIDK---KLAAYIVQRM-ERSLVFAEKLVDKMDNLALSRG 227
               D L+++++K   D +  +      +    ++ + E +   A   ++ ++   L+  
Sbjct: 167 PLTKDNLKQILLKALDDTEQGLGDYKVDVTQEALEHIAEMANGDARIALNALELAVLTTP 226

Query: 228 ------MGITRSLAAEVLKETQ 243
                   IT  +A E +++  
Sbjct: 227 ENGTGIKEITLKVAEESIQQRS 248


>gi|301300882|ref|ZP_07207054.1| recombination factor protein RarA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851481|gb|EFK79193.1| recombination factor protein RarA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 423

 Score = 42.4 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIA--------KSLDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A        + ++         +LL++I 
Sbjct: 41  MILYGPPGTGKTSIASAIAGSTKYAFRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIH 100

Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L          H+     +    +L+ A T      +  P + SR     + ++   ++
Sbjct: 101 RLTKPKQDFLLPHL-----EDGHIILIGATTENPYISIN-PAIRSR---TQIFEVHPLNE 151

Query: 176 DFLEKVIVKMFADR 189
           D + + I +   D+
Sbjct: 152 DDIIQAINRAITDK 165


>gi|302660686|ref|XP_003022019.1| hypothetical protein TRV_03836 [Trichophyton verrucosum HKI 0517]
 gi|291185945|gb|EFE41401.1| hypothetical protein TRV_03836 [Trichophyton verrucosum HKI 0517]
          Length = 461

 Score = 42.4 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%)

Query: 45  VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
           V    +Q   L+++  WP              P   ++  GP G+GK+ LA   + ++ +
Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267

Query: 91  TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122
           T        L  + I     ++                ++++D +               
Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 327

Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178
              +  ++N        D   ++ A          L  L S RL     ++  LP+++  
Sbjct: 328 QRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 383

Query: 179 EKVIVKMFADRQIFIDKKL 197
            +++      R++ +D K+
Sbjct: 384 AQIL--RIHSRKMTVDDKV 400


>gi|261405433|ref|YP_003241674.1| AAA ATPase central domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281896|gb|ACX63867.1| AAA ATPase central domain protein [Paenibacillus sp. Y412MC10]
          Length = 435

 Score = 42.4 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 35/182 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDID---LLDF 121
           ++L GP G GK+ LA+I S +++    R + +  ++  +        ++E       L  
Sbjct: 54  ILLYGPPGCGKTTLAHIISQQTKGHFVRLNAVEATVKDVRE------VIEQAQSNRSLYG 107

Query: 122 NDTQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
             T LF    H  NS  Q        + +++    T    +      L SR   +T+ ++
Sbjct: 108 TKTILFLDEVHRFNSSRQDALLPAVENGTIIFIGATTENPFHYVNGALMSR---STLFQL 164

Query: 171 SLPDDDFLEKVIVKMF--ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                D     + +     D+      +  D++   +I            + ++ ++  A
Sbjct: 165 QPLTKDHSMIAMRRALIDQDKGLGFMDLKADEEALEHIAAMAN---GDIRRALNALELAA 221

Query: 224 LS 225
           ++
Sbjct: 222 MT 223


>gi|332969682|gb|EGK08698.1| cell division protein FtsH [Desmospora sp. 8437]
          Length = 455

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 75/216 (34%), Gaps = 49/216 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           ++L GP G GK+ +A   + +  +   S                N+ +  ++        
Sbjct: 216 ILLYGPPGCGKTFIARATAGECNAHFISLDIHRILDMYIGQSEKNLHELFETARRHAPTI 275

Query: 111 VLLEDIDLLDF--NDTQLFH-------IINSIH----QYDSSLLMTARTFP--VSWGVCL 155
           + ++++D +       Q  H       ++N +          L++ A   P  V   +  
Sbjct: 276 IFIDELDAIGGARQQGQSAHSRALTNQLLNELDGIHSDNRDILVLGATNTPWFVDSALRR 335

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMER-SLVFA 212
           P    R      V    PD +   +++     ++      +   Y  + ++ +R S    
Sbjct: 336 P---GRFDRVLFVA--PPDLEARVEILHIHLKEK----PVEEIDYVKVAKKTDRFSGADL 386

Query: 213 EKLVDKMDNLALS------RGMGITRSLAAEVLKET 242
             +VD   ++A+       +   IT S+  + +KE 
Sbjct: 387 RAVVDTAADMAIREAMKTGQKRPITTSMLVQAVKEV 422


>gi|302688501|ref|XP_003033930.1| hypothetical protein SCHCODRAFT_81752 [Schizophyllum commune H4-8]
 gi|300107625|gb|EFI99027.1| hypothetical protein SCHCODRAFT_81752 [Schizophyllum commune H4-8]
          Length = 426

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   + ++++        SL  + I     ++          
Sbjct: 206 PPKGALMYGPPGTGKTLLARACAAQTQACYLKLAGPSLVQMFIGDGAKLVRDAFALAKEK 265

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      +   ++ A       
Sbjct: 266 APAIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRIDIL 325

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++  LP++    +++      R++ +   +
Sbjct: 326 DPAL--LRSGRLD--RKIEFPLPNETARSRILE--IHSRKMSVSDDV 366


>gi|123911070|sp|Q05AS3|SPAST_XENTR RecName: Full=Spastin
 gi|116284104|gb|AAI23974.1| spg4 protein [Xenopus (Silurana) tropicalis]
          Length = 603

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 361 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 410


>gi|18310929|ref|NP_562863.1| Holliday junction DNA helicase B [Clostridium perfringens str. 13]
 gi|20140041|sp|Q8XJ14|RUVB_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|18145611|dbj|BAB81653.1| holliday junction DNA helicase [Clostridium perfringens str. 13]
          Length = 346

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 41/184 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           VIL GP G GK+ LANI +++           +++           L   D+L  ++   
Sbjct: 56  VILYGPPGLGKTTLANIIANEMGGNLKITSGPAIERAGDLAAILTTLNTNDVLFIDEI-- 113

Query: 127 FHIINSIHQY------DSSLL--MTAR-TFPVSWGVCLPD------------LCS--RLK 163
            H +N   +       +  +L  +  +     S  + LP             L S  R +
Sbjct: 114 -HRLNRSVEEILYPAMEDYVLDIIIGKGAASKSIRLDLPKFTLIGATTRIGMLSSPLRDR 172

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209
              +  +    D+ L+++I++        I ++              +A  +++R+ R  
Sbjct: 173 LGVLCSMEYYTDEQLKEIIIRSAEILGCHITEEGAFEIAKRSRGTPRIANRLLKRV-RDF 231

Query: 210 VFAE 213
               
Sbjct: 232 AEVL 235


>gi|219667427|ref|YP_002457862.1| ABC transporter [Desulfitobacterium hafniense DCB-2]
 gi|219537687|gb|ACL19426.1| ABC transporter related [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 16/61 (26%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            + + L+GPSGSGKS L +I                L ++   T   V ++DID+   ++
Sbjct: 33  GQFLALLGPSGSGKSTLLSI----------------LGALNPPTEGKVFIDDIDIYGLDE 76

Query: 124 T 124
            
Sbjct: 77  E 77


>gi|327293497|ref|XP_003231445.1| hypothetical protein TERG_08231 [Trichophyton rubrum CBS 118892]
 gi|326466561|gb|EGD92014.1| hypothetical protein TERG_08231 [Trichophyton rubrum CBS 118892]
          Length = 604

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 39/115 (33%), Gaps = 25/115 (21%)

Query: 63  PSRVVILV-GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVL 112
           P R   L  GP G GK+ L    +       +     S +            +  R  VL
Sbjct: 298 PYRRGYLFSGPPGCGKTSLCFAVAGLLGLKIYVANLSSPNLTEEGLASLFATLPRRCIVL 357

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           LEDID      ++L        Q  +     +   P +         SRLKA+TV
Sbjct: 358 LEDIDTAGITKSRL--------QAGAP----SSISPAAQNAST---QSRLKASTV 397


>gi|296224143|ref|XP_002757920.1| PREDICTED: spastin isoform 2 [Callithrix jacchus]
          Length = 584

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 342 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 391


>gi|289450847|ref|YP_003475226.1| Holliday junction DNA helicase RuvB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185394|gb|ADC91819.1| Holliday junction DNA helicase RuvB [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 372

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 76/202 (37%), Gaps = 31/202 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I + + +S        +++           L+  D+L  ++   
Sbjct: 91  VLLYGPPGLGKTTLAGIIAGEMKSNLRITSGPAIEKAGDLAAILTNLQPRDVLFIDEI-- 148

Query: 127 FHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLC--------------S---R 161
            H +N           +     LM  +  P +  V L DL               S   R
Sbjct: 149 -HRLNHSVEEILYPAMEDRVLDLMIGK-GPSARSVRL-DLAPFTLVGATTKAGNLSAPLR 205

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220
            +   + ++ L D   L  ++ +      I I ++    + +R   +   A +L+ ++ D
Sbjct: 206 DRFGVINRLELYDVKDLAAILKRDAEIMHIGITEEAVTCLAERSRGTPRIAIRLLRRLRD 265

Query: 221 NLALSRGMGITRSLAAEVLKET 242
              ++    +TR++A   LK  
Sbjct: 266 FAQVASTSTVTRTIAENGLKAL 287


>gi|253701023|ref|YP_003022212.1| IstB domain protein ATP-binding protein [Geobacter sp. M21]
 gi|253701486|ref|YP_003022675.1| IstB domain protein ATP-binding protein [Geobacter sp. M21]
 gi|253702650|ref|YP_003023839.1| IstB domain protein ATP-binding protein [Geobacter sp. M21]
 gi|251775873|gb|ACT18454.1| IstB domain protein ATP-binding protein [Geobacter sp. M21]
 gi|251776336|gb|ACT18917.1| IstB domain protein ATP-binding protein [Geobacter sp. M21]
 gi|251777500|gb|ACT20081.1| IstB domain protein ATP-binding protein [Geobacter sp. M21]
          Length = 245

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 23/143 (16%)

Query: 32  FPRCLGISRDDLLVHSAIEQAV-RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88
           FP    +   +       E  + RL D         VI+VG +G+GK+ LA   + +S  
Sbjct: 66  FPVDKDLDSFEFSDSPVNEMQLKRLYDGGFLGDHTNVIMVGGTGTGKTHLAISIARQSIR 125

Query: 89  -----RSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND-----------TQLFHI 129
                R     ++   L+   +D R   L E +   DL+  ++             LFH+
Sbjct: 126 NDRKARFFNVLDLVNQLEQEKLDGRGGKLAEQLARHDLVILDELGYLPFSKNGGQLLFHL 185

Query: 130 INSIHQYDSSLLMTARTFPVSWG 152
           I+ +++  +SL++T       W 
Sbjct: 186 ISKLYER-TSLIITTNLTFGEWP 207


>gi|148264882|ref|YP_001231588.1| AAA family ATPase, CDC48 subfamily protein [Geobacter
           uraniireducens Rf4]
 gi|146398382|gb|ABQ27015.1| AAA family ATPase, CDC48 subfamily [Geobacter uraniireducens Rf4]
          Length = 701

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 61/168 (36%), Gaps = 43/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + ++L GP G+GK+ +A   ++++ ++ +S     +                +    +
Sbjct: 208 PPKGLLLHGPPGTGKTLIARAVANETNASFYSVSGPEIIHKFYGESEAKLRNLFEEARKN 267

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + L++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 268 APSIIFLDEIDAIAPKREQVTGEVEKRVVAQLLALMDGLAERGQVIVIGATNIPNALDQA 327

Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L      D          ++I +PD +   +++      R + +   +
Sbjct: 328 LRRPGRFD--------RELEIGIPDVNGRMEILD--IHTRGMPLTDDV 365


>gi|124266314|ref|YP_001020318.1| recombination factor protein RarA [Methylibium petroleiphilum PM1]
 gi|124259089|gb|ABM94083.1| Recombination protein MgsA [Methylibium petroleiphilum PM1]
          Length = 443

 Score = 42.4 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 35/189 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA + +    +   +              + ++  +  +  R  V +
Sbjct: 58  MILWGPPGTGKTTLARLMAHAFDAQFIAISAVLGGVKDIRDAVEQAQVAQGMGRRTIVFV 117

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   +      F       +      + A T   S+ V    L SR   ATV  +   
Sbjct: 118 DEVHRFNKAQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---ATVHVLRPL 170

Query: 174 DDDFLEKVIVK------------MFADRQIFIDKKLAAYIVQ---RMERSLVFAEKLVDK 218
           DD  L +++ +                R I      A  ++     + R      ++ + 
Sbjct: 171 DDSELAELLERGRALLNGSPLSDAARTRLIAYADGDARRLLNTYENIARMAGAVLEIDEA 230

Query: 219 MDNLALSRG 227
               AL   
Sbjct: 231 FLEQALGEQ 239


>gi|332227159|ref|XP_003262759.1| PREDICTED: spastin isoform 2 [Nomascus leucogenys]
          Length = 584

 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 342 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 391


>gi|329926789|ref|ZP_08281197.1| ATPase, AAA family protein [Paenibacillus sp. HGF5]
 gi|328938989|gb|EGG35357.1| ATPase, AAA family protein [Paenibacillus sp. HGF5]
          Length = 435

 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 67/182 (36%), Gaps = 35/182 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDID---LLDF 121
           ++L GP G GK+ LA+I S +++    R + +  S+  +        ++E       L  
Sbjct: 54  ILLYGPPGCGKTTLAHIISQQTKGHFVRLNAVEASVKDVRE------VIEQAQSNRSLYG 107

Query: 122 NDTQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
             T LF    H  NS  Q        + +++    T    +      L SR   +T+ ++
Sbjct: 108 TKTILFLDEVHRFNSSRQDALLPAVENGTIIFIGATTENPFHYVNGALMSR---STLFQL 164

Query: 171 SLPDDDFLEKVIVKMF--ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                D     + +     D+      +  D++   +I            + ++ ++  A
Sbjct: 165 QPLTKDHSMIAMRRALTDQDKGLGFMDLKADEEALEHIAAMAN---GDIRRALNALELAA 221

Query: 224 LS 225
           ++
Sbjct: 222 MT 223


>gi|315924088|ref|ZP_07920314.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622490|gb|EFV02445.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 317

 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136
           KS LA                 SLD   ID    ++ +D+D   +ND  L++++     +
Sbjct: 48  KSHLATAV-----GFAIDEEKLSLDDKPIDAFADIIPDDVDP-RWNDVTLYNLMTMTSGH 101

Query: 137 DSSLLMTART 146
               LMT+  
Sbjct: 102 GEPFLMTSDR 111


>gi|302499390|ref|XP_003011691.1| mitochondrial chaperone ATPase (Bcs1), putative [Arthroderma
           benhamiae CBS 112371]
 gi|291175243|gb|EFE31051.1| mitochondrial chaperone ATPase (Bcs1), putative [Arthroderma
           benhamiae CBS 112371]
          Length = 601

 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 39/115 (33%), Gaps = 25/115 (21%)

Query: 63  PSRVVILV-GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVL 112
           P R   L  GP G GK+ L    +       +     S +            +  R  VL
Sbjct: 295 PYRRGYLFSGPPGCGKTSLCFAVAGLLGLKIYVANLSSPNLTEEGLASLFATLPRRCIVL 354

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           LEDID      ++L        Q  +     +   P +         SRLKA+TV
Sbjct: 355 LEDIDTAGITKSRL--------QAGAP----SSISPAAQNAST---QSRLKASTV 394


>gi|256078592|ref|XP_002575579.1| 26S protease regulatory subunit 6a [Schistosoma mansoni]
 gi|238660820|emb|CAZ31812.1| 26S protease regulatory subunit 6a, putative [Schistosoma mansoni]
          Length = 365

 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +++ST        L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259


>gi|53804168|ref|YP_114220.1| recombination factor protein RarA [Methylococcus capsulatus str.
           Bath]
 gi|53757929|gb|AAU92220.1| ATPase, AAA family [Methylococcus capsulatus str. Bath]
          Length = 435

 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 70/194 (36%), Gaps = 27/194 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +I  GP G+GK+ LA + +  + +                  +A+++       R  + +
Sbjct: 46  MIFWGPPGTGKTTLARLVARHADAEFLPVSAVLSGVKEIREALARAVQFKAAGRRAILFV 105

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +  +   + A T   S+ V    L SR   A V  +   
Sbjct: 106 DEVHRFNKSQQDAFLAH---VEDGTVSFIGATTENPSFEVNSA-LLSR---ARVYVLKAL 158

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            +  L  VI +  +D       R + +   +    V+  +        L++   +L  + 
Sbjct: 159 TEADLLGVIDRALSDAERGLGGRGLNMSDPVRMAYVRAADGDARRLLNLLEITADLLDAG 218

Query: 227 GMGITRSLAAEVLK 240
              ++  +A +VL 
Sbjct: 219 QTVVSEEVARQVLA 232


>gi|261415680|ref|YP_003249363.1| AAA ATPase central domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372136|gb|ACX74881.1| AAA ATPase central domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326489|gb|ADL25690.1| ATPase, AAA family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 431

 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 30/195 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS--RSTRFSNIA---KSLDSILIDTR--------KPV 111
             +I  GP G GK+ LA++    +  R    S +A   K +  +L D R          +
Sbjct: 40  PSMIFWGPPGCGKTSLAHVIRQHTKKRFVALSAVASGVKEVKEVLADARQMKKAFMDTIL 99

Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            +++I   +      L        +  +  L+ A T    + V    L SR +      +
Sbjct: 100 FIDEIHRFNKGQQDALL----GAVEDGTVTLIGATTENPGFEVNGA-LLSRCQLILFAPL 154

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           S  D   L  +I     D  R +      ++  +   ++ + E    F    ++ +    
Sbjct: 155 SKED---LRTLIFSALRDHPRGLQLKDVEVEDSVVDKLIAQSEGDARFLLNQLEWIGKN- 210

Query: 224 LSRGMGITRSLAAEV 238
           L     I   L  E 
Sbjct: 211 LGDNKKIDEKLLEEF 225


>gi|194037953|ref|XP_001924550.1| PREDICTED: ATPase WRNIP1 [Sus scrofa]
          Length = 503

 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+            ++   + K   + D+     N+ 
Sbjct: 100 PSLILWGPPGCGKTTLAHIIANNSKKHSI-----RFVTLSATSAKTTDVRDVIKQAQNEK 154

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 155 SFFKRKTILFIDEIHRFNKSQQD 177


>gi|281485591|ref|NP_001102172.2| spastin [Rattus norvegicus]
 gi|226694298|sp|B2RYN7|SPAST_RAT RecName: Full=Spastin
 gi|187469086|gb|AAI66846.1| Spast protein [Rattus norvegicus]
          Length = 581

 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 339 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 388


>gi|73980101|ref|XP_862831.1| PREDICTED: similar to spastin isoform 2 isoform 2 [Canis
           familiaris]
          Length = 592

 Score = 42.4 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 350 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 399


>gi|326514984|dbj|BAJ99853.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 826

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G+GK+ LA   + +S +                    N+ K        
Sbjct: 269 PPKGILLYGPPGTGKTLLARAIAAESGANFVVINGPEIMSMMAGQSEDNLRKVFAQAEAQ 328

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +  N              QL  +++ +      +++ A   P S    
Sbjct: 329 APSIIFMDEIDAIAPNREKTRGEVERRVVSQLLTLMDGLCPRAQVMVIGATNRPNSIDPA 388

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+    +++     D  + +   +
Sbjct: 389 LR----RFGRFDKEIDIGVPDEVGRLEILRIHSKD--MPLSDDV 426



 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           PSR V+L GP G GK+ LA   + + ++   S     L
Sbjct: 543 PSRGVLLYGPPGCGKTLLAKAIARECKANFISVKGPEL 580


>gi|323346540|gb|EGA80827.1| Rpt5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 382

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T     A  L  + I     ++                +
Sbjct: 169 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFI 228

Query: 114 EDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N +      D   ++ A          L  L
Sbjct: 229 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPAL--L 286

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP +D   +++      R++  D  +
Sbjct: 287 RSGRLD--RKIEFPLPSEDSRAQILQ--IHSRKMTTDDDI 322


>gi|297537214|ref|YP_003672983.1| IstB domain-containing protein ATP-binding protein [Methylotenera
           sp. 301]
 gi|297538441|ref|YP_003674210.1| IstB domain-containing protein ATP-binding protein [Methylotenera
           sp. 301]
 gi|297539655|ref|YP_003675424.1| IstB domain-containing protein ATP-binding protein [Methylotenera
           sp. 301]
 gi|297539802|ref|YP_003675571.1| IstB domain-containing protein ATP-binding protein [Methylotenera
           sp. 301]
 gi|297256561|gb|ADI28406.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301]
 gi|297257788|gb|ADI29633.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301]
 gi|297259002|gb|ADI30847.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301]
 gi|297259149|gb|ADI30994.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301]
          Length = 241

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 21/113 (18%)

Query: 65  RVVILVGPSGSGKSCLANIW----SDKSRSTRFSNIAKSLDSILID-------------T 107
           R +I VG  G+GK+ LA+      + K    RF N+   ++ + +D              
Sbjct: 99  RNIIFVGGPGTGKTHLASAIGVDAATKGARVRFYNVLDLVNQLELDKDQQKHKLAQQLAK 158

Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
              V+L+++  L F+      LFH+I+ +H+  +S+++T       WG    D
Sbjct: 159 YDLVILDELGYLPFSQKGGALLFHLISQLHE-QTSIIITTNLAFSEWGKLFAD 210


>gi|295706728|ref|YP_003599803.1| holliday junction DNA helicase RuvB [Bacillus megaterium DSM 319]
 gi|294804387|gb|ADF41453.1| holliday junction DNA helicase RuvB [Bacillus megaterium DSM 319]
          Length = 333

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 29/202 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLATIIANEMGVQIRTTSGPAIERPGDLAAVLTSLEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD---------------LCS--RL 162
            H +N   +        D  L +     P +  V L D               L S  R 
Sbjct: 114 -HRLNRSVEEVLYPAMEDFCLDIVIGKGPSARSVRL-DLPPFTLVGATTRAGLLSSPLRD 171

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DN 221
           +   + ++    ++ L  ++ +  A   + ID+K    + +R   +   A +L+ ++ D 
Sbjct: 172 RFGVLSRLEYYQEEDLASIVERTAAILDVEIDEKATFEMARRARGTPRIANRLLRRVRDF 231

Query: 222 LALSRGMGITRSLAAEVLKETQ 243
             +     IT  LA E L+  Q
Sbjct: 232 AQVKGDGAITERLANEALEMLQ 253


>gi|226694318|sp|Q719N1|SPAST_PIG RecName: Full=Spastin
          Length = 613

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 420


>gi|222629017|gb|EEE61149.1| hypothetical protein OsJ_15108 [Oryza sativa Japonica Group]
          Length = 588

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 36/203 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 335 RGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEVFVGRGAARVRDLFKEAKEAAP 394

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        ++M A   P +    L 
Sbjct: 395 SIIFIDELDAVGGSRGRSFNDERDQTLNQLLTEMDGFDSDMKVIVMAATNRPKALDPALC 454

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V + +PD +    ++     D  +  D ++   +V  +   LV A  
Sbjct: 455 RPGRFSR-----KVLVGVPDLEGRRNILAVHLRDVPLEEDPEIICDLVASLTPGLVGA-D 508

Query: 215 LVDKMDNLALSRGMGITRSLAAE 237
           L + ++  AL        ++A E
Sbjct: 509 LANIVNEAALLAARRGGNTVARE 531


>gi|194220831|ref|XP_001918126.1| PREDICTED: similar to spastin [Equus caballus]
          Length = 616

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 374 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 423


>gi|195427309|ref|XP_002061719.1| GK17038 [Drosophila willistoni]
 gi|194157804|gb|EDW72705.1| GK17038 [Drosophila willistoni]
          Length = 844

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92
             +E  V +++    WPSR               V+L GP G+GK+ L            
Sbjct: 615 PGLELVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 662

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            S +A S +  +I  + P LL     +  ++  + ++ N        +L 
Sbjct: 663 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSAKPCVLF 710


>gi|195055733|ref|XP_001994767.1| GH14249 [Drosophila grimshawi]
 gi|193892530|gb|EDV91396.1| GH14249 [Drosophila grimshawi]
          Length = 392

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 49/174 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P R V+L GP G GK+ LA   ++++ +     +        +     ++          
Sbjct: 172 PPRGVLLYGPPGCGKTMLAKAVANQTTAAFIHVVGSEFVQKYLGEGPRMVRDIFRLAKQN 231

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                 +++ID +                  L  ++N +       +  ++M        
Sbjct: 232 APSVIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIMATNRADTL 291

Query: 148 -PVSW---------GVCLPDLCS-RLK-AATVVKISLPDDDFLEKVIVKMFADR 189
            P               LPD    RL       KI+L +D  LE++I +  ADR
Sbjct: 292 DPALLRPGRLDRKIEFPLPDRRQKRLVFTTITAKINLAEDVDLEELIAR--ADR 343


>gi|40806170|ref|NP_955468.1| spastin isoform 2 [Homo sapiens]
 gi|114576881|ref|XP_515388.2| PREDICTED: spastin isoform 2 [Pan troglodytes]
 gi|5689503|dbj|BAA83035.1| KIAA1083 protein [Homo sapiens]
 gi|119620867|gb|EAX00462.1| spastin, isoform CRA_b [Homo sapiens]
 gi|152012808|gb|AAI50261.1| Spastin [Homo sapiens]
 gi|168269668|dbj|BAG09961.1| spastin [synthetic construct]
 gi|311348859|gb|ADP91575.1| spastin [Homo sapiens]
 gi|311348862|gb|ADP91577.1| spastin [Homo sapiens]
 gi|311348865|gb|ADP91579.1| spastin [Homo sapiens]
 gi|311348868|gb|ADP91581.1| spastin [Homo sapiens]
 gi|311348871|gb|ADP91583.1| spastin [Homo sapiens]
 gi|311348874|gb|ADP91585.1| spastin [Homo sapiens]
 gi|311348877|gb|ADP91587.1| spastin [Homo sapiens]
 gi|311348880|gb|ADP91589.1| spastin [Homo sapiens]
 gi|311348883|gb|ADP91591.1| spastin [Homo sapiens]
 gi|311348886|gb|ADP91593.1| spastin [Homo sapiens]
 gi|311348889|gb|ADP91595.1| spastin [Homo sapiens]
 gi|311348892|gb|ADP91597.1| spastin [Homo sapiens]
 gi|311348895|gb|ADP91599.1| spastin [Homo sapiens]
 gi|311348898|gb|ADP91601.1| spastin [Homo sapiens]
 gi|311348901|gb|ADP91603.1| spastin [Homo sapiens]
 gi|311348904|gb|ADP91605.1| spastin [Homo sapiens]
 gi|311348907|gb|ADP91607.1| spastin [Homo sapiens]
 gi|311348910|gb|ADP91609.1| spastin [Homo sapiens]
 gi|311348913|gb|ADP91611.1| spastin [Homo sapiens]
 gi|311348916|gb|ADP91613.1| spastin [Homo sapiens]
 gi|311348919|gb|ADP91615.1| spastin [Homo sapiens]
 gi|311348922|gb|ADP91617.1| spastin [Homo sapiens]
 gi|311348925|gb|ADP91619.1| spastin [Homo sapiens]
 gi|311348928|gb|ADP91621.1| spastin [Homo sapiens]
 gi|311348931|gb|ADP91623.1| spastin [Homo sapiens]
 gi|311348934|gb|ADP91625.1| spastin [Homo sapiens]
 gi|311348937|gb|ADP91627.1| spastin [Homo sapiens]
 gi|311348940|gb|ADP91629.1| spastin [Homo sapiens]
 gi|311348943|gb|ADP91631.1| spastin [Homo sapiens]
 gi|311348946|gb|ADP91633.1| spastin [Homo sapiens]
 gi|311348949|gb|ADP91635.1| spastin [Homo sapiens]
 gi|311348952|gb|ADP91637.1| spastin [Homo sapiens]
 gi|311348955|gb|ADP91639.1| spastin [Homo sapiens]
 gi|311348958|gb|ADP91641.1| spastin [Homo sapiens]
 gi|311348961|gb|ADP91643.1| spastin [Homo sapiens]
 gi|311348964|gb|ADP91645.1| spastin [Homo sapiens]
 gi|311348967|gb|ADP91647.1| spastin [Homo sapiens]
 gi|311348970|gb|ADP91649.1| spastin [Homo sapiens]
 gi|311348973|gb|ADP91651.1| spastin [Homo sapiens]
 gi|311348976|gb|ADP91653.1| spastin [Homo sapiens]
          Length = 584

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 342 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 391


>gi|69247927|ref|ZP_00604543.1| AAA ATPase, central region [Enterococcus faecium DO]
 gi|257880292|ref|ZP_05659945.1| AAA ATPase [Enterococcus faecium 1,230,933]
 gi|257882146|ref|ZP_05661799.1| AAA ATPase [Enterococcus faecium 1,231,502]
 gi|257885338|ref|ZP_05664991.1| AAA ATPase [Enterococcus faecium 1,231,501]
 gi|257894205|ref|ZP_05673858.1| AAA ATPase [Enterococcus faecium 1,231,408]
 gi|258614762|ref|ZP_05712532.1| recombination factor protein RarA [Enterococcus faecium DO]
 gi|260562406|ref|ZP_05832920.1| AAA ATPase [Enterococcus faecium C68]
 gi|293556301|ref|ZP_06674886.1| ATPase, AAA family [Enterococcus faecium E1039]
 gi|293560717|ref|ZP_06677196.1| ATPase, AAA family [Enterococcus faecium E1162]
 gi|293566152|ref|ZP_06678555.1| ATPase, AAA family [Enterococcus faecium E1071]
 gi|294618776|ref|ZP_06698303.1| ATPase, AAA family [Enterococcus faecium E1679]
 gi|294622228|ref|ZP_06701288.1| ATPase, AAA family [Enterococcus faecium U0317]
 gi|68194629|gb|EAN09116.1| AAA ATPase, central region [Enterococcus faecium DO]
 gi|257814520|gb|EEV43278.1| AAA ATPase [Enterococcus faecium 1,230,933]
 gi|257817804|gb|EEV45132.1| AAA ATPase [Enterococcus faecium 1,231,502]
 gi|257821194|gb|EEV48324.1| AAA ATPase [Enterococcus faecium 1,231,501]
 gi|257830584|gb|EEV57191.1| AAA ATPase [Enterococcus faecium 1,231,408]
 gi|260073330|gb|EEW61671.1| AAA ATPase [Enterococcus faecium C68]
 gi|291590078|gb|EFF21870.1| ATPase, AAA family [Enterococcus faecium E1071]
 gi|291594964|gb|EFF26314.1| ATPase, AAA family [Enterococcus faecium E1679]
 gi|291598270|gb|EFF29363.1| ATPase, AAA family [Enterococcus faecium U0317]
 gi|291601560|gb|EFF31827.1| ATPase, AAA family [Enterococcus faecium E1039]
 gi|291605308|gb|EFF34763.1| ATPase, AAA family [Enterococcus faecium E1162]
          Length = 428

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 32/178 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225
             ++  +     D  R +      +D+      +  + R+        ++ ++   LS
Sbjct: 153 QDIQLAVEHALRDKERGLGQQAIQLDEDA----LLHLSRATNGDLRSALNGLELATLS 206


>gi|308158252|gb|EFO61017.1| 26S protease regulatory subunit 6A [Giardia lamblia P15]
          Length = 501

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           PS+ V+L G  G+GK+ LA   + ++  +     A  L  + I     +++E
Sbjct: 258 PSKGVLLYGVPGTGKTALARALAHEANCSFLQLTATQLVQLYIGDGSAMVIE 309


>gi|261837854|gb|ACX97620.1| hypothetical protein KHP_0409 [Helicobacter pylori 51]
          Length = 391

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|255710443|ref|XP_002551505.1| KLTH0A00968p [Lachancea thermotolerans]
 gi|238932882|emb|CAR21063.1| KLTH0A00968p [Lachancea thermotolerans]
          Length = 427

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 41/142 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 156 PTSGILLFGPPGTGKSYLAKAVATEANSTFFSISSSDLVSKWMGESERLVKQLFAMAREN 215

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152
                 ++++D L                T+L   +N + +     L++ A   P     
Sbjct: 216 KPSIIFIDEVDALTGQRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 275

Query: 153 -----------VCLPDLCSRLK 163
                      + LPDL +R +
Sbjct: 276 AIRRRFEKRIYISLPDLAARTR 297


>gi|238026471|ref|YP_002910702.1| recombination factor protein RarA [Burkholderia glumae BGR1]
 gi|237875665|gb|ACR27998.1| AAA ATPase, central region [Burkholderia glumae BGR1]
          Length = 436

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 24/190 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        E ++      T L
Sbjct: 50  MILWGPPGVGKTTLARLTAHAFDCEFIAISAVLGGVKDIRESMEQARETLNR-SGRHTIL 108

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 109 FVDEIHRFNKSQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162

Query: 173 PDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL-SRGMG 229
             DD + +++ +    A   +  +      ++   +        L+++    AL +R   
Sbjct: 163 LSDDEMRQLLARAQQIALDGLEFEPLAVDTLIGYADGDARRFLNLLEQAQTAALSARTNR 222

Query: 230 ITRSLAAEVL 239
           I     A  +
Sbjct: 223 IDADFVASAM 232


>gi|125991900|ref|NP_001075060.1| spastin [Bos taurus]
 gi|226694297|sp|A2VDN5|SPAST_BOVIN RecName: Full=Spastin
 gi|124829112|gb|AAI33328.1| Spastin [Bos taurus]
 gi|296482694|gb|DAA24809.1| spastin [Bos taurus]
          Length = 614

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 372 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 421


>gi|229542261|ref|ZP_04431321.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1]
 gi|229326681|gb|EEN92356.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1]
          Length = 670

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD    E V+     ++ +     L A I QR       A
Sbjct: 318 ------LRPGRFDRQITVDRPDVHGREAVLRVHARNKPLDPSVDLKA-IAQRTP-GFSGA 369

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 370 -DLENLLNEAALIAARA 385


>gi|84490197|ref|YP_448429.1| putative 26S protease, regulatory subunit [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373516|gb|ABC57786.1| putative 26S protease, regulatory subunit [Methanosphaera
           stadtmanae DSM 3091]
          Length = 370

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 34/157 (21%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSIL 104
           D + +W  R ++  G  G+GK+ LA   +++                   + A  +  + 
Sbjct: 147 DKFKNWAPRNILFYGRPGTGKTMLAQALANELNVPIHMIKATSLIGNHVGDGANQIHELY 206

Query: 105 IDTR----KPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTF 147
              R      + +++ID +                   L   ++ I   DS + + A   
Sbjct: 207 KQARYTKPTVIFIDEIDAIALERKYQSLRGDVTEIVNALLTEMDGIEDNDSIITICATNN 266

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           P      +    SR +    ++ +LP+D+    ++ K
Sbjct: 267 PEILDYAI---RSRFEE--EIEFTLPNDEERRIILEK 298


>gi|84686620|ref|ZP_01014512.1| putative transposase [Maritimibacter alkaliphilus HTCC2654]
 gi|84686630|ref|ZP_01014522.1| putative transposase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665294|gb|EAQ11772.1| putative transposase [Rhodobacterales bacterium HTCC2654]
 gi|84665304|gb|EAQ11782.1| putative transposase [Rhodobacterales bacterium HTCC2654]
          Length = 225

 Score = 42.4 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 30/168 (17%)

Query: 11  FVPDKQKNDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP----SR 65
            +  + +  Q ++ + Q+  +  P    +   D       E    LI    +       R
Sbjct: 26  LLTAEIREKQARSVKYQMTIAKLPLAKELEEFDFEAAEVNET---LIRDLANGDFLDHQR 82

Query: 66  VVILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSILID---TRKPVLLED 115
            ++L+G +G+GK+ LA +I     R+ R        ++   LD+        R   L+  
Sbjct: 83  NLVLIGGTGTGKTHLAVSIARTCIRAGRRGRFFNVVDLVNKLDAEARAERQGRTADLISR 142

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +D L  ++             LFH+I+ +++  +S+++T       W 
Sbjct: 143 LDFLILDELGYLPFAQTGGQLLFHLISKLYER-TSIIVTTNLAFGEWP 189


>gi|323140181|ref|ZP_08075163.1| IstB domain protein ATP-binding protein [Methylocystis sp. ATCC
           49242]
 gi|322394563|gb|EFX97182.1| IstB domain protein ATP-binding protein [Methylocystis sp. ATCC
           49242]
          Length = 243

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKPVLLE-- 114
            R ++LVG +G+GK+ LA   +        + R     ++   L++     R+  L +  
Sbjct: 99  QRNIVLVGGTGTGKTHLAIAIARSCIRASLRGRFYTTVDLVNRLEAETRAGRQGRLADYL 158

Query: 115 -DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
             +D++  ++             LFH+I+ +++  +S+++T       W 
Sbjct: 159 TRLDVVILDELGYLPFAQAGGQLLFHLISRLYER-TSIIVTTNLAFGEWP 207


>gi|317179185|dbj|BAJ56973.1| recombination factor protein RarA [Helicobacter pylori F30]
          Length = 391

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|313212248|emb|CBY36254.1| unnamed protein product [Oikopleura dioica]
 gi|313232801|emb|CBY09484.1| unnamed protein product [Oikopleura dioica]
          Length = 801

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 44/161 (27%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108
           R ++L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +  
Sbjct: 237 RGILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAP 296

Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + +++ID +                 QL  +++ + Q    ++M A   P S    L 
Sbjct: 297 SIIFIDEIDSIAPKRDKTNGEVERRIVSQLLTLMDGLKQRAHVVVMGATNRPNSIDAALR 356

Query: 156 -------------PDLCSRLK--AATVVKISLPDDDFLEKV 181
                        PD   R++       K+ L DD  LE V
Sbjct: 357 RFGRFDREVDIGIPDTVGRMEILQIHTKKMKLADDVDLEVV 397



 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 508 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREVFDKA 564


>gi|312882487|ref|ZP_07742228.1| recombination factor protein RarA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369887|gb|EFP97398.1| recombination factor protein RarA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 448

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 36/198 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I +   K       + L    T
Sbjct: 54  MILWGPPGTGKTTLAELAAQYADAEVERVSAVTSGVKEIRLAIDKA----RENKLAGRRT 109

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V K+
Sbjct: 110 VLFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 163

Query: 171 SLPD-DDFLEKVIVK-MFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           S  D DD L  +      +D  +          +   + + ++  +  +   ++ + ++A
Sbjct: 164 SALDKDDILLALKQAIECSDNGLGQSTALFKDNVLDRLAELVQGDVRMSLNYLELLYDMA 223

Query: 224 LSRGMG---ITRSLAAEV 238
                G   IT +L AEV
Sbjct: 224 EEDAKGNKVITLALLAEV 241


>gi|303388375|ref|XP_003072422.1| DNA replication factor C small subunit [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303301562|gb|ADM11062.1| DNA replication factor C small subunit [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 284

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 24/165 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
             ++L GP G+GK+  A++ + +         R          + +  ++  K V+L++ 
Sbjct: 34  PNLLLYGPPGTGKTTFAHLLATRKLELNASDERGISVIREKIKVYASTLEKDKTVILDEC 93

Query: 117 DLLDFNDTQLFHIINSIHQY--DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           + L  +     H +  + +   ++  +          G   P L SRL     VK +L D
Sbjct: 94  ENLTSDAQ---HCLRRVIEDSVNTRFIFITNYPSKIIG---P-LRSRLVG---VKFTLAD 143

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           +  LE +      +  +  DK+L   + +     L  A  ++  +
Sbjct: 144 NRVLEGI----GGNEGLGYDKELYRRLFKLCGNDLRKAINVLQGI 184


>gi|239627918|ref|ZP_04670949.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518064|gb|EEQ57930.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium
           1_7_47FAA]
          Length = 625

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 59/191 (30%), Gaps = 51/191 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 215 ALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANDKAPCI 274

Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++        +++ A   P S     
Sbjct: 275 VFIDEIDTIGKKRDGGGMSGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDKAL 334

Query: 152 ----------GVCLPDLCSRLKAATVVK---ISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
                      V LPDL  R +A   V    + + DD     +           +   + 
Sbjct: 335 LRPGRFDRRVPVELPDLKGR-EAILRVHGQNVKMSDDVDYSAIARATAGASGAELANIIN 393

Query: 199 AYIVQ--RMER 207
              ++  RM R
Sbjct: 394 EAALRAVRMGR 404


>gi|237737738|ref|ZP_04568219.1| holliday junction DNA helicase ruvB [Fusobacterium mortiferum ATCC
           9817]
 gi|229419618|gb|EEO34665.1| holliday junction DNA helicase ruvB [Fusobacterium mortiferum ATCC
           9817]
          Length = 333

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 64/184 (34%), Gaps = 41/184 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + +++  +         L+           LE+ D+L  ++   
Sbjct: 55  ILLYGPPGLGKTTLAGVVANEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINS--------IHQYDSSLLMTARTFPVS-WGVCLPD------------LCS--RLK 163
            H +N+          +     ++  +        + LP+            L S  R +
Sbjct: 113 -HRLNNTVEEILYPAMEDGELDIIIGKGPSARSIRIELPNFTLIGATTRAGLLSSPLRDR 171

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFID--------------KKLAAYIVQRMERSL 209
                ++    ++ L ++I++      + ++               ++A  +++R+ R  
Sbjct: 172 FGVTHRMEYYTEEELAQIILRGGKILGVKVEREGALELASRSRGTPRIANRLLKRV-RDY 230

Query: 210 VFAE 213
               
Sbjct: 231 CEIR 234


>gi|227356776|ref|ZP_03841161.1| recombination ATPase [Proteus mirabilis ATCC 29906]
 gi|227163066|gb|EEI48001.1| recombination ATPase [Proteus mirabilis ATCC 29906]
          Length = 457

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I     ++   R S +   +  I    R  + +   +      T
Sbjct: 61  MILWGPPGTGKTTLAEIIGRYAQADIERLSAVTSGIKEI----RAAIDIAHQNRNAGRRT 116

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 117 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 170

Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDK---KLAAYIVQ-RMERSLVFAEKLVDKM 219
               +  +E+V+ +   D       R I +     K+ A +V     RSL   E + D  
Sbjct: 171 RSLTETDIEQVLQQALDDTERGLGGRNIILPDNTRKMIAELVNGDARRSLNLLEMMADMA 230

Query: 220 DNLALSRGMGITRSLAAEV 238
           +  +      +T  L  E+
Sbjct: 231 EVDS-QGKRTLTAELLKEI 248


>gi|225377756|ref|ZP_03754977.1| hypothetical protein ROSEINA2194_03407 [Roseburia inulinivorans DSM
           16841]
 gi|225210433|gb|EEG92787.1| hypothetical protein ROSEINA2194_03407 [Roseburia inulinivorans DSM
           16841]
          Length = 443

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 38/177 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G+GK+ LA + ++ + +      A S     +        ED+     N+   
Sbjct: 55  IILYGPPGTGKTTLAKVIANTTSAEFLQINATSAGKKDM--------EDVIAQAKNNQGM 106

Query: 126 ------LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
                 LF    H  N           +  + +L+ A T    + V    L SR   + +
Sbjct: 107 YGKKTILFIDEIHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGA-LLSR---SII 162

Query: 168 VKISLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVD 217
            ++     + ++ +I++   D++         I+++   ++          A   ++
Sbjct: 163 FELKNLSTEDIKTLILRAVNDKEKGMGAYDAVIEEEALDFLADVANGDARAALTAIE 219


>gi|154149662|ref|YP_001403280.1| Holliday junction DNA helicase RuvB [Candidatus Methanoregula
           boonei 6A8]
 gi|166231501|sp|A7I4H6|RUVB_METB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|153998214|gb|ABS54637.1| Holliday junction DNA helicase RuvB [Methanoregula boonei 6A8]
          Length = 335

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   ++  GP G GK+ LA+I + +  +   +     L+           L++ D+L  +
Sbjct: 51  PIDHILFAGPPGLGKTTLAHIIAREMGAAIRTTTGPVLEKTGDMAAIATALQNGDVLFID 110

Query: 123 DTQLFHIINSIHQY 136
           +    H +N + + 
Sbjct: 111 EI---HRMNPVVEE 121


>gi|114771182|ref|ZP_01448602.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255]
 gi|114548107|gb|EAU50994.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255]
          Length = 639

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 47/198 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +L+GP G+GK+ LA   + ++    F+        + +                     
Sbjct: 194 ALLIGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 253

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++     +  +L+ A   P      L
Sbjct: 254 VFIDEIDAVGRHRGAGHGGGNDEREQTLNQLLVEMDGFSANEGVILLAATNRPDVLDPAL 313

Query: 156 P-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
                 D          V++  PD    EK++      R+  +   +   I+ R      
Sbjct: 314 KRPGRFD--------RQVQVPNPDIKGREKILNVHA--RKSPLGPDVDLRIIARGTPGFS 363

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  AL+   
Sbjct: 364 GA-DLANLVNEAALTAAR 380


>gi|244790112|ref|NP_058658.2| spastin isoform 2 [Mus musculus]
          Length = 613

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 420


>gi|149050667|gb|EDM02840.1| spastin (predicted) [Rattus norvegicus]
          Length = 299

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 122 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 171


>gi|28279482|gb|AAH46286.1| Spastin [Mus musculus]
 gi|148706481|gb|EDL38428.1| spastin, isoform CRA_a [Mus musculus]
          Length = 613

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 420


>gi|66357928|ref|XP_626142.1| nuclear VCP like protein with 2 AAA ATpase domains [Cryptosporidium
           parvum Iowa II]
 gi|46227286|gb|EAK88236.1| nuclear VCP like protein with 2 AAA ATpase domains [Cryptosporidium
           parvum Iowa II]
          Length = 695

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   S
Sbjct: 442 PSGVL-LYGPPGCGKTLLAKAIAKESGANFIS 472


>gi|328865371|gb|EGG13757.1| 26S proteasome ATPase 3 subunit [Dictyostelium fasciculatum]
          Length = 426

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++ ST        L  + I     ++          
Sbjct: 206 PPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 265

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +       +  ++ A       
Sbjct: 266 GPTIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDIL 325

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  LP+++    ++      R++ ++  +    + R      
Sbjct: 326 DPAL--LRSGRLD--RKIEFPLPNEEARAHILQ--IHSRKMNVNPDVNFEELARSTEDFN 379

Query: 211 FAE 213
            A+
Sbjct: 380 GAQ 382


>gi|240280730|gb|EER44234.1| vacuolar sorting protein [Ajellomyces capsulatus H143]
 gi|325089013|gb|EGC42323.1| vacuolar sorting-associated protein [Ajellomyces capsulatus H88]
          Length = 433

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 163 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 213 -KQLF---NMARESRPAIIF 228


>gi|296824210|ref|XP_002850606.1| 26S protease regulatory subunit 6A [Arthroderma otae CBS 113480]
 gi|238838160|gb|EEQ27822.1| 26S protease regulatory subunit 6A [Arthroderma otae CBS 113480]
          Length = 461

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%)

Query: 45  VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
           V    +Q   L+++  WP              P   ++  GP G+GK+ LA   + ++ +
Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267

Query: 91  TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122
           T        L  + I     ++                ++++D +               
Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 327

Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178
              +  ++N        D   ++ A          L  L S RL     ++  LP+++  
Sbjct: 328 QRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 383

Query: 179 EKVIVKMFADRQIFIDKKL 197
            +++      R++ +D K+
Sbjct: 384 AQIL--RIHSRKMTVDDKV 400


>gi|198465206|ref|XP_002134929.1| GA23750 [Drosophila pseudoobscura pseudoobscura]
 gi|198150056|gb|EDY73556.1| GA23750 [Drosophila pseudoobscura pseudoobscura]
          Length = 1329

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92
             +E  V +++    WPSR               V+L GP G+GK+ L            
Sbjct: 725 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 772

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            S +A S +  +I  + P LL     +  ++  + ++ N        +L 
Sbjct: 773 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 820


>gi|158424151|ref|YP_001525443.1| recombination factor protein RarA [Azorhizobium caulinodans ORS
           571]
 gi|158331040|dbj|BAF88525.1| AAA ATPase [Azorhizobium caulinodans ORS 571]
          Length = 469

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 28/183 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            IL GP GSGK+ +A +   +     F  ++  L  +    +       +       T +
Sbjct: 85  FILWGPPGSGKTTIARL-VARGLGFEFVQLSAVLSGVADLRKVVETARQLRTGSGRQTAV 143

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T   S+ +    L SR   A V  +   +
Sbjct: 144 FVDELHRFNRTTQDALLPHVEDGTIVLIGATTENPSFSMVAA-LLSR---AKVYTLRRLE 199

Query: 175 DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK---------MDNLA 223
              L +++ +    A R + +D +    + +  +    +   LV++         +D  A
Sbjct: 200 KADLARLLERAEAHAGRCLPLDAQAREALTEMADGDGRYLLGLVEELLALPPGPDLDLEA 259

Query: 224 LSR 226
           L++
Sbjct: 260 LAQ 262


>gi|126179507|ref|YP_001047472.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus
           marisnigri JR1]
 gi|125862301|gb|ABN57490.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1]
          Length = 808

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 67/206 (32%), Gaps = 54/206 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ +A   + +  +                     + +  +    +
Sbjct: 217 PPKGVLLYGPPGTGKTLIAKAVASEVDAHFITLSGPEIMSKYYGESEERLREVFEEAQEN 276

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +                 QL  +++ +      +++ A   P      
Sbjct: 277 APSIVFIDEIDSIAPKREEVKGEVERRIVAQLLALMDGLKTRGQVVVIAATNLPDMIDPA 336

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RS 208
           L       +       ++I +PD    +++       R + + + +      R++   RS
Sbjct: 337 LR------RGGRFDREIEIGIPDTKGRQQIFQ--IHTRGMPLAEDV------RLDDYARS 382

Query: 209 ----LVFAEKLVDKMDNLALSRGMGI 230
               +     L+ K    A+     I
Sbjct: 383 THGFVGADIALLAK--EAAMHALRRI 406



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R ++L GP G+GK+ LA   +++S S   S     L
Sbjct: 489 PPRGILLFGPPGTGKTLLAKAVANESESNFISVKGPEL 526


>gi|148231546|ref|NP_001086725.1| spastin [Xenopus laevis]
 gi|82235616|sp|Q6AZT2|SPAST_XENLA RecName: Full=Spastin
 gi|50603653|gb|AAH77358.1| Spg4-prov protein [Xenopus laevis]
          Length = 600

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 358 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 407


>gi|295105669|emb|CBL03213.1| Recombination protein MgsA [Faecalibacterium prausnitzii SL3/3]
          Length = 424

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 35/202 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112
             +I  GPSG+GK+ +A I ++ S  T                + K + ++       + 
Sbjct: 40  PNMIFYGPSGTGKTTVARIIAENSGMTLHKLNGTSCGTGDIKAVLKDIGTLAAAGGILLY 99

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-- 169
           L++I  L+      L   I    +  S  L+ + T    + +    L SR    TV +  
Sbjct: 100 LDEIQYLNKKQQQSLLECI----EDGSVTLIASTTENPYFYIYNA-LLSR---CTVFEFK 151

Query: 170 -ISLPD-DDFLEKVIVKMFADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            ++  D +  +   + ++    Q+ +  D+   AY+    E +     K +  +D    +
Sbjct: 152 PLAAADVERGVRNAVQRLSEGEQVPVCMDEDACAYLA---ESAGGDLRKALGCLDFAVTA 208

Query: 226 R-----GMGITRSLAAEVLKET 242
                    IT  +  +V + T
Sbjct: 209 APVENGEKRITLDMIRQVTRRT 230


>gi|270291003|ref|ZP_06197226.1| ATPase [Pediococcus acidilactici 7_4]
 gi|270280399|gb|EFA26234.1| ATPase [Pediococcus acidilactici 7_4]
          Length = 425

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 27/169 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 41  MILYGPPGTGKTSIASAIAGSTKYAFRMLNAATDSKKQLQIVAEEAKMSGTVVLLLDEIH 100

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++     
Sbjct: 101 RLDKTKQDFLLPHL-----ESGQIILIGATTENPYININ-PAIRSR---TQIFEVKPLTP 151

Query: 176 DFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVD 217
             +++ +     D Q       + +D+    ++ +     L  A   V+
Sbjct: 152 ADIKEAVEMALQDSQRGLGDLPLQMDENALQFVSEATGGDLRSALNAVE 200


>gi|167627500|ref|YP_001678000.1| recombination factor protein RarA [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597501|gb|ABZ87499.1| AAA family-ATPase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 411

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 29/193 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS---------NIAKSLDSILIDTRKPVLLEDID 117
           +IL G  G GK+ LA I +   +   F          ++ K +          + L++I 
Sbjct: 43  LILCGKPGVGKTTLAKIIASSKQLEFFELSAVDSGVKDVKKLIADNQHLGSFVLFLDEIH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
             + +   L        +    +L+  T              L SR     ++++   + 
Sbjct: 103 RFNKSQQDLLLPY---VESGKIILIGATTENPTYYLNNA---LVSR---VFILRLKRLNI 153

Query: 176 DFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
               K+I +      + A     ID  L   I    E       K+++ ++ + L     
Sbjct: 154 SETRKLIQRAITKDELLAKHSFEIDDDLYNAIHNYSE---GDCRKILNLLERMFLISDRT 210

Query: 230 ITRSLAAEVLKET 242
            T  L  ++  + 
Sbjct: 211 NTIHLDKDLFDQA 223


>gi|156083703|ref|XP_001609335.1| cell division cycle protein ATPase [Babesia bovis T2Bo]
 gi|154796586|gb|EDO05767.1| cell division cycle protein ATPase, putative [Babesia bovis]
          Length = 922

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 61/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + VIL GP G+GK+ +A   + ++ +                   + + ++ +    +
Sbjct: 394 PPKGVILHGPPGTGKTLIARAIASETGAHCVVINGPEIMSKHVGESEAKLRRAFEKASKN 453

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ I    + +++ A     S    
Sbjct: 454 SPAIIFIDEIDSIATKREKSPSELERRIVSQLLTLMDGIEPSKNVVVLAATNRINSIDTA 513

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    ++I+  D++   +++      R + +   +
Sbjct: 514 LR----RFGRFDREIEIAACDEEERYEIL--KIKTRGMRLSPDI 551


>gi|145296361|ref|YP_001139182.1| hypothetical protein cgR_2276 [Corynebacterium glutamicum R]
 gi|140846281|dbj|BAF55280.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 687

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            R +++ GP G  K      ++ +      +   K      I     V+++D+ L D +D
Sbjct: 27  GRFLVVTGPHGVNKEHFTREFAAELGEFEVNPFLKKRPRASI-----VVVDDVHLADKDD 81

Query: 124 TQLFHIINSIHQYDSSLLMTA--RTFPVSWGVCLPDL 158
            Q    +N +H    ++L TA  R    +  + LP L
Sbjct: 82  IQ--KTLNLVHTKGLTVLATAPHRIPGATDLLALPPL 116


>gi|47217168|emb|CAG11004.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 440

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++ +
Sbjct: 207 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRD 258


>gi|56964617|ref|YP_176348.1| hypothetical protein ABC2853 [Bacillus clausii KSM-K16]
 gi|56910860|dbj|BAD65387.1| DNA replication protein [Bacillus clausii KSM-K16]
          Length = 278

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 28/144 (19%)

Query: 40  RDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS----DKSRST 91
            D+ +V    E A    ++ ++ +  W    + L G  G+GKS LA   +     K  + 
Sbjct: 95  FDNFIVRPGSEVAHKACLKYVNEFKEWGGDSLGLWGTYGNGKSLLAAAVANELSSKGHTV 154

Query: 92  RFSNIAKSLDSI-----------------LIDTRKPVLLEDIDL---LDFNDTQLFHIIN 131
            F    + LD +                  + T   ++L+DI      ++ +   F II+
Sbjct: 155 VFQTTKQLLDKLKSSFGDKSNFKYDEIIRALVTCDLLVLDDIGAEKVTEWTEETFFGIID 214

Query: 132 SIHQYDSSLLMTARTFPVSWGVCL 155
             ++    +  T    P      +
Sbjct: 215 HRYRKKRPIFYTTNLRPSELHTKI 238


>gi|87125265|ref|ZP_01081111.1| putative ATPase, AAA family protein [Synechococcus sp. RS9917]
 gi|86167034|gb|EAQ68295.1| putative ATPase, AAA family protein [Synechococcus sp. RS9917]
          Length = 738

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 28/217 (12%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSC 79
           + ++ Q   +         DD  V      A   +        RV  ++L GP G GK+ 
Sbjct: 12  QLRQRQAPLADRLRPR-DLDDF-VGQGAILAEGRLLRRAIAADRVGNLLLHGPPGVGKTT 69

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH- 134
           LA I ++ +R+   S  A       +        + ++      T LF    H  NS   
Sbjct: 70  LARIIANHTRAHFSSLNAVLAGVKELRAEVDAARQRLERHGLR-TILFIDEVHRFNSAQQ 128

Query: 135 -------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
                  +  +  L+ A T    + V    L SR   + + ++   + + L +++ +  +
Sbjct: 129 DALLPWVENGTLTLIGATTENPYFEVNKA-LVSR---SRLFRLQALEAEDLHRLLQRALS 184

Query: 188 D-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           D       R + +  + AA++V             ++
Sbjct: 185 DSERGYGNRAVSVTAEAAAHLVDVANGDARSLLNALE 221


>gi|67623819|ref|XP_668192.1| AAA ATPase [Cryptosporidium hominis TU502]
 gi|54659385|gb|EAL37964.1| AAA ATPase [Cryptosporidium hominis]
          Length = 690

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   S
Sbjct: 437 PSGVL-LYGPPGCGKTLLAKAIAKESGANFIS 467


>gi|330794089|ref|XP_003285113.1| hypothetical protein DICPUDRAFT_148953 [Dictyostelium purpureum]
 gi|325084939|gb|EGC38356.1| hypothetical protein DICPUDRAFT_148953 [Dictyostelium purpureum]
          Length = 743

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 20/120 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111
             +IL GP G GK+ LA I + KS +                  I K+ +S++   +  +
Sbjct: 294 PSIILYGPPGCGKTTLAKIITKKSNANYLELSAVGSGVKDVKEAIDKAKNSLMFGKKTIL 353

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            +++I   + +   +        +  + +L+ A T   S+ +    L SR     V ++ 
Sbjct: 354 FIDEIHRYNKSQQDVLLP---AIESGTIILIGATTENPSFEINNA-LLSR---CKVFRLE 406


>gi|261209220|ref|ZP_05923612.1| AAA ATPase [Enterococcus faecium TC 6]
 gi|289566136|ref|ZP_06446571.1| AAA domain-containing protein yrvN [Enterococcus faecium D344SRF]
 gi|294614190|ref|ZP_06694110.1| ATPase, AAA family [Enterococcus faecium E1636]
 gi|260076766|gb|EEW64501.1| AAA ATPase [Enterococcus faecium TC 6]
 gi|289162081|gb|EFD09946.1| AAA domain-containing protein yrvN [Enterococcus faecium D344SRF]
 gi|291592966|gb|EFF24555.1| ATPase, AAA family [Enterococcus faecium E1636]
          Length = 428

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 32/178 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225
             ++  +     D  R +      +D+      +  + R+        ++ ++   LS
Sbjct: 153 QDIQLAVEHALRDKERGLGQQAIQLDEDA----LLHLSRATNGDLRSALNGLELATLS 206


>gi|257467707|ref|ZP_05631803.1| Holliday junction DNA helicase RuvB [Fusobacterium ulcerans ATCC
           49185]
 gi|317062000|ref|ZP_07926485.1| holliday junction DNA helicase B [Fusobacterium ulcerans ATCC
           49185]
 gi|313687676|gb|EFS24511.1| holliday junction DNA helicase B [Fusobacterium ulcerans ATCC
           49185]
          Length = 340

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + + +  +         L+           LE+ D+L  ++   
Sbjct: 55  ILLYGPPGLGKTTLAGVIATEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +N+  + 
Sbjct: 113 -HRLNNTVEE 121


>gi|227833965|ref|YP_002835672.1| Putative transposase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454981|gb|ACP33734.1| Putative transposase [Corynebacterium aurimucosum ATCC 700975]
          Length = 165

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 30/150 (20%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------- 104
           +W   P+ + IL  P+G+GK+ +A      +    +S     L  ++             
Sbjct: 11  NWRENPTNIHILA-PTGTGKTYIACAIGIAACKAGYSVAYYRLGQLVDMLAVFSPTDQNY 69

Query: 105 ------IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLP 156
                 +     ++++D   +  N      +   I   D  L  L+++++    W   LP
Sbjct: 70  LDKMRKLINVDVLIIDDFMTISINQRGQEDLTKIIFDRDGRLPTLISSQSAAAYWVETLP 129

Query: 157 D------LCSRLKAATVVKISLPDDDFLEK 180
           D      L SRL     + I   D D  + 
Sbjct: 130 DRVGADSLVSRLNNGHRIHIG--DFDMRKA 157


>gi|255550263|ref|XP_002516182.1| 26S protease regulatory subunit, putative [Ricinus communis]
 gi|223544668|gb|EEF46184.1| 26S protease regulatory subunit, putative [Ricinus communis]
          Length = 430

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 49/154 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 206 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 264

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 265 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 324

Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKIS 171
            P               LPDL SR   A + KI 
Sbjct: 325 DPALLRPGRLDRKVEFGLPDLESR---AQIFKIH 355


>gi|212635390|ref|YP_002311915.1| recombination factor protein RarA [Shewanella piezotolerans WP3]
 gi|212556874|gb|ACJ29328.1| AAA ATPase, central region [Shewanella piezotolerans WP3]
          Length = 443

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 34/177 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++  GP G+GK+ LA + +  + +   R S +   +  I         +E    +     
Sbjct: 52  MMFWGPPGTGKTTLAELVASYANAHVERISAVTSGVKEIRS------AIEHAKSVAQSRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR   A V  
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161

Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           I     + + ++  +   D       R++ +   +A  + +  +     A  L++ +
Sbjct: 162 IKQLTIEEICQITQQALLDEERGLGKRKLILPPDVAIKLAKVCDGDARKALNLIELI 218


>gi|168047367|ref|XP_001776142.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672517|gb|EDQ59053.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 495

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 36/193 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS  A     + +                     
Sbjct: 242 VLLVGPPGTGKTLLARAVAGEAGVPFFSASASEFVEMFVGRGAARIRELFAEAKKNTPSI 301

Query: 111 VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--P 156
           V ++++D +         ++      QL   ++        +++ A   P      L  P
Sbjct: 302 VFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFDSETGVMVIAATNRPEVLDAALTRP 361

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
              SR      V +  PD +  ++V+        +  D      ++ ++    V A  L 
Sbjct: 362 GRISR-----RVNVDAPDFEGRQQVLAVHMRSTPVDGDAATVRAVIAKLTPGFVGA-DLA 415

Query: 217 DKMDNLALSRGMG 229
           + ++  AL     
Sbjct: 416 NVVNEAALLAARE 428


>gi|1066063|gb|AAB34132.1| P26s4 [Cricetinae gen. sp.]
          Length = 143

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
             VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 62  PKVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 111


>gi|85859556|ref|YP_461758.1| istB-like ATP binding protein [Syntrophus aciditrophicus SB]
 gi|85722647|gb|ABC77590.1| istB-like ATP binding protein [Syntrophus aciditrophicus SB]
          Length = 255

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 20/111 (18%)

Query: 67  VILVGPSGSGKSCLANIW---SDKSRSTRFSNIAKSLDSILIDTRK-------------- 109
           V+L GPSG GK+ +A      + +         A  L  +L+  R               
Sbjct: 103 VLLCGPSGVGKTHIAQAIGHHACRLGHDVLFTKAVKLFRVLLAGRADQSWEKRMKRYLAP 162

Query: 110 -PVLLEDIDLLDFNDTQLFHIINSIHQY--DSSLLMTARTFPVSWGVCLPD 157
             ++++D  L   N  Q       I +    SS+++T+   P  W    PD
Sbjct: 163 DLLIIDDFGLSALNPLQAEDFYEIIAERYLRSSIIITSNRPPQDWLPLFPD 213


>gi|19553593|ref|NP_601595.1| DNA-binding HTH domain-containing protein [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391237|ref|YP_226639.1| ATP-dependent transcription regulator LuxR [Corynebacterium
           glutamicum ATCC 13032]
 gi|21325165|dbj|BAB99787.1| DNA-binding HTH domains [Corynebacterium glutamicum ATCC 13032]
 gi|41326577|emb|CAF21059.1| ATP-dependent transcriptional regulator, LuxR family
           [Corynebacterium glutamicum ATCC 13032]
          Length = 687

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            R +++ GP G  K      ++ +      +   K      I     V+++D+ L D +D
Sbjct: 27  GRFLVVTGPHGVNKEHFTREFAAELGEFEVNPFLKKRPRASI-----VVVDDVHLADKDD 81

Query: 124 TQLFHIINSIHQYDSSLLMTA--RTFPVSWGVCLPDL 158
            Q    +N +H    ++L TA  R    +  + LP L
Sbjct: 82  IQ--KTLNLVHTKGLTVLATAPHRIPGATDLLALPPL 116


>gi|71005074|ref|XP_757203.1| hypothetical protein UM01056.1 [Ustilago maydis 521]
 gi|46096565|gb|EAK81798.1| hypothetical protein UM01056.1 [Ustilago maydis 521]
          Length = 822

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 236 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 295

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 296 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNIVVMAATNRPNSID-- 353

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 354 -PALR-RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLADDV 393



 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G+GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 509 PSKGVLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 565


>gi|323509185|dbj|BAJ77485.1| cgd5_2010 [Cryptosporidium parvum]
 gi|323509813|dbj|BAJ77799.1| cgd5_2010 [Cryptosporidium parvum]
          Length = 690

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   S
Sbjct: 437 PSGVL-LYGPPGCGKTLLAKAIAKESGANFIS 467


>gi|241668070|ref|ZP_04755648.1| recombination factor protein RarA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876605|ref|ZP_05249315.1| recombination factor protein rarA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842626|gb|EET21040.1| recombination factor protein rarA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 412

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 29/193 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS---------NIAKSLDSILIDTRKPVLLEDID 117
           +IL G  G GK+ LA I +   R   F          ++ K +          + L++I 
Sbjct: 43  LILCGKPGVGKTTLAKIIASSKRLEFFELSAVDSGVKDVKKIIADNQHLGSFVLFLDEIH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
             + +   L        +    +L+  T              L SR     ++++   + 
Sbjct: 103 RFNKSQQDLLLPY---VESGKIILIGATTENPTYYLNNA---LVSR---VFILRLKRLNI 153

Query: 176 DFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
               K+I +      + A     ID  L   I    E       K+++ ++ + L     
Sbjct: 154 SETRKLIQRAITKDELLAKHSFEIDDDLYNAIHNYSE---GDCRKILNLLERMFLISDRT 210

Query: 230 ITRSLAAEVLKET 242
            T  L  ++    
Sbjct: 211 NTIHLDKDLFDRA 223


>gi|244790106|ref|NP_001156342.1| spastin isoform 1 [Mus musculus]
 gi|226694320|sp|Q9QYY8|SPAST_MOUSE RecName: Full=Spastin
          Length = 614

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 372 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 421


>gi|224005579|ref|XP_002291750.1| hypothetical protein THAPSDRAFT_35798 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972269|gb|EED90601.1| hypothetical protein THAPSDRAFT_35798 [Thalassiosira pseudonana
           CCMP1335]
          Length = 290

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           P R ++L GP GSGK+ LA   + ++           +  ++DS ++ +    +   +  
Sbjct: 47  PPRGILLHGPPGSGKTLLARAIAGEAGRSIGGVGSLGLGATVDSFVVCSGSDFVETYVGR 106

Query: 119 LDFNDTQLF 127
                  LF
Sbjct: 107 GAARVRALF 115


>gi|213024936|ref|ZP_03339383.1| DNA replication initiation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 35

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           R +      +D++D+ +++    +T     E+LK
Sbjct: 1   REMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 34


>gi|168071185|ref|XP_001787086.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659751|gb|EDQ48100.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 216

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 27/139 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +I  GP G+GK+ LA + +  +RS        +     +  ++   ++ +++++      
Sbjct: 57  LIFYGPPGTGKTTLAKVIARSTRSHFSELNAVTAGVADIRKVVEAAKERLVMDN------ 110

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + +L+ A T    + V  P L SR   + +  
Sbjct: 111 QRTTLFVDEIHRFNKSQQDALLPYVEEGTIILIGATTENPFFEVN-PALLSR---SQIFS 166

Query: 170 ISLPDDDFLEKVIVKMFAD 188
           +     + L +V+ +   D
Sbjct: 167 LQSLTHEELGQVMERALTD 185


>gi|108758416|ref|YP_633125.1| Holliday junction DNA helicase RuvB [Myxococcus xanthus DK 1622]
 gi|123074142|sp|Q1D2J8|RUVB_MYXXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|108462296|gb|ABF87481.1| Holliday junction DNA helicase RuvB [Myxococcus xanthus DK 1622]
          Length = 343

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 31/198 (15%)

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHII 130
           GP G GK+ LA+I +++           +L+           L+  D+L  ++    H +
Sbjct: 64  GPPGLGKTSLAHIIANELGVGIHVTSGPALERKGDLAGLLTNLDARDVLFIDEI---HRL 120

Query: 131 NSIHQ-------YDSSLLMTARTFPV--SWGVCLP----------------DLCSRLKAA 165
           N+  +        D  L +T  T P   +  + LP                 L  R +  
Sbjct: 121 NAAVEEYLYPAMEDFRLDITIDTGPAARAMKIDLPPFTLIGATTRTGLLTSPLRDRFQ-- 178

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLAL 224
              ++   D   LE ++ +      I +DK  A  +  R   +     +L+ ++ D   +
Sbjct: 179 IQERLEYYDAKALESILHRSARILGIPLDKDAAREVASRSRGTPRITNRLLRRLRDFAEV 238

Query: 225 SRGMGITRSLAAEVLKET 242
                IT  LA + L   
Sbjct: 239 EGNGRITLELAQKSLDRL 256


>gi|37360228|dbj|BAC98092.1| mKIAA1083 protein [Mus musculus]
          Length = 614

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 372 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 421


>gi|309388968|gb|ADO76848.1| Recombination protein MgsA [Halanaerobium praevalens DSM 2228]
          Length = 447

 Score = 42.1 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 80/204 (39%), Gaps = 39/204 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +I  GP G+GK+ LA + ++++ +        +   K +  ++   +    L +   + F
Sbjct: 54  LIFYGPPGTGKTSLAQVIANQTEADFVKLNAVTAGVKDIREVIKKAKSNRNLYNSKTILF 113

Query: 122 -NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            ++    H  N           +  + +++ A T    + V  P L SR   + + ++  
Sbjct: 114 IDEI---HRFNKSQQDALLPSVEKGTIIMIGATTENPYFEVNSP-LLSR---SRIFRLEK 166

Query: 173 PDDDFLEKVIVKMFADRQ-------IFIDKKLAAYI--VQRMERSLVFAEKLVDKMDNLA 223
            + D +  ++     +R+       I I  KL  +I  +   +     A   ++ ++   
Sbjct: 167 LNSDQIVLILKAALKNRKRGLGKLNIEIKPKLLNFIGQLANGD-----ARVALNTLELAV 221

Query: 224 LS---RGMGITRSLAAEVLKETQQ 244
           L+      GI   L   +++E+ Q
Sbjct: 222 LTTPPNKKGI-IKLTKTIIEESMQ 244


>gi|195327508|ref|XP_002030460.1| GM25452 [Drosophila sechellia]
 gi|194119403|gb|EDW41446.1| GM25452 [Drosophila sechellia]
          Length = 1006

 Score = 42.1 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92
             +E  V +++    WPSR               V+L GP G+GK+ L            
Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            S +A S +  +I  + P LL     +  ++  + ++ N        +L 
Sbjct: 771 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818


>gi|169614385|ref|XP_001800609.1| hypothetical protein SNOG_10333 [Phaeosphaeria nodorum SN15]
 gi|111061548|gb|EAT82668.1| hypothetical protein SNOG_10333 [Phaeosphaeria nodorum SN15]
          Length = 734

 Score = 42.1 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 253 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 312

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 313 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 370

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 371 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 410



 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 52/160 (32%), Gaps = 48/160 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PSR V+  GP G+GK+ LA   +++  +                   SNI    D     
Sbjct: 527 PSRGVLFYGPPGTGKTLLAKAVANECAANFISIKGPELLSMWFGESESNIRDIFDKARAA 586

Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
               V L+++D +  +                 QL   ++ +    +  ++ A   P   
Sbjct: 587 APCVVFLDELDSIAKSRGGSQGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 646

Query: 152 G--------------VCLPDLCSR---LKAATVVKISLPD 174
                          V LPDL SR   LKA        PD
Sbjct: 647 DNALCRPGRLDTLVYVPLPDLASRTSILKAQLRKTPVAPD 686


>gi|320163965|gb|EFW40864.1| vacuolar protein sorting factor 4B [Capsaspora owczarzaki ATCC
           30864]
          Length = 441

 Score = 42.1 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GKS LA   + ++++T FS
Sbjct: 164 PWRGILLYGPPGTGKSYLAKAVATEAQATFFS 195


>gi|320101277|ref|YP_004176869.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM
           2162]
 gi|319753629|gb|ADV65387.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM
           2162]
          Length = 730

 Score = 42.1 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 31/124 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + ++L GP G+GK+ LA   +++  +              +    + L  I    R  
Sbjct: 208 PPKGILLYGPPGTGKTLLAKALANEVNAYFITINGPEIMSKYYGESEQRLREIFKLARKK 267

Query: 109 -----KPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
                  + +++ID +    ++           QL  +++ +    + +++ A   P + 
Sbjct: 268 SKKNPAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLALMDGLESRGNVIVIAATNRPNAL 327

Query: 152 GVCL 155
              L
Sbjct: 328 DPAL 331



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G GK+ LA   + +S +   +
Sbjct: 488 PPKGVLLYGPPGCGKTLLAKAVATESGANFIA 519


>gi|281204612|gb|EFA78807.1| 26S protease regulatory subunit S10B [Polysphondylium pallidum
           PN500]
          Length = 493

 Score = 42.1 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     V+ E
Sbjct: 169 PPKGVLLYGPPGTGKTLLARAIASNLDANFLKVVSSAIVDKYIGESARVIRE 220


>gi|237740314|ref|ZP_04570795.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 2_1_31]
 gi|229422331|gb|EEO37378.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 2_1_31]
          Length = 338

 Score = 42.1 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 41/183 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + +++ ++         L+           LE+ D+L  ++   
Sbjct: 55  ILLYGPPGLGKTTLAGVIANEMQANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINS--------IHQYDSSLLMTARTFPV-SWGVCLP-----------DLCS---RLK 163
            H +N+          +     ++  +     S  + LP            L S   R +
Sbjct: 113 -HRLNNTVEEILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDR 171

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209
                K+   + D ++ +I++      + I ++              +A  +++R+ R  
Sbjct: 172 FGVSHKMEYYNIDEIKAIIIRGAKILGVKISEEGAIEISKRSRGTPRIANRLLKRV-RDY 230

Query: 210 VFA 212
              
Sbjct: 231 CEI 233


>gi|167041791|gb|ABZ06533.1| putative Holliday junction DNA helicase ruvB C-terminal domain
           [uncultured marine microorganism HF4000_093M11]
          Length = 354

 Score = 42.1 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 33/204 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FND 123
           V+L GP G GK+ LANI+   SR       A S   I        +L +++       ++
Sbjct: 71  VLLSGPPGLGKTTLANIF---SREMEVPLRATSGPVIERQGDLAAILTNLEPGTIFFIDE 127

Query: 124 TQLFHIINSIHQ-------YDSSLLMTARTFP--VSWGVCLPD------------LCS-- 160
               H +N + +        D +L +     P   +  + LP             L S  
Sbjct: 128 I---HRLNRVVEEVLYGAMEDFTLDIIIGEGPGARTVKIDLPHFTLVGATTRAGLLTSPL 184

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM- 219
           R +     +++  D + L+ +I++  +   I I ++ +  + +R   +   A +L+ +  
Sbjct: 185 RERFGIQFRLNFYDPEELKTIILRAASLLGIEIVEEASLELARRARGTPRIANRLLKRCR 244

Query: 220 DNLALSRGMGITRSLAAEVLKETQ 243
           D   +     IT  L    L++ +
Sbjct: 245 DFADMETSGVITLPLVVRSLEKMR 268


>gi|152997260|ref|YP_001342095.1| recombination factor protein RarA [Marinomonas sp. MWYL1]
 gi|150838184|gb|ABR72160.1| AAA ATPase central domain protein [Marinomonas sp. MWYL1]
          Length = 455

 Score = 42.1 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            IL GP G GK+  A + S    +     S +   +  I     +    + +  ++   T
Sbjct: 53  FILWGPPGVGKTTFAQLLSHALDAQFIEISAVMSGVKEIRAAVDQA---KQLRAMNGTQT 109

Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N           +  + L +  T              L SR   A V ++
Sbjct: 110 VLFVDEVHRFNKSQQDAFLPFIEDGTFLFIGATTENPAFELNSA---LLSR---ARVYRL 163

Query: 171 SLPDDDFLEKVIVKMFAD 188
             P  + +++V+V+   D
Sbjct: 164 KTPSVEDVKQVLVRALQD 181


>gi|330506537|ref|YP_004382965.1| AAA family ATPase [Methanosaeta concilii GP-6]
 gi|328927345|gb|AEB67147.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6]
          Length = 723

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 73/197 (37%), Gaps = 49/197 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSIL----IDTRKP 110
           V+L GP G+GK+ LA   + ++ +              +    + L  +           
Sbjct: 215 VLLYGPPGTGKTLLAKALASETNAHFETLSGPEIMSKYYGESEEKLRQLFKTAEEQAPSI 274

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP---------- 148
           +L+++ID +                 QL  +++ +      +++ A   P          
Sbjct: 275 ILIDEIDSIAPKREEVTGEVERRVVAQLLALMDGMETRGKVVVIAATNRPDSIDPALRRP 334

Query: 149 ----VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQ 203
                   + +P+  SRL+   V++I        + V  + FAD    F+   LAA  + 
Sbjct: 335 GRFDREIEIGVPNRQSRLE---VLQIHTRGMPLAKDVNQEKFADVTHGFVGADLAA--LA 389

Query: 204 RMERSLVFAEKLVDKMD 220
           R E ++    +++ ++D
Sbjct: 390 R-EAAMRAIRRVLPEID 405



 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P R ++L GP G+GK+ LA   + +S++   S                 + ++       
Sbjct: 484 PPRGILLYGPPGTGKTMLAKAVATESQANFISIKGPEFLSKWVGESEKAVRETFRKARQA 543

Query: 107 TRKPVLLEDIDLLD 120
               V L++ID + 
Sbjct: 544 APSVVFLDEIDSIA 557


>gi|300214751|gb|ADJ79167.1| ATPase, AAA family [Lactobacillus salivarius CECT 5713]
          Length = 423

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 73/198 (36%), Gaps = 32/198 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIA--------KSLDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A        + ++         +LL++I 
Sbjct: 41  MILYGPPGTGKTSIASAIAGSTKYAFRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIH 100

Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L          H+     +    +L+ A T      +  P + SR     + ++   ++
Sbjct: 101 RLTKPKQDFLLPHL-----EDGHIILIGATTENPYISIN-PAIRSR---TQIFEVHPLNE 151

Query: 176 DFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           D + + I +   D+        + I+      +      +       ++ ++  A S   
Sbjct: 152 DDIIQAINRAITDKDDGLGELPLQINDDAMHQLAIA---THGDLRSALNALELAAKSTPK 208

Query: 229 GI--TRSLAAEVLKETQQ 244
                  L  E+++E  Q
Sbjct: 209 NSEGNIVLTLEIIEECMQ 226


>gi|302508151|ref|XP_003016036.1| hypothetical protein ARB_05433 [Arthroderma benhamiae CBS 112371]
 gi|291179605|gb|EFE35391.1| hypothetical protein ARB_05433 [Arthroderma benhamiae CBS 112371]
          Length = 461

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%)

Query: 45  VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
           V    +Q   L+++  WP              P   ++  GP G+GK+ LA   + ++ +
Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267

Query: 91  TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122
           T        L  + I     ++                ++++D +               
Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 327

Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178
              +  ++N        D   ++ A          L  L S RL     ++  LP+++  
Sbjct: 328 QRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 383

Query: 179 EKVIVKMFADRQIFIDKKL 197
            +++      R++ +D K+
Sbjct: 384 AQIL--RIHSRKMTVDDKV 400


>gi|300767183|ref|ZP_07077095.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308180402|ref|YP_003924530.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|300495002|gb|EFK30158.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045893|gb|ADN98436.1| replication-associated recombination protein A [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 449

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 22/155 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLD-- 120
             +I  GP G GK+ LA I + +++S    FS +   +  I     +     D       
Sbjct: 52  PSLIFWGPPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIV 111

Query: 121 -FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
             ++    H  N           +  S  L+ A T   S+ +    L SR K   V+K  
Sbjct: 112 FIDEI---HRFNKAQQDAFLPYVERGSITLIGATTENPSFEINAA-LLSRCK-VLVLKAL 166

Query: 172 LPD--DDFLEKVIV--KMFADRQIFIDKKLAAYIV 202
            PD  +  L+  +   K F D +I +       I 
Sbjct: 167 TPDALEAVLQGALQNPKGFPDLEITMQPDTLRLIA 201


>gi|227823319|ref|YP_002827291.1| Holliday junction DNA helicase RuvB [Sinorhizobium fredii NGR234]
 gi|227342320|gb|ACP26538.1| holliday junction DNA helicase RuvB [Sinorhizobium fredii NGR234]
          Length = 349

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 43/264 (16%)

Query: 4   MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDD---LLVHSAIEQAVRLIDSWP 60
           M E      P+K+  D       Q           +R +    +  +        +D   
Sbjct: 4   MTEAARLIAPEKRGEDLDATLRPQ-SLDEFTGQAEARANLKIFIEAARNRG--EALDH-- 58

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
                 V+ VGP G GK+ LA I + +      S     +            LE+ D+L 
Sbjct: 59  ------VLFVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLF 112

Query: 121 FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAA 165
            ++    H +N   +        D  L +     P +  V + DL         +RL   
Sbjct: 113 IDEI---HRLNPAVEEILYPAMEDFQLDLIIGEGPAARSVKI-DLAKFTLVAATTRLGLL 168

Query: 166 TV---------VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
           T          V+++    + LE ++ +      + +  + A  I +R   +   A +L+
Sbjct: 169 TTPLRDRFGIPVRLNFYTVEELELIVRRGARLMGLGMTDEGAREIARRARGTPRIAGRLL 228

Query: 217 DKM-DNLALSRGMGITRSLAAEVL 239
            ++ D   ++R   +TR +A E L
Sbjct: 229 RRVRDFAEVARAEAVTRQIADEAL 252


>gi|222151512|ref|YP_002560668.1| hypothetical protein MCCL_1265 [Macrococcus caseolyticus JCSC5402]
 gi|222120637|dbj|BAH17972.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 419

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 39/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G GK+ +A   +  +     + + +  +   + +   +        +LL++I 
Sbjct: 41  MILYGPPGIGKTSIAQAIAGSTNLKFRQLNAVTNTKKDMQLIAEEAKMSGQVILLLDEIH 100

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            LD    D  L H+     +  S +L+  T      +     P + SR     + ++   
Sbjct: 101 RLDKGKQDFLLPHL-----EKGSIILIGATTSNPYHAIN---PAIRSR---TQIFELYPH 149

Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225
            D  +++ + +   D       + + ID    ++ VQ    S        ++ ++   LS
Sbjct: 150 GDKEVKQALTRALNDDVNGYGKKDVKIDDDAVSHFVQ----SAAGDIRTALNALELAVLS 205

Query: 226 RGMG---ITRSLAAEVLKE 241
                  IT   A + L++
Sbjct: 206 AQGDPVHITLQDAKDCLQK 224


>gi|28392844|ref|NP_786906.1| putative NTPase protein [Canine calicivirus]
          Length = 356

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
           +IL GP+G GK+ LA   +++  + + S +  ++D     T   V + D
Sbjct: 151 IILTGPAGCGKTTLAYAIANRLSAQKPSVLNLNIDHHDAYTGNEVCIID 199


>gi|50344782|ref|NP_001002064.1| 26S protease regulatory subunit 6A [Danio rerio]
 gi|47938854|gb|AAH71390.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Danio
           rerio]
          Length = 404

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++ +
Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRD 235


>gi|27881466|ref|NP_777373.1| non-structural polyprotein [Canine calicivirus]
 gi|55583961|sp|Q8V736|POLG_CACV4 RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein
           p18; Contains: RecName: Full=Protein p32; Contains:
           RecName: Full=NTPase; AltName: Full=p39; Contains:
           RecName: Full=Protein p30; Contains: RecName: Full=Viral
           genome-linked protein; AltName: Full=VPg; AltName:
           Full=p13; Contains: RecName: Full=Protease-polymerase;
           Short=Pro-Pol
 gi|18149158|dbj|BAB83601.1| non-structural polyprotein [Canine calicivirus]
          Length = 1929

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
           +IL GP+G GK+ LA   +++  + + S +  ++D     T   V + D
Sbjct: 619 IILTGPAGCGKTTLAYAIANRLSAQKPSVLNLNIDHHDAYTGNEVCIID 667


>gi|294501381|ref|YP_003565081.1| holliday junction DNA helicase RuvB [Bacillus megaterium QM B1551]
 gi|294351318|gb|ADE71647.1| holliday junction DNA helicase RuvB [Bacillus megaterium QM B1551]
          Length = 333

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 29/202 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLATIIANEMGVQIRTTSGPAIERPGDLAAVLTSLEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD---------------LCS--RL 162
            H +N   +        D  L +     P +  V L D               L S  R 
Sbjct: 114 -HRLNRSVEEVLYPAMEDFCLDIVIGKGPSARSVRL-DLPPFTLVGATTRAGLLSSPLRD 171

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DN 221
           +   + ++    ++ L  ++ +  A   + ID+K    + +R   +   A +L+ ++ D 
Sbjct: 172 RFGVLSRLEYYQEEDLASIVERTAAILDVEIDEKATFEMARRARGTPRIANRLLRRVRDF 231

Query: 222 LALSRGMGITRSLAAEVLKETQ 243
             +     IT  LA E L+  Q
Sbjct: 232 AQVKGDGAITERLANEALEMLQ 253


>gi|227891074|ref|ZP_04008879.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
           ATCC 11741]
 gi|227866948|gb|EEJ74369.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius
           ATCC 11741]
          Length = 416

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 73/198 (36%), Gaps = 32/198 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIA--------KSLDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A        + ++         +LL++I 
Sbjct: 34  MILYGPPGTGKTSIASAIAGSTKYAFRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIH 93

Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L          H+     +    +L+ A T      +  P + SR     + ++   ++
Sbjct: 94  RLTKPKQDFLLPHL-----EDGHIILIGATTENPYISIN-PAIRSR---TQIFEVHPLNE 144

Query: 176 DFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           D + + I +   D+        + I+      +      +       ++ ++  A S   
Sbjct: 145 DDIIQAINRAITDKDDGLGELPLQINDDAMHQLAIA---THGDLRSALNALELAAKSTPK 201

Query: 229 GI--TRSLAAEVLKETQQ 244
                  L  E+++E  Q
Sbjct: 202 NSEGNIVLTLEIIEECMQ 219


>gi|222099137|ref|YP_002533705.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga neapolitana DSM 4359]
 gi|221571527|gb|ACM22339.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga neapolitana DSM 4359]
          Length = 599

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 69/168 (41%), Gaps = 27/168 (16%)

Query: 67  VILVGPSGSGKS----CLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVL-L 113
            IL GP GSGK+     L   ++ +           +   ++ K  + +    +K +L L
Sbjct: 45  AILYGPPGSGKTSVFSLLKRYFNGEVVYLSSTVHGVSEIKSVLKRGEQMKRYGKKLLLFL 104

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++I  L+ N   +   H+     +    +L+   T   S+ V +P L SR     ++   
Sbjct: 105 DEIHRLNKNQQAVLVTHV-----ERGDIILVATTTENPSFAV-IPALLSR---CKILYFK 155

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
              ++ L +++ K      + +D  +   +V+  E     A +L++ +
Sbjct: 156 PLSENDLLEIVEKAVKKLNMKLDDDVKKALVRNAE---GDARRLLNTL 200


>gi|45190341|ref|NP_984595.1| AEL265Wp [Ashbya gossypii ATCC 10895]
 gi|44983237|gb|AAS52419.1| AEL265Wp [Ashbya gossypii ATCC 10895]
          Length = 431

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 160 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSISSSDLVSKWMGESERLV---------- 209

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   S++ 
Sbjct: 210 -KQLF---NMARENKPSIIF 225


>gi|18312110|ref|NP_558777.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum
           str. IM2]
 gi|18159541|gb|AAL62959.1| AAA family ATPase, possible cell division control protein cdc48
           [Pyrobaculum aerophilum str. IM2]
          Length = 731

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 71/203 (34%), Gaps = 37/203 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + ++L+GP G+GK+ LA   ++++ +   +                 L  I  + +  
Sbjct: 212 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 271

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 272 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDA---V 328

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L    +    + I+ PD     +++  +   R + +   +    +  M      A+ 
Sbjct: 329 DPALRRPGRFDREIWINPPDFKGRYEIL--LIHTRNMPLAPDVDLRKLAEMTHGFSGAD- 385

Query: 215 LVDKMDNLAL--SRGMGITRSLA 235
            +  +   A   +    I   L 
Sbjct: 386 -LAALAREAAMSALRRAIQSGLI 407



 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + ++L GP G+GK+ LA   + +S +   +     +                    + 
Sbjct: 487 PPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMA 546

Query: 107 TRKPVLLEDIDLLD 120
               V +++ID L 
Sbjct: 547 APAVVFIDEIDALA 560


>gi|67900534|ref|XP_680523.1| hypothetical protein AN7254.2 [Aspergillus nidulans FGSC A4]
 gi|74680687|sp|Q5AWS6|CDC48_EMENI RecName: Full=Cell division control protein 48
 gi|40741970|gb|EAA61160.1| hypothetical protein AN7254.2 [Aspergillus nidulans FGSC A4]
          Length = 827

 Score = 42.1 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 262 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 321

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 322 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 381

Query: 155 L 155
           L
Sbjct: 382 L 382


>gi|332375729|gb|AEE63005.1| unknown [Dendroctonus ponderosae]
          Length = 721

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D +L+    
Sbjct: 322 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGA 364


>gi|308177757|ref|YP_003917163.1| AFG1-like ATPase [Arthrobacter arilaitensis Re117]
 gi|307745220|emb|CBT76192.1| AFG1-like ATPase [Arthrobacter arilaitensis Re117]
          Length = 346

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA++W               +     ++      ++     V +++
Sbjct: 83  IYLDGGFGVGKTHLLASLWHAAPGRKAFGTFVEYTNLVGALSFRQTVEVLSQYSLVCIDE 142

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
            +L D  DT L   ++  +      L  T+ T P + G
Sbjct: 143 FELDDPGDTVLMSRLMRELSDAGVKLAATSNTLPGALG 180


>gi|45384432|ref|NP_990289.1| 26S protease regulatory subunit 4 [Gallus gallus]
 gi|2492516|sp|Q90732|PRS4_CHICK RecName: Full=26S protease regulatory subunit 4; Short=P26s4;
           AltName: Full=26S proteasome AAA-ATPase subunit RPT2;
           AltName: Full=Proteasome 26S subunit ATPase 1
 gi|1399943|gb|AAC60013.1| 26S ATPase complex subunit 4 [Gallus gallus]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E        
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE-------- 269

Query: 123 DTQLFHIINSIHQYDSSLLM 142
                 +     ++  S++ 
Sbjct: 270 ------LFRVAEEHGPSIVF 283


>gi|89068036|ref|ZP_01155453.1| ATP-dependent metalloprotease FtsH [Oceanicola granulosus HTCC2516]
 gi|89046275|gb|EAR52332.1| ATP-dependent metalloprotease FtsH [Oceanicola granulosus HTCC2516]
          Length = 635

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 190 ALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 249

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++     +  +++ A   P      L
Sbjct: 250 VFIDEIDAVGRSRGVGYGGGNDEREQTLNQLLVEMDGFEANEGIIIVAATNRPDVLDPAL 309

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V++  PD    EK++      R++ +   +   I+ R       A
Sbjct: 310 ------LRPGRFDRQVQVPNPDIKGREKILGVHA--RKVPLGPDVDLRIIARGTPGFSGA 361

Query: 213 EKLVDKMDNLALSRGMGITRSLA 235
             L + ++  AL     + R   
Sbjct: 362 -DLANLVNEAALMAAR-VGRRFV 382


>gi|66809787|ref|XP_638617.1| 26S proteasome ATPase 3 subunit [Dictyostelium discoideum AX4]
 gi|74996886|sp|Q54PN7|PRS6A_DICDI RecName: Full=26S protease regulatory subunit 6A homolog; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT5; AltName:
           Full=Proteasome 26S subunit ATPase 3; AltName:
           Full=Tat-binding protein 1; Short=TBP-1
 gi|60467222|gb|EAL65256.1| 26S proteasome ATPase 3 subunit [Dictyostelium discoideum AX4]
          Length = 421

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + ++ ST        L  + I     ++          
Sbjct: 201 PPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 260

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +       +  ++ A       
Sbjct: 261 GPTIIFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDIL 320

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  LP+++    ++      R++ +   +    + R      
Sbjct: 321 DPAL--LRSGRLD--RKIEFPLPNEEARAHILQ--IHSRKMNVSADVNFDELARSSEDFN 374

Query: 211 FAE 213
            A+
Sbjct: 375 GAQ 377


>gi|300172649|ref|YP_003771814.1| chromosome segregation helicase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887027|emb|CBL90995.1| Chromosome segregation helicase (Putative) [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 428

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   K      +    S   + I   +        +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSSKYAFRMLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L+    D  L H+     +  + +L+ A T      V  P + SR     + ++    +
Sbjct: 102 RLNKIKQDFLLPHL-----ESGAIILIGATTENPYINVT-PAIRSR---TQIFQVMPLTE 152

Query: 176 DFLEKVIVKMFADR 189
           + ++  + +   D+
Sbjct: 153 NDIKIAVKRALEDK 166


>gi|284162725|ref|YP_003401348.1| 26S proteasome subunit P45 family [Archaeoglobus profundus DSM
           5631]
 gi|284012722|gb|ADB58675.1| 26S proteasome subunit P45 family [Archaeoglobus profundus DSM
           5631]
          Length = 407

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   ++K+++T    +        I     ++ E  +L 
Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVANKTKATFIRVVGSEFVQKYIGEGARLVREVFELA 240


>gi|62858271|ref|NP_001016453.1| spastin [Xenopus (Silurana) tropicalis]
 gi|89272836|emb|CAJ82090.1| spastin [Xenopus (Silurana) tropicalis]
          Length = 571

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 329 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 378


>gi|150390103|ref|YP_001320152.1| Holliday junction DNA helicase B [Alkaliphilus metalliredigens
           QYMF]
 gi|172052478|sp|A6TQM5|RUVB_ALKMQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|149949965|gb|ABR48493.1| Holliday junction DNA helicase RuvB [Alkaliphilus metalliredigens
           QYMF]
          Length = 336

 Score = 42.1 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 27/201 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LANI +++           +++           L   D+L  +
Sbjct: 56  PLDHVLLYGPPGLGKTTLANIIANEMNVNIKITSGPAIERPGDLAAILTNLAANDVLFID 115

Query: 123 DTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLP--------------DLCS- 160
           +    H +N   +        D +L +     P +  + L                L S 
Sbjct: 116 EI---HRLNRTVEEVLYPAMEDFALDIIIGKGPSARSIRLDLSQFTLIGATTRAGQLSSP 172

Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            R +   + K+ L ++  L  ++ +       +ID + A  I  R   +   A +L+ ++
Sbjct: 173 LRDRFGVICKLELYNNKQLTAIVKRSARILDAYIDDEGATEIASRSRGTPRIANRLLRRV 232

Query: 220 -DNLALSRGMGITRSLAAEVL 239
            D   +     IT+ +A E L
Sbjct: 233 RDYAQVKSDGRITKRVAEEAL 253


>gi|321458492|gb|EFX69559.1| hypothetical protein DAPPUDRAFT_202764 [Daphnia pulex]
          Length = 697

 Score = 42.1 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D IL+    
Sbjct: 294 VLLVGPPGTGKTLLARAVAGEAGVPYFHAAGPEFDEILVGQGA 336


>gi|320591119|gb|EFX03558.1| cell division control protein cdc48 [Grosmannia clavigera kw1407]
          Length = 828

 Score = 42.1 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 258 PPRGVLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 317

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 318 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 377

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    V I +PD     +++      + + +   +
Sbjct: 378 LR----RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 415



 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           PSR V+  GP G+GK+ LA   +++  +   S     L
Sbjct: 532 PSRGVLFYGPPGTGKTLLAKAVANECAANFISVKGPEL 569


>gi|320583346|gb|EFW97561.1| DNA replication ATPase [Pichia angusta DL-1]
          Length = 769

 Score = 42.1 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 72/216 (33%), Gaps = 48/216 (22%)

Query: 65  RVVILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSI------------LIDTRKP 110
             +IL G  G+GK+ LA I   + KSR    S  +  +               L      
Sbjct: 379 PSLILWGYPGTGKTTLARIISHATKSRFIELSATSNGISDCKRVFEEARNEYKLTKRHTI 438

Query: 111 VLLEDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAAT 166
           V +++I   +     +F  H+     +  +  L+  T              L SR     
Sbjct: 439 VFIDEIHRFNKAQQDIFLPHV-----EKGTITLVGATTENPSFQLNSA---LLSR---CR 487

Query: 167 VVKISLPDDDFLEKVIVKMF----ADRQIF-------IDKKLAAYIVQRMERSLVFAEKL 215
           V  ++    D L K++ K        R++         +K+   YI    +     A  L
Sbjct: 488 VFVLNRLTSDELHKIVSKALLVINKTRKLVHNVPVLRFNKEAIGYICNIADGDSRSALNL 547

Query: 216 VDKMD-----NLALSRGM---GITRSLAAEVLKETQ 243
           ++  D     N +L +G     +      EVLK T 
Sbjct: 548 LELADSHFMTNYSLEQGKHVIEVNAEQLREVLKRTH 583


>gi|312285608|gb|ADQ64494.1| hypothetical protein [Bactrocera oleae]
          Length = 276

 Score = 42.1 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 173 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 224

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 225 ------MFNYARDHQ 233


>gi|210633172|ref|ZP_03297708.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279]
 gi|210159212|gb|EEA90183.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279]
          Length = 635

 Score = 42.1 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 45/142 (31%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R  +LVGP G+GK+ LA   + ++    FS        + +                   
Sbjct: 219 RGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAKEKAP 278

Query: 111 --VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW-- 151
             V +++ID +           ND       QL   ++        +++ A   P S   
Sbjct: 279 CIVFIDEIDTIGKKRDGGGFSGNDEREQTLNQLLTEMDGFDNQKGIVVLAATNRPDSLDA 338

Query: 152 ------------GVCLPDLCSR 161
                        V LPDL  R
Sbjct: 339 ALLRPGRFDRRVPVELPDLAGR 360


>gi|257059785|ref|YP_003137673.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|256589951|gb|ACV00838.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 646

 Score = 42.1 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 41/196 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L+GP G+GK+ LA   + ++                     S +    D         
Sbjct: 206 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIELFVGIGASRVRDLFDQAKTQAPCI 265

Query: 111 VLLEDIDL-----------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
           V ++++D            +  ND       QL   ++        +L+ A   P     
Sbjct: 266 VFIDELDALGKSRANMGGMIGGNDEREQTLNQLLAEMDGFDPNTGVILLAATNRPEVLDP 325

Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L  L   R     VV    PD    E ++     D ++  D  L   +  R       A
Sbjct: 326 AL--LRPGRFDRQIVV--DRPDKSGREAILRVHAHDVRLAPDVDL-DKLAARTP-GFAGA 379

Query: 213 EKLVDKMDNLALSRGM 228
             L + ++  AL    
Sbjct: 380 -DLANLINEAALLAAR 394


>gi|218246744|ref|YP_002372115.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|218167222|gb|ACK65959.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
          Length = 646

 Score = 42.1 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 41/196 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L+GP G+GK+ LA   + ++                     S +    D         
Sbjct: 206 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIELFVGIGASRVRDLFDQAKTQAPCI 265

Query: 111 VLLEDIDL-----------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
           V ++++D            +  ND       QL   ++        +L+ A   P     
Sbjct: 266 VFIDELDALGKSRANMGGMIGGNDEREQTLNQLLAEMDGFDPNTGVILLAATNRPEVLDP 325

Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L  L   R     VV    PD    E ++     D ++  D  L   +  R       A
Sbjct: 326 AL--LRPGRFDRQIVV--DRPDKSGREAILRVHAHDVRLAPDVDL-DKLAARTP-GFAGA 379

Query: 213 EKLVDKMDNLALSRGM 228
             L + ++  AL    
Sbjct: 380 -DLANLINEAALLAAR 394


>gi|170692566|ref|ZP_02883728.1| AAA ATPase [Burkholderia graminis C4D1M]
 gi|170142222|gb|EDT10388.1| AAA ATPase [Burkholderia graminis C4D1M]
          Length = 466

 Score = 42.1 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 35  CLGISRDDLLVHSAI-EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
            +  +  D +   ++ + AV  +++      R V+L GP+GSGK+ LA       R    
Sbjct: 156 DVRAAFADFIGDMSLLDSAVAALNA-----GRPVMLYGPAGSGKTYLAERLGSLLRGAVP 210

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
              A  +   +I    P++ +D +     
Sbjct: 211 VPYALYVAGDVIQLHDPLIHKDAEPGALP 239


>gi|294495737|ref|YP_003542230.1| ATPase AAA [Methanohalophilus mahii DSM 5219]
 gi|292666736|gb|ADE36585.1| AAA family ATPase, CDC48 subfamily [Methanohalophilus mahii DSM
           5219]
          Length = 761

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 74/211 (35%), Gaps = 57/211 (27%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   +++S +   S                ++ +  +    +    
Sbjct: 250 VLLQGPPGTGKTMLARAVANESDAYFISINGPEIMSKFYGESEQHLRQLFEDAEANAPSI 309

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP-- 156
           + L++ID +                 QL  +++ + +  + +++ A   P +  + L   
Sbjct: 310 IFLDEIDSIAPKRAEVTGEVERRVVSQLLSLMDGLKERKNVIVIGATNRPGALDMALRRP 369

Query: 157 ---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-------AAYIVQRME 206
              D          +++ +PD D   +++      R + + + +         Y     +
Sbjct: 370 GRFD--------REIELRVPDTDGRLEILQ--IHTRGMPVTEDVNLEELADITYGFVGAD 419

Query: 207 -----RS--LVFAEKLVDKMDNLALSRGMGI 230
                R   +    +++ ++D  A      I
Sbjct: 420 IAALCREAAMSSLRRILPEIDLKAEQIPREI 450


>gi|296815108|ref|XP_002847891.1| vacuolar protein sorting-associated protein 4 [Arthroderma otae CBS
           113480]
 gi|238840916|gb|EEQ30578.1| vacuolar protein sorting-associated protein 4 [Arthroderma otae CBS
           113480]
          Length = 434

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIVF 229


>gi|171685948|ref|XP_001907915.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942935|emb|CAP68588.1| unnamed protein product [Podospora anserina S mat+]
          Length = 824

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 257 PPRGVLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 316

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 317 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 374

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 375 -PALR-RFGRFDREVDIGVPDPTGRLEILQ--IHTKNMKLGDDV 414


>gi|119025603|ref|YP_909448.1| recombination factor protein RarA [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154487065|ref|ZP_02028472.1| hypothetical protein BIFADO_00903 [Bifidobacterium adolescentis
           L2-32]
 gi|118765187|dbj|BAF39366.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
 gi|154084928|gb|EDN83973.1| hypothetical protein BIFADO_00903 [Bifidobacterium adolescentis
           L2-32]
          Length = 466

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 37/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ LA I + +S          ++  K +  +L    + ++ E  + + F
Sbjct: 62  IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLKRAHERLVSEGKETVLF 121

Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            D     +         +LL          + A T   S+ V  P L SR   + VVK+ 
Sbjct: 122 IDE----VHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVKLE 173

Query: 172 LPDDDFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS- 225
             + D L+ +I +  A     D +I I  +    I+ RM  +   A K +  ++  A + 
Sbjct: 174 SLEPDDLKTLINRAIASEHGLDNEIRITDEAVDEII-RM--AGGDARKTLTILEAAAGAL 230

Query: 226 -----RGMGITRSLA 235
                R  G  R + 
Sbjct: 231 TGDKERKKGAKRPII 245


>gi|328718995|ref|XP_001946697.2| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog
           [Acyrthosiphon pisum]
          Length = 710

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D IL+    
Sbjct: 310 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGSEFDEILVGQGA 352


>gi|327307154|ref|XP_003238268.1| 26S protease regulatory subunit 6A [Trichophyton rubrum CBS 118892]
 gi|326458524|gb|EGD83977.1| 26S protease regulatory subunit 6A [Trichophyton rubrum CBS 118892]
          Length = 461

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%)

Query: 45  VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
           V    +Q   L+++  WP              P   ++  GP G+GK+ LA   + ++ +
Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267

Query: 91  TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122
           T        L  + I     ++                ++++D +               
Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 327

Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178
              +  ++N        D   ++ A          L  L S RL     ++  LP+++  
Sbjct: 328 QRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 383

Query: 179 EKVIVKMFADRQIFIDKKL 197
            +++      R++ +D K+
Sbjct: 384 AQIL--RIHSRKMTVDDKV 400


>gi|307637117|gb|ADN79567.1| ATPase [Helicobacter pylori 908]
 gi|325995708|gb|ADZ51113.1| ATPase [Helicobacter pylori 2018]
 gi|325997304|gb|ADZ49512.1| putative recombination factor protein [Helicobacter pylori 2017]
          Length = 391

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 21/179 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLE 114
                 GP G GK+ LA I +        S  A       +            +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
              L+++  K  A  +  I+     Y++     S   A  L++ +D L+      IT  
Sbjct: 151 KSDLDRLCDKALALLKKQIESGAKTYLLNN---STGDARALLNLLD-LSAKIENPITLK 205


>gi|312194201|ref|YP_004014262.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
 gi|311225537|gb|ADP78392.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
          Length = 718

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 39/208 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 194 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 253

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 254 IFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 313

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L   R     VV    PD     + I+K+ A +   I   +   ++ R       A  
Sbjct: 314 --LRPGRFDRQIVV--DRPD-LLGREAILKVHA-KGKPIGPDVDLLVIARRTPGFTGA-D 366

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
           L + ++  AL       + +++++L+E+
Sbjct: 367 LANVLNEAALLAARADQKMISSDLLEES 394


>gi|240273684|gb|EER37204.1| 26S protease regulatory subunit 6A-B [Ajellomyces capsulatus H143]
 gi|325087581|gb|EGC40891.1| 26S protease regulatory subunit 6A-B [Ajellomyces capsulatus H88]
          Length = 464

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 250 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 310 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--L 367

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 368 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 403


>gi|186489067|ref|NP_001117440.1| 26S proteasome regulatory complex subunit p42D, putative
           [Arabidopsis thaliana]
 gi|332193952|gb|AEE32073.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 335

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E        
Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 223

Query: 123 DTQLFHIINSIHQYD 137
                 + N   ++ 
Sbjct: 224 ------MFNYAREHQ 232


>gi|158340071|ref|YP_001521241.1| transposase-associated IstB-like ATP-binding protein [Acaryochloris
           marina MBIC11017]
 gi|158310312|gb|ABW31927.1| transposase-associated IstB-like ATP-binding protein [Acaryochloris
           marina MBIC11017]
          Length = 262

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R +IL GP G+GK+ L    + K+    F+    +  +++ D R                
Sbjct: 97  RSLILEGPPGTGKTHLCVSIAYKAIQNGFTARFTTATALINDLRVAHDLNLALKPYLQPN 156

Query: 111 -VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            ++++++  L +       LF +++  +     +L T       WG  L D
Sbjct: 157 VLVIDEMGYLGYGPGAADVLFQVVDQRYLKGKPILFTTNKPLKHWGRVLHD 207


>gi|145591861|ref|YP_001153863.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145283629|gb|ABP51211.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum arsenaticum DSM
           13514]
          Length = 737

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 28/116 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + ++L+GP G+GK+ LA   ++++ +              +      L  I  + +  
Sbjct: 209 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 268

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150
               + +++ID +                 QL  +++ + +    +++ A   P +
Sbjct: 269 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVVVIGATNRPDA 324



 Score = 37.1 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G GK+  A   + +S +   +     L
Sbjct: 497 PPKGILLFGPPGVGKTLFAKAVATESGANFIAVRGPEL 534


>gi|90962054|ref|YP_535970.1| recombination factor protein RarA [Lactobacillus salivarius UCC118]
 gi|90821248|gb|ABD99887.1| ATPase, AAA family [Lactobacillus salivarius UCC118]
          Length = 423

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIA--------KSLDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A        + ++         +LL++I 
Sbjct: 41  MILYGPPGTGKTSIASAIAGSTKYAFRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIH 100

Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L          H+     +    +L+ A T      +  P + SR     + ++   ++
Sbjct: 101 RLTKPKQDFLLPHL-----EDGHIILIGATTENPYISIN-PAIRSR---TQIFEVHPLNE 151

Query: 176 DFLEKVIVKMFADR 189
           D + + I +   D+
Sbjct: 152 DDIIQAINRAITDK 165


>gi|66046406|ref|YP_236247.1| recombination factor protein RarA [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257113|gb|AAY38209.1| AAA ATPase, central region [Pseudomonas syringae pv. syringae
           B728a]
 gi|330972888|gb|EGH72954.1| recombination factor protein RarA [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +   +  A       I     V  +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLAKLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      RQ+ +  +  A ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRQLTLSDEGFAILMSAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDVGLLQSLLGDSRR 239


>gi|308063282|gb|ADO05169.1| recombination factor protein RarA [Helicobacter pylori Sat464]
          Length = 391

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|295396913|ref|ZP_06807037.1| AAA family ATPase [Aerococcus viridans ATCC 11563]
 gi|294974847|gb|EFG50550.1| AAA family ATPase [Aerococcus viridans ATCC 11563]
          Length = 423

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +           + +    ++   ++         +LL++I 
Sbjct: 44  MILYGPPGIGKTSIASAIAGSTKYAFRKLNAATDSKKDLQAVVEEAKFSGGIVLLLDEIH 103

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +     L+ A T         P + SR   A + ++   D+
Sbjct: 104 RLDKTKQDFLLPHL-----ESGLITLIGATTENPFINTS-PAIRSR---AQIFQLEPLDE 154

Query: 176 DFLEKVIVKMF--ADRQI 191
             ++  + +    +DR +
Sbjct: 155 ADIKIGLERALTDSDRGL 172


>gi|225560725|gb|EEH09006.1| vacuolar sorting-associated protein [Ajellomyces capsulatus G186AR]
          Length = 433

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 163 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 213 -KQLF---NMARESRPAIIF 228


>gi|224542189|ref|ZP_03682728.1| hypothetical protein CATMIT_01364 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524880|gb|EEF93985.1| hypothetical protein CATMIT_01364 [Catenibacterium mitsuokai DSM
           15897]
          Length = 436

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 74/202 (36%), Gaps = 38/202 (18%)

Query: 29  FFSFPRCLGISRDDL--------LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
            F+ P    +  D+L        LV    +   RLI++        +I  GP G GK+ L
Sbjct: 8   TFNEPLPSRLRPDNLDEFVGQTHLVGKG-KILRRLIETD---SISSMIFWGPPGVGKTTL 63

Query: 81  ANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
           A I +  + S+                 + ++ ++ +   +  + +++I   + +    F
Sbjct: 64  ARIIASHTHSSFIDFSAVTSGIKEIREVMKQAENNRVFGEKTILFVDEIHRFNKSQQDAF 123

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV---- 183
                  +  S +L+ A T   S+ +    L SR     V  ++  +++ +  ++     
Sbjct: 124 LPF---VEKGSIILIGATTENPSFEINGA-LLSR---CKVFVLNALEEEDIVSLLKHAIS 176

Query: 184 --KMFADRQIFIDKKLAAYIVQ 203
             K F + +I I       I  
Sbjct: 177 SPKGFGNMKIDISDDCLHLIAS 198


>gi|126322073|ref|XP_001368463.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform
           2 [Monodelphis domestica]
          Length = 677

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 32/140 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA I ++ S+      +  S  S          + D+     N+ 
Sbjct: 289 PSLILWGPPGCGKTTLAYIIANNSKKNSMRFVTLSATSAKTSD-----VRDVIKQAQNEK 343

Query: 125 QLF-----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             F           H  N   Q  S  +  A             L SR     V+ +   
Sbjct: 344 NFFKRKTILFIDEIHRFNKSQQNPSFQVNAA-------------LLSR---CRVIVLEKL 387

Query: 174 DDDFLEKVIVKMFADRQIFI 193
             + ++ ++++  +   + +
Sbjct: 388 SAEAMKTILMRAVSSLGLRV 407


>gi|26349529|dbj|BAC38404.1| unnamed protein product [Mus musculus]
          Length = 568

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQD 334


>gi|83590536|ref|YP_430545.1| Holliday junction DNA helicase RuvB [Moorella thermoacetica ATCC
           39073]
 gi|97190146|sp|Q2RHT7|RUVB_MOOTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83573450|gb|ABC20002.1| Holliday junction DNA helicase subunit RuvB [Moorella thermoacetica
           ATCC 39073]
          Length = 336

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 37/206 (17%)

Query: 67  VILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSILIDT----RKPVLLEDIDL 118
           V+L GP G GK+ LA I ++    + R T    + ++ D   I T    R  + +++I  
Sbjct: 57  VLLYGPPGLGKTTLAGIIANELGVQLRVTSGPALERAGDLAAILTNLQPRDVLFIDEIHR 116

Query: 119 LDFNDTQLFH------IINSIHQYDS-----------SLLMTARTFPVSWGVCLPD---L 158
           L     ++ +      +++ I                  L+ A T        L D   +
Sbjct: 117 LPRQVEEILYPAMEDFVLDIILGKGPGARSIRLDLPPFTLVGATTRAGLLSSPLRDRFGI 176

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SRL+   V ++          +I +     Q+ I+ + A  I +R   +   A +L+ +
Sbjct: 177 NSRLEFYQVAELEE--------IIRRAATILQVAIEPEGAREIARRARGTPRVANRLLKR 228

Query: 219 M-DNLALSRGMGITRSLAAEVLKETQ 243
           + D   +  G  ITR +A E L+  Q
Sbjct: 229 VRDYAEIRAGGVITREVAREALELLQ 254


>gi|116195742|ref|XP_001223683.1| hypothetical protein CHGG_04469 [Chaetomium globosum CBS 148.51]
 gi|88180382|gb|EAQ87850.1| hypothetical protein CHGG_04469 [Chaetomium globosum CBS 148.51]
          Length = 210

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 52  YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 111

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 112 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVIAATNRVDVLDPAL--L 169

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
            S RL     ++  LP+++   +++      R++ +D+    +
Sbjct: 170 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMKVDEATVNF 208


>gi|114562972|ref|YP_750485.1| recombination factor protein RarA [Shewanella frigidimarina NCIMB
           400]
 gi|114334265|gb|ABI71647.1| Recombination protein MgsA [Shewanella frigidimarina NCIMB 400]
          Length = 443

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 31/174 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++L GP G+GK+ LA + +  + +   R S +   +  I     +   +          T
Sbjct: 52  MLLWGPPGTGKTTLAELIAHYANAHVERISAVTSGVKDIRAAIEQAKAI---AQSRGQRT 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + + + A T   S+ +    L SR   A V  I+ 
Sbjct: 109 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYLINR 164

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
              D +  ++ +   D       RQ+ +   +A  +    + S   A K ++ +
Sbjct: 165 LSSDEINLIVTQALVDVERGLGKRQLILPADVAKQLA---DISDGDARKALNLL 215


>gi|326429214|gb|EGD74784.1| hypothetical protein PTSG_07017 [Salpingoeca sp. ATCC 50818]
          Length = 552

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 67/192 (34%), Gaps = 29/192 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R ++L GP G+GK+ +A+  ++ +    F+ +        +   +  +LE +     +
Sbjct: 276 PQRWLLLHGPHGTGKTAIAHALANSAG-LPFAALNMEGVDGYLGHSRAHVLEALLTAASD 334

Query: 123 DT--------------QLFHI-----INSIHQYDSSLLMTARTFPVSWGVCLPD-LCS-- 160
                            L H+      NS       LL  A  +P    +   D + S  
Sbjct: 335 LACKPTDNVTPGCAVVVLEHLEAIAGHNSATDAIVDLL-HADRWPNLILIATADTIGSLN 393

Query: 161 ----RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
               R  A  +  +  P+ D   ++I    ++ +  +        + R  R +   + + 
Sbjct: 394 AQVRRTFAMPMFCL-PPNKDSRRRLITLQLSNHRTGVSDVTLLRHLVRETRLMTVPDVIQ 452

Query: 217 DKMDNLALSRGM 228
              +  +++R  
Sbjct: 453 AATNAASIARAR 464


>gi|324006203|gb|EGB75422.1| transposase domain protein [Escherichia coli MS 57-2]
          Length = 162

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 24/115 (20%)

Query: 61  SW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------- 110
            W      V+L G SG GKS LA    D      +     S   +L + RK         
Sbjct: 7   DWVDAGENVLLFGASGLGKSHLAAAIVDGVVGQGYRARFYSAGELLQELRKARAQLKLNE 66

Query: 111 ----------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                     ++++D+  +  +  +   LF +I   ++   SL++T+      WG
Sbjct: 67  LLLKLDRYRVIVVDDLGYVKRDSAETGVLFELIAHRYERG-SLVITSNHPFSMWG 120


>gi|160945075|ref|ZP_02092301.1| hypothetical protein FAEPRAM212_02594 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442806|gb|EDP19811.1| hypothetical protein FAEPRAM212_02594 [Faecalibacterium prausnitzii
           M21/2]
          Length = 424

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 35/202 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112
             +I  GPSG+GK+ +A I ++ S  T                + K + ++       + 
Sbjct: 40  PNMIFYGPSGTGKTTVARIIAENSGMTLHKLNGTSCGTGDIKAVLKDIGTLAAAGGILLY 99

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-- 169
           L++I  L+      L   I    +  S  L+ + T    + +    L SR    TV +  
Sbjct: 100 LDEIQYLNKKQQQSLLECI----EDGSVTLIASTTENPYFYIYNA-LLSR---CTVFEFK 151

Query: 170 -ISLPD-DDFLEKVIVKMFADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            ++  D +  +   + ++    Q+ +  D+   AY+    E +     K +  +D    +
Sbjct: 152 PLAAADVERGVRNAVQRLSEGEQVPVCMDEDACAYLA---ESAGGDLRKALGCLDFAVTA 208

Query: 226 R-----GMGITRSLAAEVLKET 242
                    IT  +  +V + T
Sbjct: 209 APVENGEKRITLDMIRQVTRRT 230


>gi|113954265|ref|YP_731698.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CC9311]
 gi|113881616|gb|ABI46574.1| ATPase [Synechococcus sp. CC9311]
          Length = 733

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA I +  +R+   S  A       +  +     E ++      T L
Sbjct: 57  LILHGPPGVGKTTLARIIATHTRAQFSSLNAVLAGVKDLREQVDAAKERLERHGLR-TIL 115

Query: 127 F----HIINSIHQY 136
           F    H  NS  Q 
Sbjct: 116 FIDEVHRFNSAQQD 129


>gi|91086165|ref|XP_970259.1| PREDICTED: similar to GA17483-PA [Tribolium castaneum]
 gi|270009883|gb|EFA06331.1| hypothetical protein TcasGA2_TC009202 [Tribolium castaneum]
          Length = 716

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D IL+    
Sbjct: 311 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEILVGQGA 353


>gi|19115118|ref|NP_594206.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe 972h-]
 gi|74625010|sp|Q9P3U2|YKX4_SCHPO RecName: Full=Uncharacterized AAA domain-containing protein C328.04
 gi|8894855|emb|CAB95999.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe]
          Length = 741

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +SRS  FS  A SL S  +   + ++
Sbjct: 491 PARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLV 540


>gi|12841566|dbj|BAB25259.1| unnamed protein product [Mus musculus]
          Length = 556

 Score = 42.1 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 314 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 363


>gi|327310719|ref|YP_004337616.1| AAA family ATPase [Thermoproteus uzoniensis 768-20]
 gi|326947198|gb|AEA12304.1| AAA family ATPase, possible cell division control protein cdc48
           [Thermoproteus uzoniensis 768-20]
          Length = 730

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + ++L GP G+GK+ LA   ++++ +   +     +                D    +
Sbjct: 211 PPKGILLFGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEAKLREIFDEAKKN 270

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 271 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQIVVIGATNRPDA---V 327

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    + I+ PD     +++      R + +   +
Sbjct: 328 DPALRRPGRFDREIWINPPDFKGRLEILQ--IHTRNMPLSPDV 368



 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 486 PPKGILLFGPPGTGKTLLAKAVATESGANFIA 517


>gi|319899072|ref|YP_004159165.1| ATPase, AAA family [Bartonella clarridgeiae 73]
 gi|319403036|emb|CBI76591.1| ATPase, AAA family [Bartonella clarridgeiae 73]
          Length = 438

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 50  ASGSFSSMIFWGPPGTGKTTIARLLALETNFVFEQVSAIFTGISELKKIFEAA----QAR 105

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
           L+    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 106 LMSGYQTLLFIDEIHRFNRAQQDSFLPFMEDGTIILVGATTENPSFELNAA---LLSR-- 160

Query: 164 AATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D++ L+ ++ +      R + +D      +++  +     A  L +++  
Sbjct: 161 -ARVLTFRSHDNESLDTLLKRAEKAEGRSLPLDDHAREILIRVSDGDARVALTLAEEIWR 219

Query: 222 LA 223
           +A
Sbjct: 220 VA 221


>gi|317012260|gb|ADU82868.1| recombination factor protein RarA [Helicobacter pylori Lithuania75]
          Length = 391

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILWASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+++  K     +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDRLCDKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|294656475|ref|XP_458749.2| DEHA2D06688p [Debaryomyces hansenii CBS767]
 gi|199431503|emb|CAG86893.2| DEHA2D06688p [Debaryomyces hansenii]
          Length = 852

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   +++SR+   S
Sbjct: 576 PSGVL-LWGPPGCGKTLLAKAVANESRANFIS 606


>gi|195161040|ref|XP_002021378.1| GL25293 [Drosophila persimilis]
 gi|194118491|gb|EDW40534.1| GL25293 [Drosophila persimilis]
          Length = 1008

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92
             +E  V +++    WPSR               V+L GP G+GK+ L            
Sbjct: 725 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 772

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            S +A S +  +I  + P LL     +  ++  + ++ N        +L 
Sbjct: 773 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 820


>gi|168001966|ref|XP_001753685.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695092|gb|EDQ81437.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 807

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 29/164 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------D 106
           P R ++LVGP G+GK+ LA   + ++     S  A     + +                +
Sbjct: 372 PPRGILLVGPPGTGKTLLAKAVAGEADVPFISCSASEFVELYVGMGASRVRDLFARAKKE 431

Query: 107 TRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMT-------ART-----FPVSWGV 153
               V +++ID +    D +L  + N   +   + L+T       + T           V
Sbjct: 432 APSIVFIDEIDAVAKGRDGRLRSVGNDEREQTLNQLLTELDGFESSSTVIVLGATNRADV 491

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             P L    +   +V +  PD    E+++      +Q+ +   +
Sbjct: 492 LDPALRRPGRFDRIVTVEPPDRQGREEILTVHVTKKQLPLAPDV 535


>gi|158340697|ref|YP_001521865.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158341091|ref|YP_001522258.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158310938|gb|ABW32551.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158311332|gb|ABW32944.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 249

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 37/160 (23%)

Query: 25  EEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           E QL        F F     ++   L+              W       +++ GPSG+GK
Sbjct: 56  EAQLPYGKSWTNFEFAHVPTLNPAALME-------FAQTTHWLE-SGSNILIFGPSGTGK 107

Query: 78  SCLANIWSDK------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + +++                               +        +D    ++++D+  +
Sbjct: 108 THVSSALGASIIELGKRVKFVTATTLVQQLQLAKLQLELQSLLSKLDRYDLLIIDDLGYV 167

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             +D +   LF +I +      SLL+TA      W    P
Sbjct: 168 QKSDVETSVLFELI-AHRYERKSLLITANQPFSQWDSIFP 206


>gi|110802636|ref|YP_699224.1| Holliday junction DNA helicase RuvB [Clostridium perfringens SM101]
 gi|123341652|sp|Q0SRN3|RUVB_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110683137|gb|ABG86507.1| Holliday junction DNA helicase RuvB [Clostridium perfringens SM101]
          Length = 346

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           VIL GP G GK+ LANI +++           +++           L   D+L  ++   
Sbjct: 56  VILYGPPGLGKTTLANIIANEMGGNLKITSGPAIERAGDLAAILTTLNTNDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 114 -HRLNRSVEE 122


>gi|157103169|ref|XP_001647852.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aedes
           aegypti]
 gi|108884684|gb|EAT48909.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aedes
           aegypti]
          Length = 940

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P R  +L GP GSGK+ LA+  + + +       A  L + +    +  + E  +    
Sbjct: 266 PPRGFLLHGPPGSGKTLLAHAIAGQLKIGLIEIPATELVAGVSGESEERIREVFEQAAV 324



 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 690 PSGVL-LCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAV 738


>gi|119944996|ref|YP_942676.1| cell division protein CDC48 [Psychromonas ingrahamii 37]
 gi|119863600|gb|ABM03077.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Psychromonas ingrahamii 37]
          Length = 732

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 37/161 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDTRKP 110
           V++ GP G GK+ +A I + ++ +  FS     +                +         
Sbjct: 218 VLIYGPPGCGKTLIARIIAHETEANFFSVSGPEIIHKFYGESEAHLRKIFEEAGRKGPSI 277

Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           + +++ID +                 QL  +++ ++   + +++ A   P    +  P L
Sbjct: 278 IFIDEIDAIAPRRDQVVGEVEKRVVAQLLALMDGLNSRQNIIVIAATNLP---NLLDPAL 334

Query: 159 C--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               R      + I  PD D   +++      R + +   +
Sbjct: 335 RRPGRFDREICIPI--PDRDGRLQILE--IHTRGMPLADDV 371



 Score = 36.3 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G GK+ +A   +++S     S    +L
Sbjct: 487 PPKGLLLCGPPGVGKTLIAKAVANESGVNVISVKGPAL 524


>gi|83766090|dbj|BAE56233.1| unnamed protein product [Aspergillus oryzae]
          Length = 449

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 179 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 228

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 229 -KQLF---NMARENKPAIIF 244


>gi|260891161|ref|ZP_05902424.1| holliday junction DNA helicase RuvB [Leptotrichia hofstadii F0254]
 gi|260859188|gb|EEX73688.1| holliday junction DNA helicase RuvB [Leptotrichia hofstadii F0254]
          Length = 336

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 30/189 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + + +            L+           LE+ D+L  ++   
Sbjct: 56  ILLYGPPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEI-- 113

Query: 127 FHIINS--------IHQYDSSLLMTARTFPVS-WGVCLPD----------------LCSR 161
            H +N+          +     ++  +        V LP                 L  R
Sbjct: 114 -HRLNTSVEEILYPAMEDGELDILIGKGPSARSIRVELPQFTLIGATTRAGQLSTPLRDR 172

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                 ++    +D  L+++I +      I  D+     I +R   +   A +L+ +  +
Sbjct: 173 FGVTHRMEYYQLED--LKEIIRRGANILNISYDEDGITEIAKRSRGTPRIANRLLKRARD 230

Query: 222 LALSRGMGI 230
            AL  G GI
Sbjct: 231 FALVEGSGI 239


>gi|237744244|ref|ZP_04574725.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 7_1]
 gi|256027908|ref|ZP_05441742.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. D11]
 gi|260494172|ref|ZP_05814303.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_33]
 gi|289765857|ref|ZP_06525235.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D11]
 gi|229431473|gb|EEO41685.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 7_1]
 gi|260198318|gb|EEW95834.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_33]
 gi|289717412|gb|EFD81424.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D11]
          Length = 332

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 72/196 (36%), Gaps = 43/196 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + +++ ++         L+           LE+ D+L  ++   
Sbjct: 55  ILLYGPPGLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINS--------IHQYDSSLLMTARTFPV-SWGVCLP-----------DLCS---RLK 163
            H +NS          +     ++  +     S  + LP            L S   R +
Sbjct: 113 -HRLNSTVEEILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDR 171

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209
                K+   +++ ++ +I++      + ID+               +A  +++R+ R  
Sbjct: 172 FGVSHKMEYYNENEIKSIIIRGAKILGVKIDEDGAIEISKRSRGTPRIANRLLKRV-RDY 230

Query: 210 VFAE--KLVDKMDNLA 223
              +    +DK+   +
Sbjct: 231 CEIKGNGTIDKLSAKS 246


>gi|225452590|ref|XP_002275755.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 491

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------ 94
           +DL+  S  ++  R I    +W    + L GP G+GKS +    ++      +       
Sbjct: 216 EDLIAFSENQEYYRRIGR--AWKRGYL-LYGPPGTGKSTMIAAIANLLNYDVYDLELTGV 272

Query: 95  --NIAKSLDSILIDTRKPVLLEDID 117
             N    +  + I ++  +++EDID
Sbjct: 273 ENNTDLKMLLMEISSKAVIVIEDID 297


>gi|224126871|ref|XP_002319947.1| predicted protein [Populus trichocarpa]
 gi|222858323|gb|EEE95870.1| predicted protein [Populus trichocarpa]
          Length = 822

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 25/101 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR--------STRFSNIAKSLDSILID-------- 106
           P   ++L GP G GK+ LA+  ++++         +   S ++ + +  + D        
Sbjct: 268 PISGILLHGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRT 327

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144
               + +++ID +           N   + +  +   LMT 
Sbjct: 328 APSIIFIDEIDAIASKRE------NLQREMERRIVTQLMTC 362


>gi|170786275|gb|ACB38131.1| nonstructural polyprotein [Tulane virus]
          Length = 1447

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 66  VVILVGPSGSGKS----CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           V++L GP G GK+     LA   + + ++  +S+          D +  ++ ED    + 
Sbjct: 383 VIVLAGPPGCGKTTFAKHLAQHCAKELKTGIYSHTPGVDHWDAYDNQGVMIWEDFGATNP 442

Query: 122 NDT 124
            + 
Sbjct: 443 EEE 445


>gi|254291532|ref|ZP_04962323.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150422596|gb|EDN14552.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 449

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
            +   + + + +  AD  R +          +   +        RM  + +     + + 
Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225

Query: 220 DNLALSRGMGITRSLAAEV 238
           D+        I   L AEV
Sbjct: 226 DD---QGCKQIDLPLLAEV 241


>gi|148706482|gb|EDL38429.1| spastin, isoform CRA_b [Mus musculus]
          Length = 556

 Score = 42.1 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 314 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 363


>gi|320583831|gb|EFW98044.1| 26S protease subunit, putative [Pichia angusta DL-1]
          Length = 422

 Score = 42.1 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A ++    I     ++ E
Sbjct: 199 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLVRE 250


>gi|296417719|ref|XP_002838500.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634439|emb|CAZ82691.1| unnamed protein product [Tuber melanosporum]
          Length = 609

 Score = 42.1 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   +++S +   S
Sbjct: 361 PSGVL-LWGPPGCGKTLLAKAVANESGANFIS 391


>gi|156937380|ref|YP_001435176.1| proteasome-activating nucleotidase [Ignicoccus hospitalis KIN4/I]
 gi|156566364|gb|ABU81769.1| 26S proteasome subunit P45 family [Ignicoccus hospitalis KIN4/I]
          Length = 400

 Score = 42.1 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ +A   + +  +T    +   L +  I     ++ E
Sbjct: 168 PLKGVLLYGPPGCGKTLIARAVAGEVGATFIRVVGSELVNKFIGEGARIVRE 219


>gi|110799933|ref|YP_696627.1| Holliday junction DNA helicase RuvB [Clostridium perfringens ATCC
           13124]
 gi|168204869|ref|ZP_02630874.1| holliday junction DNA helicase RuvB [Clostridium perfringens E str.
           JGS1987]
 gi|168208648|ref|ZP_02634273.1| holliday junction DNA helicase RuvB [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214132|ref|ZP_02639757.1| holliday junction DNA helicase RuvB [Clostridium perfringens CPE
           str. F4969]
 gi|168215573|ref|ZP_02641198.1| holliday junction DNA helicase RuvB [Clostridium perfringens NCTC
           8239]
 gi|169343509|ref|ZP_02864508.1| holliday junction DNA helicase RuvB [Clostridium perfringens C str.
           JGS1495]
 gi|182624456|ref|ZP_02952240.1| holliday junction DNA helicase RuvB [Clostridium perfringens D str.
           JGS1721]
 gi|123344604|sp|Q0TP13|RUVB_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110674580|gb|ABG83567.1| Holliday junction DNA helicase RuvB [Clostridium perfringens ATCC
           13124]
 gi|169298069|gb|EDS80159.1| holliday junction DNA helicase RuvB [Clostridium perfringens C str.
           JGS1495]
 gi|170663662|gb|EDT16345.1| holliday junction DNA helicase RuvB [Clostridium perfringens E str.
           JGS1987]
 gi|170712997|gb|EDT25179.1| holliday junction DNA helicase RuvB [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714356|gb|EDT26538.1| holliday junction DNA helicase RuvB [Clostridium perfringens CPE
           str. F4969]
 gi|177910459|gb|EDT72836.1| holliday junction DNA helicase RuvB [Clostridium perfringens D str.
           JGS1721]
 gi|182382068|gb|EDT79547.1| holliday junction DNA helicase RuvB [Clostridium perfringens NCTC
           8239]
          Length = 346

 Score = 42.1 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           VIL GP G GK+ LANI +++           +++           L   D+L  ++   
Sbjct: 56  VILYGPPGLGKTTLANIIANEMGGNLKITSGPAIERAGDLAAILTTLNTNDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 114 -HRLNRSVEE 122


>gi|73669574|ref|YP_305589.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro]
 gi|72396736|gb|AAZ71009.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro]
          Length = 763

 Score = 42.1 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 17/83 (20%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGK 77
                 +  DD+     +E+  RL+     WP +               V+L GP G+GK
Sbjct: 479 LIEVPTVGWDDV---GGLEEVKRLLKEVVEWPLKNPESYRDIGVEAPKGVLLYGPPGTGK 535

Query: 78  SCLANIWSDKSRSTRFSNIAKSL 100
           + LA   + +S +   +     L
Sbjct: 536 TLLAKAIAHESDANFITAKGSDL 558



 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 28/117 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   +++S +   S                 I +  +    +    
Sbjct: 252 VLLHGPPGTGKTLLAKAVANESDAYFISINGPEIMSKYYGESERAIREIFEDAEKNAPAI 311

Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + L++ID +                 QL  +++ +    + +++ +   P +  V L
Sbjct: 312 IFLDEIDSIAPKRAEVTGEVERRVVAQLLSLMDGLKARKNVIVIGSTNRPEALDVAL 368


>gi|283458260|ref|YP_003362879.1| putative ATPase [Rothia mucilaginosa DY-18]
 gi|283134294|dbj|BAI65059.1| predicted ATPase [Rothia mucilaginosa DY-18]
          Length = 418

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 42/202 (20%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA++W               +     +        + + K V +++
Sbjct: 154 LYLDGGFGVGKTHLLASLWHYVEGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDE 213

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG---VCLPD-------LCS---- 160
            +L D  DT L   ++  +      L+ T+ T P + G       D       L S    
Sbjct: 214 FELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALGEGRFAAEDFKREIQVLASQFEV 273

Query: 161 --------RLKAATVVKISLPDDDFLEKVIVKMFADRQIFID--KKLAAYIVQ-RMERSL 209
                   R +        + DD   +  I ++F  + + +D    L  ++ +    R  
Sbjct: 274 HRVDGEDFRHRGLPAAPEPVADDA-FDAKIEEVFGGQTVGVDNFADLVEHLAKVHPSR-- 330

Query: 210 VFAEKLVDKMDNLALSRGMGIT 231
               +L+D +D +A      IT
Sbjct: 331 --YRQLIDGLDGIAWRDVHPIT 350


>gi|255037439|ref|YP_003088060.1| Holliday junction DNA helicase RuvB [Dyadobacter fermentans DSM
           18053]
 gi|254950195|gb|ACT94895.1| Holliday junction DNA helicase RuvB [Dyadobacter fermentans DSM
           18053]
          Length = 341

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 73/201 (36%), Gaps = 27/201 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L+NI +++  S         LD           L++ D+L  ++   
Sbjct: 59  VLLHGPPGLGKTTLSNIIANELGSGIKITSGPVLDKPSDLAGLLTNLQEHDVLFIDEI-- 116

Query: 127 FHIINSIHQY---------DSSLLMTARTFPVSWGVCLPD------------LCSRLKA- 164
            H +N I +             +++ +     S  + L              L S L+A 
Sbjct: 117 -HRLNPIVEEYLYSAMEDYKIDIMLDSGPNARSIQIGLNPFTLIGATTRAGMLTSPLRAR 175

Query: 165 -ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
                ++   D   L  ++ +  +     +++  A  I +R   +   A  L+ +  D  
Sbjct: 176 FGINARLEYYDAQLLSSILKRSASILGTPLEEDAAFEIARRSRGTPRIANNLLRRTRDFA 235

Query: 223 ALSRGMGITRSLAAEVLKETQ 243
            +     IT ++A   L+   
Sbjct: 236 QVKGNGRITVAIAEMALQALD 256


>gi|261368793|ref|ZP_05981676.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176]
 gi|282569057|gb|EFB74592.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176]
          Length = 626

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 70/215 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSIAGSEFVEMFVGMGASKVRDLFKQAAEKAPCI 264

Query: 111 VLLEDID----------LLDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
           V +++ID           +  ND       QL   ++        +++ A   P S    
Sbjct: 265 VFIDEIDTIGKKRDGAGSIGGNDEREQTLNQLLTEMDGFDATKGVVILAATNRPESLDPA 324

Query: 152 -----------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
                       V LPDL  R                 E ++      +++ +       
Sbjct: 325 LTRPGRFDRRVPVELPDLKGR-----------------ESILRLHA--KKVKLGPDCDFA 365

Query: 201 IVQRMERSLVFAEKLVDKMDNLAL----SRGMGIT 231
           IV RM      A +L + ++  AL     R   +T
Sbjct: 366 IVARMTPGASGA-ELANIINEAALCAVRHRRKAVT 399


>gi|225556569|gb|EEH04857.1| 26S protease regulatory subunit [Ajellomyces capsulatus G186AR]
          Length = 464

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 250 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 310 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--L 367

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 368 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 403


>gi|224100633|ref|XP_002311954.1| predicted protein [Populus trichocarpa]
 gi|222851774|gb|EEE89321.1| predicted protein [Populus trichocarpa]
          Length = 434

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P R  +L GP G+GKS LA   + ++ ST FS  +  L S                   +
Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDN 223

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    +     L++ A   P +  
Sbjct: 224 APSIIFIDEIDSLCGQRGECNESEASRRIKTELLVQMQGIGNDDQKVLVLAATNTPYALD 283

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 284 QAIRRRFDKRIYIPLPDLKAR 304


>gi|154284456|ref|XP_001543023.1| 26S protease regulatory subunit 6A [Ajellomyces capsulatus NAm1]
 gi|150406664|gb|EDN02205.1| 26S protease regulatory subunit 6A [Ajellomyces capsulatus NAm1]
          Length = 464

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 250 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 310 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--L 367

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 368 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 403


>gi|153955758|ref|YP_001396523.1| Holliday junction DNA helicase RuvB [Clostridium kluyveri DSM 555]
 gi|219856125|ref|YP_002473247.1| hypothetical protein CKR_2782 [Clostridium kluyveri NBRC 12016]
 gi|189046026|sp|A5N206|RUVB_CLOK5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767421|sp|B9E5Q8|RUVB_CLOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146348616|gb|EDK35152.1| RuvB [Clostridium kluyveri DSM 555]
 gi|219569849|dbj|BAH07833.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 350

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
            +  +   +    +D         V+  GP G GK+ LANI + +           +++ 
Sbjct: 42  FIEAAKNRK--EALDH--------VLFYGPPGLGKTTLANIIALEMGGNLKITSGPAIER 91

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136
                     L+D D+L  ++    H +N   + 
Sbjct: 92  AGDLAAILTGLDDRDVLFIDEI---HRLNRSVEE 122


>gi|311745415|ref|ZP_07719200.1| holliday junction DNA helicase RuvB [Algoriphagus sp. PR1]
 gi|126577964|gb|EAZ82184.1| holliday junction DNA helicase RuvB [Algoriphagus sp. PR1]
          Length = 344

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ L++I +++ +S         LD           LE+ D+L  +
Sbjct: 55  PLDHVLLHGPPGLGKTTLSHIIANELQSGIKITSGPVLDKPSDLAGLLTNLEEGDVLFID 114

Query: 123 DTQLFHIINSIHQY 136
           +    H +N I + 
Sbjct: 115 EI---HRLNPIVEE 125


>gi|145494450|ref|XP_001433219.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400336|emb|CAK65822.1| unnamed protein product [Paramecium tetraurelia]
          Length = 465

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 14/76 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G+GK+ LA   + +   T FS  +  L S  +   + ++ E            
Sbjct: 199 ILLYGPPGTGKTFLAKACATECEGTFFSVSSADLISKFVGESERLIKE------------ 246

Query: 127 FHIINSIHQYDSSLLM 142
             + N   +   +++ 
Sbjct: 247 --LFNMARESKPTIIF 260


>gi|157167438|ref|XP_001660693.1| metalloprotease m41 ftsh [Aedes aegypti]
 gi|108873589|gb|EAT37814.1| metalloprotease m41 ftsh [Aedes aegypti]
          Length = 598

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D +L+    
Sbjct: 192 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGA 234


>gi|328781990|ref|XP_392923.4| PREDICTED: smallminded [Apis mellifera]
          Length = 939

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R  +L GP G GK+ LA+  + +         A  L + +    +  + E
Sbjct: 322 PPRGFLLHGPPGCGKTLLAHAIAGELGIPLLKVAAPELVTGVSGESEARIRE 373



 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 678 VLLCGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGESEKAV 723


>gi|319948202|ref|ZP_08022361.1| putative transcriptional regulator [Dietzia cinnamea P4]
 gi|319438137|gb|EFV93098.1| putative transcriptional regulator [Dietzia cinnamea P4]
          Length = 591

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 12/141 (8%)

Query: 71  GPSGSGKSCLANIWSD-KSRSTRFSNIAKS-------LDSILIDTRKPVLLEDIDLLDFN 122
           GPSGSG+S  A   +   +R  R +    +       +   L +   PV+L+DIDLL  +
Sbjct: 356 GPSGSGRSTTARAIAGPGARHLRLAEADDAATAWREMVAPALRERSGPVILDDIDLL--D 413

Query: 123 DTQLFHIINSIHQYDSSL-LMTARTFPVSWGVCLPDLCSRLKAA-TVVKISLPDDDFLEK 180
           +  L  +   +      L ++T+R  P      + DLC R      + +     +  + +
Sbjct: 414 EADLRRLAARMESAGEHLVVVTSRDDPRPAVTAILDLCDRRTEVRPLHERGTEGEGIVRR 473

Query: 181 VIVKMFADRQIFIDKKLAAYI 201
           ++  + A R +      + ++
Sbjct: 474 MVADLAARRGMRPPTVTSRFV 494


>gi|299532556|ref|ZP_07045946.1| recombination factor protein RarA [Comamonas testosteroni S44]
 gi|298719503|gb|EFI60470.1| recombination factor protein RarA [Comamonas testosteroni S44]
          Length = 446

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 30/197 (15%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112
           IL GP G GK+ +A + +D   +   S                 A++  S L+  R  V 
Sbjct: 55  ILWGPPGVGKTTIARLMADAFDAQFISISAVLGGVKDIREAVEQAQAAQSGLLQQRTIVF 114

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR  A  V++   
Sbjct: 115 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR-AAVYVLQSLT 169

Query: 173 PDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-- 229
           PDD  L++++ K  A + I  I+ +    ++   +     A +L++ ++ L+++      
Sbjct: 170 PDD--LKQIVAKAQAIQAIPAIEDEALERLIAYAD---GDARRLLNTLETLSITAEQAGV 224

Query: 230 --ITRSLAAEVLKETQQ 244
             IT +   +VL E  +
Sbjct: 225 QSITDAWLLKVLGERMR 241


>gi|261404143|ref|YP_003240384.1| AAA ATPase [Paenibacillus sp. Y412MC10]
 gi|261280606|gb|ACX62577.1| AAA ATPase [Paenibacillus sp. Y412MC10]
          Length = 1148

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 69/183 (37%), Gaps = 24/183 (13%)

Query: 47  SAIEQAVRLI--DSWPSWPSR-VVILVGPSGSGKSCLANIWS-------DKSRSTRFSNI 96
           ++   A   I  ++   W    V+++ G  G GK+ +A + +       D        +I
Sbjct: 176 ASNTFAPTRIYREALQRWSHNHVIVISGEPGVGKTTIAYLLALAYLQPDDLDGFIWAYSI 235

Query: 97  AKSLDSILIDTRKPVLLEDIDLLDF--------NDTQLFHIINSIHQYD--SSLLMTART 146
               + +  D ++ ++L+D     F        ++ QL  +I  I  +     L++T R 
Sbjct: 236 KDVYNMLEDDKKQVIILDDFWGSIFHNESTRRNDENQLNKLIQRIIDFGGNKRLILTTRE 295

Query: 147 FPVSWGVCL-PDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           + +  G+   P L  +L + A +  +    +     ++ +      +    +   Y+ Q 
Sbjct: 296 YVLRQGLQRQPMLKEKLEQYALICTVEEYSNIEKASILFQHLYSSNLHY--EYVTYLFQN 353

Query: 205 MER 207
             R
Sbjct: 354 CSR 356


>gi|195590190|ref|XP_002084829.1| GD14479 [Drosophila simulans]
 gi|194196838|gb|EDX10414.1| GD14479 [Drosophila simulans]
          Length = 1006

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92
             +E  V +++    WPSR               V+L GP G+GK+ L            
Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            S +A S +  +I  + P LL     +  ++  + ++ N        +L 
Sbjct: 771 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818


>gi|156355133|ref|XP_001623528.1| predicted protein [Nematostella vectensis]
 gi|156210238|gb|EDO31428.1| predicted protein [Nematostella vectensis]
          Length = 284

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GP G+GK+ LA   + +  ST +S  +  L S  +   + ++          
Sbjct: 15  PWRRVLLYGPPGTGKTRLAQAVASEVNSTFYSVSSADLISSWVGESEKLI---------- 64

Query: 123 DTQLFH 128
             +LFH
Sbjct: 65  -RELFH 69


>gi|87198597|ref|YP_495854.1| AAA family ATPase, CDC48 subfamily protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134278|gb|ABD25020.1| AAA family ATPase, CDC48 subfamily [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 772

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 73/196 (37%), Gaps = 40/196 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   +++S ++ F                  + +  +    +
Sbjct: 243 PPKGVLLHGPPGTGKTRLARAVANESDASFFTINGPEIMGSAYGESEKRLREVFEEATAN 302

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +H   + +++ A   P +    
Sbjct: 303 SPSIIFIDEIDSIAPKRSEVHGEAEKRLVAQLLTLMDGLHSRSNLVVIAATNRPDAIDEA 362

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L     R     VV +  PD+    +++      R + + + +    + R     V A  
Sbjct: 363 LRR-PGRFDREIVVGV--PDESGRREIL--GIHTRGMPLAEDVDLQELARTTHGFVGA-- 415

Query: 215 LVDKMDNLALSRGMGI 230
                D  AL+R   I
Sbjct: 416 -----DLAALAREAAI 426


>gi|68068217|ref|XP_676018.1| cell division cycle ATPase [Plasmodium berghei strain ANKA]
 gi|56495516|emb|CAH99651.1| cell division cycle ATPase, putative [Plasmodium berghei]
          Length = 932

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 43/141 (30%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107
           ++ ++L GP G GK+ LA   +++  +   S                N+    D     +
Sbjct: 670 NKGILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAAS 729

Query: 108 RKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152
              +  ++ID L                  Q+   I+ I++  +  ++ A   P      
Sbjct: 730 PCIIFFDEIDSLAKERNSNNNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 789

Query: 153 ------------VCLPDLCSR 161
                       + LPD  SR
Sbjct: 790 LTRPGRLDKLIYISLPDFKSR 810


>gi|82596542|ref|XP_726304.1| cell division cycle ATPase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481659|gb|EAA17869.1| putative cell division cycle ATPase [Plasmodium yoelii yoelii]
          Length = 1078

 Score = 42.1 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 43/141 (30%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107
           ++ ++L GP G GK+ LA   +++  +   S                N+    D     +
Sbjct: 816 NKGILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAAS 875

Query: 108 RKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152
              +  ++ID L                  Q+   I+ I++  +  ++ A   P      
Sbjct: 876 PCIIFFDEIDSLAKERNSNNNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 935

Query: 153 ------------VCLPDLCSR 161
                       + LPD  SR
Sbjct: 936 LTRPGRLDKLIYISLPDFKSR 956


>gi|330902594|gb|EGH33609.1| chromosomal replication initiation protein [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 219

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 11/78 (14%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66
           +Q   + + +  Q+  +      ++R    ++ +   + + A     +W    +      
Sbjct: 144 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 201

Query: 67  -VILVGPSGSGKSCLANI 83
            + L G  G GK+ L + 
Sbjct: 202 PLFLYGGVGLGKTHLMHA 219


>gi|317402140|gb|EFV82732.1| hypothetical protein HMPREF0005_00317 [Achromobacter xylosoxidans
           C54]
          Length = 446

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 59/179 (32%), Gaps = 20/179 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G GK+ LA + +D   +   +  A  +   + D R  V +  +       T L
Sbjct: 55  MIFWGPPGVGKTTLARLMADGFDAQFIAISA--VLGGVKDIRDAVTVAQVAQGQGRRTIL 112

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAATVVK 169
           F    H  N           +      + A T   S+ V    L SR     L++ T  +
Sbjct: 113 FVDEVHRFNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSA-LLSRARVYVLQSLTPEE 171

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +    D  +         D +I ID      +    +         V+ +   A + G 
Sbjct: 172 LQQLVDRAITAFNDGHEEDARIHIDADAREQLAAWADGDARRLISAVEVVAESAQAAGR 230


>gi|314959094|gb|EFT03196.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA1]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|154151004|ref|YP_001404622.1| proteasome-activating nucleotidase [Candidatus Methanoregula boonei
           6A8]
 gi|166199290|sp|A7I8B8|PAN_METB6 RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|153999556|gb|ABS55979.1| 26S proteasome subunit P45 family [Methanoregula boonei 6A8]
          Length = 436

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   + ++ +     +   L    I     ++ E  DL 
Sbjct: 211 PPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELFDLA 267


>gi|154336677|ref|XP_001564574.1| ATPase-like protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061609|emb|CAM38640.1| ATPase-like protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 532

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R ++L GP G+GK+ LA   + +  +   S  A  L
Sbjct: 182 PWRRLLLYGPPGTGKTRLAAATATEYGAVFLSVSAADL 219


>gi|294861450|gb|ADF45322.1| proteasome 26S ATPase subunit 1 [Pagothenia borchgrevinki]
          Length = 171

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 91  PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 142


>gi|294861448|gb|ADF45321.1| proteasome 26S ATPase subunit 1 [Trematomus bernacchii]
          Length = 180

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 106 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 157


>gi|328720702|ref|XP_001944737.2| PREDICTED: 26S protease regulatory subunit 4-like [Acyrthosiphon
           pisum]
          Length = 438

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267


>gi|326476433|gb|EGE00443.1| ATPase [Trichophyton tonsurans CBS 112818]
 gi|326482126|gb|EGE06136.1| 26S protease regulatory subunit 6A [Trichophyton equinum CBS
           127.97]
          Length = 461

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%)

Query: 45  VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
           V    +Q   L+++  WP              P   ++  GP G+GK+ LA   + ++ +
Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267

Query: 91  TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122
           T        L  + I     ++                ++++D +               
Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 327

Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178
              +  ++N        D   ++ A          L  L S RL     ++  LP+++  
Sbjct: 328 QRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 383

Query: 179 EKVIVKMFADRQIFIDKKL 197
            +++      R++ +D K+
Sbjct: 384 AQIL--RIHSRKMTVDDKV 400


>gi|322692993|gb|EFY84872.1| 26S protease regulatory subunit 6A [Metarhizium acridum CQMa 102]
          Length = 457

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 244 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 303

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 304 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 361

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ ID  +
Sbjct: 362 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMKIDPGV 397


>gi|313239604|emb|CBY14503.1| unnamed protein product [Oikopleura dioica]
          Length = 435

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 213 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 264


>gi|296222266|ref|XP_002757114.1| PREDICTED: 26S protease regulatory subunit 4-like [Callithrix
           jacchus]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|291386961|ref|XP_002709835.1| PREDICTED: spastin [Oryctolagus cuniculus]
          Length = 631

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 389 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 438


>gi|255639927|gb|ACU20256.1| unknown [Glycine max]
          Length = 426

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 321 DPALLRPGRLDRKVEFGLPDLESR 344


>gi|253743929|gb|EET00205.1| 26S protease regulatory subunit 6A [Giardia intestinalis ATCC
           50581]
          Length = 501

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           PS+ V+L G  G+GK+ LA   + ++  +     A  L  + I     +++E
Sbjct: 258 PSKGVLLYGVPGTGKTALARALAHEANCSFLQLTATQLVQLYIGEGSAMVIE 309


>gi|227522807|ref|ZP_03952856.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290]
 gi|227090008|gb|EEI25320.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290]
          Length = 441

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +I  GP GSGK+ LA I + K+++    FS +   +  I    +      + +     
Sbjct: 52  PSMIFWGPPGSGKTTLAEIIAKKTKAKFVTFSAVTSGIRDIRKLMKDA----EANRNMGG 107

Query: 123 DTQLF----HIINSIHQY 136
            T +F    H  N   Q 
Sbjct: 108 KTIVFVDEIHRFNKAQQD 125


>gi|225712344|gb|ACO12018.1| 26S protease regulatory subunit 4 [Lepeophtheirus salmonis]
          Length = 438

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267


>gi|224051609|ref|XP_002200588.1| PREDICTED: putative 26S ATPase complex subunit 4 [Taeniopygia
           guttata]
 gi|327259152|ref|XP_003214402.1| PREDICTED: 26S protease regulatory subunit 4-like [Anolis
           carolinensis]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|255585245|ref|XP_002533324.1| 26S protease regulatory subunit, putative [Ricinus communis]
 gi|223526846|gb|EEF29060.1| 26S protease regulatory subunit, putative [Ricinus communis]
          Length = 357

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 133 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 191

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 192 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 251

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 252 DPALLRPGRLDRKVEFGLPDLESR 275


>gi|224088623|ref|XP_002308501.1| predicted protein [Populus trichocarpa]
 gi|222854477|gb|EEE92024.1| predicted protein [Populus trichocarpa]
          Length = 429

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 205 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 263

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 264 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 323

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 324 DPALLRPGRLDRKVEFGLPDLESR 347


>gi|148910381|gb|ABR18268.1| unknown [Picea sitchensis]
          Length = 425

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 201 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 259

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 260 KACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 320 DPALLRPGRLDRKVEFGLPDLESR 343


>gi|148906531|gb|ABR16418.1| unknown [Picea sitchensis]
          Length = 425

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 201 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 259

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 260 KACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 320 DPALLRPGRLDRKVEFGLPDLESR 343


>gi|242022643|ref|XP_002431748.1| 26S protease regulatory subunit, putative [Pediculus humanus
           corporis]
 gi|212517073|gb|EEB19010.1| 26S protease regulatory subunit, putative [Pediculus humanus
           corporis]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|194017275|ref|ZP_03055887.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus
           ATCC 7061]
 gi|194011143|gb|EDW20713.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus
           ATCC 7061]
          Length = 421

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTRFS--NIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  +        +   +  ++        +  +  ++L+++ 
Sbjct: 41  MILYGPPGIGKTSIATAIAGSTSIAFRTLNAVIHNKKDMEAVAAEAKMSGQVILILDEVH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD              +    +L+ A T    + V  P + SR     + ++   + + 
Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTA-NPYHVINPAIRSR---TQIFELKPLETEQ 153

Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
           ++  + +   D  R +      +D +   +               ++ ++   LS     
Sbjct: 154 IKAALTRALQDEHRGLGGYEVTVDDEAMNHFSNGCG---GDVRSALNALELAVLSTKADD 210

Query: 230 -----ITRSLAAEVLKE 241
                IT + A E L++
Sbjct: 211 AGHIMITLAAAEECLQK 227


>gi|168018023|ref|XP_001761546.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687230|gb|EDQ73614.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 425

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 201 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 259

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 260 KACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 320 DPALLRPGRLDRKVEFGLPDLESR 343


>gi|168039290|ref|XP_001772131.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676594|gb|EDQ63075.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 769

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 64/200 (32%), Gaps = 43/200 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GP G+GK+ LA   + ++    FS        + +                     
Sbjct: 268 VLLYGPPGTGKTLLAKAIAGEAGVPFFSASGAEFVEMFVGVAAARVRDLFTRARQFAPSI 327

Query: 111 VLLEDIDLLDF-------------NDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVC 154
           V +++ID +                +  L  I+          S +L+   T      + 
Sbjct: 328 VFIDEIDAIGAKRGGPDVGGGGVEREQGLIQILTELDGFQSQGSKVLVVGAT--NRLDML 385

Query: 155 LPDLCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI--VQRMERSL 209
            P L   L+       + I LP ++    ++     ++    +K+    +  +  +    
Sbjct: 386 DPAL---LRKGRFDKTISIGLPSEEGRLAILQVHSRNKGFKSEKEKQELLKELASITFDY 442

Query: 210 VFAEKLVDKMDNLALSRGMG 229
             A +L + ++  A+     
Sbjct: 443 SGA-ELQNVLNEAAILAARK 461


>gi|168040186|ref|XP_001772576.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676131|gb|EDQ62618.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 425

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 201 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 259

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 260 KACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 320 DPALLRPGRLDRKVEFGLPDLESR 343


>gi|225441955|ref|XP_002263826.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297742918|emb|CBI35785.3| unnamed protein product [Vitis vinifera]
          Length = 426

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 321 DPALLRPGRLDRKVEFGLPDLESR 344


>gi|156551041|ref|XP_001604655.1| PREDICTED: similar to 26S proteasome regulatory chain 4 [Nasonia
           vitripennis]
          Length = 464

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|156718142|ref|NP_001096576.1| ATPase WRNIP1 [Bos taurus]
 gi|151553722|gb|AAI50137.1| Werner helicase interacting protein 1 [Bos taurus]
          Length = 638

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+            ++   + K   + D+     N+ 
Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSI-----RFVTLSATSAKTTDVRDVIKQAQNEK 289

Query: 125 QLF-----------HIINSIHQY 136
           + F           H  N   Q 
Sbjct: 290 RFFKRKTILFIDEIHRFNKSQQD 312


>gi|152977760|ref|YP_001343389.1| recombination factor protein RarA [Actinobacillus succinogenes
           130Z]
 gi|150839483|gb|ABR73454.1| AAA ATPase central domain protein [Actinobacillus succinogenes
           130Z]
          Length = 439

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 23/146 (15%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI------ 105
           RLI++        +I  GP G GK+ LA I ++ +++    FS +   +  I        
Sbjct: 43  RLIENDQ---ISSMIFWGPPGVGKTTLAQIIANSTQAGFIEFSAVTSGIKDIRAIMQQAE 99

Query: 106 -----DTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                  +  V +++I   +      F       +  S +L+ A T   S+ +    L S
Sbjct: 100 QNRRYGAKTIVFVDEIHRFNKAQQDAFLPF---VEKGSIVLIGATTENPSFEINGA-LLS 155

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMF 186
           R     V  +   +   + K++ +  
Sbjct: 156 R---CKVFVLQPLETADIVKLLQRAL 178


>gi|126303140|ref|XP_001371504.1| PREDICTED: similar to spastin protein isoform 1 [Monodelphis
           domestica]
          Length = 619

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 377 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 426


>gi|119585865|gb|EAW65461.1| hCG16327, isoform CRA_a [Homo sapiens]
          Length = 251

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 175 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 226


>gi|119585866|gb|EAW65462.1| hCG16327, isoform CRA_b [Homo sapiens]
          Length = 294

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|114654363|ref|XP_001142024.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Pan
           troglodytes]
 gi|297298439|ref|XP_002805227.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Macaca
           mulatta]
 gi|332223520|ref|XP_003260921.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Nomascus
           leucogenys]
 gi|194386730|dbj|BAG61175.1| unnamed protein product [Homo sapiens]
          Length = 367

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 145 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 196


>gi|62896895|dbj|BAD96388.1| proteasome 26S ATPase subunit 1 variant [Homo sapiens]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|6652878|gb|AAF22521.1|AF123390_1 26S proteasome AAA-ATPase subunit RPT1a [Arabidopsis thaliana]
          Length = 426

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 321 DPALLRSGRLDRKVEFGLPDLESR 344


>gi|28932716|gb|AAO60052.1| proteasome-like protein [Rhipicephalus appendiculatus]
          Length = 397

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 14/86 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQIEANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFP 148
                 + N    +   ++    T P
Sbjct: 226 ------MFNYARDHQPCVIFMDETMP 245


>gi|15220930|ref|NP_175778.1| RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase [Arabidopsis
           thaliana]
 gi|297853156|ref|XP_002894459.1| regulatory particle triple-a 1A [Arabidopsis lyrata subsp. lyrata]
 gi|28558169|sp|Q9SSB5|PRS7A_ARATH RecName: Full=26S protease regulatory subunit 7 homolog A; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT1a; AltName:
           Full=26S proteasome subunit 7 homolog A; AltName:
           Full=Regulatory particle triple-A ATPase subunit 1a
 gi|6056388|gb|AAF02852.1|AC009324_1 26S proteasome ATPase subunit [Arabidopsis thaliana]
 gi|12324021|gb|AAG51970.1|AC024260_8 26S proteasome ATPase subunit; 3861-6264 [Arabidopsis thaliana]
 gi|17065568|gb|AAL32938.1| 26S proteasome ATPase subunit [Arabidopsis thaliana]
 gi|23197722|gb|AAN15388.1| 26S proteasome ATPase subunit [Arabidopsis thaliana]
 gi|297340301|gb|EFH70718.1| regulatory particle triple-a 1A [Arabidopsis lyrata subsp. lyrata]
 gi|332194871|gb|AEE32992.1| regulatory particle triple-A 1A [Arabidopsis thaliana]
          Length = 426

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 321 DPALLRPGRLDRKVEFGLPDLESR 344


>gi|3914449|sp|O64982|PRS7_PRUPE RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName: Full=26S
           proteasome subunit 7; AltName: Full=Regulatory particle
           triple-A ATPase subunit 1
 gi|3172331|gb|AAC18523.1| 26S proteasome subunit 7 [Prunus persica]
          Length = 425

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 201 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 259

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 260 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 320 DPALLRPGRLDRKVEFGLPDLESR 343


>gi|15239140|ref|NP_199115.1| RPT4A; ATPase [Arabidopsis thaliana]
 gi|75337115|sp|Q9SEI3|PS10A_ARATH RecName: Full=26S protease regulatory subunit 10B homolog A;
           AltName: Full=26S proteasome AAA-ATPase subunit RPT4a;
           AltName: Full=26S proteasome subunit 10B homolog A;
           AltName: Full=Regulatory particle triple-A ATPase
           subunit 4a
 gi|6652884|gb|AAF22524.1|AF123393_1 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
 gi|13937183|gb|AAK50085.1|AF372945_1 AT5g43010/MBD2_21 [Arabidopsis thaliana]
 gi|9758590|dbj|BAB09203.1| 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
 gi|18700262|gb|AAL77741.1| AT5g43010/MBD2_21 [Arabidopsis thaliana]
 gi|332007517|gb|AED94900.1| regulatory particle triple-A ATPase 4A [Arabidopsis thaliana]
          Length = 399

 Score = 42.1 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E        
Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 223

Query: 123 DTQLFHIINSIHQYD 137
                 + N   ++ 
Sbjct: 224 ------MFNYAREHQ 232


>gi|320104949|ref|YP_004180540.1| Chromosomal replication initiator DnaA [Isosphaera pallida ATCC
           43644]
 gi|319752231|gb|ADV63991.1| Chromosomal replication initiator DnaA [Isosphaera pallida ATCC
           43644]
          Length = 439

 Score = 42.1 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 58/185 (31%), Gaps = 47/185 (25%)

Query: 67  VILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTR-------------- 108
           ++L GP G GK+     LA  W D +     + +A S     +  R              
Sbjct: 97  LVLFGPPGVGKTRVLAGLAGDWLDAAAGRELTFVASSPPQSEVVARHRTVWMTAEGFGTA 156

Query: 109 ----------------------KPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMT 143
                                   + L+D++ L  +     +L   ++++ ++     +T
Sbjct: 157 CERAERAGIAGWERLRRRIRSVGLLALDDLEGLRASRVAQRELIATLDALREHGGVAAVT 216

Query: 144 ARTFPVSWGVC--LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAA 199
           AR  P           L +RL     V++  P  +   +  ++        + ++     
Sbjct: 217 ARGSPARLAAQGWSRRLVNRLVGGLAVRLEPPSLETRRRAALERAGQIGSVVVLNTDAIE 276

Query: 200 YIVQR 204
           ++   
Sbjct: 277 WLAAH 281


>gi|315082721|gb|EFT54697.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL027PA2]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|313793175|gb|EFS41242.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA1]
 gi|315078396|gb|EFT50427.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL053PA2]
 gi|327457122|gb|EGF03777.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL092PA1]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|290769987|gb|ADD61754.1| putative protein [uncultured organism]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 27/172 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           VI  GP G+GK+ LA I ++ + +      A       ++       +++  +    T L
Sbjct: 55  VIFYGPPGTGKTTLARIIANTTSAEFNQVNATVAGKKDMEEVVAKAKDNL-GMYGRKTIL 113

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + + ++   +
Sbjct: 114 FVDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LISR---SIIFELKPLE 169

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            + ++ +I +   D           ID     ++    + S   A   ++ +
Sbjct: 170 KEDIKTIIKRAVYDEKKGMGSYNAAIDDDALEFLA---DISNGDARNALNAI 218


>gi|291333224|gb|ADD92934.1| putative ATPase family associated with various cellular activities
           AAA [uncultured archaeon MedDCM-OCT-S04-C14]
          Length = 406

 Score = 42.1 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 40/154 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+LVGP G GK+ LA   ++ + +T    +   L    I     ++          
Sbjct: 181 PPKGVLLVGPPGCGKTLLAKAVANHTNATFIRMVGSELAQKYIGEGGRMVRELFSLAKEK 240

Query: 113 ------LEDIDLLD---------FNDTQLFHIINSIHQYDSS------LLMTARTFPVSW 151
                 L++ID +           +      ++  + + D         ++ A   P   
Sbjct: 241 APSVIFLDEIDAIGAKRLDGSTSGDREVQRTLMQLLAELDGFDALKDVKIIAATNRPDIL 300

Query: 152 GVCLPDLCSRLKAA---TVVKISLPDDDFLEKVI 182
              L      L+      V++I +PDD   + ++
Sbjct: 301 DDAL------LRPGRFDRVIEIPIPDDASRKAIL 328


>gi|171186069|ref|YP_001794988.1| AAA family ATPase, CDC48 subfamily protein [Thermoproteus
           neutrophilus V24Sta]
 gi|170935281|gb|ACB40542.1| AAA family ATPase, CDC48 subfamily [Thermoproteus neutrophilus
           V24Sta]
          Length = 737

 Score = 42.1 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 28/116 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + ++L+GP G+GK+ LA   ++++ +   +                 L  I  + +  
Sbjct: 209 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 268

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150
               + +++ID +                 QL  +++ + +    +++ A   P +
Sbjct: 269 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVVVIGATNRPDA 324



 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G GK+  A   + +S +   +     L
Sbjct: 497 PPKGILLFGPPGVGKTLFAKAVATESGANFIAVRGPEL 534


>gi|115385577|ref|XP_001209335.1| cell division cycle protein 48 [Aspergillus terreus NIH2624]
 gi|114187782|gb|EAU29482.1| cell division cycle protein 48 [Aspergillus terreus NIH2624]
          Length = 821

 Score = 42.1 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 372

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 373 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 412


>gi|314916066|gb|EFS79897.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA4]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|313765281|gb|EFS36645.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL013PA1]
 gi|313815350|gb|EFS53064.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL059PA1]
 gi|314917217|gb|EFS81048.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA1]
 gi|314921717|gb|EFS85548.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA3]
 gi|314931076|gb|EFS94907.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL067PA1]
 gi|314955055|gb|EFS99461.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL027PA1]
 gi|315099486|gb|EFT71462.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL059PA2]
 gi|327454532|gb|EGF01187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA3]
 gi|327456602|gb|EGF03257.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL083PA2]
 gi|328755586|gb|EGF69202.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA1]
 gi|328756913|gb|EGF70529.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL025PA2]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|303246049|ref|ZP_07332330.1| Adenosinetriphosphatase [Desulfovibrio fructosovorans JJ]
 gi|302492445|gb|EFL52316.1| Adenosinetriphosphatase [Desulfovibrio fructosovorans JJ]
          Length = 503

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R V+L GP G GK+ LA   + +S +  FS     L
Sbjct: 254 PPRGVLLYGPPGCGKTLLARAVAHESGARFFSVSGPEL 291


>gi|222054983|ref|YP_002537345.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
 gi|221564272|gb|ACM20244.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32]
          Length = 616

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 43/196 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------DTRKP 110
           ++LVGP G+GK+ LA   + ++    FS  A     + +                     
Sbjct: 210 ILLVGPPGTGKTLLARAVAGEAGVAFFSISASQFIEMFVGVGASRVRDLFSNAKKAAPSI 269

Query: 111 VLLEDIDLLDF----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V ++++D +            ++      QL   ++    ++  +++ A   P      L
Sbjct: 270 VFIDELDAVGRSRGAGFGGGHDEREQTLNQLLSEMDGFDPHEEVIVIAATNRPDVLDPAL 329

Query: 156 PDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V I  PD    E+++      R+I +D ++   I+ R    +  A
Sbjct: 330 ------LRPGRFDRHVVIDRPDLRDREQILKVHA--RKIRLDPQVDLSIIARGTPGMTGA 381

Query: 213 EKLVDKMDNLALSRGM 228
             L + ++  A+    
Sbjct: 382 -DLENLINEAAIQAAR 396


>gi|195390229|ref|XP_002053771.1| GJ24070 [Drosophila virilis]
 gi|194151857|gb|EDW67291.1| GJ24070 [Drosophila virilis]
          Length = 444

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 222 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 273


>gi|158340534|ref|YP_001521528.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158310775|gb|ABW32389.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 251

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 37/160 (23%)

Query: 25  EEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           E QL        F F     ++   L+              W       +++ GPSG+GK
Sbjct: 58  EAQLPYGKSWTNFEFAHVPTLNPAALME-------FAQTTHWLE-SGSNILIFGPSGTGK 109

Query: 78  SCLANIWSDK------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + +++                               +        +D    ++++D+  +
Sbjct: 110 THVSSALGASIIELGKRVKFVTATTLVQQLQLAKLQLELQSLLSKLDRYDLLIIDDLGYV 169

Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             +D +   LF +I +      SLL+TA      W    P
Sbjct: 170 QKSDVETSVLFELI-AHRYERKSLLITANQPFSQWDSIFP 208


>gi|119186983|ref|XP_001244098.1| hypothetical protein CIMG_03539 [Coccidioides immitis RS]
 gi|303317368|ref|XP_003068686.1| 26S protease regulatory subunit 6A, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240108367|gb|EER26541.1| 26S protease regulatory subunit 6A, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320038641|gb|EFW20576.1| 26S protease regulatory subunit 6A [Coccidioides posadasii str.
           Silveira]
          Length = 462

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 248 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 307

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 365

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 366 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMTVDDGV 401


>gi|150388870|ref|YP_001318919.1| IstB ATP binding domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150389280|ref|YP_001319329.1| IstB ATP binding domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150389548|ref|YP_001319597.1| IstB ATP binding domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150389882|ref|YP_001319931.1| IstB ATP binding domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150390605|ref|YP_001320654.1| IstB ATP binding domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150391292|ref|YP_001321341.1| IstB ATP binding domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150391579|ref|YP_001321628.1| IstB ATP binding domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150391667|ref|YP_001321716.1| IstB ATP binding domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150391772|ref|YP_001321821.1| IstB ATP binding domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150392363|ref|YP_001322412.1| IstB ATP binding domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149948732|gb|ABR47260.1| IstB domain protein ATP-binding protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949142|gb|ABR47670.1| IstB domain protein ATP-binding protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949410|gb|ABR47938.1| IstB domain protein ATP-binding protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949744|gb|ABR48272.1| IstB domain protein ATP-binding protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950467|gb|ABR48995.1| IstB domain protein ATP-binding protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951154|gb|ABR49682.1| IstB domain protein ATP-binding protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951441|gb|ABR49969.1| IstB domain protein ATP-binding protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951529|gb|ABR50057.1| IstB domain protein ATP-binding protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951634|gb|ABR50162.1| IstB domain protein ATP-binding protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149952225|gb|ABR50753.1| IstB domain protein ATP-binding protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 247

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 24/120 (20%)

Query: 61  SWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104
            W  R+  +IL+GP G GKS L      K+    +     ++D+++              
Sbjct: 95  DWIDRMYNLILLGPPGVGKSHLCIALGYKAVEMGYKVSFTTMDNLMHCLKTQEISRKSKG 154

Query: 105 ----IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
               + +   ++++++  L  +  +    F +I+++H+  +SL++T+      W   L D
Sbjct: 155 KINNVLSSSLLIIDELGYLPISREEANLFFQLISALHE-QTSLIITSNKGLEDWTELLGD 213


>gi|325119019|emb|CBZ54571.1| putative ATPase, AAA family domain-containing protein [Neospora
           caninum Liverpool]
          Length = 1165

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P + V+L GP GSGK+ LA   +++
Sbjct: 458 PPKGVLLYGPPGSGKTHLARAVAEE 482


>gi|303244216|ref|ZP_07330553.1| 26S proteasome subunit P45 family [Methanothermococcus okinawensis
           IH1]
 gi|302485343|gb|EFL48270.1| 26S proteasome subunit P45 family [Methanothermococcus okinawensis
           IH1]
          Length = 408

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++ ++    +   L    I     ++ +
Sbjct: 182 PPKGVLLYGPPGTGKTLLAKAVAHETNASFIKIVGSELVKKFIGEGAKLVKD 233


>gi|301770835|ref|XP_002920836.1| PREDICTED: 26S protease regulatory subunit 4-like [Ailuropoda
           melanoleuca]
          Length = 454

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 232 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 283


>gi|195494266|ref|XP_002094763.1| GE22001 [Drosophila yakuba]
 gi|194180864|gb|EDW94475.1| GE22001 [Drosophila yakuba]
          Length = 1006

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92
             +E  V +++    WPSR               V+L GP G+GK+ L            
Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            S +A S +  +I  + P LL     +  ++  + ++ N        +L 
Sbjct: 771 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818


>gi|167586457|ref|ZP_02378845.1| recombination factor protein RarA [Burkholderia ubonensis Bu]
          Length = 436

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 22/170 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQAKDTLNRTGRH-TIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +    
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLT 164

Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           DD + +++ +    A   +  D K    +V   +     A + ++ ++  
Sbjct: 165 DDEMRQLLKRAQEIALEGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211


>gi|126667375|ref|ZP_01738347.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17]
 gi|126628131|gb|EAZ98756.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17]
          Length = 445

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 66/174 (37%), Gaps = 25/174 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+  A + ++ S    F N++  L  +                   DT L
Sbjct: 52  MILWGPPGVGKTTFAQLLANVSD-LAFENVSAVLSGVKDIRAAVERARARKQGSGQDTLL 110

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + + + A T   S+ +    L SR +   V  +   +
Sbjct: 111 FVDEVHRFNKSQQDAFLPHIEDGTFIFVGATTENPSFELNSA-LLSRTR---VYVLKNLE 166

Query: 175 DDFLEKVIVKMFADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           DD +++++++  +       ++ + + + A +          A + ++ ++  A
Sbjct: 167 DDDIQRLLIRALSAEEGFGGRLRVAEDVLAMMASAAS---GDARRALNILEVAA 217


>gi|308805464|ref|XP_003080044.1| PRS6A_LYCES 26S protease regulatory subunit 6A homolog (ISS)
           [Ostreococcus tauri]
 gi|116058503|emb|CAL53692.1| PRS6A_LYCES 26S protease regulatory subunit 6A homolog (ISS)
           [Ostreococcus tauri]
          Length = 425

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +         L  + I     ++ +
Sbjct: 205 PPKGVLLYGPPGTGKTLIARACAAQTNAAYLKLAGPLLVQMFIGDGAKLVRD 256


>gi|91086399|ref|XP_974859.1| PREDICTED: similar to 26S protease regulatory subunit 4 [Tribolium
           castaneum]
 gi|270010293|gb|EFA06741.1| hypothetical protein TcasGA2_TC009675 [Tribolium castaneum]
          Length = 438

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267


>gi|158291405|ref|XP_312923.4| AGAP003215-PA [Anopheles gambiae str. PEST]
 gi|158291407|ref|XP_312924.4| AGAP003216-PA [Anopheles gambiae str. PEST]
 gi|157017759|gb|EAA08386.4| AGAP003215-PA [Anopheles gambiae str. PEST]
 gi|157017760|gb|EAA08387.4| AGAP003216-PA [Anopheles gambiae str. PEST]
          Length = 438

 Score = 42.1 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267


>gi|301787485|ref|XP_002929160.1| PREDICTED: LOW QUALITY PROTEIN: spastin-like [Ailuropoda
           melanoleuca]
          Length = 645

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 403 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 452


>gi|255956331|ref|XP_002568918.1| Pc21g19270 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590629|emb|CAP96824.1| Pc21g19270 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 820

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374

Query: 155 L 155
           L
Sbjct: 375 L 375


>gi|193617698|ref|XP_001948523.1| PREDICTED: 26S protease regulatory subunit 4-like [Acyrthosiphon
           pisum]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|154296359|ref|XP_001548611.1| hypothetical protein BC1G_13006 [Botryotinia fuckeliana B05.10]
 gi|150843464|gb|EDN18657.1| hypothetical protein BC1G_13006 [Botryotinia fuckeliana B05.10]
          Length = 960

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             ++L GP G+GK+ LA   + +S +T        ++ + +   +
Sbjct: 684 PGLLLYGPPGTGKTLLAKAVAKESGATVLEISGAEVNDMYVGEGE 728


>gi|148700412|gb|EDL32359.1| Werner helicase interacting protein 1, isoform CRA_b [Mus musculus]
          Length = 590

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 279 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 333

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 334 SFFKRKTILFIDEIHRFNKSQQD 356


>gi|27383310|ref|NP_774839.1| transposase [Bradyrhizobium japonicum USDA 110]
 gi|27356485|dbj|BAC53464.1| bll8199 [Bradyrhizobium japonicum USDA 110]
          Length = 287

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L++   + R+  L E +
Sbjct: 98  QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFFNVVDLVNRLETETRNGRQGRLAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206


>gi|66806375|ref|XP_636910.1| cell division cycle protein 48 [Dictyostelium discoideum AX4]
 gi|4996891|gb|AAB40928.2| cell division cycle protein 48 [Dictyostelium discoideum]
 gi|60465285|gb|EAL63377.1| cell division cycle protein 48 [Dictyostelium discoideum AX4]
          Length = 793

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 235 PPKGILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 295 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 354

Query: 155 L 155
           L
Sbjct: 355 L 355



 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 508 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKA 564


>gi|313821991|gb|EFS59705.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA1]
 gi|313824113|gb|EFS61827.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA2]
 gi|313826480|gb|EFS64194.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL063PA1]
 gi|314926566|gb|EFS90397.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL036PA3]
 gi|314961368|gb|EFT05469.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA2]
 gi|314980289|gb|EFT24383.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL072PA2]
 gi|314987373|gb|EFT31464.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA2]
 gi|314989086|gb|EFT33177.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA3]
 gi|315086079|gb|EFT58055.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL002PA3]
 gi|315087665|gb|EFT59641.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL072PA1]
 gi|327333318|gb|EGE75038.1| putative cell division protein [Propionibacterium acnes HL096PA3]
 gi|327445204|gb|EGE91858.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL013PA2]
 gi|332674668|gb|AEE71484.1| cell division protease FtsH [Propionibacterium acnes 266]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|306845140|ref|ZP_07477720.1| transposase [Brucella sp. BO1]
 gi|306274555|gb|EFM56350.1| transposase [Brucella sp. BO1]
          Length = 244

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 55/125 (44%), Gaps = 24/125 (19%)

Query: 67  VILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLE---DI 116
           ++LVG +G+GKS L+  ++        + R     ++   L++   + ++  L +    +
Sbjct: 101 IVLVGGTGTGKSHLSIAFARALIRNGARGRFYNVVDLVNRLETEARNGKQGRLADFITRL 160

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           D +  ++             LFH+I+ +++  +S+++T       W     D    + AA
Sbjct: 161 DFVIMDELGYLPFAQAGGQLLFHLISRLYER-TSIIVTTNLTFGEWPTVFGDAK--MTAA 217

Query: 166 TVVKI 170
            + ++
Sbjct: 218 LLDRL 222


>gi|303232661|ref|ZP_07319346.1| recombination factor protein RarA [Atopobium vaginae PB189-T1-4]
 gi|302481147|gb|EFL44222.1| recombination factor protein RarA [Atopobium vaginae PB189-T1-4]
          Length = 471

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 22/140 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------DSILIDTRKPVLLEDIDLLD 120
           +IL GPSG+GK+ LA+I +  + +   +  A S       D+I   + +        +L 
Sbjct: 67  IILYGPSGTGKTTLAHIIARYTHAHVVTMSAISATVKDVRDTISTASSRLYTRRQRTILF 126

Query: 121 FNDTQLFHIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            ++    H  N   Q          + +L+ A T    + V    L SR   + +++++ 
Sbjct: 127 LDEI---HRFNRSQQDALLEAVEMRTIILIGATTENPYFEVNSA-LISR---SRIIELTS 179

Query: 173 PDDDFLEKVIVKMFAD-RQI 191
             DD + KVI +   D R +
Sbjct: 180 LSDDDIAKVINRALTDERGL 199


>gi|302389033|ref|YP_003824854.1| AAA family ATPase, CDC48 subfamily [Thermosediminibacter oceani DSM
           16646]
 gi|302199661|gb|ADL07231.1| AAA family ATPase, CDC48 subfamily [Thermosediminibacter oceani DSM
           16646]
          Length = 733

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 34/166 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTRKP 110
           ++L GP G+GK+ +A   + ++ +                   + + +  D         
Sbjct: 243 ILLYGPPGTGKTLIARAIASETEAHFLLVNGPEIMHKYYGESEARLRQVFDEAKKKAPSI 302

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           + L++ID +    T            QL  +++ +    + +++ A   P    +  P L
Sbjct: 303 IFLDEIDAIAPRRTEVYGDVEKRVVAQLLALMDGLEARGNVIVLAATNVP---DLIDPAL 359

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQ 203
               +    + I +PD    ++++      R + + + +   Y+  
Sbjct: 360 RRPGRFDREILIDVPDQRGRKEIL--AIHTRGMALAEDVSLEYLAA 403


>gi|307727977|ref|YP_003911190.1| IstB domain-containing protein ATP-binding protein [Burkholderia
           sp. CCGE1003]
 gi|307588502|gb|ADN61899.1| IstB domain protein ATP-binding protein [Burkholderia sp. CCGE1003]
          Length = 250

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 34/154 (22%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVR------LIDSWPSWPSRVVILVGPSGSGKSCLANIW- 84
           FP    I   D     A E  VR       IDS     +  ++LVG  G+GK+ LA    
Sbjct: 57  FPAYRDIGGFDFSCSDANEALVRQLYECEFIDS-----AHNIVLVGGPGTGKTHLATAIG 111

Query: 85  -SDKSRSTRFSNIAKSLDSILIDTRKPVL---------LEDIDLLDFND----------- 123
                   R      +++ +    ++ ++         L   DL+  ++           
Sbjct: 112 VQALEHHRRRVRFFSTIELVNALEQEKLVGKPGQLATRLMYADLVVLDELGYLPFSQTGG 171

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             LFH+++ +++  +S+++T       W     D
Sbjct: 172 ALLFHLLSKLYER-TSIIITTNLSFAEWASVFDD 204


>gi|259483400|tpe|CBF78760.1| TPA: Cell division control protein 48
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AWS6] [Aspergillus
           nidulans FGSC A4]
          Length = 814

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 249 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 308

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 309 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 368

Query: 155 L 155
           L
Sbjct: 369 L 369


>gi|323339472|ref|ZP_08079751.1| AAA family ATPase [Lactobacillus ruminis ATCC 25644]
 gi|323093086|gb|EFZ35679.1| AAA family ATPase [Lactobacillus ruminis ATCC 25644]
          Length = 424

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 67/167 (40%), Gaps = 23/167 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIA----KSLDSILIDTRKP----VLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A    K L+ + ++ +      ++L++I 
Sbjct: 41  MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDSKKELEQVALEAKMSGTVILMLDEIH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            L          +    +    +L+ A T      +  P + SR     + ++    ++ 
Sbjct: 101 RLTKPKQDFLLPM---LESGKIILIGATTENPYISIN-PAIRSR---TQIFEVQKLSEED 153

Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++  I +   D  R +      +D     ++ +     L  A   ++
Sbjct: 154 IKTAINRALQDDERGLGKYHVVLDDDAMIHLARATNGDLRSALNGLE 200


>gi|184185457|gb|ACC68862.1| proteasome 26S ATPase subunit 1 (predicted) [Rhinolophus
           ferrumequinum]
          Length = 356

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 134 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 185


>gi|163754796|ref|ZP_02161918.1| cell division cycle protein 48-related protein [Kordia algicida
           OT-1]
 gi|161325737|gb|EDP97064.1| cell division cycle protein 48-related protein [Kordia algicida
           OT-1]
          Length = 430

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 43/193 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           ++L GP G GK+ +A   + +  +   +                N+ +  +    +    
Sbjct: 189 ILLYGPPGCGKTHIARATAGEINANFINIGINDILDMWIGNSEKNLHEIFEVARANKPCV 248

Query: 111 VLLEDIDLLDFNDTQL-----FHIINSIH--------QYDSSLLMTARTFPVSWG--VCL 155
           V +++ID L  N   +       +IN             D  L++ A   P         
Sbjct: 249 VFIDEIDALGANRNDVNKTSGRSVINQFLAELDGIDADNDGILVLGATNAPWHLDPAFRR 308

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSLVFAEK 214
           P    R     ++ +S PD +    +      ++      +   Y+ + +  +    A  
Sbjct: 309 P---GRFD--RIIFVSPPDVEAKAAIFNIHLKEK----PTETIDYMALAKAAKEFSGA-D 358

Query: 215 LVDKMDNLALSRG 227
           +   +D +A+ R 
Sbjct: 359 IQAAID-VAIERK 370


>gi|146161282|ref|XP_977097.2| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|146146796|gb|EAR86317.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + ++L GP G+GK+ LA   + ++  T FS  +  L S  +   + ++
Sbjct: 172 PWKGILLYGPPGTGKTYLAKACATETEGTFFSVSSADLVSKYVGESEKLI 221


>gi|114778010|ref|ZP_01452910.1| ATPase [Mariprofundus ferrooxydans PV-1]
 gi|114551616|gb|EAU54169.1| ATPase [Mariprofundus ferrooxydans PV-1]
          Length = 448

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 28/170 (16%)

Query: 68  ILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           I  GP G GK+ LA + +D +     + S ++     +    ++        LL  ++  
Sbjct: 60  IFWGPPGVGKTTLATVMADAAGIPFVQLSAVSAGKAEVQDVVKRARSAGQTWLLFLDEI- 118

Query: 126 LFHIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
             H  N   Q        D +L++   T      S       L SR +   +  +   D 
Sbjct: 119 --HRFNKAQQDVLLPCIEDGTLVLVGATTENPSFSLNNA---LLSRCRVIVLQALQASD- 172

Query: 176 DFLEKVIVKMF------ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
                VI+K          +   +D     ++ +  +    +A   ++ +
Sbjct: 173 ---VAVILKRACRYLGDQAKAFSLDDDALVWLAENSDGDARYALNALESL 219


>gi|58261852|ref|XP_568336.1| endopeptidase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134118417|ref|XP_772095.1| hypothetical protein CNBM1410 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254702|gb|EAL17448.1| hypothetical protein CNBM1410 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57230509|gb|AAW46819.1| endopeptidase, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 464

 Score = 42.1 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P +  ++ GP G+GK+ LA   + ++ +        +L  + +     ++ +  +L 
Sbjct: 245 PPKGCLMYGPPGTGKTLLARACAAQTNACYLKLAGPALVQMYLGDGAKLVRDAFELA 301


>gi|315102008|gb|EFT73984.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL046PA1]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.076,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|289428980|ref|ZP_06430660.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165]
 gi|289157981|gb|EFD06204.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165]
 gi|328758404|gb|EGF72020.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL020PA1]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.076,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|295129829|ref|YP_003580492.1| Cell division protein FtsH [Propionibacterium acnes SK137]
 gi|310946756|sp|D4HA34|FTSH_PROAS RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|291376079|gb|ADD99933.1| Cell division protein FtsH [Propionibacterium acnes SK137]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.076,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|218440251|ref|YP_002378580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218172979|gb|ACK71712.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 628

 Score = 42.1 bits (98), Expect = 0.076,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 45/214 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 268

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 328

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       V +  PD      ++     ++++   + +   I +R       A
Sbjct: 329 ------MRPGRFDRQVIVDAPDVKGRLAILEVHARNKKLA-PEVVLDAIARRTP-GFSGA 380

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             L + ++  A+       R  A  +L+     D
Sbjct: 381 -DLANLLNEAAILTARR--RKEAITMLEIDDAID 411


>gi|50841750|ref|YP_054977.1| putative cell division protein FtsH [Propionibacterium acnes
           KPA171202]
 gi|289424180|ref|ZP_06425963.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187]
 gi|50839352|gb|AAT82019.1| putative cell division protein FtsH [Propionibacterium acnes
           KPA171202]
 gi|289154877|gb|EFD03559.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187]
 gi|313802737|gb|EFS43955.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA2]
 gi|313814558|gb|EFS52272.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL025PA1]
 gi|313828789|gb|EFS66503.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL063PA2]
 gi|313831709|gb|EFS69423.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL007PA1]
 gi|313834409|gb|EFS72123.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL056PA1]
 gi|313840400|gb|EFS78114.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL086PA1]
 gi|314969686|gb|EFT13784.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA1]
 gi|314974751|gb|EFT18846.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL053PA1]
 gi|314977052|gb|EFT21147.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL045PA1]
 gi|314985463|gb|EFT29555.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL005PA1]
 gi|315082135|gb|EFT54111.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL078PA1]
 gi|315097298|gb|EFT69274.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL038PA1]
 gi|315106292|gb|EFT78268.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL030PA1]
 gi|315110070|gb|EFT82046.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL030PA2]
 gi|327331332|gb|EGE73071.1| cell division protein FtsH [Propionibacterium acnes HL096PA2]
 gi|327447287|gb|EGE93941.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL043PA1]
 gi|327450266|gb|EGE96920.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL043PA2]
 gi|328761145|gb|EGF74689.1| cell division protein FtsH [Propionibacterium acnes HL099PA1]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.076,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|312384064|gb|EFR28883.1| hypothetical protein AND_02632 [Anopheles darlingi]
 gi|312384065|gb|EFR28884.1| hypothetical protein AND_02633 [Anopheles darlingi]
          Length = 438

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267


>gi|237800567|ref|ZP_04589028.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023427|gb|EGI03484.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +   +  A       I     V  +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVI------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++       +    R++ +  +  A ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGRRRLTLSDEGFAILMSAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDIELLQSLLGDSRR 239


>gi|297563373|ref|YP_003682347.1| IstB domain protein ATP-binding protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847821|gb|ADH69841.1| IstB domain protein ATP-binding protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 230

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 26/130 (20%)

Query: 64  SRVVILVGPSGSGKSC-------------------LANIWSDKSRSTRFSNIAKSLDSIL 104
           +  ++L G +G+GK+                    LA  + D   + R           L
Sbjct: 88  APSLMLWGGTGTGKTHAAFGAVRRIALTGPIRFGFLATTFPDLYAALRPGAGNDEERERL 147

Query: 105 ---IDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD- 157
              + +   +LL+D+       + +   + I+N  +     +++T+   P +    L D 
Sbjct: 148 MRRVLSVPVLLLDDLGTTKSSLWTEETTYRIVNHRYNRMLPVVITSNEPPAALPELLGDR 207

Query: 158 LCSRLKAATV 167
           + SRL   T 
Sbjct: 208 IASRLIEMTT 217


>gi|227552635|ref|ZP_03982684.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
           TX1330]
 gi|227178261|gb|EEI59233.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
           TX1330]
          Length = 459

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 32/176 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL+++ 
Sbjct: 73  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVH 132

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++    +
Sbjct: 133 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 183

Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLA 223
             ++  +     D  R +      +D++     +  + R+        ++ ++  A
Sbjct: 184 QDIQLAVKHALKDKERGLGQQAIQLDEEA----LLHLSRATNGDLRSALNGLELAA 235


>gi|195145006|ref|XP_002013487.1| GL24166 [Drosophila persimilis]
 gi|194102430|gb|EDW24473.1| GL24166 [Drosophila persimilis]
          Length = 417

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 195 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 246


>gi|146319649|ref|YP_001199361.1| multidrug ABC transporter ATP-binding protein [Streptococcus suis
           05ZYH33]
 gi|146321847|ref|YP_001201558.1| multidrug ABC transporter ATP-binding protein [Streptococcus suis
           98HAH33]
 gi|253752647|ref|YP_003025788.1| ABC transporter ATP-binding protein [Streptococcus suis SC84]
 gi|253754473|ref|YP_003027614.1| ABC transporter ATP-binding protein [Streptococcus suis P1/7]
 gi|253756406|ref|YP_003029546.1| ABC transporter ATP-binding protein [Streptococcus suis BM407]
 gi|145690455|gb|ABP90961.1| multidrug ABC transporter, ATP-binding protein [Streptococcus suis
           05ZYH33]
 gi|145692653|gb|ABP93158.1| multidrug ABC transporter, ATP-binding protein [Streptococcus suis
           98HAH33]
 gi|251816936|emb|CAZ52585.1| ABC transporter ATP-binding membrane protein [Streptococcus suis
           SC84]
 gi|251818870|emb|CAZ56713.1| ABC transporter ATP-binding membrane protein [Streptococcus suis
           BM407]
 gi|251820719|emb|CAR47481.1| ABC transporter ATP-binding membrane protein [Streptococcus suis
           P1/7]
 gi|292559266|gb|ADE32267.1| ATP-binding protein: Amino acid transport [Streptococcus suis GZ1]
 gi|319759063|gb|ADV71005.1| multidrug ABC transporter, ATP-binding protein [Streptococcus suis
           JS14]
          Length = 525

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 24/158 (15%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            +  +++G SGSGKS LA I    +++++       +D I +       ++D       +
Sbjct: 342 GKKYLILGESGSGKSSLALI---LTKNSQLQAGDIYVDQISLSDLSYQAIQDKIAYLPQE 398

Query: 124 TQLFH---IINSIHQYDSSLLMTARTFPV---SWGVCLPDLCSRLKAATVVKISLPDDDF 177
             LFH   + N             R  P     + +   +L SR  +   +   + DD  
Sbjct: 399 GSLFHDTVLYNLTM---------GREVPEDRLMFHIKTVNLDSRFPSYASLSEEISDDSG 449

Query: 178 LEKVI-VKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L      ++   R +  DK +   ++  ++ SL   ++
Sbjct: 450 LSGGQKQRLLLIRALLQDKDI---LL--LDESLSALDQ 482


>gi|109018123|ref|XP_001096627.1| PREDICTED: nuclear VCP-like isoform 4 [Macaca mulatta]
          Length = 856

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 356

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 357 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 416

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +P +   E+++  +   R++ + + 
Sbjct: 417 DPALR------RAGRFDREICLGIPGEASRERILQTLC--RKLRLPQA 456



 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 37/164 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P+ V+ L GP G GK+ LA   +++S     S     L ++ +   +             
Sbjct: 615 PAGVL-LAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNS 673

Query: 110 -PVLL--EDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152
            P ++  +++D L                 QL   ++ +       +M A   P      
Sbjct: 674 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPA 733

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
           +  P    RL     V +  P D      I+K            
Sbjct: 734 ILRP---GRLDKTLFVGLPPPTDRL---AILKTITKNGTKPPLD 771


>gi|5531245|emb|CAB51031.1| l(3)70Da [Drosophila melanogaster]
          Length = 1006

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92
             +E  V +++    WPSR               V+L GP G+GK+ L            
Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            S +A S +  +I  + P LL     +  ++  + ++ N        +L 
Sbjct: 771 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818


>gi|332375398|gb|AEE62840.1| unknown [Dendroctonus ponderosae]
          Length = 438

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267


>gi|323331380|gb|EGA72798.1| Vps4p [Saccharomyces cerevisiae AWRI796]
          Length = 437

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 41/140 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 165 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 224

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152
                 ++++D L                T+L   +N + +     L++ A   P     
Sbjct: 225 KPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 284

Query: 153 -----------VCLPDLCSR 161
                      + LPDL +R
Sbjct: 285 AIRRRFERRIYIPLPDLAAR 304


>gi|299536710|ref|ZP_07050020.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298727824|gb|EFI68389.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 675

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 45/205 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 201 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDKAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD    E ++     ++ +     LAA + QR       A
Sbjct: 321 ------LRPGRFDRQITVGHPDVKGREAILKVHARNKPLADTVDLAA-VAQRTP-GFSGA 372

Query: 213 EKLVDKMDNLAL--SRGMGITRSLA 235
             L + ++  AL  +R    T ++A
Sbjct: 373 -DLENLLNEAALVAARKSKRTINMA 396


>gi|289740351|gb|ADD18923.1| 26S proteasome regulatory complex ATPase RPT2 [Glossina morsitans
           morsitans]
          Length = 439

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268


>gi|260773038|ref|ZP_05881954.1| ATPase AAA family [Vibrio metschnikovii CIP 69.14]
 gi|260612177|gb|EEX37380.1| ATPase AAA family [Vibrio metschnikovii CIP 69.14]
          Length = 449

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 80/196 (40%), Gaps = 32/196 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA + ++ + +                + I ++ ++  +  R  + +
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIDRARENQRVGRRTILFV 113

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +  +   + A T   S+ +    L SR   A V K++  
Sbjct: 114 DEVHRFNKSQQDAFLPY---IEDGTVTFIGATTENPSFELNNA-LLSR---ARVYKLTSL 166

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAY---IVQRMER--------SLVFAEKLVDKMDNL 222
             D + + + +   D+Q  + +  A +   ++QR+          SL + E L D     
Sbjct: 167 SVDEILQTLQQAIDDKQKGLGQHPADFHDNVLQRLAELVNGDARMSLNYLELLYDMASQD 226

Query: 223 ALSRGMGITRSLAAEV 238
           A      IT SL AEV
Sbjct: 227 A-QGRKQITLSLLAEV 241


>gi|212528130|ref|XP_002144222.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Penicillium marneffei ATCC 18224]
 gi|210073620|gb|EEA27707.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Penicillium marneffei ATCC 18224]
          Length = 741

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ LAN ++        S  A S+ S +    +  L E  D  
Sbjct: 208 PPRGVLLHGPPGCGKTMLANAFAADLGVPFISISAPSIVSGMSGESEKALREHFDEA 264



 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++SR+   S
Sbjct: 518 VLLWGPPGCGKTLLAKAVANESRANFIS 545


>gi|207340221|gb|EDZ68640.1| YPR173Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 397

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 41/140 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 125 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 184

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152
                 ++++D L                T+L   +N + +     L++ A   P     
Sbjct: 185 KPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 244

Query: 153 -----------VCLPDLCSR 161
                      + LPDL +R
Sbjct: 245 AIRRRFERRIYIPLPDLAAR 264


>gi|195112656|ref|XP_002000888.1| GI22277 [Drosophila mojavensis]
 gi|193917482|gb|EDW16349.1| GI22277 [Drosophila mojavensis]
          Length = 439

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268


>gi|169825698|ref|YP_001695856.1| cell division protease ftsH-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990186|gb|ACA37726.1| Cell division protease ftsH-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 658

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 45/205 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 185 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 244

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 245 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDKAL 304

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD    E ++     ++ +     LAA + QR       A
Sbjct: 305 ------LRPGRFDRQITVGHPDVKGREAILKVHARNKPLADTVDLAA-VAQRTP-GFSGA 356

Query: 213 EKLVDKMDNLAL--SRGMGITRSLA 235
             L + ++  AL  +R    T ++A
Sbjct: 357 -DLENLLNEAALVAARKSKRTINMA 380


>gi|153009313|ref|YP_001370528.1| recombination factor protein RarA [Ochrobactrum anthropi ATCC
           49188]
 gi|151561201|gb|ABS14699.1| AAA ATPase central domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 438

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 49  ASGSLGSMIFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKKVFETA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +     +R + +D++    +V+  +     A  L +++  
Sbjct: 160 -ARVLTFHPHDGESIATLLTRAEEQEERPLPLDEEARVSLVRMADGDGRAALTLAEEVWR 218

Query: 222 LA 223
            A
Sbjct: 219 AA 220


>gi|149196409|ref|ZP_01873464.1| ATPase, AAA family protein [Lentisphaera araneosa HTCC2155]
 gi|149140670|gb|EDM29068.1| ATPase, AAA family protein [Lentisphaera araneosa HTCC2155]
          Length = 430

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 23/169 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFNDTQ 125
           +I  GP G+GK+ LA+I S  + +   +    ++DS + + RK V   ++        T 
Sbjct: 49  IIFTGPPGTGKTSLASIISKHTEADFIA--LSAIDSSVSEVRKAVKAADEARKFSGRKTV 106

Query: 126 LF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           LF    H  N   Q        + ++     T         P LCSR   + +  +   +
Sbjct: 107 LFVDEIHRFNKAQQDSLLKDIENGTVRFIGATTHNPGFYLTPALCSR---SLIFTLKPLE 163

Query: 175 ----DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
                  LE  + K     + ++  D++   ++ +  E     A  +++
Sbjct: 164 ASAVKSLLEAKMTKIMKALEAELQFDEEGLKFLSENCEGDARRALTVIE 212


>gi|126653288|ref|ZP_01725399.1| cell division protein [Bacillus sp. B14905]
 gi|126589962|gb|EAZ84091.1| cell division protein [Bacillus sp. B14905]
          Length = 660

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 45/205 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 185 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 244

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 245 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDKAL 304

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD    E ++     ++ +     LAA + QR       A
Sbjct: 305 ------LRPGRFDRQITVGHPDVKGREAILKVHARNKPLADTVDLAA-VAQRTP-GFSGA 356

Query: 213 EKLVDKMDNLAL--SRGMGITRSLA 235
             L + ++  AL  +R    T ++A
Sbjct: 357 -DLENLLNEAALVAARKSKRTINMA 380


>gi|124028002|ref|YP_001013322.1| proteasome-activating nucleotidase [Hyperthermus butylicus DSM
           5456]
 gi|123978696|gb|ABM80977.1| proteasome-activating nucleotidase [Hyperthermus butylicus DSM
           5456]
          Length = 405

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ LA   +  + +T    +A       +     ++ E
Sbjct: 164 PPKGVLLYGPPGCGKTLLAKAVASMTNATFIRVVASEFVHKYVGEGARIVRE 215


>gi|308799665|ref|XP_003074613.1| cell division protein FtsH-like protein (ISS) [Ostreococcus tauri]
 gi|116000784|emb|CAL50464.1| cell division protein FtsH-like protein (ISS) [Ostreococcus tauri]
          Length = 659

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 35/159 (22%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111
           +LVGP G+GK+ LA   + +S  + F   A     + +                     +
Sbjct: 397 LLVGPPGTGKTLLARAVAGESGVSFFPVAASEFVELFVGRGAARVRELFAEARKSQPAII 456

Query: 112 LLEDIDLL------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
            ++++D +        N+       QL   ++   +  S L++ A   P +    L  L 
Sbjct: 457 FIDELDAVGSRRGAGLNEERDQTLNQLLVEMDGFSKDQSILILAATNRPDALDPAL--LR 514

Query: 160 -SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             RL     V +  P      +++      R + +++ +
Sbjct: 515 PGRL--TRRVFVGPPSQQGRAQILGVHL--RGLDLEEDV 549


>gi|94971570|ref|YP_593618.1| Holliday junction DNA helicase RuvB [Candidatus Koribacter
           versatilis Ellin345]
 gi|123381145|sp|Q1IHV6|RUVB_ACIBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|94553620|gb|ABF43544.1| Holliday junction DNA helicase subunit RuvB [Candidatus Koribacter
           versatilis Ellin345]
          Length = 360

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 29/202 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----DSILIDTR----KPVLLEDIDL 118
           V+L GP G GK+ LANI +++ ++        +L    D   I T     + + ++++  
Sbjct: 78  VLLYGPPGLGKTTLANIIANEMQAQFQQTSGPTLQIKGDLTAILTNVRDKQVLFIDEVHR 137

Query: 119 LDFNDTQLFHIINSIHQYDSSLLM---------TARTFPVSW-------GVCLPDLCSRL 162
           L     +L  + +++  Y   +++         T    P +        G+    L SR 
Sbjct: 138 LQPALEEL--LYSAVEDYKLDIIIGQGPSARTHTIDVAPFTLVAATTRAGLLSAPLRSRF 195

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
               V+++     + L+ ++ +      + ID+  AA I  R   +   A +L+ ++ + 
Sbjct: 196 --GIVLRLEFYTTEDLKIILKRSAEILNVEIDEGGAAEIATRCRGTPRIANRLLRRVRDY 253

Query: 223 ALSRG-MGITRSLAAEVLKETQ 243
           A  RG   I R  A + L+  +
Sbjct: 254 AQVRGAGKIDRETAQKALEMLE 275


>gi|62460402|ref|NP_001014855.1| 26S protease regulatory subunit 4 [Bos taurus]
 gi|59858331|gb|AAX09000.1| proteasome 26S ATPase subunit 1 [Bos taurus]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|1054845|emb|CAA63364.1| END13 [Saccharomyces cerevisiae]
          Length = 437

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 41/140 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 165 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 224

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152
                 ++++D L                T+L   +N + +     L++ A   P     
Sbjct: 225 KPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 284

Query: 153 -----------VCLPDLCSR 161
                      + LPDL +R
Sbjct: 285 AIRRRFERRIYIPLPDLAAR 304


>gi|24649446|ref|NP_524469.2| proteasome 26S subunit subunit 4 ATPase [Drosophila melanogaster]
 gi|195331448|ref|XP_002032413.1| GM23527 [Drosophila sechellia]
 gi|195573289|ref|XP_002104626.1| GD18337 [Drosophila simulans]
 gi|30581054|sp|P48601|PRS4_DROME RecName: Full=26S protease regulatory subunit 4; Short=P26s4
 gi|7301070|gb|AAF56205.1| proteasome 26S subunit subunit 4 ATPase [Drosophila melanogaster]
 gi|16198307|gb|AAL13988.1| SD02658p [Drosophila melanogaster]
 gi|194121356|gb|EDW43399.1| GM23527 [Drosophila sechellia]
 gi|194200553|gb|EDX14129.1| GD18337 [Drosophila simulans]
 gi|220956224|gb|ACL90655.1| Pros26.4-PA [synthetic construct]
          Length = 439

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268


>gi|6325431|ref|NP_015499.1| Vps4p [Saccharomyces cerevisiae S288c]
 gi|1706647|sp|P52917|VPS4_YEAST RecName: Full=Vacuolar protein sorting-associated protein 4;
           AltName: Full=DOA4-independent degradation protein 6;
           AltName: Full=Protein END13; AltName: Full=Vacuolar
           protein-targeting protein 10
 gi|786322|gb|AAB68107.1| Vps4p [Saccharomyces cerevisiae]
 gi|151942944|gb|EDN61290.1| AAA ATPase [Saccharomyces cerevisiae YJM789]
 gi|190408096|gb|EDV11361.1| vacuolar protein sorting-associated protein VPS4 [Saccharomyces
           cerevisiae RM11-1a]
 gi|256272426|gb|EEU07408.1| Vps4p [Saccharomyces cerevisiae JAY291]
 gi|259150330|emb|CAY87133.1| Vps4p [Saccharomyces cerevisiae EC1118]
 gi|285815698|tpg|DAA11590.1| TPA: Vps4p [Saccharomyces cerevisiae S288c]
 gi|323335223|gb|EGA76513.1| Vps4p [Saccharomyces cerevisiae Vin13]
 gi|323346039|gb|EGA80330.1| Vps4p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 437

 Score = 42.1 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 41/140 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 165 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 224

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152
                 ++++D L                T+L   +N + +     L++ A   P     
Sbjct: 225 KPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 284

Query: 153 -----------VCLPDLCSR 161
                      + LPDL +R
Sbjct: 285 AIRRRFERRIYIPLPDLAAR 304


>gi|301050560|ref|ZP_07197431.1| transposase domain protein [Escherichia coli MS 185-1]
 gi|300297747|gb|EFJ54132.1| transposase domain protein [Escherichia coli MS 185-1]
          Length = 162

 Score = 42.1 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 24/115 (20%)

Query: 61  SW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------- 110
            W      V+L G SG GKS LA    D      +     S   +L + RK         
Sbjct: 7   DWVDAGENVLLFGASGLGKSHLAAAIVDGVVGQGYRARFYSAGELLQELRKARAQLKLNE 66

Query: 111 ----------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                     ++++D+  +  +  +   LF +I   ++   SL++T+      WG
Sbjct: 67  LLLKLDRYRVIVVDDLGYVKRDSAETGVLFELIAHRYERG-SLVITSNHPFSMWG 120


>gi|255722928|ref|XP_002546398.1| hypothetical protein CTRG_05876 [Candida tropicalis MYA-3404]
 gi|240130915|gb|EER30477.1| hypothetical protein CTRG_05876 [Candida tropicalis MYA-3404]
          Length = 754

 Score = 42.1 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 508 PTRGMLLFGPPGTGKTMLARAVATESKSTFFSVSAASLVSKYLGESEKLV 557


>gi|257387828|ref|YP_003177601.1| ATPase AAA [Halomicrobium mukohataei DSM 12286]
 gi|257170135|gb|ACV47894.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM
           12286]
          Length = 740

 Score = 42.1 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 62/164 (37%), Gaps = 33/164 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEE 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +      +++ A     S    
Sbjct: 282 APSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDS---V 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            P L    +    ++I +PD+   E+++      R + +   +A
Sbjct: 339 DPALRRPGRFDREIEIGVPDEVGREEILQ--IHTRGMPLSDDVA 380



 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   V+L GP G+GK+ +A   ++++ +   S
Sbjct: 495 PPSGVLLYGPPGTGKTLMAKAVANETDANFIS 526


>gi|195053572|ref|XP_001993700.1| GH19692 [Drosophila grimshawi]
 gi|193895570|gb|EDV94436.1| GH19692 [Drosophila grimshawi]
          Length = 439

 Score = 42.1 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268


>gi|194910105|ref|XP_001982075.1| GG12390 [Drosophila erecta]
 gi|195445240|ref|XP_002070237.1| GK11948 [Drosophila willistoni]
 gi|195505012|ref|XP_002099325.1| GE10845 [Drosophila yakuba]
 gi|190656713|gb|EDV53945.1| GG12390 [Drosophila erecta]
 gi|194166322|gb|EDW81223.1| GK11948 [Drosophila willistoni]
 gi|194185426|gb|EDW99037.1| GE10845 [Drosophila yakuba]
          Length = 439

 Score = 42.1 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268


>gi|194748000|ref|XP_001956437.1| btl [Drosophila ananassae]
 gi|190623719|gb|EDV39243.1| btl [Drosophila ananassae]
          Length = 1032

 Score = 42.1 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92
             +E  V +++    WPSR               V+L GP G+GK+ L            
Sbjct: 724 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 771

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            S +A S +  +I  + P LL     +  ++  + ++ N        +L 
Sbjct: 772 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 819


>gi|326536234|ref|YP_004300672.1| gp44 clamp-loader subunit [Acinetobacter phage 133]
 gi|47779197|gb|AAT38483.1| gp44 clamp-loader subunit [Acinetobacter phage 133]
          Length = 319

 Score = 42.1 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 67/175 (38%), Gaps = 35/175 (20%)

Query: 73  SGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKP--VLLEDIDL 118
            G+GK+ +A    +   +                    +  S L +  +P  +++++ D 
Sbjct: 53  PGTGKTTVARALCNGVDAHMLFVNGSDCKIDFVRGPLTTFASSLSNDGRPKVIVIDEFDR 112

Query: 119 LDFNDTQLFHI--INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
               D QL H+      +  + S+++TA     +    +  L SR   + V+K   P + 
Sbjct: 113 NGLQDAQL-HMRTFMEAYGDNCSVIITA----NNLEGIVKPLRSR---SRVIKFGTPSET 164

Query: 177 FLEKVIVKMFADRQI--------FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             + ++V+M    Q+         ++ K+   +V +   +     K+ + +D  +
Sbjct: 165 DRKSMMVQMVKRAQLICANEGIEILEPKVLGALVLQ---NFPDFRKVTNLLDLYS 216


>gi|45767857|gb|AAH67741.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Homo
           sapiens]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|313817473|gb|EFS55187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL046PA2]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|313772804|gb|EFS38770.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL074PA1]
 gi|313810944|gb|EFS48658.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL083PA1]
 gi|314964587|gb|EFT08687.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL082PA1]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|294464641|gb|ADE77829.1| unknown [Picea sitchensis]
          Length = 388

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 117 PPKGVLLYGPPGTGKTLLAKAIARESGAVFIN 148


>gi|255549242|ref|XP_002515675.1| Protein MSP1, putative [Ricinus communis]
 gi|223545218|gb|EEF46727.1| Protein MSP1, putative [Ricinus communis]
          Length = 387

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 35/150 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P + V+L GP G+GK+ LA   + +S +   +                 +A         
Sbjct: 114 PQKGVLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 173

Query: 107 TRKPVLLEDIDLLDFNDTQLFH--IINSIHQ------------YDSSLLMTARTFPVSWG 152
               + ++++D          H  + N   +                +++ A   P    
Sbjct: 174 QPAIIFIDEVDSFLGQRRSTDHEALTNMKTEFMALWDGFTTDHNARVMVLAATNRPSELD 233

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             +  L  RL      +I +PD      ++
Sbjct: 234 EAI--LR-RLP--QSFEIGIPDRRERAAIL 258


>gi|188591551|ref|YP_001796150.1| transposase, IS21 family [Cupriavidus taiwanensis]
 gi|170938946|emb|CAP63953.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424]
          Length = 243

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 30/128 (23%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-- 110
           +  I+   +     V+L+GPSG GK+ LA   + ++      +   +   +++       
Sbjct: 76  LAFIERAEN-----VVLLGPSGVGKTHLATALAYRATQAGIKSRFLTAADLMMQLATARQ 130

Query: 111 -----------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPV 149
                            +++++I  L F   +  LF   N +       S+++T+     
Sbjct: 131 QGRLREYFNRAVMGPRLLVVDEIGYLTFGREEANLF--FNVVAKRYERGSMVLTSNLPFA 188

Query: 150 SWGVCLPD 157
            W     D
Sbjct: 189 QWATAFAD 196


>gi|158523435|gb|ABW70832.1| AAA-family ATPase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 408

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 29/193 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS---------NIAKSLDSILIDTRKPVLLEDID 117
           +IL G  G GK+ LA I +   R   F          ++ K +          + L++I 
Sbjct: 39  LILCGKPGVGKTTLAKIIASSKRLEFFELSAVDSGVKDVKKIIADNQHLGSFVLFLDEIH 98

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
             + +   L        +    +L+  T              L SR     ++++   + 
Sbjct: 99  RFNKSQQDLLLPY---VESGKIILIGATTENPTYYLNNA---LVSR---VFILRLKRLNI 149

Query: 176 DFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
               K+I +      + A     ID  L   I    E       K+++ ++ + L     
Sbjct: 150 SETRKLIQRAITKDELLAKHSFEIDDDLYNAIHNYSE---GDCRKILNLLERMFLISDRT 206

Query: 230 ITRSLAAEVLKET 242
            T  L  ++    
Sbjct: 207 NTIHLDKDLFDRA 219


>gi|149486736|ref|XP_001517805.1| PREDICTED: similar to P26s4, partial [Ornithorhynchus anatinus]
          Length = 388

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 166 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 217


>gi|146282639|ref|YP_001172792.1| recombination factor protein RarA [Pseudomonas stutzeri A1501]
 gi|145570844|gb|ABP79950.1| ATPase, AAA family [Pseudomonas stutzeri A1501]
          Length = 441

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 75/208 (36%), Gaps = 28/208 (13%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        ++  GP G GK+ LA + +  S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEHGALHSMVFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEIAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   + +      + + ++    ++   +        L+
Sbjct: 155 --ARVYVLKSLDEAALRKLVTRALTEPKGLGELHLTLPEESFQMLLAAADGDGRRLLNLL 212

Query: 217 DKMDNLALSRGMGITRSLAAEVLKETQQ 244
           +   +LA  +G  I+  L  ++L ++++
Sbjct: 213 ENASDLA-EQGGVISTDLLQDLLGDSRR 239


>gi|157131453|ref|XP_001655853.1| 26S protease regulatory subunit [Aedes aegypti]
 gi|94468994|gb|ABF18346.1| 26S proteasome regulatory chain 4 [Aedes aegypti]
 gi|108871524|gb|EAT35749.1| 26S protease regulatory subunit [Aedes aegypti]
          Length = 438

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267


>gi|91791126|ref|YP_552076.1| IstB-like ATP-binding protein [Polaromonas sp. JS666]
 gi|91701007|gb|ABE47178.1| IstB-like ATP-binding protein [Polaromonas sp. JS666]
          Length = 275

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 49/113 (43%), Gaps = 23/113 (20%)

Query: 67  VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTRK------PVLLED 115
            +L+G  G+GK+ LA        + K +  RF +    ++ +  + R+       + L  
Sbjct: 103 AVLIGGPGTGKTHLATAIGVSGIAAKGKRVRFYSTVDLVNELEKEKREGKAGRIALALMR 162

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +DL+  ++             LFH+++ ++++ +S+++T       W     D
Sbjct: 163 LDLVILDELGYLPFSQTGGALLFHLLSKLYEH-TSVVITTNLSFSEWSAVFGD 214


>gi|125775059|ref|XP_001358781.1| GA18789 [Drosophila pseudoobscura pseudoobscura]
 gi|54638522|gb|EAL27924.1| GA18789 [Drosophila pseudoobscura pseudoobscura]
          Length = 439

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268


>gi|313806394|gb|EFS44901.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL087PA2]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|291458146|ref|ZP_06597536.1| ATPase, AAA family [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419229|gb|EFE92948.1| ATPase, AAA family [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 430

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 34/159 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-----SNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +I  GP G+GK+ LA + +  +++        S   K ++ I+   +K +          
Sbjct: 55  LIFYGPPGTGKTTLARLIARTTKAEFCQLNATSAGKKEMEEIVERAKKNL------GGYG 108

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  S +L+ A T    + V    L SR   + + +
Sbjct: 109 KRTILFVDEIHRFNKAQQDYLLPYVEDGSLILIGATTENPYFEVNSA-LLSR---SRIFE 164

Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYI 201
           +     + +  ++ +  +D  R      + I+++   ++
Sbjct: 165 LKPLTGEEIRILLKRAVSDQRRGLGSFRLRIEEEALDFL 203


>gi|282165489|ref|YP_003357874.1| cell division control protein 48 [Methanocella paludicola SANAE]
 gi|282157803|dbj|BAI62891.1| cell division control protein 48 [Methanocella paludicola SANAE]
          Length = 839

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   +++S +   S
Sbjct: 496 PPKGIVLYGPPGTGKTLLARAVANESEANFIS 527



 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++  +  FS
Sbjct: 225 PPKGVLLHGPPGTGKTLLAKAVANECGAEFFS 256


>gi|242093540|ref|XP_002437260.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor]
 gi|241915483|gb|EER88627.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor]
          Length = 398

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E        
Sbjct: 171 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 222

Query: 123 DTQLFHIINSIHQYD 137
                 + N   ++ 
Sbjct: 223 ------MFNYAREHQ 231


>gi|227530160|ref|ZP_03960209.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540]
 gi|227349913|gb|EEJ40204.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540]
          Length = 441

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 21/128 (16%)

Query: 48  AIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL 104
              + +R LI+         +IL GP G GK+ LA I + +++S    FS +  S+  I 
Sbjct: 36  GNGKVLRDLIEHDQ---VSSLILWGPPGVGKTTLAEIIAQQTKSHFITFSAVTSSIRDIR 92

Query: 105 -----------IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         R    +++I   +      F       +  S +L+ A T   S+ +
Sbjct: 93  KIMEEAEKNREFGERTICFIDEIHRFNKAQQDAFLPF---VERGSIILIGATTENPSFEI 149

Query: 154 CLPDLCSR 161
               L SR
Sbjct: 150 NSA-LLSR 156


>gi|238501396|ref|XP_002381932.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus
           flavus NRRL3357]
 gi|317142566|ref|XP_001818955.2| 26S protease regulatory subunit 6A [Aspergillus oryzae RIB40]
 gi|220692169|gb|EED48516.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus
           flavus NRRL3357]
          Length = 462

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 248 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 307

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 365

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++    ++      R++ +D  +
Sbjct: 366 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVDDSV 401


>gi|118594496|ref|ZP_01551843.1| Deoxynucleoside kinase [Methylophilales bacterium HTCC2181]
 gi|118440274|gb|EAV46901.1| Deoxynucleoside kinase [Methylophilales bacterium HTCC2181]
          Length = 215

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
              +++ GP GSGKS LA + +++  +  FS  A+    +      P   ED+       
Sbjct: 7   YPYIVVEGPIGSGKSTLARLLANQFNANMFSEKAERNPFL------PKFYEDMKHYALP- 59

Query: 124 TQLFHIINSIHQ 135
           TQLF +    +Q
Sbjct: 60  TQLFFLFQRANQ 71


>gi|46109186|ref|XP_381651.1| hypothetical protein FG01475.1 [Gibberella zeae PH-1]
          Length = 790

 Score = 42.1 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 40/194 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110
           V+LVGP G+GK+ LA   + ++    F       D I +                     
Sbjct: 343 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFTAAKNKSPAI 402

Query: 111 VLLEDIDLLDF-----NDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           V ++++D +       +         QL   ++   Q    +++ A   P      L   
Sbjct: 403 VFIDELDAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDSKIIIIGATNLPKMLDKAL--- 459

Query: 159 CSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RSLVFAEKL 215
            +R  +    V + LPD      ++      ++I +   +    I  R   +S    E  
Sbjct: 460 -TRPGRFDRHVNVDLPDVRGRIAILKHHA--KKIKVSPDVDLEAIAARCPGQSGAELE-- 514

Query: 216 VDKMDNLALSRGMG 229
            + ++  AL     
Sbjct: 515 -NMLNVAALRASRA 527


>gi|325115158|emb|CBZ50714.1| putative AAA family ATPase domain-containing protein [Neospora
           caninum Liverpool]
          Length = 786

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+R ++L GP GSGKS ++ I + ++ +  F 
Sbjct: 509 PARSLLLYGPPGSGKSLISRIIATEAGAMFFD 540


>gi|218197427|gb|EEC79854.1| hypothetical protein OsI_21333 [Oryza sativa Indica Group]
          Length = 770

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 29/108 (26%)

Query: 60  PSW----PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----- 110
           P W    P   ++L GP G GK+ LA+  ++++    +   A  + S +    +      
Sbjct: 217 PRWLGVKPVAGLLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRSL 276

Query: 111 -----------VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144
                      V +++ID +           N   + +  +   LMT 
Sbjct: 277 FKKAYRTAPSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 318


>gi|189501748|ref|YP_001957465.1| Holliday junction DNA helicase RuvB [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|238692303|sp|B3ER84|RUVB_AMOA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189497189|gb|ACE05736.1| hypothetical protein Aasi_0299 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 342

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA+I +++  +         LD           L   D+L  +
Sbjct: 55  PLDHVLLHGPPGLGKTTLAHIIANELGANIRITSGPVLDKPGDLAGLLTNLGPYDVLFID 114

Query: 123 DTQLFHIINSIHQY 136
           +    H +N I + 
Sbjct: 115 EI---HRLNPIVEE 125


>gi|170289856|ref|YP_001736672.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173936|gb|ACB06989.1| AAA family ATPase, CDC48 subfamily [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 732

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 42/206 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G+GK+ LA   +++S +   S                 + +  +    +
Sbjct: 213 PPKGVLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKYYGESEKRLREIFEEAEKN 272

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 273 APSIIFMDEIDAIAPKREEVTGEVERRVVAQLLALMDGLKGRGEVIVIGATNRPEAID-- 330

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L    +    ++I +PD +  ++++  +   R + +   +       ++R L     
Sbjct: 331 -PALRRPGRFDREIEIGVPDREGRKEIL--LIHTRNMPLADDV------DLDR-LADITH 380

Query: 215 LVDKMDNLALSR--GMGITRSLAAEV 238
                D  AL R   M   R L  EV
Sbjct: 381 GFVGADLAALVREAAMRALRRLMKEV 406



 Score = 36.3 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L GP G+GK+ LA   +++S +   S
Sbjct: 491 ILLFGPPGTGKTLLAKAVANESEANFIS 518


>gi|169832181|ref|YP_001718163.1| recombination factor protein RarA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169639025|gb|ACA60531.1| AAA ATPase, central domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 435

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 31/144 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +IL GP GSGK+ LA+I S   KS     S ++  +  +           D       
Sbjct: 59  GSIILYGPPGSGKTTLAHIISRTTKSNFRTVSAVSSGVKELRQVIEAAA---DSLKFHGR 115

Query: 123 DTQLF----HIINSIHQYDSSLLM-------------TARTFPVSWGVCLPDLCSRLKAA 165
            T LF    H  N   Q    +L+             T              L SR   +
Sbjct: 116 KTILFVDECHAFNKSQQD---VLLPGIEKGIVTFIGGTTENPYFEMRGA---LLSR---S 166

Query: 166 TVVKISLPDDDFLEKVIVKMFADR 189
            + ++     + LE ++ +  ADR
Sbjct: 167 RIFRLEELSTEDLESILRRALADR 190


>gi|156055944|ref|XP_001593896.1| hypothetical protein SS1G_05324 [Sclerotinia sclerotiorum 1980]
 gi|154703108|gb|EDO02847.1| hypothetical protein SS1G_05324 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 2921

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 65   RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
              ++L GP G+GK+ LA   + +S +T        ++ + +   +
Sbjct: 2652 PGLLLYGPPGTGKTLLAKAVAKESGATVLEISGAEVNDMYVGEGE 2696


>gi|126303142|ref|XP_001371530.1| PREDICTED: similar to spastin protein isoform 2 [Monodelphis
           domestica]
          Length = 587

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 345 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 394


>gi|21355121|ref|NP_652016.1| peroxin 1 [Drosophila melanogaster]
 gi|7294415|gb|AAF49760.1| peroxin 1 [Drosophila melanogaster]
 gi|18447347|gb|AAL68239.1| LD43687p [Drosophila melanogaster]
 gi|220947334|gb|ACL86210.1| l(3)70Da-PA [synthetic construct]
          Length = 1006

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92
             +E  V +++    WPSR               V+L GP G+GK+ L            
Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            S +A S +  +I  + P LL     +  ++  + ++ N        +L 
Sbjct: 771 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818


>gi|14590059|ref|NP_142123.1| replication factor C large subunit [Pyrococcus horikoshii OT3]
 gi|42559336|sp|O57853|RFCL_PYRHO RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|3256499|dbj|BAA29182.1| 468aa long hypothetical replication factor C subunit [Pyrococcus
           horikoshii OT3]
          Length = 468

 Score = 42.1 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 66/193 (34%), Gaps = 36/193 (18%)

Query: 48  AIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS---------- 94
           A+E+    I+SW          ++L GP GSGK+      + +                 
Sbjct: 24  ALEKVRAWIESWLHGNPPKKKALLLAGPPGSGKTTTVYALAHEYNFEVIELNASDERTYN 83

Query: 95  -----NIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTART 146
                  A     I+   RK + L++ D +      +         I +  + ++M A  
Sbjct: 84  KIARYVQAAYTMDIMGKRRKIIFLDEADNIEPSGAPEIA-----KLIDKARNPIIMAAN- 137

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
               W V   ++  R   A +V+    +   +   +V++     I + K++   I +   
Sbjct: 138 --HYWEV-PKEIRDR---AELVEYKRLNQRDVISALVRILKREGITVPKEILTEIAK--- 188

Query: 207 RSLVFAEKLVDKM 219
           RS       ++ +
Sbjct: 189 RSSGDLRAAINDL 201


>gi|309791814|ref|ZP_07686301.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris
           trichoides DG6]
 gi|308226136|gb|EFO79877.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris
           trichoides DG6]
          Length = 710

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 79/219 (36%), Gaps = 51/219 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTRKP 110
           V+L GP GSGK+ +A   ++++ +                   +N+    D         
Sbjct: 220 VLLYGPPGSGKTLIARAVANETSAHFVTINGPEIIDKLYGASEANLRGIFDEARKRAPAI 279

Query: 111 VLLEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
           + +++ID +                   QL  +++ +    + +++ A   P S     P
Sbjct: 280 IFIDEIDAIAPKREDLSGDRQVERRVVAQLLALMDGLESRGNVIVIAATNLPNSLD---P 336

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI-----------VQR 204
            L    +    + I++PD D   +++      R + +  ++   ++           +Q 
Sbjct: 337 ALRRPGRFDREISINVPDKDGRAEILE--IHTRGMPLAAEVNLDWLAGVTHGFVGADLQA 394

Query: 205 MERS--LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241
           + R   +    +L+  +D       +   + +A EVL +
Sbjct: 395 LCREAAMGALRRLLPDIDFS--QAQIPYDKLMALEVLPD 431



 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 17/83 (20%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGK 77
           F     ++ DD+     +E   RL+     WP R               V+L GP G+GK
Sbjct: 449 FTEIPDVTWDDV---GGLEDVRRLLIEAVEWPLRHARAFEHLGVRTPKGVLLYGPPGTGK 505

Query: 78  SCLANIWSDKSRSTRFSNIAKSL 100
           + LA   + +S +   S     L
Sbjct: 506 TLLAKALARESEANFISVKGPEL 528


>gi|304413825|ref|ZP_07395242.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Regiella insecticola LSR1]
 gi|304283545|gb|EFL91940.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Candidatus Regiella insecticola LSR1]
          Length = 423

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 20/105 (19%)

Query: 29  FFSFPRCLGISRDDLLVH-----SAIEQAV-----RLIDSWPSWP----SRVVILVGPSG 74
               P  +    DD ++       A+  AV     RL +   +         ++L+GP+G
Sbjct: 63  ALPTPHEIRHHLDDYVIGQEQAKKALAVAVYNHYKRLCNGDSNNGVELGKSNILLIGPTG 122

Query: 75  SGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           SGK+ LA   +      RF ++  ++      T    + ED++ +
Sbjct: 123 SGKTLLAETLA------RFLDVPFTMADATTLTEAGYVGEDVENI 161


>gi|302782429|ref|XP_002972988.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii]
 gi|300159589|gb|EFJ26209.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii]
          Length = 570

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
             + S +  A+        +P  V+ L+GP G+GK+ LA   + ++    F+  A     
Sbjct: 340 FQIVSCLRGALNFRSLGAKFPKGVL-LIGPPGTGKTLLARALAGEAGVPFFAASASEFVE 398

Query: 103 ILIDTRKPVLLE 114
           + +      + E
Sbjct: 399 MFVGRGAARIRE 410


>gi|300711801|ref|YP_003737615.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
 gi|299125484|gb|ADJ15823.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
          Length = 403

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  ++   +
Sbjct: 181 PPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLFEVARSH 240

Query: 123 DTQLF 127
           +  + 
Sbjct: 241 EPAVL 245


>gi|34496831|ref|NP_901046.1| recombination factor protein RarA [Chromobacterium violaceum ATCC
           12472]
 gi|34102686|gb|AAQ59051.1| probable ATPase associated with chromosome architecture
           [Chromobacterium violaceum ATCC 12472]
          Length = 443

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 28/180 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFND 123
           +IL GP G GK+ LA I +    +      A       I       +E    +       
Sbjct: 50  MILWGPPGVGKTTLARILAASFDAEFIPISAVFAGVKDIRE----AVEKAHAVLQRSGRR 105

Query: 124 TQLF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKI 170
           T LF    H  N   Q D+ L      L+T   A T   S+ V    L SR   A V  +
Sbjct: 106 TILFVDEVHRFNKSQQ-DAFLPFVESGLITFIGATTENPSFEVNSA-LLSR---AQVYVL 160

Query: 171 SLPDDDFLEKVIVKMF---ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +   +D L+++  +     A   +  D    + +    +        L+++    A +RG
Sbjct: 161 NSLSEDELKQLFARARTEGALDGLNFDDAAVSTLTGYADGDARRFLNLLEQTRTAAQARG 220


>gi|83312305|ref|YP_422569.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1]
 gi|82947146|dbj|BAE52010.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1]
          Length = 546

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 47/204 (23%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111
           +LVGP G+GK+ LA   + ++    F+        + +                     +
Sbjct: 192 LLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCII 251

Query: 112 LLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLP 156
            +++ID +            D  +  L  +   ++     +  +L+ A   P      L 
Sbjct: 252 FIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPAL- 310

Query: 157 DLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
                L+       V +  PD    EK+I      R++ +   + A I+ R       A 
Sbjct: 311 -----LRPGRFDRQVVVPNPDILGREKIIKVHM--RKVPLSPDVDARIIARGTPGFSGA- 362

Query: 214 KLVDKMDNLAL----SRGMGITRS 233
            L + ++  AL    +    +T +
Sbjct: 363 DLANLVNEAALLAARAGKRVVTMA 386


>gi|315104914|gb|EFT76890.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL050PA2]
          Length = 717

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|310658620|ref|YP_003936341.1| ATP-dependent DNA helicase, component of ruvABC resolvasome
           [Clostridium sticklandii DSM 519]
 gi|308825398|emb|CBH21436.1| ATP-dependent DNA helicase, component of RuvABC resolvasome
           [Clostridium sticklandii]
          Length = 333

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L++I + +           +++           L+D D+L  ++   
Sbjct: 59  VLLYGPPGLGKTTLSHIIASEMGVDIKVTSGPAIERAGDLAAILTNLKDKDILFIDEI-- 116

Query: 127 FHIINSIHQY 136
            H IN   + 
Sbjct: 117 -HRINRNVEE 125


>gi|307354036|ref|YP_003895087.1| AAA family ATPase [Methanoplanus petrolearius DSM 11571]
 gi|307157269|gb|ADN36649.1| AAA family ATPase, CDC48 subfamily [Methanoplanus petrolearius DSM
           11571]
          Length = 846

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 54/149 (36%), Gaps = 31/149 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G+GK+ +A   +++S +   S                 + +  D    +
Sbjct: 215 PPKGVLLYGPPGTGKTLIAKAVANESGAHFISIAGPEVISKYYGESEQRLREIFDEAEDN 274

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ + +    +++ A          
Sbjct: 275 APSIIFIDELDSIAPRREDVTGEVERRVVAQLLTMMDGLEERGQVVVIGAT---NRLDAI 331

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIV 183
            P L    +    ++I  PD+    +++ 
Sbjct: 332 DPALRRPGRFDREIEIGPPDESDRLEILR 360



 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R V+L GP G+GK+ +A   +++S +    
Sbjct: 525 PPRGVLLYGPPGTGKTLIAKAVANESGANFIP 556


>gi|288930996|ref|YP_003435056.1| 26S proteasome subunit P45 family [Ferroglobus placidus DSM 10642]
 gi|288893244|gb|ADC64781.1| 26S proteasome subunit P45 family [Ferroglobus placidus DSM 10642]
          Length = 400

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 16/79 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + ++ +T    +        I     ++          
Sbjct: 174 PPKGVLLYGPPGTGKTLLAKAVATETNATFIRVVGSEFVQKYIGEGARLVREVFQLAREK 233

Query: 113 ------LEDIDLLDFNDTQ 125
                 +++ID +    T 
Sbjct: 234 APSIIFIDEIDAIAARRTA 252


>gi|242398848|ref|YP_002994272.1| Proteasome-activating nucleotidase [Thermococcus sibiricus MM 739]
 gi|242265241|gb|ACS89923.1| Proteasome-activating nucleotidase [Thermococcus sibiricus MM 739]
          Length = 400

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G GK+ +A   + +  +T    I   L    I     ++ E
Sbjct: 174 PPRGVLLYGPPGCGKTLMAKALAHEVNATFIRVIGSELVRKYIGEGARLVSE 225


>gi|257784645|ref|YP_003179862.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469]
 gi|310943118|sp|C8W731|FTSH_ATOPD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|257473152|gb|ACV51271.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469]
          Length = 644

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 47/154 (30%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R  +LVGP G+GK+ +A   + ++    F         + +                   
Sbjct: 218 RGALLVGPPGTGKTLIAKAVAGEAGVPFFQIAGSEFVEMFVGRGAAKVRDLFKQANEKAP 277

Query: 111 --VLLEDIDLLDF---------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW--- 151
             + +++ID +           ++      QL   ++    +   +++ A   P +    
Sbjct: 278 CIIFIDEIDAVGKRRDASLNSNDEREQTLNQLLSEMDGFDNHKGIVVLAATNRPETLDKA 337

Query: 152 -----------GVCLPDLCSRLKAATVVKISLPD 174
                       V LPDL  R     V++I   D
Sbjct: 338 LLRPGRFDRRIPVELPDLKGR---EAVLQIHAND 368


>gi|170051679|ref|XP_001861875.1| 26S protease regulatory subunit 4 [Culex quinquefasciatus]
 gi|167872831|gb|EDS36214.1| 26S protease regulatory subunit 4 [Culex quinquefasciatus]
          Length = 438

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267


>gi|225464119|ref|XP_002264023.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147867423|emb|CAN83271.1| hypothetical protein VITISV_001131 [Vitis vinifera]
          Length = 434

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 46/141 (32%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P R  +L GP G+GKS LA   + ++ ST FS  +  L S                    
Sbjct: 163 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARES 222

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    H     L++ A   P S  
Sbjct: 223 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYSLD 282

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 283 QAIRRRFDKRIYIPLPDLKAR 303


>gi|126282307|ref|XP_001371702.1| PREDICTED: similar to P26s4 [Monodelphis domestica]
          Length = 461

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 239 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 290


>gi|109104429|ref|XP_001103312.1| PREDICTED: 26S protease regulatory subunit 4-like [Macaca mulatta]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|403456|gb|AAA35484.1| 26S protease (S4) regulatory subunit [Homo sapiens]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|15219503|ref|NP_175120.1| 26S proteasome regulatory complex subunit p42D, putative
           [Arabidopsis thaliana]
 gi|297846852|ref|XP_002891307.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp.
           lyrata]
 gi|75336159|sp|Q9MAK9|PS10B_ARATH RecName: Full=26S protease regulatory subunit S10B homolog B;
           AltName: Full=26S proteasome AAA-ATPase subunit RPT4b;
           AltName: Full=26S proteasome subunit S10B homolog B;
           AltName: Full=Regulatory particle triple-A ATPase
           subunit 4b
 gi|7767657|gb|AAF69154.1|AC007915_6 F27F5.8 [Arabidopsis thaliana]
 gi|17065266|gb|AAL32787.1| similar to 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis
           thaliana]
 gi|21387177|gb|AAM47992.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Arabidopsis
           thaliana]
 gi|297337149|gb|EFH67566.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp.
           lyrata]
 gi|332193951|gb|AEE32072.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 399

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E        
Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 223

Query: 123 DTQLFHIINSIHQYD 137
                 + N   ++ 
Sbjct: 224 ------MFNYAREHQ 232


>gi|6679501|ref|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus]
 gi|16923972|ref|NP_476464.1| 26S protease regulatory subunit 4 [Rattus norvegicus]
 gi|24430151|ref|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens]
 gi|113931412|ref|NP_001039154.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Xenopus
           (Silurana) tropicalis]
 gi|114654359|ref|XP_510114.2| PREDICTED: 26S protease regulatory subunit 4 isoform 3 [Pan
           troglodytes]
 gi|194038242|ref|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4 [Sus scrofa]
 gi|194225274|ref|XP_001494140.2| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 1
           [Equus caballus]
 gi|296215716|ref|XP_002754239.1| PREDICTED: 26S protease regulatory subunit 4 [Callithrix jacchus]
 gi|297298437|ref|XP_001086338.2| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Macaca
           mulatta]
 gi|297714911|ref|XP_002833857.1| PREDICTED: 26S protease regulatory subunit 4-like [Pongo abelii]
 gi|332223518|ref|XP_003260920.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Nomascus
           leucogenys]
 gi|49065780|sp|P62193|PRS4_RAT RecName: Full=26S protease regulatory subunit 4; Short=P26s4;
           AltName: Full=26S proteasome AAA-ATPase subunit RPT2;
           AltName: Full=Proteasome 26S subunit ATPase 1
 gi|49065817|sp|P62191|PRS4_HUMAN RecName: Full=26S protease regulatory subunit 4; Short=P26s4;
           AltName: Full=26S proteasome AAA-ATPase subunit RPT2;
           AltName: Full=Proteasome 26S subunit ATPase 1
 gi|49065818|sp|P62192|PRS4_MOUSE RecName: Full=26S protease regulatory subunit 4; Short=P26s4;
           AltName: Full=26S proteasome AAA-ATPase subunit RPT2;
           AltName: Full=Proteasome 26S subunit ATPase 1
 gi|1066067|gb|AAB34137.1| P26s4 [Mus musculus]
 gi|1395182|dbj|BAA09341.1| proteasomal ATPase (S4) [Rattus norvegicus]
 gi|12653481|gb|AAH00512.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Homo
           sapiens]
 gi|13277996|gb|AAH03860.1| Protease (prosome, macropain) 26S subunit, ATPase 1 [Mus musculus]
 gi|26353418|dbj|BAC40339.1| unnamed protein product [Mus musculus]
 gi|32879995|gb|AAP88828.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Homo
           sapiens]
 gi|38970033|gb|AAH63157.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Rattus
           norvegicus]
 gi|48146205|emb|CAG33325.1| PSMC1 [Homo sapiens]
 gi|49522871|gb|AAH73818.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Homo
           sapiens]
 gi|61359328|gb|AAX41701.1| proteasome 26S subunit 1 [synthetic construct]
 gi|61359333|gb|AAX41702.1| proteasome 26S subunit 1 [synthetic construct]
 gi|61359339|gb|AAX41703.1| proteasome 26S subunit 1 [synthetic construct]
 gi|74139332|dbj|BAE40812.1| unnamed protein product [Mus musculus]
 gi|74177859|dbj|BAE39016.1| unnamed protein product [Mus musculus]
 gi|74179883|dbj|BAE36506.1| unnamed protein product [Mus musculus]
 gi|74223651|dbj|BAE28695.1| unnamed protein product [Mus musculus]
 gi|74228913|dbj|BAE21929.1| unnamed protein product [Mus musculus]
 gi|89272512|emb|CAJ83548.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Xenopus
           (Silurana) tropicalis]
 gi|119601825|gb|EAW81419.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1, isoform
           CRA_a [Homo sapiens]
 gi|123981600|gb|ABM82629.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [synthetic
           construct]
 gi|123996411|gb|ABM85807.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [synthetic
           construct]
 gi|133778179|gb|AAI23488.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Bos taurus]
 gi|148686957|gb|EDL18904.1| mCG122657 [Mus musculus]
 gi|149025345|gb|EDL81712.1| peptidase (prosome, macropain) 26S subunit, ATPase 1 [Rattus
           norvegicus]
 gi|189055350|dbj|BAG36130.1| unnamed protein product [Homo sapiens]
 gi|197692323|dbj|BAG70125.1| proteasome 26S ATPase subunit 1 [Homo sapiens]
 gi|197692583|dbj|BAG70255.1| proteasome 26S ATPase subunit 1 [Homo sapiens]
 gi|208965388|dbj|BAG72708.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [synthetic
           construct]
 gi|296482890|gb|DAA25005.1| proteasome 26S ATPase subunit 1 [Bos taurus]
          Length = 440

 Score = 42.1 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|307701252|ref|ZP_07638274.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16]
 gi|307613646|gb|EFN92893.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16]
          Length = 765

 Score = 41.7 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 51/214 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEMFVGMGASRVRDLFEQARSAAPAI 282

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++   +  + +L+ A   P      L
Sbjct: 283 IFVDEIDAVGRHRGTGMGGGHDEREQTLNQLLVEMDGFDERTNVILIAATNRPDVLDPAL 342

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD    E ++     ++ +  D  L A + +R       A
Sbjct: 343 ------LRPGRFDRQVAVEAPDIKGREAILTVHAKNKPLSKDTDLKA-LAKRTP-GFTGA 394

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             L + ++  AL          A   L+E    D
Sbjct: 395 -DLANVLNEAALLA--------ARHTLEEINASD 419


>gi|303244707|ref|ZP_07331038.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
 gi|302484921|gb|EFL47854.1| AAA ATPase central domain protein [Methanothermococcus okinawensis
           IH1]
          Length = 372

 Score = 41.7 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 33/150 (22%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSIL 104
            W  + ++  GP G+GK+ LA   + ++    +   A  L                +  L
Sbjct: 152 EWAPKNILFYGPPGTGKTLLARALATETDVPLYLIKATELIGEHVGDGSKQIQDLYNKAL 211

Query: 105 IDTRKPVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
            D    + ++++D +  +                L   ++ IH  D  + + A   P   
Sbjct: 212 NDRPCIIFIDELDAIALSRQYQSLRGDVSEIVNALLTELDGIHNNDGIVTIAATNNPEML 271

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              +    SR +     ++   DD+ L+ +
Sbjct: 272 DNAV---RSRFEEEIKFELPN-DDERLKII 297


>gi|254496577|ref|ZP_05109445.1| recombination factor protein RarA [Legionella drancourtii LLAP12]
 gi|254354201|gb|EET12868.1| recombination factor protein RarA [Legionella drancourtii LLAP12]
          Length = 432

 Score = 41.7 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 58/169 (34%), Gaps = 24/169 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ +A+I +        +  A       I        E++       T L
Sbjct: 49  MILWGPPGVGKTTIAHITAAAFECEWIALSAVFSGVKDIRAAMERAQENL--AQGKHTIL 106

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 107 FIDEIHRFNKAQQD--ALLPYTESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKP 160

Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             ++ L+++  K        I  D    A ++   +         V+++
Sbjct: 161 LTNEELKQLFQKAHQAVLSHISFDDAAVAIVIDYADGDARRLLNCVEQL 209


>gi|227512582|ref|ZP_03942631.1| recombination ATPase [Lactobacillus buchneri ATCC 11577]
 gi|227084197|gb|EEI19509.1| recombination ATPase [Lactobacillus buchneri ATCC 11577]
          Length = 441

 Score = 41.7 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +I  GP GSGK+ LA I + K+++    FS +   +  I    +      + +     
Sbjct: 52  PSMIFWGPPGSGKTTLAEIIAKKTKAKFVTFSAVTSGIRDIRKLMKDA----EANRNMGG 107

Query: 123 DTQLF----HIINSIHQY 136
            T +F    H  N   Q 
Sbjct: 108 KTIVFVDEIHRFNKAQQD 125


>gi|209695310|ref|YP_002263239.1| recombination factor protein RarA [Aliivibrio salmonicida LFI1238]
 gi|208009262|emb|CAQ79528.1| conserevd hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 448

 Score = 41.7 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 69/200 (34%), Gaps = 40/200 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113
           +IL GP G+GK+ LA + ++ + +   R S +   +  I     K            + +
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIDKAKENQTTGRRTILFV 113

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI N      + +  T              L SR   A V K+ 
Sbjct: 114 DEVHRFNKSQQDAFLPHIENGTI---TFIGATTENPSFELNNA---LLSR---ARVYKLK 164

Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDK 218
             +   + ++I +   D  R +      +   +   +        RM  + +     + +
Sbjct: 165 SLEKQDIVQIIEQALTDKNRGLNDDNFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAE 224

Query: 219 MDNLALSRGMGITRSLAAEV 238
            ++        +   L AEV
Sbjct: 225 ENHE---GKKVVDLPLLAEV 241


>gi|170089231|ref|XP_001875838.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649098|gb|EDR13340.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 405

 Score = 41.7 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 61/183 (33%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   +  +++        SL  + I     ++          
Sbjct: 185 PPKGCLMYGPPGTGKTLLARACAASTKACYLKLAGPSLVQMFIGDGAKLVRDAFALAKEK 244

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      D   ++ A       
Sbjct: 245 APAIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFGSDDRIKVIAATNRIDIL 304

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  LP++    +++      R++ I   +    + R      
Sbjct: 305 DPAL--LRSGRLD--RKIEFPLPNETARARILQ--IHSRKMAISPDVNYEELARSTDEFN 358

Query: 211 FAE 213
            A+
Sbjct: 359 AAQ 361


>gi|158430364|pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
 gi|158430365|pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
           Adp
 gi|158430366|pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
           Adp
 gi|158430367|pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
           Adp
          Length = 355

 Score = 41.7 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 41/140 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 83  PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 142

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152
                 ++ +D L                T+L   +N + +     L++ A   P     
Sbjct: 143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 202

Query: 153 -----------VCLPDLCSR 161
                      + LPDL +R
Sbjct: 203 AIRRRFERRIYIPLPDLAAR 222


>gi|92113453|ref|YP_573381.1| recombination factor protein RarA [Chromohalobacter salexigens DSM
           3043]
 gi|91796543|gb|ABE58682.1| Recombination protein MgsA [Chromohalobacter salexigens DSM 3043]
          Length = 469

 Score = 41.7 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 36/186 (19%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------- 110
            S   R +IL GP G GK+ LA+I +D S +   R S +   +  I     +        
Sbjct: 69  ESGAVRSMILWGPPGVGKTTLADILADASGAMLERLSAVMAGVKDIRAAVERAREGQVRG 128

Query: 111 ----VLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
               + L++I  L+    D  L H+     +     L+ A T   S+ V    L SR   
Sbjct: 129 QPTLLFLDEIHRLNKSQQDALLPHV-----ESGLLTLIGATTENPSFEVNSA-LLSR--- 179

Query: 165 ATVVKISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLV-FAEKLV 216
           A V  +   + + L +V+ +  AD       R I  D+ +   +     RS    A + +
Sbjct: 180 ARVYVLRKLETEDLLRVLHQALADTERGLGKRHIEADEGVLETLA----RSASGDARRAL 235

Query: 217 DKMDNL 222
             ++  
Sbjct: 236 GLLETA 241


>gi|169775759|ref|XP_001822346.1| cell division control protein 48 [Aspergillus oryzae RIB40]
 gi|238502409|ref|XP_002382438.1| cell division control protein Cdc48 [Aspergillus flavus NRRL3357]
 gi|83771081|dbj|BAE61213.1| unnamed protein product [Aspergillus oryzae]
 gi|220691248|gb|EED47596.1| cell division control protein Cdc48 [Aspergillus flavus NRRL3357]
          Length = 821

 Score = 41.7 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374

Query: 155 L 155
           L
Sbjct: 375 L 375


>gi|296535676|ref|ZP_06897851.1| replication-associated recombination protein A [Roseomonas
           cervicalis ATCC 49957]
 gi|296264000|gb|EFH10450.1| replication-associated recombination protein A [Roseomonas
           cervicalis ATCC 49957]
          Length = 463

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 36/187 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ +A + ++ +   RF+ ++     +  D +K              T L
Sbjct: 71  LILWGPPGVGKTTIARLLAEAAG-LRFAALSAVFSGVA-DLKKAFDEARARRRAGQGTLL 128

Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q            +L+      P  +    +      L    V+ +  
Sbjct: 129 FVDEIHRFNRAQQDGFLPVVEDGTVTLVGATTENPSFALNGAI------LSRCQVMVLRR 182

Query: 173 PDDDFLEKVIVKMF-----------ADRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            DD  LE+++ +             A R +   +      Y++  M   L+   +    +
Sbjct: 183 LDDAALERLLARAEAEAGRALPVDEAARGVLRAMADGDGRYLLN-MAEQLLALPEGSAAL 241

Query: 220 DNLALSR 226
           D   LS 
Sbjct: 242 DPAGLSA 248


>gi|255641390|gb|ACU20972.1| unknown [Glycine max]
          Length = 426

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNGPDTL 320

Query: 148 ------PVSWG----VCLPDLCSR 161
                 P          LPDL SR
Sbjct: 321 DPALLRPGRLNRKVEFGLPDLESR 344


>gi|242008303|ref|XP_002424946.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
           corporis]
 gi|212508560|gb|EEB12208.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
           corporis]
          Length = 395

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 172 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 223

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 224 ------MFNYARDHQ 232


>gi|170690290|ref|ZP_02881457.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170690892|ref|ZP_02882058.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170691664|ref|ZP_02882829.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170692086|ref|ZP_02883250.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170694060|ref|ZP_02885216.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170694104|ref|ZP_02885259.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170695159|ref|ZP_02886307.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170696576|ref|ZP_02887698.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170138529|gb|EDT06735.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170140011|gb|EDT08191.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170140844|gb|EDT09017.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170141132|gb|EDT09304.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170143370|gb|EDT11534.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170143869|gb|EDT12032.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170144141|gb|EDT12303.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
 gi|170144725|gb|EDT12886.1| IstB domain protein ATP-binding protein [Burkholderia graminis
           C4D1M]
          Length = 258

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 34/148 (22%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVR------LIDSWPSWPSRVVILVGPSGSGKSCLANIW- 84
           FP    I   D     A E  VR       IDS     +  ++LVG  G+GK+ LA    
Sbjct: 65  FPAYRDIGGFDFSCSDANEALVRQLYECEFIDS-----AHNIVLVGGPGTGKTHLATAIG 119

Query: 85  -SDKSRSTRFSNIAKSLDSILIDTRKPVL---------LEDIDLLDFND----------- 123
                   R      +++ +    ++ ++         L   DL+  ++           
Sbjct: 120 VQALEHHRRRVRFFSTIELVNALEQEKLVGKPGQLATRLMYADLVVLDELGYLPFSQTGG 179

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSW 151
             LFH+++ +++  +S+++T       W
Sbjct: 180 ALLFHLLSKLYER-TSIIITTNLSFAEW 206


>gi|149195243|ref|ZP_01872332.1| Holliday junction DNA helicase B [Caminibacter mediatlanticus TB-2]
 gi|149134585|gb|EDM23072.1| Holliday junction DNA helicase B [Caminibacter mediatlanticus TB-2]
          Length = 330

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 76/204 (37%), Gaps = 35/204 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G GK+ LANI +++  +   +  A  L+           LE+ D+L  ++   
Sbjct: 54  MLFFGPPGLGKTTLANIIANEMNANIKTISAPMLEKSGDLAAILTNLEEGDILFIDEI-- 111

Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD-------------------LCS 160
            H + +  +        D  L +   + P +  + L D                   L  
Sbjct: 112 -HRLKAAIEEVLYSAMEDFRLDIVIGSGPAAQTIKL-DVAKFTLIGATTRAGMLSNPLRD 169

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADR-QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           R       +++  +++ L  +I+K+ + +    I    A  I +R   +   A +L+ ++
Sbjct: 170 RF--GMSFRLNFYNEEEL-ALIIKLASKKLNYEIKDDAAKEIAKRSRGTPRIALRLLKRI 226

Query: 220 -DNLALSRGMGITRSLAAEVLKET 242
            D   +     I   +A   L E 
Sbjct: 227 RDFAEVENKKIIDLKIAKYGLDEL 250


>gi|123478150|ref|XP_001322239.1| proteasome endopeptidase complex [Trichomonas vaginalis G3]
 gi|121905081|gb|EAY10016.1| proteasome endopeptidase complex, putative [Trichomonas vaginalis
           G3]
          Length = 423

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++++ S     I   L    I     ++ E
Sbjct: 198 PPKGVLLYGPPGTGKTLLARAVANRTESVFIRVIGSELVQKYIGEGARMVRE 249


>gi|169610313|ref|XP_001798575.1| hypothetical protein SNOG_08255 [Phaeosphaeria nodorum SN15]
 gi|111063411|gb|EAT84531.1| hypothetical protein SNOG_08255 [Phaeosphaeria nodorum SN15]
          Length = 461

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 248 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 307

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 365

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D+ +
Sbjct: 366 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMTVDEGV 401


>gi|21228802|ref|NP_634724.1| transposase [Methanosarcina mazei Go1]
 gi|20907320|gb|AAM32396.1| Transposase [Methanosarcina mazei Go1]
          Length = 265

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLA---NIWSDKSR-STRFSNIAKSLDSILIDTRKPVL---------- 112
           ++L+GP G GKS LA    I + K+  S  F+N    ++ + I  R+ +L          
Sbjct: 105 IVLLGPPGVGKSHLAIALGIEAVKAGISVHFTNTGNLIERLKIANREGILEKKIRDLMKF 164

Query: 113 ----LEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
               +++I  L F+D     LF +I+  ++  S++L T+      WG    D
Sbjct: 165 KVLIIDEIGYLPFDDEGAHCLFQLISRRYEKSSTIL-TSNKSYGEWGEIFKD 215


>gi|115465954|ref|NP_001056576.1| Os06g0109400 [Oryza sativa Japonica Group]
 gi|55296101|dbj|BAD67691.1| putative cell survival CED-4-interacting protein MAC-1 [Oryza
           sativa Japonica Group]
 gi|55296176|dbj|BAD67894.1| putative cell survival CED-4-interacting protein MAC-1 [Oryza
           sativa Japonica Group]
 gi|113594616|dbj|BAF18490.1| Os06g0109400 [Oryza sativa Japonica Group]
 gi|222634830|gb|EEE64962.1| hypothetical protein OsJ_19854 [Oryza sativa Japonica Group]
          Length = 770

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 29/108 (26%)

Query: 60  PSW----PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----- 110
           P W    P   ++L GP G GK+ LA+  ++++    +   A  + S +    +      
Sbjct: 217 PRWLGVKPVAGLLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRSL 276

Query: 111 -----------VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144
                      V +++ID +           N   + +  +   LMT 
Sbjct: 277 FKKAYRTAPSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 318


>gi|148548551|ref|YP_001268653.1| AFG1 family ATPase [Pseudomonas putida F1]
 gi|148512609|gb|ABQ79469.1| AFG1-family ATPase [Pseudomonas putida F1]
          Length = 357

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 23/110 (20%)

Query: 65  RVVILVGPSGSGKSCL----------------------ANIWSDKSRSTRFSNIAKSLDS 102
           R + L G  G GKS L                      A +     R     +   +   
Sbjct: 65  RSLYLYGSVGRGKSWLLDGFFQAVPIADKLRLHFHDFFARLHQGMHRHRALDDALGATLD 124

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151
            L+   + +  ++  + D  D  L   + N++      LL+T+   P   
Sbjct: 125 ELVGGCRVLCFDEFHVHDIGDAMLLTRLFNALFARGVYLLVTSNYAPEGL 174


>gi|317500629|ref|ZP_07958848.1| replicative DNA helicase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897947|gb|EFV19999.1| replicative DNA helicase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 284

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 28/131 (21%)

Query: 50  EQAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDKSR-----------STRFSNI 96
           E A   +++W +   R +  +L G  G+GKS  A   ++              +   +++
Sbjct: 110 EHAHFYVENWEAMKERNIGYLLWGGVGTGKSYFAGCIANALMEREIPVCMTNFALILNDL 169

Query: 97  AKSLDSI-----LIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFP 148
           A S +        + +   ++L+D  +    +  L  + N I   ++    L++T     
Sbjct: 170 AASFEGRNEYISRLCSFPLLILDDFGMERGTEYGLEQVYNVIDSRYRSGRPLIVTT---- 225

Query: 149 VSWGVCLPDLC 159
               + L DL 
Sbjct: 226 ---NLTLEDLQ 233


>gi|257388941|ref|YP_003178714.1| proteasome-activating nucleotidase [Halomicrobium mukohataei DSM
           12286]
 gi|257171248|gb|ACV49007.1| 26S proteasome subunit P45 family [Halomicrobium mukohataei DSM
           12286]
          Length = 404

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  +L    
Sbjct: 181 PPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGSKLVRDLFELARNE 240

Query: 123 DTQL 126
           +  +
Sbjct: 241 EPAV 244


>gi|14591092|ref|NP_143167.1| hypothetical protein PH1278 [Pyrococcus horikoshii OT3]
 gi|3257698|dbj|BAA30381.1| 363aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 363

 Score = 41.7 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 17/158 (10%)

Query: 50  EQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108
            QAV L I   P  P + ++L GP G+GKS LA+  ++   +T FS  A  L S      
Sbjct: 106 AQAVGLSIAKSPIDPPQGILLFGPPGTGKSLLASATANSLNATFFSVKASDLLSKYFGES 165

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG-VCLPDLCSRLKAATV 167
             ++           + LF +     Q   S++       ++     L D   R+    +
Sbjct: 166 SKLV-----------SALFSL---ARQLSPSVIFIDEVDSLTMKRSSLDDAARRMIGTLL 211

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
            +I    D    KVIV    +    +D+ + + +  R+
Sbjct: 212 AEIDGFKD-KRRKVIVLTATNTPWDLDEAMLSRLPIRI 248


>gi|298674960|ref|YP_003726710.1| AAA family ATPase [Methanohalobium evestigatum Z-7303]
 gi|298287948|gb|ADI73914.1| AAA family ATPase, CDC48 subfamily [Methanohalobium evestigatum
           Z-7303]
          Length = 733

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 39/167 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V++ GPSG+GK+ +A   + ++ +   S     +                +    D
Sbjct: 211 PPKGVMVYGPSGTGKTLIAKAVAYETDANFISLSGPEIMSKYYGESEEKLREIFEEAEND 270

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 271 APSIIFIDEIDSIAPKRGEVSGEVEQRIVAQLLSLMDGLKSRGEVIVIAATNRPSSVDEA 330

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           L       +       ++I +PD D   +++      R +  D  + 
Sbjct: 331 LR------RGGRFDREIEIEIPDRDARLEILKVHT--RGMPFDNDIV 369



 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P R VIL GP G+GK+ LA   S +S +   S                 I ++       
Sbjct: 483 PPRGVILYGPPGTGKTMLAKAVSGESEANFISIKGPELLSKYVGESERAIRETFRKAKQA 542

Query: 107 TRKPVLLEDIDLLD 120
               + +++ID + 
Sbjct: 543 APTVIFIDEIDSIA 556


>gi|291550085|emb|CBL26347.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ruminococcus torques L2-14]
          Length = 438

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 80/205 (39%), Gaps = 43/205 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +I  GP G+GK+ LA + +  + +            K ++ ++ + +      D+  +  
Sbjct: 55  LIFYGPPGTGKTTLAKVIAHTTSAEFKQINATVAGKKDMEEVVKEAK------DLQGMYG 108

Query: 122 NDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + +L+ A T    + V    L SR   +++ +
Sbjct: 109 KKTILFIDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SSIFE 164

Query: 170 ISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +   +   +++++++   D  + +      I+     ++    + S   A   ++ ++  
Sbjct: 165 LRPLEKTDIKELLLRAVNDTEKGLGSFHAVIEDDALEFLA---DVSGGDARNALNAIELG 221

Query: 223 ALSRGMG------ITRSLAAEVLKE 241
            L+          IT  +A+E +++
Sbjct: 222 VLTTDRSEDGQIHITLDVASECIQK 246


>gi|294875153|ref|XP_002767218.1| cell division cycle protein, putative [Perkinsus marinus ATCC
           50983]
 gi|239868730|gb|EEQ99935.1| cell division cycle protein, putative [Perkinsus marinus ATCC
           50983]
          Length = 295

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P R V+L GP G GK+ +A   ++++ +  F
Sbjct: 240 PPRGVLLYGPPGCGKTLIARAIANETGAFFF 270


>gi|194742744|ref|XP_001953861.1| GF17023 [Drosophila ananassae]
 gi|190626898|gb|EDV42422.1| GF17023 [Drosophila ananassae]
          Length = 446

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 224 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 275


>gi|167854588|ref|ZP_02477369.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755]
 gi|219872223|ref|YP_002476598.1| recombination factor protein RarA [Haemophilus parasuis SH0165]
 gi|167854343|gb|EDS25576.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755]
 gi|219692427|gb|ACL33650.1| recombination factor protein RarA [Haemophilus parasuis SH0165]
          Length = 447

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 71/205 (34%), Gaps = 39/205 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +++  +   R S +   +  I     K      ++      T
Sbjct: 52  MIFWGPPGTGKTTLAEIIANELDAEVERLSAVTSGIKEIREAIEKA----KLNRQSGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A +  +
Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---ARIYIL 161

Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRME---R-SLVFAEKLVDKM 219
                  + K++    AD  R      + I   +   +   +    R SL   E + D  
Sbjct: 162 KPLQAVDILKILQNAIADKERGLGNEKLIIQDDVLQLLADYVNGDGRFSLNCLELMCDM- 220

Query: 220 DNLALSRGMGITRSLAAEVLKETQQ 244
               L +G  + ++L  EVL E Q 
Sbjct: 221 -AEQLPQGKLLDKALLTEVLGERQA 244


>gi|145259126|ref|XP_001402275.1| cell division control protein 48 [Aspergillus niger CBS 513.88]
 gi|134074895|emb|CAK39004.1| unnamed protein product [Aspergillus niger]
          Length = 820

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374

Query: 155 L 155
           L
Sbjct: 375 L 375


>gi|118473106|ref|YP_890326.1| cell division protein [Mycobacterium smegmatis str. MC2 155]
 gi|118174393|gb|ABK75289.1| cell division protein [Mycobacterium smegmatis str. MC2 155]
          Length = 770

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 64/269 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K++ +QL    P+         D          D L + +  QA+         P  V+ 
Sbjct: 147 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 200

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112
           L GP G+GK+ LA   + ++    F+        + +                     + 
Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIF 260

Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +++ID +               +  L  +   ++        +L+ A   P      L  
Sbjct: 261 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPAL-- 318

Query: 158 LCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR-MERSLVFAE 213
               L+       + +S PD      V+      + I  D  L   + +R +  S     
Sbjct: 319 ----LRPGRFDRQIPVSNPDLAGRRAVLKVHSQGKPIAPDADL-DGLAKRTVGMSGADLA 373

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +   ++  AL         +    L+E 
Sbjct: 374 NV---INEAALLTARENGTVITGPALEEA 399


>gi|16741033|gb|AAH16368.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Homo
           sapiens]
          Length = 440

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|54308357|ref|YP_129377.1| recombination factor protein RarA [Photobacterium profundum SS9]
 gi|46912785|emb|CAG19575.1| putative ATPase protein [Photobacterium profundum SS9]
          Length = 446

 Score = 41.7 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 71/201 (35%), Gaps = 42/201 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + ++ + +   R S +   +  I I   K       + +    T
Sbjct: 52  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIDKA----RENKMAGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V K+
Sbjct: 108 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 161

Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIV------QRMERSLVFAEKLVD 217
              +   +  V+ +   D  R      +     +   +        RM  SL + E+LVD
Sbjct: 162 KSLETAEVLAVVEQALKDSSRGISDTNLEFVDDVKERLSELVCGDARM--SLNYLEQLVD 219

Query: 218 KMDNLALSRGMGITRSLAAEV 238
            M     +    IT  L AEV
Sbjct: 220 -MAEENKAGIKYITLELLAEV 239


>gi|323138990|ref|ZP_08074050.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322395744|gb|EFX98285.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 639

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 74/213 (34%), Gaps = 43/213 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS        + +                   
Sbjct: 190 RGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAP 249

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +            D  +  L  +   ++     +  +L+ A   P     
Sbjct: 250 CIIFVDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 309

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      ++       +++  PD    EK++      R++ +   +   +V R      
Sbjct: 310 AL------MRPGRFDRQIQVPNPDFIGREKILKVHA--RKVPLAPDVDLKVVARGTPGFS 361

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            A  L++ ++  AL       R +  +  ++ +
Sbjct: 362 GA-DLMNLVNEAALLAARRSKRIVTNQEFEDAR 393


>gi|331237454|ref|XP_003331384.1| hypothetical protein PGTG_12706 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309310374|gb|EFP86965.1| hypothetical protein PGTG_12706 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 818

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 56/203 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 244 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 303

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 304 APAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 363

Query: 152 -----------GVCLPDLCSRLKAATVVKISLP---DDDFLEKVIVKMFADRQIFIDKKL 197
                       + +PD   RL+    +        DD  L     K+ AD   ++   +
Sbjct: 364 LRRFGRFDREVDIGIPDATGRLE-ILRIHTKNMKLGDDVDL----EKIAADTHGYVGSDV 418

Query: 198 AAYIVQRMERSLVFAEKLVDKMD 220
           A+        S    +++ +KMD
Sbjct: 419 ASLC------SEAAMQQIREKMD 435



 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G+GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 517 PSKGVLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 573


>gi|297687914|ref|XP_002821444.1| PREDICTED: 26S protease regulatory subunit 4-like [Pongo abelii]
          Length = 424

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 202 PPKGVILCGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVWE 253


>gi|302661469|ref|XP_003022402.1| hypothetical protein TRV_03466 [Trichophyton verrucosum HKI 0517]
 gi|291186345|gb|EFE41784.1| hypothetical protein TRV_03466 [Trichophyton verrucosum HKI 0517]
          Length = 994

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 29  FFSFP--RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
              FP      + +D+     +        D+      +V++L GP G GK+ LA+I + 
Sbjct: 246 PIVFPGLAKPKLKKDNF----SN-------DAEERAHRKVLLLTGPPGLGKTTLAHICAK 294

Query: 87  KSRSTRFSNIAKSLDSILIDTRK 109
           +         A    S  + T +
Sbjct: 295 QVGYEVLEINASDERSRTVVTGR 317


>gi|302508986|ref|XP_003016453.1| hypothetical protein ARB_04742 [Arthroderma benhamiae CBS 112371]
 gi|291180023|gb|EFE35808.1| hypothetical protein ARB_04742 [Arthroderma benhamiae CBS 112371]
          Length = 964

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 29  FFSFP--RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
              FP      + +D+     +        D+      +V++L GP G GK+ LA+I + 
Sbjct: 246 PIVFPGLAKPKLKKDNF----SN-------DAEERAHRKVLLLTGPPGLGKTTLAHICAK 294

Query: 87  KSRSTRFSNIAKSLDSILIDTRK 109
           +         A    S  + T +
Sbjct: 295 QVGYEVLEINASDERSRTVVTGR 317


>gi|257052236|ref|YP_003130069.1| proteasome-activating nucleotidase [Halorhabdus utahensis DSM
           12940]
 gi|256690999|gb|ACV11336.1| 26S proteasome subunit P45 family [Halorhabdus utahensis DSM 12940]
          Length = 407

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  +L    
Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVRKFIGEGAKLVRDLFELAAER 243

Query: 123 DTQL 126
           +  +
Sbjct: 244 EPAI 247


>gi|261349970|ref|ZP_05975387.1| replication factor C large subunit [Methanobrevibacter smithii DSM
           2374]
 gi|288860753|gb|EFC93051.1| replication factor C large subunit [Methanobrevibacter smithii DSM
           2374]
          Length = 492

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 16/83 (19%)

Query: 55  LIDSWPSW-PSRVVILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSL 100
            +D+W +  P + ++LVGP G GK+ LA   +              +S+    S I +S 
Sbjct: 28  WVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIAREFSEYIELNASDKRSQDVIKSTIGESS 87

Query: 101 D--SILIDTRKPVLLEDIDLLDF 121
              S+  D  K ++L+++D +  
Sbjct: 88  SSKSLFGDDYKLLILDEVDGIHG 110


>gi|148908185|gb|ABR17208.1| unknown [Picea sitchensis]
          Length = 336

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 117 PQKGVLLYGPPGTGKTLLAKAIAKESGAVFIN 148


>gi|242761705|ref|XP_002340232.1| cell division control protein Cdc48 [Talaromyces stipitatus ATCC
           10500]
 gi|218723428|gb|EED22845.1| cell division control protein Cdc48 [Talaromyces stipitatus ATCC
           10500]
          Length = 822

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 374

Query: 155 L 155
           L
Sbjct: 375 L 375


>gi|148643237|ref|YP_001273750.1| replication factor C large subunit [Methanobrevibacter smithii ATCC
           35061]
 gi|158513781|sp|A5UMF4|RFCL_METS3 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|148552254|gb|ABQ87382.1| replication factor C, large subunit, RfcL [Methanobrevibacter
           smithii ATCC 35061]
          Length = 492

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 16/83 (19%)

Query: 55  LIDSWPSW-PSRVVILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSL 100
            +D+W +  P + ++LVGP G GK+ LA   +              +S+    S I +S 
Sbjct: 28  WVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIAREFSEYIELNASDKRSQDVIKSTIGESS 87

Query: 101 D--SILIDTRKPVLLEDIDLLDF 121
              S+  D  K ++L+++D +  
Sbjct: 88  SSKSLFGDDYKLLILDEVDGIHG 110


>gi|28211816|ref|NP_782760.1| Holliday junction DNA helicase RuvB [Clostridium tetani E88]
 gi|44888476|sp|Q891Z8|RUVB_CLOTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28204258|gb|AAO36697.1| holliday junction DNA helicase ruvB [Clostridium tetani E88]
          Length = 345

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + + +         +++           L + D+L  ++   
Sbjct: 59  VLLYGPPGLGKTTLANIIAKEMKGNLKITSGPAIERAGDLAAILTTLNEHDVLFIDEI-- 116

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 117 -HRLNRAVEE 125


>gi|219669601|ref|YP_002460036.1| recombination factor protein RarA [Desulfitobacterium hafniense
           DCB-2]
 gi|219539861|gb|ACL21600.1| AAA ATPase central domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 437

 Score = 41.7 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 75/201 (37%), Gaps = 36/201 (17%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + ++   S   R + +A  +  I    +     E + L     T
Sbjct: 53  LILYGPPGTGKTSLAQVIANTTSSGFVRINAVAAGVKEIREIIQTAT--EQLHLYGKK-T 109

Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  +   + A T    + +    L SR   +T+ ++  
Sbjct: 110 LVFCDEVHRFNKGQQDALLPAVENGTITFIGATTENPFFELNSA-LLSR---STLFRLQP 165

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              + +   + +  AD  R +      ID +   + +           + ++ ++   L+
Sbjct: 166 LTAEDIRSGLAQALADKERGLGNYSVSIDPEAWEHWLNFAN---GDLRRALNALELAVLT 222

Query: 226 RG-----MGITRSLAAEVLKE 241
                    IT S+A E +++
Sbjct: 223 TPPEQGVRRITLSVAEESIQQ 243


>gi|326920936|ref|XP_003206722.1| PREDICTED: 26S protease regulatory subunit 4-like, partial
           [Meleagris gallopavo]
          Length = 429

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 207 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 258


>gi|325971760|ref|YP_004247951.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
 gi|324026998|gb|ADY13757.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy]
          Length = 655

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 70/209 (33%), Gaps = 51/209 (24%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + +S  + F         + +                   
Sbjct: 228 RGVLLVGPPGTGKTLLAKAVAGESGVSFFHTSGSDFVEMFVGMGAARVRDLFEQARKHAP 287

Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQY---------------DSSLLMTARTFPVSWGV 153
             + ++++D +           N   +                   ++M A   P     
Sbjct: 288 CILFIDELDAVGRTRGGGLGGGNDEREQTLNQILVEMDGFSTTAGVIVMAATNRPDVLDP 347

Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----- 207
            L  L   R     VV +  PD    E+++      R+I ++K +    ++R+ R     
Sbjct: 348 AL--LRPGRFDRQVVVDL--PDIQEREEILKIHC--RKIKLEKDVD---LKRLARGSAGT 398

Query: 208 SLVFAEKLVDKMDNLAL--SRGMGITRSL 234
           S      LV   +  AL  +R    T ++
Sbjct: 399 SGADLANLV---NEAALFAARKNKSTVNM 424


>gi|321455705|gb|EFX66831.1| hypothetical protein DAPPUDRAFT_229316 [Daphnia pulex]
          Length = 464

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +  F+  A SL S  +   + ++
Sbjct: 222 PARGLLLFGPPGNGKTLLARAVASESSAKFFNISASSLTSKYVGEGEKLV 271


>gi|296284469|ref|ZP_06862467.1| recombination factor protein RarA [Citromicrobium bathyomarinum
           JL354]
          Length = 440

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ +A + +D     R++ ++     +    +     E         T L
Sbjct: 63  MILWGPPGTGKTTIARLLADSVG-MRYAAVSAVFSGVADLKKAFAEAETA-AKAGQKTLL 120

Query: 127 F----HIINSIHQYD 137
           F    H  N   Q  
Sbjct: 121 FVDEIHRFNRAQQDG 135


>gi|257485416|ref|ZP_05639457.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 228

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 27/160 (16%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +   +  A       I     V  +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVAKQQA 99

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKK 196
             A V  +   D+  L K++ +   +      RQ+ +  +
Sbjct: 155 --ARVYVLKSLDEAALRKLVHRALTEERGLGKRQLTLSDE 192


>gi|224047636|ref|XP_002192150.1| PREDICTED: spastin isoform 1 [Taeniopygia guttata]
          Length = 612

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 370 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 419


>gi|255568008|ref|XP_002524981.1| Vacuolar sorting protein 4b, putative [Ricinus communis]
 gi|223535725|gb|EEF37388.1| Vacuolar sorting protein 4b, putative [Ricinus communis]
          Length = 428

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 31/124 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R  +L GP G+GKS LA   + ++ ST FS  +  L                      
Sbjct: 166 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFRLARDS 225

Query: 107 TRKPVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLM----TARTFPVSWGVCLPD 157
               + +++ID L       N+++      +  +  + LL+      R F     + LPD
Sbjct: 226 APSIIFIDEIDSLCGQRGEGNESE------ASRRIKTELLVQMQAIRRRFDKRIYIPLPD 279

Query: 158 LCSR 161
           L +R
Sbjct: 280 LKAR 283


>gi|134094254|ref|YP_001099329.1| recombination factor protein RarA [Herminiimonas arsenicoxydans]
 gi|133738157|emb|CAL61202.1| ATPase, AAA family protein [Herminiimonas arsenicoxydans]
          Length = 430

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 23/178 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA--------------KSLDSILIDTRKPVL 112
           +IL GP G GK+ LA + +D   +   +  A                L    +D R  + 
Sbjct: 43  MILWGPPGVGKTTLARLMADSFNADFIALSAVLSGVKDIRDAVERAQLSRGAMDRRTILF 102

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR   A V  +  
Sbjct: 103 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKS 155

Query: 173 PDDDFLEKVIVKMFADR--QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
            D++ L  ++ +  A+    I       A ++   +         ++ +   A +   
Sbjct: 156 LDENDLAAMLDRACANELGDISFTPDAKATLIASADGDGRKLLNNLEIVARAAQANQR 213


>gi|1066065|gb|AAB34134.1| P26s4 [Drosophila melanogaster]
          Length = 439

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268


>gi|47222682|emb|CAG00116.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 440

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|317009066|gb|ADU79646.1| recombination factor protein RarA [Helicobacter pylori India7]
          Length = 391

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 69/184 (37%), Gaps = 21/184 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +   +     F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARMLERPFLLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + + +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKNHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I+     Y++     S   A  L++ +D L+      IT   
Sbjct: 151 KSDLDKLCAKALTLLKKQIESDAKTYLLNN---SAGDARALLNLLD-LSAKIEDPITLKT 206

Query: 235 AAEV 238
              +
Sbjct: 207 LKSL 210


>gi|331232967|ref|XP_003329145.1| 26S proteasome regulatory subunit 6A-B [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309308135|gb|EFP84726.1| 26S proteasome regulatory subunit 6A-B [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 460

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V++ GP G+GK+ LA   + ++++        SL  + I     ++ +  +L 
Sbjct: 240 PPKGVLMYGPPGTGKTLLARACAAQTKACYMKLAGPSLVQMFIGDGAKLVRDAFELA 296


>gi|260177252|gb|ACX33971.1| IstB ATP binding domain-containing protein [uncultured bacterium
           RM44]
          Length = 274

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 27/146 (18%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILVGPSGSGKSCLA---NIW 84
           FP    +   D      ++   RLID   +       R V+ +GP G GK+ LA    + 
Sbjct: 69  FPYKKRLEDFDFAAQPGLD--RRLIDELATGRFLAEGRNVVFLGPPGVGKTHLAISLGVI 126

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFNDTQ---L 126
           + +     +   A  +   L    +                ++++++  L  + TQ   L
Sbjct: 127 TAQLGHRTYFTTAIDMARKLTQAMEQNRLHRMLNALTQPKLLIIDEVGYLTLDQTQASLL 186

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWG 152
           F ++   ++ + ++++T+      WG
Sbjct: 187 FQVLCKRYEREQAVILTSNKAFSDWG 212


>gi|301122253|ref|XP_002908853.1| 26S protease regulatory subunit S10B [Phytophthora infestans T30-4]
 gi|262099615|gb|EEY57667.1| 26S protease regulatory subunit S10B [Phytophthora infestans T30-4]
          Length = 394

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +T    +A ++    I     V+ E
Sbjct: 171 PPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIRE 222


>gi|255934450|ref|XP_002558404.1| Pc12g16060 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583023|emb|CAP81233.1| Pc12g16060 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 433

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 163 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 213 -KQLF---NMARENKPAIIF 228


>gi|198418062|ref|XP_002127866.1| PREDICTED: similar to AGAP003215-PA [Ciona intestinalis]
          Length = 443

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 221 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 272


>gi|169334953|ref|ZP_02862146.1| hypothetical protein ANASTE_01359 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257691|gb|EDS71657.1| hypothetical protein ANASTE_01359 [Anaerofustis stercorihominis DSM
           17244]
          Length = 604

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 201 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCI 260

Query: 111 VLLEDIDL---------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID          +  ND       QL   ++        +++ A   P S     
Sbjct: 261 VFIDEIDTIGKKRGNANIGGNDEREQTLNQLLTEMDGFDSSKGVIILAASNRPDSLDPAL 320

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 321 LRPGRFDRRIPVELPDLKGR 340


>gi|146185105|ref|XP_001030952.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila]
 gi|146142708|gb|EAR83289.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena
           thermophila SB210]
          Length = 741

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 16/76 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++  + +       D + +                     
Sbjct: 343 ILLVGPPGTGKTLLARALAGEAGCSFYYKSGSEFDEMFVGVGASRVRELFKKARQTAPSI 402

Query: 111 VLLEDIDLLDFNDTQL 126
           + +++ID +    + L
Sbjct: 403 IFIDEIDSVCGKRSAL 418


>gi|115378704|ref|ZP_01465852.1| ATPase [Stigmatella aurantiaca DW4/3-1]
 gi|115364290|gb|EAU63377.1| ATPase [Stigmatella aurantiaca DW4/3-1]
          Length = 408

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 35  CLGISRDDLLVH-SAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
              +SR+DLL+  S +     L+D        SR + L GP G+GK+ LA   S      
Sbjct: 104 NPVVSREDLLMGLSHLTVTEELLDKLGPAVNSSRSLFLYGPPGNGKTSLAEAISRMFGGE 163

Query: 92  RFSNIAKSLDSILI 105
            F      +D+ +I
Sbjct: 164 AFVPYCLEIDNQII 177


>gi|115384726|ref|XP_001208910.1| vacuolar protein sorting-associated protein VPS4 [Aspergillus
           terreus NIH2624]
 gi|114196602|gb|EAU38302.1| vacuolar protein sorting-associated protein VPS4 [Aspergillus
           terreus NIH2624]
          Length = 434

 Score = 41.7 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIIF 229


>gi|291229298|ref|XP_002734612.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase
           1-like, partial [Saccoglossus kowalevskii]
          Length = 227

 Score = 41.7 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 49  PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 100


>gi|195430960|ref|XP_002063516.1| GK21952 [Drosophila willistoni]
 gi|194159601|gb|EDW74502.1| GK21952 [Drosophila willistoni]
          Length = 801

 Score = 41.7 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       + +PD   RL+   V++I   +    E V + ++ A+    +   LA+
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
                   S    +++ +KMD
Sbjct: 411 LC------SEAALQQIREKMD 425



 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|121717057|ref|XP_001275994.1| cell division control protein Cdc48 [Aspergillus clavatus NRRL 1]
 gi|119404151|gb|EAW14568.1| cell division control protein Cdc48 [Aspergillus clavatus NRRL 1]
          Length = 819

 Score = 41.7 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374

Query: 155 L 155
           L
Sbjct: 375 L 375



 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 41/175 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PSR V+  GP G+GK+ LA   +++  +                   SNI    D     
Sbjct: 529 PSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAA 588

Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
               V L+++D +  +                 QL   ++ +    +  ++ A   P   
Sbjct: 589 APCVVFLDELDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 648

Query: 152 GVCL--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQ 203
              L  P    RL   T+V + LPD    E ++      R+  +   +   +I  
Sbjct: 649 DAALVRP---GRLD--TLVYVPLPDQASRESIL--RAQLRKTPVAPDVDIPFIAS 696


>gi|89895174|ref|YP_518661.1| recombination factor protein RarA [Desulfitobacterium hafniense
           Y51]
 gi|89334622|dbj|BAE84217.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 440

 Score = 41.7 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 75/201 (37%), Gaps = 36/201 (17%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + ++   S   R + +A  +  I    +     E + L     T
Sbjct: 56  LILYGPPGTGKTSLAQVIANTTSSGFVRINAVAAGVKEIREIIQTAT--EQLHLYGKK-T 112

Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  N           +  +   + A T    + +    L SR   +T+ ++  
Sbjct: 113 LVFCDEVHRFNKGQQDALLPAVENGTITFIGATTENPFFELNSA-LLSR---STLFRLQP 168

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              + +   + +  AD  R +      ID +   + +           + ++ ++   L+
Sbjct: 169 LTAEDIRSGLAQALADKERGLGNYSVSIDPEAWEHWLNFAN---GDLRRALNALELAVLT 225

Query: 226 RG-----MGITRSLAAEVLKE 241
                    IT S+A E +++
Sbjct: 226 TPPEQGVRRITLSVAEESIQQ 246


>gi|162606548|ref|XP_001713304.1| 26S protease regulatory SU 6A [Guillardia theta]
 gi|12580770|emb|CAC27088.1| 26S protease regulatory SU 6A [Guillardia theta]
          Length = 397

 Score = 41.7 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G GK+ LA   + ++ +  F     +L  + I     ++ E
Sbjct: 181 VLLYGPPGMGKTLLARACASQTNAKFFKIGGPNLVQMYIGEGASLVRE 228


>gi|87119779|ref|ZP_01075676.1| PhoH family protein [Marinomonas sp. MED121]
 gi|86165255|gb|EAQ66523.1| PhoH family protein [Marinomonas sp. MED121]
          Length = 463

 Score = 41.7 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 28  LFFSFPRCLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
                 R   + +    ++        A  L+       S ++I+ GP+GSGK+ LA  +
Sbjct: 236 YLLDLNRASLMHQSFWGINPRNLEQAMAFYLLRHE---NSDLMIMTGPAGSGKTLLALAY 292

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
                + + S   K    I++    P + EDI  L   + +
Sbjct: 293 -----ALQVSMEEKRFSKIIVARSTPPMAEDIGFLPGTEEE 328


>gi|332653921|ref|ZP_08419665.1| putative phage replication protein [Ruminococcaceae bacterium D16]
 gi|332517007|gb|EGJ46612.1| putative phage replication protein [Ruminococcaceae bacterium D16]
          Length = 314

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           + + GP G+GK+ LA   ++   +     I  ++  +L   ++            +++ +
Sbjct: 168 LFIAGPPGTGKTHLAAAIANHLIAQGKPVICMTMIDLLERIKRT-----YSATGGSESDV 222

Query: 127 FHIINSIHQYDSSLLM---TARTFPVSWGVC 154
             +  ++      LL+     +  P  W + 
Sbjct: 223 LKLYKTV-----PLLVIDDIGKEPPTEWAIS 248


>gi|326915457|ref|XP_003204034.1| PREDICTED: spastin-like [Meleagris gallopavo]
          Length = 598

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 356 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 405


>gi|303236721|ref|ZP_07323300.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN]
 gi|302482889|gb|EFL45905.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN]
          Length = 692

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 55/167 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 232 ALLVGPPGTGKTLLAKAVAGEAGAPFFSMSGSDFVEMFVGVGASRVRDAFRQAKEKAPSI 291

Query: 111 VLLEDIDLLDF-----------NDTQ--------------------LFHIINSIHQYDSS 139
           + +++ID +             ++ +                    +    N +   D +
Sbjct: 292 IFIDEIDAVGRARSKNPSMGGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKA 351

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISL------PDDDFLEK 180
           LL   R       V LPDL  R KA   V +         D D L +
Sbjct: 352 LLRAGRFD-RQIHVDLPDLPER-KAIFQVHLRPLKLDNNLDIDLLAR 396


>gi|262039464|ref|ZP_06012768.1| holliday junction DNA helicase RuvB [Leptotrichia goodfellowii
           F0264]
 gi|261746531|gb|EEY34066.1| holliday junction DNA helicase RuvB [Leptotrichia goodfellowii
           F0264]
          Length = 353

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 30/189 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + + +            L+           LE+ D+L  ++   
Sbjct: 56  ILLYGPPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEI-- 113

Query: 127 FHIINS--------IHQYDSSLLMTARTFPVS-WGVCLPD----------------LCSR 161
            H +N+          +     ++  +        + LP                 L  R
Sbjct: 114 -HRLNTSVEEILYPAMEDGELDILIGKGPSARSIRIELPKFTLIGATTKAGQLSTPLRDR 172

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                 ++    ++  L+++I +     Q+  D+     I +R   +   A +L  +  +
Sbjct: 173 FGVTHRMEYYKLEE--LKEIIRRGANIFQVSYDEDGITEIAKRSRGTPRIANRLFKRARD 230

Query: 222 LALSRGMGI 230
            AL  G GI
Sbjct: 231 FALVEGKGI 239


>gi|151941136|gb|EDN59514.1| ribosome export [Saccharomyces cerevisiae YJM789]
          Length = 837

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P  V+ L GP G GK+ LA   +++SR+   S
Sbjct: 567 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 597


>gi|119601826|gb|EAW81420.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1, isoform
           CRA_b [Homo sapiens]
          Length = 397

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 175 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 226


>gi|16518974|gb|AAL25088.1|AF426837_1 Tobacco mosaic virus helicase domain-binding protein [Nicotiana
           tabacum]
          Length = 537

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 298 PARGLLLFGPPGTGKTMLAKAVASESEATFFNVSASSLTSKWVGEGEKLV 347


>gi|85717334|ref|ZP_01048287.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695873|gb|EAQ33778.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 287

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 98  QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206


>gi|103487637|ref|YP_617198.1| recombination factor protein RarA [Sphingopyxis alaskensis RB2256]
 gi|98977714|gb|ABF53865.1| Recombination protein MgsA [Sphingopyxis alaskensis RB2256]
          Length = 439

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 24/169 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ +A + ++  +  RF+ ++     +    +     E +       T L
Sbjct: 61  IILWGPPGTGKTTIARLLAEAVK-MRFAALSAVFSGVADLRQAFADAEKM-AATGKRTLL 118

Query: 127 F----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q          ++++   T      +       L SR   A V+ ++ 
Sbjct: 119 FVDEIHRFNRAQQDGFLPYVERGTVVLVGATTENPSFALNAA---LLSR---AQVLVLNR 172

Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             D  LE +I +  A+  R + +  +  A +V   +    F    V+ +
Sbjct: 173 LGDAALETLIDRAEAETGRALPVTTEARAALVASADGDGRFLLNQVETL 221


>gi|325982300|ref|YP_004294702.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325531819|gb|ADZ26540.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
          Length = 767

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLA--------NIWSDKSRSTRFSNIAKSLD-----------SILIDT 107
           ++LVG +G+GK+ LA           + K R     ++A SL+           ++ +  
Sbjct: 600 LVLVGGTGTGKTHLAIAIGTSGIQHHNKKVRFFSAIDLANSLEQEKSTGKQGRLALRLLQ 659

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
              V+L+++  L F+      LFH+++ +++  +S+++T       W 
Sbjct: 660 IDLVILDELGYLPFSQAGGALLFHLLSRLYER-TSVIITTNLAFAEWS 706


>gi|321265163|ref|XP_003197298.1| 26S protease regulatory subunit 6A [Cryptococcus gattii WM276]
 gi|317463777|gb|ADV25511.1| 26S protease regulatory subunit 6A, putative [Cryptococcus gattii
           WM276]
          Length = 468

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P +  ++ GP G+GK+ LA   + ++ +        +L  + +     ++ +  +L 
Sbjct: 249 PPKGCLMYGPPGTGKTLLARACAAQTNACYLKLAGPALVQMYLGDGAKLVRDAFELA 305


>gi|264677024|ref|YP_003276930.1| transporter ATM1 precursor [Comamonas testosteroni CNB-2]
 gi|262207536|gb|ACY31634.1| transporter ATM1 precursor [Comamonas testosteroni CNB-2]
          Length = 446

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 30/197 (15%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112
           IL GP G GK+ +A + +D   +   S                 A++  S L+  R  V 
Sbjct: 55  ILWGPPGVGKTTIARLMADAFDAQFISISAVLGGVKDIREAVEQAQAAQSGLLQQRTIVF 114

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   +      F       +      + A T   S+ V    L SR  A  V++   
Sbjct: 115 VDEVHRFNKGQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR-AAVYVLQSLT 169

Query: 173 PDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-- 229
           PDD  L++++ K  A + I  I+ +    ++   +     A +L++ ++ L+++      
Sbjct: 170 PDD--LKQIVAKAQAIQAIPAIEDEALERLIAYAD---GDARRLLNTLETLSITAEQAGV 224

Query: 230 --ITRSLAAEVLKETQQ 244
             IT +   +VL E  +
Sbjct: 225 QSITDAWLLKVLGERMR 241


>gi|260944346|ref|XP_002616471.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850120|gb|EEQ39584.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 427

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 40/148 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +    + A ++    I                 
Sbjct: 204 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYAKEH 263

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N          + ++ A   P + 
Sbjct: 264 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLGQTKVIMATNRPDTL 323

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDD 176
              L      L+A  +   ++I LP++ 
Sbjct: 324 DPAL------LRAGRLDRKIEIGLPNEA 345


>gi|194400003|gb|ACF60960.1| neuronal spastin [Gallus gallus]
          Length = 613

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 420


>gi|241589554|ref|YP_002979579.1| IstB domain protein ATP-binding protein [Ralstonia pickettii 12D]
 gi|241662646|ref|YP_002981006.1| IstB domain-containing protein ATP-binding protein [Ralstonia
           pickettii 12D]
 gi|240864673|gb|ACS62334.1| IstB domain protein ATP-binding protein [Ralstonia pickettii 12D]
 gi|240868266|gb|ACS65925.1| IstB domain protein ATP-binding protein [Ralstonia pickettii 12D]
          Length = 261

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 24/144 (16%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA-----NIWS 85
           FP    ++  D     A E  VR +        +  ++LVG  G+GK+ L          
Sbjct: 65  FPAYRDLTGFDFSCSEANEALVRQLHRCEFLESAHNIVLVGGPGTGKTHLGTAIGVQAVE 124

Query: 86  DKSRSTRFSNIAKSLDSILIDT--------------RKPVLLEDIDLLDFNDTQ---LFH 128
              R  RF +  + ++++ ++                  V+L+++  L F+ T    LFH
Sbjct: 125 HHHRRVRFFSTVELVNALELEKVSGKPGHLATRLMYADLVILDELGYLPFSQTGGALLFH 184

Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152
           +I+ +++  +SL++T       W 
Sbjct: 185 LISKLYER-TSLVITTNLSFGEWS 207


>gi|50307971|ref|XP_453984.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643119|emb|CAG99071.1| KLLA0E00837p [Kluyveromyces lactis]
          Length = 814

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 14/70 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA   +++SR+   S     L +                +  ++  +
Sbjct: 551 VLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKY--------------VGESERAI 596

Query: 127 FHIINSIHQY 136
             + N     
Sbjct: 597 RQVFNRARAS 606


>gi|83645244|ref|YP_433679.1| recombination factor protein RarA [Hahella chejuensis KCTC 2396]
 gi|83633287|gb|ABC29254.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Hahella chejuensis KCTC 2396]
          Length = 448

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 29/196 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113
           VI  GP G GK+ LA + +  + +     S +   +  I   +++            V +
Sbjct: 57  VIFWGPPGVGKTSLARLVAGYTGAEFITLSAVQSGVKEIREVSQRARANSQSGRKTIVFV 116

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +  + + + A T   S+ +    L SR   A V  +   
Sbjct: 117 DEVHRFNKSQQDAFLPY---VEEGAFVFIGATTENPSFELNNA-LLSR---ARVYPLKPL 169

Query: 174 DDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL-- 224
             D L  ++ +  +D            D  L   I +        A  +++ M +LA   
Sbjct: 170 TIDDLTALLQRALSDAENGLGQTSWSYDADLLRMIAEAANGDARQALNILETMSDLADPG 229

Query: 225 SRGMGITRSLAAEVLK 240
            +G  ++R L A V++
Sbjct: 230 EQGGILSRELLASVMQ 245


>gi|87125173|ref|ZP_01081020.1| putative transposase [Synechococcus sp. RS9917]
 gi|86167493|gb|EAQ68753.1| putative transposase [Synechococcus sp. RS9917]
          Length = 173

 Score = 41.7 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 22/111 (19%)

Query: 67  VILVGPSGSGKSCL--------------ANIWSDKSRSTRFSNIAKSLDSILI----DTR 108
           ++L GPSG GK+ L                 +   +          + D   I    D  
Sbjct: 20  LLLFGPSGVGKTHLAIAITMAMAAQDQACRFFPATALVQLLQKAKAAYDLPAILQKLDRY 79

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             ++++DI  +  ++ +   LF +I        SLL+T+      W    P
Sbjct: 80  SLLVIDDISYVRRSELETSVLFELICH-RYERRSLLVTSNQPFREWDDIFP 129


>gi|331697349|ref|YP_004333588.1| AAA ATPase central domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952038|gb|AEA25735.1| AAA ATPase central domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 456

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL---LDFND 123
           V+L GP G+GK+ LA + +     +R      +L + + + R   ++ED       D   
Sbjct: 67  VLLYGPPGTGKTTLARLMARSGGGSRHFVALSALSAGVKELRA--VIEDARRRLDRDGRS 124

Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  +           +    LL+ A T   S+ V  P L SR   + ++++ 
Sbjct: 125 TVLFIDEVHRFSKTQQDALLGAVEDRLVLLVAATTENPSFSVVSP-LLSR---SLILQLR 180

Query: 172 LPDDDFLEKVIVKMFAD-RQIFIDKKLAA---YIVQRMERSLVFAEKLVDKMDNLA 223
             + D L  ++ +   D R +    +LA      + R+  +   A + +  ++  A
Sbjct: 181 SLEPDELRALLRRAVVDGRGLGGSVELADDGEDALVRL--AAGDARRALTALEAAA 234


>gi|291406631|ref|XP_002719731.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase 1-like
           [Oryctolagus cuniculus]
          Length = 511

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 289 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 340


>gi|291238456|ref|XP_002739147.1| PREDICTED: TER94-like [Saccoglossus kowalevskii]
          Length = 1200

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           P R ++L GP G GK+ LA   +++ R+   S     L ++ 
Sbjct: 916 PCRGMLLYGPPGCGKTLLAKAVANECRANFLSVGGPELMAMP 957


>gi|317128226|ref|YP_004094508.1| ATPase AAA [Bacillus cellulosilyticus DSM 2522]
 gi|315473174|gb|ADU29777.1| AAA ATPase central domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 442

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 37/183 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA + ++ + +   + + +   +  +     +       + L ++  
Sbjct: 53  MIFHGPPGTGKTTLAKVIANSTSAHFEQLNAVIAGIKDVREVVSRA-----KERLKYDQE 107

Query: 125 Q--LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDL-CSRLKAATVVK 169
           +  LF    H  N           +  + +L+ A T    + V    L  SRL      +
Sbjct: 108 KTVLFIDEIHRFNKGQQDALLPFVEDGTVILIGATTENPMFEVNPALLSRSRL-----FR 162

Query: 170 ISLPDDDFLEKVIVKMF--ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    +D +++VI       DR      I I  +   ++V         A   ++ ++  
Sbjct: 163 LQSLTNDDIKQVIHAAINDKDRGFGEYDITIASEALDHLVNVAN---GDARTALNALELA 219

Query: 223 ALS 225
            L+
Sbjct: 220 ILT 222


>gi|256271958|gb|EEU06977.1| Rix7p [Saccharomyces cerevisiae JAY291]
          Length = 837

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P  V+ L GP G GK+ LA   +++SR+   S
Sbjct: 567 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 597


>gi|195028018|ref|XP_001986879.1| GH20288 [Drosophila grimshawi]
 gi|193902879|gb|EDW01746.1| GH20288 [Drosophila grimshawi]
          Length = 802

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 235 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 295 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 354

Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       + +PD   RL+   V++I   +    E V + ++ A+    +   LA+
Sbjct: 355 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 411

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
                   S    +++ +KMD
Sbjct: 412 LC------SEAALQQIREKMD 426



 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 564


>gi|163797539|ref|ZP_02191489.1| putative insertion sequence ATP-binding protein, IS21 family [alpha
           proteobacterium BAL199]
 gi|159177138|gb|EDP61698.1| putative insertion sequence ATP-binding protein, IS21 family [alpha
           proteobacterium BAL199]
          Length = 281

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 42/173 (24%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILV--GPSGSGKSCLA---NI 83
            F F     + R           A+  ++    + +R  +L   GP G+GKS LA    +
Sbjct: 75  SFDFSFQPSLDR-------HRIMALAQLE----FINRAEVLHFLGPPGTGKSHLATALGV 123

Query: 84  WSDKSR--------STRFSNIAKSLDSILID------TRKPVLLED----IDLLDFNDTQ 125
            + K+         +     +A+S     +        R  +L+ D    + +       
Sbjct: 124 AAVKAGRSVYRCTLAELIDALAQSEREGRLSEKIRFYARASLLIVDEIGYMPITSGGANL 183

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------LCSRLK-AATVVKIS 171
            F ++N+ ++  + +L T+      WG    D      L  RL   A VV+I 
Sbjct: 184 FFQLVNARYEKGAMIL-TSNRGFAEWGEVFGDPVVATALLDRLLHHAVVVQIE 235


>gi|154278255|ref|XP_001539944.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces
           capsulatus NAm1]
 gi|150413529|gb|EDN08912.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces
           capsulatus NAm1]
          Length = 353

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 95  PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 144

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 145 -KQLF---NMARESRPAIIF 160


>gi|67970603|dbj|BAE01644.1| unnamed protein product [Macaca fascicularis]
          Length = 440

 Score = 41.7 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|330805727|ref|XP_003290830.1| cell division cycle protein 48 [Dictyostelium purpureum]
 gi|325079040|gb|EGC32661.1| cell division cycle protein 48 [Dictyostelium purpureum]
          Length = 792

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 235 PPKGILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P S    
Sbjct: 295 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 354

Query: 155 L 155
           L
Sbjct: 355 L 355



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 508 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKA 564


>gi|323342363|ref|ZP_08082595.1| ATP-dependent metalloprotease FtsH [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463475|gb|EFY08669.1| ATP-dependent metalloprotease FtsH [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 631

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 70/213 (32%), Gaps = 45/213 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++    ++        + +                     
Sbjct: 198 MLLVGPPGTGKTLLAKAAAGEADVPFYAISGSDFVEMFVGVGASRVRDMFKKAKATAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++ I +    L++ A          L
Sbjct: 258 IFIDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGIEENSGVLVLAATNRDDVLDPAL 317

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAE 213
             L   R      V +  PD     +++     +++I  D  +  +I +R    S    E
Sbjct: 318 --LRPGRFDRTITVGL--PDVKGRTEILQVHARNKKIA-DDVVLKHIARRTPGFSGADLE 372

Query: 214 KLVDKMDNLAL----SRGMGITRSLAAEVLKET 242
            +   ++  A+         IT  +  E +   
Sbjct: 373 NV---LNEAAILSVRENKTEITTDIIDEAIDRV 402


>gi|312375083|gb|EFR22519.1| hypothetical protein AND_15087 [Anopheles darlingi]
          Length = 790

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D +L+    
Sbjct: 385 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGA 427


>gi|262371848|ref|ZP_06065127.1| predicted protein [Acinetobacter junii SH205]
 gi|262311873|gb|EEY92958.1| predicted protein [Acinetobacter junii SH205]
          Length = 786

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 34/161 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++L GP G+GK+ +A + + +S  +        L +  I                     
Sbjct: 575 ILLYGPPGTGKTQIARVLASQSGLSFIGATTSDLKANYIGQSGSKVKQLFEQARSQAPCI 634

Query: 111 VLLEDIDLLDFNDTQ-------------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + +++ID++                   L  +     +     L+ A  +P +       
Sbjct: 635 LFIDEIDIVAGARNGSNDSFIQEIVGQMLQELDGIATKEGQVFLLAASNYPENIDSA--- 691

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           L SRL+    ++I LP++    ++I  +   +    D +  
Sbjct: 692 LMSRLE--RKIEIGLPNEFARSQIIANILRKKPTNFDVETI 730


>gi|255074337|ref|XP_002500843.1| predicted protein [Micromonas sp. RCC299]
 gi|226516106|gb|ACO62101.1| predicted protein [Micromonas sp. RCC299]
          Length = 818

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           P R V+L GP G GK+ LA+  + ++    FS  A  + + +    + 
Sbjct: 204 PPRGVLLHGPPGCGKTTLAHAIAREAGVPFFSIAAPEIVAGVSGESEA 251



 Score = 35.5 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 35/160 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ +A   ++++ +                 S  A            P +
Sbjct: 514 VLLYGPPGCGKTLVAKATANEANANFISIKGPELLNKYVGESERAVRTLFARARAASPCV 573

Query: 113 L--EDIDLLD---FND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           L  +++D L     N+          QL   ++ +    S+ ++ A   P      +  L
Sbjct: 574 LFFDELDSLAPRRGNEGNQASERVVNQLLTEMDGLEARSSTFVVAATNRPDMIDSAM--L 631

Query: 159 C-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              RL     V +  PD       I+K    R+  +   +
Sbjct: 632 RPGRLDKLLYVPLPPPDG---RAAILKTLT-RKTPLAADV 667


>gi|261338170|ref|ZP_05966054.1| ATP-dependent metalloprotease FtsH [Bifidobacterium gallicum DSM
           20093]
 gi|270276807|gb|EFA22661.1| ATP-dependent metalloprotease FtsH [Bifidobacterium gallicum DSM
           20093]
          Length = 691

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 247 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDVFDEAKKNAP 306

Query: 125 QL 126
            +
Sbjct: 307 AI 308


>gi|222152145|ref|YP_002561305.1| cell-division protein [Macrococcus caseolyticus JCSC5402]
 gi|222121274|dbj|BAH18609.1| cell-division protein [Macrococcus caseolyticus JCSC5402]
          Length = 690

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 265 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 324

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       +++  PD    E V+      R   +D+ +    + QR       
Sbjct: 325 ------LRPGRFDRQIQVGAPDVKGREAVLKVHA--RNKPLDETVDLKALSQRTP-GFSG 375

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 376 A-DLENLLNEAALVAAR 391


>gi|194400005|gb|ACF60961.1| neuronal spastin [Gallus gallus]
          Length = 489

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 247 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 296


>gi|195036578|ref|XP_001989747.1| GH18966 [Drosophila grimshawi]
 gi|193893943|gb|EDV92809.1| GH18966 [Drosophila grimshawi]
          Length = 398

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE-------- 226

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 227 ------MFNYARDHQ 235


>gi|190406014|gb|EDV09281.1| ribosome biogenesis ATPase RIX7 [Saccharomyces cerevisiae RM11-1a]
 gi|259147956|emb|CAY81205.1| Rix7p [Saccharomyces cerevisiae EC1118]
 gi|323303931|gb|EGA57711.1| Rix7p [Saccharomyces cerevisiae FostersB]
          Length = 837

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P  V+ L GP G GK+ LA   +++SR+   S
Sbjct: 567 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 597


>gi|170033703|ref|XP_001844716.1| cell division protease ftsH [Culex quinquefasciatus]
 gi|167874684|gb|EDS38067.1| cell division protease ftsH [Culex quinquefasciatus]
          Length = 757

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D +L+    
Sbjct: 351 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGA 393


>gi|71895307|ref|NP_001026232.1| spastin [Gallus gallus]
 gi|82233831|sp|Q5ZK92|SPAST_CHICK RecName: Full=Spastin
 gi|53131842|emb|CAG31851.1| hypothetical protein RCJMB04_12e12 [Gallus gallus]
          Length = 613

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 420


>gi|6322994|ref|NP_013066.1| Rix7p [Saccharomyces cerevisiae S288c]
 gi|2492526|sp|Q07844|RIX7_YEAST RecName: Full=Ribosome biogenesis ATPase RIX7
 gi|1360222|emb|CAA97483.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285813391|tpg|DAA09287.1| TPA: Rix7p [Saccharomyces cerevisiae S288c]
          Length = 837

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P  V+ L GP G GK+ LA   +++SR+   S
Sbjct: 567 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 597


>gi|84499813|ref|ZP_00998101.1| ATPase, AAA family protein [Oceanicola batsensis HTCC2597]
 gi|84392957|gb|EAQ05168.1| ATPase, AAA family protein [Oceanicola batsensis HTCC2597]
          Length = 435

 Score = 41.7 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 26/188 (13%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            S     ++  GP G GK+ +A + +D++        A       +       ++     
Sbjct: 48  ASGSLSSLVFWGPPGVGKTTIARLLADETDLEFIQISAIFSGVADLKKVFEAAIQR--RR 105

Query: 120 DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAA 165
               T LF    H  N   Q          ++L+   T              L SR   A
Sbjct: 106 AGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LLSR---A 159

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            V+ +     + LE+++ +  A+    + +     A + +  +        LV+++   A
Sbjct: 160 QVLVLERLGPEDLERLLQRAEAEIGQELELTDAARATLREMADGDGRALLNLVEQV--AA 217

Query: 224 LSRGMGIT 231
                 +T
Sbjct: 218 WRVKAPLT 225


>gi|330686091|gb|EGG97713.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU121]
          Length = 685

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  +L     
Sbjct: 371 GA-DLENLLNEASLIAARE 388


>gi|328792507|ref|XP_623784.2| PREDICTED: 26S protease regulatory subunit 10B [Apis mellifera]
          Length = 368

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 222 ------MFNYARDHQ 230


>gi|319399668|gb|EFV87922.1| putative ATP-dependent metallopeptidase HflB [Staphylococcus
           epidermidis FRI909]
          Length = 700

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  +L     
Sbjct: 371 GA-DLENLLNEASLIAARE 388


>gi|314937282|ref|ZP_07844624.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654578|gb|EFS18328.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp.
           hominis C80]
          Length = 710

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  +L     
Sbjct: 371 GA-DLENLLNEASLIAARE 388


>gi|289551690|ref|YP_003472594.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01]
 gi|315660321|ref|ZP_07913174.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis
           M23590]
 gi|289181221|gb|ADC88466.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01]
 gi|315494610|gb|EFU82952.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis
           M23590]
          Length = 695

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  +L     
Sbjct: 371 GA-DLENLLNEASLIAARE 388


>gi|239637497|ref|ZP_04678471.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603]
 gi|239596942|gb|EEQ79465.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603]
          Length = 685

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  +L     
Sbjct: 371 GA-DLENLLNEASLIAARE 388


>gi|228476204|ref|ZP_04060907.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119]
 gi|228269689|gb|EEK11188.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119]
          Length = 710

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  +L     
Sbjct: 371 GA-DLENLLNEASLIAARE 388


>gi|224047638|ref|XP_002192184.1| PREDICTED: spastin isoform 2 [Taeniopygia guttata]
          Length = 580

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 338 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 387


>gi|158298980|ref|XP_319111.4| AGAP009973-PA [Anopheles gambiae str. PEST]
 gi|157014148|gb|EAA13918.4| AGAP009973-PA [Anopheles gambiae str. PEST]
          Length = 570

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D +L+    
Sbjct: 165 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGA 207


>gi|149412391|ref|XP_001509194.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 572

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 330 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 379


>gi|219848796|ref|YP_002463229.1| AAA ATPase [Chloroflexus aggregans DSM 9485]
 gi|219543055|gb|ACL24793.1| AAA ATPase [Chloroflexus aggregans DSM 9485]
          Length = 354

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR----FSNIAKSLDSIL 104
           +  A   ++       R ++L GPSGSG+S L    +  + +       +     L  + 
Sbjct: 24  LGAACEQLER-----RRPLLLYGPSGSGRSSLLTHLAQAAGAVLEIPNLNAFYLDLALLP 78

Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
             T    L+  +  L  ++  +  +   +      +L+
Sbjct: 79  DATTTYSLI--VRALGGSEPTITALERRLAANGRPVLI 114


>gi|78043136|ref|YP_360914.1| ABC transporter ATP-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995251|gb|ABB14150.1| ABC transporter, ATP-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 229

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 18/64 (28%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDTQ 125
           I+ GPSGSGKS L +I                L S+       VL++D+DL     ++  
Sbjct: 37  IIAGPSGSGKSTLLSI----------------LGSLNEPDSGRVLVDDLDLFSLSHDERA 80

Query: 126 LFHI 129
           LF +
Sbjct: 81  LFRL 84


>gi|27469190|ref|NP_765827.1| cell-division protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866073|ref|YP_187746.1| cell division protein FtsH [Staphylococcus epidermidis RP62A]
 gi|242241596|ref|ZP_04796041.1| cell division protein FtsH [Staphylococcus epidermidis W23144]
 gi|251809818|ref|ZP_04824291.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875442|ref|ZP_06284314.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           SK135]
 gi|293366153|ref|ZP_06612840.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316739|gb|AAO05914.1|AE016751_209 cell-division protein [Staphylococcus epidermidis ATCC 12228]
 gi|57636731|gb|AAW53519.1| cell division protein FtsH, putative [Staphylococcus epidermidis
           RP62A]
 gi|242234977|gb|EES37288.1| cell division protein FtsH [Staphylococcus epidermidis W23144]
 gi|251806686|gb|EES59343.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295799|gb|EFA88321.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           SK135]
 gi|291319747|gb|EFE60106.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329723965|gb|EGG60490.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU144]
 gi|329733033|gb|EGG69372.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU028]
 gi|329737911|gb|EGG74139.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis
           VCU045]
          Length = 700

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  +L     
Sbjct: 371 GA-DLENLLNEASLIAARE 388


>gi|58260308|ref|XP_567564.1| MMS2 [Cryptococcus neoformans var. neoformans JEC21]
 gi|134116242|ref|XP_773075.1| hypothetical protein CNBJ0700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255696|gb|EAL18428.1| hypothetical protein CNBJ0700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229614|gb|AAW46047.1| MMS2, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 810

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 239 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 298

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ +    + ++M A   P S    
Sbjct: 299 SPSIIFIDELDSIAPKREKANGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    V I +PD     +++      + + +   +
Sbjct: 359 LR----RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLSDDV 396



 Score = 37.8 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G+GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 512 PSKGVLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 568


>gi|297849202|ref|XP_002892482.1| 26S proteasome aaa-ATPase subunit rpt5B [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338324|gb|EFH68741.1| 26S proteasome aaa-ATPase subunit rpt5B [Arabidopsis lyrata subsp.
           lyrata]
          Length = 406

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 11/70 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF-----------SNIAKSLDSILIDTRKPV 111
           P + V+L GP G+GK+ +A   + ++ +T                    D+ L+   K  
Sbjct: 194 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLMFIGDGAKLVRDAFLLAKEKSP 253

Query: 112 LLEDIDLLDF 121
            +  ID +D 
Sbjct: 254 CIIFIDEIDA 263


>gi|257890950|ref|ZP_05670603.1| recombination factor protein RarA [Enterococcus faecium 1,231,410]
 gi|257827310|gb|EEV53936.1| recombination factor protein RarA [Enterococcus faecium 1,231,410]
          Length = 342

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 32/178 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225
             ++  +     D  R +      +D+      +  + R+        ++ ++   LS
Sbjct: 153 QDIQLAVEHALRDKERGLGQQAIQLDEDA----LLHLSRATNGDLRSALNGLELATLS 206


>gi|239791471|dbj|BAH72196.1| ACYPI010231 [Acyrthosiphon pisum]
          Length = 173

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 65  PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 116

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 117 ------MFNYARDHQ 125


>gi|224542103|ref|ZP_03682642.1| hypothetical protein CATMIT_01278 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525036|gb|EEF94141.1| hypothetical protein CATMIT_01278 [Catenibacterium mitsuokai DSM
           15897]
          Length = 423

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 58/150 (38%), Gaps = 19/150 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +           + +     + + +    +     V+++++ 
Sbjct: 43  IILYGPPGCGKTTIAKALAHDLNIPYRIFNASTGNKKEMDQIITEAKLSEGLFVIVDEVH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            L+       H++  I      L++   T    +    P + SR     V  ++  +++ 
Sbjct: 103 RLNKAKQD--HLLPYIES--GLLIIAGCTTANPYHSINPAIRSRCHLCEVKPLN--NEEI 156

Query: 178 LEKVIVKMFADRQI----FIDKKLAAYIVQ 203
           ++       ++R +     ID+ +  YI +
Sbjct: 157 VKACKRAAVSERGLNHQYEIDEDVYDYIAR 186


>gi|222478623|ref|YP_002564860.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451525|gb|ACM55790.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC
           49239]
          Length = 405

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  ++   N
Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 241

Query: 123 DTQLF 127
              + 
Sbjct: 242 QPAVL 246


>gi|153854634|ref|ZP_01995884.1| hypothetical protein DORLON_01879 [Dorea longicatena DSM 13814]
 gi|149752738|gb|EDM62669.1| hypothetical protein DORLON_01879 [Dorea longicatena DSM 13814]
          Length = 439

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 76/200 (38%), Gaps = 33/200 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           VI  GP G+GK+ LA + ++ + +      A +     ++       E +  +    T L
Sbjct: 55  VIFYGPPGTGKTTLAKVIANTTSAEFTQINATTAGKKDMEEVINKAKE-MQGMYRKKTIL 113

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   +++ ++    
Sbjct: 114 FVDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SSIFELQPLA 169

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            + ++ +I +   D        Q  ID+    ++    + S   A   ++ ++   L+  
Sbjct: 170 KEDIKTLITRAVYDTVKGMGSYQAVIDEDALEFLA---DISGGDARSALNAVELGILTTE 226

Query: 228 M------GITRSLAAEVLKE 241
                   IT  +A+E +++
Sbjct: 227 RSADGKIRITLDVASECIQK 246


>gi|119482299|ref|XP_001261178.1| cell division control protein Cdc48 [Neosartorya fischeri NRRL 181]
 gi|119409332|gb|EAW19281.1| cell division control protein Cdc48 [Neosartorya fischeri NRRL 181]
          Length = 819

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374

Query: 155 L 155
           L
Sbjct: 375 L 375


>gi|116251573|ref|YP_767411.1| recombination factor protein RarA [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256221|emb|CAK07302.1| putative ATPase AAA family protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 438

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 69/188 (36%), Gaps = 31/188 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111
           R+I+   S     +I  GP G+GK+ +A + S ++     + S I   +  +        
Sbjct: 47  RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFETA- 102

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
               +  +D   T LF    H  N           +  + +L+  T              
Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215
           L SR   A V+     D++ LE+++ +  A  Q  + + +   A +++  +        L
Sbjct: 157 LLSR---ARVLTFKSHDEESLEELLKRAEAIEQKSLPLTEDARASLIRMADGDGRAVLTL 213

Query: 216 VDKMDNLA 223
            +++   A
Sbjct: 214 AEEVWRAA 221


>gi|88801469|ref|ZP_01116997.1| AAA ATPase, CDC48 [Polaribacter irgensii 23-P]
 gi|88782127|gb|EAR13304.1| AAA ATPase, CDC48 [Polaribacter irgensii 23-P]
          Length = 717

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 15/72 (20%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDS--WP-----------SWPSRVVILVGPSGSGKSCLAN 82
             +  DD  V    E    L ++  WP           + P + +IL GP G+GK+ LA 
Sbjct: 452 PDVKWDD--VGGLNEIKEALKEAIEWPLKYAELFRKADTNPPKGIILYGPPGTGKTYLAK 509

Query: 83  IWSDKSRSTRFS 94
             + +S     S
Sbjct: 510 AVASESGVNFIS 521



 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 64/204 (31%), Gaps = 52/204 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + V L GP G+GK+ +    + ++ +                   + L  +  D +  
Sbjct: 215 PPKGVFLYGPPGTGKTLIVRAVASETDAYFLHISGPEIMGKFYGESEERLRKVFADAQAH 274

Query: 111 ----VLLEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID +                   QL  +++ +      +++ A   P    
Sbjct: 275 APAIIFIDEIDAIAPKREDLGGEKQVEKRVVAQLLSLMDGLESRGKVIVIGATNIP---N 331

Query: 153 VCLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              P L    R      V I  PD     +++      R + +   +          SL 
Sbjct: 332 TIDPALRRPGRFDRELSVSI--PDKKGRLEILE--IHTRGMPLAIDV----------SLE 377

Query: 211 FAEKLVDKM---DNLALSRGMGIT 231
              ++       D  AL+R   +T
Sbjct: 378 KLAEITHGFVGADLEALAREAAMT 401


>gi|83941468|ref|ZP_00953930.1| ATPase, AAA family protein [Sulfitobacter sp. EE-36]
 gi|83847288|gb|EAP85163.1| ATPase, AAA family protein [Sulfitobacter sp. EE-36]
          Length = 435

 Score = 41.7 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 72/204 (35%), Gaps = 27/204 (13%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G GK+ +A + +D++     + S I   +  +            I 
Sbjct: 49  QSGSLGSLIFWGPPGVGKTTIARLLADETDLHFVQISAIFSGVPELRKVFDAA----KIR 104

Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163
             +   T LF    H  N   Q          ++L+   T           +    SR +
Sbjct: 105 RQNGRGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAV---LSRSQ 161

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + ++ L D + L +   K    R + +D      +++  +        L++++   A
Sbjct: 162 VLVLERLPLADLERLAQRAEKELG-RGLPLDGPARENLLEMADGDGRALLNLIEQV--AA 218

Query: 224 LSRGMGIT-RSLAAEVLKETQQCD 246
                 +  ++L+A +++   Q D
Sbjct: 219 WKVEGKLDGKALSARLMRRAAQYD 242


>gi|325287034|ref|YP_004262824.1| AAA ATPase central domain-containing protein [Cellulophaga lytica
           DSM 7489]
 gi|324322488|gb|ADY29953.1| AAA ATPase central domain protein [Cellulophaga lytica DSM 7489]
          Length = 425

 Score = 41.7 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 26/142 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +IL GP G+GK+ LANI +++                        AK    +      
Sbjct: 40  PSLILWGPPGTGKTTLANIIANEIDRPFYTLSAISSGVKDVREVIEKAKKSGGLFTTKNP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L     +  +     L+ A T   S+ V +P L SR     V 
Sbjct: 100 ILFIDEIHRFSKSQQDSLL----AAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151

Query: 169 KISLPDDDFLEKVIVKMFADRQ 190
            +   D   L  ++ +  A RQ
Sbjct: 152 ILKPFDKHDLVTLLER--AIRQ 171


>gi|253741751|gb|EES98614.1| P60 katanin [Giardia intestinalis ATCC 50581]
          Length = 501

 Score = 41.7 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 58/191 (30%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILI 105
           WP+  ++L GP+G+GK+ +A+  + ++    F+     + S                   
Sbjct: 245 WPTTGLLLYGPAGTGKTLMASAVATQAGYNFFNVAVSDIVSKWKGEAVLCVRALYTIARA 304

Query: 106 DTRKPVLLEDIDLL------DFNDTQL-----F--------HIINSIHQYD-----SSLL 141
                V +++ID L        ++T +     F        H +    + D      +L+
Sbjct: 305 CAPSVVFIDEIDALVSGDSRTTDETSIQIRTEFQTQLDGFQHKMLDSVEEDLSFNPDTLV 364

Query: 142 MT--ARTFPVSWGVCLPDLC---SRLKAATVVKISLPDDDFLEKVIVKMFA-DRQIFIDK 195
           +T  A  FP  W +  P L    SR      + I LPD+  +++++      +RQ   D 
Sbjct: 365 ITIGATNFP--WKLDGPILRRFTSR------IYIGLPDEATIKELLTIYVDFERQ---DP 413

Query: 196 KL-AAYIVQRM 205
            +   ++  R+
Sbjct: 414 SVTIDWLASRL 424


>gi|153829956|ref|ZP_01982623.1| putative Cell division protein FtsH homolog [Vibrio cholerae
           623-39]
 gi|148874542|gb|EDL72677.1| putative Cell division protein FtsH homolog [Vibrio cholerae
           623-39]
          Length = 320

 Score = 41.7 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 42/160 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
               ++L GP G GK+  A   + +  +  F+                NI     +    
Sbjct: 65  AGGGLLLYGPPGCGKTYFARAIAGECHAAFFNVSIDDILDMYLGNSEKNIQALFATARAH 124

Query: 107 TRKPVLLEDIDLLDFNDTQLFH-----IINSIH--------QYDSSLLMTARTFP--VSW 151
               + +++ID L      L H      IN             ++ L++ A   P  V  
Sbjct: 125 KPAVIFIDEIDALGRKRELLRHTSLTTTINHFLAELDGVESDNENLLVIGATNAPWDVDS 184

Query: 152 GVCLP---DLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
               P   DL         + +S PD    + ++ ++ AD
Sbjct: 185 AFRRPGRFDL--------TLFVSPPDAKARQDILQRLLAD 216


>gi|116326272|ref|YP_802992.1| gp44 clamp-loader subunit [Enterobacteria phage RB32]
 gi|115343865|gb|ABI94874.1| gp44 clamp-loader subunit [Enterobacteria phage RB32]
          Length = 319

 Score = 41.7 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 72/184 (39%), Gaps = 36/184 (19%)

Query: 65  RVVILVGPS-GSGKSCLANIWSDKSRS--------------TRFSNIAKSLDSILIDTRK 109
             +IL  PS G+GK+ +A        +               R      +  +     +K
Sbjct: 43  PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQK 102

Query: 110 PVLLEDIDLLDFNDTQLFHI--INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
            +++++ D     ++Q  H+      +  + S+++TA     +    +  L SR   + V
Sbjct: 103 VIVIDEFDRSGLAESQR-HLRSFMEAYSSNCSIIITA----NNIDGIIKPLQSR---SRV 154

Query: 168 VKISLPDD----DFLEKVIVKM---FADRQIFIDK-KLAAYIVQRMERSLVFAEKLVDKM 219
           +    P D    + ++++I ++        I I   K+ A +V++   +     K + ++
Sbjct: 155 ITFGQPTDEDKIEMMKQMIRRLTEICKREGIAIADMKVVAALVKK---NFPDFRKTIGEL 211

Query: 220 DNLA 223
           D+ +
Sbjct: 212 DSYS 215


>gi|308474132|ref|XP_003099288.1| CRE-CDC-48.3 protein [Caenorhabditis remanei]
 gi|308267427|gb|EFP11380.1| CRE-CDC-48.3 protein [Caenorhabditis remanei]
          Length = 728

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 63  PSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P   V++ G  GSGK+ L   +    S +  +      L  +  D    V++ D++ ++ 
Sbjct: 274 PPCSVLIWGLPGSGKTLLLQELSRVLSGNVTYIGSCDELVELGGDVTGQVVIVDLNEVEK 333

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
            ++++ H +  +   + + ++ +     S      DL  R++     +I++P  +   ++
Sbjct: 334 ENSKVNHALGKLLAEEKTCVILSVRSSESL-----DLGFRVRFPVEAEITVPTQEERLEI 388

Query: 182 IVKMFAD 188
           + K+ A+
Sbjct: 389 LSKISAN 395


>gi|293375861|ref|ZP_06622127.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909]
 gi|325841821|ref|ZP_08167481.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1]
 gi|292645506|gb|EFF63550.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909]
 gi|325489851|gb|EGC92203.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1]
          Length = 677

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 53/224 (23%)

Query: 42  DLLVHSA--IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           D L   A   E   R+       P  ++ LVGP G+GK+ LA   + ++    +S     
Sbjct: 203 DFLKSPAKYNEMGARV-------PKGIL-LVGPPGTGKTLLARAVAGEAGVPFYSISGSD 254

Query: 100 LDSILIDTRKP----------------VLLEDIDLLDFN------------DTQLFHI-- 129
              + +                     + +++ID +               +  L  +  
Sbjct: 255 FVEMFVGVGASRVRDMFQTAKKTAPCIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQLLV 314

Query: 130 -INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKM 185
            ++        ++M A   P      L      L+       + I  PD    E ++   
Sbjct: 315 EMDGFGPNSGIIVMAATNRPDVLDPAL------LRPGRFDRQITIGRPDVKGREAILKVH 368

Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
             ++++  + +L   I +R       A  L + ++  AL     
Sbjct: 369 ARNKRLAPEVRLED-IARRTP-GFSGA-DLENLLNESALLAARE 409


>gi|255710671|ref|XP_002551619.1| KLTH0A03696p [Lachancea thermotolerans]
 gi|238932996|emb|CAR21177.1| KLTH0A03696p [Lachancea thermotolerans]
          Length = 781

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S ST FS  A SL S  +   + ++
Sbjct: 528 PVRGMLLFGPPGTGKTMLARAVATESNSTFFSISASSLTSKYLGESEKLV 577


>gi|242012194|ref|XP_002426820.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
 gi|212511027|gb|EEB14082.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
          Length = 559

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++R   F       D IL+    
Sbjct: 145 VLLVGPPGTGKTLLARAVAGEARVPFFHAAGPEFDEILVGQGA 187


>gi|198457521|ref|XP_001360696.2| GA15351 [Drosophila pseudoobscura pseudoobscura]
 gi|198136008|gb|EAL25271.2| GA15351 [Drosophila pseudoobscura pseudoobscura]
          Length = 801

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       + +PD   RL+   V++I   +    E V + ++ A+    +   LA+
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
                   S    +++ +KMD
Sbjct: 411 LC------SEAALQQIREKMD 425



 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|162148915|ref|YP_001603376.1| transposase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787492|emb|CAP57088.1| putative transposase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 259

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 26/145 (17%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKS- 88
           FP    ++  D       E  VR +     +  R   V+L+G  G+GK+ LA   + ++ 
Sbjct: 69  FPAYKDLAGFDFSAAEVNEAMVRQL-HAGDFIDRADNVVLIGGPGTGKTHLATALAVQAI 127

Query: 89  -------RSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLF 127
                  R     ++  +L+      R   + E    +DL+  ++             LF
Sbjct: 128 EHHRKKIRFWSTVDLVNALEQEKTANRAGQIAERLLRLDLVILDELGYLPFSASGGALLF 187

Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152
           H+++ +++  +S+++T       WG
Sbjct: 188 HLLSRLYER-TSVIITTNLSFSEWG 211


>gi|146302995|ref|YP_001190311.1| AAA family ATPase [Metallosphaera sedula DSM 5348]
 gi|145701245|gb|ABP94387.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348]
          Length = 768

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 77/224 (34%), Gaps = 70/224 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + ++L GP G GK+ LA   ++++ S              +    + L  I  D +K 
Sbjct: 224 PPKGIMLYGPPGVGKTLLAKAVANETESYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 283

Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFP------ 148
               + ++++D +    ++           QL  +++ +    + +++ A   P      
Sbjct: 284 APAIIFIDEVDAIAPKRDEVIGEVERRVVAQLLTLMDGLESRGNVIVIAATNRPNAVDPA 343

Query: 149 --------VSWGVCLPDLCSRL-------KAATV---VKISLPDD-------DFLEKVIV 183
                       + LPD   RL       +   +   V++    D         L  ++ 
Sbjct: 344 LRRPGRFDREIEIPLPDKQGRLEILQIHTRNMPLSKDVELEKLADISHGYTGADLSALVR 403

Query: 184 KMF--ADR---------QIFIDKKLAAYIVQRMERSLVFAEKLV 216
           +    A R         Q  I  ++   +  +ME  +   +++V
Sbjct: 404 EAAMNALRRYLPMIDISQDKIPPEILERMEVKMEDFMNAFKEIV 447



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 497 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 528


>gi|85717455|ref|ZP_01048403.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85717580|ref|ZP_01048522.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695585|gb|EAQ33501.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695701|gb|EAQ33611.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 287

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 98  QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206


>gi|85717483|ref|ZP_01048430.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695678|gb|EAQ33589.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 287

 Score = 41.7 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 98  QRNVVLVGGTGTGKTHLAIAIARSCIQSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206


>gi|195379959|ref|XP_002048738.1| GJ21209 [Drosophila virilis]
 gi|194143535|gb|EDW59931.1| GJ21209 [Drosophila virilis]
          Length = 801

 Score = 41.7 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       + +PD   RL+   V++I   +    E V + ++ A+    +   LA+
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
                   S    +++ +KMD
Sbjct: 411 LC------SEAALQQIREKMD 425



 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|157693158|ref|YP_001487620.1| recombination factor protein RarA [Bacillus pumilus SAFR-032]
 gi|157681916|gb|ABV63060.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus
           SAFR-032]
          Length = 421

 Score = 41.7 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 68/197 (34%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTRFS--NIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  +        +   +  ++        +  +  ++L+++ 
Sbjct: 41  MILYGPPGIGKTSIATAIAGSTSIAFRTLNAVIHNKKDMEAVAAEAKMSGQVILILDEVH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD              +    +L+ A T      +  P + SR     + ++   + + 
Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELKPLETEQ 153

Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
           ++  + +   D  R +      +D +   +               ++ ++   LS     
Sbjct: 154 IKAALTRALQDEHRGLGGYEVTVDDEAMHHFANGCG---GDVRSALNALELAVLSTKADE 210

Query: 230 -----ITRSLAAEVLKE 241
                IT + A E L++
Sbjct: 211 AGHIVITLAAAEECLQK 227


>gi|225436679|ref|XP_002262762.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 433

 Score = 41.7 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P R  +L GP G+GKS LA   + ++ ST FS  +  L S                    
Sbjct: 162 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARES 221

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    H     L++ A   P +  
Sbjct: 222 APSIIFIDEIDSLCGQRGESNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD 281

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 282 QAIRRRFDKRIYIPLPDLKAR 302


>gi|50310633|ref|XP_455337.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644473|emb|CAG98045.1| KLLA0F05676p [Kluyveromyces lactis]
          Length = 830

 Score = 41.7 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 80/205 (39%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 247 PPKGILMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNIVVIAATNRPNSIDPA 366

Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD+  RL+   V++I      L DD  L     K+ A+   ++  
Sbjct: 367 LRRFGRFDREVDIGVPDVTGRLE---VLRIHTKNMKLADDVDL----EKLAAETHGYVGA 419

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            +A+        S    +++ +KMD
Sbjct: 420 DIASLC------SEAAMQQIREKMD 438



 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PS+ V+  GP G+GK+ LA   + +  +                   SNI    D     
Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579

Query: 107 TRKPVLLEDIDLLD 120
               V L+++D + 
Sbjct: 580 APTVVFLDELDSIA 593


>gi|313206012|ref|YP_004045189.1| DNA polymerase iii, subunits gamma and tau [Riemerella
           anatipestifer DSM 15868]
 gi|312445328|gb|ADQ81683.1| DNA polymerase III, subunits gamma and tau [Riemerella
           anatipestifer DSM 15868]
          Length = 559

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 46/208 (22%)

Query: 64  SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++ ++  GP G GK+  A I +    +K  +T     + ++  +   +     ++DI  L
Sbjct: 39  AQALLFCGPRGVGKTTCARILARKINEKDGATSEDGFSYNIFELDAASNNS--VDDIREL 96

Query: 120 D----------------FNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCL------ 155
                             ++  +      N+        L T    P      L      
Sbjct: 97  TDQVRYAPQVGKYKVYIIDEVHMLSSQAFNAF-------LKTLEEPPAHAIFILATTEKH 149

Query: 156 ---PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
              P + SR     +        + ++  + K+     I  +      I Q+ +      
Sbjct: 150 KIIPTILSR---CQIYDFKRITIEDIQGHLRKIADKEGISYEDDALFLIAQKAD---GAL 203

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLK 240
              +   D L       IT + AAEVL 
Sbjct: 204 RDALSIFDRLVTFTQKNITLAKAAEVLN 231


>gi|299753266|ref|XP_001833167.2| CHTF18 protein [Coprinopsis cinerea okayama7#130]
 gi|298410221|gb|EAU88856.2| CHTF18 protein [Coprinopsis cinerea okayama7#130]
          Length = 940

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------PVLLED 115
            + ++L GP G GK+ LA++ + ++   R  N+        ++            V++++
Sbjct: 281 EKFLLLSGPPGLGKTTLAHVIAKQAGDARSGNVVDDRIRPTLEAGSTVGSTKPVLVVIDE 340

Query: 116 IDLLDF 121
           ID    
Sbjct: 341 IDGATG 346


>gi|302546908|ref|ZP_07299250.1| AAA family ATPase [Streptomyces hygroscopicus ATCC 53653]
 gi|302464526|gb|EFL27619.1| AAA family ATPase [Streptomyces himastatinicus ATCC 53653]
          Length = 434

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 36/188 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            IL GP G GK+ +A + + ++ +  F  ++ +   +  + RK              T L
Sbjct: 53  AILWGPPGVGKTTIARLLA-RAGNLAFEPVSATFSGVA-ELRKVFAAAQRRRGIGQGTLL 110

Query: 127 F----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N           +  +  L+  T              L SR     V+ +  
Sbjct: 111 FVDEIHRFNRAQQDSFLPYVEDGTITLIGATTENPSFELNGA---LLSR---TQVLVLKR 164

Query: 173 PDDDFLEKVIVKM-------------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            D+  L  ++ +                   I +      Y++  M   L         M
Sbjct: 165 LDEAALSTLLHRAEQLTGHRLPLGDDARRALIAMADGDGRYLLN-MAEQLQALPDTETTM 223

Query: 220 DNLALSRG 227
           D  AL+  
Sbjct: 224 DTTALAHH 231


>gi|303273262|ref|XP_003055992.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462076|gb|EEH59368.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 439

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 58/188 (30%), Gaps = 65/188 (34%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 203 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARLVRELFQLARSK 261

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 262 KACLIFFDEVDAIGGARFDDGQGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 321

Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P               LPDL SR     + +I                  R + +++ +
Sbjct: 322 DPALLRPGRLDRKVEFGLPDLDSR---TQIFRIHS----------------RSMAVERDI 362

Query: 198 AAYIVQRM 205
              ++ R+
Sbjct: 363 RYELLSRL 370


>gi|145345157|ref|XP_001417088.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577314|gb|ABO95381.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 169

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +++ G  G+GK+ LA+  + +  + R    A               +ED D  + ++ 
Sbjct: 6   PFILVTGVPGAGKTTLADALATRIDAKRIDVGALCAREGFHGAY----VEDADTHELDED 61

Query: 125 QLFHII 130
            L   +
Sbjct: 62  ALLDRM 67


>gi|145343613|ref|XP_001416411.1| ATP/GTP-binding protein, putative [Ostreococcus lucimarinus
           CCE9901]
 gi|144576636|gb|ABO94704.1| ATP/GTP-binding protein, putative [Ostreococcus lucimarinus
           CCE9901]
          Length = 432

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V L+G SGSGK+ L N W  +         A + +  + ++    +L+  D   +   Q
Sbjct: 76  TVCLIGRSGSGKTHLLN-WLLRHDFDSKVEPALT-EQKMKESLTVTVLDSFDESIYWTPQ 133

Query: 126 LFHI 129
           LFH+
Sbjct: 134 LFHL 137


>gi|89899601|ref|YP_522072.1| ATPase [Rhodoferax ferrireducens T118]
 gi|89344338|gb|ABD68541.1| ATPase [Rhodoferax ferrireducens T118]
          Length = 452

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 13/84 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT-----RKPVLLEDID 117
             R ++L GP+GSGK+ LA               A S+   +I        +P++++   
Sbjct: 167 SGRPILLYGPAGSGKTYLAERLQRLITGAVAIPYAISVHGEVIRVFDAQCHRPLVVDGAP 226

Query: 118 LLDFNDTQLFHIINSIHQYDSSLL 141
               +        N        +L
Sbjct: 227 RAALD--------NRARPDARWVL 242


>gi|317486086|ref|ZP_07944936.1| hypothetical protein HMPREF0179_02291 [Bilophila wadsworthia 3_1_6]
 gi|316922659|gb|EFV43895.1| hypothetical protein HMPREF0179_02291 [Bilophila wadsworthia 3_1_6]
          Length = 884

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 39/193 (20%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVIL--VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
            +   A  L     +  +R + +   GPS SGKS L +  +  +  +  + +        
Sbjct: 43  ESNRLARAL-RKEAATAARKMCVGVFGPSQSGKSYLISALAQDADGSLLTALGDESADF- 100

Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK- 163
                   ++DI+     ++             +   +T    P  + V L  L S L  
Sbjct: 101 --------IQDINPAGGKEST---------GLVTRFTLTPSGAPAMFPVKLR-LLSELDI 142

Query: 164 --------AATVVKISLPDDDFLEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSL 209
                    A    ++ PD+D L   +  +         R  F +  +   + + + R+ 
Sbjct: 143 VKILTNTYYADCRHLTPPDEDALAARVDALAKKAKGEPWRASFSEDDMID-LKEYVTRNF 201

Query: 210 VFAEKLVDKMDNL 222
                +V ++++L
Sbjct: 202 RA-TAVVQRLEHL 213


>gi|300124005|emb|CBK25276.2| unnamed protein product [Blastocystis hominis]
          Length = 388

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 14/76 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ +A   +   ++T    +A SL    +     V+ E            
Sbjct: 166 VLLYGPPGTGKTLIAKALASSIKATFIKTVASSLIEKYVGESSRVVRE------------ 213

Query: 127 FHIINSIHQYDSSLLM 142
             + N   Q+  +++ 
Sbjct: 214 --LFNYARQHTPAVVF 227


>gi|242809506|ref|XP_002485383.1| mitochondrial AAA ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218716008|gb|EED15430.1| mitochondrial AAA ATPase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1433

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 35/171 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------- 109
             ++L GP G+GK+ LA   + +S +T        +  + +   +               
Sbjct: 720 PGMLLYGPPGTGKTLLAKAVARESGATVLEVSGSDIYDMYVGEGEKNVKAIFTLAKKLSP 779

Query: 110 -PVLLEDIDLLDFNDTQL---F--H--IINSI-HQYDS-----SLLMTARTFPVSWGVCL 155
             V +++ D +  +  Q    F  H  +IN    ++D      + +M A   P      L
Sbjct: 780 CVVFIDEADAIFGSRNQSRNRFSSHRELINQFLREWDGMNDMSAFIMVATNRP----FDL 835

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            D     +    + + LP +   E ++     + Q+     LA  + +R  
Sbjct: 836 DDAVL-RRLPRRLLVDLPVEQDREAILKIHLKNEQLDPSVDLAD-LARRTP 884


>gi|238607311|ref|XP_002396945.1| hypothetical protein MPER_02714 [Moniliophthora perniciosa FA553]
 gi|215470438|gb|EEB97875.1| hypothetical protein MPER_02714 [Moniliophthora perniciosa FA553]
          Length = 226

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  ++ GP G+GK+ LA   + ++ +        SL  + I     ++ +
Sbjct: 161 PPKGCLMYGPPGTGKTLLARACAAQTNACYLKLAGPSLVQMFIGDGAKLVRD 212


>gi|208435780|pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
           Atpgammas
 gi|208435781|pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
           Atpgammas
 gi|208435782|pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
           Atpgammas
          Length = 340

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 41/140 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 68  PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 127

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152
                 ++ +D L                T+L   +N + +     L++ A   P     
Sbjct: 128 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 187

Query: 153 -----------VCLPDLCSR 161
                      + LPDL +R
Sbjct: 188 AIRRRFERRIYIPLPDLAAR 207


>gi|188527230|ref|YP_001909917.1| recombination factor protein RarA [Helicobacter pylori Shi470]
 gi|188143470|gb|ACD47887.1| recombination factor protein RarA [Helicobacter pylori Shi470]
          Length = 391

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  + ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVIFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCAKALTLLKKQIEPGAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|167462709|ref|ZP_02327798.1| XkdC [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 273

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 21/121 (17%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA----------------KSLDSILIDT 107
           S  + L+G  G+GK+ L    ++   +     +                        +  
Sbjct: 130 SNSIALLGRPGAGKTHLLMAVANNLLARGIGVVYFPYVEGFNELRKDLDQLDERVRRLQQ 189

Query: 108 RKPVLLEDI-----DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
            + + ++D+     +  ++   QLF IIN  +     +L+++             + SRL
Sbjct: 190 AEVLFIDDLFKGRSEPTEWQKEQLFAIINYRNLQKLPMLISSERNFAQMVDIDEAIGSRL 249

Query: 163 K 163
           +
Sbjct: 250 R 250


>gi|148551048|ref|YP_001260478.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|148503459|gb|ABQ71711.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii
           RW1]
          Length = 242

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 22/109 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNI-------------AKSLDSILID 106
           R ++LVG +G+GK+ LA+  +       +R   F+ +                  +  + 
Sbjct: 99  RNIVLVGGTGTGKTHLASAIAASVIRAGARGRYFNTVDLVTQLEEETRIGKAGALAAQLR 158

Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
             + V+L+++  L F       LFH+I+ +++  +S+++T       W 
Sbjct: 159 RHELVVLDELGYLPFARSGGQLLFHLISKLYE-QTSVIITTNLTFGEWP 206


>gi|50547369|ref|XP_501154.1| YALI0B20834p [Yarrowia lipolytica]
 gi|49647020|emb|CAG83407.1| YALI0B20834p [Yarrowia lipolytica]
          Length = 1050

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S  +   + ++
Sbjct: 800 PARGMLLFGPPGTGKTMLARAVATESNSTFFSISASSLTSKFLGESEKLV 849


>gi|14349166|dbj|BAB60709.1| Werner helicase interacting protein [Homo sapiens]
          Length = 665

 Score = 41.7 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             + L GP G GK+ LA+I +  S+      +  S  +   +      + D+     N+ 
Sbjct: 262 PSLNLWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316

Query: 125 QLF-----------HIINSIHQY 136
             F           H  N   Q 
Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339


>gi|330881213|gb|EGH15362.1| recombination factor protein RarA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 195

 Score = 41.7 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 27/160 (16%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +   +  A       I     V  +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVAKQQA 99

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKK 196
             A V  +   D+  L K++ +   +      RQ+ +  +
Sbjct: 155 --ARVYVLKSLDEGALRKLVHRALTEERGLGKRQLTLSDE 192


>gi|328864072|gb|EGG13171.1| cell division cycle protein cdc48 [Melampsora larici-populina
           98AG31]
          Length = 820

 Score = 41.7 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 79/201 (39%), Gaps = 52/201 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 243 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 302

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 303 APAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 362

Query: 152 -----------GVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       V +PD   RL+   +++I   +    E V + K+ AD   ++   +A+
Sbjct: 363 LRRFGRFDREVDVGIPDATGRLE---ILRIHTKNMKLGEDVDLEKIAADTHGYVGSDVAS 419

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
                   S    +++ +KMD
Sbjct: 420 LC------SEAAMQQIREKMD 434



 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G+GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 516 PSKGVLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 572


>gi|271961638|ref|YP_003335834.1| cell division cycle protein 48-related protein [Streptosporangium
           roseum DSM 43021]
 gi|270504813|gb|ACZ83091.1| cell division cycle protein 48-related protein [Streptosporangium
           roseum DSM 43021]
          Length = 448

 Score = 41.7 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
               V+L GP G+GK+ LA   + +  +   +     +  + I + +
Sbjct: 201 AGGGVLLYGPPGAGKTHLARAAAGELGAAFVNVGLADILDMYIGSSE 247


>gi|195150721|ref|XP_002016299.1| GL11509 [Drosophila persimilis]
 gi|194110146|gb|EDW32189.1| GL11509 [Drosophila persimilis]
          Length = 626

 Score = 41.7 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       + +PD   RL+   V++I   +    E V + ++ A+    +   LA+
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
                   S    +++ +KMD
Sbjct: 411 LC------SEAALQQIREKMD 425



 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + + +D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDILDKA 563


>gi|162146236|ref|YP_001600695.1| tranposase [Gluconacetobacter diazotrophicus PAl 5]
 gi|162149567|ref|YP_001604028.1| transposase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544802|ref|YP_002277031.1| IstB domain-containing protein ATP-binding protein
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161784811|emb|CAP54354.1| putative tranposase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788144|emb|CAP57749.1| putative transposase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532479|gb|ACI52416.1| IstB domain protein ATP-binding protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 259

 Score = 41.7 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 26/145 (17%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKS- 88
           FP    ++  D       E  VR +     +  R   V+L+G  G+GK+ LA   + ++ 
Sbjct: 69  FPAYKDLAGFDFSAAEVNEAMVRQL-HAGDFIDRADNVVLIGGPGTGKTHLATALAVQAI 127

Query: 89  -------RSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLF 127
                  R     ++  +L+      R   + E    +DL+  ++             LF
Sbjct: 128 EHHRKKIRFWSTVDLVNALEQEKTANRAGQIAERLLRLDLVILDELGYLPFSASGGALLF 187

Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152
           H+++ +++  +S+++T       WG
Sbjct: 188 HLLSRLYER-TSVIITTNLSFSEWG 211


>gi|156842059|ref|XP_001644399.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115041|gb|EDO16541.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 432

 Score = 41.7 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 209 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 260


>gi|149237877|ref|XP_001524815.1| vacuolar protein sorting-associated protein VPS4 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146451412|gb|EDK45668.1| vacuolar protein sorting-associated protein VPS4 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 487

 Score = 41.7 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 43/143 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 212 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLFTMARES 271

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152
                 ++++D L                T+L   +N + +     L++ A   P     
Sbjct: 272 KPSIIFIDEVDALCGPRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDA 331

Query: 153 -----------VCLPDL--CSRL 162
                      + LPD+   SR+
Sbjct: 332 AIRRRFERRIYIPLPDVEARSRM 354


>gi|14521065|ref|NP_126540.1| cell division protein CDC48 [Pyrococcus abyssi GE5]
 gi|5458282|emb|CAB49771.1| ATPase of the AAA+ family [Pyrococcus abyssi GE5]
          Length = 363

 Score = 41.7 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 50  EQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108
            QA+ L I   P  P + ++L GP G+GKS LA+  ++   +T FS  A  L S      
Sbjct: 106 AQAIGLSIAKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGES 165

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG-VCLPDLCSRLKAATV 167
             ++           + LF +     Q   S++       ++   V L D   R+    +
Sbjct: 166 SKLI-----------SALFSL---ARQLSPSVIFIDEVDSLTMKRVSLDDAARRMIGTLL 211

Query: 168 VKIS 171
            ++ 
Sbjct: 212 AEMD 215


>gi|328881973|emb|CCA55212.1| putative ATP-binding protein [Streptomyces venezuelae ATCC 10712]
          Length = 491

 Score = 41.7 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 64/199 (32%), Gaps = 42/199 (21%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLF--FSFPRCLGISRD-DLLV---HSAIEQAVRLIDSW- 59
            +    PD Q+    +    QL      P      +  DLL+   + A  Q   L  +W 
Sbjct: 123 GWDILTPDPQEVCWRRT---QLTGELPLPVKDTDGKGIDLLMRLCNFANAQTESLAIAWL 179

Query: 60  -----PSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
                PS P     L GP G+GKS     L  I    +   R +   +      +     
Sbjct: 180 IGCLGPSVPVPAPFLTGPQGAGKSTGARMLLRIIEGMTSDLRRAPKDEENLIAAVAAGWV 239

Query: 111 VLLEDIDLLDFN---------------DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVC 154
             L+++  L  +                  LF   + +       LL+T     +  GV 
Sbjct: 240 TALDNLSHLGPDLSDLMCCIVTGAETIKRALFTDGDVVRSRYRKPLLLTG----IDVGVI 295

Query: 155 LPDLCSRLKAATVVKISLP 173
            PDL  RL     +++  P
Sbjct: 296 RPDLAERL---LPLRLERP 311


>gi|325963037|ref|YP_004240943.1| ATPase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469124|gb|ADX72809.1| putative ATPase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 345

 Score = 41.7 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA++W               +     ++       + + K V +++
Sbjct: 83  IYLDGGFGVGKTHLLASLWHASPGPKAFGTFVEYTNLVGALSFRKTVEALSSYKLVCIDE 142

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
            +L D  DT L   ++  +      L  T+ T P S G
Sbjct: 143 FELDDPGDTVLMSRLMRELADAGVKLAATSNTLPGSLG 180


>gi|294900019|ref|XP_002776859.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239884060|gb|EER08675.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 901

 Score = 41.7 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++ ++L GP G GKS LA I + +  +T   
Sbjct: 587 AKSILLYGPKGCGKSLLARIIATEVGATFID 617


>gi|255713900|ref|XP_002553232.1| KLTH0D11990p [Lachancea thermotolerans]
 gi|238934612|emb|CAR22794.1| KLTH0D11990p [Lachancea thermotolerans]
          Length = 433

 Score = 41.7 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 210 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 261


>gi|168988715|pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
          Length = 331

 Score = 41.7 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 41/140 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 59  PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 118

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152
                 ++++D L                T+L   +N + +     L++ A   P     
Sbjct: 119 KPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 178

Query: 153 -----------VCLPDLCSR 161
                      + LPDL +R
Sbjct: 179 AIRRRFERRIYIPLPDLAAR 198


>gi|50305331|ref|XP_452625.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641758|emb|CAH01476.1| KLLA0C09592p [Kluyveromyces lactis]
          Length = 434

 Score = 41.7 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 211 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 262


>gi|88856891|ref|ZP_01131543.1| ATP/GTP-binding integral membrane protein [marine actinobacterium
           PHSC20C1]
 gi|88813859|gb|EAR23729.1| ATP/GTP-binding integral membrane protein [marine actinobacterium
           PHSC20C1]
          Length = 336

 Score = 41.7 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 12/100 (12%)

Query: 65  RVVILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLL 113
             V L G  G GK+  LA +W   +           +     +  +    L+     V +
Sbjct: 81  PGVYLDGGFGVGKTHLLAALWHQMAGRKYFGTFIEYTALVGAVGYAPAVQLLKGASLVCI 140

Query: 114 EDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
           ++ +L D  DT+L   +++ +    + +  T+ T P + G
Sbjct: 141 DEFELDDPGDTRLISRLLSELVASGTKIAATSNTPPNALG 180


>gi|109898773|ref|YP_662028.1| recombination factor protein RarA [Pseudoalteromonas atlantica T6c]
 gi|109701054|gb|ABG40974.1| Recombination protein MgsA [Pseudoalteromonas atlantica T6c]
          Length = 445

 Score = 41.7 bits (97), Expect = 0.098,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 38/200 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G+GK+ LA I +    +      A +     I +     +E       N  + 
Sbjct: 55  MILWGPPGTGKTTLAEIIAMHCDAHIERISAVTSGVKDIRS----AIEQAKQNALNQAKR 110

Query: 126 --LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVK 169
             LF    H  N   Q        D ++     T              L SR   A V  
Sbjct: 111 TILFVDEVHRFNKSQQDAFLPFIEDGTITFIGATTENPSFELNGA---LLSR---ARVYV 164

Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    ++ L  +  +   D  R      + I+ K  A +    E +   A +L++ ++  
Sbjct: 165 LKSLTENDLTDIAKRALTDEPRGLGQLALQIEDKGIALL---TELAGGDARRLLNYIELA 221

Query: 223 A-LSRGMGITRSLAAEVLKE 241
           A  S    IT     E + E
Sbjct: 222 ADFSTEGKITLEAIKEAVGE 241


>gi|47197726|emb|CAF89426.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 230

 Score = 41.7 bits (97), Expect = 0.098,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 131 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 180


>gi|85716443|ref|ZP_01047415.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85696800|gb|EAQ34686.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 287

 Score = 41.7 bits (97), Expect = 0.098,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 98  QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206


>gi|71002728|ref|XP_756045.1| cell division control protein Cdc48 [Aspergillus fumigatus Af293]
 gi|28394450|gb|AAM08677.1| Cdc48p [Aspergillus fumigatus]
 gi|66853683|gb|EAL94007.1| cell division control protein Cdc48 [Aspergillus fumigatus Af293]
 gi|159130099|gb|EDP55213.1| cell division control protein Cdc48 [Aspergillus fumigatus A1163]
          Length = 819

 Score = 41.7 bits (97), Expect = 0.098,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374

Query: 155 L 155
           L
Sbjct: 375 L 375



 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 41/175 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PSR V+  GP G+GK+ LA   +++  +                   SNI    D     
Sbjct: 529 PSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAA 588

Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
               V L+++D +  +                 QL   ++ +    +  ++ A   P   
Sbjct: 589 APCVVFLDELDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 648

Query: 152 GVCL--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQ 203
              L  P    RL   T+V + LPD    E ++      R+  +   +   +I  
Sbjct: 649 DAALVRP---GRLD--TLVYVPLPDQASRESIL--RAQLRKTPVAPDVDIPFIAS 696


>gi|224132668|ref|XP_002321379.1| predicted protein [Populus trichocarpa]
 gi|222868375|gb|EEF05506.1| predicted protein [Populus trichocarpa]
          Length = 390

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 35/150 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P + V+L GP G+GK+ LA   + +S +   +                 +A         
Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 177

Query: 107 TRKPVLLEDIDLLDFNDTQLFH--IINS------------IHQYDSSLLMTARTFPVSWG 152
               + ++++D          H  + N               Q    +++ A   P    
Sbjct: 178 QPAIIFIDEVDSFLGQRRTTDHEALTNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELD 237

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             +  L  RL  A   +I +PD     +++
Sbjct: 238 EAI--LR-RLPQA--FEIGMPDQRERAEIL 262


>gi|208435779|pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
           State
          Length = 322

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 41/140 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 50  PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 109

Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152
                 ++ +D L                T+L   +N + +     L++ A   P     
Sbjct: 110 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 169

Query: 153 -----------VCLPDLCSR 161
                      + LPDL +R
Sbjct: 170 AIRRRFERRIYIPLPDLAAR 189


>gi|194870717|ref|XP_001972707.1| GG15672 [Drosophila erecta]
 gi|190654490|gb|EDV51733.1| GG15672 [Drosophila erecta]
          Length = 1006

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%)

Query: 47  SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92
             +E  V +++    WPSR               V+L GP G+GK+ L            
Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
            + +A S +  +I  + P LL     +  ++  + ++ N        +L 
Sbjct: 771 VAQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818


>gi|162147376|ref|YP_001601837.1| IstB-like ATP-binding protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|162148206|ref|YP_001602667.1| transposase [Gluconacetobacter diazotrophicus PAl 5]
 gi|162148387|ref|YP_001602848.1| IstB-like ATP-binding protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|162148484|ref|YP_001602945.1| transposase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542828|ref|YP_002275057.1| IstB domain-containing protein ATP-binding protein
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209543940|ref|YP_002276169.1| IstB domain-containing protein ATP-binding protein
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785953|emb|CAP55533.1| IstB-like ATP-binding protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786783|emb|CAP56366.1| putative transposase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786964|emb|CAP56549.1| putative IstB-like ATP-binding protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787061|emb|CAP56647.1| putative transposase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530505|gb|ACI50442.1| IstB domain protein ATP-binding protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531617|gb|ACI51554.1| IstB domain protein ATP-binding protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 259

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 26/145 (17%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKS- 88
           FP    ++  D       E  VR +     +  R   V+L+G  G+GK+ LA   + ++ 
Sbjct: 69  FPAYKDLAGFDFSAAEVNEAMVRQL-HAGDFIDRADNVVLIGGPGTGKTHLATALAVQAI 127

Query: 89  -------RSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLF 127
                  R     ++  +L+      R   + E    +DL+  ++             LF
Sbjct: 128 EHHRKKIRFWSTVDLVNALEQEKTANRAGQIAERLLRLDLVILDELGYLPFSASGGALLF 187

Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152
           H+++ +++  +S+++T       WG
Sbjct: 188 HLLSRLYER-TSVIITTNLSFSEWG 211


>gi|121705368|ref|XP_001270947.1| vacuolar sorting ATPase Vps4, putative [Aspergillus clavatus NRRL
           1]
 gi|119399093|gb|EAW09521.1| vacuolar sorting ATPase Vps4, putative [Aspergillus clavatus NRRL
           1]
          Length = 434

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIIF 229


>gi|109018127|ref|XP_001096523.1| PREDICTED: nuclear VCP-like isoform 3 [Macaca mulatta]
          Length = 750

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 191 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 250

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 251 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 310

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +P +   E+++  +   R++ + + 
Sbjct: 311 DPALR------RAGRFDREICLGIPGEASRERILQTLC--RKLRLPQA 350



 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 37/164 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P+ V+ L GP G GK+ LA   +++S     S     L ++ +   +             
Sbjct: 509 PAGVL-LAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNS 567

Query: 110 -PVLL--EDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152
            P ++  +++D L                 QL   ++ +       +M A   P      
Sbjct: 568 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPA 627

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
           +  P    RL     V +  P D      I+K            
Sbjct: 628 ILRP---GRLDKTLFVGLPPPTDRL---AILKTITKNGTKPPLD 665


>gi|73668447|ref|YP_304462.1| cell division control protein 48 [Methanosarcina barkeri str.
           Fusaro]
 gi|72395609|gb|AAZ69882.1| cell division control protein 48 [Methanosarcina barkeri str.
           Fusaro]
          Length = 754

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 59/164 (35%), Gaps = 39/164 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ +A   + ++ +                     + +  +    +
Sbjct: 209 PPKGVLLHGPPGTGKTLIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFEEAEKE 268

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ ++     +++ A   P S    
Sbjct: 269 APSIIFIDEIDSIAPKRGEVTGELERRVVAQLLSLMDGLNSRGEVVVIAATNRPNSIDEA 328

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
           L       +       ++I +PD +  ++++  +   R + I  
Sbjct: 329 LR------RGGRFDREIEIGIPDRNGRKQIL--LIHTRGMPIQD 364



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G+GK+ LA   + +S +   S     L S  +   +  + E
Sbjct: 481 PPRGVLLFGPPGTGKTLLAKAVASESEANFISIKGPELLSKYVGESERAVRE 532


>gi|67469139|ref|XP_650561.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56467200|gb|EAL45175.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 622

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 40/167 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P R ++L GP G GK+ LA   + +         A  L                      
Sbjct: 74  PPRGILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATELVGGMSGESESKIRDLFQLASQR 133

Query: 107 TRKPVLLEDIDLL------DFND------TQLFHIINSIHQYDSSLLMTART-FPVSWGV 153
               + +++ID +         +       QL   ++ + + D  +++   T  P S   
Sbjct: 134 APALLFIDEIDAITPKRDNAQREMERRIVAQLLSSLDKLSEADKPVIVIGATNRPDSLDP 193

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            L       +A      + + +P +    +++ KM  +  + ID  +
Sbjct: 194 ALR------RAGRFDREIALGIPSESQRRQILDKMMVN--LKIDSAV 232


>gi|330916411|ref|XP_003297409.1| hypothetical protein PTT_07804 [Pyrenophora teres f. teres 0-1]
 gi|311329919|gb|EFQ94491.1| hypothetical protein PTT_07804 [Pyrenophora teres f. teres 0-1]
          Length = 789

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+R ++L GP G+GK+ LA   + +SRST F+  A SL S  +   + ++          
Sbjct: 533 PARGMLLFGPPGTGKTMLARAVATESRSTFFAISASSLTSKFLGESEKLV---------- 582

Query: 123 DTQLFHI 129
              LF +
Sbjct: 583 -RALFQL 588


>gi|294896442|ref|XP_002775559.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239881782|gb|EER07375.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 459

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + ++ +T FS  +  L
Sbjct: 187 PWKGILLYGPPGTGKSYLAKACATEADATFFSVSSSDL 224


>gi|260945583|ref|XP_002617089.1| hypothetical protein CLUG_02533 [Clavispora lusitaniae ATCC
          42720]
 gi|238848943|gb|EEQ38407.1| hypothetical protein CLUG_02533 [Clavispora lusitaniae ATCC
          42720]
          Length = 548

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            +IL GP G GK+ LA+I + ++      
Sbjct: 55 PSMILYGPPGVGKTTLAHILAAETNHVFLE 84


>gi|227892533|ref|ZP_04010338.1| recombination ATPase [Lactobacillus ultunensis DSM 16047]
 gi|227865654|gb|EEJ73075.1| recombination ATPase [Lactobacillus ultunensis DSM 16047]
          Length = 441

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFN 122
             +IL GP G+GK+ LA I +  +++   +  A +     I      ++E+ +       
Sbjct: 53  PSLILWGPPGTGKTTLAEIIAKHTKAHFITFSAVTSSIKDIRK----IMEEAESNRQFGE 108

Query: 123 DTQLF----HIINSIHQY 136
            T +F    H  N   Q 
Sbjct: 109 KTIVFIDEIHRFNKAQQD 126


>gi|212716947|ref|ZP_03325075.1| hypothetical protein BIFCAT_01891 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660232|gb|EEB20807.1| hypothetical protein BIFCAT_01891 [Bifidobacterium catenulatum DSM
           16992]
          Length = 464

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 76/195 (38%), Gaps = 37/195 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ LA I + +S          ++  K +  +L      ++ E  + + F
Sbjct: 62  IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLRRAHDRLVAEGKETVLF 121

Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            D     +         +LL          + A T   S+ V  P L SR   + VVK+ 
Sbjct: 122 IDE----VHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVKLE 173

Query: 172 LPDDDFLEKVIVKMF-ADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--- 223
             + D L+ +I +   ++  +     I+ +    IV RM  +   A K +  ++  A   
Sbjct: 174 SLEPDDLKTLINRAIESEYGLKNEVKINDEAVDEIV-RM--AGGDARKTLTILEAAAGAL 230

Query: 224 ---LSRGMGITRSLA 235
               +R  G  R + 
Sbjct: 231 TGDKARKKGAKRPII 245


>gi|119492027|ref|XP_001263508.1| vacuolar sorting ATPase Vps4, putative [Neosartorya fischeri NRRL
           181]
 gi|119411668|gb|EAW21611.1| vacuolar sorting ATPase Vps4, putative [Neosartorya fischeri NRRL
           181]
          Length = 435

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 165 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 214

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 215 -KQLF---NMARENKPAIIF 230


>gi|114654361|ref|XP_001142567.1| PREDICTED: similar to P26s4 isoform 2 [Pan troglodytes]
          Length = 399

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|115391273|ref|XP_001213141.1| hypothetical protein ATEG_03963 [Aspergillus terreus NIH2624]
 gi|114194065|gb|EAU35765.1| hypothetical protein ATEG_03963 [Aspergillus terreus NIH2624]
          Length = 531

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 35/220 (15%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94
           LV         LI+         ++L G  G+GK+ +A + +    S             
Sbjct: 139 LVGP-NGVLRGLIEQDR---VPSMVLWGGPGTGKTTIARVIASMVGSRFVEINSTSTGVA 194

Query: 95  ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                 A++   + +  RK ++  ++I     +   +F       +     L+ A T   
Sbjct: 195 ECKKIFAEAKSELGLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENP 251

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQ 203
           S+ V    L SR        ++   D+ ++ ++ +              +D +L  Y+ +
Sbjct: 252 SFKVQSA-LLSR---CRTFTLAKLTDEDVKSILNRALQVEGPNYSPSALVDDELITYLAK 307

Query: 204 RMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLKET 242
             +     A   ++ ++          IT+      L +T
Sbjct: 308 FSD---GDARTSLNLLELAMDLSKRPDITKEELKRSLTKT 344


>gi|85713846|ref|ZP_01044836.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85714525|ref|ZP_01045513.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85715687|ref|ZP_01046667.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85716293|ref|ZP_01047267.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85716640|ref|ZP_01047610.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85716809|ref|ZP_01047776.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85717285|ref|ZP_01048240.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85717424|ref|ZP_01048374.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85717452|ref|ZP_01048401.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85717696|ref|ZP_01048632.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695493|gb|EAQ33415.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695754|gb|EAQ33663.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695779|gb|EAQ33687.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695926|gb|EAQ33829.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85696416|gb|EAQ34307.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85696641|gb|EAQ34529.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85696965|gb|EAQ34849.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85697626|gb|EAQ35503.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85698972|gb|EAQ36841.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85699750|gb|EAQ37617.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 286

 Score = 41.7 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 98  QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206


>gi|308159198|gb|EFO61741.1| Katanin [Giardia lamblia P15]
          Length = 509

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R V+L GP G+GK+ LA   + ++  T FS  A  ++S
Sbjct: 248 PWRGVLLFGPPGTGKTLLAKAIAMQAGFTFFSASASVIES 287


>gi|302784987|ref|XP_002974265.1| hypothetical protein SELMODRAFT_149735 [Selaginella moellendorffii]
 gi|300157863|gb|EFJ24487.1| hypothetical protein SELMODRAFT_149735 [Selaginella moellendorffii]
          Length = 340

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 36/174 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + ++R+   +    SL S  +   + ++          
Sbjct: 85  PQKGVLLYGPPGTGKTLLAKALAKEARAVFINVQIASLMSKWLGDAQKLVTAVFTLAHKL 144

Query: 113 ------LEDIDLLDFND------------TQLFHIIN--SIHQYDSSLLMTARTFPVSWG 152
                 ++++D                  T+   + +  +  Q    L++ A   P  W 
Sbjct: 145 QPSIIFIDEVDSFLGRRGVTSHEVMTQMKTEFMALWDGLTTDQNARVLVLAATNRP--WE 202

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
           +    L  RL  A   +I +PD      ++  +  + ++  D     Y+    +
Sbjct: 203 LDEAILR-RLPRA--FEIGMPDVKQRASILQVLLKEERVEDDLD-IDYLASLCD 252


>gi|259488300|tpe|CBF87639.1| TPA: AAA family ATPase/60S ribosome export protein Rix7, putative
           (AFU_orthologue; AFUA_1G09210) [Aspergillus nidulans
           FGSC A4]
          Length = 729

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 43/191 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ +AN ++ +      S  A S+                +     
Sbjct: 198 PPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEAKRL 257

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165
               + +++ID +           NS  + +  ++            C+ DL   L+   
Sbjct: 258 APCLIFIDEIDAITPKRE------NSQREMEKRIV-------AQLLTCMDDLA--LEKTD 302

Query: 166 --TVVKISL---PD--DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
              V+ ++    PD  D  L +              + +   I++ + R +    +LVD 
Sbjct: 303 GKPVIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKM----RLVDD 358

Query: 219 MDNLALSRGMG 229
           +D   L++   
Sbjct: 359 LDFKTLAKRTP 369



 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 506 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 551


>gi|225010505|ref|ZP_03700976.1| AAA ATPase central domain protein [Flavobacteria bacterium
          MS024-3C]
 gi|225005334|gb|EEG43285.1| AAA ATPase central domain protein [Flavobacteria bacterium
          MS024-3C]
          Length = 425

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 65 RVVILVGPSGSGKSCLANIWSDKS 88
            +IL GP G+GK+ LANI + ++
Sbjct: 40 PSIILWGPPGTGKTTLANIIAAQT 63


>gi|238484427|ref|XP_002373452.1| vacuolar sorting ATPase Vps4, putative [Aspergillus flavus
           NRRL3357]
 gi|317140519|ref|XP_001818235.2| vacuolar protein sorting-associated protein 4 [Aspergillus oryzae
           RIB40]
 gi|220701502|gb|EED57840.1| vacuolar sorting ATPase Vps4, putative [Aspergillus flavus
           NRRL3357]
          Length = 434

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIIF 229


>gi|195120371|ref|XP_002004702.1| GI19458 [Drosophila mojavensis]
 gi|193909770|gb|EDW08637.1| GI19458 [Drosophila mojavensis]
          Length = 801

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       + +PD   RL+   V++I   +    E V + ++ A+    +   LA+
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
                   S    +++ +KMD
Sbjct: 411 LC------SEAALQQIREKMD 425



 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|308802281|ref|XP_003078454.1| Predicted nucleotide kinase/nuclear protein involved oxidative
           stress response (ISS) [Ostreococcus tauri]
 gi|116056906|emb|CAL53195.1| Predicted nucleotide kinase/nuclear protein involved oxidative
           stress response (ISS) [Ostreococcus tauri]
          Length = 180

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
           +  +++ G  GSGK+ LA+  + +  + R    A               +E +D  +  +
Sbjct: 11  APFILITGVPGSGKTTLADALAARIDARRLDVGALCAAEGFHGAY----VEAMDTHELRE 66

Query: 124 TQLFHII 130
             L   +
Sbjct: 67  DALLDRM 73


>gi|300778766|ref|ZP_07088624.1| replication-associated recombination protein A [Chryseobacterium
           gleum ATCC 35910]
 gi|300504276|gb|EFK35416.1| replication-associated recombination protein A [Chryseobacterium
           gleum ATCC 35910]
          Length = 425

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 23/133 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDF 121
             +I  GP G+GK+ LA I S++S    +   A S     +      ++ED    +L   
Sbjct: 42  NSLIFWGPPGTGKTTLAEIISEQSGRKFYKLSAVSSGVKDVRD----VIEDAKKQNLFSG 97

Query: 122 NDTQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
               LF    H  N           +    +L+ A T   S+ V    L SR   + V  
Sbjct: 98  KSPILFIDEIHRFNKSQQDSLLHAVEKGWIVLIGATTENPSFEVVSA-LLSR---SQVYI 153

Query: 170 ISLPDDDFLEKVI 182
           +     + LE++I
Sbjct: 154 LKALSYEKLEELI 166


>gi|289583038|ref|YP_003481504.1| adenosinetriphosphatase [Natrialba magadii ATCC 43099]
 gi|289532591|gb|ADD06942.1| Adenosinetriphosphatase [Natrialba magadii ATCC 43099]
          Length = 746

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 62/173 (35%), Gaps = 39/173 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P   V+L GP G+GK+ +A   +++  +                     + ++ +    +
Sbjct: 259 PPSGVLLYGPPGTGKTLIARAVANEVDAHFVTISGPEIMSKYKGESEEQLRRTFEEAREN 318

Query: 107 TRKPVLLEDIDLLDF--NDT---------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
               +  ++ID +    +D          QL  +++ +      +++ A     S    L
Sbjct: 319 APTIIFFDEIDSIAGTRDDEGDAENRIVGQLLTLMDGLDARGEVIVIGATNRVDSIDPAL 378

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQR 204
                  +       ++I +PD+   ++++      R + + + +    + +R
Sbjct: 379 R------RGGRFDREIQIGVPDETGRKEILEVH--TRGMPLAEDVSVDALARR 423



 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 34/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P   V+L GP G+GK+ LA   + ++                       I K  +     
Sbjct: 526 PPSGVLLHGPPGTGKTLLARALAGETDVNFVRVDGPEIIDRYVGESEKAIRKVFERARQA 585

Query: 107 TRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
               V  ++ID +               +QL   ++ + +  + +++ A          L
Sbjct: 586 APSIVFFDEIDAITAARGEGHEVTERVVSQLLTELDGMRENPNLVVLAATNRKDQIDPAL 645

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             L   RL   T V +  PD    EK++      R   +   +
Sbjct: 646 --LRPGRLD--THVYVGEPDHAAREKILEVH--SRGKPLGDDV 682


>gi|220912427|ref|YP_002487736.1| AFG1-family ATPase [Arthrobacter chlorophenolicus A6]
 gi|219859305|gb|ACL39647.1| AFG1-family ATPase [Arthrobacter chlorophenolicus A6]
          Length = 345

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA++W               +     ++       + + K V +++
Sbjct: 83  IYLDGGFGVGKTHLLASLWHAAPGPKAFGTFVEYTNLVGALSFRKTVDALSSYKLVCIDE 142

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
            +L D  DT L   ++  +      L  T+ T P S G
Sbjct: 143 FELDDPGDTVLMSRLMRELADAGVKLAATSNTLPGSLG 180


>gi|167043583|gb|ABZ08278.1| putative Holliday junction DNA helicase ruvB C-terminal domain
           [uncultured marine microorganism HF4000_APKG2K17]
          Length = 354

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 77/201 (38%), Gaps = 27/201 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI++ +      S     ++           L+   +L  ++   
Sbjct: 71  VLLSGPPGLGKTTLANIFAREMEVQLRSTSGPVIERQGDLAAILTNLDPGSILFIDEI-- 128

Query: 127 FHIINSIHQ-------YDSSLLMTARTFP--VSWGVCLPD------------LCS--RLK 163
            H +N + +        D +L +     P   +  + LP             L S  R +
Sbjct: 129 -HRLNRVVEEVLYGAMEDFTLDIIIGEGPGARTVKIDLPHFTLVGATTRAGLLSSPLRER 187

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
                +++  D + L+ +I++  +   I I ++ +  + +R   +   A +L+ +  D  
Sbjct: 188 FGIQFRLNFYDAEDLKTIILRAASLLGIEIVEEASLELARRARGTPRIANRLLKRCRDFA 247

Query: 223 ALSRGMGITRSLAAEVLKETQ 243
            +     IT  L    L+  +
Sbjct: 248 DMETSGVITLPLVERSLERMR 268


>gi|121702517|ref|XP_001269523.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus
           clavatus NRRL 1]
 gi|119397666|gb|EAW08097.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus
           clavatus NRRL 1]
          Length = 466

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 39/167 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P   ++  GP G+GK+ LA   + ++ +T        L  + I     ++          
Sbjct: 246 PKGALM-YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEK 304

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N        D   ++ A       
Sbjct: 305 APSIIFIDELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRIDVL 364

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++  LP+++    ++      R++ +D  +
Sbjct: 365 DPAL--LRSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVDDTV 405


>gi|90076686|dbj|BAE88023.1| unnamed protein product [Macaca fascicularis]
          Length = 227

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 5   PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 56


>gi|120404241|ref|YP_954070.1| IstB ATP binding domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957059|gb|ABM14064.1| IstB domain protein ATP-binding protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 265

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 24/122 (19%)

Query: 67  VILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL------LEDI 116
           V+L+G SG+GKS L         ++ R  R+   A+ ++ ++    + VL         +
Sbjct: 115 VVLLGDSGTGKSHLLIGLGLAACEQGRRVRYVTTAQLVNELVEAADERVLSRVVARYGRL 174

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           DLL  ++             LF II +  +  +S+ +        WG   PD   RL AA
Sbjct: 175 DLLCLDELGYVQIDPRGAELLFQII-TEREERASVAIATNLPFSEWGTVFPD--PRLVAA 231

Query: 166 TV 167
            V
Sbjct: 232 IV 233


>gi|85714528|ref|ZP_01045515.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85714796|ref|ZP_01045782.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85715061|ref|ZP_01046045.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85715151|ref|ZP_01046135.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85715330|ref|ZP_01046312.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85715841|ref|ZP_01046819.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85716135|ref|ZP_01047110.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85716701|ref|ZP_01047669.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85717527|ref|ZP_01048472.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85717595|ref|ZP_01048537.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695600|gb|EAQ33516.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695644|gb|EAQ33557.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85696419|gb|EAQ34309.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85696968|gb|EAQ34851.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85697248|gb|EAQ35128.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85697751|gb|EAQ35626.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85697976|gb|EAQ35849.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85698066|gb|EAQ35939.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85698282|gb|EAQ36153.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85698413|gb|EAQ36283.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 287

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 98  QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206


>gi|310822364|ref|YP_003954722.1| hypothetical protein STAUR_5123 [Stigmatella aurantiaca DW4/3-1]
 gi|309395436|gb|ADO72895.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 444

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 35  CLGISRDDLLVH-SAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
              +SR+DLL+  S +     L+D        SR + L GP G+GK+ LA   S      
Sbjct: 140 NPVVSREDLLMGLSHLTVTEELLDKLGPAVNSSRSLFLYGPPGNGKTSLAEAISRMFGGE 199

Query: 92  RFSNIAKSLDSILI 105
            F      +D+ +I
Sbjct: 200 AFVPYCLEIDNQII 213


>gi|258566251|ref|XP_002583870.1| hypothetical protein UREG_06837 [Uncinocarpus reesii 1704]
 gi|237907571|gb|EEP81972.1| hypothetical protein UREG_06837 [Uncinocarpus reesii 1704]
          Length = 361

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 163 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 213 -KQLF---NMARENKPAIIF 228


>gi|227543541|ref|ZP_03973590.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           CF48-3A]
 gi|300908249|ref|ZP_07125715.1| replication-associated recombination protein A [Lactobacillus
           reuteri SD2112]
 gi|227186468|gb|EEI66539.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
           CF48-3A]
 gi|300894676|gb|EFK88032.1| replication-associated recombination protein A [Lactobacillus
           reuteri SD2112]
          Length = 434

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 20/137 (14%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   K    + +    +   + I   +        +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        +L+ A T      +  P + SR +   V  +S   D
Sbjct: 102 RLDKVKQDFLLPHLEN-----GRIILIGATTENPYISIN-PAIRSRTQIFPVYSLST--D 153

Query: 176 DFLEKVIVKMF-ADRQI 191
           +    +   +   +R +
Sbjct: 154 EMKTAIQRALVDKERGL 170


>gi|221119825|ref|XP_002168341.1| PREDICTED: similar to spastin [Hydra magnipapillata]
          Length = 475

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S++T F+  A +L S
Sbjct: 109 PARGLLLFGPPGNGKTLLAKAVATQSKATFFNISAATLTS 148


>gi|167382107|ref|XP_001735975.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165901776|gb|EDR27788.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 622

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 40/167 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R ++L GP G GK+ LA   + +         A  L                 S    
Sbjct: 74  PPRGILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATELVGGMSGESESKIRDLFQSASQR 133

Query: 107 TRKPVLLEDIDLL------DFND------TQLFHIINSIHQYDSSLLMTART-FPVSWGV 153
               + +++ID +         +       QL   ++ + + D  +++   T  P S   
Sbjct: 134 APALLFIDEIDAITPKRDNAQREMERRIVAQLLSSLDKLSEADKPVIVIGATNRPDSLD- 192

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             P L    +A      + + +P +   ++++ KM  +  + ID  +
Sbjct: 193 --PALR---RAGRFDREIAMGIPSEAQRKQILDKMMVN--LKIDSAV 232


>gi|153814722|ref|ZP_01967390.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756]
 gi|317500253|ref|ZP_07958482.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087513|ref|ZP_08336447.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847753|gb|EDK24671.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756]
 gi|316898349|gb|EFV20391.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406265|gb|EGG85782.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 645

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 204 ALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGMGASKVRDLFKQANEKAPCI 263

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++        +++ A   P +     
Sbjct: 264 VFIDEIDTIGKKRDSHGMAGNDEREQTLNQLLTEMDGFDASKGVVILAATNRPDTLDPAL 323

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 324 LRPGRFDRRIPVELPDLKGR 343


>gi|170726827|ref|YP_001760853.1| recombination factor protein RarA [Shewanella woodyi ATCC 51908]
 gi|169812174|gb|ACA86758.1| AAA ATPase central domain protein [Shewanella woodyi ATCC 51908]
          Length = 443

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 66/175 (37%), Gaps = 30/175 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++  GP G+GK+ LA + ++ + +   R S +   +  I         +E    +     
Sbjct: 52  MMFWGPPGTGKTTLAELVANYANAHVERISAVTSGVKEIRT------AIEHAKNVAESRG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + + + A T   S+ +    L SR +   + K
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSRARVYLIKK 164

Query: 170 ISLPDDDFL---EKVI--VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           ++  D+  L   + ++   +    R++ I   +A  +    +     A  L++ M
Sbjct: 165 LTN-DEIVLIVNQALLDVERGLGKRKLTIPDAVANKLANVCDGDARKALNLIELM 218


>gi|116333872|ref|YP_795399.1| recombination factor protein RarA [Lactobacillus brevis ATCC 367]
 gi|116099219|gb|ABJ64368.1| Recombination protein MgsA [Lactobacillus brevis ATCC 367]
          Length = 425

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 20/133 (15%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   +    + +    S   + I   +        +LL++I 
Sbjct: 43  MILYGPPGTGKTSIASAIAGSTQYAFRKLNAATDSKKDLQIVAEEAKMSGTVILLLDEIH 102

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++     
Sbjct: 103 RLDKTKQDFLLPHL-----ESGRIVLIGATTENPYININ-PAIRSR---TQIFEVHPLTP 153

Query: 176 DFLEKVIVKMFAD 188
           D ++  + +   D
Sbjct: 154 DDIKIALHRALTD 166


>gi|147919399|ref|YP_686862.1| proteasome-activating nucleotidase [uncultured methanogenic
           archaeon RC-I]
 gi|121685313|sp|Q0W257|PAN_UNCMA RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|110622258|emb|CAJ37536.1| 26s proteasome, regulatory subunit (proteasome-activating
           nucleotidase) [uncultured methanogenic archaeon RC-I]
          Length = 417

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++++++T    I   L    I     ++ E
Sbjct: 192 PPKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRE 243


>gi|49175787|gb|AAT52191.1| 26S proteasome ATPase subunit [Pisum sativum]
          Length = 211

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 40  PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 98

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 99  KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 158

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 159 DPALLRPGRLDRKVEFGLPDLESR 182


>gi|330932516|ref|XP_003303807.1| hypothetical protein PTT_16168 [Pyrenophora teres f. teres 0-1]
 gi|311319950|gb|EFQ88096.1| hypothetical protein PTT_16168 [Pyrenophora teres f. teres 0-1]
          Length = 430

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 9/69 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR---------KPVLL 113
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S L+              + +
Sbjct: 167 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKLVKQLFGMARENKPSIIFI 226

Query: 114 EDIDLLDFN 122
           ++ID L   
Sbjct: 227 DEIDALCGP 235


>gi|260809218|ref|XP_002599403.1| hypothetical protein BRAFLDRAFT_242774 [Branchiostoma floridae]
 gi|229284681|gb|EEN55415.1| hypothetical protein BRAFLDRAFT_242774 [Branchiostoma floridae]
          Length = 396

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 16/92 (17%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDS---WP----------SWPSRVVILVGPSGSGKSCL 80
               +S DD+   + +E A   I     WP            P + ++L GP G+GK+ +
Sbjct: 115 HGPPVSWDDI---AGLEFAKATIKEIVIWPMLRPDIFKGLRGPPKGLLLFGPPGTGKTLI 171

Query: 81  ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
               + +S +T FS  A SL S  +   + ++
Sbjct: 172 GKCIASQSGATFFSISASSLTSKWVGEGEKLV 203


>gi|212543135|ref|XP_002151722.1| vacuolar sorting ATPase Vps4, putative [Penicillium marneffei ATCC
           18224]
 gi|210066629|gb|EEA20722.1| vacuolar sorting ATPase Vps4, putative [Penicillium marneffei ATCC
           18224]
          Length = 433

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 163 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 213 -KQLF---NMARENKPAIIF 228


>gi|147919922|ref|YP_686325.1| replication factor C, large subunit [uncultured methanogenic
           archaeon RC-I]
 gi|121687915|sp|Q0W3P4|RFCL_UNCMA RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|110621721|emb|CAJ36999.1| replication factor C, large subunit [uncultured methanogenic
           archaeon RC-I]
          Length = 553

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 42/212 (19%)

Query: 48  AIEQAVRLIDSWPS--WPSRV-VILVGPSGSGKSCLANIWSDKSR--------------- 89
             + AV+ +  W       +  VIL G  G GK+  A   +                   
Sbjct: 24  GNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALAHDMGWDYIELNASDVRTKD 83

Query: 90  --STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-----DTQLFHIINSIHQYDSSLLM 142
             +      A +        R+ V+L++ D L  N     +     IIN I      +++
Sbjct: 84  AINRIAGPAAMAGTFEGTGGRRLVILDEADNLHGNYDRGGEAA---IINVIRNASQPVIL 140

Query: 143 TA-RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
            A   + +S  +    L  + +A     +         KV+ K+ A+  +  D +    I
Sbjct: 141 IANDMYAMSKPLRESALQIQFRAILSTSV--------AKVLRKVCANEGLKCDPEALMKI 192

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
            +R           ++ +   A      +T +
Sbjct: 193 AERT----NDLRSAINDL-QAAAQGSGQVTVA 219


>gi|237742214|ref|ZP_04572695.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 4_1_13]
 gi|256845487|ref|ZP_05550945.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_36A2]
 gi|294785207|ref|ZP_06750495.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_27]
 gi|229429862|gb|EEO40074.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 4_1_13]
 gi|256719046|gb|EEU32601.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_36A2]
 gi|294486921|gb|EFG34283.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_27]
          Length = 338

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + +++ ++         L+           LE+ D+L  ++   
Sbjct: 55  ILLYGPPGLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +NS  + 
Sbjct: 113 -HRLNSTVEE 121


>gi|255563409|ref|XP_002522707.1| Protein cdcH, putative [Ricinus communis]
 gi|223538057|gb|EEF39669.1| Protein cdcH, putative [Ricinus communis]
          Length = 828

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 25/101 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR--------STRFSNIAKSLDSILID-------- 106
           P   ++L GP G GK+ LA+  ++++         +   S ++ + +  + +        
Sbjct: 286 PIGGILLHGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRELFSKAYRT 345

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144
               V +++ID +           N   + +  +   L+T 
Sbjct: 346 APSIVFIDEIDAIASKRE------NLQREMERRIVTQLLTC 380



 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 21/46 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ +A   ++++ +         L +  +   +  +
Sbjct: 595 ILLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAV 640


>gi|254302939|ref|ZP_04970297.1| crossover junction DNA helicase RuvB [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323131|gb|EDK88381.1| crossover junction DNA helicase RuvB [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 338

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + +++ ++         L+           LE+ D+L  ++   
Sbjct: 55  ILLYGPPGLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +NS  + 
Sbjct: 113 -HRLNSTVEE 121


>gi|150401457|ref|YP_001325223.1| proteasome-activating nucleotidase [Methanococcus aeolicus
           Nankai-3]
 gi|150014160|gb|ABR56611.1| 26S proteasome subunit P45 family [Methanococcus aeolicus Nankai-3]
          Length = 408

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++++ ++    +   L    I     ++ +
Sbjct: 182 PPKGVLLYGPPGTGKTLLAKAVANETNASFIKLVGSELVKKFIGEGAKLVKD 233


>gi|21113093|gb|AAM41265.1| ATPase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66573854|gb|AAY49264.1| ATPase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 428

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 67/200 (33%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125
           +IL GP G GK+ LA + +  + +  F  I+  L  +    +  VL E          T 
Sbjct: 34  MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLPDVRQ--VLAEAAQRFASGRRTV 90

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 91  LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 147

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     A+R +      + +     I    +  +  A  L++    LA 
Sbjct: 148 PQDIVEALQRAL---HDAERGLGQETIQVSEASLLEIASAADGDVRRALTLLEIAAELAT 204

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 205 GEGGEITPRTLLQVLADRTR 224


>gi|19704552|ref|NP_604114.1| Holliday junction DNA helicase RuvB [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296328431|ref|ZP_06870957.1| crossover junction ATP-dependent DNA helicase RuvB [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|22001977|sp|Q8RE97|RUVB_FUSNN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|19714838|gb|AAL95413.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296154505|gb|EFG95297.1| crossover junction ATP-dependent DNA helicase RuvB [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 332

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + +++ ++         L+           LE+ D+L  ++   
Sbjct: 55  ILLYGPPGLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +NS  + 
Sbjct: 113 -HRLNSTVEE 121


>gi|34763187|ref|ZP_00144153.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887156|gb|EAA24261.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 338

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + +++ ++         L+           LE+ D+L  ++   
Sbjct: 55  ILLYGPPGLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +NS  + 
Sbjct: 113 -HRLNSTVEE 121


>gi|321263001|ref|XP_003196219.1| cell division cycle protein 48 [Cryptococcus gattii WM276]
 gi|317462694|gb|ADV24432.1| Cell division cycle protein 48, putative [Cryptococcus gattii
           WM276]
          Length = 810

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 239 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 298

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ +    + ++M A   P S    
Sbjct: 299 SPSIIFIDELDSIAPKREKANGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    V I +PD     +++      + + +   +
Sbjct: 359 LR----RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLSDDV 396



 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G+GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 512 PSKGVLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 568


>gi|282899399|ref|ZP_06307366.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195663|gb|EFA70593.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 615

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R ++L GP G+GK+ LA   + ++R+   +     L +  +   +  + E
Sbjct: 396 RGILLWGPPGTGKTLLAKAVASQARANFIAVNGPELLTRWVGASEQAVRE 445


>gi|193629665|ref|XP_001951431.1| PREDICTED: 26S protease regulatory subunit 10B-like [Acyrthosiphon
           pisum]
          Length = 395

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 172 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 223

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 224 ------MFNYARDHQ 232


>gi|158288070|ref|XP_309949.3| AGAP011557-PA [Anopheles gambiae str. PEST]
 gi|157019297|gb|EAA05708.3| AGAP011557-PA [Anopheles gambiae str. PEST]
          Length = 431

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++ +
Sbjct: 211 PPKGVLMYGPPGTGKTLLARACAAQTKATFIKLAGPQLVQMFIGDGAKLVRD 262


>gi|92115946|ref|YP_575675.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
 gi|92119333|ref|YP_579062.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
 gi|91798840|gb|ABE61215.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
 gi|91802227|gb|ABE64602.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
          Length = 287

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R  +LVG +G+GK+ LA   +        + R     ++   L+    + R+  + E +
Sbjct: 98  QRNAVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRIAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 206


>gi|67527991|ref|XP_661840.1| hypothetical protein AN4236.2 [Aspergillus nidulans FGSC A4]
 gi|40740145|gb|EAA59335.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
 gi|259481153|tpe|CBF74421.1| TPA: hypothetical protein similar to TAT-binding protein 1 (Broad)
           [Aspergillus nidulans FGSC A4]
          Length = 465

 Score = 41.7 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 251 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 310

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 311 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 368

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++    ++      R++ ++  +
Sbjct: 369 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMTVEDSV 404


>gi|332662821|ref|YP_004445609.1| AAA ATPase central domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331635|gb|AEE48736.1| AAA ATPase central domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 425

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 23/138 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------ 110
             +IL GP G GK+ LANI + +        S IA  +  +    +K             
Sbjct: 39  PSIILWGPPGVGKTTLANILASELGRPFYSLSAIAAGVKDVRDTIQKAEQQRFFNRPNPI 98

Query: 111 VLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           + +++I     +    L        +     LM A T   S+ V +P L SR     V  
Sbjct: 99  LFIDEIHRFSKSQQDALL----GAVEKGVITLMGATTENPSFEV-IPALLSR---CQVYV 150

Query: 170 ISLPDDDFLEKVIVKMFA 187
           + L + D L ++I +   
Sbjct: 151 LKLLETDQLLQLIQEALQ 168


>gi|269114890|ref|YP_003302653.1| ATPase, AAA family [Mycoplasma hominis]
 gi|268322515|emb|CAX37250.1| ATPase, AAA family [Mycoplasma hominis ATCC 23114]
          Length = 404

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 71/182 (39%), Gaps = 26/182 (14%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLL 119
            R  I  G  G+GK+ ++ I ++  K     F+   ++ + ++  +   K +++++I  L
Sbjct: 36  YRSFIFYGKPGTGKTTISYILANALKVNYEYFNAAIENKEDLVHKLKLNKILIIDEIHRL 95

Query: 120 DFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWG-VCL-PDLCSRLKAATVVKISLPDD 175
           + +  D  L ++ N         L+T            L P L SR    ++++I+ P  
Sbjct: 96  NKDKQDILLPYLEND--------LITIYATTTENPYFKLNPALRSR---CSIIEITKPTI 144

Query: 176 DFLEKVIVKMFADR-QIFIDKKLAAYIVQRMERSLVFAEKLVDKM-----DNL-ALSRGM 228
             L   +         + ++K +A Y+  +       A   +D +     D   +L    
Sbjct: 145 QDLSSCLKNACLKTFGVDLNKDIADYLALQANGDFRSALNNLDLIMLIFKDQEFSLEAIK 204

Query: 229 GI 230
            I
Sbjct: 205 KI 206


>gi|225718662|gb|ACO15177.1| 26S protease regulatory subunit S10B [Caligus clemensi]
          Length = 392

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 220

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 221 ------MFNYARDHQ 229


>gi|195059036|ref|XP_001995550.1| GH17814 [Drosophila grimshawi]
 gi|193896336|gb|EDV95202.1| GH17814 [Drosophila grimshawi]
          Length = 397

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|114678323|ref|XP_001172040.1| PREDICTED: RuvB-like 2 isoform 3 [Pan troglodytes]
          Length = 422

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 46/132 (34%), Gaps = 22/132 (16%)

Query: 116 IDLLDFNDTQLFHIINSIHQYD-SSLLM------------TARTFPVSWGVCLPDLCSRL 162
           ID +   D + F  +N   + D + +L+            T+   P    + L D   RL
Sbjct: 298 IDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD---RL 354

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
               +V  +   +   ++++     +  + + +     ++ R+          +  +   
Sbjct: 355 ---LIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYT-VLTRIGLE-TSLRYAIQLITAA 409

Query: 223 ALS-RGMGITRS 233
           +L  R   ++R 
Sbjct: 410 SLVCRKRKVSRP 421


>gi|118378556|ref|XP_001022453.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89304220|gb|EAS02208.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 488

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 21/67 (31%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
           L   FP                     +I  W     R ++L GP G+GK+ LA   + +
Sbjct: 204 LPIRFPHIFQ----------------GMIKPW-----RGILLYGPPGTGKTFLAKACATE 242

Query: 88  SRSTRFS 94
             +T FS
Sbjct: 243 CDATFFS 249


>gi|46201290|ref|ZP_00208042.1| COG0465: ATP-dependent Zn proteases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 639

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 47/204 (23%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111
           +LVGP G+GK+ LA   + ++    F+        + +                     +
Sbjct: 192 LLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCII 251

Query: 112 LLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLP 156
            +++ID +            D  +  L  +   ++     +  +L+ A   P      L 
Sbjct: 252 FIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPAL- 310

Query: 157 DLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
                L+       V +  PD    EK+I      R++ +   + A I+ R       A 
Sbjct: 311 -----LRPGRFDRQVTVPNPDILGREKIIKVHM--RKVPLSPDVDARIIARGTPGFSGA- 362

Query: 214 KLVDKMDNLAL----SRGMGITRS 233
            L + ++  AL    +    +T +
Sbjct: 363 DLANLVNEAALLAARAGKRVVTMA 386


>gi|67525207|ref|XP_660665.1| hypothetical protein AN3061.2 [Aspergillus nidulans FGSC A4]
 gi|40744456|gb|EAA63632.1| hypothetical protein AN3061.2 [Aspergillus nidulans FGSC A4]
 gi|259485992|tpe|CBF83480.1| TPA: vacuolar sorting ATPase Vps4, putative (AFU_orthologue;
           AFUA_3G09360) [Aspergillus nidulans FGSC A4]
          Length = 434

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIIF 229


>gi|254580125|ref|XP_002496048.1| ZYRO0C09262p [Zygosaccharomyces rouxii]
 gi|238938939|emb|CAR27115.1| ZYRO0C09262p [Zygosaccharomyces rouxii]
          Length = 830

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKSRSNVVVIAATNRPNSIDPA 366

Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
                       + +PD   RL+   V++I      L DD  LE +     A+   ++  
Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEAL----AAETHGYVGA 419

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220
            +A+        S    +++ +KMD
Sbjct: 420 DVASLC------SEAAMQQIREKMD 438



 Score = 37.1 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PS+ V+  GP G+GK+ LA   + +  +                   SNI    D     
Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579

Query: 107 TRKPVLLEDIDLLD 120
               V L+++D + 
Sbjct: 580 APTVVFLDELDSIA 593


>gi|271970341|ref|YP_003344537.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
 gi|270513516|gb|ACZ91794.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021]
          Length = 656

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 45/211 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 200 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 259

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 260 IFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 319

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD +  + ++      R     + +    I +R       
Sbjct: 320 ------LRPGRFDRQVTVDRPDLEGRKGILKVH--GRGKPFAEGVELDIIARRTP-GFTG 370

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           A  L + ++  AL       + +  E+L+E+
Sbjct: 371 A-DLANVINEAALLTARADQKLITMEMLEES 400


>gi|207343269|gb|EDZ70783.1| YLL034Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 693

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P  V+ L GP G GK+ LA   +++SR+   S
Sbjct: 423 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 453


>gi|254432154|ref|ZP_05045857.1| ATPase [Cyanobium sp. PCC 7001]
 gi|197626607|gb|EDY39166.1| ATPase [Cyanobium sp. PCC 7001]
          Length = 753

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 24/163 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA I +  +R+   S  A       + T        ++      T L
Sbjct: 56  LILHGPPGTGKTTLARIIAGTTRAHFTSLNAVLAGVKDLRTAVDEARGRLEQHGLR-TLL 114

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N+          +  +  L+ A T    + V    L SR   + + ++   +
Sbjct: 115 FIDEVHRFNAAQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLQPLE 170

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
              L +++ +        +  + A Y   R++ +   A+ LVD
Sbjct: 171 PIHLHQLLQR-------ALSDEAAGYGRIRVQLTPEAADHLVD 206


>gi|194757830|ref|XP_001961165.1| GF11135 [Drosophila ananassae]
 gi|190622463|gb|EDV37987.1| GF11135 [Drosophila ananassae]
          Length = 801

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199
                       + +PD   RL+   V++I   +    E V + ++ A+    +   LA+
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410

Query: 200 YIVQRMERSLVFAEKLVDKMD 220
                   S    +++ +KMD
Sbjct: 411 LC------SEAALQQIREKMD 425



 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|145252200|ref|XP_001397613.1| vacuolar protein sorting-associated protein 4 [Aspergillus niger
           CBS 513.88]
 gi|134083158|emb|CAK48610.1| unnamed protein product [Aspergillus niger]
          Length = 434

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIIF 229


>gi|47220389|emb|CAF98488.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 499

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSD---KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
              IL GP G GK+ LA+I +    +  + RF  ++ +  S+          ++   L  
Sbjct: 196 PSFILWGPPGCGKTTLAHIIAGKCKRKGTARFVTLSATSASVSDVREVIKQAQNELRLCK 255

Query: 122 NDTQLF----HIINSIHQY 136
             T LF    H  N   Q 
Sbjct: 256 RKTVLFIDEIHRFNKSQQD 274


>gi|70999932|ref|XP_754683.1| vacuolar sorting ATPase Vps4 [Aspergillus fumigatus Af293]
 gi|66852320|gb|EAL92645.1| vacuolar sorting ATPase Vps4, putative [Aspergillus fumigatus
           Af293]
 gi|159127693|gb|EDP52808.1| vacuolar sorting ATPase Vps4, putative [Aspergillus fumigatus
           A1163]
          Length = 435

 Score = 41.7 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 165 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 214

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 215 -KQLF---NMARENKPAIIF 230


>gi|302308248|ref|NP_985111.2| AER254Wp [Ashbya gossypii ATCC 10895]
 gi|299789363|gb|AAS52935.2| AER254Wp [Ashbya gossypii ATCC 10895]
          Length = 460

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            GP G+GK+ LA   + ++ +T     A  L  + I     ++ +
Sbjct: 247 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGAKLVRD 291


>gi|295689102|ref|YP_003592795.1| hypothetical protein Cseg_1694 [Caulobacter segnis ATCC 21756]
 gi|295431005|gb|ADG10177.1| conserved hypothetical protein [Caulobacter segnis ATCC 21756]
          Length = 1512

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 3/98 (3%)

Query: 49  IEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
            E A  L    W    +R +++VG +GSGKS L     D +       +      +    
Sbjct: 341 NEVARELAAAHWDHTQTRALLVVGAAGSGKSHLLADVCDLAIDNLAPAVMVLGGKLPDAE 400

Query: 108 RKPVLLEDIDLLDFND-TQLFHIINSI-HQYDSSLLMT 143
               +L+D+DL            +N+         L+ 
Sbjct: 401 PWAEILKDLDLPRGLQVQAFLGALNAAGQAAGVRALLA 438


>gi|156840873|ref|XP_001643814.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114440|gb|EDO15956.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 839

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+ V+ L GP G GK+ LA   +++SR+   S
Sbjct: 575 PAGVL-LWGPPGCGKTLLAKAVANESRANFIS 605


>gi|151945344|gb|EDN63587.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae
           YJM789]
          Length = 437

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265


>gi|91774045|ref|YP_566737.1| proteasome-activating nucleotidase [Methanococcoides burtonii DSM
           6242]
 gi|91713060|gb|ABE52987.1| Proteasome-activating nucleotidase [Methanococcoides burtonii DSM
           6242]
          Length = 426

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++ +T    +   L    I     ++ +
Sbjct: 202 PPKGVLLFGPPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGAKLVRD 253


>gi|50286221|ref|XP_445539.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524844|emb|CAG58450.1| unnamed protein product [Candida glabrata]
          Length = 834

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P  V+ L GP G GK+ LA   +++SR+   S
Sbjct: 566 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 596


>gi|297537202|ref|YP_003672971.1| IstB domain-containing protein ATP-binding protein [Methylotenera
           sp. 301]
 gi|297538575|ref|YP_003674344.1| IstB domain-containing protein ATP-binding protein [Methylotenera
           sp. 301]
 gi|297539252|ref|YP_003675021.1| IstB domain-containing protein ATP-binding protein [Methylotenera
           sp. 301]
 gi|297256549|gb|ADI28394.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301]
 gi|297257922|gb|ADI29767.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301]
 gi|297258599|gb|ADI30444.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301]
          Length = 257

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 24/144 (16%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88
           FP    ++  D    SA E  ++ +     +  ++ V+L+G  G+GK+ LA     ++  
Sbjct: 65  FPVYRDLTGFDFSQSSANEPLIKQLHRCAFTEDAQNVVLIGGPGTGKTHLATAIGVQAIE 124

Query: 89  ----RSTRFSNIAKSLDSILIDTRK-----PVLLEDIDLLDFND-----------TQLFH 128
               R   FS I       L             L  +DL+  ++             LFH
Sbjct: 125 HHLKRVRFFSTIELVNTLELEKAAGKQGQLAFRLMYVDLVILDELGYLPFSQAGGALLFH 184

Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152
           +++ ++++ +S+++T       WG
Sbjct: 185 LLSKLYEH-TSVIITTNLGFAEWG 207


>gi|296413660|ref|XP_002836527.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630354|emb|CAZ80718.1| unnamed protein product [Tuber melanosporum]
          Length = 560

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   +++S +   +
Sbjct: 351 PSGVL-LWGPPGCGKTLLAKAIANESGANFIN 381


>gi|255534679|ref|YP_003095050.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10]
 gi|255340875|gb|ACU06988.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10]
          Length = 442

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 36/204 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111
             +I  GP G+GK+ +A I S++S    F               I ++    L   + P+
Sbjct: 59  NSLIFWGPPGTGKTTIAEIISEQSGRKFFKLSAVSSGVKDVREVIEEAKKQNLFSGKSPI 118

Query: 112 L-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR-----LKA 164
           L +++I   + +    L H      +    +L+ A T   S+ V    L SR     LK+
Sbjct: 119 LFIDEIHRFNKSQQDSLLH----AVEKGWIVLIGATTENPSFEVVSA-LLSRSQVYVLKS 173

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK----MD 220
            +  K+    +  L+        + +I   +    Y       S   A KL++     ++
Sbjct: 174 LSYEKLEELAELSLKNYNASHGTEFRIKDKEAFIQY-------SGGDARKLINSVENVLN 226

Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244
           N   S    I+ +   EVL+ET  
Sbjct: 227 NFKNSDKKEISNADVLEVLQETMA 250


>gi|313125445|ref|YP_004035709.1| reca-superfamily ATPase possibly involved in signal transduction
           [Halogeometricum borinquense DSM 11551]
 gi|312291810|gb|ADQ66270.1| RecA-superfamily ATPase possibly involved in signal transduction
           [Halogeometricum borinquense DSM 11551]
          Length = 234

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----DIDL 118
           P R+ +L GP GSGK+     ++ +  +    N    +   + ++R+ ++ +    D   
Sbjct: 20  PGRLYVLSGPPGSGKT----TFTTQYVAEGLRNGENCMYITMHESREELVNDMSSYDFGF 75

Query: 119 LDFNDTQLFHIINSIHQYDSSLL 141
               ++  F  IN   Q    +L
Sbjct: 76  ETLTESDQFRFINLASQKGKHVL 98


>gi|242011782|ref|XP_002426625.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
 gi|212510778|gb|EEB13887.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
          Length = 720

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D I +    
Sbjct: 324 VLLVGPPGTGKTLLARAIAGEANVPFFHASGSEFDEIFVGEGA 366


>gi|145550325|ref|XP_001460841.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428672|emb|CAK93444.1| unnamed protein product [Paramecium tetraurelia]
          Length = 668

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   + ++    F       D + +      + E
Sbjct: 274 ILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVRE 321


>gi|145546005|ref|XP_001458686.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426507|emb|CAK91289.1| unnamed protein product [Paramecium tetraurelia]
          Length = 647

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   + ++    F       D + +      + E
Sbjct: 253 ILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVRE 300


>gi|145543416|ref|XP_001457394.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425210|emb|CAK89997.1| unnamed protein product [Paramecium tetraurelia]
          Length = 673

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   + ++    F       D + +      + E
Sbjct: 279 ILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVRE 326


>gi|55378540|ref|YP_136390.1| holliday junction DNA helicase [Haloarcula marismortui ATCC 43049]
 gi|55231265|gb|AAV46684.1| holliday junction DNA helicase [Haloarcula marismortui ATCC 43049]
          Length = 850

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 38/154 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           ++L GP G GK+ LA   + +   +                   N+A+  +    +    
Sbjct: 625 LLLYGPPGCGKTHLAGALAGELGHSFVEISPADVTSKWMGEPARNVAEVFEVARANAPCV 684

Query: 111 VLLEDIDLLDF--------NDTQLFHIINSIH------QYDSSLLMTARTFPVSWGVCLP 156
           + +++ID +          ++ QL   +N +         D  +++ A  F       L 
Sbjct: 685 LFIDEIDGIAGSRRGSMNTSEQQL---VNQLLTELEGAAADDIVVVAATNFVEDIDTALR 741

Query: 157 DLCS-RLKAATVVKISLPDDDFLEKVIVKMFADR 189
              S R      V++  PD     +++     DR
Sbjct: 742 --RSGRFDE--RVEVPPPDAKARRQILEIHLQDR 771


>gi|84996219|ref|XP_952831.1| 26S proteasome ATPase subunit [Theileria annulata strain Ankara]
 gi|65303829|emb|CAI76206.1| 26S proteasome ATPase subunit, putative [Theileria annulata]
          Length = 448

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++         +A ++    I     ++ E
Sbjct: 225 PPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIRE 276


>gi|71028288|ref|XP_763787.1| 26S proteasome regulatory subunit [Theileria parva strain Muguga]
 gi|68350741|gb|EAN31504.1| 26S proteasome regulatory subunit, putative [Theileria parva]
          Length = 415

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++         +A ++    I     ++ E
Sbjct: 192 PPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIRE 243


>gi|327334838|gb|EGE76549.1| putative cell division protein [Propionibacterium acnes HL097PA1]
          Length = 711

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  +  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDMASIARR 367


>gi|294101443|ref|YP_003553301.1| AAA ATPase central domain protein [Aminobacterium colombiense DSM
           12261]
 gi|293616423|gb|ADE56577.1| AAA ATPase central domain protein [Aminobacterium colombiense DSM
           12261]
          Length = 424

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 24/155 (15%)

Query: 68  ILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           +L GP G GK+ L  + +             S     L  ++ + +   +L     + F 
Sbjct: 49  VLYGPPGVGKTTLVRLMAMVTERSLLEINAVSAKVSELRDLVEEAKNLKILSGSAAIAFV 108

Query: 123 DTQLFHIINSIHQY-------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           D  ++H  N   Q           +++   T    W      L SRL    V ++    +
Sbjct: 109 DE-IYH-FNKSQQNALLPSVEKGDIILVGTTTENPWFEINKTLLSRL---VVFQLKPLAE 163

Query: 176 DFLEKVIVKMFADR-------QIFIDKKLAAYIVQ 203
           + L +++ K   D        ++ + + +   + +
Sbjct: 164 EDLVQILYKALKDEEKGLGALKLAVSEDVITVLAK 198


>gi|226944894|ref|YP_002799967.1| recombination factor protein RarA [Azotobacter vinelandii DJ]
 gi|226719821|gb|ACO78992.1| recombination factor protein RarA [Azotobacter vinelandii DJ]
          Length = 441

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 30/187 (16%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  + +  F  I+  L  +    +   +    
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVTDAH-FETISAVLAGVKEIRQAVEIARQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AAQHGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L ++  +   +      R + + +     ++   +       +L+
Sbjct: 155 --ARVYVLKSLDEAALRRLAERALGEERGLGGRHLSLPEDSLRMLLAAAD---GDGRRLL 209

Query: 217 DKMDNLA 223
           + ++N A
Sbjct: 210 NLLENAA 216


>gi|222637668|gb|EEE67800.1| hypothetical protein OsJ_25538 [Oryza sativa Japonica Group]
          Length = 784

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 45/164 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P + ++L GP G+GK+ LA   + ++ +   +    S+ S                    
Sbjct: 516 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIASKWFGEGEKYVKAVFSLASKI 575

Query: 107 TRKPVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144
               + ++++D +            +  + N              +  L++ A       
Sbjct: 576 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 635

Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181
                R  P    V LPD  +R  + +  + K  L DD  LE +
Sbjct: 636 DEAVVRRLPRRLMVNLPDASNRKKILSVILAKEDLADDVDLEAL 679


>gi|218200238|gb|EEC82665.1| hypothetical protein OsI_27291 [Oryza sativa Indica Group]
          Length = 1081

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 45/164 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P + ++L GP G+GK+ LA   + ++ +   +    S+ S                    
Sbjct: 813 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIASKWFGEGEKYVKAVFSLASKI 872

Query: 107 TRKPVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144
               + ++++D +            +  + N              +  L++ A       
Sbjct: 873 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 932

Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181
                R  P    V LPD  +R  + +  + K  L DD  LE +
Sbjct: 933 DEAVVRRLPRRLMVNLPDASNRKKILSVILAKEDLADDVDLEAL 976


>gi|195432950|ref|XP_002064478.1| GK23803 [Drosophila willistoni]
 gi|194160563|gb|EDW75464.1| GK23803 [Drosophila willistoni]
          Length = 397

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|115727595|ref|XP_783032.2| PREDICTED: similar to spastic paraplegia 4 (autosomal dominant;
           spastin) [Strongylocentrotus purpuratus]
 gi|115956139|ref|XP_001187782.1| PREDICTED: similar to spastic paraplegia 4 (autosomal dominant;
           spastin) [Strongylocentrotus purpuratus]
          Length = 505

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   +++S +T F+  A +L S  +   + ++
Sbjct: 317 PARGLLLFGPPGNGKTMLAKAVANESNATFFNISAATLTSKYVGEGEKLV 366


>gi|114620178|ref|XP_519765.2| PREDICTED: 26S protease regulatory subunit 10B-like [Pan
           troglodytes]
          Length = 389

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAIASQLDCNFLKVVSSSIVDKYIGESAHLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|21226350|ref|NP_632272.1| cell division cycle protein [Methanosarcina mazei Go1]
 gi|20904601|gb|AAM29944.1| Cell division cycle protein [Methanosarcina mazei Go1]
          Length = 764

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 17/83 (20%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGK 77
                 I  DD+     + +   L+     WP +               V+L GP G+GK
Sbjct: 480 LIEVPNIGWDDV---GGLGEVKELLKEAVEWPLKSPESYRNIGVEAPKGVLLYGPPGTGK 536

Query: 78  SCLANIWSDKSRSTRFSNIAKSL 100
           + LA   + +S +   +     L
Sbjct: 537 TLLAKAIAHESDANFITAKGSDL 559



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 28/117 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   +++S +   S                 I +  +    +    
Sbjct: 253 VLLHGPPGTGKTMLAKAVANESDAYFISINGPEIMSKYYGESERAIREIFEDAEKNAPAI 312

Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + L++ID +                 QL  +++ +    + +++ +   P +  + L
Sbjct: 313 IFLDEIDSIAPKRAEVTGEVERRVVAQLLSLMDGLKARKNVIVIGSTNRPEAIDIAL 369


>gi|115474007|ref|NP_001060602.1| Os07g0672500 [Oryza sativa Japonica Group]
 gi|33146850|dbj|BAC79845.1| putative MSP1(mitochondrial sorting of proteins) protein [Oryza
           sativa Japonica Group]
 gi|113612138|dbj|BAF22516.1| Os07g0672500 [Oryza sativa Japonica Group]
          Length = 1081

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 45/164 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P + ++L GP G+GK+ LA   + ++ +   +    S+ S                    
Sbjct: 813 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIASKWFGEGEKYVKAVFSLASKI 872

Query: 107 TRKPVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144
               + ++++D +            +  + N              +  L++ A       
Sbjct: 873 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 932

Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181
                R  P    V LPD  +R  + +  + K  L DD  LE +
Sbjct: 933 DEAVVRRLPRRLMVNLPDASNRKKILSVILAKEDLADDVDLEAL 976


>gi|159113196|ref|XP_001706825.1| Katanin [Giardia lamblia ATCC 50803]
 gi|157434925|gb|EDO79151.1| Katanin [Giardia lamblia ATCC 50803]
          Length = 509

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R V+L GP G+GK+ LA   + ++  T FS  A  ++S
Sbjct: 248 PWRGVLLFGPPGTGKTLLAKAIAMQAGFTFFSASASVIES 287


>gi|332299790|ref|YP_004441711.1| AAA ATPase central domain protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176853|gb|AEE12543.1| AAA ATPase central domain protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 439

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 37/186 (19%)

Query: 26  EQLFFSFPRCLGISRDDLLVH-----SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80
           EQ+  +         +   V       A      +++         +IL GP G GK+ L
Sbjct: 4   EQIPLAERMRPKTLEE--YVGQSHLVGANAPLRVMLER---GHIPSMILWGPPGVGKTTL 58

Query: 81  ANIWSD--KSRSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLLDFN 122
           A + S   + R    S +   +  +    ++                 + +++I     +
Sbjct: 59  ARLLSQMMQCRCYSLSAVGSGVADVRKTLQEAKEAQSGLFSQHQGRPILFIDEIHRFSKS 118

Query: 123 DT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
               L     +  +     L+ A T   S+ V  P L SR     V  +   +   L ++
Sbjct: 119 QQDSLL----AAVEQGVVTLIGATTENPSFQVIHP-LLSR---CQVFVLKPLEPSDLSQL 170

Query: 182 IVKMFA 187
           I ++FA
Sbjct: 171 IDRVFA 176


>gi|325958393|ref|YP_004289859.1| Replication factor C large subunit [Methanobacterium sp. AL-21]
 gi|325329825|gb|ADZ08887.1| Replication factor C large subunit [Methanobacterium sp. AL-21]
          Length = 491

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 81/223 (36%), Gaps = 40/223 (17%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSW-PSW----PSRVVILVGPSGSGKSCLANIWSDK-- 87
               S  +        +    I +W   W     S+ ++L+GP G+GK+ +A++ +++  
Sbjct: 4   TEKYSPKNFDEVLGNVKIKDEILNWTEDWLLGKTSQCILLIGPPGTGKTTMAHLAANEFS 63

Query: 88  -------SRSTRFSNIAKSLDS------ILIDTRKPVLLEDIDLLDFND-----TQLFHI 129
                  S    +  +  ++        +  D  K ++L+++D +  N+           
Sbjct: 64  EYIELNASDKRSYDILKNTIGESSLSKSLYGDGLKLIILDEVDGIHGNEDRGGTRA---- 119

Query: 130 INSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           IN I +     ++M A          L  L  +     + K+     + +  ++ K+   
Sbjct: 120 INQIVKDGKHPIIMMANDPYSK---RLQSLKPKCNTLIMRKVHT---NSIVSLLKKICVK 173

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
             +  ++ +   + +   RS       ++ ++ +A      IT
Sbjct: 174 EGVEFEEHVIRNLAK---RSNGDLRTAINDLEVIA-RGQERIT 212


>gi|330795954|ref|XP_003286035.1| 26S protease regulatory subunit S10B [Dictyostelium purpureum]
 gi|325084033|gb|EGC37471.1| 26S protease regulatory subunit S10B [Dictyostelium purpureum]
          Length = 393

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     V+ E
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIRE 221


>gi|323337945|gb|EGA79184.1| Sap1p [Saccharomyces cerevisiae Vin13]
          Length = 897

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S ST FS  A SL S  +   + ++
Sbjct: 637 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 686


>gi|322711614|gb|EFZ03187.1| 26S protease regulatory subunit 6A [Metarhizium anisopliae ARSEF
           23]
          Length = 458

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 245 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 304

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 305 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 362

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 363 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMKVDPGV 398


>gi|315586413|gb|ADU40794.1| crossover junction endodeoxyribonuclease ATPase [Helicobacter
           pylori 35A]
          Length = 391

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCAKALILLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|260593081|ref|ZP_05858539.1| ATPase, AAA family [Prevotella veroralis F0319]
 gi|260534967|gb|EEX17584.1| ATPase, AAA family [Prevotella veroralis F0319]
          Length = 400

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 28/184 (15%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-------- 103
           R+ID   S      IL GP G GK+ LA I + +  +     S +   +  +        
Sbjct: 31  RMID---SGHISSFILWGPPGVGKTTLAQIIAHQLETPFYTLSAVTSGVKDVREVIERAK 87

Query: 104 ---LIDTRKPVL-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                ++  P+L +++I     +    L        +     L+ A T   S+ V  P L
Sbjct: 88  SGRFFNSVSPILFIDEIHRFSKSQQDSLL----GAVERGVVTLIGATTENPSFEVIRP-L 142

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKL 215
            SR +   +  +    DD L  V   +  D   +++ I       +++           +
Sbjct: 143 LSRCQLYVLKSLEK--DDLLRLVQRAITEDTELKKLTIKLSETTALLRYSGGDARKLLNI 200

Query: 216 VDKM 219
           +D +
Sbjct: 201 IDLL 204


>gi|256271139|gb|EEU06232.1| Sap1p [Saccharomyces cerevisiae JAY291]
          Length = 897

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S ST FS  A SL S  +   + ++
Sbjct: 637 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 686


>gi|207345974|gb|EDZ72614.1| YER047Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 897

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S ST FS  A SL S  +   + ++
Sbjct: 637 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 686


>gi|151944758|gb|EDN63017.1| AAA ATPase [Saccharomyces cerevisiae YJM789]
 gi|190405609|gb|EDV08876.1| AAA ATPase [Saccharomyces cerevisiae RM11-1a]
          Length = 897

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S ST FS  A SL S  +   + ++
Sbjct: 637 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 686


>gi|94969641|ref|YP_591689.1| recombination factor protein RarA [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551691|gb|ABF41615.1| Recombination protein MgsA [Candidatus Koribacter versatilis
           Ellin345]
          Length = 447

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 34/201 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122
             +I  GP G GK+ LA I +  + +      A       I      ++ D + +     
Sbjct: 53  GSLIFWGPPGVGKTTLAKIIAAMTHADFIEFSAVLSGIKEIKQ----VMADAERVRQYGT 108

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T LF    H  N           +  +  L+ A T   S+ V    L SR   + V  +
Sbjct: 109 RTILFVDEIHRFNRAQQDAFLPHVERGNIKLIGATTENPSFEVNSA-LLSR---SRVYTL 164

Query: 171 SLPDDDFLEKVIVKMFAD--RQIF-IDKKLAAYIVQRM-------ERSLVFAEKLVDKMD 220
           +   ++ +  ++ +   D  R +  +        + R+        RS     ++  +  
Sbjct: 165 TPLTEEQIVGLLRRALTDTERGLAELHVTAEDIALARIAAYASGDARSGYNVLEVAAQ-- 222

Query: 221 NLALSRGMGITRSLAAEVLKE 241
               +    IT  + A+ L+ 
Sbjct: 223 AAGATSERIITEQIVADALQR 243


>gi|50290781|ref|XP_447823.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527134|emb|CAG60772.1| unnamed protein product [Candida glabrata]
          Length = 935

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S ST FS  A SL S  +   + ++
Sbjct: 684 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 733


>gi|6320887|ref|NP_010966.1| Sap1p [Saccharomyces cerevisiae S288c]
 gi|731461|sp|P39955|SAP1_YEAST RecName: Full=Protein SAP1; AltName: Full=SIN1-associated protein
 gi|603280|gb|AAB64582.1| Yer047cp [Saccharomyces cerevisiae]
 gi|285811674|tpg|DAA07702.1| TPA: Sap1p [Saccharomyces cerevisiae S288c]
          Length = 897

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S ST FS  A SL S  +   + ++
Sbjct: 637 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 686


>gi|6324833|ref|NP_014902.1| Rpt4p [Saccharomyces cerevisiae S288c]
 gi|2506090|sp|P53549|PRS10_YEAST RecName: Full=26S protease subunit RPT4; AltName: Full=26S protease
           subunit SUG2; AltName: Full=Proteasomal cap subunit
 gi|1420585|emb|CAA99481.1| CRL13 [Saccharomyces cerevisiae]
 gi|1931623|gb|AAB51594.1| proteasome cap subunit [Saccharomyces cerevisiae]
 gi|190407563|gb|EDV10830.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae
           RM11-1a]
 gi|256269612|gb|EEU04894.1| Rpt4p [Saccharomyces cerevisiae JAY291]
 gi|259149735|emb|CAY86539.1| Rpt4p [Saccharomyces cerevisiae EC1118]
 gi|285815133|tpg|DAA11026.1| TPA: Rpt4p [Saccharomyces cerevisiae S288c]
 gi|323302973|gb|EGA56777.1| Rpt4p [Saccharomyces cerevisiae FostersB]
 gi|323331571|gb|EGA72986.1| Rpt4p [Saccharomyces cerevisiae AWRI796]
 gi|323335464|gb|EGA76750.1| Rpt4p [Saccharomyces cerevisiae Vin13]
 gi|323346438|gb|EGA80726.1| Rpt4p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323352176|gb|EGA84713.1| Rpt4p [Saccharomyces cerevisiae VL3]
          Length = 437

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265


>gi|86135095|ref|ZP_01053677.1| Holliday junction ATP-dependent DNA helicase RuvB [Polaribacter sp.
           MED152]
 gi|85821958|gb|EAQ43105.1| Holliday junction ATP-dependent DNA helicase RuvB [Polaribacter sp.
           MED152]
          Length = 340

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 46/241 (19%)

Query: 38  ISRDDL------------LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +S DD              V +A ++   L            +  GP G GK+ LA+I +
Sbjct: 26  LSFDDFTGQDQALENLKIFVEAANQRGEAL---------DHALFHGPPGLGKTTLAHILA 76

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF------HIINSIHQYDSS 139
           ++ +          LD           L++ D+L  ++          ++ +++  Y   
Sbjct: 77  NELQVGIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYSAMEDYKID 136

Query: 140 LLMTARTFPVSWGVCLPDL-------CS-------RLKAATVVKISLPDDDFLEKVIVKM 185
           +++ +     +  + L           S       R +     ++     + L  +I + 
Sbjct: 137 IMIESGPNARTVQINLEPFTLIGATTRSGLLTAPMRARFGISSRLHYYSTELLTTIIQRS 196

Query: 186 FADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +  Q+ I  + A  I  R     R      + V   D   +     IT  +A   LK  
Sbjct: 197 ASILQVPISMEAAVEIAGRSRGTPRIANALLRRVR--DFAQIKGDGKITIEIAKYALKAL 254

Query: 243 Q 243
            
Sbjct: 255 H 255


>gi|85717700|ref|ZP_01048635.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695475|gb|EAQ33398.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 278

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 89  QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 148

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 149 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 197


>gi|84685387|ref|ZP_01013285.1| ATPase, AAA family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666544|gb|EAQ13016.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2654]
          Length = 436

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            S     +IL GP G GK+ +A + +D +        A      + D RK      +   
Sbjct: 50  ASGSLGSLILWGPPGVGKTTIARLLADVTDLHFIQISAIFTG--VTDLRKVFEAAKMRRQ 107

Query: 120 DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAA 165
           +   T LF    H  N   Q          ++L+   T           +    SR +  
Sbjct: 108 NGKGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAV---LSRAQVI 164

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD-------- 217
           T+ ++   D + + +   +   DR + +  +    +++  +        L++        
Sbjct: 165 TLKRLEPADLERMAQRAEREL-DRALPLTGEGREALIEMADGDGRALLNLIEQVMAWRVD 223

Query: 218 -KMDNLALSRG 227
            K+D  AL+  
Sbjct: 224 GKLDRDALATR 234


>gi|116670228|ref|YP_831161.1| AFG1 family ATPase [Arthrobacter sp. FB24]
 gi|116610337|gb|ABK03061.1| AFG1-family ATPase [Arthrobacter sp. FB24]
          Length = 345

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA++W               +     ++       +   K V +++
Sbjct: 83  IYLDGGFGVGKTHLLASLWHASPGPKAFGTFVEYTNLVGALSFRKTVEALSNYKLVCIDE 142

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
            +L D  DT L   ++  +      L  T+ T P S G
Sbjct: 143 FELDDPGDTVLMSRLMRELADAGVKLAATSNTLPGSLG 180


>gi|323307308|gb|EGA60588.1| Rpt4p [Saccharomyces cerevisiae FostersO]
          Length = 374

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265


>gi|320168088|gb|EFW44987.1| proteasome 26S subunit [Capsaspora owczarzaki ATCC 30864]
          Length = 449

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 227 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 278


>gi|307190651|gb|EFN74615.1| 26S protease regulatory subunit S10B [Camponotus floridanus]
          Length = 389

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|269139542|ref|YP_003296243.1| putative DNA recombination-associated ATPase RarA [Edwardsiella
           tarda EIB202]
 gi|267985203|gb|ACY85032.1| putative DNA recombination-associated ATPase RarA [Edwardsiella
           tarda EIB202]
 gi|304559431|gb|ADM42095.1| AAA family ATPase [Edwardsiella tarda FL6-60]
          Length = 447

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +    +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAELIARYGHAEVERISAVTSGIKEIREAIERA----RHNRDAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRME----RSLVFAEKLVDKM 219
              D   + +V+ +   DR+       + +  +    + + +     R+L   E + D +
Sbjct: 163 KALDAQDIAQVVQQAMTDRERGYGAQDLTLPTETRDALAELVSGDARRALNTLEMMADMV 222

Query: 220 DNLALSRGMGITRSLAAEV 238
           +  A      +T  L   V
Sbjct: 223 EADA-QGQRVLTLDLLRSV 240


>gi|256545396|ref|ZP_05472759.1| AAA family ATPase [Anaerococcus vaginalis ATCC 51170]
 gi|256398957|gb|EEU12571.1| AAA family ATPase [Anaerococcus vaginalis ATCC 51170]
          Length = 443

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 66/170 (38%), Gaps = 27/170 (15%)

Query: 68  ILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSI---LIDTRKPVLLEDIDLLDF- 121
           I  GP G GK+ LA I S+ +     + S +A  ++ +   +   +  +  E+   + F 
Sbjct: 56  IFYGPPGVGKTTLAKIISNSTNMAFEKVSAVASGINDLKKKIQIAKDNLKFENKKTILFI 115

Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++    H  N           +  + +L+ A T    + V    L SR+    V ++   
Sbjct: 116 DEI---HRFNKSQQDYLLPFVEDSTIILIGATTENPYFEVNKA-LISRMY---VFELKAH 168

Query: 174 DDDFLEKVI------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            DD L+K+I       ++  ++ I ID      +V+            ++
Sbjct: 169 TDDDLKKLIDMALSRDRLLQNKNIKIDDDARNTLVKYSNGDCRALLNALE 218


>gi|222445468|ref|ZP_03607983.1| hypothetical protein METSMIALI_01107 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435033|gb|EEE42198.1| hypothetical protein METSMIALI_01107 [Methanobrevibacter smithii
           DSM 2375]
          Length = 492

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 16/83 (19%)

Query: 55  LIDSW-PSWPSRVVILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSL 100
            +D+W    P + ++LVGP G GK+ LA   +              +S+    S I +S 
Sbjct: 28  WVDNWNAGNPQKPLLLVGPPGIGKTTLAQAIAREFSEYIELNASDKRSQDVIKSTIGESS 87

Query: 101 D--SILIDTRKPVLLEDIDLLDF 121
              S+  D  K ++L+++D +  
Sbjct: 88  SSKSLFGDDYKLLILDEVDGIHG 110


>gi|160331231|ref|XP_001712323.1| cdc48b [Hemiselmis andersenii]
 gi|159765770|gb|ABW97998.1| cdc48b [Hemiselmis andersenii]
          Length = 780

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP GSGK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 224 PPRGILMYGPPGSGKTLIARAVANEAGAFLFVINGPEIMSKLSGESESNLRKAFEEAEKN 283

Query: 107 TRKPVLLEDIDLLD 120
           +   + +++ID L 
Sbjct: 284 SPSIIFIDEIDSLA 297



 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 497 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESESNVREVFDKA 553


>gi|150951678|ref|XP_001388033.2| member of the AAA ATPase family of proteins [Scheffersomyces
           stipitis CBS 6054]
 gi|149388797|gb|EAZ64010.2| member of the AAA ATPase family of proteins [Pichia stipitis CBS
           6054]
          Length = 810

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 560 PTRGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 609


>gi|85717728|ref|ZP_01048661.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695458|gb|EAQ33383.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 221

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 32  QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 91

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 92  TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 140


>gi|125981363|ref|XP_001354688.1| GA17461 [Drosophila pseudoobscura pseudoobscura]
 gi|195164937|ref|XP_002023302.1| GL20276 [Drosophila persimilis]
 gi|54642999|gb|EAL31743.1| GA17461 [Drosophila pseudoobscura pseudoobscura]
 gi|194105407|gb|EDW27450.1| GL20276 [Drosophila persimilis]
          Length = 397

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|332662477|ref|YP_004445265.1| IstB domain-containing protein ATP-binding protein
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332664223|ref|YP_004447011.1| IstB domain-containing protein ATP-binding protein
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331291|gb|AEE48392.1| IstB domain protein ATP-binding protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332333037|gb|AEE50138.1| IstB domain protein ATP-binding protein [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 248

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+G  G+GK+ LAN    ++ +  +S +   L ++L                  I   
Sbjct: 100 IILIGKPGTGKTHLANAIGLEAAARGYSVLFTHLHTLLEKLAQGRIDSSHRRTLQQILAP 159

Query: 109 KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             ++L++I         L   F II   +++ S++  T+      WG  L D
Sbjct: 160 DLLILDEIGFRSLAPQALDDFFEIIRHRYEHKSTI-FTSNRNFEDWGAILGD 210


>gi|332030866|gb|EGI70502.1| 26S protease regulatory subunit S10B [Acromyrmex echinatior]
          Length = 393

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 222 ------MFNYARDHQ 230


>gi|257091743|ref|YP_003165384.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257092166|ref|YP_003165807.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257092494|ref|YP_003166135.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257093054|ref|YP_003166695.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257093393|ref|YP_003167034.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257095931|ref|YP_003169572.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257044267|gb|ACV33455.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044690|gb|ACV33878.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045018|gb|ACV34206.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045578|gb|ACV34766.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045917|gb|ACV35105.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048455|gb|ACV37643.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 261

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 39/149 (26%)

Query: 67  VILVGPSGSGKSCLANIW---SDKSR----------------STRFSNIAKSLDSILIDT 107
           V+LVGPSG GK+ LA      + ++                 +    N  K++    I  
Sbjct: 104 VVLVGPSGVGKTHLAIALGYRAAQAGIKTRFTTAADLLLTLSAAHAQNQLKAVMHRAIAA 163

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
            + +++++I  L  +  Q    F +I +      SL++T+      W             
Sbjct: 164 YRLLIIDEIGYLPMSREQANLFFQVI-AARYEKGSLIVTSNLSFGQWD------------ 210

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFI 193
           AT  +    D      ++ ++    QI  
Sbjct: 211 ATFAQ----DATLTAALLDRLLHHAQIVP 235


>gi|227501007|ref|ZP_03931056.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098]
 gi|227216780|gb|EEI82178.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098]
          Length = 655

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ +A   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLMAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268

Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151
           V +++ID +            D  +  L  ++N        +  +L+ A   P       
Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLAATNRPEILDPAL 328

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 329 TRPGRFDRQVQVELPDLKGR 348


>gi|226371786|gb|ACO51518.1| LP16188p [Drosophila melanogaster]
          Length = 406

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 183 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 234

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 235 ------MFNYARDHQ 243


>gi|195447510|ref|XP_002071246.1| GK25687 [Drosophila willistoni]
 gi|194167331|gb|EDW82232.1| GK25687 [Drosophila willistoni]
          Length = 397

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|194763525|ref|XP_001963883.1| GF21021 [Drosophila ananassae]
 gi|190618808|gb|EDV34332.1| GF21021 [Drosophila ananassae]
          Length = 397

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|239827838|ref|YP_002950462.1| recombination factor protein RarA [Geobacillus sp. WCH70]
 gi|239808131|gb|ACS25196.1| AAA ATPase central domain protein [Geobacillus sp. WCH70]
          Length = 430

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 67/193 (34%), Gaps = 25/193 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---- 120
             ++L G  G GK+ LA+  +   +   F+  A +     ++     ++E   L      
Sbjct: 43  PSLLLYGEPGVGKTSLAHAIAGTVQRDFFAVNATTSGKKELEE----VVETAKLTGNVIL 98

Query: 121 -FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
             ++    H  N   Q           + +   T    +    P + SR      +K   
Sbjct: 99  FIDEI---HRFNKAQQDYLLPHIEQGLITLIGATTENPFHEVNPAIRSRCGQIKQLKRLE 155

Query: 173 PDDDFLEKVIVKMF--ADRQI-FIDKKLAAYIVQRM-ERSLVFAEKLVDKMDNLALSRGM 228
           P D  +  ++ +     DR +  +   +   ++  + E S   A   ++ ++ +  +   
Sbjct: 156 PADILI--LLQRALHDRDRGLGKLSIDMEERLLSMIAESSGGDARLALNLLEAIVYASEN 213

Query: 229 GITRSLAAEVLKE 241
                +A + ++E
Sbjct: 214 DGQIRVAEQTVRE 226


>gi|167563730|ref|ZP_02356646.1| recombination factor protein RarA [Burkholderia oklahomensis EO147]
          Length = 436

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 26/172 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMDQARDTLNRTGRH-TIL 108

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYLLKS 162

Query: 173 PDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             +D L +++ +    A   +  D K    +V   +     A + ++ ++  
Sbjct: 163 LTEDELRQLLARAQDTALAGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211


>gi|126653989|ref|ZP_01725824.1| hypothetical protein BB14905_09600 [Bacillus sp. B14905]
 gi|126589506|gb|EAZ83649.1| hypothetical protein BB14905_09600 [Bacillus sp. B14905]
          Length = 420

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 31/211 (14%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR- 89
                  +   D +         ++I    +     ++L G  G GK+ +AN  +  S+ 
Sbjct: 3   PLTLDEIVGHQDFI--GPNTALYKMI---QNEHVPSMLLYGEPGIGKTSIANAIAGSSQL 57

Query: 90  --------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSS 139
                        ++   +    I  +  + L++I   +    DT L H+ N       S
Sbjct: 58  PFFALNATRAGKKDVEDIVQEARISGKVLLFLDEIHRFNKLQQDTLLPHVEN------GS 111

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQI-----F 192
           +++   T    +    P + SR     + ++     + L +++ K  AD  R +      
Sbjct: 112 IVLIGATTENPYHDVNPAIRSR--CGEIYQLKRLTKENLMELVEKALADEKRGLGKYHFV 169

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +      +I +        A  L++ +   +
Sbjct: 170 LTPSQIEHIAEAANGDARKALTLLESIYYAS 200


>gi|77463057|ref|YP_352561.1| ATPase [Rhodobacter sphaeroides 2.4.1]
 gi|77387475|gb|ABA78660.1| ATPase [Rhodobacter sphaeroides 2.4.1]
          Length = 217

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 23/138 (16%)

Query: 42  DLLVHSAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWSD-------KSRSTRF 93
           D       E  VR L         R V+L+G +G+GKS LA   +        + R    
Sbjct: 50  DFTGTPVNEALVRELATRSLVADQRNVVLIGGTGTGKSHLAIAIARALIRNGTRGRFFNV 109

Query: 94  SNIAKSLDSILID---TRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSS 139
            ++   L++        R    L  +D +  ++             LFH+I+ +++  +S
Sbjct: 110 VDLVNKLEAETRSGKQGRTADYLGRLDFVILDELGYLPFAQAGGQLLFHLISRLYER-TS 168

Query: 140 LLMTARTFPVSWGVCLPD 157
           +++T       W     D
Sbjct: 169 IIVTTNLAFGEWPTVFGD 186


>gi|85717617|ref|ZP_01048558.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695582|gb|EAQ33499.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 294

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 105 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 164

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 165 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 213


>gi|313887680|ref|ZP_07821362.1| DNA replication protein DnaC [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846289|gb|EFR33668.1| DNA replication protein DnaC [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 318

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 21/107 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL--IDTRKPVLLED--------I 116
           ++L GP+G GK+ L N  + +   +    I ++   IL  I+ RK   +ED         
Sbjct: 184 LLLWGPTGQGKTFLLNCIAAELIKSDVIVIYQTAYEILKTIEDRKFKNIEDDKYNLYFEA 243

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           DLL  +D           +++F+IIN+        L++    P    
Sbjct: 244 DLLIVDDLGIEFVNSFTASEIFNIINTRLLRGKKTLISTNLSPKELS 290


>gi|304387476|ref|ZP_07369667.1| replication-associated recombination protein A [Neisseria
           meningitidis ATCC 13091]
 gi|304338569|gb|EFM04688.1| replication-associated recombination protein A [Neisseria
           meningitidis ATCC 13091]
          Length = 436

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L G  G GK+ LA I +    +      A    S + D R+ +   +I L     T L
Sbjct: 50  MLLWGSPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVENGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162

Query: 174 DDDFLEKVIVKMFA 187
             D L+K+I K+ A
Sbjct: 163 SSDDLKKLIAKVLA 176


>gi|298674369|ref|YP_003726119.1| 26S proteasome subunit P45 family protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287357|gb|ADI73323.1| 26S proteasome subunit P45 family [Methanohalobium evestigatum
           Z-7303]
          Length = 424

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P   V+L GP GSGK+ +A   + ++ +T        L    I     ++ +  ++ 
Sbjct: 201 PPSGVLLYGPPGSGKTLIAKAVASQANATFIRMSGSDLVQKFIGEGARLVKDVFEMA 257


>gi|254719264|ref|ZP_05181075.1| recombination factor protein RarA [Brucella sp. 83/13]
 gi|265984263|ref|ZP_06096998.1| recombination factor protein RarA [Brucella sp. 83/13]
 gi|306838015|ref|ZP_07470873.1| recombination factor protein RarA [Brucella sp. NF 2653]
 gi|264662855|gb|EEZ33116.1| recombination factor protein RarA [Brucella sp. 83/13]
 gi|306406939|gb|EFM63160.1| recombination factor protein RarA [Brucella sp. NF 2653]
          Length = 437

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 49  ASGSLGSMIFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +      + + +D +  A +++  +     A  L +++  
Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQGLPLDDEARASLIRMADGDGRAALTLAEEVWR 218

Query: 222 LA 223
            A
Sbjct: 219 AA 220


>gi|291288792|ref|YP_003505608.1| Holliday junction DNA helicase RuvB [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885952|gb|ADD69652.1| Holliday junction DNA helicase RuvB [Denitrovibrio acetiphilus DSM
           12809]
          Length = 341

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 74/195 (37%), Gaps = 21/195 (10%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH- 128
            GP G GK+ LANI S +      S     +D           +++ D+L  ++    H 
Sbjct: 57  HGPPGLGKTTLANIISHELGVNINSTSGPVIDKAGDLAAILTNIQEGDVLFIDEIHRLHS 116

Query: 129 -----IINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS--RLKAATVVK 169
                +  ++  +   +L+       +  + LP             L S  R +   +++
Sbjct: 117 NVEEILYPAMEDFKLDILIGQGPAARTVKIDLPPFTLIGATTRAGLLTSPLRDRFGMIMR 176

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGM 228
           +   D D L+ ++++     +  I+   A  I  R   +   A +++ ++ D   +    
Sbjct: 177 LEFYDVDELKHILLRGAGILEADIEDAAAEEIAGRSRGTPRIAHRILRRVRDFADILNNG 236

Query: 229 GITRSLAAEVLKETQ 243
            IT  +A E L+  +
Sbjct: 237 QITLDMARESLRRLE 251


>gi|218884381|ref|YP_002428763.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus kamchatkensis
           1221n]
 gi|218765997|gb|ACL11396.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus kamchatkensis
           1221n]
          Length = 729

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R V+L GP G GK+ LA   + +S +   +
Sbjct: 487 PPRGVLLYGPPGCGKTLLAKAVATESGANFIA 518



 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 31/124 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + ++L GP G+GK+ LA   +++  +              +    + L  I    +  
Sbjct: 207 PPKGILLYGPPGTGKTLLAKALANEVNAYFVTINGPEIMSKYYGESEQRLREIFKLAKKK 266

Query: 109 -----KPVLLEDIDLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151
                  + +++ID +                 QL  +++ +    + +++ A   P + 
Sbjct: 267 SRKNPAIIFIDEIDAIAPKRDEVVGEVERRVVAQLLALMDGLESRGNVIVIAATNRPNAL 326

Query: 152 GVCL 155
              L
Sbjct: 327 DPAL 330


>gi|213970053|ref|ZP_03398185.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1]
 gi|301381409|ref|ZP_07229827.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058407|ref|ZP_07249948.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
           K40]
 gi|302130344|ref|ZP_07256334.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213925157|gb|EEB58720.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1]
          Length = 440

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R++ +  +  A ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEDRGLGQRKLTLSDEGFAMLMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDIELLQSLLGDSRR 239


>gi|254426145|ref|ZP_05039862.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196188568|gb|EDX83533.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 652

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 46/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS  A     + +                     
Sbjct: 211 VLLVGPPGTGKTLLARAIAGEAGVPFFSISASEFIEMFVGVGASRVRDLFEQAKQQAPCI 270

Query: 111 VLLEDIDLL----------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           V ++++D L            ND       QL   ++        +L+ A   P      
Sbjct: 271 VFIDELDALGKSRASNNRFAGNDEREQTLNQLLAEMDGFVPNAGVILLAATNRPEVLDPA 330

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLA-AYIVQRMERSLV 210
           L      L+A      + +  PD    E ++     D  + + + +A   +  R      
Sbjct: 331 L------LRAGRFDRRIVVDRPDKKGREAILAIHAKD--VHLAEDVALDKLAARTP-GFA 381

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  AL     
Sbjct: 382 GA-DLANLVNEAALLAARR 399


>gi|92116492|ref|YP_576221.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
 gi|92119172|ref|YP_578901.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
 gi|91799386|gb|ABE61761.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
 gi|91802066|gb|ABE64441.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
          Length = 287

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R  +LVG +G+GK+ LA   +        + R     ++   L+    + R+  + E +
Sbjct: 98  QRNAVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRIAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 206


>gi|6324691|ref|NP_014760.1| Rpt5p [Saccharomyces cerevisiae S288c]
 gi|464859|sp|P33297|PRS6A_YEAST RecName: Full=26S protease regulatory subunit 6A; AltName:
           Full=Tat-binding protein homolog 1; Short=TBP-1
 gi|313878|emb|CAA51971.1| YTA1 [Saccharomyces cerevisiae]
 gi|1050819|emb|CAA62114.1| ORF O3258 [Saccharomyces cerevisiae]
 gi|1164962|emb|CAA64037.1| YOR3258w [Saccharomyces cerevisiae]
 gi|1420311|emb|CAA99315.1| YTA1 [Saccharomyces cerevisiae]
 gi|151945739|gb|EDN63980.1| regulatory particle triple-a protein, or regulatory particle
           triphosphatase [Saccharomyces cerevisiae YJM789]
 gi|190407446|gb|EDV10713.1| 26S protease regulatory subunit 6A [Saccharomyces cerevisiae
           RM11-1a]
 gi|256272993|gb|EEU07957.1| Rpt5p [Saccharomyces cerevisiae JAY291]
 gi|259149600|emb|CAY86404.1| Rpt5p [Saccharomyces cerevisiae EC1118]
 gi|285814999|tpg|DAA10892.1| TPA: Rpt5p [Saccharomyces cerevisiae S288c]
 gi|323302883|gb|EGA56687.1| Rpt5p [Saccharomyces cerevisiae FostersB]
 gi|323307176|gb|EGA60459.1| Rpt5p [Saccharomyces cerevisiae FostersO]
 gi|323335519|gb|EGA76804.1| Rpt5p [Saccharomyces cerevisiae Vin13]
 gi|323352094|gb|EGA84631.1| Rpt5p [Saccharomyces cerevisiae VL3]
          Length = 434

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T     A  L  + I     ++                +
Sbjct: 221 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFI 280

Query: 114 EDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N +      D   ++ A          L  L
Sbjct: 281 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPAL--L 338

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP +D   +++      R++  D  +
Sbjct: 339 RSGRLD--RKIEFPLPSEDSRAQILQ--IHSRKMTTDDDI 374


>gi|313499566|gb|ADR60932.1| AFG1-family ATPase [Pseudomonas putida BIRD-1]
          Length = 356

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 23/110 (20%)

Query: 65  RVVILVGPSGSGKSCL----------------------ANIWSDKSRSTRFSNIAKSLDS 102
           R + L G  G GKS L                      A +     R     +   +   
Sbjct: 65  RSLYLYGSVGRGKSWLLDGFFQAVPIAAKLRLHFHDFFARLHQGMHRHRALDDALGATLD 124

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151
            L+   + +  ++  + D  D  L   + N++      LL+T+   P   
Sbjct: 125 ELVGGCQVLCFDEFHVHDIGDAMLLTRLFNALFARGVYLLVTSNYAPEGL 174


>gi|282896586|ref|ZP_06304604.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
 gi|281198528|gb|EFA73411.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
          Length = 615

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 46/154 (29%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS------------TRFSNIAKSLDSILIDTRKP-- 110
           R ++L GP G+GK+ LA   + ++R+                   +++  +    R+   
Sbjct: 396 RGILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLTRWVGASEQAVRELFAKARQADP 455

Query: 111 --VLLEDIDLLD-----------------------------FNDTQLFHIINSIHQYDSS 139
             + +++ID L                                +  +    N     D +
Sbjct: 456 CVIFIDEIDTLAPARGTYTGDSGVSNRVVGQLLTELDGLETGTNILVIGATNRPDALDPA 515

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           LL   R   +   V LP+L SRL+   V     P
Sbjct: 516 LLRAGRLD-LQLKVDLPNLASRLEILRVYTEGRP 548


>gi|217033284|ref|ZP_03438715.1| hypothetical protein HP9810_9g37 [Helicobacter pylori 98-10]
 gi|216944225|gb|EEC23650.1| hypothetical protein HP9810_9g37 [Helicobacter pylori 98-10]
          Length = 391

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +   +     F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|195133630|ref|XP_002011242.1| GI16424 [Drosophila mojavensis]
 gi|193907217|gb|EDW06084.1| GI16424 [Drosophila mojavensis]
          Length = 397

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|145551855|ref|XP_001461604.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429439|emb|CAK94231.1| unnamed protein product [Paramecium tetraurelia]
          Length = 648

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 16/75 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++    F       D + +                     
Sbjct: 254 ILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVRDIFKAARAKAPSI 313

Query: 111 VLLEDIDLLDFNDTQ 125
           + +++ID +      
Sbjct: 314 IFIDEIDSIGGRRRA 328


>gi|29841289|gb|AAP06321.1| similar to NM_007126 transitional endoplasmic reticulum ATPase
           [Schistosoma japonicum]
          Length = 308

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 28/116 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   +++S S  F                SN+ K+ +    +
Sbjct: 19  PPRGILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 78

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150
               + ++++D +                 QL  +++ + Q    ++M A   P S
Sbjct: 79  APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNS 134


>gi|1147800|gb|AAA85134.1| Sug2p [Saccharomyces cerevisiae]
          Length = 437

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265


>gi|163848629|ref|YP_001636673.1| Holliday junction DNA helicase RuvB [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526564|ref|YP_002571035.1| Holliday junction DNA helicase RuvB [Chloroflexus sp. Y-400-fl]
 gi|189046024|sp|A9WHF8|RUVB_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767419|sp|B9LBR4|RUVB_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|163669918|gb|ABY36284.1| Holliday junction DNA helicase RuvB [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450443|gb|ACM54709.1| Holliday junction DNA helicase RuvB [Chloroflexus sp. Y-400-fl]
          Length = 350

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 77/201 (38%), Gaps = 27/201 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            +  GP G GK+ LAN+ +++  +        +++           L+  D+L  ++   
Sbjct: 57  TLFYGPPGLGKTSLANVVANEMGAKIKITSGPAIERAGDLAAILTNLQANDVLFIDEV-- 114

Query: 127 FHIINSIHQ-------YDSSL-LMTARTF-PVSWGVCLPD------------LCS--RLK 163
            H +N   +        D +L L+  +     S  + LP             L S  R +
Sbjct: 115 -HRLNRAVEEVLYPAMEDFALDLVVGKGPGARSLRLNLPRFTVIGATTRLALLTSPLRDR 173

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
              V ++    DD + +++ +      + I  + A  I +R   +   A +++ ++ D  
Sbjct: 174 FVAVHRLVFYSDDAMTEIVSRSARILGVPISPEGAREIGRRARGTPRIANRILRRVRDYA 233

Query: 223 ALSRGMGITRSLAAEVLKETQ 243
            +     IT  +A + L + +
Sbjct: 234 QVVADGAITLQVARDALAQLE 254


>gi|325180998|emb|CCA15408.1| chromosome transmission fidelity protein putative [Albugo laibachii
           Nc14]
          Length = 875

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSIL 104
           R +D+ P    ++++L GP G+GK+ LA+I +  +   +   +        +L
Sbjct: 286 RHLDARPK--VKIILLCGPPGAGKTTLAHIIAKHAGYNAVEINASDDRTAQVL 336


>gi|317968012|ref|ZP_07969402.1| recombination factor protein RarA/unknown domain fusion protein
           [Synechococcus sp. CB0205]
          Length = 727

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G GK+ LA I +  +R+   S  A       +          +D      + L
Sbjct: 56  LIFYGPPGVGKTTLARIIAATTRAHFSSLNAVLAGVKDLRHEVDEAKRRLDQHGLR-SLL 114

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  NS          +  +  L+ A T    + V    L SR   + + ++   +
Sbjct: 115 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLQPLE 170

Query: 175 DDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +  L +++ +   DR+       + I  + AA++V+            ++
Sbjct: 171 NRHLHQLLERALRDRERGYGERPVQISPEAAAHLVEVAGGDARSLLNALE 220


>gi|321250239|ref|XP_003191739.1| helicase [Cryptococcus gattii WM276]
 gi|317458206|gb|ADV19952.1| Helicase, putative [Cryptococcus gattii WM276]
          Length = 752

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
             PS V+ L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 438 DAPSGVL-LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 488


>gi|187735135|ref|YP_001877247.1| Holliday junction DNA helicase RuvB [Akkermansia muciniphila ATCC
           BAA-835]
 gi|238691873|sp|B2UPI9|RUVB_AKKM8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|187425187|gb|ACD04466.1| Holliday junction DNA helicase RuvB [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 339

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 68/208 (32%), Gaps = 35/208 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LANI ++       +     ++           LE  D+L  ++   
Sbjct: 56  ILLSGPPGLGKTTLANIIANAVGCRIHTTSGPQIEKAGDLAGVLTNLEKGDILFIDEIHR 115

Query: 127 FH------IINSIHQYDSSLLMTARTFPVSWGVCL-------------------PDLCSR 161
            H      +  ++   D  L +     P +  + L                   P L SR
Sbjct: 116 LHPAIEEYLYPAM--EDFRLDIIIDQGPNARSIQLNLPKFTLVGATTRAGMLTSP-LRSR 172

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDK 218
                V ++     + L  +I +      + +D + A  I  R     R      + V  
Sbjct: 173 F--GLVNRLDYYTREELCAIIERSAGLLNVPVDPEGALQIALRSRGTPRVANSLLRWVR- 229

Query: 219 MDNLALSRGMGITRSLAAEVLKETQQCD 246
            D   +     IT  LA + L   +  D
Sbjct: 230 -DYAQVRGDGVITEQLAHDALTMIEIDD 256


>gi|171679990|ref|XP_001904941.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939621|emb|CAP64848.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1120

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
            +L GP G+GK+ LA + + +      S  +  ++S
Sbjct: 45  ALLYGPPGTGKTHLARVLAHEHELVMISVSSADIES 80


>gi|332185004|ref|ZP_08386753.1| ATPase associated with various cellular activities family protein
           [Sphingomonas sp. S17]
 gi|332014728|gb|EGI56784.1| ATPase associated with various cellular activities family protein
           [Sphingomonas sp. S17]
          Length = 447

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ +A + + +    RF+ I+     +  D +K              T L
Sbjct: 60  MILWGPPGTGKTTIARLLAAEVG-LRFAAISAVFSGVA-DLKKVFAEARDHARAGQRTLL 117

Query: 127 F----HIINSIHQYD 137
           F    H  N   Q  
Sbjct: 118 FVDEIHRFNRAQQDG 132


>gi|322707738|gb|EFY99316.1| DNA replication ATPase [Metarhizium anisopliae ARSEF 23]
          Length = 551

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 35/201 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS-----ILIDTRKPVLLEDIDLL 119
             +IL G SG+GK+ +A   +    S      A S        +  +    + L      
Sbjct: 173 PSMILWGASGTGKTTIARCIAHMVGSRFIELNATSTGVSECKKLFQEAANELTL------ 226

Query: 120 DFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
               T +F    H  N           +  +  L+ A T   S+ V    L SR      
Sbjct: 227 TGRRTIIFCDEIHRFNKAQQDVFLKPVEAGTVTLIGATTENPSFKVANA-LLSR---CRT 282

Query: 168 VKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
             +    +  +  ++ +     ++       ID ++  Y+ +  +     A  L++    
Sbjct: 283 FTLRSLTEQDITGILKRAREAEEVVYPPTPLIDDEMMGYLARFSDGDARTALNLLEV--A 340

Query: 222 LALSRGMGITRSLAAEVLKET 242
           L+L+   GIT+      L +T
Sbjct: 341 LSLTTREGITKEDIKSSLTKT 361


>gi|297280699|ref|XP_001096285.2| PREDICTED: nuclear VCP-like isoform 1 [Macaca mulatta]
          Length = 765

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ LA+  + +         A  +                +  + +
Sbjct: 206 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 265

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 266 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 325

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +P +   E+++  +   R++ + + 
Sbjct: 326 DPALR------RAGRFDREICLGIPGEASRERILQTLC--RKLRLPQA 365



 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 36/160 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVL 112
           V+L GP G GK+ LA   +++S     S     L ++ +   +              P +
Sbjct: 527 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 586

Query: 113 L--EDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWG--VCLP 156
           +  +++D L                 QL   ++ +       +M A   P      +  P
Sbjct: 587 IFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRP 646

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196
               RL     V +  P D      I+K            
Sbjct: 647 ---GRLDKTLFVGLPPPTDRL---AILKTITKNGTKPPLD 680


>gi|289579864|ref|YP_003478330.1| ATPase AAA, CDC48 subfamily [Natrialba magadii ATCC 43099]
 gi|289529417|gb|ADD03768.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099]
          Length = 742

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 63/164 (38%), Gaps = 33/164 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEE 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ +      +++ A     S    
Sbjct: 282 SPAIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEARGQVIVIAATNRVDS---V 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
            P L    +    ++I +PD+   E+++      R + +   +A
Sbjct: 339 DPALRRPGRFDREIEIGVPDEVGREEILQ--IHTRGMPLSDDVA 380



 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   V+L GP G+GK+ +A   ++++ +   S
Sbjct: 495 PPAGVLLYGPPGTGKTLMAKAVANETNANFIS 526


>gi|241236668|ref|XP_002400913.1| 26S protease regulatory subunit 6A, putative [Ixodes scapularis]
 gi|215496094|gb|EEC05735.1| 26S protease regulatory subunit 6A, putative [Ixodes scapularis]
          Length = 1014

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + +++ST        L  + I     ++ +
Sbjct: 531 PPKGVLLYGPPGTGKTLMARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 582


>gi|195997743|ref|XP_002108740.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190589516|gb|EDV29538.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 387

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +  +     ++ ++    I     ++ E
Sbjct: 164 PPKGVLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE 215


>gi|151941877|gb|EDN60233.1| cell division cycle-related protein [Saccharomyces cerevisiae
           YJM789]
 gi|190405128|gb|EDV08395.1| cell division control protein 48 [Saccharomyces cerevisiae RM11-1a]
 gi|256274085|gb|EEU08996.1| Cdc48p [Saccharomyces cerevisiae JAY291]
 gi|259145118|emb|CAY78382.1| Cdc48p [Saccharomyces cerevisiae EC1118]
 gi|323349430|gb|EGA83654.1| Cdc48p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355818|gb|EGA87631.1| Cdc48p [Saccharomyces cerevisiae VL3]
          Length = 835

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 50/166 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366

Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181
                       + +PD   RL+   V++I      L DD  LE +
Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEAL 409



 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PS+ V+  GP G+GK+ LA   + +  +                   SNI    D     
Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579

Query: 107 TRKPVLLEDIDLLD 120
               V L+++D + 
Sbjct: 580 APTVVFLDELDSIA 593


>gi|6320077|ref|NP_010157.1| Cdc48p [Saccharomyces cerevisiae S288c]
 gi|1705679|sp|P25694|CDC48_YEAST RecName: Full=Cell division control protein 48
 gi|1431189|emb|CAA98694.1| CDC48 [Saccharomyces cerevisiae]
 gi|1449400|emb|CAA40276.1| CDC48p [Saccharomyces cerevisiae]
 gi|285810910|tpg|DAA11734.1| TPA: Cdc48p [Saccharomyces cerevisiae S288c]
          Length = 835

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 50/166 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366

Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181
                       + +PD   RL+   V++I      L DD  LE +
Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEAL 409



 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PS+ V+  GP G+GK+ LA   + +  +                   SNI    D     
Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579

Query: 107 TRKPVLLEDIDLLD 120
               V L+++D + 
Sbjct: 580 APTVVFLDELDSIA 593


>gi|311897757|dbj|BAJ30165.1| putative cell division protein FtsH [Kitasatospora setae KM-6054]
          Length = 669

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 51/215 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 205 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 264

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 265 IFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 324

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PDL  RL    V +   P   D  L  V  +        +   L  
Sbjct: 325 LRPGRFDRQIAVDRPDLQGRLDILKVHQKGKPIAPDVDLSAVAKRTPGFTGADLSNVLNE 384

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230
           AA +  R E+ L+  + L + +D       +   I
Sbjct: 385 AALLTARSEKKLIDNQTLDEAIDRVVAGPQKRSRI 419


>gi|291521790|emb|CBK80083.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Coprococcus catus GD/7]
          Length = 444

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 28/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124
           +IL GP G+GK+ +A + ++ + +      A       ++    V+ E  D +      T
Sbjct: 55  IILYGPPGTGKTTIAKVIANTTSAAFTQINATVAGKKDMEQ---VVQEAKDRMGMYGKRT 111

Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V    L SR   + + ++  
Sbjct: 112 ILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SVIFELKP 167

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV 202
              + +  +I +   D  R +      I      ++ 
Sbjct: 168 LSAEDIGVLIRRAVYDTERGMGSYGAEISDDAVDFLA 204


>gi|257462825|ref|ZP_05627231.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. D12]
 gi|317060454|ref|ZP_07924939.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D12]
 gi|313686130|gb|EFS22965.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D12]
          Length = 334

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA + +++  S         L+           LE+ D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLAGVIANEMGSNLKITSGPVLEKAGDLAAILTSLEENDVLFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +N+  + 
Sbjct: 113 -HRLNTAVEE 121


>gi|197294533|ref|YP_001799074.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
 gi|171853860|emb|CAM11822.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense]
          Length = 647

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 40/163 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GP G+GK+ LA   + ++    F+      D + +                     
Sbjct: 210 VLLYGPPGTGKTLLAKAVAGEAGVPFFAAAGSDFDEVYVGLGASRIRDLFKEAQLSAPCI 269

Query: 111 VLLEDIDLLD----------FNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157
           V +++I+ +            +D  L  +   ++  +Q    +++ A   P +    +  
Sbjct: 270 VFIDEIEAVAKKRGSVMTSGGSDQTLNQLLVEMDGFNQKKGVIVIAATNRPETLDTAI-- 327

Query: 158 LCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               L+         ISLP+    E ++    +++      ++
Sbjct: 328 ----LRPGRFDRHFNISLPNVVDREAILKLHASNK--TFSDEV 364


>gi|156062042|ref|XP_001596943.1| hypothetical protein SS1G_01135 [Sclerotinia sclerotiorum 1980]
 gi|154696473|gb|EDN96211.1| hypothetical protein SS1G_01135 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 463

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 250 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 309

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 310 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 367

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 368 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMTVDDAV 403


>gi|83815259|ref|YP_445272.1| Holliday junction DNA helicase B [Salinibacter ruber DSM 13855]
 gi|97190287|sp|Q2S3F9|RUVB_SALRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|83756653|gb|ABC44766.1| Holliday junction DNA helicase RuvB [Salinibacter ruber DSM 13855]
          Length = 344

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ LA+I +++  +   ++    L+           LE+ DLL  ++ 
Sbjct: 59  VLLSGPPGLGKTTLAHIIANEMGARIRTSSGPVLEKPADIAGVLTNLEEGDLLFIDEI 116


>gi|37521678|ref|NP_925055.1| recombination factor protein RarA/unknown domain fusion protein
           [Gloeobacter violaceus PCC 7421]
 gi|35212676|dbj|BAC90050.1| glr2109 [Gloeobacter violaceus PCC 7421]
          Length = 747

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 30/158 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---D 123
           +I  GP G+GK+ LA I +  +R+   +  A       I       +++           
Sbjct: 68  LIFYGPPGTGKTTLARIIAGTTRAHFIAINAVLAGVKDIRE----AIDEAKSRRGQFGRR 123

Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N           +  + +L+ A T    + V    L SR   + + ++ 
Sbjct: 124 TILFVDEVHRFNKSQQDALLPWIENGTIVLVGATTENPFFEVNKA-LVSR---SRLFQLK 179

Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIV 202
           L + + L  V ++  AD       R + +D +  A++V
Sbjct: 180 LLESEDLRAVALQALADTERGYGKRNVRLDPEALAHLV 217


>gi|331017252|gb|EGH97308.1| recombination factor protein RarA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 440

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R++ +  +  A ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEDRGLGQRKLTLSDEGFAMLMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDIELLQSLLGDSRR 239


>gi|302855097|ref|XP_002959049.1| hypothetical protein VOLCADRAFT_70259 [Volvox carteri f.
           nagariensis]
 gi|300255615|gb|EFJ39910.1| hypothetical protein VOLCADRAFT_70259 [Volvox carteri f.
           nagariensis]
          Length = 196

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 14/153 (9%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GK+ LA   + +SR+T       S+ S+     +  +    +     
Sbjct: 5   PPKALLLFGPPGTGKTLLARAVATESRATFLPVTGDSVLSMWYGQSEQNVKALFEKARKR 64

Query: 123 DTQLFHIINSIHQ---------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
              +  I     Q          +  +++ A   P  W +    L SR   +  + + LP
Sbjct: 65  QPAIIFIDEQAQQGPGGGGDGGDNRIVVIAATNTP--WDLDEAAL-SRF--SRRIYVPLP 119

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
           D    E ++ K        +       + +R +
Sbjct: 120 DRGTREALMRKAMEGIACDVSDSAWQRLAERCD 152


>gi|225713006|gb|ACO12349.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
 gi|290561741|gb|ADD38268.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
          Length = 392

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 220

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 221 ------MFNYARDHQ 229


>gi|195469930|ref|XP_002099889.1| GE16469 [Drosophila yakuba]
 gi|194187413|gb|EDX00997.1| GE16469 [Drosophila yakuba]
          Length = 397

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|163751742|ref|ZP_02158960.1| hypothetical protein KT99_12234 [Shewanella benthica KT99]
 gi|161328394|gb|EDP99553.1| hypothetical protein KT99_12234 [Shewanella benthica KT99]
          Length = 441

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 21/153 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------L 113
            SR +++ GP G+GKS L    +     T     A ++ + +I    P L         L
Sbjct: 170 SSRPILIYGPPGTGKSYLCRNLNATLGDTVLIPYAIAVGTEIIQVYDPQLHHAVDNAIEL 229

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV----- 168
           + +DL+  +D           +    L +T             D  SR   A +      
Sbjct: 230 DQLDLVKGHDP-------RWIECKRPLRITGGELSAEMLEVQFDSHSRTYMAPIQLKANN 282

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
            I L DD   +++  K   +R I   ++   ++
Sbjct: 283 GILLLDDLGRQRISAKQLFNRWIIPMEEQRDFL 315


>gi|149641609|ref|XP_001512479.1| PREDICTED: similar to nuclear VCP-like protein NVLp.2
           [Ornithorhynchus anatinus]
          Length = 677

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R  +L GP G GK+ LA   + +         A  +                +  +  
Sbjct: 115 PPRGFLLHGPPGCGKTLLAQAIAGELDLPILKIAATEIVSGVSGESEQKLRELFEQAVSS 174

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   NS+      L++ A   P S 
Sbjct: 175 APCILFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNSLAATAQVLVIGATNRPDSL 234

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   E+++  +   R++ + + 
Sbjct: 235 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQS 274



 Score = 36.3 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   +++S     S     L ++ +   +  +
Sbjct: 439 ILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 484


>gi|114052605|ref|NP_001040484.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
 gi|95103080|gb|ABF51481.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
          Length = 396

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 173 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 224

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 225 ------MFNYARDHQ 233


>gi|124087412|ref|XP_001346845.1| AAA ATPase, cell division control protein [Paramecium tetraurelia
           strain d4-2]
 gi|145474957|ref|XP_001423501.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057234|emb|CAH03218.1| AAA ATPase, cell division control protein, putative [Paramecium
           tetraurelia]
 gi|124390561|emb|CAK56103.1| unnamed protein product [Paramecium tetraurelia]
          Length = 632

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   V+L GP G GK+ LA   ++ SR+   +
Sbjct: 406 PPAGVLLWGPPGCGKTLLAKAVANASRANFIA 437



 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 20/76 (26%)

Query: 67  VILVGPSGSGKSCLANIWSD------------KSRSTRFSNIAKSLD--------SILID 106
           ++L G +G GK+ LA                 K+ +   ++++   +            +
Sbjct: 148 ILLTGATGCGKTYLAKAICRDLYQQFKLNIFMKNGAEIVASLSGESEKNIRQLFQQAAQE 207

Query: 107 TRKPVLLEDIDLLDFN 122
               V ++DID++  +
Sbjct: 208 APSLVFIDDIDVIAGD 223


>gi|172056096|ref|YP_001812556.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum
           255-15]
 gi|171988617|gb|ACB59539.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum
           255-15]
          Length = 668

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 69/219 (31%), Gaps = 59/219 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 200 VLLVGPPGTGKTLLARAAAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259

Query: 111 VLLEDIDLLDFN------------DTQLFHII------------------NSIHQYDSSL 140
           + +++ID +               +  L  ++                  N     D +L
Sbjct: 260 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSENEGIIMIAATNRADILDPAL 319

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR-----QIFIDK 195
           L   R       V  PD+  R     V+K+   +      V +K  A R        ++ 
Sbjct: 320 LRPGRFD-RQITVERPDVVGR---EAVLKVHARNKPLDTTVDLKAIAQRTPGFSGADLEN 375

Query: 196 KL--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230
            L  AA I  R +R  +    L + +D      ++   I
Sbjct: 376 LLNEAALIAARTDRDKISIVDLEEAIDRVIAGPAKKSRI 414


>gi|330835721|ref|YP_004410449.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
 gi|329567860|gb|AEB95965.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
           Ar-4]
          Length = 768

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + ++L GP G GK+ LA   ++++ S              +    + L  I  D +K 
Sbjct: 224 PPKGIMLYGPPGVGKTLLAKAVANETESYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 283

Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFP------ 148
               + ++++D +    ++           QL  +++ +    + +++ A   P      
Sbjct: 284 APAIIFIDEVDAIAPKRDEAIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPNAVDPA 343

Query: 149 --------VSWGVCLPDLCSRL 162
                       + LPD   RL
Sbjct: 344 LRRPGRFDREIEIPLPDKQGRL 365



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 497 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 528


>gi|322710449|gb|EFZ02024.1| cell division protease ftsH [Metarhizium anisopliae ARSEF 23]
          Length = 808

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 21/100 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDID 117
           R  +L GP G+GKS L +  + +     +   A S+D   ++        R  VLLEDID
Sbjct: 176 RGYLLHGPPGTGKSSLGSAVAGEFNLDIYIISAPSVDDKTLEELFNSLPGRCVVLLEDID 235

Query: 118 LLDFNDTQ----------LFHIINS----IHQYDSSLLMT 143
            +  +             L  ++N+      Q    L+MT
Sbjct: 236 AIGTDRQGSDKKAKKALSLSGLLNTLDGVASQEGRVLIMT 275


>gi|301756719|ref|XP_002914210.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda
           melanoleuca]
 gi|281347245|gb|EFB22829.1| hypothetical protein PANDA_002073 [Ailuropoda melanoleuca]
          Length = 389

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNLLKVVSSSIVDKYIGESACLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|226314435|ref|YP_002774331.1| ABC transporter ATP binding protein [Brevibacillus brevis NBRC
           100599]
 gi|226097385|dbj|BAH45827.1| probable ABC transporter ATP binding protein [Brevibacillus brevis
           NBRC 100599]
          Length = 227

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 16/61 (26%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V ++GPSGSGKS L +I                L  +   T   V+++  D+   ++T 
Sbjct: 35  FVAIIGPSGSGKSTLLHI----------------LGGVDTPTSGKVIVDQTDMYAMDETA 78

Query: 126 L 126
           L
Sbjct: 79  L 79


>gi|229818436|ref|ZP_04448717.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM
           20098]
 gi|229784306|gb|EEP20420.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM
           20098]
          Length = 692

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 246 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 305

Query: 125 QL 126
            +
Sbjct: 306 AI 307


>gi|206589995|emb|CAQ36956.1| hypothetical transposase (partial sequence) protein [Ralstonia
           solanacearum MolK2]
          Length = 599

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 46/162 (28%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 313 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 367

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 368 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 425

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
              W     D                D      ++   FA R
Sbjct: 426 FTQWATAFAD----------------DQTLTAAMLDMAFASR 451


>gi|156087318|ref|XP_001611066.1| ATPase AAA type domain containing protein [Babesia bovis T2Bo]
 gi|154798319|gb|EDO07498.1| ATPase AAA type domain containing protein [Babesia bovis]
          Length = 707

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P++ ++L GP GSGKS LA   + ++    F   A  L
Sbjct: 187 PTKGILLHGPPGSGKSRLAEAIAGEANCAFFRVAATEL 224



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   ++ S++   S     L +  +   +  +
Sbjct: 462 ILLYGPPGCGKTLLAKAVANGSKANFISVKGPELLNKYVGESERAV 507


>gi|28870511|ref|NP_793130.1| ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28853759|gb|AAO56825.1| ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 440

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R++ +  +  A ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEDRGLGQRKLTLSDEGFAMLMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDIELLQSLLGDSRR 239


>gi|18312141|ref|NP_558808.1| replication factor C large subunit [Pyrobaculum aerophilum str.
           IM2]
 gi|42559512|sp|Q8ZYK3|RFCL_PYRAE RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|18159574|gb|AAL62990.1| replication factor C large subunit [Pyrobaculum aerophilum str.
           IM2]
          Length = 422

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 32/187 (17%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS------NIAKSLDSILIDT---------- 107
           ++ ++L GP G GK+ L +  + + R             A  L  ++             
Sbjct: 56  AKAILLAGPPGVGKTTLVHALAREIRYELIELNASDVRTADRLRQVIGRGLRESSLFGFE 115

Query: 108 RKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTF--PVSWGVCLPDLCSRLK 163
            K VL +++D L   +    L  II  I      ++MTA     P      L D+     
Sbjct: 116 GKMVLFDEVDGLHVKEDKGGLEEIIEIIETAKIPIIMTANNPYDPKFRP--LRDI----- 168

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            + VV +    ++ + +V+ ++        +++    I +    S+      ++ +  + 
Sbjct: 169 -SLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKS---SMGDLRAAINDL-QMY 223

Query: 224 LSRGMGI 230
           LS G  I
Sbjct: 224 LSGGRRI 230


>gi|63054529|ref|NP_593287.2| AAA family ATPase Cdc48 [Schizosaccharomyces pombe 972h-]
 gi|27151477|sp|Q9P3A7|CDC48_SCHPO RecName: Full=Cell division cycle protein 48
 gi|159883922|emb|CAB99275.2| AAA family ATPase Cdc48 [Schizosaccharomyces pombe]
          Length = 815

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 257 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 316

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 317 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 376

Query: 155 L 155
           L
Sbjct: 377 L 377


>gi|313123479|ref|YP_004033738.1| ATP-dependent clp protease ATP-binding subunit clpx [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280042|gb|ADQ60761.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 417

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA I +      R  N+  ++      T    + ED++ +
Sbjct: 112 IALIGPTGSGKTYLAQILA------RILNVPFAIADATTLTEAGYVGEDVENI 158


>gi|296473933|gb|DAA16048.1| Werner helicase interacting protein 1 [Bos taurus]
          Length = 494

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 16/83 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+            ++   + K   + D+     N+ 
Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSI-----RFVTLSATSAKTTDVRDVIKQAQNEK 289

Query: 125 QLF-----------HIINSIHQY 136
           + F           H  N   Q 
Sbjct: 290 RFFKRKTILFIDEIHRFNKSQQD 312


>gi|288924430|ref|ZP_06418417.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f]
 gi|288344222|gb|EFC78764.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f]
          Length = 272

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 31/144 (21%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA---NIWSD 86
           F+      + R D+L H A    V   ++        VIL+GP G GK+ LA    + + 
Sbjct: 92  FNLDHLPSLRR-DVLAHLATGTFVAKAEN--------VILLGPPGIGKTHLAIGLGVKAA 142

Query: 87  KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFNDTQ---LFH 128
           ++  +   + A +  + L    +                ++++++  + F+       F 
Sbjct: 143 QAGCSVLFDTANNWITRLAAAHQAGHLDTELKKIRRYKLIIIDEVGYIPFDQDAANLFFQ 202

Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152
           ++ +      S+L+T+      WG
Sbjct: 203 LV-ASRYEQGSILVTSNLPFGRWG 225


>gi|160934386|ref|ZP_02081773.1| hypothetical protein CLOLEP_03258 [Clostridium leptum DSM 753]
 gi|156867059|gb|EDO60431.1| hypothetical protein CLOLEP_03258 [Clostridium leptum DSM 753]
          Length = 491

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 24/197 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTR-----FSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +I  GPSG GK+ LA+I + ++          +     L  I  +        +  LL
Sbjct: 107 PNLIFYGPSGVGKTTLASIIARQTNRALRKLNGTTAGTADLREIFTEAENTFTAPNGILL 166

Query: 120 DFNDTQLFH------IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             ++ Q F+      ++    +     L+ + T    + V    L SR   +TV +    
Sbjct: 167 YLDEIQYFNKKQQQTLL-EFIENGKITLIASTTENPYFYVYNAIL-SR---STVFEFKTV 221

Query: 174 DDDFLEKVIVKMFA----DR--QIFIDKKLAAYIVQRMERSLVFAEKLVDK--MDNLALS 225
           +   + K + + F+    +R     I+  +  +I       +  A   V+   + + A  
Sbjct: 222 EKAEVAKAVERAFSLLEEERGEGFQIEDGVVGHIALACGGDVRKAMNSVELCVLSSPAAD 281

Query: 226 RGMGITRSLAAEVLKET 242
               IT   A E+ +++
Sbjct: 282 GVRKITLETAKELTQKS 298


>gi|126460414|ref|YP_001056692.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum
           calidifontis JCM 11548]
 gi|126250135|gb|ABO09226.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum calidifontis JCM
           11548]
          Length = 736

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 28/116 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + ++L+GP G+GK+ LA   ++++ +              +      L  I  + +  
Sbjct: 210 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 269

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150
               + +++ID +                 QL  +++ + +    +++ A   P +
Sbjct: 270 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDA 325



 Score = 36.7 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G GK+  A   + +S +   +     L
Sbjct: 498 PPKGILLFGPPGVGKTLFAKAVATESGANFIAVRGPEL 535


>gi|18313875|ref|NP_560542.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum
           str. IM2]
 gi|18161441|gb|AAL64724.1| AAA family ATPase, possible cell division control protein cdc48
           [Pyrobaculum aerophilum str. IM2]
          Length = 738

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 28/116 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + ++L+GP G+GK+ LA   ++++ +              +      L  I  + +  
Sbjct: 210 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 269

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150
               + +++ID +                 QL  +++ + +    +++ A   P +
Sbjct: 270 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDA 325



 Score = 36.7 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G GK+  A   + +S +   +     L
Sbjct: 498 PPKGILLFGPPGVGKTLFAKAVATESGANFIAVRGPEL 535


>gi|50292351|ref|XP_448608.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527920|emb|CAG61571.1| unnamed protein product [Candida glabrata]
          Length = 436

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 213 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 264


>gi|194336865|ref|YP_002018659.1| AAA family ATPase, CDC48 subfamily [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309342|gb|ACF44042.1| AAA family ATPase, CDC48 subfamily [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 715

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 52/204 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + V L GP G+GK+ +    + ++ +   +                 + +I  + +  
Sbjct: 214 PPKGVFLYGPPGTGKTLIVRAVAQETDAYFINISGPEIMGKYYGESEARVRNIFAEAQSH 273

Query: 111 ----VLLEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID +                   QL  +++ +      +++ A   P S  
Sbjct: 274 APSIIFIDEIDAIAPKREDMGGEKQVEKRVVAQLLSLMDGLESRGKVIVIGATNIPNSID 333

Query: 153 VCLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              P L    R      + I  PD     +++      R I + + +           + 
Sbjct: 334 ---PALRRPGRFDREISISI--PDKKGRLEIL--HIHTRGIPLSEDV----------DMS 376

Query: 211 FAEKLVDKM---DNLALSRGMGIT 231
               +       D  AL+R   +T
Sbjct: 377 KIADITHGFVGADLEALAREAAMT 400



 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 51/201 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------D 106
           P + +IL G  G+GK+ LA   + +S     S     + +  I                 
Sbjct: 489 PPKGIILYGKPGTGKTYLAKALASESGVNFISVKGPQILNRFIGESEKGVRELFRLAKQS 548

Query: 107 TRKPVLLEDIDLLD-----------------------------FNDTQLFHIINSIHQYD 137
               + L++ID L                                   +    N I + D
Sbjct: 549 APTILFLDEIDSLAPRRRNDGVESGVIDRVISQFLTEMDGIEELKGVTVLAATNRIDRID 608

Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            +LL + R   + + V LPDL +R     + KI   +    E V +   A++   +    
Sbjct: 609 PALLRSGRFD-LMFEVPLPDLSTR---EMIFKIHTKNMPLKESVSLNALAEKTDNMTGAD 664

Query: 198 AAYIVQRMERSLVFAEKLVDK 218
             +I Q+ +  +V   +L+DK
Sbjct: 665 IQFICQKAK--MVAIRELIDK 683


>gi|125974952|ref|YP_001038862.1| hypothetical protein Cthe_2467 [Clostridium thermocellum ATCC
           27405]
 gi|125715177|gb|ABN53669.1| phage DNA replication protein (predicted replicative helicase
           loader) [Clostridium thermocellum ATCC 27405]
          Length = 278

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 19/100 (19%)

Query: 67  VILVGPSGSGKSCLANIWSD----------KSRSTRFSNIAKSLDS------ILIDTRKP 110
           ++L G  G+GK+  A   ++           +   R SN   +LD         +D+ K 
Sbjct: 127 LLLWGDVGTGKTFFAACIANYLIDRGVPVLMTNFIRLSNALMALDEDRNEYIKSLDSYKL 186

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQ---YDSSLLMTARTF 147
           ++++D+     +D  L  + N I         L++T    
Sbjct: 187 LIIDDLGAERQSDYMLEQVYNIIDSRYKNGQPLIVTTNLP 226


>gi|320528982|ref|ZP_08030074.1| recombination factor protein RarA [Selenomonas artemidis F0399]
 gi|320138612|gb|EFW30502.1| recombination factor protein RarA [Selenomonas artemidis F0399]
          Length = 447

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113
           +I  GP G GK+ LA I + ++++    FS ++  +  I    ++            + +
Sbjct: 56  MIFWGPPGVGKTTLAQIIAARTKAEFITFSAVSGGIKDIRTVMQEAERKRSYGQRVIIFV 115

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ +    L SR     V  +   
Sbjct: 116 DEIHRFNKAQQDAFLPF---VEKGSIVLIGATTENPSFEINGA-LLSR---CRVFVLQGL 168

Query: 174 DDDFLEKVIVKMFA 187
             + + K++++  A
Sbjct: 169 KTEDIRKLLLRAAA 182


>gi|313895502|ref|ZP_07829058.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975628|gb|EFR41087.1| replication-associated recombination protein A [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 444

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113
           +I  GP G GK+ LA I + ++++    FS ++  +  I    ++            + +
Sbjct: 53  MIFWGPPGVGKTTLAQIIAARTKAEFITFSAVSGGIKDIRTVMQEAERKRSYGQRVIIFV 112

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ +    L SR     V  +   
Sbjct: 113 DEIHRFNKAQQDAFLPF---VEKGSIVLIGATTENPSFEINGA-LLSR---CRVFVLQGL 165

Query: 174 DDDFLEKVIVKMFA 187
             + + K++++  A
Sbjct: 166 KTEDIRKLLLRAAA 179


>gi|284929519|ref|YP_003422041.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809963|gb|ADB95660.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 618

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKSNAPCI 257

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 258 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD     +++      R   + K +    I +R       
Sbjct: 318 ------LRPGRFDRQVVVDRPDYAGRREILQVH--SRGKTLSKDVDLDKIARRTP-GFTG 368

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 369 A-DLSNLLNEAAILAARRSLT 388


>gi|212716401|ref|ZP_03324529.1| hypothetical protein BIFCAT_01324 [Bifidobacterium catenulatum DSM
           16992]
 gi|225350934|ref|ZP_03741957.1| hypothetical protein BIFPSEUDO_02509 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|212660654|gb|EEB21229.1| hypothetical protein BIFCAT_01324 [Bifidobacterium catenulatum DSM
           16992]
 gi|225158390|gb|EEG71632.1| hypothetical protein BIFPSEUDO_02509 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 700

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 258 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 317

Query: 125 QL 126
            +
Sbjct: 318 AI 319


>gi|194896198|ref|XP_001978432.1| GG17681 [Drosophila erecta]
 gi|190650081|gb|EDV47359.1| GG17681 [Drosophila erecta]
          Length = 397

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|156050767|ref|XP_001591345.1| hypothetical protein SS1G_07971 [Sclerotinia sclerotiorum 1980]
 gi|154692371|gb|EDN92109.1| hypothetical protein SS1G_07971 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 750

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL          +  +
Sbjct: 639 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTRFSGSDITALAKD 690


>gi|119496553|ref|XP_001265050.1| proteasome regulatory particle subunit Rpt5, putative [Neosartorya
           fischeri NRRL 181]
 gi|119413212|gb|EAW23153.1| proteasome regulatory particle subunit Rpt5, putative [Neosartorya
           fischeri NRRL 181]
          Length = 464

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 250 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 310 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRIDVLDPAL--L 367

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++    ++      R++ +D  +
Sbjct: 368 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMTVDDGV 403


>gi|296163887|ref|ZP_06846541.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1]
 gi|295885868|gb|EFG65832.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1]
          Length = 185

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIW--------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLED 115
           ++LVG  GSGK+ LA             + R     ++A +L+      R       L  
Sbjct: 18  LVLVGGPGSGKTHLATAIGVSGIMHHGKRVRFYSTVDLANALEQEKAQGRAGRIAASLLR 77

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +DL+  ++             LFH+++ ++++ +S+ +T       W 
Sbjct: 78  LDLVILDELGYLPFSQAGGALLFHLLSRLYEH-TSVAVTTNLDFAEWS 124


>gi|262394648|ref|YP_003286502.1| ATPase AAA family [Vibrio sp. Ex25]
 gi|262338242|gb|ACY52037.1| ATPase AAA family [Vibrio sp. Ex25]
          Length = 449

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 66/199 (33%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   +    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIDKAREN--KMAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
                +   + +     DR +          +   +        RM  SL + E L D  
Sbjct: 166 LGQSEISLALDQAINDKDRGLGNIPAHFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223

Query: 220 DNLALSRGMGITRSLAAEV 238
           ++ A      IT  L AEV
Sbjct: 224 EDNA-QGEKEITLKLLAEV 241


>gi|257899569|ref|ZP_05679222.1| AAA ATPase [Enterococcus faecium Com15]
 gi|257837481|gb|EEV62555.1| AAA ATPase [Enterococcus faecium Com15]
          Length = 428

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 24/172 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAY---IVQRMERSLV-FAEKLVDKMDNLA 223
             ++  +     D++  + ++        +  + R+        ++ ++  A
Sbjct: 153 QDIQLAVEHALKDKERGLGQQAIQLDEEALLHLSRATNGDLRSALNGLELAA 204


>gi|207340961|gb|EDZ69150.1| YOR259Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 421

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265


>gi|156844239|ref|XP_001645183.1| hypothetical protein Kpol_1062p33 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115841|gb|EDO17325.1| hypothetical protein Kpol_1062p33 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 434

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            GP G+GK+ LA   + ++ +T     A  L  + I     ++ +
Sbjct: 221 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGAKLVRD 265


>gi|145592539|ref|YP_001154541.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145284307|gb|ABP51889.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum arsenaticum DSM
           13514]
          Length = 731

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 70/203 (34%), Gaps = 37/203 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + ++L+GP G+GK+ LA   ++++ +   +                 L  I  + +  
Sbjct: 212 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 271

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 272 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVVVIGATNRPDA---V 328

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L    +    + I+ PD     +++      R + +   +    +  +      A+ 
Sbjct: 329 DPALRRPGRFDREIWINPPDFKGRYEILQ--IHTRNMPLAPDVDLRKLAEITHGFSGAD- 385

Query: 215 LVDKMDNLAL--SRGMGITRSLA 235
            +  +   A   +    I   L 
Sbjct: 386 -LAALAREAAMSALRRAIQSGLI 407



 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + ++L GP G+GK+ LA   + +S +   +     +                    + 
Sbjct: 487 PPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMA 546

Query: 107 TRKPVLLEDIDLLD 120
               V +++ID L 
Sbjct: 547 APAVVFIDEIDALA 560


>gi|159041123|ref|YP_001540375.1| AAA family ATPase, CDC48 subfamily protein [Caldivirga
           maquilingensis IC-167]
 gi|157919958|gb|ABW01385.1| AAA family ATPase, CDC48 subfamily [Caldivirga maquilingensis
           IC-167]
          Length = 735

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 28/116 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L+GP G+GK+ LA   ++++ +   S                 + +  D    +
Sbjct: 215 PPKGVLLIGPPGTGKTLLAKAVANEADAYFVSINGPEIVSKYYGESEARLREIFDEAKRN 274

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150
               + +++ID +                 QL  +++ + +    +++ A   P +
Sbjct: 275 APAIIFIDEIDSIAPKREEVTGEVEKRIVAQLLTLMDGLQERGQVVVIGATNRPDA 330



 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   +++S +   +
Sbjct: 491 PPKGILLFGPPGTGKTLLAKAVANESGANFIA 522


>gi|320585759|gb|EFW98438.1| aaa family ATPase rvb2 [Grosmannia clavigera kw1407]
          Length = 780

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 16/79 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
            ++ V+L GPSG GK+ +AN  + ++++  F+                NI    ++ +  
Sbjct: 222 SNQSVLLYGPSGCGKTLVANAIAAETKAQFFAVSGPEIIGGVSGESEGNIRNIFEAAIRM 281

Query: 107 TRKPVLLEDIDLLDFNDTQ 125
               + L+DI+ +     Q
Sbjct: 282 APSLIFLDDIEAIAGKQEQ 300


>gi|307207117|gb|EFN84926.1| 26S protease regulatory subunit S10B [Harpegnathos saltator]
          Length = 393

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 222 ------MFNYARDHQ 230


>gi|198427611|ref|XP_002131406.1| PREDICTED: similar to fidgetin-like 1 [Ciona intestinalis]
          Length = 597

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 45/179 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P + ++L GP G+GK+ +    + +S +T FS  A SL S                  I+
Sbjct: 355 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWIGQGEKMVRALFAVASIN 414

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSS-------LLMTARTF 147
               + +++ID L                T+ F     +    ++       L++ A   
Sbjct: 415 QPAVIFIDEIDSLLSQRSDSEHESSRRIKTEFF-----VQLDGATTSSEDRILVVGATNR 469

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
           P        D  +R +    + I LP+D   E++I K+  ++   + ++    +V+R E
Sbjct: 470 PHEI-----DEAARRRLVKRLYIPLPEDGAREQIITKLLQEQSYRMTEEEILSVVKRTE 523


>gi|195999648|ref|XP_002109692.1| hypothetical protein TRIADDRAFT_53969 [Trichoplax adhaerens]
 gi|190587816|gb|EDV27858.1| hypothetical protein TRIADDRAFT_53969 [Trichoplax adhaerens]
          Length = 806

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 48  AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
           A + AV   +       +V +L GP G GK+ LA++ +  +        A    S+ I  
Sbjct: 274 ANQLAVDTQNRP---LKKVALLCGPPGLGKTTLAHVIARHAGYNVLEMNASDDRSVEIFR 330

Query: 108 RKPVLLEDIDLLDFNDTQL 126
           ++      +  +  ++  L
Sbjct: 331 QRIESATQMHSISGDEKGL 349


>gi|156547510|ref|XP_001603936.1| PREDICTED: similar to 26S proteasome regulatory complex ATPase RPT4
           [Nasonia vitripennis]
          Length = 393

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 222 ------MFNYARDHQ 230


>gi|17945503|gb|AAL48804.1| RE23388p [Drosophila melanogaster]
          Length = 397

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|325115271|emb|CBZ50826.1| probable 26S protease regulatory subunit 6B,related [Neospora
           caninum Liverpool]
          Length = 443

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 221 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 272


>gi|315042203|ref|XP_003170478.1| hypothetical protein MGYG_07723 [Arthroderma gypseum CBS 118893]
 gi|311345512|gb|EFR04715.1| hypothetical protein MGYG_07723 [Arthroderma gypseum CBS 118893]
          Length = 814

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 252 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSID-- 369

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 370 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 409


>gi|296084940|emb|CBI28349.3| unnamed protein product [Vitis vinifera]
          Length = 377

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P R  +L GP G+GKS LA   + ++ ST FS  +  L S                    
Sbjct: 106 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARES 165

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    H     L++ A   P +  
Sbjct: 166 APSIIFIDEIDSLCGQRGESNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD 225

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 226 QAIRRRFDKRIYIPLPDLKAR 246


>gi|308233642|ref|ZP_07664379.1| membrane protease FtsH catalytic subunit [Atopobium vaginae DSM
           15829]
 gi|328944405|ref|ZP_08241867.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
 gi|327490989|gb|EGF22766.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
          Length = 717

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 43/199 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------DTR 108
           R V+LVG  G+GK+ LA   + ++    FS        + +                   
Sbjct: 283 RGVLLVGAPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKQAKHAAP 342

Query: 109 KPVLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++   + D+ +L+ A   P     
Sbjct: 343 SIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFAESDAVILIAATNRPDILDP 402

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V++  PD    + ++     ++ +  D +L A  + ++     
Sbjct: 403 AL------LRPGRFDRRVQVDPPDIKGRKTILEVHAQNKPLAPDVRLGA--LAKLTPGFT 454

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  AL     
Sbjct: 455 GA-DLANLLNEAALLTARR 472


>gi|300778485|ref|ZP_07088343.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum
           ATCC 35910]
 gi|300503995|gb|EFK35135.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum
           ATCC 35910]
          Length = 368

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 42/206 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDI-DLLD 120
           ++ ++  GP G GK+  A I + K        S    + +   +D      ++DI +L+D
Sbjct: 39  AQALLFCGPRGVGKTTCARILARKINEKDGSVSEDGFAYNIYELDAASNNSVDDIRELID 98

Query: 121 ---------------FNDTQLFH--IINSIHQYDSSLLMTARTFPVSWGVCL-------- 155
                           ++  +      N+        L T    P      L        
Sbjct: 99  QVRFAPQVGKYKVYIIDEVHMLSSAAFNAF-------LKTLEEPPAHAIFILATTEKHKI 151

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P + SR     +        + ++  +  +     I  +      I Q+ +        
Sbjct: 152 IPTILSR---CQIYDFKRIVIEDIQNHLRNIAEKENIRYEDDALYLIAQKAD---GALRD 205

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLK 240
            +   D L+      IT + AAEVL 
Sbjct: 206 ALSIFDRLSTFSQRNITLAKAAEVLN 231


>gi|195475210|ref|XP_002089877.1| GE19324 [Drosophila yakuba]
 gi|194175978|gb|EDW89589.1| GE19324 [Drosophila yakuba]
          Length = 801

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 50/166 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181
                       + +PD   RL+   V++I      L DD  LE++
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI 396



 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|161485694|ref|NP_637341.2| recombination factor protein RarA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|162017102|ref|YP_243284.2| recombination factor protein RarA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991669|ref|YP_001903679.1| recombination factor protein RarA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733429|emb|CAP51630.1| ATPase [Xanthomonas campestris pv. campestris]
          Length = 456

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 67/200 (33%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125
           +IL GP G GK+ LA + +  + +  F  I+  L  +    +  VL E          T 
Sbjct: 62  MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLPDVRQ--VLAEAAQRFASGRRTV 118

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 175

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     A+R +      + +     I    +  +  A  L++    LA 
Sbjct: 176 PQDIVEALQRAL---HDAERGLGQETIQVSEASLLEIASAADGDVRRALTLLEIAAELAT 232

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 233 GEGGEITPRTLLQVLADRTR 252


>gi|94498172|ref|ZP_01304734.1| transposition helper protein [Sphingomonas sp. SKA58]
 gi|94422452|gb|EAT07491.1| transposition helper protein [Sphingomonas sp. SKA58]
          Length = 223

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 35/164 (21%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----- 83
            F F    GI +  LL   ++      I+S        ++L G SG+GK+          
Sbjct: 33  TFDFDAAPGIRKPHLL---SLAAGDDWIES-----GGNLLLFGQSGTGKTHAVAAIGHAL 84

Query: 84  --------WSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFND---TQLF 127
                   +   +   +    A+   S+      +D    ++L+D+  +  +    + LF
Sbjct: 85  IDTGRRVLFCSTTDMVQKLQSARRDLSLPAMLDKLDKFDLIVLDDLSYVRKDQVETSALF 144

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            +I +      SL +TA     +W    PD      A TV  I 
Sbjct: 145 ELI-AHRYERHSLAITANQPFSAWDNVFPD-----PAMTVAAID 182


>gi|26989076|ref|NP_744501.1| AFG1-family ATPase [Pseudomonas putida KT2440]
 gi|24983905|gb|AAN67965.1|AE016429_1 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 375

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 23/110 (20%)

Query: 65  RVVILVGPSGSGKSCL----------------------ANIWSDKSRSTRFSNIAKSLDS 102
           R + L G  G GKS L                      A +     R     +   +   
Sbjct: 84  RSLYLYGSVGRGKSWLLDGFFQAVPIAAKLRLHFHDFFARLHQGMHRHRALDDALGATLD 143

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151
            L+   + +  ++  + D  D  L   + N++      LL+T+   P   
Sbjct: 144 ELVGGCRVLCFDEFHVHDIGDAMLLTRLFNALFARGVYLLVTSNYAPEGL 193


>gi|68062022|ref|XP_673015.1| 26S proteasome regulatory subunit 4 [Plasmodium berghei strain
           ANKA]
 gi|56490551|emb|CAH97888.1| 26S proteasome regulatory subunit 4, putative [Plasmodium berghei]
          Length = 289

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 219 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 270


>gi|66357072|ref|XP_625714.1| 26S proteasome regulatory subunit S4 like AAA ATpase
           [Cryptosporidium parvum Iowa II]
 gi|67592589|ref|XP_665653.1| 26S proteasome AAA-ATPase subunit RPT2a [Cryptosporidium hominis
           TU502]
 gi|46226649|gb|EAK87628.1| 26S proteasome regulatory subunit S4 like AAA ATpase
           [Cryptosporidium parvum Iowa II]
 gi|54656441|gb|EAL35425.1| 26S proteasome AAA-ATPase subunit RPT2a [Cryptosporidium hominis]
          Length = 445

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 223 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 274


>gi|328354365|emb|CCA40762.1| 26S protease regulatory subunit S10B [Pichia pastoris CBS 7435]
          Length = 454

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A ++    I     ++ E
Sbjct: 231 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 282


>gi|325183421|emb|CCA17882.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 396

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +T    +A ++    I     ++ E
Sbjct: 173 PPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARIIRE 224


>gi|260589707|ref|ZP_05855620.1| replication-associated recombination protein A [Blautia hansenii
           DSM 20583]
 gi|331083138|ref|ZP_08332255.1| hypothetical protein HMPREF0992_01179 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539947|gb|EEX20516.1| replication-associated recombination protein A [Blautia hansenii
           DSM 20583]
 gi|330405140|gb|EGG84677.1| hypothetical protein HMPREF0992_01179 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 439

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 72/188 (38%), Gaps = 37/188 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLL 119
             VI  GP G+GK+ LA + ++ + +            K ++ ++ + ++ +       +
Sbjct: 53  GSVIFYGPPGTGKTTLAKVIANTTSARFKQINATVAGKKDMEEVVKEAQQHL------GM 106

Query: 120 DFNDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
               T LF    H  N           +  + +L+ A T    + V    L SR   + V
Sbjct: 107 YGKKTILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNSA-LLSR---SIV 162

Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
            ++   + + + K++ +  +D  R +      + +   +++    + +   A   ++ ++
Sbjct: 163 FELKPLEKEDICKILERAVSDCERGMGSYHAVLHEDAKSFLA---DIAGGDARAALNALE 219

Query: 221 NLALSRGM 228
              L+   
Sbjct: 220 LGILTTQK 227


>gi|239832095|ref|ZP_04680424.1| recombination factor protein RarA [Ochrobactrum intermedium LMG
           3301]
 gi|239824362|gb|EEQ95930.1| recombination factor protein RarA [Ochrobactrum intermedium LMG
           3301]
          Length = 438

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 63/182 (34%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 49  ASGSLGSMIFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKKVFEAA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +     +R + +D++  A +++  +     A  L +++  
Sbjct: 160 -ARVLTFHPHDGESIATLLTRAEEQEERPLPLDEEARASLIRMADGDGRAALTLGEEVWR 218

Query: 222 LA 223
            A
Sbjct: 219 AA 220


>gi|150399700|ref|YP_001323467.1| proteasome-activating nucleotidase [Methanococcus vannielii SB]
 gi|166199294|sp|A6UQT3|PAN_METVS RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|150012403|gb|ABR54855.1| 26S proteasome subunit P45 family [Methanococcus vannielii SB]
          Length = 407

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++ ++    +   L    I     ++ +
Sbjct: 181 PPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRD 232


>gi|119872171|ref|YP_930178.1| replication factor C large subunit [Pyrobaculum islandicum DSM
           4184]
 gi|150415668|sp|A1RSA3|RFCL_PYRIL RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|119673579|gb|ABL87835.1| replication factor C large subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 423

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 71/187 (37%), Gaps = 32/187 (17%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD--------------KSRSTRFSNIAKSLDSILIDTRK 109
           ++ V+L GP G GK+ + +  +               ++       + + L    +   +
Sbjct: 56  AKAVLLAGPPGIGKTTIVHALAREIKYELIELNASDVRTGERIKQVVGRGLREASLFGYE 115

Query: 110 --PVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTF--PVSWGVCLPDLCSRLK 163
              VL +++D L   +    L  I+  I      ++MTA     P      L D+     
Sbjct: 116 GKLVLFDEVDGLHVKEDLGGLETIVEIIEIAKVPVIMTANNPYDPKFRP--LRDI----- 168

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            A V+ +    +D + +V+ ++ A+     +++    I +    SL      ++ +  + 
Sbjct: 169 -ALVINLKRLSEDDVVEVLRRICANEGAKCEEEALRSIAKS---SLGDLRAAINDL-QMY 223

Query: 224 LSRGMGI 230
           LS G  I
Sbjct: 224 LSSGKKI 230


>gi|92116397|ref|YP_576126.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
 gi|91799291|gb|ABE61666.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
          Length = 287

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R  +LVG +G+GK+ LA   +        + R     ++   L+    + R+  + E +
Sbjct: 98  QRNAVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRIAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 206


>gi|55380068|ref|YP_137918.1| proteasome-activating nucleotidase [Haloarcula marismortui ATCC
           43049]
 gi|55232793|gb|AAV48212.1| proteasome-activating nucleotidase 2 [Haloarcula marismortui ATCC
           43049]
          Length = 404

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  +L    
Sbjct: 181 PPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLFELARQE 240

Query: 123 DTQL 126
           +  +
Sbjct: 241 EPAV 244


>gi|84998232|ref|XP_953837.1| transitional endoplasmic reticulum ATPase (CDC48 ) [Theileria
           annulata]
 gi|65304834|emb|CAI73159.1| transitional endoplasmic reticulum ATPase (CDC48 homologue),
           putative [Theileria annulata]
          Length = 822

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 62/173 (35%), Gaps = 44/173 (25%)

Query: 63  PSRVVILVGPSG---------SGKSCLANIWSDKSRSTRF----------------SNIA 97
           P R V+L GP G         SGK+ +A   ++++ +  F                SN+ 
Sbjct: 252 PPRGVLLYGPPGTILSFLYYRSGKTLIARAVANETGAFFFLINGPEVMSKMAGEAESNLR 311

Query: 98  KSLDSILIDTRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTAR 145
           ++      +    + +++ID +                 QL  +++ +      +++ A 
Sbjct: 312 RAFAEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIAAT 371

Query: 146 TFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                     P L  R  +    + I +PDD    +++      R + +D ++
Sbjct: 372 ---NRQNSIDPALR-RFGRFDKEIDIGVPDDQGRLEIL--KIHTRNMKLDPQV 418



 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +  +   S     L ++     +  + E  D  
Sbjct: 534 PSRGVLFYGPPGCGKTLLAKAVASECSANFISVKGPELLTMWFGESEANVREVFDKA 590


>gi|298207712|ref|YP_003715891.1| putative ATPase, AAA family protein [Croceibacter atlanticus
           HTCC2559]
 gi|83850349|gb|EAP88217.1| putative ATPase, AAA family protein [Croceibacter atlanticus
           HTCC2559]
          Length = 425

 Score = 41.3 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 35/202 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +I  GP G GK+ LANI +++S                       AK  D +      
Sbjct: 40  PSLIFWGPPGVGKTTLANIIANESDRPFYSLSAINSGVKDVREVIEKAKKSDGLFSSKNP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L        +     L+ A T   S+ V +P L SR     V 
Sbjct: 100 LLFIDEIHRFSKSQQDSLL----GAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151

Query: 169 KISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            +     + L ++I K        + + I + +     +++           + + + N 
Sbjct: 152 VLKPFSKEDLLQLINKAIIEDPYISKKNIELKE--TEALLRLSGGDARKLLNIFELLVNT 209

Query: 223 ALSRGMGITRSLAAEVLKETQQ 244
           + S  + IT      VLK  QQ
Sbjct: 210 SASEKVVITNDF---VLKNVQQ 228


>gi|317153252|ref|YP_004121300.1| MgsA AAA+ ATPase-like protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943503|gb|ADU62554.1| MgsA AAA+ ATPase-like protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 407

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120
             ++L GP G GKS LA + +  +   S R S     L ++   +     ++L+++    
Sbjct: 43  PSLLLFGPPGCGKSTLAMLLARLTGKKSLRLSAPEAGLTALRKQLPGHDILILDELHRFS 102

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                 F  I    +     L+   T   S+ V    L SRL
Sbjct: 103 KAQQDFFLPI---LESGEITLLATTTENPSFSVTRQ-LLSRL 140


>gi|261420426|ref|YP_003254108.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61]
 gi|319768093|ref|YP_004133594.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52]
 gi|261376883|gb|ACX79626.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61]
 gi|317112959|gb|ADU95451.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52]
          Length = 251

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 67  VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVL------LEDI 116
           V+L+G  G+GK+ LA         +    RF  +A  +  +    +   L      ++  
Sbjct: 96  VLLLGSPGTGKTHLATALGIQACQQGHEVRFFRVADLVAQLEEALKNGTLGRLKRSIDAC 155

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +LL  ++             LFHII   ++   S+++T+      W     D  +RL AA
Sbjct: 156 ELLILDELGYVPFQKQGSELLFHIIADCYER-KSVMVTSNLEFGQWDRVFGD--NRLTAA 212

Query: 166 TVVKI 170
            V ++
Sbjct: 213 LVDRL 217


>gi|311748366|ref|ZP_07722151.1| ATPase, AAA family [Algoriphagus sp. PR1]
 gi|126576875|gb|EAZ81123.1| ATPase, AAA family [Algoriphagus sp. PR1]
          Length = 420

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 70/167 (41%), Gaps = 21/167 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------TRFSNIAKSLDSILIDTRKPVLLED 115
             +IL GP G GK+ +ANI +++ ++         +   +I + ++         + +++
Sbjct: 41  PSLILWGPPGVGKTTIANIIANEIKAPFYTLSAISSGVKDIREVIEKAKFQMGVVLFIDE 100

Query: 116 IDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           I   + +    L        +     L+ A T   S+ V    L SR +  T+  +  P+
Sbjct: 101 IHRFNKSQQDALL----GAVEKGIIRLIGATTENPSFEVNAA-LLSRCQVFTLNSLGKPE 155

Query: 175 -DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME----RSLVFAEKLV 216
            +  + + + K    +++ ++ K    ++ R+     R L+   ++V
Sbjct: 156 LEAMVHQALEKDVDLKKLNVELKETDALL-RISGGDGRKLLNLLEIV 201


>gi|150399940|ref|YP_001323707.1| ATPase central domain-containing protein [Methanococcus vannielii
           SB]
 gi|150012643|gb|ABR55095.1| AAA ATPase central domain protein [Methanococcus vannielii SB]
          Length = 371

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 34/156 (21%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSIL 104
            W  + ++  GP G+GK+ LA   + ++    +   A  L                +  L
Sbjct: 153 EWAPKNILFYGPPGTGKTLLARALATETDVPLYLIKATELIGDHVGDGSKQIQSLYEEAL 212

Query: 105 IDTRKPVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
            +    + ++++D +  +                L   ++ I   +  + + A   P   
Sbjct: 213 ENAPCIIFIDELDAIALSRQFQSLRGDVSEVVNALLTELDGIKSNEGIVTIAATNNPEML 272

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
              +    SR +     K+  PDD    K++     
Sbjct: 273 DSAI---RSRFEEEIEFKM--PDDSERLKIMELYAE 303


>gi|44355275|gb|AAS47025.1| proteasome 26S ATPase subunit 1 [Oreochromis mossambicus]
          Length = 256

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 57  PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 108


>gi|194858161|ref|XP_001969115.1| TER94 [Drosophila erecta]
 gi|27374245|gb|AAO01004.1| CG2331-PA [Drosophila erecta]
 gi|190660982|gb|EDV58174.1| TER94 [Drosophila erecta]
          Length = 801

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 50/166 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + +++ID +                 QL  +++ + +    ++M A   P      
Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353

Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181
                       + +PD   RL+   V++I      L DD  LE++
Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI 396



 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563


>gi|15611466|ref|NP_223117.1| recombination factor protein RarA [Helicobacter pylori J99]
 gi|4154931|gb|AAD05978.1| putative [Helicobacter pylori J99]
          Length = 391

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 21/179 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLE 114
                 GP G GK+ LA I +   +    S  A       +            +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARSLKRPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + + +L++ A T   ++ +    + SR   +   +++   
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKNRALILGASTQDPNYSLSHA-IRSR---SFTFELTPLK 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233
              L+++  K     +  I+     Y++     S   A  L++ +D L+      IT  
Sbjct: 151 KSDLDRLCDKALTLLKKQIEPGAKTYLLNN---SAGDARALLNLLD-LSAKIENPITLK 205


>gi|20094314|ref|NP_614161.1| proteasome-activating nucleotidase [Methanopyrus kandleri AV19]
 gi|22096006|sp|Q8TX03|PAN_METKA RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|19887363|gb|AAM02091.1| ATP-dependent 26S proteasome regulatory subunit [Methanopyrus
           kandleri AV19]
          Length = 436

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   ++ + +T     A  L    I     ++ E
Sbjct: 212 PPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRE 263


>gi|332289880|ref|YP_004420732.1| Type II/IV secretion system protein [Gallibacterium anatis UMN179]
 gi|330432776|gb|AEC17835.1| Type II/IV secretion system protein [Gallibacterium anatis UMN179]
          Length = 469

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 65/205 (31%), Gaps = 43/205 (20%)

Query: 14  DKQKNDQPKNKEEQLFFSF-PRCLGISRDDLLV-HSAIEQAVRLIDSWPSWPSRVVILVG 71
           D + +  P    E++     P       DD        EQAV L     S P  ++++ G
Sbjct: 211 DIRLSSLPTQYGEKIVLRLQPNTPVF--DDFTELGMTNEQAV-LFRQALSQPQGLILVTG 267

Query: 72  PSGSGKS-------CLAN-------------------IWSDKSRSTRFSNIAKSLDSILI 105
           P+GSGKS          N                   I   ++ +      A  L S L 
Sbjct: 268 PTGSGKSLTLYSGLHFLNQESRHILTAEDPIELQLNGIIQTQANAAIGLTFATLLRSFLR 327

Query: 106 DTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
                +++ +I   +  +  L        Q    +L T  T      +      SRL+  
Sbjct: 328 QDPDVIMVGEIRDQETAEIAL-----RAAQTGHLVLSTLHTNTAIGAI------SRLQQL 376

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQ 190
            + +    ++  L  V  ++   R 
Sbjct: 377 GIAQ-HELENSLLLVVAQRLVRKRC 400


>gi|225022112|ref|ZP_03711304.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945045|gb|EEG26254.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 977

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 49/206 (23%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQARENSP 260

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     +  +LM A   P     
Sbjct: 261 CIIFVDEIDAVGRQRGSGMGGGHDEREQTLNQLLVEMDGFGDREGVILMAATNRPDILDQ 320

Query: 154 CL--------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197
            L              PDL  R     V     P   D  L  +  +        +   L
Sbjct: 321 ALLRPGRFDRQIPVTNPDLKGREAILKVHAEGKPFAKDVDLAALARRTAGMSGADLANVL 380

Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221
             AA +  R+  +++ A+ L +  D 
Sbjct: 381 NEAALLTARIGGNVITADALEEATDR 406


>gi|224015872|ref|XP_002297581.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220967748|gb|EED86130.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 500

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 36/191 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR---- 108
           R ++L GP G+GK+ LA   + ++                    AK +  +    +    
Sbjct: 52  RGLLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEVYVGLGAKRIRELFEAAKQKSP 111

Query: 109 KPVLLEDIDLLDF-----NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGVCLP 156
             + +++ID +       + + L   +N +        + +  +++ A  F  S    L 
Sbjct: 112 SIIFIDEIDAVGGTRKLKDQSALKMTLNELLVQMDGFDENNGIIVIGATNFAESLDSAL- 170

Query: 157 DLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
            L   R   + VV +  PD    ++++    A     +   +   I+ R       A  L
Sbjct: 171 -LRPGRFDKSVVVPL--PDVGGRKEILEMYAAK--TKVSDDVDLGILARGTTGFSGA-DL 224

Query: 216 VDKMDNLALSR 226
            + M+  AL  
Sbjct: 225 YNLMNQAALKA 235


>gi|209875885|ref|XP_002139385.1| ATPase, AFG1 family protein [Cryptosporidium muris RN66]
 gi|209554991|gb|EEA05036.1| ATPase, AFG1 family protein [Cryptosporidium muris RN66]
          Length = 473

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 41/110 (37%), Gaps = 25/110 (22%)

Query: 67  VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDTRKPVLLEDI----- 116
           + + G  G GK+ L +++ +     + +   F    K ++  +   R+ +  + I     
Sbjct: 83  LYIYGEPGLGKTMLMDLFYETIDTTRKKRIHFHEFIKDINDQIYHARQRMCTDSITFVAN 142

Query: 117 ------DLLDFNDTQLFH---------IINSIHQYDSSLLMTARTFPVSW 151
                 D++  ++ Q+ H         + N +      ++MT+   P   
Sbjct: 143 EIKKTTDIICIDEFQIIHITDAMIIKRLFNILFDLGIVVIMTSNRPPNDL 192


>gi|195398707|ref|XP_002057962.1| GJ15827 [Drosophila virilis]
 gi|194150386|gb|EDW66070.1| GJ15827 [Drosophila virilis]
          Length = 397

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|114800296|ref|YP_761330.1| recombination factor protein RarA [Hyphomonas neptunium ATCC 15444]
 gi|114740470|gb|ABI78595.1| ATPase, AAA family [Hyphomonas neptunium ATCC 15444]
          Length = 436

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 28/170 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ +A + + ++       S I   +  +     K     +        T
Sbjct: 55  MILWGPPGVGKTTIARLLAQETDLEFEALSAIFSGVKDLRAAFEKA----EARRRVGKGT 110

Query: 125 QLF----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q            +L+      P          L SR     V+ +
Sbjct: 111 LLFVDEIHRFNRSQQDGFLPFVESGTVTLVGATTENPSFELNGA---LLSR---CQVMVL 164

Query: 171 SLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
              +DD L +++ +      R++         +++  +    +   LV++
Sbjct: 165 RRLEDDDLRELMARAERAMGRRLPAMPDAREALIRMADGDGRYLLNLVEQ 214


>gi|6434958|gb|AAF08391.1|AF145310_1 26S proteasome regulatory complex subunit p42D [Drosophila
           melanogaster]
          Length = 390

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 167 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 218

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 219 ------MFNYARDHQ 227


>gi|112983322|ref|NP_001037003.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori]
 gi|83423461|dbj|BAE54254.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori]
 gi|95102992|gb|ABF51437.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori]
          Length = 805

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 75/203 (36%), Gaps = 56/203 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 235 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 294

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148
           +   + ++++D +                 QL  +++ + +    ++M A   P      
Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 354

Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLP---DDDFLEKVIVKMFADRQIFIDKKL 197
                       + +PD   RL+    +        DD  LE++     A+    +   L
Sbjct: 355 LRRFGRFDREIDIGIPDATGRLE-ILRIHTKNMKLGDDVDLEQI----AAESHGHVGADL 409

Query: 198 AAYIVQRMERSLVFAEKLVDKMD 220
           A+        S    +++ +KMD
Sbjct: 410 ASLC------SEAALQQIREKMD 426



 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 564


>gi|34483337|emb|CAE10335.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 365

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 73/197 (37%), Gaps = 29/197 (14%)

Query: 55  LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL-------- 104
           +I+             GP G+GK+  A I + +       F+     ++ +         
Sbjct: 1   MIEH---GSLPHAFFYGPPGTGKTSAAKIIAKRLDRPFALFNATTFKIEELRSYLKEYKN 57

Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
              +  + ++++  L  N  ++      + +   ++++ A T    + +    + SR   
Sbjct: 58  ALLKPLLFIDEVHRLSKNQQEVLLP---LMENHEAIIIGASTENPYFAMTGA-IRSR--- 110

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLA 223
           + + +        LE ++ ++  +  I +D     Y+++  E     A  +++ +D   +
Sbjct: 111 SMLFEFKPLGKKELEILLERVCENHSILLDNSARDYLLRSSE---GDARAMLNLLDCAYS 167

Query: 224 LSRGMGITRSLAAEVLK 240
           L         L+ E LK
Sbjct: 168 LGES-----PLSLETLK 179


>gi|325661833|ref|ZP_08150454.1| hypothetical protein HMPREF0490_01190 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325471811|gb|EGC75028.1| hypothetical protein HMPREF0490_01190 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 1021

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 19/69 (27%)

Query: 30 FSF-PRCLGISRDD-----LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
          F F P     + ++      +V+ + +              + +++ G SG+GKS L   
Sbjct: 30 FEFVPTSEKYTSEEDIYKKFIVNPSNK-------------HQFIVVYGQSGTGKSHLIRW 76

Query: 84 WSDKSRSTR 92
          +  + ++ R
Sbjct: 77 FEARYKADR 85


>gi|309789629|ref|ZP_07684210.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6]
 gi|308228365|gb|EFO82012.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6]
          Length = 462

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 64/200 (32%), Gaps = 40/200 (20%)

Query: 55  LIDS--WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++D     +  +R + L GP G+GK+ +A   ++          A  +D  +I      +
Sbjct: 168 MLDKIGPAANSARSLFLYGPPGNGKTTIAEGIANLLGGYILIPYAVEIDGQIIK-----I 222

Query: 113 LEDIDLLDFNDTQLFHIINSIHQY--DSSLLMTARTFP-VSW------------GVCLPD 157
            + ++       Q+ H  N +      +    T  TFP   W             + L  
Sbjct: 223 FDPLNHQVVQQNQVGH--NEVAAAFPGAPARPTGSTFPDARWLVCKRPQVVVGGELILEQ 280

Query: 158 LCSRLKAATVVKISLPDDDFLEK---VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L   L    VVKI              ++  F  ++      L  +IV            
Sbjct: 281 LE--LIFDPVVKIYEAPFQLKANGGLFLIDDFGRQKCSPKDLLNRWIVP----------- 327

Query: 215 LVDKMDNLALSRGMGITRSL 234
           L  K D LAL  G  +    
Sbjct: 328 LEKKFDYLALQTGKKLQVPF 347


>gi|268680460|ref|YP_003304891.1| ATPase AAA [Sulfurospirillum deleyianum DSM 6946]
 gi|268618491|gb|ACZ12856.1| AAA ATPase central domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 806

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKS--------RSTRFSNIAKSLDSILIDTRKP--VL 112
           P + +IL GP+G GK  LA  ++ ++         +  F             +  P  V+
Sbjct: 405 PPKGMILYGPAGMGKKLLARAFAHEADMPYIVLRDADLFDGAKIRKAYAQAYSSAPAIVI 464

Query: 113 LEDIDLLDF 121
           LEDID+   
Sbjct: 465 LEDIDVQGI 473


>gi|291457316|ref|ZP_06596706.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM
           20213]
 gi|291381151|gb|EFE88669.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM
           20213]
          Length = 698

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 252 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 311

Query: 125 QL 126
            +
Sbjct: 312 AI 313


>gi|221195854|ref|ZP_03568907.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626]
 gi|221184328|gb|EEE16722.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626]
          Length = 631

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 44/141 (31%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R  +LVGP G+GK+ +A   + ++    F         + +                   
Sbjct: 207 RGALLVGPPGTGKTLIAKAVAGEAGVPFFQIAGSEFVEMFVGRGAAKVRDLFKQANEKAP 266

Query: 111 --VLLEDIDLLDF---------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW--- 151
             + +++ID +           ++      QL   ++    +   +++ A   P +    
Sbjct: 267 CIIFIDEIDAVGKRRDAPLNTNDEREQTLNQLLSEMDGFDNHKGIVVLAATNRPETLDQA 326

Query: 152 -----------GVCLPDLCSR 161
                       V LPDL  R
Sbjct: 327 LLRPGRFDRRIPVELPDLAGR 347


>gi|242767242|ref|XP_002341331.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218724527|gb|EED23944.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 740

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ LAN ++        S  A S+ S +    +  L E  D  
Sbjct: 207 PPRGVLLHGPPGCGKTMLANAFAADLGVPFISISAPSVVSGMSGESEKALREHFDEA 263



 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++SR+   S
Sbjct: 517 VLLWGPPGCGKTLLAKAVANESRANFIS 544


>gi|171741153|ref|ZP_02916960.1| hypothetical protein BIFDEN_00220 [Bifidobacterium dentium ATCC
           27678]
 gi|283455478|ref|YP_003360042.1| cell division protein [Bifidobacterium dentium Bd1]
 gi|306823451|ref|ZP_07456826.1| ATP-dependent metalloprotease FtsH [Bifidobacterium dentium ATCC
           27679]
 gi|309802710|ref|ZP_07696814.1| ATP-dependent metallopeptidase HflB [Bifidobacterium dentium
           JCVIHMP022]
 gi|171276767|gb|EDT44428.1| hypothetical protein BIFDEN_00220 [Bifidobacterium dentium ATCC
           27678]
 gi|283102112|gb|ADB09218.1| ftsH Cell division protein [Bifidobacterium dentium Bd1]
 gi|304553158|gb|EFM41070.1| ATP-dependent metalloprotease FtsH [Bifidobacterium dentium ATCC
           27679]
 gi|308220774|gb|EFO77082.1| ATP-dependent metallopeptidase HflB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 688

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 246 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 305

Query: 125 QL 126
            +
Sbjct: 306 AI 307


>gi|170720977|ref|YP_001748665.1| AFG1 family ATPase [Pseudomonas putida W619]
 gi|169758980|gb|ACA72296.1| AFG1-family ATPase [Pseudomonas putida W619]
          Length = 361

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 24/125 (19%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----------------------ANIWSDK 87
             A +L    P    R + L G  G GKS L                      A +    
Sbjct: 51  AMAEQLA-RLPGGEPRSLYLYGSVGRGKSWLLDGFFQAVPIEAKKRLHFHDFFARLHQGM 109

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTART 146
                  +   +    L+   + +  ++  + D  D  L   + N++      LL+T+  
Sbjct: 110 HCHRLLDDALGATLDALLGDCQVLCFDEFHVHDIGDAMLLTRLFNALFARGIFLLVTSNY 169

Query: 147 FPVSW 151
            P   
Sbjct: 170 APEGL 174


>gi|50553670|ref|XP_504246.1| YALI0E21868p [Yarrowia lipolytica]
 gi|49650115|emb|CAG79841.1| YALI0E21868p [Yarrowia lipolytica]
          Length = 410

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 40/159 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +    + A ++    I                 
Sbjct: 187 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFGYAKEH 246

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  +++D +                  L  ++N +        + ++ A   P + 
Sbjct: 247 EPCIIFMDEVDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDYLGKTKVIMATNRPDTL 306

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFA 187
              L      L+A  +   ++I LP++    +V     A
Sbjct: 307 DPAL------LRAGRLDRKIEIPLPNEAGRLEVFKIHAA 339


>gi|328853328|gb|EGG02467.1| hypothetical protein MELLADRAFT_38533 [Melampsora larici-populina
           98AG31]
          Length = 701

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 10/55 (18%)

Query: 63  PSRVVILVGPSGSGKSC-LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           P+ + ++ GP G+GK+  L +I          S +    D ILI     + +++I
Sbjct: 233 PAPITLVFGPPGTGKTHTLVSI---------ISALHARGDRILIAAASNLAIDNI 278


>gi|156139599|gb|ABU51104.1| unknown [uncultured bacterium Bio7]
          Length = 262

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R  +LVG +G+GK+ LA   +        + R     ++   L+    + R+  + E +
Sbjct: 73  QRNAVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRIAEHL 132

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 133 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 181


>gi|170087590|ref|XP_001875018.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650218|gb|EDR14459.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 817

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 301 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 359 -PALR-RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLAEDV 398



 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G+GK+ LA   +++  +   S     L ++     +  + +  D  
Sbjct: 514 PSKGVLFYGPPGTGKTLLAKAIANECNANFISIKGPELLTMWFGESEANVRDVFDKA 570


>gi|159897963|ref|YP_001544210.1| ATPase central domain-containing protein [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891002|gb|ABX04082.1| AAA ATPase central domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 416

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 46/135 (34%), Gaps = 35/135 (25%)

Query: 61  SWPSRVVILVGPSGSGKSC----LANI------WSDKSRSTRFSNIAKSLDSILIDTRKP 110
           +W  R +ILVGP G+GK+     L N       +     +   +N A          R  
Sbjct: 198 AW-KRGIILVGPPGNGKTHMIKGLLNALDYPCLYVKSFDAQYSTNNANIRAVFDRARRSA 256

Query: 111 ---VLLEDIDLLDFNDTQLFHI-----INSIHQYDSSLLMTARTF----PVSWG------ 152
              V+LED+D L  +  + F +      N+       LL T        P          
Sbjct: 257 PCIVVLEDLDSLINDTNRAFFLNEVDGFNA--NQGVVLLATTNHPEDIDPAIMNRPSRFD 314

Query: 153 ----VCLPDLCSRLK 163
                 LP+L  RL 
Sbjct: 315 RKYYFSLPELAERLA 329


>gi|119195029|ref|XP_001248118.1| hypothetical protein CIMG_01889 [Coccidioides immitis RS]
 gi|303310771|ref|XP_003065397.1| Vacuolar protein sorting-associated protein VPS4 , putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240105059|gb|EER23252.1| Vacuolar protein sorting-associated protein VPS4 , putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320034730|gb|EFW16673.1| vacuolar protein sorting factor [Coccidioides posadasii str.
           Silveira]
          Length = 433

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 163 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 213 -KQLF---NMARENKPAIIF 228


>gi|85715553|ref|ZP_01046534.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85717738|ref|ZP_01048669.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695444|gb|EAQ33371.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85697748|gb|EAQ35624.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 270

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 81  QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 140

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 141 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 189


>gi|326794298|ref|YP_004312118.1| PhoH family protein [Marinomonas mediterranea MMB-1]
 gi|326545062|gb|ADZ90282.1| PhoH family protein [Marinomonas mediterranea MMB-1]
          Length = 466

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A  L+       S ++I+ GP+GSGK+ LA  +     + + +   K  + I++    
Sbjct: 264 AMAFYLLRHD---NSDLMIMTGPAGSGKTLLALAY-----ALQVTMEEKRFNKIIVARST 315

Query: 110 PVLLEDIDLLDFNDTQ 125
           P + EDI  L   + +
Sbjct: 316 PPMAEDIGFLPGTEEE 331


>gi|326473474|gb|EGD97483.1| cell division control protein Cdc48 [Trichophyton tonsurans CBS
           112818]
 gi|326480303|gb|EGE04313.1| cell division cycle protein 48 [Trichophyton equinum CBS 127.97]
          Length = 814

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 252 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSID-- 369

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 370 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 409


>gi|297849140|ref|XP_002892451.1| hypothetical protein ARALYDRAFT_311880 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338293|gb|EFH68710.1| hypothetical protein ARALYDRAFT_311880 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 398

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P  P R  +L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 133 PRRPWRAFLLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 173


>gi|283768399|ref|ZP_06341311.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
 gi|283104791|gb|EFC06163.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219]
          Length = 625

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + +S     S        + +                     
Sbjct: 208 ILLVGPPGTGKTMLAKAVAGESNVPFISISGSEFIEMFVGMGASKVRDLFKKAKEKAPCI 267

Query: 111 VLLEDIDLLDF----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +            ++      QL   ++   + +  +++ A   P +     
Sbjct: 268 VFIDEIDAVGGKRTAGHMGGNDEREQTLNQLLTEMDGFEENNGIVILAATNRPENLDPAL 327

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 328 LRPGRFDRRVPVELPDLQGR 347


>gi|301121234|ref|XP_002908344.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
 gi|262103375|gb|EEY61427.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
          Length = 800

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 43/169 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------------LDSILID 106
           P R V+L GP G+GKS LA+  + +  +T     A                   D  +  
Sbjct: 184 PPRGVLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVSGMSGESEQKLRELFDEAISR 243

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTARTF---------PVSW--G 152
               + +++ID +            S    +  +   L+T+            PV     
Sbjct: 244 APSIIFIDEIDAITPKRET------SARGMEKRIVAQLLTSTDSLSLENTGGKPVILIGA 297

Query: 153 VCLPD-LCSRLKAATVVK----ISLPDDDFLEKVIVKMFADRQIFIDKK 196
              PD L S L+ A        + +PD++  EK++  +   R++ ++ +
Sbjct: 298 TNRPDALDSALRRAGRFDREICLGIPDEEAREKILRVLA--RKMTLEGE 344



 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   + +S +   S
Sbjct: 516 VLLYGPPGCGKTLLAKAIAHESGANFIS 543


>gi|254585551|ref|XP_002498343.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
 gi|238941237|emb|CAR29410.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
          Length = 826

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+ V+ L GP G GK+ LA   +++SR+   S
Sbjct: 550 PAGVL-LWGPPGCGKTLLAKAVANESRANFIS 580


>gi|255717218|ref|XP_002554890.1| KLTH0F16214p [Lachancea thermotolerans]
 gi|238936273|emb|CAR24453.1| KLTH0F16214p [Lachancea thermotolerans]
          Length = 434

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            GP G+GK+ LA   + ++ +T     A  L  + I     ++ +
Sbjct: 221 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGSKLVRD 265


>gi|254573410|ref|XP_002493814.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
 gi|238033613|emb|CAY71635.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
          Length = 416

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A ++    I     ++ E
Sbjct: 193 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 244


>gi|207728333|ref|YP_002256727.1| transposase protein [Ralstonia solanacearum MolK2]
 gi|206591579|emb|CAQ57191.1| probable transposase protein [Ralstonia solanacearum MolK2]
          Length = 291

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 30/127 (23%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--- 110
             I+   +     V+L+GPSG GK+ +A+  + ++          +   +++        
Sbjct: 125 AFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATARQQ 179

Query: 111 ----------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVS 150
                           +++++I  L F   +  LF   N +       ++++T+      
Sbjct: 180 NRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLPFTQ 237

Query: 151 WGVCLPD 157
           W     D
Sbjct: 238 WATAFAD 244


>gi|195426391|ref|XP_002061318.1| GK20855 [Drosophila willistoni]
 gi|194157403|gb|EDW72304.1| GK20855 [Drosophila willistoni]
          Length = 753

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D +L+    
Sbjct: 353 VLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEVLVGQGA 395


>gi|218441183|ref|YP_002379512.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218173911|gb|ACK72644.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 667

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 50/165 (30%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++  T FS  A     + + T                   
Sbjct: 239 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFIELFVGTGAARVRDLFKQAKEQAPCI 298

Query: 111 VLLEDIDLLDFN--------------DTQLFHIINSIH----QYDSSLLMTARTFPVSWG 152
           + ++++D +  +              +  L  ++  +        + +++ A   P +  
Sbjct: 299 IFIDELDAIGKSRASGGAMSGGSDEREQTLNQLLTEMDGFSVGEATVIVLAATNRPETLD 358

Query: 153 VCL--------------PDLCSRLKAATVV--KISLPDDDFLEKV 181
             L              PDL  R+    V   KI L DD  L+ +
Sbjct: 359 SALLRPGRFDRQVLVDRPDLAGRMAILEVYARKIPLADDVDLKAL 403


>gi|57118029|gb|AAW34154.1| transposon related protein [Campylobacter jejuni]
          Length = 252

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 33/154 (21%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA---NIWSD 86
           F F     I++   L   +    +R +D+     +  +IL+G SG GK+ LA    I + 
Sbjct: 75  FDFEFQPKINKQQFLDFES----LRFLDN-----NSNIILIGNSGVGKTHLATSIGIAAA 125

Query: 87  KSRSTRF-------------SNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFH 128
           K R + +             + I   LD  +      K +++++I  L   + +    F 
Sbjct: 126 KKRVSTYFIKCQDLIEQLKKAYIENKLDDRIKHFSKYKLLIIDEIGYLPIGEQEAKMFFQ 185

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS 160
           +I+  ++  S++ +T+      W     D  L S
Sbjct: 186 LIDRRYEKKSTI-VTSNINLSDWNQIFLDNMLAS 218


>gi|50309793|ref|XP_454909.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644044|emb|CAG99996.1| KLLA0E21209p [Kluyveromyces lactis]
          Length = 432

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            GP G+GK+ LA   + ++ +T     A  L  + I     ++ +
Sbjct: 219 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRD 263


>gi|84999794|ref|XP_954618.1| polynucleotide kinase 3'-phosphatase-like protein [Theileria
           annulata]
 gi|65305616|emb|CAI73941.1| polynucleotide kinase 3'-phosphatase-like protein, putative
           [Theileria annulata]
          Length = 448

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 63  PSRVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           PS +++L+G   SGK+  + I+       +S      +  +SL   LI  R+ V+++DI+
Sbjct: 286 PSGLILLIGNLSSGKTHFSRIFRNFTPMSQSDFGSTFHFMESLRKKLI-KRENVVIDDIN 344

Query: 118 LLDFNDTQLFHI 129
                  Q  H+
Sbjct: 345 NTANERVQFVHL 356


>gi|9632638|ref|NP_049665.1| gp44 clamp loader subunit, DNA polymerase accessory protein
           [Enterobacteria phage T4]
 gi|228860985|ref|YP_002854008.1| gp44 clamp-loader subunit [Enterobacteria phage RB51]
 gi|228861365|ref|YP_002854386.1| gp44 clamp-loader subunit [Enterobacteria phage RB14]
 gi|330858577|ref|YP_004414952.1| putative clamp-loader subunit [Shigella phage Shfl2]
 gi|118810|sp|P04526|DPA44_BPT4 RecName: Full=DNA polymerase accessory protein 44; AltName:
           Full=Clamp loader large subunit; AltName: Full=Protein
           Gp44
 gi|5354262|gb|AAD42469.1|AF158101_56 gp44 clamp loader subunit, DNA polymerase accessory protein
           [Enterobacteria phage T4]
 gi|215905|gb|AAC05394.1| DNA polymerase accessory protein g44 [Enterobacteria phage T4]
 gi|227438381|gb|ACP30694.1| gp44 clamp-loader subunit [Enterobacteria phage RB14]
 gi|227438659|gb|ACP30971.1| gp44 clamp-loader subunit [Enterobacteria phage RB51]
 gi|291290266|dbj|BAI83061.1| clamp loader subunit, DNA polymerase accessory protein
           [Enterobacteria phage AR1]
 gi|299780406|gb|ADJ39768.1| clamp loader small subunit [Enterobacteria phage T4T]
 gi|327397511|gb|AEA73013.1| putative clamp-loader subunit [Shigella phage Shfl2]
          Length = 319

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 71/184 (38%), Gaps = 36/184 (19%)

Query: 65  RVVILVGPS-GSGKSCLANIWSDKSRS--------------TRFSNIAKSLDSILIDTRK 109
             +IL  PS G+GK+ +A        +               R      +  +     +K
Sbjct: 43  PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQK 102

Query: 110 PVLLEDIDLLDFNDTQLFHI--INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
            +++++ D     ++Q  H+      +  + S+++TA     +    +  L SR     V
Sbjct: 103 VIVIDEFDRSGLAESQR-HLRSFMEAYSSNCSIIITA----NNIDGIIKPLQSR---CRV 154

Query: 168 VKISLPDD----DFLEKVIVKM---FADRQIFIDK-KLAAYIVQRMERSLVFAEKLVDKM 219
           +    P D    + ++++I ++        I I   K+ A +V++   +     K + ++
Sbjct: 155 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKK---NFPDFRKTIGEL 211

Query: 220 DNLA 223
           D+ +
Sbjct: 212 DSYS 215


>gi|307103771|gb|EFN52029.1| hypothetical protein CHLNCDRAFT_139627 [Chlorella variabilis]
          Length = 945

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 59/208 (28%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------------- 110
            V+L GP+G+GK+ L+   + ++ +T F     +        +                 
Sbjct: 676 TVLLYGPAGAGKTMLSMAAAHQAGATLFDLSPGTTAGKFPGKQAAIMVHMVFKAAHALAP 735

Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT--ARTFPVSWGVCLPDLCSRLKAAT 166
             VL+ED+D +   D               + L+T      P           SR++ A 
Sbjct: 736 SVVLVEDVDHVFLTDRA------------RAALVTPPGGEPP-----------SRIRKAL 772

Query: 167 VVKIS--LPDDDFLEKVIVKMFADR-------QIFIDK-----KLAAYIVQRMERSLVFA 212
           V +++   P D  L  V     A R       Q+ +        L     QR E  L  +
Sbjct: 773 VAEVADLEPGDGVLACVKRDERALRTFIQRYIQLPLPDYGGRHALLQSFAQRDELVLGES 832

Query: 213 EKLVDKMDNLALSRGM--GITRSLAAEV 238
             L+ ++    LS G    + R LAA +
Sbjct: 833 TALLAQL-TAGLSSGQLLEVVRQLAARL 859


>gi|296163468|ref|ZP_06846217.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1]
 gi|295886283|gb|EFG66152.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1]
          Length = 185

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIW--------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLED 115
           ++LVG  GSGK+ LA             + R     ++A +L+      R       L  
Sbjct: 18  LVLVGGPGSGKTHLATAIGVSGVMHHGKRVRFYSTVDLANALEQEKAQGRAGRIAASLLR 77

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +DL+  ++             LFH+++ ++++ +S+ +T       W 
Sbjct: 78  LDLVILDELGYLPFSQAGGALLFHLLSRLYEH-TSVAVTTNLDFAEWS 124


>gi|296816168|ref|XP_002848421.1| cell division cycle protein 48 [Arthroderma otae CBS 113480]
 gi|238841446|gb|EEQ31108.1| cell division cycle protein 48 [Arthroderma otae CBS 113480]
          Length = 814

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 252 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSID-- 369

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 370 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 409


>gi|237838979|ref|XP_002368787.1| 26S proteasome subunit 4, putative [Toxoplasma gondii ME49]
 gi|211966451|gb|EEB01647.1| 26S proteasome subunit 4, putative [Toxoplasma gondii ME49]
          Length = 441

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 219 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 270


>gi|154292106|ref|XP_001546630.1| 26S protease regulatory subunit 6A [Botryotinia fuckeliana B05.10]
 gi|150846289|gb|EDN21482.1| 26S protease regulatory subunit 6A [Botryotinia fuckeliana B05.10]
          Length = 461

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 248 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 307

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 365

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 366 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMTVDDAV 401


>gi|145347721|ref|XP_001418310.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578539|gb|ABO96603.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 425

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +         L  + I     ++ +
Sbjct: 205 PPKGVLLYGPPGTGKTLIARACAAQTNAAYLKLAGPLLVQMFIGDGAKLVRD 256


>gi|89893681|ref|YP_517168.1| hypothetical protein DSY0935 [Desulfitobacterium hafniense Y51]
 gi|89333129|dbj|BAE82724.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1141

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 58  SWPSWP-SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRK 109
           +   W  ++++++ G  G GK+ +A + +       + +     ++I      +    ++
Sbjct: 189 ALREWSQNQIIVISGEPGVGKTTMAYLLALAYLQPDNLAGFIWANSIHDVYAMMDDQQKQ 248

Query: 110 PVLLEDI--------DLLDFNDTQLFHIINSIHQY--DSSLLMTARTFPVSWGV-CLPDL 158
            ++L+D              ++ +L  +I  I +      L++T R + +  G+   P L
Sbjct: 249 VIILDDFWGSIFHDDHTRRNDENRLDKLIRRIIESKGQKRLILTTREYILQQGLQKHPAL 308

Query: 159 CSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
              L + A +  +    +D    ++ +     Q+        Y+
Sbjct: 309 RETLAQYALICTMEEYGEDEKASILFRHLYASQLDYH--YVDYL 350


>gi|323701681|ref|ZP_08113353.1| phosphoribulokinase/uridine kinase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533454|gb|EGB23321.1| phosphoribulokinase/uridine kinase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 555

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLE---DIDLLD 120
           R+V++ GPS SGK+  A   S + +      +A SLD   +D    P   +   D + +D
Sbjct: 289 RIVLIAGPSSSGKTTFAQRLSIQLQVNGICPVAISLDDYFVDREHTPRDADGNYDFESID 348

Query: 121 FNDTQLF--HIINSIHQYDSSL 140
             D  LF  H+I  I   +  L
Sbjct: 349 AIDRALFNEHLIKLIQGEEVEL 370


>gi|254573080|ref|XP_002493649.1| Putative ATPase of the AAA family [Pichia pastoris GS115]
 gi|238033448|emb|CAY71470.1| Putative ATPase of the AAA family [Pichia pastoris GS115]
 gi|328354523|emb|CCA40920.1| Protein SAP1 [Pichia pastoris CBS 7435]
          Length = 719

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++          
Sbjct: 469 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKFLGESEKLV---------- 518

Query: 123 DTQLFHI 129
              LF +
Sbjct: 519 -RALFQL 524


>gi|221481315|gb|EEE19709.1| 26S proteasome subunit, putative [Toxoplasma gondii GT1]
 gi|221502038|gb|EEE27784.1| 26S proteasome subunit, putative [Toxoplasma gondii VEG]
          Length = 441

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 219 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 270


>gi|223994709|ref|XP_002287038.1| 26S proteasome regulatory particle chain rpt6-like protein
           [Thalassiosira pseudonana CCMP1335]
 gi|220978353|gb|EED96679.1| 26S proteasome regulatory particle chain rpt6-like protein
           [Thalassiosira pseudonana CCMP1335]
          Length = 271

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 47/148 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P + ++L GP G+GK+ LA   + +S +T  +                 I+ + +     
Sbjct: 48  PPKGILLYGPPGTGKTMLAKAIAKESHATFVNVQLSSIMNKWFGESNKLISATFNLARKL 107

Query: 107 TRKPVLLEDIDLL----DFND--------TQLFHIINSIHQYDSSLLMTA---------- 144
               V ++++D      D  +        ++   + + +      +L +           
Sbjct: 108 APSVVFIDEMDAFLSQRDGTEGSAVNSMKSEFLTLWDGLLSERKIVLPSPPIIVLGATNR 167

Query: 145 ---------RTFPVSWGVCLPDLCSRLK 163
                    R  P S+ + LPD  SRL+
Sbjct: 168 PYDVDPAILRRLPRSFEISLPDYSSRLQ 195


>gi|212691901|ref|ZP_03300029.1| hypothetical protein BACDOR_01396 [Bacteroides dorei DSM 17855]
 gi|212665573|gb|EEB26145.1| hypothetical protein BACDOR_01396 [Bacteroides dorei DSM 17855]
          Length = 236

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GPSG+GK+ LA      +  T +     +++ I+                  I   
Sbjct: 103 LILIGPSGTGKTFLAAGLVFDAVKTGYKAYLMTMEDIVNCLRLKDISTPAMMTYNKILRA 162

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + + + DI L        T  F++IN++H+  +S+++T    P      L D
Sbjct: 163 QLLAINDIMLFPVKRKEATAFFNLINTLHE-KTSIIITTNKAPTECVETLND 213


>gi|169858212|ref|XP_001835752.1| hypothetical protein CC1G_07176 [Coprinopsis cinerea okayama7#130]
 gi|116503202|gb|EAU86097.1| hypothetical protein CC1G_07176 [Coprinopsis cinerea okayama7#130]
          Length = 463

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 56/167 (33%), Gaps = 38/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  ++ GP G+GK+ LA   +  + +      A SL  + I     ++          
Sbjct: 243 PPKGCLMYGPPGTGKTLLARACAASTNACYLKLAAPSLVQMFIGDGAKLVRDAFALAKEK 302

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +                  +  ++N +      +   ++ A       
Sbjct: 303 APAIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDERIKVIAATNRIDIL 362

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              L  L S RL     ++  LP++    +++      R++     +
Sbjct: 363 DPAL--LRSGRLD--RKIEFPLPNETARARILE--IHSRKMSCSPDV 403


>gi|67521818|ref|XP_658970.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
 gi|40746393|gb|EAA65549.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
          Length = 628

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 43/191 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R V+L GP G GK+ +AN ++ +      S  A S+                +     
Sbjct: 97  PPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEAKRL 156

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165
               + +++ID +           NS  + +  ++            C+ DL   L+   
Sbjct: 157 APCLIFIDEIDAITPKRE------NSQREMEKRIV-------AQLLTCMDDLA--LEKTD 201

Query: 166 --TVVKISL---PD--DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
              V+ ++    PD  D  L +              + +   I++ + R +    +LVD 
Sbjct: 202 GKPVIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKM----RLVDD 257

Query: 219 MDNLALSRGMG 229
           +D   L++   
Sbjct: 258 LDFKTLAKRTP 268



 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 405 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 450


>gi|327300188|ref|XP_003234787.1| cell division control protein Cdc48 [Trichophyton rubrum CBS
           118892]
 gi|326463681|gb|EGD89134.1| cell division control protein Cdc48 [Trichophyton rubrum CBS
           118892]
          Length = 814

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 252 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSID-- 369

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 370 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 409


>gi|325089916|gb|EGC43226.1| DNA replication ATPase [Ajellomyces capsulatus H88]
          Length = 547

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 93/265 (35%), Gaps = 46/265 (17%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDL----LVHSAIEQAVRLID 57
           N  +ED S  V   + ++  +N       +       S DD+    LV  +      LI+
Sbjct: 106 NFSEEDSSRLVKRSRTSNALENAA---PLAERMRPR-SLDDVYGQELVGPS-GVLRGLIE 160

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------------IAKSLDSIL 104
                    +IL G +G+GK+ +A + +    S                   +++ + + 
Sbjct: 161 QDR---VPSMILWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVAECKKLFSEAKNELS 217

Query: 105 IDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +  RK ++  ++I     +   +F       +     L+ A T   S+ V    L SR  
Sbjct: 218 LSGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENPSFKVQNA-LLSR-- 271

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVD 217
                 ++   D+ +  ++ +              +D +L  Y+    +     +  L++
Sbjct: 272 -CRTFTLAKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLE 330

Query: 218 -KMD---NLALSR---GMGITRSLA 235
             MD      ++R      +TR+L 
Sbjct: 331 LAMDLSRREGMTREDLKKSLTRTLV 355


>gi|302671634|ref|YP_003831594.1| recombination factor protein RarA [Butyrivibrio proteoclasticus
           B316]
 gi|302396107|gb|ADL35012.1| recombination factor protein RarA [Butyrivibrio proteoclasticus
           B316]
          Length = 440

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 76/200 (38%), Gaps = 33/200 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + +  +++      A       ++       +++ +     T L
Sbjct: 55  IILYGPPGTGKTTLAKVIAGTTKAEFMQINATIAGKKDMEDVVNKAKDNLGMYGKK-TIL 113

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + + ++    
Sbjct: 114 FIDEIHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGA-LISR---SIIFELKPLT 169

Query: 175 DDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            D ++ ++ +   D  R +      ++   A ++    +     A   ++ ++   L+  
Sbjct: 170 ADDIKVLLNRAVTDNERGMGAYKAVLETDAADFLADLAD---GDARHALNAIELGILTTP 226

Query: 228 MG------ITRSLAAEVLKE 241
                   IT+ +A E +++
Sbjct: 227 RSEDGLIHITKEVAEECIQK 246


>gi|302662987|ref|XP_003023142.1| hypothetical protein TRV_02721 [Trichophyton verrucosum HKI 0517]
 gi|291187123|gb|EFE42524.1| hypothetical protein TRV_02721 [Trichophyton verrucosum HKI 0517]
          Length = 903

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 341 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 400

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 401 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSID-- 458

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 459 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 498


>gi|305680500|ref|ZP_07403308.1| putative cell division protease FtsH [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660031|gb|EFM49530.1| putative cell division protease FtsH [Corynebacterium matruchotii
           ATCC 14266]
          Length = 974

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 49/206 (23%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQARENSP 260

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     +  +LM A   P     
Sbjct: 261 CIIFVDEIDAVGRQRGSGMGGGHDEREQTLNQLLVEMDGFGDREGVILMAATNRPDILDQ 320

Query: 154 CL--------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197
            L              PDL  R     V     P   D  L  +  +        +   L
Sbjct: 321 ALLRPGRFDRQIPVTNPDLKGREAILKVHAEGKPFAKDVDLAALARRTAGMSGADLANVL 380

Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221
             AA +  R+  +++ A+ L +  D 
Sbjct: 381 NEAALLTARIGGNVITADALEEATDR 406


>gi|303273508|ref|XP_003056115.1| AAA ATPase [Micromonas pusilla CCMP1545]
 gi|226462199|gb|EEH59491.1| AAA ATPase [Micromonas pusilla CCMP1545]
          Length = 805

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R ++L GPSG  K+ LA   +  S +T  +  A  +    +   + V+ +  D  
Sbjct: 559 PHRGILLHGPSGCAKTTLARAIATTSGATVVALTAADIFDKYVGIGEKVIRDAFDRA 615


>gi|156086888|ref|XP_001610851.1| 26S protease regulatory subunit 4 [Babesia bovis T2Bo]
 gi|154798104|gb|EDO07283.1| 26S protease regulatory subunit 4, putative [Babesia bovis]
          Length = 438

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANETCATFLRVVGSELIQKYLGEGPKLVRE 267


>gi|24640100|ref|NP_572308.2| Rpt4 [Drosophila melanogaster]
 gi|22831810|gb|AAF46146.2| Rpt4 [Drosophila melanogaster]
          Length = 390

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 167 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 218

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 219 ------MFNYARDHQ 227


>gi|330038957|ref|XP_003239746.1| cell division control protein 48 [Cryptomonas paramecium]
 gi|327206671|gb|AEA38848.1| cell division control protein 48 [Cryptomonas paramecium]
          Length = 753

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GPSGSGK+ +A   +++S +  +                SN+ K       +
Sbjct: 221 PPRGILMYGPSGSGKTLIAKAIANESGANLYTLNGSEILAKTSNDSESNLKKIFQQAQCN 280

Query: 107 TRKPVLLEDIDLLD 120
           +   +L+++ID L 
Sbjct: 281 SPSIILIDEIDSLA 294



 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 494 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESESNVREVFDKA 550


>gi|294102120|ref|YP_003553978.1| IstB domain protein ATP-binding protein [Aminobacterium colombiense
           DSM 12261]
 gi|293617100|gb|ADE57254.1| IstB domain protein ATP-binding protein [Aminobacterium colombiense
           DSM 12261]
          Length = 310

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 27/127 (21%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           D ++ +A   A+  ++         +IL G +G GK+ LA     +  +   S +   + 
Sbjct: 136 DPVIRTAKGLAMACVED-----GSSLILGGGTGVGKTHLAIAMIQELTAKGKSAVFVPVV 190

Query: 102 SILIDTRKPV----------LLEDIDLLDFN------------DTQLFHIINSIHQYDSS 139
            IL + R              ++D D +  +            D +LF +I++ ++    
Sbjct: 191 EILDEIRAGFDEGTAYKIQQAVKDADCVAIDDLGAQRKDKSWVDERLFSLIDARYRSGKQ 250

Query: 140 LLMTART 146
            ++T   
Sbjct: 251 TIITTNA 257


>gi|288957694|ref|YP_003448035.1| AAA ATPase, central domain protein [Azospirillum sp. B510]
 gi|288958866|ref|YP_003449207.1| AAA ATPase, central domain protein [Azospirillum sp. B510]
 gi|288910002|dbj|BAI71491.1| AAA ATPase, central domain protein [Azospirillum sp. B510]
 gi|288911174|dbj|BAI72663.1| AAA ATPase, central domain protein [Azospirillum sp. B510]
          Length = 304

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 43/164 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILID 106
           P R  +L GP G GK+ LA+  + +                       NI    D+++  
Sbjct: 57  PRRSALLFGPPGCGKTTLAHHLAARLGLPLVVVNMASLTSCYLGETGKNINALFDAVIEQ 116

Query: 107 TRKPVL-LEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTF----PV 149
               VL L++ D +                  +  ++  I Q+  ++L          P 
Sbjct: 117 ADSCVLFLDEFDSVCSKRRAAESSAGQERNAIVIALLQKIDQFPGTMLAATNRADDVDPA 176

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193
            W           +    + I  PDD+  + ++V+      +  
Sbjct: 177 IWR----------RFGLHLDIVEPDDECRQAILVRYLQPYSLSP 210


>gi|283138944|gb|ADB12547.1| ATPase [uncultured bacterium 9F08]
          Length = 449

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 28/176 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           +I  GP G+GK+ LA + +    +                + + ++  +        + +
Sbjct: 56  MIFWGPPGTGKTTLARMIAGHGEAQFITISAVLSGVKEIRAAVEQARQARQRGQATVLFV 115

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  +   + A T   S+ +    L SR   A V  + 
Sbjct: 116 DEVHRFNKSQQDAFLPHI-----EDGTFTFIGATTENPSFELNNA-LLSR---ARVYVLK 166

Query: 172 LPDDDFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLA 223
             D   +E ++ +   D  R +      LA  + +R+  +    A + ++ ++  A
Sbjct: 167 SLDSAEIETILQQALTDPERGLGRRPLVLADTLRRRIAEAADGDARRALNLLEIAA 222


>gi|258653471|ref|YP_003202627.1| ATPase AAA central domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258556696|gb|ACV79638.1| AAA ATPase central domain protein [Nakamurella multipartita DSM
           44233]
          Length = 494

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 28/151 (18%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLE 114
                  ++L GP G+GK+ LA + +  +       +  S   K + +++ +    +   
Sbjct: 73  QGGAPSSMLLYGPPGTGKTTLATLVAGSTGRFFAQLSAVSAGVKEVRAVIAEATTRL--- 129

Query: 115 DIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                    T LF    H  +           +  + +L+ A T    + V  P L SR 
Sbjct: 130 ---RRTGEQTVLFIDEVHRFSRTQQDSLLGAVEDRTIVLVAATTENPFFSVVSP-LLSR- 184

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD-RQIF 192
             + ++++    D  + ++I +  AD R + 
Sbjct: 185 --SLILQLQPLTDTDISELIDRAVADERGLA 213


>gi|258568646|ref|XP_002585067.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704]
 gi|237906513|gb|EEP80914.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704]
          Length = 741

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      S  A S+ S +    +  L E  D  
Sbjct: 207 PPRGVLLHGPPGCGKTLIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFDEA 263



 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 516 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 561


>gi|126659472|ref|ZP_01730605.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126619206|gb|EAZ89942.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 667

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 72/220 (32%), Gaps = 58/220 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++  T FS  A     + + T                   
Sbjct: 244 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCI 303

Query: 111 VLLEDIDLLDFN--------------DTQLFHIIN----SIHQYDSSLLMTARTFPVSWG 152
           + ++++D +  +              +  L  ++           + +++ A   P +  
Sbjct: 304 IFIDELDAIGKSRSGGNGLSGSNDEREQTLNQLLTEMDGFAVGDATVIVLAATNRPETLD 363

Query: 153 VCL--------------PDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFID 194
             L              PDL  RL      A  V+I    D  L+ +           + 
Sbjct: 364 SALLRPGRFDRQVLVDRPDLSGRLAILEIYAQRVEIDP--DVNLKDIATHTPGFAGADLA 421

Query: 195 KKL--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230
             +  AA +  R +R  V  E   + ++     L +   +
Sbjct: 422 NLVNEAALLAARNQREYVTQEDFKEAIERVVAGLEKKSRV 461


>gi|74003828|ref|XP_848524.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit,
           ATPase 1 isoform 2 [Canis familiaris]
          Length = 440

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSQLIQKYLGNGPKLIRE 269


>gi|74003826|ref|XP_856279.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit,
           ATPase 1 isoform 3 [Canis familiaris]
          Length = 414

 Score = 41.3 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 192 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSQLIQKYLGNGPKLIRE 243


>gi|312211057|emb|CBX91143.1| similar to 26S protease regulatory subunit 6A [Leptosphaeria
           maculans]
          Length = 460

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 306

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 307 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 364

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D+ +
Sbjct: 365 RSGRLD--RKIEFPLPNEEARAQIM--RIHSRKMTVDEGV 400


>gi|311993039|ref|YP_004009905.1| gp44 clamp loader subunit, DNA polymerase accessory protein
           [Enterobacteria phage CC31]
 gi|284177877|gb|ADB81543.1| gp44 clamp loader subunit, DNA polymerase accessory protein
           [Enterobacteria phage CC31]
          Length = 319

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 38/185 (20%)

Query: 65  RVVILVGPS-GSGKSCLANIWSDKSR--------------STRFSNIAKSLDSILIDTRK 109
             +ILV  S G+GK+ LA    +                   R      +  + L   +K
Sbjct: 43  PHMILVSASPGTGKTTLAKALCNDVGVEMMFVNGSDCKIDFVRGPLTNFATAASLSGKQK 102

Query: 110 PVLLEDIDLLDFNDTQLFHI--INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
            +++++ D     ++Q  H+      +  + ++++TA       G+  P L SR     V
Sbjct: 103 VIVIDEFDRSGLAESQR-HLRSFMEAYSSNCTIIITAN---NIDGIIEP-LQSR---CRV 154

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFI---------DKKLAAYIVQRMERSLVFAEKLVDK 218
           +K     DD    + +K    R + I         D K+ A +V +   +     K +  
Sbjct: 155 IKFGQATDDDKRNM-MKEMIRRCVEICKNENIKVEDLKVIAALVNK---NFPDFRKTIGD 210

Query: 219 MDNLA 223
           +D+ +
Sbjct: 211 LDHYS 215


>gi|330918132|ref|XP_003298101.1| hypothetical protein PTT_08703 [Pyrenophora teres f. teres 0-1]
 gi|311328886|gb|EFQ93795.1| hypothetical protein PTT_08703 [Pyrenophora teres f. teres 0-1]
          Length = 460

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 306

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 307 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 364

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 365 RSGRLD--RKIEFPLPNEEARAQIM--RIHSRKMTVDDAV 400


>gi|302686514|ref|XP_003032937.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8]
 gi|300106631|gb|EFI98034.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8]
          Length = 814

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 301 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSID-- 358

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 359 -PALR-RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLADDV 398


>gi|296087957|emb|CBI35240.3| unnamed protein product [Vitis vinifera]
          Length = 380

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 46/141 (32%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P R  +L GP G+GKS LA   + ++ ST FS  +  L S                    
Sbjct: 109 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARES 168

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    H     L++ A   P S  
Sbjct: 169 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYSLD 228

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 229 QAIRRRFDKRIYIPLPDLKAR 249


>gi|221501683|gb|EEE27447.1| 26S protease regulatory subunit S10b, putative [Toxoplasma gondii
           VEG]
          Length = 654

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 66/180 (36%), Gaps = 44/180 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112
           V++ GP G+GK+ LA   + ++++T        L  + I     ++              
Sbjct: 437 VLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFELAKEKAPAI 496

Query: 113 --LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSWGVCL 155
             ++++D +                  +  ++N +      D   ++ A   P      L
Sbjct: 497 IFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRPDVLDPAL 556

Query: 156 PDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L S RL     +++  P+++  E+++      R++ ++K+   +      R L  A  
Sbjct: 557 --LRSGRLD--RKIELPHPNEEARERILQIHA--RKMNVNKEDVNF------RELARATD 604


>gi|189205058|ref|XP_001938864.1| 26S protease regulatory subunit 6A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187985963|gb|EDU51451.1| 26S protease regulatory subunit 6A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 460

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 306

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 307 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 364

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 365 RSGRLD--RKIEFPLPNEEARAQIM--RIHSRKMTVDDAV 400


>gi|50284915|ref|XP_444885.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524187|emb|CAG57778.1| unnamed protein product [Candida glabrata]
          Length = 429

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            GP G+GK+ LA   + ++ +T     A  L  + I     ++ +
Sbjct: 216 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGAKLVRD 260


>gi|71005554|ref|XP_757443.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
 gi|46096926|gb|EAK82159.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
          Length = 878

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 29/128 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTR 108
            S  V+L GP G GK+ LA   +++SR+                 S  A         T 
Sbjct: 593 ASSGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFARARTS 652

Query: 109 KPVLL--EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            P ++  +++D               + + D SL  ++     +    L  L SR++   
Sbjct: 653 SPCVIFFDELDA-------------LVPRRDDSLSESSSRVVNTLLTELDGLESRVQTYV 699

Query: 167 VVKISLPD 174
           +   + PD
Sbjct: 700 IAATNRPD 707


>gi|332666626|ref|YP_004449414.1| ABC transporter-like protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332335440|gb|AEE52541.1| ABC transporter related protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 205

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILI-DTRKPVLLED 115
           P   + + GP+GSGKS L  +            +   ++    LD +          +E 
Sbjct: 27  PGSRMAITGPNGSGKSTLLKMICGHLTPSKGQVAYSIADKKLELDQVYAHLAYAAPYIEL 86

Query: 116 IDLLDFNDTQLFH 128
           I+     +   FH
Sbjct: 87  IEEFSLQEAIDFH 99


>gi|159466846|ref|XP_001691609.1| cdc48-like protein [Chlamydomonas reinhardtii]
 gi|158278955|gb|EDP04717.1| cdc48-like protein [Chlamydomonas reinhardtii]
          Length = 685

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 51  QAVRLIDSWP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98
           QA+R + +WP             WP R ++L GP G GK+ L    + ++ +      A 
Sbjct: 84  QALRELVAWPVLYAAQGAALGVRWP-RGLLLHGPPGCGKTLLVQAVAAEAGAVLHVVTAA 142

Query: 99  SLDSIL 104
            +    
Sbjct: 143 RVTGAY 148


>gi|115374473|ref|ZP_01461755.1| ClpX C4-type zinc finger, putative [Stigmatella aurantiaca DW4/3-1]
 gi|310821916|ref|YP_003954274.1| hypothetical protein STAUR_4667 [Stigmatella aurantiaca DW4/3-1]
 gi|115368565|gb|EAU67518.1| ClpX C4-type zinc finger, putative [Stigmatella aurantiaca DW4/3-1]
 gi|309394988|gb|ADO72447.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 511

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 71/215 (33%), Gaps = 33/215 (15%)

Query: 33  PRCLGISRDDL-LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
           P       +   LV  A  QA  L++      +R ++++GP G GKS    + + ++  T
Sbjct: 277 PPRAAAGPEVFELVGQAEPQA--LLEKGILAGARRMLILGPEGVGKSLWFQVLAKRAMGT 334

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR-----T 146
             S  A    S         L+ED+D L       F         D  +LM+AR      
Sbjct: 335 VMSLEALEQGS----GNGVALVEDVDRLPVEAQLRFGDF-LRRHPDRVVLMSARGSLGAD 389

Query: 147 FPVSWGVCLPDLCSRLKAA------------------TVVKISLPDDDFLEKVIVKMFAD 188
            P+        L  R   A                    V + +P +    ++  +  A 
Sbjct: 390 PPLMLRGGTGSLLVRTTEALFKAVQGTLPLPLLEHVQLCVALQVPTEAEYVEIARRRLAP 449

Query: 189 R--QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           R  +  +  ++ A       RS     +L   ++ 
Sbjct: 450 RAPESTVSPEVIALFAAEAVRSPRAGHELNALLNR 484


>gi|157827821|ref|YP_001496885.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii OSU 85-389]
 gi|157803125|gb|ABV79848.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii OSU 85-389]
          Length = 637

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 47/198 (23%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111
           +L+GP G+GK+ LA   + ++    FS        + +                     +
Sbjct: 192 LLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCII 251

Query: 112 LLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGVC 154
            +++ID +            ++ +    +N +          +  +++ A   P      
Sbjct: 252 FIDEIDAVGRHRGIGMGGGNDERE--QTLNQMLVEMDGFEANEGVVIIAATNRPDVLDNA 309

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
           L      L+       + +S PD D  EK++      +++    K+   I+ R       
Sbjct: 310 L------LRPGRFDRQITVSNPDIDGREKILQVHL--KKVKYSTKIVPRIIARGTPGFSG 361

Query: 212 AEKLVDKMDNLALSRGMG 229
           A +L + ++  AL     
Sbjct: 362 A-ELANLVNEAALIAARR 378


>gi|329725069|gb|EGG61564.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 697

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++ +  FS        + +      + +  D    N
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256


>gi|321157181|emb|CBW39166.1| AAA+ ATPase [Streptococcus phage 11865]
          Length = 256

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           A R+   W       ++L G +G+GKS LA
Sbjct: 106 AKRICREWSEGARNNIVLQGEAGTGKSHLA 135


>gi|315054197|ref|XP_003176473.1| vacuolar protein sorting-associated protein 4 [Arthroderma gypseum
           CBS 118893]
 gi|311338319|gb|EFQ97521.1| vacuolar protein sorting-associated protein 4 [Arthroderma gypseum
           CBS 118893]
          Length = 434

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSISSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIVF 229


>gi|307126206|ref|YP_003878237.1| gp21 [Streptococcus pneumoniae 670-6B]
 gi|306483268|gb|ADM90137.1| gp21 [Streptococcus pneumoniae 670-6B]
          Length = 256

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           A R+   W       ++L G +G+GKS LA
Sbjct: 106 AKRICREWSEGARNNIVLQGEAGTGKSHLA 135


>gi|302750402|gb|ADL64579.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 667

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++ +  FS        + +      + +  D    N
Sbjct: 171 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 226


>gi|298693841|gb|ADI97063.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323438743|gb|EGA96483.1| cell division protein [Staphylococcus aureus O11]
 gi|323442045|gb|EGA99680.1| cell division protein [Staphylococcus aureus O46]
          Length = 697

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++ +  FS        + +      + +  D    N
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256


>gi|282915829|ref|ZP_06323597.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           D139]
 gi|282320320|gb|EFB50662.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           D139]
          Length = 697

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++ +  FS        + +      + +  D    N
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256


>gi|282918292|ref|ZP_06326032.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C427]
 gi|282317858|gb|EFB48227.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C427]
          Length = 697

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++ +  FS        + +      + +  D    N
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256


>gi|258424453|ref|ZP_05687332.1| cell-division protein [Staphylococcus aureus A9635]
 gi|257845322|gb|EEV69357.1| cell-division protein [Staphylococcus aureus A9635]
          Length = 697

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++ +  FS        + +      + +  D    N
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256


>gi|242065978|ref|XP_002454278.1| hypothetical protein SORBIDRAFT_04g027890 [Sorghum bicolor]
 gi|241934109|gb|EES07254.1| hypothetical protein SORBIDRAFT_04g027890 [Sorghum bicolor]
          Length = 973

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 43/144 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P + V+L GP G+GK+ LA   + ++ +   S    +L S                    
Sbjct: 716 PCKGVLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRL 775

Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144
            PV++  +++D L       F H     + N            +    L++ A       
Sbjct: 776 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKESQRILILGATNRPFDL 835

Query: 145 -----RTFPVSWGVCLPDLCSRLK 163
                R  P    V LPD  +R+K
Sbjct: 836 DDAVIRRLPRRIYVDLPDAQNRMK 859


>gi|209879531|ref|XP_002141206.1| 26S proteasome subunit 4 [Cryptosporidium muris RN66]
 gi|209556812|gb|EEA06857.1| 26S proteasome subunit 4, putative [Cryptosporidium muris RN66]
          Length = 447

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 225 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 276


>gi|168490133|ref|ZP_02714332.1| gp21 [Streptococcus pneumoniae SP195]
 gi|183571502|gb|EDT92030.1| gp21 [Streptococcus pneumoniae SP195]
          Length = 256

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           A R+   W       ++L G +G+GKS LA
Sbjct: 106 AKRICREWSEGARNNIVLQGEAGTGKSHLA 135


>gi|138896158|ref|YP_001126611.1| Holliday junction DNA helicase RuvB [Geobacillus
           thermodenitrificans NG80-2]
 gi|166231496|sp|A4IRB2|RUVB_GEOTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|134267671|gb|ABO67866.1| Holliday junction DNA helicase RuvB [Geobacillus
           thermodenitrificans NG80-2]
          Length = 333

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 45/210 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +L+           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLAAIIANEMGVKMRATSGPALERPGDLAALLTSLEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDL--------------------- 158
            H +    +        D  L +T    P +  + L DL                     
Sbjct: 114 -HRLPRTVEEVLYPAMEDYCLDITVGKGPEARSLRL-DLPPFTLVGATTRAGALSAPLRD 171

Query: 159 ----CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
                SRL+   V        D L ++I +  A   I I+ + A  + +R   +   A +
Sbjct: 172 RFGVISRLEYYQV--------DQLAQIIERAAAILHIIINNEAALELARRARGTPRIANR 223

Query: 215 LVDKMDNLALSRG-MGITRSLAAEVLKETQ 243
           L+ ++ + A  RG   IT  LA E L+  Q
Sbjct: 224 LLRRVRDFAQVRGDGEITLPLAVEALERLQ 253


>gi|119184765|ref|XP_001243250.1| hypothetical protein CIMG_07146 [Coccidioides immitis RS]
          Length = 697

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  D  
Sbjct: 207 PPRGVLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 263



 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 516 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 561


>gi|57651387|ref|YP_185443.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161534|ref|YP_493198.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|151220685|ref|YP_001331507.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161508751|ref|YP_001574410.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142297|ref|ZP_03566790.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452808|ref|ZP_05700803.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948]
 gi|262049996|ref|ZP_06022855.1| cell-division protein [Staphylococcus aureus D30]
 gi|282925586|ref|ZP_06333239.1| cell division protease FtsH [Staphylococcus aureus A9765]
 gi|284023520|ref|ZP_06377918.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850371|ref|ZP_06791104.1| cell division protease FtsH [Staphylococcus aureus A9754]
 gi|304380529|ref|ZP_07363205.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|57285573|gb|AAW37667.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127508|gb|ABD22022.1| putative cell division protein FtsH [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|150373485|dbj|BAF66745.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160367560|gb|ABX28531.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859494|gb|EEV82347.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948]
 gi|259161931|gb|EEW46514.1| cell-division protein [Staphylococcus aureus D30]
 gi|269940082|emb|CBI48458.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282592490|gb|EFB97502.1| cell division protease FtsH [Staphylococcus aureus A9765]
 gi|294822795|gb|EFG39231.1| cell division protease FtsH [Staphylococcus aureus A9754]
 gi|304340933|gb|EFM06857.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315196194|gb|EFU26550.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139402|gb|EFW31280.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144179|gb|EFW35947.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313230|gb|AEB87643.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 697

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++ +  FS        + +      + +  D    N
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256


>gi|118581430|ref|YP_902680.1| ABC transporter-like protein [Pelobacter propionicus DSM 2379]
 gi|118504140|gb|ABL00623.1| ABC transporter related protein [Pelobacter propionicus DSM 2379]
          Length = 582

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P+ +V LVGPSGSGKS L ++   + D +  +   +     D  L      + L D    
Sbjct: 360 PNSMVALVGPSGSGKSTLVSLLPRFYDVAGGSITIDGYDIRDLTLDSLVNQIALVD---- 415

Query: 120 DFNDTQLFH 128
              +T LFH
Sbjct: 416 --QETTLFH 422


>gi|15923501|ref|NP_371035.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926188|ref|NP_373721.1| cell-division protein [Staphylococcus aureus subsp. aureus N315]
 gi|21282195|ref|NP_645283.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49482738|ref|YP_039962.1| cell division protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49485375|ref|YP_042596.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|88194271|ref|YP_499063.1| hypothetical protein SAOUHSC_00486 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266970|ref|YP_001245913.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393016|ref|YP_001315691.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156978839|ref|YP_001441098.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315220|ref|ZP_04838433.1| cell-division protein [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253730979|ref|ZP_04865144.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253735246|ref|ZP_04869411.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005304|ref|ZP_05143905.2| cell-division protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257424623|ref|ZP_05601051.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427289|ref|ZP_05603690.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429926|ref|ZP_05606312.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432628|ref|ZP_05608990.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257435532|ref|ZP_05611582.1| cell-division protein [Staphylococcus aureus subsp. aureus M876]
 gi|257794249|ref|ZP_05643228.1| cell division protein [Staphylococcus aureus A9781]
 gi|258407234|ref|ZP_05680379.1| cell division protein [Staphylococcus aureus A9763]
 gi|258420798|ref|ZP_05683734.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258429628|ref|ZP_05688302.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299]
 gi|258446102|ref|ZP_05694263.1| cell-division protein [Staphylococcus aureus A6300]
 gi|258448010|ref|ZP_05696140.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224]
 gi|258453844|ref|ZP_05701817.1| cell-division protein [Staphylococcus aureus A5937]
 gi|269202131|ref|YP_003281400.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895119|ref|ZP_06303339.1| cell division protease FtsH [Staphylococcus aureus A8117]
 gi|282903097|ref|ZP_06310989.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus C160]
 gi|282904886|ref|ZP_06312746.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907833|ref|ZP_06315671.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910149|ref|ZP_06317955.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913339|ref|ZP_06321130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M899]
 gi|282923043|ref|ZP_06330729.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C101]
 gi|283768946|ref|ZP_06341855.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           H19]
 gi|283957301|ref|ZP_06374759.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500388|ref|ZP_06666240.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509327|ref|ZP_06668043.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus
           M809]
 gi|293515915|ref|ZP_06670605.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407401|ref|ZP_06817198.1| cell division protease FtsH [Staphylococcus aureus A8819]
 gi|295427045|ref|ZP_06819682.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296276164|ref|ZP_06858671.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207386|ref|ZP_06923825.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246481|ref|ZP_06930321.1| cell division protease FtsH [Staphylococcus aureus A8796]
 gi|297591578|ref|ZP_06950215.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300910345|ref|ZP_07127798.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|13700401|dbj|BAB41699.1| cell-division protein [Staphylococcus aureus subsp. aureus N315]
 gi|14246279|dbj|BAB56673.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|21203631|dbj|BAB94331.1| cell-division protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49240867|emb|CAG39534.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243818|emb|CAG42243.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87201829|gb|ABD29639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740039|gb|ABQ48337.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945468|gb|ABR51404.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156720974|dbj|BAF77391.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725291|gb|EES94020.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726806|gb|EES95535.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257272650|gb|EEV04770.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275940|gb|EEV07408.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279442|gb|EEV10037.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282493|gb|EEV12626.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257285169|gb|EEV15286.1| cell-division protein [Staphylococcus aureus subsp. aureus M876]
 gi|257788221|gb|EEV26561.1| cell division protein [Staphylococcus aureus A9781]
 gi|257841192|gb|EEV65641.1| cell division protein [Staphylococcus aureus A9763]
 gi|257843190|gb|EEV67603.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257849687|gb|EEV73654.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299]
 gi|257855079|gb|EEV78021.1| cell-division protein [Staphylococcus aureus A6300]
 gi|257858700|gb|EEV81573.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224]
 gi|257864015|gb|EEV86770.1| cell-division protein [Staphylococcus aureus A5937]
 gi|262074421|gb|ACY10394.1| cell division protein FtsH, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282314562|gb|EFB44949.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           C101]
 gi|282322810|gb|EFB53130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325997|gb|EFB56303.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328309|gb|EFB58584.1| cell-division protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282332003|gb|EFB61512.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596523|gb|EFC01483.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus C160]
 gi|282762537|gb|EFC02677.1| cell division protease FtsH [Staphylococcus aureus A8117]
 gi|283461127|gb|EFC08213.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           H19]
 gi|283469803|emb|CAQ49014.1| putative Cell division protease FtsH homolog [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283791225|gb|EFC30035.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285816210|gb|ADC36697.1| Cell division protein FtsH [Staphylococcus aureus 04-02981]
 gi|290921323|gb|EFD98381.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096348|gb|EFE26608.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467872|gb|EFF10382.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus
           M809]
 gi|294967758|gb|EFG43790.1| cell division protease FtsH [Staphylococcus aureus A8819]
 gi|295129048|gb|EFG58677.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887949|gb|EFH26843.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176668|gb|EFH35930.1| cell division protease FtsH [Staphylococcus aureus A8796]
 gi|297575447|gb|EFH94164.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300888334|gb|EFK83521.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302332224|gb|ADL22417.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312436399|gb|ADQ75470.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312829006|emb|CBX33848.1| cell division protease ftsH homolog [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128639|gb|EFT84642.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|315193873|gb|EFU24267.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS00]
 gi|329729768|gb|EGG66165.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329731083|gb|EGG67455.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 697

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++ +  FS        + +      + +  D    N
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256


>gi|302839635|ref|XP_002951374.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis]
 gi|300263349|gb|EFJ47550.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis]
          Length = 361

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 169 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARIIRE 220


>gi|21228787|ref|NP_634709.1| transposase [Methanosarcina mazei Go1]
 gi|20907304|gb|AAM32381.1| Transposase [Methanosarcina mazei Go1]
          Length = 195

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLA---NIWSDKSR--------STRFSNIAKSLDSILID-------TR 108
           V+L+GP G GKS LA    I + K+               +  +    +++         
Sbjct: 43  VVLLGPPGVGKSHLAIALGIEAVKAGISVYFTNTGNLIERLKLANREGMLEKKLRDLMKY 102

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           K +++++I  L F++     LF +I+       S ++T+      WG    D
Sbjct: 103 KVLMIDEIGYLPFDEEGAHCLFQLISR-RYEKCSTILTSNKSYGEWGEIFKD 153


>gi|114331074|ref|YP_747296.1| AAA ATPase [Nitrosomonas eutropha C91]
 gi|114308088|gb|ABI59331.1| AAA ATPase [Nitrosomonas eutropha C91]
          Length = 1061

 Score = 41.3 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----LEDID- 117
             R+++L+G SG+GK+ L   + + +        A    +  I           ++ +D 
Sbjct: 65  SGRIMLLLGESGAGKTHLMRAFRNYTHEKSLGYFAYMQMTSSISNYASYALHYTIDSLDK 124

Query: 118 ---LLDFNDTQLFHIINSIHQYD 137
               ++ + T L H+ N++ +  
Sbjct: 125 PYCAINGSTTGLMHLSNALIERR 147


>gi|328949957|ref|YP_004367292.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450281|gb|AEB11182.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis
           DSM 14884]
          Length = 630

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+LVGP GSGK+ +A   + ++R    +        + +      + +
Sbjct: 188 RGVLLVGPPGSGKTHIARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 237


>gi|300865058|ref|ZP_07109884.1| putative Superfamily I DNA and RNA helicases and helicase
           subunits-like [Oscillatoria sp. PCC 6506]
 gi|300336922|emb|CBN55034.1| putative Superfamily I DNA and RNA helicases and helicase
           subunits-like [Oscillatoria sp. PCC 6506]
          Length = 1728

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + +  +DLL+  A E  V  +++  S P  +V++ GP G+GK+           +
Sbjct: 580 PLQTTVKLKPEDLLLSGANEDQVAAVEAVLSAPD-LVLIQGPPGTGKT--------TVIA 630

Query: 91  TRFSNIAKSLDSILIDTRKPVLLEDI 116
                +A      LI ++  + +++ 
Sbjct: 631 EISYQVALRGGRTLIASQANLAVDNA 656


>gi|298346900|ref|YP_003719587.1| ATP-binding protein [Mobiluncus curtisii ATCC 43063]
 gi|298236961|gb|ADI68093.1| ATP-binding protein [Mobiluncus curtisii ATCC 43063]
          Length = 250

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 24/111 (21%)

Query: 67  VILVGPSGSGKSCL-------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107
           +IL+GP G+GK+ L                   A  W  ++  T  ++   +     +  
Sbjct: 103 IILLGPPGTGKTHLAVSRGMKVIEQNTNVLFNTAQGW-IETLQTAHNHAQLAQALKRLKK 161

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
              +++++   L  +       F +I+  ++   SL++T+      WG  L
Sbjct: 162 YPLLIIDEFGYLPIDADAANLFFQLISDRYEQG-SLIITSNLPFSQWGEIL 211


>gi|303271571|ref|XP_003055147.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463121|gb|EEH60399.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 941

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 34/160 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           V+L GP G+GK+ LA   + ++    F       + + +                     
Sbjct: 476 VLLSGPPGTGKTLLARAVAGEAGVPFFYRAGSEFEEMFVGVGSKRVRQLFAAAKKKTPCI 535

Query: 111 VLLEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWG--VCLPD 157
           V +++ID +  +              L   ++   Q +  +++ A   P      +  P 
Sbjct: 536 VFIDEIDAVGTSRKAFETQSRKTLNQLLTEMDGFEQNEGIIVIAATNIPEQLDPALTRPG 595

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              RL     + +  PD     +++    AD+ + +D  +
Sbjct: 596 RFDRL-----IHVPNPDIGGRREILRHYLADKPVALDVDV 630


>gi|3426264|gb|AAC32257.1| cell division protein [Mycobacterium smegmatis]
          Length = 769

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 64/269 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K++ +QL    P+         D          D L + +  QA+         P  V+ 
Sbjct: 147 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 200

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112
           L GP G+GK+ LA   + ++    F+        + +                     + 
Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIF 260

Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +++ID +               +  L  +   ++        +L+ A   P      L  
Sbjct: 261 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPAL-- 318

Query: 158 LCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR-MERSLVFAE 213
               L+       + +S PD      V+      + I  D  L   + +R +  S     
Sbjct: 319 ----LRPGRFDRQIPVSNPDLAGRRAVLKVHSQGKPIAPDADL-DGLAKRTVGMSGADLA 373

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            +   ++  AL         +    L+E 
Sbjct: 374 NV---INEAALLTARENGTVITGPALEEA 399


>gi|89100968|ref|ZP_01173813.1| ATPase, AAA family domain protein [Bacillus sp. NRRL B-14911]
 gi|89084304|gb|EAR63460.1| ATPase, AAA family domain protein [Bacillus sp. NRRL B-14911]
          Length = 423

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 69/177 (38%), Gaps = 30/177 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKP----VLLEDID 117
           +IL GP G GK+ +A+  +  ++         +N  K ++ +  + +      +LL+++ 
Sbjct: 43  MILYGPPGIGKTSIASAIAGSTQFAFRTLNAVTNNKKDMEVVAAEAKMSGKVILLLDEVH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD              +    +L+  T      +     P + SR     + ++    +
Sbjct: 103 RLDKAKQDFLLPY---LENGMIVLIGATTSNPYHAIN---PAIRSR---CQIFELKPLSE 153

Query: 176 DFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           + ++K +++   D+       ++ ID+   +++      S       ++ ++   LS
Sbjct: 154 EDIKKSLLRALQDKENGFGNEKVEIDEDALSHLA---SSSNGDVRSSLNALELAVLS 207


>gi|70991034|ref|XP_750366.1| proteasome regulatory particle subunit Rpt5 [Aspergillus fumigatus
           Af293]
 gi|66847998|gb|EAL88328.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus
           fumigatus Af293]
 gi|159130840|gb|EDP55953.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus
           fumigatus A1163]
          Length = 464

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 250 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 310 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRIDVLDPAL--L 367

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++    ++      R++ +D  +
Sbjct: 368 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVDDAV 403


>gi|325983015|ref|YP_004295417.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325532534|gb|ADZ27255.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
          Length = 272

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-----------RSTRFSNIAKSLDSILIDTRKPVLLED 115
           ++LVG +G+GK+ LA                   +   +N  +   S     R  + L  
Sbjct: 105 LVLVGGTGTGKTHLAIAIGTLGIQHHNKKVRFFSAIDLANNLEQEKSTGKQGRLALRLLQ 164

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           IDL+  ++             LFH+++ +++  +S+++T       W 
Sbjct: 165 IDLVILDELGYLPFSQAGGALLFHLLSRLYER-TSVIITTNLAFAEWS 211


>gi|322689829|ref|YP_004209563.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F]
 gi|320461165|dbj|BAJ71785.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F]
          Length = 697

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310

Query: 125 QL 126
            +
Sbjct: 311 AI 312


>gi|317482115|ref|ZP_07941139.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916474|gb|EFV37872.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 697

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310

Query: 125 QL 126
            +
Sbjct: 311 AI 312


>gi|303389385|ref|XP_003072925.1| transitional endoplasmic reticulum ATPase [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303302068|gb|ADM11565.1| transitional endoplasmic reticulum ATPase [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 506

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 16/98 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------IAKSLDSILIDTRKPVLLED 115
           P   ++L G SG GK+ L N  S + +             + +S     +  +  VL+ED
Sbjct: 70  PPSTLLLHGVSGVGKTFLVNCISQEYKLPIVKACVDSDKELRESFRKSSLLEKSIVLIED 129

Query: 116 IDLLDFNDTQLF-----HIINSIHQYDSSLLM-TARTF 147
           ID L  +D ++      ++ N       S+++ TAR  
Sbjct: 130 IDTLGEDDKKVISQLSEYLENY---KGKSIVIATARNP 164


>gi|300814179|ref|ZP_07094462.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511836|gb|EFK39053.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 651

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 69/210 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 214 ALLVGPPGTGKTLLAKAVASEAEVPFFSISGSEFVEMFVGLGAAKVRDLFKQAEEKAPCI 273

Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +           ND       QL   ++        +++ A   P S     
Sbjct: 274 IFIDEIDTIGKKRDGAGFSGNDEREQTLNQLLSEMDGFDAKKGVVILAATNRPDSLDPAL 333

Query: 152 ----------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
                      V LPDL  R+                   I+K+ A++ I  D+    Y 
Sbjct: 334 LRPGRFDRRIPVELPDLAGRI------------------AILKVHAEK-IKKDED-IDY- 372

Query: 202 VQRMERSLVFA--EKLVDKMDNLALSRGMG 229
             ++ RS   A    L + ++  AL     
Sbjct: 373 -GQVGRSTAGASGADLANMVNEAALRAVRE 401


>gi|300176500|emb|CBK24165.2| unnamed protein product [Blastocystis hominis]
          Length = 291

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 62/151 (41%), Gaps = 28/151 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GK+ LA   + +S +  FS  + +L S  +   + ++          
Sbjct: 28  PPKGILLFGPPGTGKTMLAKAVATESNAFFFSVSSSTLTSKWVGESEKIV---------- 77

Query: 123 DTQLFHIINSIHQYDSSLL--------MTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
              LF      ++   S+L        +TAR+   +          RLK   +V++    
Sbjct: 78  -RALF---RVAYRNQPSILFIDEIDSILTARSENENESSR------RLKTEFMVQLDGAS 127

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
               E+V++    +R   +D  +   + +R+
Sbjct: 128 TTGEERVLIMGATNRPFELDDAVIRRMARRV 158


>gi|302816732|ref|XP_002990044.1| hypothetical protein SELMODRAFT_130943 [Selaginella moellendorffii]
 gi|300142164|gb|EFJ08867.1| hypothetical protein SELMODRAFT_130943 [Selaginella moellendorffii]
          Length = 403

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + V+L GP G+GK+ LA   + +SR+   +    +L
Sbjct: 117 PQKGVLLYGPPGTGKTLLAKAIAKESRAVFINVRIATL 154


>gi|296424347|ref|XP_002841710.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637957|emb|CAZ85901.1| unnamed protein product [Tuber melanosporum]
          Length = 455

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  ++ GP G+GK+ LA   + +S++T        L  + I     ++ +
Sbjct: 235 PPKGALMYGPPGTGKTLLARACAAQSKATFLKIAGPQLVQMFIGDGAKLVRD 286


>gi|291516359|emb|CBK69975.1| membrane protease FtsH catalytic subunit [Bifidobacterium longum
           subsp. longum F8]
          Length = 697

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310

Query: 125 QL 126
            +
Sbjct: 311 AI 312


>gi|282882852|ref|ZP_06291457.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis
           315-B]
 gi|281297263|gb|EFA89754.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis
           315-B]
          Length = 651

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 69/210 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 214 ALLVGPPGTGKTLLAKAVASEAEVPFFSISGSEFVEMFVGLGAAKVRDLFKQAEEKAPCI 273

Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +           ND       QL   ++        +++ A   P S     
Sbjct: 274 IFIDEIDTIGKKRDGAGFSGNDEREQTLNQLLSEMDGFDAKKGVVILAATNRPDSLDPAL 333

Query: 152 ----------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
                      V LPDL  R+                   I+K+ A++ I  D+    Y 
Sbjct: 334 LRPGRFDRRIPVELPDLAGRI------------------AILKVHAEK-IKKDED-IDY- 372

Query: 202 VQRMERSLVFA--EKLVDKMDNLALSRGMG 229
             ++ RS   A    L + ++  AL     
Sbjct: 373 -GQVGRSTAGASGADLANMVNEAALRAVRE 401


>gi|239621579|ref|ZP_04664610.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515454|gb|EEQ55321.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 697

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310

Query: 125 QL 126
            +
Sbjct: 311 AI 312


>gi|207347038|gb|EDZ73351.1| YDL126Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 724

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 50/166 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366

Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181
                       + +PD   RL+   V++I      L DD  LE +
Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEAL 409



 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PS+ V+  GP G+GK+ LA   + +  +                   SNI    D     
Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579

Query: 107 TRKPVLLEDIDLLD 120
               V L+++D + 
Sbjct: 580 APTVVFLDELDSIA 593


>gi|20043268|gb|AAM09086.1| Tpase2 [Frankia sp. Ar15]
          Length = 435

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 31/144 (21%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
           F+      + RD   V + +  +  +  +        V+L+GP G GK+ LA     K+ 
Sbjct: 255 FNLDHLPSLRRD---VLAHLATSTYIAKA------GNVVLLGPPGVGKTHLAIGLGVKAT 305

Query: 90  STRFSNI----------------AKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFH 128
              +S +                A  LD  L  I   K ++++++  + F+       F 
Sbjct: 306 HAGYSVLFDTASNWITRLADAHHAGRLDEELRKIRRYKLIIIDEVGYIPFDQDAANLFFQ 365

Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152
           +I +      S+L+T+      WG
Sbjct: 366 LI-ASRYEQGSVLVTSNLPFGRWG 388


>gi|294625024|ref|ZP_06703674.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294666603|ref|ZP_06731842.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292600699|gb|EFF44786.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292603623|gb|EFF47035.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 429

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +  + +  F  I+  L    +   + VL E           +
Sbjct: 34  MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 90

Query: 127 F-----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
                 H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 91  LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 147

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     A+R +      + +     I    +  +  A  L++    LA 
Sbjct: 148 PQDIVEALQRAL---RDAERGLGTETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA 204

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 205 GEGGEITPQTLLQVLADRTR 224


>gi|253742198|gb|EES99044.1| Katanin [Giardia intestinalis ATCC 50581]
          Length = 506

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R V+L GP G+GK+ LA   + ++  T F+  A  ++S
Sbjct: 245 PWRGVLLFGPPGTGKTLLAKAIAMQAGFTFFAASASVIES 284


>gi|167570877|ref|ZP_02363751.1| recombination factor protein RarA [Burkholderia oklahomensis C6786]
          Length = 436

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 26/172 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMDQARDTLNRTGRH-TIL 108

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162

Query: 173 PDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             +D L +++ +    A   +  + K    +V   +     A + ++ ++  
Sbjct: 163 LTEDELRQLLARAQDTALAGLAFEDKAVDTLVGYAD---GDARRFLNLLEQA 211


>gi|154331635|ref|XP_001561635.1| 26S protease regulatory subunit [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134058954|emb|CAM36781.1| putative 26S protease regulatory subunit [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 396

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +    +     +A S+    I     V+ E
Sbjct: 177 VLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIRE 224


>gi|123446639|ref|XP_001312068.1| proteasome endopeptidase complex [Trichomonas vaginalis G3]
 gi|121893902|gb|EAX99138.1| proteasome endopeptidase complex, putative [Trichomonas vaginalis
           G3]
          Length = 391

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 15/75 (20%)

Query: 63  PSRV-VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P+    +L GP G+GK+ +A   +  + +     +A SL    +     ++ E       
Sbjct: 167 PAPKGALLYGPPGTGKTLIARAIAANTNAKFLKVVAASLFDRYVGESARIVRE------- 219

Query: 122 NDTQLFHIINSIHQY 136
                  + N     
Sbjct: 220 -------MFNYARDN 227


>gi|169848944|ref|XP_001831176.1| valosin-containing protein [Coprinopsis cinerea okayama7#130]
 gi|116507744|gb|EAU90639.1| valosin-containing protein [Coprinopsis cinerea okayama7#130]
          Length = 816

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 241 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 301 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 360

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    V I +PD     +++      + + +   +
Sbjct: 361 LR----RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLADDV 398



 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G+GK+ LA   +++  +   S     L ++     +  + +  D  
Sbjct: 514 PSKGVLFYGPPGTGKTLLAKAIANECNANFISIKGPELLTMWFGESEANVRDVFDKA 570


>gi|91774038|ref|YP_566730.1| AAA ATPase [Methanococcoides burtonii DSM 6242]
 gi|91713053|gb|ABE52980.1| AAA ATPase [Methanococcoides burtonii DSM 6242]
          Length = 371

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 34/157 (21%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------- 109
           + +  W  R ++  GPSG+GK+ LA   ++K+        A  L    +           
Sbjct: 145 EKFGKWAPRNILFFGPSGTGKTMLAKALANKTEVPLLPIKATQLIGEFVGEGSRHIHQLY 204

Query: 110 ---------PVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTF 147
                     + ++++D +  +                L   ++ I +      + A   
Sbjct: 205 ERAEEMQPCIIFIDELDAIALDRRNQELRGDVAEIVNALLTEMDGIVERRGVCTIAATNR 264

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           P S     P + SR +    ++ +LPD+     +I K
Sbjct: 265 PNSLD---PAVRSRFEE--EIEFALPDEQNRYLIIEK 296


>gi|46190307|ref|ZP_00206422.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Bifidobacterium longum DJO10A]
          Length = 436

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 28/144 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA I + +S          ++  K +  +L    + ++         
Sbjct: 40  VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 93

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 94  QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 149

Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192
           +   + D  +E V   +  DR + 
Sbjct: 150 LESLEPDQLIELVQRALTDDRGLR 173


>gi|320041387|gb|EFW23320.1| ribosome biogenesis ATPase [Coccidioides posadasii str. Silveira]
          Length = 762

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  D  
Sbjct: 228 PPRGVLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 284



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 537 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 582


>gi|319404398|emb|CBI78001.1| ATPase, AAA family [Bartonella rochalimae ATCC BAA-1498]
          Length = 439

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + + ++     + S I   +  +    +K   +    
Sbjct: 50  ASGSFSSMIFWGPPGTGKTTVARLLALETNFAFEQVSAIFTGISEL----KKIFEVARAR 105

Query: 118 LLDFNDTQLF----HIINS--------IHQYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
           L+    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 106 LMSGCQTLLFIDEIHRFNRSQQDSFLPFMEDGTIILVGATTENPSFELNAA---LLSR-- 160

Query: 164 AATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D+  L+ ++ +      R + +D      +++  +     A  L + +  
Sbjct: 161 -ARVLTFRAHDNASLDILLKRAEKVEGRSLPLDDHAREVLIRISDGDARAALTLAEDIWR 219

Query: 222 LA 223
            A
Sbjct: 220 AA 221


>gi|315924180|ref|ZP_07920406.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622582|gb|EFV02537.1| replication-associated recombination protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 449

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            I  GP G+GK+ LA I + ++++   S  A +     I        +++       T L
Sbjct: 57  AIFYGPPGTGKTTLAKIIASQTKAAFHSLNAVTSGKKEISEVIAEARQNM-AFYGRKTIL 115

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +    +L+ A T    + +    L SR   +T+ + +   
Sbjct: 116 FIDEVHRFNKAQQDALLPSVEDGLIILIGATTENPYFEINAA-LISR---STIFEFNPLS 171

Query: 175 DDFLEKVIVKMFAD 188
           D  +E ++     D
Sbjct: 172 DAAIETILKDALTD 185


>gi|313680777|ref|YP_004058516.1| membrane protease ftsh catalytic subunit [Oceanithermus profundus
           DSM 14977]
 gi|313153492|gb|ADR37343.1| membrane protease FtsH catalytic subunit [Oceanithermus profundus
           DSM 14977]
          Length = 630

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+LVGP GSGK+ +A   + ++R    +        + +      + +
Sbjct: 190 RGVLLVGPPGSGKTHIARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 239


>gi|307596113|ref|YP_003902430.1| AAA family ATPase [Vulcanisaeta distributa DSM 14429]
 gi|307551314|gb|ADN51379.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta distributa DSM
           14429]
          Length = 748

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 28/114 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L+GP G+GK+ LA   + ++ +   S     +                +    +
Sbjct: 214 PPKGVLLIGPPGTGKTLLAKAVASEANAYFISINGPEIMSKYYGESEAKLREIFEEAKKN 273

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP 148
               + +++ID +                 QL  +++ + +    +++ A   P
Sbjct: 274 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRP 327



 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 503 PPKGILLFGPPGTGKTLLAKAVATESNANFIA 534


>gi|307111340|gb|EFN59574.1| hypothetical protein CHLNCDRAFT_132927 [Chlorella variabilis]
          Length = 538

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+L GP G+GK+ LA   + ++ +T  +  A     + +      + +
Sbjct: 92  RGVLLCGPPGTGKTLLARAVAGEAGATFIALNASEFVEMFVGVGASRVRD 141


>gi|302807883|ref|XP_002985635.1| hypothetical protein SELMODRAFT_45400 [Selaginella moellendorffii]
 gi|300146544|gb|EFJ13213.1| hypothetical protein SELMODRAFT_45400 [Selaginella moellendorffii]
          Length = 342

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 36/174 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   + ++R+   +    SL S  +   + ++          
Sbjct: 114 PQKGVLLYGPPGTGKTLLAKALAKEARAVFINVQIASLMSKWLGDAQKLVTAVFTLAHKL 173

Query: 113 ------LEDIDLLDFND------------TQLFHIIN--SIHQYDSSLLMTARTFPVSWG 152
                 ++++D                  T+   + +  +  Q    L++ A   P  W 
Sbjct: 174 QPSIIFIDEVDSFLGRRGVTSHEVMTQMKTEFMALWDGLTTDQNARVLVLAATNRP--WE 231

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
           +    L  RL  A   +I +PD      ++  +  + ++  D     Y+    +
Sbjct: 232 LDEAILR-RLPRA--FEIGMPDVKQRASILQVLLKEERVEDDLD-IDYLASLCD 281


>gi|302497219|ref|XP_003010610.1| hypothetical protein ARB_03311 [Arthroderma benhamiae CBS 112371]
 gi|291174153|gb|EFE29970.1| hypothetical protein ARB_03311 [Arthroderma benhamiae CBS 112371]
          Length = 908

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 346 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 405

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 406 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 465

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    V I +PD     +++      + + + + +
Sbjct: 466 LR----RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 503


>gi|283783577|ref|YP_003374331.1| ATP-dependent metallopeptidase HflB [Gardnerella vaginalis 409-05]
 gi|298252656|ref|ZP_06976450.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis 5-1]
 gi|283441441|gb|ADB13907.1| ATP-dependent metallopeptidase HflB [Gardnerella vaginalis 409-05]
 gi|297533020|gb|EFH71904.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis 5-1]
          Length = 769

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    ++        + +      + E  D    N  
Sbjct: 261 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRELFDEAKKNAP 320

Query: 125 QL 126
            +
Sbjct: 321 AI 322


>gi|242310186|ref|ZP_04809341.1| recombination factor protein RarA [Helicobacter pullorum MIT
           98-5489]
 gi|239523483|gb|EEQ63349.1| recombination factor protein RarA [Helicobacter pullorum MIT
           98-5489]
          Length = 388

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 71/179 (39%), Gaps = 27/179 (15%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLEDIDLL 119
            GP GSGK+  A + +++     ++  A S  S  +            +  + ++++  L
Sbjct: 44  FGPPGSGKTTAATLIANELGYPFYNLNATSFKSEDLRNILKNHQNTLQKPLIFIDEVHRL 103

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    +L   I    +   +L++ A T    + +    + SR   + V +  L   + L+
Sbjct: 104 NKAQQELLLPI---MENHQALILGASTENPFFALTNA-IRSR---SFVFEFHLLKQEELK 156

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           +++ +        +  ++  ++   +  S   A  +++ +D  ALS    ++  L    
Sbjct: 157 EILKEY------DLKDEIREFL---ISTSGGDARAMLNLLD-CALSSNKPLSIELLKNF 205


>gi|218283933|ref|ZP_03489801.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989]
 gi|218215512|gb|EEC89050.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989]
          Length = 651

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 67/195 (34%), Gaps = 39/195 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           +++VGP G+GK+ LA   + ++    FS        + + T                   
Sbjct: 196 ILMVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGTGASRVRDMFKTAQKSAPCI 255

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++ +      +++ A   P      L
Sbjct: 256 IFIDEIDAVGRQRGAGMGGGNDEREQTLNQLLVEMDGMTDNAGIVVIAATNRPDVLDPAL 315

Query: 156 PDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L S R      V +  PD    E ++     ++++  D  LA  + +R       A  
Sbjct: 316 --LRSGRFDRRVTVSL--PDIKGREAILHVHARNKKLASDVSLAN-LAKRTP-GFSGA-D 368

Query: 215 LVDKMDNLALSRGMG 229
           L + ++  A+     
Sbjct: 369 LANVLNEGAILAVRK 383


>gi|162456465|ref|YP_001618832.1| recombination factor protein RarA [Sorangium cellulosum 'So ce 56']
 gi|161167047|emb|CAN98352.1| ATPase [Sorangium cellulosum 'So ce 56']
          Length = 460

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSILIDTRKPVLLEDIDLL 119
             +IL GP G+GK+ LA + +  + +      A       L  IL   R     E    +
Sbjct: 73  PSMILWGPPGAGKTTLARVVAHTTNARFVPFNAVLGGVPELREILAQARAARSYEGKRTI 132

Query: 120 DFNDTQLFHIINSIHQY 136
            F D    H  N   Q 
Sbjct: 133 LFVDEI--HRFNKAQQD 147


>gi|147673167|ref|YP_001216577.1| recombination factor protein RarA [Vibrio cholerae O395]
 gi|262170267|ref|ZP_06037954.1| ATPase AAA family [Vibrio cholerae RC27]
 gi|146315050|gb|ABQ19589.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227012923|gb|ACP09133.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|262021282|gb|EEY39996.1| ATPase AAA family [Vibrio cholerae RC27]
          Length = 449

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFADRQIFID-------KKLAAYIV------QRMERSLVFAEKLVDKM 219
            +   + + + +  AD +  +          +   +        RM  + +     + + 
Sbjct: 166 LNQQEILQALHQAIADTECGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225

Query: 220 DNLALSRGMGITRSLAAEV 238
           D+        I   L AEV
Sbjct: 226 DD---QGRKQIDLPLLAEV 241


>gi|322691768|ref|YP_004221338.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456624|dbj|BAJ67246.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 696

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 250 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 309

Query: 125 QL 126
            +
Sbjct: 310 AI 311


>gi|302773239|ref|XP_002970037.1| hypothetical protein SELMODRAFT_146742 [Selaginella moellendorffii]
 gi|300162548|gb|EFJ29161.1| hypothetical protein SELMODRAFT_146742 [Selaginella moellendorffii]
          Length = 428

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 204 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 262

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 263 KACIVFFDEVDAIGGARFDDGIGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 322

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 323 DPALLRPGRLDRKVEFGLPDLDSR 346


>gi|302806994|ref|XP_002985228.1| hypothetical protein SELMODRAFT_181466 [Selaginella moellendorffii]
 gi|300147056|gb|EFJ13722.1| hypothetical protein SELMODRAFT_181466 [Selaginella moellendorffii]
          Length = 428

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 204 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 262

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 263 KACIVFFDEVDAIGGARFDDGIGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 322

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL SR
Sbjct: 323 DPALLRPGRLDRKVEFGLPDLDSR 346


>gi|254584118|ref|XP_002497627.1| ZYRO0F09900p [Zygosaccharomyces rouxii]
 gi|238940520|emb|CAR28694.1| ZYRO0F09900p [Zygosaccharomyces rouxii]
          Length = 434

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            GP G+GK+ LA   + ++ +T     A  L  + I     ++ +
Sbjct: 221 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGAKLVRD 265


>gi|311114326|ref|YP_003985547.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019]
 gi|310945820|gb|ADP38524.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019]
          Length = 751

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    ++        + +      + E  D    N  
Sbjct: 277 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRELFDEAKKNAP 336

Query: 125 QL 126
            +
Sbjct: 337 AI 338


>gi|261367566|ref|ZP_05980449.1| ATPase, AAA family [Subdoligranulum variabile DSM 15176]
 gi|282570353|gb|EFB75888.1| ATPase, AAA family [Subdoligranulum variabile DSM 15176]
          Length = 420

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 27/194 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I  GPSG GK+ +A+I +  S          +  +  I +    +L DI  L  +  
Sbjct: 39  PNMIFYGPSGVGKTTVASIIAAGSGMQLHKLNGTTASTSDIKS----VLADIGTLGASGG 94

Query: 125 QLFHI-----INSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            L ++      N   Q          ++ + A T    +      L SR    TV +   
Sbjct: 95  ILLYLDEIQYFNKRQQQSLLECVEQGTVTLIASTTENPYFYVYNALLSR---CTVFEFKS 151

Query: 173 PDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
              + + K I    A         I I      Y+ Q     +  A   ++     A + 
Sbjct: 152 LTAEDIRKGIQNAAARLGAEDKVPILIPDDALDYLAQSAGGDMRKALGNLEFAVTAAPAE 211

Query: 227 --GMGITRSLAAEV 238
                +T  +  +V
Sbjct: 212 NGQRTVTLDMVQQV 225


>gi|289582097|ref|YP_003480563.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
 gi|289531650|gb|ADD06001.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
          Length = 405

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +   +   +
Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFKVAREH 241

Query: 123 DTQL 126
           +  +
Sbjct: 242 EPAV 245


>gi|183235205|ref|XP_001914172.1| 26S protease regulatory subunit 7 [Entamoeba histolytica HM-1:IMSS]
 gi|169800682|gb|EDS89052.1| 26S protease regulatory subunit 7, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 417

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   ++++ ST    I   L    +     ++ +  D+ 
Sbjct: 193 PPKGVLLYGPPGTGKTLLARAVANRTESTFVRVIGSELVQKYVGEGAKMVRDLFDMA 249


>gi|167392334|ref|XP_001740108.1| 26S protease regulatory subunit [Entamoeba dispar SAW760]
 gi|165895900|gb|EDR23483.1| 26S protease regulatory subunit, putative [Entamoeba dispar SAW760]
          Length = 417

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   ++++ ST    I   L    +     ++ +  D+ 
Sbjct: 193 PPKGVLLYGPPGTGKTLLARAVANRTESTFVRVIGSELVQKYVGEGAKMVRDLFDMA 249


>gi|156553266|ref|XP_001599519.1| PREDICTED: similar to werner helicase interacting protein [Nasonia
           vitripennis]
          Length = 462

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 36/175 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA----KSLDSILIDTRKPVLLEDIDLLD 120
             +IL GP G GK+ L N+   +S+      +      +  S + D RK V   +     
Sbjct: 104 PSMILWGPPGCGKTSLVNVIMQESKKLSDIPVKFIKLSATTSSINDVRKAVTEAENQAKQ 163

Query: 121 FNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSR----- 161
              T +F    H  N +         +  + +L+  T              L SR     
Sbjct: 164 GRRTVVFMDEIHRFNKLQQDIFLPHVEAGTFILIGATTENPSSGLNSA---LLSRCRVFV 220

Query: 162 --------LKAATVVKISLPDDDFLE--KVIVKMFADRQIFIDKKLAAYIVQRME 206
                   L +  +  I + D + +   ++I K+ +D + F+++K+  ++ +  +
Sbjct: 221 LKKLQKENLVSILMKAIKMMDGEVVTESEIISKVDSDTKFFVEQKILEWLAEACD 275


>gi|149004095|ref|ZP_01828900.1| putative phage DNA replication protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|225857843|ref|YP_002739353.1| gp21 [Streptococcus pneumoniae 70585]
 gi|303255440|ref|ZP_07341504.1| hypothetical protein CGSSpBS455_08150 [Streptococcus pneumoniae
           BS455]
 gi|303259322|ref|ZP_07345300.1| gp21 [Streptococcus pneumoniae SP-BS293]
 gi|303261078|ref|ZP_07347027.1| gp21 [Streptococcus pneumoniae SP14-BS292]
 gi|303263406|ref|ZP_07349329.1| gp21 [Streptococcus pneumoniae BS397]
 gi|303265571|ref|ZP_07351471.1| gp21 [Streptococcus pneumoniae BS457]
 gi|303267871|ref|ZP_07353673.1| gp21 [Streptococcus pneumoniae BS458]
 gi|147757907|gb|EDK64916.1| putative phage DNA replication protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|225721762|gb|ACO17616.1| gp21 [Streptococcus pneumoniae 70585]
 gi|302597580|gb|EFL64662.1| hypothetical protein CGSSpBS455_08150 [Streptococcus pneumoniae
           BS455]
 gi|302637915|gb|EFL68401.1| gp21 [Streptococcus pneumoniae SP14-BS292]
 gi|302639740|gb|EFL70197.1| gp21 [Streptococcus pneumoniae SP-BS293]
 gi|302642567|gb|EFL72912.1| gp21 [Streptococcus pneumoniae BS458]
 gi|302645011|gb|EFL75258.1| gp21 [Streptococcus pneumoniae BS457]
 gi|302647179|gb|EFL77403.1| gp21 [Streptococcus pneumoniae BS397]
          Length = 256

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           A R+   W       ++L G +G+GKS LA
Sbjct: 106 AKRICREWFEGARNNIVLQGEAGTGKSHLA 135


>gi|90413225|ref|ZP_01221220.1| putative ATPase protein [Photobacterium profundum 3TCK]
 gi|90325777|gb|EAS42235.1| putative ATPase protein [Photobacterium profundum 3TCK]
          Length = 446

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + ++ + +   R S +   +  I I   K       + +    T
Sbjct: 52  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIDKA----RENKMAGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSR-----LKAA 165
            LF    H  N   Q        D ++     T              L SR     LK+ 
Sbjct: 108 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSRARVYKLKSL 164

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV------QRMERSLVFAEKLVDKM 219
             V++    D  L+    +  +D  +     +   +        RM  SL + E+L+D M
Sbjct: 165 ETVEVLAVVDQALKDS-SRGISDTNLEFVDDVKERLSELVCGDARM--SLNYLEQLID-M 220

Query: 220 DNLALSRGMGITRSLAAEV 238
                +    IT  L AEV
Sbjct: 221 AEENKAGIKQITLELLAEV 239


>gi|89901945|ref|YP_524416.1| recombination factor protein RarA [Rhodoferax ferrireducens T118]
 gi|89346682|gb|ABD70885.1| Recombination protein MgsA [Rhodoferax ferrireducens T118]
          Length = 435

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 22/192 (11%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLLE 114
           IL GP G+GK+ +A + +D   +                  + ++  +     R  V ++
Sbjct: 53  ILWGPPGTGKTTIARLMADAFDAQFITISAVLGGVKDIREAVEQAQVAQGQGRRTIVFVD 112

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           ++   + +    F       +      + A T   S+ V    L SR   A V  +    
Sbjct: 113 EVHRFNKSQQDAFLAH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQPLA 165

Query: 175 DDFLEKVIVKMFADRQIFIDKKLA-AYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITR 232
              LE++I +  A + +   +K+A   +V   +         ++ +   A       IT 
Sbjct: 166 PQDLEQIIARALALQALPAIEKIASERLVGFADGDARRLLNTLEMLSVAATQERVSEITD 225

Query: 233 SLAAEVLKETQQ 244
               +VL E  +
Sbjct: 226 PWLQKVLGERMR 237


>gi|67479697|ref|XP_655230.1| 26s protease regulatory subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56472352|gb|EAL49843.1| 26s protease regulatory subunit [Entamoeba histolytica HM-1:IMSS]
          Length = 417

 Score = 40.9 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   ++++ ST    I   L    +     ++ +  D+ 
Sbjct: 193 PPKGVLLYGPPGTGKTLLARAVANRTESTFVRVIGSELVQKYVGEGAKMVRDLFDMA 249


>gi|297243774|ref|ZP_06927704.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis AMD]
 gi|296888195|gb|EFH26937.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Gardnerella vaginalis AMD]
          Length = 769

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    ++        + +      + E  D    N  
Sbjct: 261 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRELFDEAKKNAP 320

Query: 125 QL 126
            +
Sbjct: 321 AI 322


>gi|207724063|ref|YP_002254461.1| transposase and helper protein [Ralstonia solanacearum MolK2]
 gi|206589272|emb|CAQ36234.1| probable transposase and helper protein [Ralstonia solanacearum
           MolK2]
          Length = 578

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 409 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 463

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 464 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 521

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 522 FTQWATAFAD 531


>gi|164662603|ref|XP_001732423.1| hypothetical protein MGL_0198 [Malassezia globosa CBS 7966]
 gi|159106326|gb|EDP45209.1| hypothetical protein MGL_0198 [Malassezia globosa CBS 7966]
          Length = 778

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 192 PPRGVLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 251

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 252 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNIVVMAATNRPNSIDPA 311

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    V I +PD     +++      + + + + +
Sbjct: 312 LR----RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLAEDV 349



 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G+GK+ LA   + + ++   S     L ++     +  + +  D  
Sbjct: 465 PSKGVLFYGPPGTGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKA 521


>gi|154287624|ref|XP_001544607.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408248|gb|EDN03789.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 547

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 71/198 (35%), Gaps = 34/198 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------------IAKSLDSILIDTRKPV 111
             +IL G +G+GK+ +A + +    S                   A++ + + +  RK +
Sbjct: 165 PSMILWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVAECKKLFAEAKNELSLSGRKTI 224

Query: 112 LL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +  ++I     +   +F       +     L+ A T   S+ V    L SR        +
Sbjct: 225 IFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENPSFKVQNA-LLSR---CRTFTL 277

Query: 171 SLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVD-KMD--- 220
           +   D+ +  ++ +              +D +L  Y+    +     +  L++  MD   
Sbjct: 278 AKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMDLSR 337

Query: 221 NLALSR---GMGITRSLA 235
              ++R      +TR+L 
Sbjct: 338 REGMTREDLKKSLTRTLV 355


>gi|19112067|ref|NP_595275.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe 972h-]
 gi|74675997|sp|O43078|SUR2_SCHPO RecName: Full=Protein sur2
 gi|2894288|emb|CAA17029.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe]
          Length = 660

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + ++L GP G+GK+ LA   + ++++T FS  A SL S  +   + ++
Sbjct: 411 PVQGMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLV 460


>gi|50915051|ref|YP_061023.1| recombination factor protein RarA [Streptococcus pyogenes
           MGAS10394]
 gi|50904125|gb|AAT87840.1| ATPase, AAA family [Streptococcus pyogenes MGAS10394]
          Length = 422

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 25/176 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +R               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEITEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                + +++M   T    +    P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           ++  I    +D  R     + ID +   +IV              + +D   +S  
Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATN---GDLRSAYNSLDLAVMSTK 207


>gi|296454756|ref|YP_003661899.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184187|gb|ADH01069.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 697

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310

Query: 125 QL 126
            +
Sbjct: 311 AI 312


>gi|227546578|ref|ZP_03976627.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133974|ref|YP_004001313.1| hflb [Bifidobacterium longum subsp. longum BBMN68]
 gi|227212895|gb|EEI80774.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|311773273|gb|ADQ02761.1| HflB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 696

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 250 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 309

Query: 125 QL 126
            +
Sbjct: 310 AI 311


>gi|195122172|ref|XP_002005586.1| GI18990 [Drosophila mojavensis]
 gi|193910654|gb|EDW09521.1| GI18990 [Drosophila mojavensis]
          Length = 752

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D +L+    
Sbjct: 353 VLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEVLVGQGA 395


>gi|167624139|ref|YP_001674433.1| recombination factor protein RarA [Shewanella halifaxensis HAW-EB4]
 gi|167354161|gb|ABZ76774.1| AAA ATPase central domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 443

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 29/193 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++  GP G+GK+ LA + +  + +   R S +   +  I          +++       T
Sbjct: 52  MMFWGPPGTGKTTLAELVAHYANAHVERISAVTSGVKEIRSAIEHA---KNVAQSRGQRT 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + + + A T   S+ +    L SR   A V  I  
Sbjct: 109 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYLIKQ 164

Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            + + + +++ +   D       R++ +   ++  + Q  +     A  L++ M ++ L 
Sbjct: 165 LEPEEIGQIVQQALEDEERGLGKRKLLLPADVSLKLAQTCDGDARKALNLIELMSDM-LK 223

Query: 226 RGMGITRSLAAEV 238
            G   T  +   V
Sbjct: 224 DGEAFTEEMIIAV 236


>gi|167536672|ref|XP_001750007.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771517|gb|EDQ85182.1| predicted protein [Monosiga brevicollis MX1]
          Length = 3427

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 22/160 (13%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-----LEDID 117
            P RV++LV P G+GKS  AN     S          S D +++++   +L     +E+  
Sbjct: 2763 PRRVMLLVSPPGAGKSHTANEIMRDSGEIICHRFDCSDDRLVMNSLSSLLATYFSVENRP 2822

Query: 118  LLDFNDTQLFH---------IINSI--HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
             L   D   FH         + N I       ++L+            L DL   +++  
Sbjct: 2823 SLLVADE--FHLLGLRHKRELFNWITPRLSWLNVLLIGNRKLRQDSGLLDDLRRHVQSTG 2880

Query: 167  V----VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
                 VKI   +       IV+   D    I   L  +++
Sbjct: 2881 CTKDDVKIEEMEVQLDPNFIVQNCHDNANGIKDDLTRWLI 2920


>gi|159466984|ref|XP_001691678.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii]
 gi|158279024|gb|EDP04786.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii]
          Length = 399

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 169 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARIIRE 220


>gi|113473936|ref|YP_718199.1| IstB-like ATP-biding protein [Sphingomonas sp. KA1]
 gi|112821616|dbj|BAF03487.1| IstB-like ATP-biding protein [Sphingomonas sp. KA1]
          Length = 236

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 22/109 (20%)

Query: 65  RVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------LE 114
           R ++LVG +G+GK+ LA  I +   R+        ++D +     +  L         L 
Sbjct: 93  RNIVLVGGTGTGKTHLALAITAAVVRAGTRGRYFNTVDLVNRLEEEARLGKAGSLAAQLS 152

Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
            +DL+  ++             LFH+I+ +++  +S+++T       W 
Sbjct: 153 RLDLVVLDELGYLPFARSGGQMLFHLISKLYE-KTSVIITTNLAFGEWP 200


>gi|85372702|gb|ABC70156.1| AAA-type ATPase [uncultured prokaryote 2E01B]
          Length = 725

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 34/156 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------D 106
           P   V+L GP G+GK+ LA   + +S           L    +                 
Sbjct: 503 PPTGVLLHGPPGTGKTLLARAIAGESEVNFIQVAGPELLDRYVGESEKAVREVFERARQA 562

Query: 107 TRKPVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               V  ++ID +  +               QL    +      +  ++ A     S   
Sbjct: 563 APSIVFFDEIDAIAGDREFGGDSAVGERVVSQLLTEFDRAADDPNLAVLAATNRKESLDD 622

Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFAD 188
            L  L   RL+    V++  PD+   E ++     D
Sbjct: 623 AL--LRPGRLE--QHVEVPRPDESAREAILAVHTTD 654


>gi|23336233|ref|ZP_00121458.1| COG0465: ATP-dependent Zn proteases [Bifidobacterium longum DJO10A]
 gi|189440710|ref|YP_001955791.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A]
 gi|189429145|gb|ACD99293.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A]
          Length = 697

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310

Query: 125 QL 126
            +
Sbjct: 311 AI 312


>gi|328793565|ref|XP_392703.4| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog isoform
           1 [Apis mellifera]
          Length = 734

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       + IL+    
Sbjct: 317 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFEEILVGQGA 359


>gi|306840328|ref|ZP_07473100.1| recombination factor protein RarA [Brucella sp. BO2]
 gi|306289727|gb|EFM60916.1| recombination factor protein RarA [Brucella sp. BO2]
          Length = 437

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 49  ASGSLGSMIFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +        + +D +  A +++  +     A  L +++  
Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218

Query: 222 LA 223
            A
Sbjct: 219 AA 220


>gi|266624899|ref|ZP_06117834.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
 gi|288863218|gb|EFC95516.1| replication-associated recombination protein A [Clostridium
           hathewayi DSM 13479]
          Length = 440

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 29/177 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113
           +I  GP G GK+ LA I ++++++                  +A++     +  R  V +
Sbjct: 53  MIFWGPPGVGKTTLARIIANRTKASFVDFSAVTSGIKEIKEVMAQAERDRHMGLRTLVFV 112

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ +    L SR     V  +   
Sbjct: 113 DEIHRFNKAQQDAFLPY---VEKGSIILIGATTENPSFEINAA-LLSR---CKVFVLQAL 165

Query: 174 DDDFLEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D L  ++           D++I I + +   I Q        A   ++ ++   L
Sbjct: 166 QTDDLVILLHHALTSPLGLGDQRIGITEDMLRMIAQFAN---GDARTALNTLEMAVL 219


>gi|84997105|ref|XP_953274.1| replication factor C [Theileria annulata strain Ankara]
 gi|65304270|emb|CAI76649.1| replication factor C, putative [Theileria annulata]
          Length = 840

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 27/111 (24%)

Query: 40  RDDLLVHSA-IEQAVRLIDSWP---------SWPSRVVILVG-PSGSGKSCLANIWSD-- 86
             DLL       +++R + SW            P   ++L+G P G GK+CL N+ +   
Sbjct: 222 FSDLLTSENVNLESLRWLSSWKCSSNYLDKYEEPEHRILLIGGPPGVGKTCLVNVIAKHC 281

Query: 87  --------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
                         K R     N   S  S++ +     LLED+D L  ++
Sbjct: 282 GYNVVEINSSDDRTKGRVIPIINGVVSAGSVIPNKPNLCLLEDVDTLFGSE 332


>gi|332025898|gb|EGI66054.1| ATPase WRNIP1 [Acromyrmex echinatior]
          Length = 552

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 29/161 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             +IL GP G GK+ LAN+ +     D SR  R+  ++ ++  +  + ++ + +      
Sbjct: 140 PNMILWGPPGCGKTSLANVIAHMCKNDASRKLRYVKLSAAMAGV-QEVKEVISIASNHAK 198

Query: 120 DFNDTQLF----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
               T +F    H  N + Q                 V LP + S +          P  
Sbjct: 199 YAQHTIVFMDEIHRFNKMQQD----------------VFLPHVESGIITLIGATTENPSF 242

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
                ++ +    R I + K   A ++  ++R+++    ++
Sbjct: 243 SLNSALLSRC---RVIVLHKLSIANLLLILKRAVISLGGII 280


>gi|332188627|ref|ZP_08390344.1| istB-like ATP binding family protein [Sphingomonas sp. S17]
 gi|332188922|ref|ZP_08390624.1| istB-like ATP binding family protein [Sphingomonas sp. S17]
 gi|332011047|gb|EGI53150.1| istB-like ATP binding family protein [Sphingomonas sp. S17]
 gi|332011352|gb|EGI53440.1| istB-like ATP binding family protein [Sphingomonas sp. S17]
          Length = 175

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 22/114 (19%)

Query: 65  RVVILVGPSGSGKSCLA-----NIWSDKSRSTRFS--NIAKSLDSILIDTRK---PVLLE 114
           R V+LVG +G+GK+ LA     N+    +R   F+  ++   L+      +       L 
Sbjct: 32  RNVVLVGGTGTGKTHLATAITTNVVRAGARGRYFNTVDLVNRLEEETRLGKAGTLAAQLS 91

Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +DL+  ++             LFH+++ +++  +S+++T       W     D
Sbjct: 92  RLDLVVLDELGYLPFARSGGQLLFHLVSKLYE-QTSVIVTTNLAFGEWPTVFGD 144


>gi|321461635|gb|EFX72665.1| hypothetical protein DAPPUDRAFT_308117 [Daphnia pulex]
          Length = 389

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|320580528|gb|EFW94750.1| AAA family ATPase [Pichia angusta DL-1]
          Length = 832

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 50/166 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 247 PPKGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
           +   + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 307 SPSIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366

Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181
                       + +PD   RL+   V++I      L DD  LE +
Sbjct: 367 LRRFGRFDREVDIGIPDAAGRLE---VLRIHTKNMKLADDVDLEAL 409


>gi|302884376|ref|XP_003041084.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256721980|gb|EEU35371.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 459

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 246 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 305

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 306 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 363

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ +D  +
Sbjct: 364 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMKVDPGV 399


>gi|302520664|ref|ZP_07273006.1| ATP-binding protein [Streptomyces sp. SPB78]
 gi|302429559|gb|EFL01375.1| ATP-binding protein [Streptomyces sp. SPB78]
          Length = 491

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 42/199 (21%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLF--FSFPRCLGISRD--------DLLVHSAIEQAVRLI 56
            ++   PD ++    +    QL      P      +         +         AV  +
Sbjct: 123 GWTITTPDPREVCWRRT---QLIGELPMPARETNGKGIDLLLRLTNFASADTESLAVAWL 179

Query: 57  --DSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
                PS P     L GP G+GKS     L  I    +   R +   +      +     
Sbjct: 180 IGCLEPSVPVPAPFLTGPQGAGKSTAGRMLVRIVEGMTGDLRRAPKDEENLITAVAAGWV 239

Query: 111 VLLEDIDLLDFN---------------DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVC 154
             L+++  L  +                  LF   + +       LL+T     +  GV 
Sbjct: 240 TALDNLSHLAPDLSDLMCCIVTGAESIKRALFSDGDVVRSRYRRPLLLTG----IDVGVI 295

Query: 155 LPDLCSRLKAATVVKISLP 173
            PDL  RL     +++  P
Sbjct: 296 RPDLAERL---LTLRLERP 311


>gi|240276219|gb|EER39731.1| DNA replication ATPase [Ajellomyces capsulatus H143]
          Length = 547

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 93/265 (35%), Gaps = 46/265 (17%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDL----LVHSAIEQAVRLID 57
           N  +ED S  V   + ++  +N       +       S DD+    LV  +      LI+
Sbjct: 106 NFSEEDSSRLVKRSRTSNALENAA---PLAERMRPR-SLDDVYGQELVGPS-GVLRGLIE 160

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------------IAKSLDSIL 104
                    +IL G +G+GK+ +A + +    S                   +++ + + 
Sbjct: 161 QDR---VPSMILWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVAECKKLFSEAKNELS 217

Query: 105 IDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
           +  RK ++  ++I     +   +F       +     L+ A T   S+ V    L SR  
Sbjct: 218 LSGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENPSFKVQNA-LLSR-- 271

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVD 217
                 ++   D+ +  ++ +              +D +L  Y+    +     +  L++
Sbjct: 272 -CRTFTLAKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLE 330

Query: 218 -KMD---NLALSR---GMGITRSLA 235
             MD      ++R      +TR+L 
Sbjct: 331 LAMDLSRREGMTREDLKKSLTRTLV 355


>gi|158302095|ref|XP_321726.4| AGAP001407-PA [Anopheles gambiae str. PEST]
 gi|157012786|gb|EAA01092.4| AGAP001407-PA [Anopheles gambiae str. PEST]
          Length = 397

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|47086195|ref|NP_998085.1| ATPase WRNIP1 [Danio rerio]
 gi|45709587|gb|AAH67729.1| Zgc:85976 [Danio rerio]
          Length = 546

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 65  RVVILVGPSGSGKSCLANIWSD---KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
             +IL GP G GK+ LA+I +    +  + RF  ++ +  S+          ++   L  
Sbjct: 152 PSLILWGPPGCGKTTLAHIIASSIKQKGTGRFVTLSATSASVSDVREVIKQAQNELRLCK 211

Query: 122 NDTQLF----HIINSIHQY 136
             T LF    H  N   Q 
Sbjct: 212 RKTVLFIDEIHRFNKSQQD 230


>gi|2960216|emb|CAA11285.1| 26S proteasome regulatory ATPase subunit 10b (S10b) [Manduca sexta]
          Length = 396

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 173 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 224

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 225 ------MFNYARDHQ 233


>gi|23466230|ref|NP_696833.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium longum NCC2705]
 gi|23326975|gb|AAN25469.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium longum NCC2705]
          Length = 696

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 250 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 309

Query: 125 QL 126
            +
Sbjct: 310 AI 311


>gi|325981032|ref|YP_004293434.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325530551|gb|ADZ25272.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
          Length = 767

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-----------RSTRFSNIAKSLDSILIDTRKPVLLED 115
           ++LVG +G+GK+ LA                   +   +N  +   S     R  + L  
Sbjct: 600 LVLVGGTGTGKTHLAIAIGTLGIQHHNKKVRFFSAIDLANNLEQEKSTGKQGRLALRLLQ 659

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           IDL+  ++             LFH+++ +++  +S+++T       W 
Sbjct: 660 IDLVILDELGYLPFSQAGGALLFHLLSRLYER-TSVIITTNLAFAEWS 706


>gi|325182391|emb|CCA16844.1| cell division cycle protein 48 putative [Albugo laibachii Nc14]
          Length = 854

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS  ++L GPSG GKS LA + + ++     S
Sbjct: 611 PSSGILLYGPSGCGKSLLAKVLAARANVNFVS 642


>gi|302131225|ref|ZP_07257215.1| transposase/IS protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 269

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 25/114 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------------T 107
           ++ +GPSG GKS LA   + ++          +   +++                     
Sbjct: 104 IVFLGPSGVGKSHLAIALAYRAVMAGIKTRFVTAADLMLQLTAAHRQERLKEYFSRVVMA 163

Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVSWGVCLPD 157
              +++++I  L F  ++  LF   N +       SL++T+      W     D
Sbjct: 164 PGLLVIDEIGYLPFCRDEANLF--FNVVAKRYEQGSLILTSNLPFTQWAGTFAD 215


>gi|291516212|emb|CBK69828.1| Recombination protein MgsA [Bifidobacterium longum subsp. longum
           F8]
          Length = 444

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 28/144 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA I + +S          ++  K +  +L    + ++         
Sbjct: 48  VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 101

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 102 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 157

Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192
           +   + D  +E V   +  DR + 
Sbjct: 158 LESLEPDQLIELVQRALTDDRGLR 181


>gi|262200380|ref|YP_003271588.1| IstB domain-containing protein ATP-binding protein [Gordonia
           bronchialis DSM 43247]
 gi|262201283|ref|YP_003272491.1| IstB domain-containing protein ATP-binding protein [Gordonia
           bronchialis DSM 43247]
 gi|262201832|ref|YP_003273040.1| IstB domain-containing protein ATP-binding protein [Gordonia
           bronchialis DSM 43247]
 gi|262204082|ref|YP_003275290.1| IstB domain-containing protein ATP-binding protein [Gordonia
           bronchialis DSM 43247]
 gi|262083727|gb|ACY19695.1| IstB domain protein ATP-binding protein [Gordonia bronchialis DSM
           43247]
 gi|262084630|gb|ACY20598.1| IstB domain protein ATP-binding protein [Gordonia bronchialis DSM
           43247]
 gi|262085179|gb|ACY21147.1| IstB domain protein ATP-binding protein [Gordonia bronchialis DSM
           43247]
 gi|262087429|gb|ACY23397.1| IstB domain protein ATP-binding protein [Gordonia bronchialis DSM
           43247]
          Length = 253

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 26/122 (21%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNIAKS 99
            A+R +D+        VIL GP G GK+ +A     +             +   +++A  
Sbjct: 93  AALRWLDA-----GESVILYGPVGVGKTHVAQALGHQVALRGHDIRFVKCARMLADLAGG 147

Query: 100 LDSILIDTR-------KPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                I  R         ++++D    +        L+ +++        +++T+   P 
Sbjct: 148 HADRTIGQRMREYTRPAVLIIDDFAMREHTTTGSDDLYDLVSDRAIAAKPVILTSNRAPK 207

Query: 150 SW 151
            W
Sbjct: 208 DW 209


>gi|213691454|ref|YP_002322040.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522915|gb|ACJ51662.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457526|dbj|BAJ68147.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 697

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310

Query: 125 QL 126
            +
Sbjct: 311 AI 312


>gi|209882419|ref|XP_002142646.1| 26S proteasome regulatory subunit 7 [Cryptosporidium muris RN66]
 gi|209558252|gb|EEA08297.1| 26S proteasome regulatory subunit 7, putative [Cryptosporidium
           muris RN66]
          Length = 431

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 46/170 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 206 PPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRELFRLARSK 265

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                 ++++D +                  +  I+N +  +D+     +LM        
Sbjct: 266 KACILFIDEVDAIGGARGEESAHGDHEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 325

Query: 148 -PVSW---------GVCLPDLCSRLK-AATVVKISLPDDDFLEKVIVKMF 186
            P               LPDL  R +      ++   + D   +++ ++ 
Sbjct: 326 DPALLRPGRLDRKVEFSLPDLEGRTQIFMIHARVMNMERDIRFELLARLC 375


>gi|163790370|ref|ZP_02184802.1| ATPase, AAA family protein [Carnobacterium sp. AT7]
 gi|159874441|gb|EDP68513.1| ATPase, AAA family protein [Carnobacterium sp. AT7]
          Length = 428

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 70/191 (36%), Gaps = 36/191 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  ++ + R  N A          ++   +     +LL+++ 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKFAFRVLNAASDTKKDLQIVVEEAKMSGTVILLLDEVH 101

Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD         H+ N        +L+ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKPKQDFLLPHLEN-----GRIILIGATTENPYITIN-PAIRSR---TQIFELKPLSN 152

Query: 176 DFLEKVI-------VKMFADRQIFIDKKLAAYIVQRMERSLV-FAEKLVDKMDNL----A 223
           + ++  +        K F + Q+ I  +     +    R+        ++ ++      A
Sbjct: 153 EDIQHALWNAVNDSEKGFGNEQVTITDEA----LLHFSRATNGDLRSSLNGLELAIKSTA 208

Query: 224 LSRGMGITRSL 234
                 IT +L
Sbjct: 209 PDEKGIITITL 219


>gi|222480422|ref|YP_002566659.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453324|gb|ACM57589.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC
           49239]
          Length = 407

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   +++S +T        L    I     ++ +  +L    
Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANESDATFIKMAGSELVRKFIGEGARLVRDLFELAGER 243

Query: 123 DTQL 126
           +  +
Sbjct: 244 EPAV 247


>gi|126737180|ref|ZP_01752915.1| AAA ATPase [Roseobacter sp. SK209-2-6]
 gi|126721765|gb|EBA18468.1| AAA ATPase [Roseobacter sp. SK209-2-6]
          Length = 414

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 32/171 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS---------RSTRFSNIAKSLDSILIDTRKPVLLED 115
           R  +L GP G+GKS L    + +               S+       +   TR  + +ED
Sbjct: 222 RGYLLYGPPGTGKSSLIRALASELSLDIATLDIGRAALSDDDLREAMMCAPTRSLIAIED 281

Query: 116 IDLLDFNDTQ--------LFHIINS----IHQYDSSLLMTA----RTFPVSWGVCLPDLC 159
           +D +                 ++N+      Q   +L+MT     R  P        D+ 
Sbjct: 282 VDAVFAQRKGGEKRSGVSFSGLLNAIDGVAAQEGRALVMTTNHKERLDPALIRPGRADVH 341

Query: 160 SRLK--AATVVKIS----LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           + L    A   ++      P +  L  V  +     Q     ++  +++  
Sbjct: 342 TELGLVGAATARLLFERFFPGEADLASVFEQRL-RGQRHSPAQIQGWLLAN 391


>gi|50547977|ref|XP_501458.1| YALI0C05038p [Yarrowia lipolytica]
 gi|49647325|emb|CAG81759.1| YALI0C05038p [Yarrowia lipolytica]
          Length = 626

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 71/173 (41%), Gaps = 27/173 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSI-----LIDTRKP 110
             +I  GP G GK+ LA I +  S +            +++ K +D       L+     
Sbjct: 157 PSIIFWGPPGVGKTTLARILAKTSGNRFVELSATQNNVADVKKVIDQANNEWKLLKRGTI 216

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + ++++         +  ++ ++ + D +L+      P    V    L SR +  T+ K+
Sbjct: 217 LFIDELHRFSKAQQDV--LLPAVEKGDITLIGATTENPSFRLVGA--LTSRCRVLTLKKL 272

Query: 171 SLPDDDFLEKVIVKMF------ADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           S+ D   +++V+ +        A+ ++ +  ++  YI    +  +  A  +++
Sbjct: 273 SMKD---IKEVVERSLVKYNDTAEHEVILPTEVIDYIAGIADGDVRSALNILE 322


>gi|116753844|ref|YP_842962.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta
           thermophila PT]
 gi|116665295|gb|ABK14322.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT]
          Length = 719

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 42/178 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G+GK+ LA   + +S++   S                 + ++       
Sbjct: 484 PPKGILLYGPPGTGKTLLAKAVATESQANFISVKGPEFLSKWVGESERAVRETFRKAKQA 543

Query: 107 TRKPVLLEDIDLLD---FNDTQLFHIINSIHQY-----------DSSLLMTARTFPVSWG 152
               V  ++ID +     +     H+   +               + +++ A   P    
Sbjct: 544 APAVVFFDEIDAIAPMRSSGAADSHVTERVISQILSEMDGLEPLHNVIVIAATNRPDIID 603

Query: 153 VCLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
             L  L      R+     ++I  PD++   +++    A+R +  D  LA  I +R E
Sbjct: 604 PAL--LRPGRFDRM-----IEIGPPDEESRLEILKIHTANRPLAEDVDLAE-IAKRTE 653



 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 58/159 (36%), Gaps = 33/159 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSIL----IDTRKP 110
           V+L GP G+GK+ LA   + ++ +              +    + L  +      +    
Sbjct: 215 VLLHGPPGTGKTLLARALASETNAHFETLSGPEIMSKYYGESEERLRQLFKTAEENAPSI 274

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           +L+++ID +                 QL  +++ +      +++ A   P +     P L
Sbjct: 275 ILIDEIDSIAPKREEVTGEVERRVVAQLLALMDGLESRGKVVIIGATNRPDALD---PAL 331

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               +    ++I +P+ D   +++      R + +   +
Sbjct: 332 RRPGRFDREIEIGVPNRDARLEILQ--IHTRGMPLSSDV 368


>gi|307720121|ref|YP_003891261.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294]
 gi|306978214|gb|ADN08249.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294]
          Length = 391

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 71/179 (39%), Gaps = 21/179 (11%)

Query: 70  VGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI--------LIDTRKPVLLEDIDLL 119
            GP+G GK+ LA + +   +     F+  +  ++ +            +  + ++++  L
Sbjct: 43  YGPAGVGKTSLARVIAKTMQLPFYEFNATSLKIEQLRKIFEQYKNALQKPLIFIDEVHRL 102

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
             N  ++      + + +S L++ A T    + +    + SR   + + ++       LE
Sbjct: 103 SKNQQEVLLP---VMENNSVLIIGASTENPFYSLTSA-IRSR---SMLFELKSILHASLE 155

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238
           K++ K     +I +++    Y++     S   A  ++  ++  + +    IT      +
Sbjct: 156 KLLQKALQRGEIMLERDAQEYLIAS---SGGDARAMLKLLEFAS-NIQSKITLDTLKSL 210


>gi|302810342|ref|XP_002986862.1| hypothetical protein SELMODRAFT_182690 [Selaginella moellendorffii]
 gi|300145267|gb|EFJ11944.1| hypothetical protein SELMODRAFT_182690 [Selaginella moellendorffii]
          Length = 385

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + V+L GP G+GK+ LA   + +SR+   +    +L
Sbjct: 117 PQKGVLLYGPPGTGKTLLAKAIAKESRAVFINVRIATL 154


>gi|77918707|ref|YP_356522.1| recombination factor protein RarA/unknown domain fusion protein
           [Pelobacter carbinolicus DSM 2380]
 gi|77544790|gb|ABA88352.1| Recombination protein MgsA [Pelobacter carbinolicus DSM 2380]
          Length = 726

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 29/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121
           +I  GP G+GK+ LA + ++ + S   S  A     K L   + D R+     D   + F
Sbjct: 52  LIFYGPPGTGKTTLAQVIANSTASRFVSMNAVLSGVKDLREAIEDARQSQEYYDKRTILF 111

Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            D    H  N           +  + +L+ A T    + V    L SR   + V ++   
Sbjct: 112 VDEV--HRWNKSQQDALLPWVEKGTIILIGATTENPYFEVNKA-LVSR---SRVFQLLGL 165

Query: 174 DDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            ++ L +++ +   D+       Q+  +     ++V+        A  L++ +
Sbjct: 166 TEENLRQIVTQTLQDKQRGYGKWQVEFEPDALDHLVRVAS---GDARSLLNAL 215


>gi|68476913|ref|XP_717434.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
           albicans SC5314]
 gi|68477104|ref|XP_717345.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
           albicans SC5314]
 gi|46439054|gb|EAK98376.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
           albicans SC5314]
 gi|46439147|gb|EAK98468.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
           albicans SC5314]
          Length = 428

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A ++    I     ++ E
Sbjct: 205 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 256


>gi|327308590|ref|XP_003238986.1| vacuolar sorting ATPase Vps4 [Trichophyton rubrum CBS 118892]
 gi|326459242|gb|EGD84695.1| vacuolar sorting ATPase Vps4 [Trichophyton rubrum CBS 118892]
          Length = 434

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + +++ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIVF 229


>gi|323450113|gb|EGB05996.1| hypothetical protein AURANDRAFT_4792 [Aureococcus anophagefferens]
          Length = 191

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           P + V+L GP G GK+ LA   + +S +T FS    S   + 
Sbjct: 40  PPKGVLLHGPPGCGKTLLAKALARESNATFFSASGSSFVEVY 81


>gi|316979457|gb|EFV62250.1| 26S protease regulatory subunit 6A [Trichinella spiralis]
          Length = 459

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 70/183 (38%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           PS+ V+L GP G+GK+ +A   + +++ST        L  + I     ++          
Sbjct: 239 PSKGVLLYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 298

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151
                 ++++D +           +      +  ++N +   Q  + + ++ A       
Sbjct: 299 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPQADIKVIAATNRVDIL 358

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     +++ LP+D    +++      R++ IDK +    + R      
Sbjct: 359 DPAL--LRSGRLD--RKIELPLPNDLARSRIMQ--IHSRKMNIDKSVNYDELARCTDDFN 412

Query: 211 FAE 213
            A+
Sbjct: 413 GAQ 415


>gi|302652354|ref|XP_003018029.1| mitochondrial chaperone ATPase (Bcs1), putative [Trichophyton
           verrucosum HKI 0517]
 gi|291181630|gb|EFE37384.1| mitochondrial chaperone ATPase (Bcs1), putative [Trichophyton
           verrucosum HKI 0517]
          Length = 602

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 25/115 (21%)

Query: 63  PSRVVILV-GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVL 112
           P R   L  GP G GK+ L    +       +     S +            +  R  VL
Sbjct: 296 PYRRGYLFSGPPGCGKTSLCFAVAGLLGLKIYVANLSSPNLTEEGLASLFATLPRRCIVL 355

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           LEDID      ++L        Q  +     +   P +         SRLKA++V
Sbjct: 356 LEDIDTAGITKSRL--------QAGAP----SSISPAAQNAST---QSRLKASSV 395


>gi|239609667|gb|EEQ86654.1| ABC transporter [Ajellomyces dermatitidis ER-3]
 gi|327356187|gb|EGE85044.1| ABC transporter [Ajellomyces dermatitidis ATCC 18188]
          Length = 628

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90
          P  V++L+GPSGSGK+ L N+ + +  +
Sbjct: 60 PGEVMVLMGPSGSGKTTLLNVLAHRQSA 87


>gi|261196864|ref|XP_002624835.1| ABC transporter [Ajellomyces dermatitidis SLH14081]
 gi|239596080|gb|EEQ78661.1| ABC transporter [Ajellomyces dermatitidis SLH14081]
          Length = 628

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90
          P  V++L+GPSGSGK+ L N+ + +  +
Sbjct: 60 PGEVMVLMGPSGSGKTTLLNVLAHRQSA 87


>gi|213401803|ref|XP_002171674.1| ribosome biogenesis factor recycling AAA family ATPase
           [Schizosaccharomyces japonicus yFS275]
 gi|211999721|gb|EEB05381.1| ribosome biogenesis factor recycling AAA family ATPase
           [Schizosaccharomyces japonicus yFS275]
          Length = 807

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 36/201 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +    + ++ +  F                S + K  +    +
Sbjct: 288 PPRGILLYGPPGTGKTMILRAVAAETSAQVFTVDGPSIVGKYLGETESRLRKIFEDARAN 347

Query: 107 TRKPVLLEDIDLL------DFNDTQ------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID L      D ++ +         +++ +       ++ A   P S    
Sbjct: 348 QPSIIFVDEIDALVPKRTGDVSEAESRTVATFLTLLDGMANAGRVAVVAATNRPNSIDEA 407

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L     RL+    ++I +PD +    ++  +F +    +       +     RS  +   
Sbjct: 408 LRR-PGRLE--KEIEIGIPDKEARLDILKLLFHEVPNSLSDGDIEDLAA---RSHAYVGA 461

Query: 215 LVDKMDNLALSRGMGITRSLA 235
            +  +   A      I R +A
Sbjct: 462 DLAAVVREA--ALRAIKRVIA 480


>gi|195028710|ref|XP_001987219.1| GH20092 [Drosophila grimshawi]
 gi|193903219|gb|EDW02086.1| GH20092 [Drosophila grimshawi]
          Length = 754

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D +L+    
Sbjct: 355 VLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEVLVGQGA 397


>gi|154486836|ref|ZP_02028243.1| hypothetical protein BIFADO_00668 [Bifidobacterium adolescentis
           L2-32]
 gi|154084699|gb|EDN83744.1| hypothetical protein BIFADO_00668 [Bifidobacterium adolescentis
           L2-32]
          Length = 699

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 257 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 316

Query: 125 QL 126
            +
Sbjct: 317 AI 318


>gi|21108233|gb|AAM36872.1| ATPase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 429

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +  + +  F  I+  L  +    +  VL E           +
Sbjct: 34  MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLPDVRQ--VLAEAAQRFAGGRRTV 90

Query: 127 F-----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
                 H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 91  LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 147

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     A+R +      + +     I    +  +  A  L++    LA 
Sbjct: 148 PQDIVEALQRAL---RDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA 204

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 205 GEGGEITPQTLLQVLADRTR 224


>gi|88703702|ref|ZP_01101418.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88702416|gb|EAQ99519.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 401

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 29/190 (15%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS------LDSI 103
             A   +  + S    V+++ GP  SGKS L      + R     ++ +           
Sbjct: 14  RHAESRLKHFASG-YPVLVITGPRQSGKSTLVRHAFPEYRYVSLEDLDQREFAEVDPRGF 72

Query: 104 LIDTRKPVLLEDIDLLDFNDTQLFHIIN-SIHQYDSS--LLMTARTFPVSWGVCLPDLCS 160
           L       +L++          LF  I   + +       ++T              L  
Sbjct: 73  LNQFSGGAILDEAQRCP----TLFSYIQTRVDERQQPGEFILTGSQQFGLLSGITQSLAG 128

Query: 161 RLKAATVVKISLPDDDFLEK---------VIVKMFA----DRQIFIDKKLAAYIVQRMER 207
           R  AA +  + +  D+             ++         DR +        Y+   +ER
Sbjct: 129 R--AALLTLLPMTYDELQRAEKVGQNLDKILFDGAYPPIFDRGLEPHPWHGNYVRTYLER 186

Query: 208 SLVFAEKLVD 217
            +    K+ D
Sbjct: 187 DVRQLIKVQD 196


>gi|313238058|emb|CBY13177.1| unnamed protein product [Oikopleura dioica]
          Length = 389

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|258565449|ref|XP_002583469.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237907170|gb|EEP81571.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 953

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 682 PGLLLYGPPGTGKTLLAKAVARESGATVLE 711


>gi|269860541|ref|XP_002649991.1| 19S/PA700 proteasome regulatory particle subunit Rpt5p/S6'
           [Enterocytozoon bieneusi H348]
 gi|220066610|gb|EED44086.1| 19S/PA700 proteasome regulatory particle subunit Rpt5p/S6'
           [Enterocytozoon bieneusi H348]
          Length = 400

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V++ GP G+GK+ +A   + K+ +T        L  + I     ++ E
Sbjct: 180 PPKGVLMYGPPGTGKTLMARACAAKTNATFLKLAGPQLVQMYIGDGARMVRE 231


>gi|218191584|gb|EEC74011.1| hypothetical protein OsI_08942 [Oryza sativa Indica Group]
          Length = 951

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 43/144 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P + V+L GP G+GK+ LA   + ++ +   S    +L S                    
Sbjct: 694 PCKGVLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRL 753

Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144
            PV++  +++D L       F H     + N            +    L++ A       
Sbjct: 754 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKESQRILILGATNRPFDL 813

Query: 145 -----RTFPVSWGVCLPDLCSRLK 163
                R  P    V LPD  +R+K
Sbjct: 814 DDAVIRRLPRRIYVDLPDAQNRMK 837


>gi|157106603|ref|XP_001649399.1| 26S protease regulatory subunit S10b [Aedes aegypti]
 gi|94469214|gb|ABF18456.1| 26S proteasome regulatory complex ATPase RPT4 [Aedes aegypti]
 gi|108879818|gb|EAT44043.1| 26S protease regulatory subunit S10b [Aedes aegypti]
          Length = 393

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 222 ------MFNYARDHQ 230


>gi|15889208|ref|NP_354889.1| recombination factor protein RarA [Agrobacterium tumefaciens str.
           C58]
 gi|15157031|gb|AAK87674.1| ATPase, AAA family protein [Agrobacterium tumefaciens str. C58]
          Length = 438

 Score = 40.9 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 31/188 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111
           R+ID   S     +I  GP G+GK+ +A + S ++     + S I   +  +        
Sbjct: 47  RMID---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAA- 102

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
                  ++   T LF    H  N           +  + +L+  T              
Sbjct: 103 ---RTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTIILVGATTENPSFELNAA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215
           L SR   A V+     D+D L +++ +        + + ++  A +++  +        L
Sbjct: 157 LLSR---ARVLTFGSHDEDSLSELLKRAEEAEGKPLPLTEEARASLLRMADGDGRAVLTL 213

Query: 216 VDKMDNLA 223
            +++   A
Sbjct: 214 AEEVWRAA 221


>gi|296412774|ref|XP_002836095.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629900|emb|CAZ80252.1| unnamed protein product [Tuber melanosporum]
          Length = 648

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+ V+ L GP G GK+ LA   +++SR+   S     L S  +   +  +
Sbjct: 382 PAGVL-LWGPPGCGKTLLAKAVANESRANFISIQGPELLSKYVGESERAV 430


>gi|257387362|ref|YP_003177135.1| proteasome-activating nucleotidase [Halomicrobium mukohataei DSM
           12286]
 gi|257169669|gb|ACV47428.1| 26S proteasome subunit P45 family [Halomicrobium mukohataei DSM
           12286]
          Length = 406

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  +L    
Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAADR 243

Query: 123 DTQL 126
           +  +
Sbjct: 244 EPAV 247


>gi|242035791|ref|XP_002465290.1| hypothetical protein SORBIDRAFT_01g035620 [Sorghum bicolor]
 gi|241919144|gb|EER92288.1| hypothetical protein SORBIDRAFT_01g035620 [Sorghum bicolor]
          Length = 1110

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 45/164 (27%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
            P + ++L GP G+GK+ LA   + ++ +   +    S+ S  +   +  +          
Sbjct: 842  PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSISSKWLGEGEKFVKAVFSLASKI 901

Query: 113  ------LEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144
                  ++++D +            +  + N            + +  L++ A       
Sbjct: 902  APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERVLVLAATNRPFDL 961

Query: 145  -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181
                 R  P    V LPD  +R  + +  + K  L DD  LE +
Sbjct: 962  DEAVVRRLPRRLMVNLPDASNRRKILSVILAKEDLADDVDLEAI 1005


>gi|303320579|ref|XP_003070289.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109975|gb|EER28144.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 762

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  D  
Sbjct: 228 PPRGVLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 284



 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 537 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 582


>gi|212526932|ref|XP_002143623.1| proteasome regulatory particle subunit Rpt5, putative [Penicillium
           marneffei ATCC 18224]
 gi|210073021|gb|EEA27108.1| proteasome regulatory particle subunit Rpt5, putative [Penicillium
           marneffei ATCC 18224]
          Length = 465

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 251 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 310

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 311 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 368

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++  D  +
Sbjct: 369 RSGRLD--RKIEFPLPNEEARAQILQ--IHSRKMTTDDGV 404


>gi|209560132|ref|YP_002286604.1| recombination factor protein RarA [Streptococcus pyogenes NZ131]
 gi|209541333|gb|ACI61909.1| ATPase, AAA family [Streptococcus pyogenes NZ131]
          Length = 422

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +R               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                + +++M   T    +    P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++  I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTTTNGDLRSAYNSLD 200


>gi|195454601|ref|XP_002074317.1| GK18355 [Drosophila willistoni]
 gi|194170402|gb|EDW85303.1| GK18355 [Drosophila willistoni]
          Length = 423

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 35/152 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P R V+L GP G+GK+ +A   + ++++  FS    SL S               +    
Sbjct: 182 PPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGEGEKLVRTLFAVAAAH 241

Query: 109 KPVL--LEDIDLL----DFNDTQ---------LFHIINS-IHQYDSSLLMTARTFPVSWG 152
           +P +  ++++D L      N+ +         L H+  +   + +  L++ A   P    
Sbjct: 242 QPAIIFIDEVDSLLSKRSGNEHESSLRLKNEFLIHLDGATTSEENRILVIGATNRPQEL- 300

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
               D   R +    + I LPD D  +++IVK
Sbjct: 301 ----DEAVRRRFVRRLYIPLPDKDARKQIIVK 328


>gi|167379134|ref|XP_001735005.1| transitional endoplasmic reticulum ATPase [Entamoeba dispar SAW760]
 gi|165903136|gb|EDR28786.1| transitional endoplasmic reticulum ATPase, putative [Entamoeba
           dispar SAW760]
          Length = 781

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 40/190 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           PS+ V+  GP G GK+ LA   + + ++   S                N+    D     
Sbjct: 518 PSKGVLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQA 577

Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
               +  +++D +                    QL   ++ I +     ++ A   P   
Sbjct: 578 APCVLFFDELDSIGKARGGGVGDAGGSADRILNQLLTEMDGIGKKKQVFIIGATNRPDIL 637

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMER-S 208
              L  L   RL       I LPD      ++      R   +   +   +I +  E  S
Sbjct: 638 DPAL--LRPGRLDQLLF--IPLPDKASRVSIL--RAKLRNSPVAPDVDLDWIAEHTENFS 691

Query: 209 LVFAEKLVDK 218
                ++V +
Sbjct: 692 GADLAEIVQR 701



 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G GK+ +A   ++++                      N+ ++      +
Sbjct: 245 PPKGVLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKN 304

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + ++M A   P +    
Sbjct: 305 APALIFIDEIDSIAPKRDKAQGEVERRVVAQLLTLMDGMKSRSNVIVMAATNRPNAIDSA 364

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+    +++      +++ I   +
Sbjct: 365 LR----RFGRFDREIDIGVPDETGRLEIL--NIHTKKMKIADDV 402


>gi|146341817|ref|YP_001206865.1| CbxX/CfqX family protein [Bradyrhizobium sp. ORS278]
 gi|146194623|emb|CAL78648.1| hypothetical protein; putative cbxX/cfqX family protein (N-term)
           and peptidase (C-term) [Bradyrhizobium sp. ORS278]
          Length = 925

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 35/208 (16%)

Query: 64  SRVVILVGPSGSGKSCLANIW--------------------SDKSRSTRFSNIAKSLDSI 103
           +R ++  GP G+GK+ +A                       +D           K+LD  
Sbjct: 169 NRHMVFTGPPGAGKTEVARALGEIYRSLKVLRKGHVVEVQRADLIAGYIGQTALKTLDKC 228

Query: 104 LIDTRKPVLLEDI-----DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--- 155
                  + +++      +  DF    +  ++  +      +++ A  +P      +   
Sbjct: 229 KEALDGILFIDEAYSLAGEGKDFGHEAIATLLKFMEDNRDRIMVIAAGYPNEMRRFIAMN 288

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK----LAAYIVQRM-ERSLV 210
           P L SR      ++    +   L  ++  M   +   +       L  +I  R       
Sbjct: 289 PGLASRFN--RTIEFPAYEPKELAAILRLMATRQGAELPDDLEQSLIPWIETRWKGEGWG 346

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEV 238
            A ++   +D  + ++ + +    AA++
Sbjct: 347 NAREMRSLLDKASEAQSLRVAVDAAADI 374


>gi|22124635|ref|NP_668058.1| ribose 1,5-bisphosphokinase [Yersinia pestis KIM 10]
 gi|45440472|ref|NP_992011.1| ribose 1,5-bisphosphokinase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594861|ref|YP_069052.1| ribose 1,5-bisphosphokinase [Yersinia pseudotuberculosis IP 32953]
 gi|108808957|ref|YP_652873.1| ribose 1,5-bisphosphokinase [Yersinia pestis Antiqua]
 gi|108810788|ref|YP_646555.1| ribose 1,5-bisphosphokinase [Yersinia pestis Nepal516]
 gi|145600528|ref|YP_001164604.1| ribose 1,5-bisphosphokinase [Yersinia pestis Pestoides F]
 gi|153947281|ref|YP_001402521.1| ribose 1,5-bisphosphokinase [Yersinia pseudotuberculosis IP 31758]
 gi|153997496|ref|ZP_02022596.1| PhnN protein [Yersinia pestis CA88-4125]
 gi|162418681|ref|YP_001608317.1| ribose 1,5-bisphosphokinase [Yersinia pestis Angola]
 gi|165925806|ref|ZP_02221638.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936660|ref|ZP_02225227.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010147|ref|ZP_02231045.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166214293|ref|ZP_02240328.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399366|ref|ZP_02304890.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420639|ref|ZP_02312392.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423745|ref|ZP_02315498.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167467363|ref|ZP_02332067.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis FV-1]
 gi|186893870|ref|YP_001870982.1| ribose 1,5-bisphosphokinase [Yersinia pseudotuberculosis PB1/+]
 gi|218930478|ref|YP_002348353.1| ribose 1,5-bisphosphokinase [Yersinia pestis CO92]
 gi|229839113|ref|ZP_04459272.1| PhnN protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896601|ref|ZP_04511768.1| PhnN protein [Yersinia pestis Pestoides A]
 gi|229899677|ref|ZP_04514818.1| PhnN protein [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900988|ref|ZP_04516112.1| PhnN protein [Yersinia pestis Nepal516]
 gi|270489169|ref|ZP_06206243.1| phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming)
           PhnN [Yersinia pestis KIM D27]
 gi|294505168|ref|YP_003569230.1| PhnN protein [Yersinia pestis Z176003]
 gi|21957442|gb|AAM84309.1|AE013674_5 ATP-binding protein [Yersinia pestis KIM 10]
 gi|45435329|gb|AAS60888.1| PhnN protein [Yersinia pestis biovar Microtus str. 91001]
 gi|51588143|emb|CAH19749.1| PhnN protein [Yersinia pseudotuberculosis IP 32953]
 gi|108774436|gb|ABG16955.1| PhnN protein [Yersinia pestis Nepal516]
 gi|108780870|gb|ABG14928.1| PhnN protein [Yersinia pestis Antiqua]
 gi|115349089|emb|CAL22052.1| PhnN protein [Yersinia pestis CO92]
 gi|145212224|gb|ABP41631.1| PhnN protein [Yersinia pestis Pestoides F]
 gi|149289133|gb|EDM39213.1| PhnN protein [Yersinia pestis CA88-4125]
 gi|152958776|gb|ABS46237.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pseudotuberculosis IP 31758]
 gi|162351496|gb|ABX85444.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis Angola]
 gi|165915309|gb|EDR33919.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922418|gb|EDR39595.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991054|gb|EDR43355.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204525|gb|EDR49005.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961445|gb|EDR57466.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051870|gb|EDR63278.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057915|gb|EDR67661.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|186696896|gb|ACC87525.1| phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming)
           PhnN [Yersinia pseudotuberculosis PB1/+]
 gi|229682327|gb|EEO78419.1| PhnN protein [Yersinia pestis Nepal516]
 gi|229687169|gb|EEO79244.1| PhnN protein [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695479|gb|EEO85526.1| PhnN protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700379|gb|EEO88411.1| PhnN protein [Yersinia pestis Pestoides A]
 gi|262363230|gb|ACY59951.1| PhnN protein [Yersinia pestis D106004]
 gi|262367161|gb|ACY63718.1| PhnN protein [Yersinia pestis D182038]
 gi|270337673|gb|EFA48450.1| phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming)
           PhnN [Yersinia pestis KIM D27]
 gi|294355627|gb|ADE65968.1| PhnN protein [Yersinia pestis Z176003]
 gi|320016669|gb|ADW00241.1| PhnN protein [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 193

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
           +R++ L+GPSG+GK CL +   + +   R                  V L   + +   +
Sbjct: 2   ARLIYLMGPSGAGKDCLLSALRNATPQNRVVAHRYITRPADAGAENHVALSKQEFIQRAE 61

Query: 124 TQLFHIINSIHQY 136
             LF +    HQ+
Sbjct: 62  QGLFALHWQAHQH 74


>gi|315633927|ref|ZP_07889216.1| replication-associated recombination protein A [Aggregatibacter
           segnis ATCC 33393]
 gi|315477177|gb|EFU67920.1| replication-associated recombination protein A [Aggregatibacter
           segnis ATCC 33393]
          Length = 446

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113
           +I  GP G+GK+ LA I + + ++   R S +   +  I     K            + +
Sbjct: 53  MIFWGPPGTGKTTLAEIIAQRIQAEVERISAVTSGIKEIREAIEKAKQNKLAGLRTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSR---ARVYILK 163

Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223
                 +E+V+ +   D        ++ +   L + + + +      A   ++ M D  A
Sbjct: 164 PLSTQEIERVLQQAIDDPENGLGKVRLDLQANLLSLLAEYVNGDARLALNCLEMMVDMAA 223

Query: 224 LSRGMGI-TRSLAAEVLKETQQ 244
            S+   I  R+L  EVL E Q 
Sbjct: 224 ESKNGKILDRTLLTEVLGERQA 245


>gi|313895524|ref|ZP_07829080.1| Holliday junction DNA helicase RuvB [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975650|gb|EFR41109.1| Holliday junction DNA helicase RuvB [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 344

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 15/183 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-Q 125
           V+L GP G GK+ LA I +++  +      A +++           L+D D+L  ++  +
Sbjct: 59  VLLYGPPGLGKTTLAGIIANEMGANFRQTSAPAIERQGDLASLLTNLQDHDVLFIDEIHR 118

Query: 126 LFH-----IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
           L H     + +++  +   +++     P +  + L DL          K        L  
Sbjct: 119 LSHHVEEILYSAMEDHAIDIII--GKGPSARSIRL-DLAPFTLVGATTKTGA-----LSA 170

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +   F   Q  ++      ++  +ER+       ++    L ++R    T  +A  +LK
Sbjct: 171 PLRDRFGI-QARLEYYTPEALLLIIERTAEILSVTIEHEGALEIARRSRGTPRVANRILK 229

Query: 241 ETQ 243
             +
Sbjct: 230 RVR 232


>gi|298708657|emb|CBJ26144.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 966

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+L GP G GK+ LA   +++S +   S     L    +   +
Sbjct: 696 VLLYGPPGCGKTLLAKAIANESGANFISVKGPELLDKYVGESE 738



 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R ++L GP G GK+ LAN  + +
Sbjct: 297 PPRGILLHGPPGCGKTLLANAIAGE 321


>gi|294784749|ref|ZP_06750037.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
 gi|294486463|gb|EFG33825.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
          Length = 1252

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 66/135 (48%), Gaps = 21/135 (15%)

Query: 64  SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLD-------SILIDTRKPVL 112
           + +VIL G +G+GK+ LA  ++    D   +  +   +K+L+        +       ++
Sbjct: 206 NNIVILNGVAGTGKTHLALHYAKNYIDSHNAKLYCISSKALEIYEDLKLFLNTSGEYILV 265

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDS----SLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           ++D + L     +L HIIN ++         +L+T R++  +    L ++ +R   + V+
Sbjct: 266 VDDANQLS---ARLEHIINYVNMQSKGFNVKILITVRSY--ALQKVLNNIQARTSYS-VI 319

Query: 169 KISLPDDDFLEKVIV 183
            I+L  DD ++K++ 
Sbjct: 320 GINLFTDDEIKKLLE 334


>gi|290987216|ref|XP_002676319.1| proteasome subunit [Naegleria gruberi]
 gi|284089920|gb|EFC43575.1| proteasome subunit [Naegleria gruberi]
          Length = 394

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +    +     +A ++    I     ++ E
Sbjct: 175 VLLYGPPGTGKTLLARAIASNIDANFLKVVASAIVDKYIGESARIIRE 222


>gi|238573831|ref|XP_002387442.1| hypothetical protein MPER_13827 [Moniliophthora perniciosa FA553]
 gi|215442768|gb|EEB88372.1| hypothetical protein MPER_13827 [Moniliophthora perniciosa FA553]
          Length = 119

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 50 EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95
           +A R++D    W  P ++  L+G SG+GK+ L ++ ++++ +   S 
Sbjct: 32 GEARRILDHVDGWVEPGKLTALMGASGAGKTTLLDVLANRASTGVISG 79


>gi|167621667|ref|YP_001672175.1| IstB ATP binding domain-containing protein [Caulobacter sp. K31]
 gi|167646216|ref|YP_001683879.1| IstB ATP-binding domain-containing protein [Caulobacter sp. K31]
 gi|167648131|ref|YP_001685794.1| IstB ATP-binding domain-containing protein [Caulobacter sp. K31]
 gi|167348646|gb|ABZ71381.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31]
 gi|167350561|gb|ABZ73296.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31]
 gi|167351790|gb|ABZ74516.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31]
          Length = 242

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 23/148 (15%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLANIWSD---K 87
            P    ++          E  VR + D       R ++LVG +G+GK+ LA   +    +
Sbjct: 65  LPVMKDLAAFSFEGSPINEGLVRSLYDGAFLANHRNIVLVGGTGTGKTHLAIAITANVVR 124

Query: 88  SRSTR-----FSNIAKSLDSILIDTRKPVL--LEDIDLLDFND-----------TQLFHI 129
           S +          + +  D         +   L  +DL+  ++            +LFH+
Sbjct: 125 SGARGRYFNTVDLVNRLEDEARRGKAGALAAQLSRLDLVVLDELGYLPFAQSGGQRLFHL 184

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPD 157
           ++ +++  +S+++T       W     D
Sbjct: 185 VSKLYER-TSVIITTNLTFAEWPTVFGD 211


>gi|55163161|emb|CAH61110.1| IstB protein [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 217

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 21/107 (19%)

Query: 65  RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK----------- 109
           R +I VG  G+GK+ LA       +      RF N+   ++ + +D              
Sbjct: 75  RNIIFVGGPGTGKTHLATALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 134

Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
              ++L+D+  L F+      LFH+I+ +H++ +S+++T       W
Sbjct: 135 LDLIVLDDLGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 180


>gi|19553890|ref|NP_601892.1| cell division protein [Corynebacterium glutamicum ATCC 13032]
 gi|62391533|ref|YP_226935.1| cell-division protein (ATP-dependent Zn metallopeptidase)
           [Corynebacterium glutamicum ATCC 13032]
 gi|75368391|sp|Q6M2F0|FTSH_CORGL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|41326875|emb|CAF20719.1| CELL-DIVISION PROTEIN (ATP-DEPENDENT ZN METALLOPEPTIDASE)
           [Corynebacterium glutamicum ATCC 13032]
          Length = 853

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 49/206 (23%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 199 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSP 258

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFP----- 148
             + +++ID +            D  +  L  +   ++        +LM A   P     
Sbjct: 259 CIIFVDEIDAVGRARGSGMGGGHDEREQTLNQLLVEMDGFGDRQGVILMAATNRPDVLDP 318

Query: 149 ---------VSWGVCLPDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197
                        V  PDL  R +   V     P   D  ++ +  +        +   L
Sbjct: 319 ALLRPGRFDRQIPVTNPDLRGREQILEVHAKGKPFAPDADIKALAKRTAGMSGADLANVL 378

Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221
             AA +  R+  +++ A+ L +  D 
Sbjct: 379 NEAALLTARVGGNVITADALEEATDR 404


>gi|88856265|ref|ZP_01130925.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
 gi|88814584|gb|EAR24446.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1]
          Length = 343

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 73/199 (36%), Gaps = 30/199 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           ++L GP G GK+ LA I + +        S          +     +   + + +++I  
Sbjct: 60  ILLAGPPGLGKTTLAMIVAHESNRPLRMSSGPAIQHAGDLAAVLSSLLPGEVLFIDEIHR 119

Query: 119 LDFNDTQLFHI------INSIHQYDS-----SL------LMTARTFPVSWGVCLPDLCSR 161
           +  +  ++ ++      I+ +    +      L      L+ A T        L D    
Sbjct: 120 MARSAEEMLYLAMEDFRIDIMVGKGAGATSIPLDIAPFTLVGATTRSGLLPNPLRD---- 175

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            +      +   D+  LE+V+V+      + ID+   A I  R   +   A +L+ ++ +
Sbjct: 176 -RFGFTAHLEFYDEPELEQVLVRAAVMLDLDIDRTAIAEIAGRCRGTPRIANRLLRRVRD 234

Query: 222 LALSRGMGITRSLAAEVLK 240
            AL   +  +R      L+
Sbjct: 235 YALVNHIPASRDAVRAALE 253


>gi|332795777|ref|YP_004457277.1| AAA ATPase central domain-containing protein [Acidianus hospitalis
           W1]
 gi|332693512|gb|AEE92979.1| AAA ATPase central domain protein [Acidianus hospitalis W1]
          Length = 540

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 79/191 (41%), Gaps = 34/191 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + ++L GP G+GK+ +A   +++ +++      + + S  I   + +           
Sbjct: 315 PVKGILLYGPPGTGKTSIAKAMANELKASFIILSGEEIASAQIRAPEVIAEKFNIARDNS 374

Query: 113 -----LEDIDLLDFND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                +++ID++  N          T+L   I+ I + D  +L+ A   P  W +    L
Sbjct: 375 PAVIFIDEIDMIAKNRMFNEWRNALTELLTQIDGIRETDDIILVGATNRP--WDLDPAIL 432

Query: 159 C-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL--VFAEKL 215
              R+    +V +  PD +   KV+  +   + + +D+K     V ++  +      + +
Sbjct: 433 RPGRID--KLVYVPPPDYEGRIKVLKVLT--KGLEVDEKTIE-EVAKITENYTPADLKLV 487

Query: 216 VDKMDNLALSR 226
           VD++    L  
Sbjct: 488 VDEIRRNLLKE 498


>gi|308181125|ref|YP_003925253.1| recombination factor protein RarA [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046616|gb|ADN99159.1| recombination factor protein RarA [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 426

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 20/133 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++    D
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYISIN-PAIRSR---TQIFQVFPLTD 152

Query: 176 DFLEKVIVKMFAD 188
           D ++  + +  AD
Sbjct: 153 DDIQHAVERALAD 165


>gi|307130789|ref|YP_003882805.1| recombination protein [Dickeya dadantii 3937]
 gi|306528318|gb|ADM98248.1| recombination protein [Dickeya dadantii 3937]
          Length = 447

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 68/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA +     ++   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAELIGRYGQADVERISAVTSGIKEIREAIERA----RQNRDAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRM----ERSLVFAEKLVDKM 219
                D +E+V+ +   D+       QI +       + + +     RSL   E + D  
Sbjct: 163 KALSADDIEQVLDQALQDKERGLGGQQIVLPDDTRRLLAELVNGDARRSLNLLEMMADMA 222

Query: 220 DNLALSRGMGITRSLAAEV 238
           +  A S    +T +L  EV
Sbjct: 223 EVDA-SGQRVLTSALLKEV 240


>gi|290973039|ref|XP_002669257.1| predicted protein [Naegleria gruberi]
 gi|284082802|gb|EFC36513.1| predicted protein [Naegleria gruberi]
          Length = 443

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + ++ ST FS  A  L
Sbjct: 167 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSASDL 204


>gi|257888138|ref|ZP_05667791.1| AAA ATPase [Enterococcus faecium 1,141,733]
 gi|257824192|gb|EEV51124.1| AAA ATPase [Enterococcus faecium 1,141,733]
          Length = 428

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 24/172 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAY---IVQRMERSLV-FAEKLVDKMDNLA 223
             ++  +     D++  + ++        +  + R+        ++ ++  A
Sbjct: 153 QDIQLAVKHALKDKERGLGQQAIQLDEEALLHLSRATNGDLRSALNGLELAA 204


>gi|257464779|ref|ZP_05629150.1| recombination factor protein RarA [Actinobacillus minor 202]
 gi|257450439|gb|EEV24482.1| recombination factor protein RarA [Actinobacillus minor 202]
          Length = 426

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 35/200 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 34  MIFWGPPGTGKTTLAEIIAYHFDADVERLSAVTSGIKEIREAIERA----KLNRQTGRRT 89

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A V  +
Sbjct: 90  LLFVDEVHRFNKSQQDAFLPYIEDGTIIFIGATTENPSFELNNA---LLSR---ARVYIL 143

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  +  V+     D  R +      +   +   +   +     +A   +++M ++A
Sbjct: 144 KPLQSADILLVLQNALNDKTRGLGAEKIVLKDNVLNLLADYVNGDARYALNCLEQMSDMA 203

Query: 224 LS--RGMGITRSLAAEVLKE 241
                G     +L  E+L E
Sbjct: 204 TQTEAGKLFDLNLLTEILGE 223


>gi|227488176|ref|ZP_03918492.1| IstB domain protein ATP-binding protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091865|gb|EEI27177.1| IstB domain protein ATP-binding protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 252

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 30/150 (20%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------- 104
           +W   P+ + IL  P+G+GK+ +       +    +S     LD ++             
Sbjct: 98  NWRENPTNIHILA-PTGTGKTYIVCAIGVAACQAGYSVAYYRLDQLVDMLAVFSPTDQNY 156

Query: 105 ------IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLP 156
                 +     ++++D   +  N      +   I   D  L  L+++++    W   LP
Sbjct: 157 LDKMRKLINVDVLIIDDFMTMSINQRGQEDLSKIIFDRDGRLPTLISSQSAAAYWVEELP 216

Query: 157 D------LCSRLKAATVVKISLPDDDFLEK 180
           D      L SRL     ++I   D D  + 
Sbjct: 217 DRVGADSLVSRLNNGHRIRIG--DFDMRKA 244


>gi|225025939|ref|ZP_03715131.1| hypothetical protein EUBHAL_00175 [Eubacterium hallii DSM 3353]
 gi|224956725|gb|EEG37934.1| hypothetical protein EUBHAL_00175 [Eubacterium hallii DSM 3353]
          Length = 334

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 45/186 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++  S        +++           L D D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLAGIIANEMDSNLKITSGPAIEKPGEIAAVLNGLSDGDVLFIDEI-- 112

Query: 127 FHIINSIHQYDSS---------LLMTARTFPVSWGVCLPD----------------LCSR 161
            H +N   +             +++       S  + LP                 L  R
Sbjct: 113 -HRLNRQVEEVLYPAMEDFSIDIMIGKGASAKSIRLELPHFTLVGATTRAGMLTAPLRDR 171

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFID--------------KKLAAYIVQRMER 207
                V ++    D+ L+ ++ +      + ID               +LA  +++R+ R
Sbjct: 172 F--GVVNRLEFYTDEELKVIVERSAELLGVKIDEAGAMEVGKRSRGTPRLANRLLKRV-R 228

Query: 208 SLVFAE 213
                 
Sbjct: 229 DFAQVR 234


>gi|207092026|ref|ZP_03239813.1| recombination factor protein RarA [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 367

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +   +     F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + + +L++ A T   ++ +    + SR   + + +++   
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKNHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLK 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K  A  +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCAKALALLKKQIEPGAKTYLLNN---SAGDARALLNLLDLSA-----KIENPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|196012762|ref|XP_002116243.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens]
 gi|190581198|gb|EDV21276.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens]
          Length = 478

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 47/129 (36%), Gaps = 28/129 (21%)

Query: 67  VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-D 123
           +I  GP G GK+ LANI +   KS++        +  S     R+ + +   D   FN  
Sbjct: 81  MIFWGPPGCGKTTLANIIAKSGKSKANMRFIQLSATSSGTQKVREVIDIAQKDRTMFNRQ 140

Query: 124 TQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSR-------- 161
           T LF    H  N           +  + +L+  T      S       L SR        
Sbjct: 141 TILFMDEIHRFNKAQQDVFLPYVENGTIVLIGATTENPSFSLNNA---LLSRCHVITLQK 197

Query: 162 LKAATVVKI 170
           L +A VV I
Sbjct: 198 LSSANVVTI 206


>gi|297619884|ref|YP_003707989.1| 26S proteasome subunit P45 family [Methanococcus voltae A3]
 gi|297378861|gb|ADI37016.1| 26S proteasome subunit P45 family [Methanococcus voltae A3]
          Length = 405

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ LA   + ++ ++    +   L    I     ++ +
Sbjct: 179 PPKGILLYGPPGTGKTLLAKAVAYETNASFIRVVGSELVKKFIGEGAKLVRD 230


>gi|55379751|ref|YP_137601.1| proteasome-activating nucleotidase [Haloarcula marismortui ATCC
           43049]
 gi|55232476|gb|AAV47895.1| proteasome-activating nucleotidase 1 [Haloarcula marismortui ATCC
           43049]
          Length = 406

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  +L    
Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAAER 243

Query: 123 DTQL 126
           +  +
Sbjct: 244 EPAI 247


>gi|330719421|ref|ZP_08314021.1| recombination factor protein RarA [Leuconostoc fallax KCTC 3537]
          Length = 428

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  S+ + R  N A           +   +     +LL++I 
Sbjct: 43  MILYGPPGTGKTSIASAIAGSSKYAFRVLNAATDSKKDLQIVAEEAKMSGSVVLLLDEIH 102

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +  + +L+ A T      V  P + SR     + ++    +
Sbjct: 103 RLDKTKQDFLLPHL-----ESGNIILIGATTENPYINVT-PAIRSR---TQIFQVYPLTE 153

Query: 176 DFLEKVIVKMFADR 189
           + + + I +   D+
Sbjct: 154 NDIHQAIQRTLNDK 167


>gi|284031135|ref|YP_003381066.1| ABC transporter-like protein [Kribbella flavida DSM 17836]
 gi|283810428|gb|ADB32267.1| ABC transporter related protein [Kribbella flavida DSM 17836]
          Length = 250

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 16/66 (24%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            R   ++GPSGSGKS L +  +   R                 T   VLL D+DL   ++
Sbjct: 41  GRFTAIMGPSGSGKSTLLHCLAGLDR----------------PTSGQVLLGDVDLTRLDE 84

Query: 124 TQLFHI 129
             L H+
Sbjct: 85  KALTHL 90


>gi|241247311|ref|XP_002402795.1| ATPase, putative [Ixodes scapularis]
 gi|215496401|gb|EEC06041.1| ATPase, putative [Ixodes scapularis]
          Length = 280

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + VIL GP G+GK+ LA   ++++ +T    +   L
Sbjct: 194 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 231


>gi|213404020|ref|XP_002172782.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
 gi|212000829|gb|EEB06489.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
          Length = 718

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 470 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKFLGESEKLV 519


>gi|119960933|ref|YP_947567.1| ATPase, AFG1 family protein [Arthrobacter aurescens TC1]
 gi|119947792|gb|ABM06703.1| putative ATPase, AFG1 family protein [Arthrobacter aurescens TC1]
          Length = 383

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA++W               +     ++       + + K V +++
Sbjct: 121 IYLDGGFGVGKTHLLASLWHRSPGPKAFGTFVEYTNLVGALSFRKTVEALSSYKLVCIDE 180

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
            +L D  DT L   ++  +      L  T+ T P S G
Sbjct: 181 FELDDPGDTVLMSRLMRELADAGVKLAATSNTLPGSLG 218


>gi|29825445|gb|AAO92283.1| 26S proteasome regulatory subunit [Dermacentor variabilis]
          Length = 402

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 179 PPKGCLLYGPPGTGKTLLARAVASQIEANFLKVVSSAIVDKYIGESARLIRE-------- 230

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 231 ------MFNYARDHQ 239


>gi|119025427|ref|YP_909272.1| hypothetical protein BAD_0409 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765011|dbj|BAF39190.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 699

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S        + +      + +  D    N  
Sbjct: 257 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 316

Query: 125 QL 126
            +
Sbjct: 317 AI 318


>gi|330981392|gb|EGH79495.1| recombination factor protein RarA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 440

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +   +  A       I     V  +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLAKLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      RQ+ +     A ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRQLALSDGGFAMLMSAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDVGLLQSLLGDSRR 239


>gi|301095171|ref|XP_002896687.1| vacuolar protein sorting-associating protein, putative
           [Phytophthora infestans T30-4]
 gi|262108826|gb|EEY66878.1| vacuolar protein sorting-associating protein, putative
           [Phytophthora infestans T30-4]
          Length = 460

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P + ++L GP G+GKS LA   + ++ +T F
Sbjct: 156 PWKGILLYGPPGTGKSYLAQAVATEADATFF 186


>gi|253577518|ref|ZP_04854831.1| vesicle-fusing ATPase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843058|gb|EES71093.1| vesicle-fusing ATPase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 500

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           P + ++L GP G+GK+ LA   +  + +   +        + +     
Sbjct: 103 PIKGILLTGPPGTGKTLLAKAAAHYTNAVFVAASGSEFVEMYVGVGAS 150


>gi|221108420|ref|XP_002169816.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 284

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P R ++L GP G+GK+ +A   ++++ +  F
Sbjct: 233 PPRGILLYGPPGTGKTLMARAVANETGAFFF 263


>gi|207725073|ref|YP_002255470.1| transposase and helper proteins (partial sequence) [Ralstonia
           solanacearum MolK2]
 gi|206590303|emb|CAQ37264.1| putative transposase and helper proteins (partial sequence)
           [Ralstonia solanacearum MolK2]
          Length = 653

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 484 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 538

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 539 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 596

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 597 FTQWATAFAD 606


>gi|33861411|ref|NP_892972.1| cell division protein FtsH4 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633988|emb|CAE19313.1| cell division protein FtsH4 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 584

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 55/216 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GP G+GK+ LA   + +S     S  A     + +                     
Sbjct: 171 VLLIGPPGTGKTLLAKAIAGESGVPFLSIAASEFVELFVGVGASRVRDLFEKAKEKSPCI 230

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +           ND       QL   ++        +++ A   P       
Sbjct: 231 IFIDEIDSIGRQRGSGIGGGNDEREQTLNQLLTELDGFADNSGIIVIAATNRPDILDSAL 290

Query: 152 ----------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID-KKLAAY 200
                      V LPDL  R K  +V  +S P     + V +  +A R +      LA  
Sbjct: 291 LRPGRFDRKIEVMLPDLDGRKKILSVHSLSKP---LAKDVDLSYWATRTVGFSGADLANL 347

Query: 201 I---VQRMERSLVFAE---KLVDKMDNLALSRGMGI 230
           +        R          + + +D + L     I
Sbjct: 348 MNESAIHCAREDSKLITYSHIENALDKVTLGLRTSI 383


>gi|254495330|ref|ZP_05108254.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Polaribacter sp. MED152]
 gi|85819684|gb|EAQ40841.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Polaribacter sp. MED152]
          Length = 423

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 24/139 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +IL GP G GK+ LANI + +S                       AK    +      
Sbjct: 40  PSLILWGPPGIGKTTLANIIATESNRPFYTLSAISSGVKDVREVIEKAKKSGGLFTAKNP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L        +     L+ A T   S+ V +P L SR     V 
Sbjct: 100 ILFIDEIHRFSKSQQDSLL----GAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151

Query: 169 KISLPDDDFLEKVIVKMFA 187
            ++  D + L  ++ +   
Sbjct: 152 ILNSFDKNDLIALLERAIQ 170


>gi|328850881|gb|EGG00041.1| AAA ATPase [Melampsora larici-populina 98AG31]
          Length = 745

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           ++L GP G GK+ LA   +++S++   S     L
Sbjct: 479 ILLWGPPGCGKTLLAKAVANESQANFISVKGPEL 512



 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R ++L GP G GK+ LA+  S++   T  +  + S+ S +    +  + +  D     
Sbjct: 138 PIRGLLLCGPPGCGKTMLASAISNQLGITLINVSSTSIVSGMSGESEKAIRDIFDQATKQ 197

Query: 123 DTQLF 127
              L 
Sbjct: 198 APCLL 202


>gi|326474867|gb|EGD98876.1| vacuolar sorting ATPase [Trichophyton tonsurans CBS 112818]
          Length = 434

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + +++ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIVF 229


>gi|310795052|gb|EFQ30513.1| ATPase [Glomerella graminicola M1.001]
          Length = 809

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +SRST FS  A SL S  +   + ++
Sbjct: 553 PARGMLLFGPPGTGKTMLARAVATESRSTFFSISASSLTSKYLGESEKLV 602


>gi|303314983|ref|XP_003067499.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240107169|gb|EER25354.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 958

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 687 PGLLLYGPPGTGKTLLAKAVARESGATVLE 716


>gi|197127956|gb|ACH44454.1| putative 26S ATPase complex subunit 4 [Taeniopygia guttata]
          Length = 440

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFXRVVGSELIQKYLGDGPKLVRE 269


>gi|221052024|ref|XP_002257588.1| cell division cycle ATPase [Plasmodium knowlesi strain H]
 gi|193807418|emb|CAQ37924.1| cell division cycle ATPase, putative [Plasmodium knowlesi strain H]
          Length = 1132

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 43/141 (30%)

Query: 64   SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107
            ++ ++L GP G GK+ LA   +++  +   S                N+    D     +
Sbjct: 877  NKGILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAAS 936

Query: 108  RKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152
               +  ++ID L                  Q+   I+ I++  +  ++ A   P      
Sbjct: 937  PCIIFFDEIDSLAKERNSNNNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 996

Query: 153  ------------VCLPDLCSR 161
                        + LPD  SR
Sbjct: 997  LTRPGRLDKLIYISLPDYKSR 1017


>gi|156094884|ref|XP_001613478.1| cell division cycle ATPase [Plasmodium vivax SaI-1]
 gi|148802352|gb|EDL43751.1| cell division cycle ATPase, putative [Plasmodium vivax]
          Length = 1089

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 43/141 (30%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107
           ++ ++L GP G GK+ LA   +++  +   S                N+    D     +
Sbjct: 830 NKGILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAAS 889

Query: 108 RKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152
              +  ++ID L                  Q+   I+ I++  +  ++ A   P      
Sbjct: 890 PCIIFFDEIDSLAKERNSNNNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 949

Query: 153 ------------VCLPDLCSR 161
                       + LPD  SR
Sbjct: 950 LTRPGRLDKLIYISLPDYKSR 970


>gi|50308283|ref|XP_454142.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643277|emb|CAG99229.1| KLLA0E04379p [Kluyveromyces lactis]
          Length = 729

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 479 PVRGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 528


>gi|56551054|ref|YP_161893.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761368|ref|ZP_04759456.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753283|ref|YP_003226176.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|81820941|sp|Q5NR72|RUVB_ZYMMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56542628|gb|AAV88782.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374275|gb|EER63772.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552646|gb|ACV75592.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 347

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 76/202 (37%), Gaps = 29/202 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+  GP G GK+ LA I + +      +T    I KS D   + T     LED D+L  +
Sbjct: 55  VLFFGPPGLGKTTLAQIIAREMGVGFRATSGPVIVKSGDLAALLTN----LEDGDVLFID 110

Query: 123 DTQLFH------IINSIHQYDSSLLMTARTFPVSWGVCLPD-----------LCS---RL 162
           +           +  ++      L++       S  + LP            L S   R 
Sbjct: 111 EIHRLQPVVEEVLYPAMEDRALDLMIGEGPSARSVRIDLPHFTLVGATTRQGLLSTPLRD 170

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +    V++     + L +VI +      + I  + A  I +R   +   A +L+ ++ + 
Sbjct: 171 RFGIPVRLQFYSIEELRQVITRAARLLGMEIAPEGAEEIAKRSRGTPRIAGRLLRRVRDF 230

Query: 223 ALSRGMGI-TRSLAAEVLKETQ 243
           A   G  I  R +A E L   +
Sbjct: 231 ADVAGSKIVDRFIADEALNRLE 252


>gi|332673268|gb|AEE70085.1| ATPase [Helicobacter pylori 83]
          Length = 391

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +   +     F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I      Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCAKALTLLKKQIKPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|325983583|ref|YP_004295985.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325533102|gb|ADZ27823.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
          Length = 455

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLA--------NIWSDKSRSTRFSNIAKSLD-----------SILIDT 107
           ++LVG +G+GK+ LA           + K R     ++A SL+           ++ +  
Sbjct: 288 LVLVGGTGTGKTHLAIAIGTSGIQHHNKKVRFFSAIDLANSLEQEKSTGKQGRLALRLLQ 347

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
              V+L+++  L F+      LFH+++ +++  +S+++T       W 
Sbjct: 348 IDLVILDELGYLPFSQAGGALLFHLLSRLYER-TSVIITTNLAFAEWS 394


>gi|320528953|ref|ZP_08030045.1| Holliday junction DNA helicase RuvB [Selenomonas artemidis F0399]
 gi|320138583|gb|EFW30473.1| Holliday junction DNA helicase RuvB [Selenomonas artemidis F0399]
          Length = 344

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 15/183 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-Q 125
           V+L GP G GK+ LA I +++  +      A +++           L+D D+L  ++  +
Sbjct: 59  VLLYGPPGLGKTTLAGIIANEMGANFRQTSAPAIERQGDLASLLTNLQDHDVLFIDEIHR 118

Query: 126 LFH-----IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
           L H     + +++  +   +++     P +  + L DL          K        L  
Sbjct: 119 LSHHVEEILYSAMEDHAIDIII--GKGPSARSIRL-DLAPFTLVGATTKTGA-----LSA 170

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +   F   Q  ++      ++  +ER+       ++    L ++R    T  +A  +LK
Sbjct: 171 PLRDRFGI-QTRLEYYTPEALLLIIERTAEILSVTIEHEGALEIARRSRGTPRVANRILK 229

Query: 241 ETQ 243
             +
Sbjct: 230 RVR 232


>gi|257896971|ref|ZP_05676624.1| AAA ATPase [Enterococcus faecium Com12]
 gi|293378673|ref|ZP_06624832.1| recombination factor protein RarA [Enterococcus faecium PC4.1]
 gi|257833536|gb|EEV59957.1| AAA ATPase [Enterococcus faecium Com12]
 gi|292642713|gb|EFF60864.1| recombination factor protein RarA [Enterococcus faecium PC4.1]
          Length = 428

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 24/172 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAY---IVQRMERSLV-FAEKLVDKMDNLA 223
             ++  +     D++  + ++        +  + R+        ++ ++  A
Sbjct: 153 QDIQLAVKHALKDKERGLGQQAIQLDEEALLHLSRATNGDLRSALNGLELAA 204


>gi|238879861|gb|EEQ43499.1| 26S protease subunit RPT4 [Candida albicans WO-1]
          Length = 428

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A ++    I     ++ E
Sbjct: 205 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 256


>gi|296005359|ref|XP_001349843.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
           falciparum 3D7]
 gi|225631944|emb|CAD52250.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
           falciparum 3D7]
          Length = 420

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 195 PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMAKSK 254

Query: 113 ------LEDIDLLD---FNDTQ---------LFHIINSI----HQYDSSLLMTARTF--- 147
                 ++++D +     +++          +  I+N +    ++ +  +LM        
Sbjct: 255 KACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTL 314

Query: 148 ------P----VSWGVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 315 DSALVRPGRIDRRIEFSLPDLEGR 338


>gi|222099902|ref|YP_002534470.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermotoga
           neapolitana DSM 4359]
 gi|221572292|gb|ACM23104.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermotoga
           neapolitana DSM 4359]
          Length = 358

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA+I + + ++         L            LE  D+L  ++   
Sbjct: 78  ILLAGPPGLGKTTLAHIIASEMQTNIHITSGPVLAKQGDMAAILTSLERGDVLFIDEI-- 135

Query: 127 FHIINSIHQYDSSLLMTA 144
            H +N   +    +L +A
Sbjct: 136 -HRLNKAVEE---VLYSA 149


>gi|170728960|ref|YP_001762986.1| ATPase central domain-containing protein [Shewanella woodyi ATCC
           51908]
 gi|169814307|gb|ACA88891.1| AAA ATPase central domain protein [Shewanella woodyi ATCC 51908]
          Length = 446

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 70/215 (32%), Gaps = 46/215 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           ++L GP G GK+ LA   + +  +T  + +   +  + I   +                 
Sbjct: 203 ILLFGPPGCGKTLLARATAGECNATFINVVISDILDMYIGESEKKLHAIFEQARQNTPSV 262

Query: 111 VLLEDIDLLDFNDTQ-------------LFHIINSIHQYDSSLLMTARTFPVSWG--VCL 155
           +  ++I+ L                   L  +          L++ A   P +       
Sbjct: 263 IFFDEIESLAAKRQHTREATSAKLVSQFLSELDGFAQNNHGVLILGATNVPWALDPAFRR 322

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR--QIFIDKKLAAYIVQRMERSLVFAE 213
           P    R     VV I+ PD D    ++  +  DR     +D +  A +      S     
Sbjct: 323 P---GRFD--RVVFIAPPDVDARTDILKGLLKDRPGGESVDAQKIARLTSGF--SGADLM 375

Query: 214 KLVD-KMDNL---ALSRGM--GITRSLAAEVLKET 242
            LV+  +D     ++  G    + ++   E LKE 
Sbjct: 376 NLVETAVDEAIDHSIESGEEVPLNQTFVKEALKEV 410


>gi|94309429|ref|YP_582639.1| IstB-like ATP-binding protein [Cupriavidus metallidurans CH34]
 gi|94312295|ref|YP_585505.1| IstB-like ATP-binding protein [Cupriavidus metallidurans CH34]
 gi|93353281|gb|ABF07370.1| IstB-like ATP binding protein ISRme4 [Cupriavidus metallidurans
           CH34]
 gi|93356147|gb|ABF10236.1| IstB-like ATP binding protein ISRme4 [Cupriavidus metallidurans
           CH34]
          Length = 261

 Score = 40.9 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 24/144 (16%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA-----NIWS 85
           FP    ++  D     A E  VR +        +  V+LVG  G+GK+ L          
Sbjct: 65  FPAYRDLTGFDFSCSEANEALVRQLHRCEFLESAHNVVLVGGPGTGKTHLGTAIGVQAVE 124

Query: 86  DKSRSTRFSNIAKSLDSILIDT--------------RKPVLLEDIDLLDFND---TQLFH 128
              R  RF +  + ++++ ++                  V+L+++  L F+      LFH
Sbjct: 125 HHHRRVRFFSTVELVNALELEKVSGKPGHLATRLMYADLVILDELGYLPFSQVGGALLFH 184

Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152
           +I+ +++  +SL++T       W 
Sbjct: 185 LISKLYER-TSLIITTNLSFGEWS 207


>gi|331085433|ref|ZP_08334518.1| hypothetical protein HMPREF0987_00821 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407671|gb|EGG87169.1| hypothetical protein HMPREF0987_00821 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 280

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 18/104 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDK----------SRSTRFSNIAKSLDSI-----LIDTRKPV 111
            +L GP G+GKS +A   ++           +      +    L+        +   + +
Sbjct: 113 FLLWGPIGTGKSYIAGCIANALLNQEITVKMTNFNTIIDDMFPLEDKTEYINALAKYELL 172

Query: 112 LLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWG 152
           +L+D+     ++  L   F II+  ++    L++T         
Sbjct: 173 ILDDLGTERSSEYALGIVFSIIDRRYRSGRPLIVTTNLPIKQLK 216


>gi|325983580|ref|YP_004295982.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325533099|gb|ADZ27820.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
          Length = 458

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLA--------NIWSDKSRSTRFSNIAKSLD-----------SILIDT 107
           ++LVG +G+GK+ LA           + K R     ++A SL+           ++ +  
Sbjct: 291 LVLVGGTGTGKTHLAIAIGTSGIQHHNKKVRFFSAIDLANSLEQEKSTGKQGRLALRLLQ 350

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
              V+L+++  L F+      LFH+++ +++  +S+++T       W 
Sbjct: 351 IDLVILDELGYLPFSQAGGALLFHLLSRLYER-TSVIITTNLAFAEWS 397


>gi|322488417|emb|CBZ23663.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 4873

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 50   EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
              A  L++ + SW    R V+LVGP  SGK+ L   W+        S    S       +
Sbjct: 1637 AAADALLERFTSWMNVHRRVLLVGPPFSGKTRLWRTWAGSQLPLIVSMSLISAADFYGTS 1696

Query: 108  RKP 110
              P
Sbjct: 1697 TDP 1699


>gi|288800898|ref|ZP_06406355.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332359|gb|EFC70840.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039]
          Length = 425

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 40/203 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
              IL GP G GK+ LA I S        + S   S + +  + I   T++     +  +
Sbjct: 41  PSFILWGPPGVGKTTLATIISHTIDVPFYTLSAVTSGVKEVREVIDKATKERFFSNNAPI 100

Query: 119 LDFNDTQLFHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           L  ++    H  +           +     L+ A T   S+ V  P L SR        +
Sbjct: 101 LFIDEI---HRFSKSQQDSLLGAVEKGVVTLIGATTENPSFEVIRP-LLSR---CQTYIL 153

Query: 171 SLPDDDFLEKVIVKM------FADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKM--- 219
                + LE ++ +          R I +     L  +       S   A KL++ +   
Sbjct: 154 QPLSKNDLEALLQRAITEDVELQQRNIELRETDALLHF-------SGGDARKLLNILELV 206

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D       + IT     + L++
Sbjct: 207 VDAFVGDEKVIITNDFVKQCLQQ 229


>gi|170034396|ref|XP_001845060.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus]
 gi|167875693|gb|EDS39076.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus]
          Length = 393

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 222 ------MFNYARDHQ 230


>gi|146175214|ref|XP_001470868.1| metalloprotease m41 ftsh [Tetrahymena thermophila]
 gi|146144688|gb|EDK31554.1| metalloprotease m41 ftsh [Tetrahymena thermophila SB210]
          Length = 708

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   + ++  + F       D + +      + E
Sbjct: 313 ILLVGPPGTGKTLLARALAGEAGCSFFYKSGSEFDEMFVGVGASRVRE 360


>gi|162605898|ref|XP_001713464.1| cell division cycle protein 48 homolog [Guillardia theta]
 gi|13794396|gb|AAK39773.1|AF083031_130 cell division cycle protein 48 homolog [Guillardia theta]
          Length = 752

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GPSG GK+ +A   ++++ +  +                SN+ K+ D    +
Sbjct: 216 PPRGVLMYGPSGCGKTLIAKAVANETGAFLYSINGPEIMSKLAGESESNLKKAFDEAEKN 275

Query: 107 TRKPVLLEDIDLLD 120
           +   + +++ID + 
Sbjct: 276 SPSIIFIDEIDSIA 289



 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS+ V+  GP G GK+ LA   +++ ++   S
Sbjct: 489 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 520


>gi|321478112|gb|EFX89070.1| hypothetical protein DAPPUDRAFT_233773 [Daphnia pulex]
          Length = 285

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 23/133 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V++ GP G GK+ LA   +  + +     +        +     +   D D+    
Sbjct: 120 PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMTGADRDV---- 175

Query: 123 DTQLFHIINSI----HQYDSSLLMTARTF----PVSW---------GVCLPDLCS-RLK- 163
              L  ++N +       +  ++M         P               LPD    RL  
Sbjct: 176 QRILLELLNQMDGFEQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 235

Query: 164 AATVVKISLPDDD 176
           A    K+++ D++
Sbjct: 236 ATITAKMNVSDEE 248


>gi|312373685|gb|EFR21384.1| hypothetical protein AND_17121 [Anopheles darlingi]
          Length = 392

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 220

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 221 ------MFNYARDHQ 229


>gi|296242724|ref|YP_003650211.1| CDC48 subfamily AAA family ATPase [Thermosphaera aggregans DSM
           11486]
 gi|296095308|gb|ADG91259.1| AAA family ATPase, CDC48 subfamily [Thermosphaera aggregans DSM
           11486]
          Length = 740

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G GK+ LA   + +S +   +     +
Sbjct: 498 PPKGILLYGPPGCGKTLLAKAVATESGANFIAVRGAEI 535



 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P + ++L GP G+GK+ LA   ++++ +   
Sbjct: 219 PPKGILLYGPPGTGKTLLAKALANEANAYFI 249


>gi|257051455|ref|YP_003129288.1| proteasome-activating nucleotidase [Halorhabdus utahensis DSM
           12940]
 gi|256690218|gb|ACV10555.1| 26S proteasome subunit P45 family [Halorhabdus utahensis DSM 12940]
          Length = 403

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  +L   +
Sbjct: 181 PPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFELARQH 240

Query: 123 DTQLF 127
           +  + 
Sbjct: 241 EPSVL 245


>gi|255935363|ref|XP_002558708.1| Pc13g02690 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583328|emb|CAP91338.1| Pc13g02690 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 462

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 248 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 307

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 365

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++    ++      R++ ++  +
Sbjct: 366 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMSVEDSV 401


>gi|147920787|ref|YP_685407.1| cell division cycle protein 48 [uncultured methanogenic archaeon
           RC-I]
 gi|110620803|emb|CAJ36081.1| cell division cycle protein 48 [uncultured methanogenic archaeon
           RC-I]
          Length = 743

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 496 PPKGIVLYGPPGTGKTLLARAVAGESEANFIN 527



 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   +++  +  +S
Sbjct: 225 PPKGVLLHGPPGTGKTLLAKAVANECGAEFYS 256


>gi|94991276|ref|YP_599376.1| recombination factor protein RarA [Streptococcus pyogenes
           MGAS10270]
 gi|94544784|gb|ABF34832.1| ATPase, AAA family [Streptococcus pyogenes MGAS10270]
          Length = 422

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 24/167 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +R               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
            LD      L  ++    +  + +++ A T    + V  P + SR     + ++    ++
Sbjct: 102 RLDKIKQDFLLPLL----ENGTIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNE 153

Query: 177 FLEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
            ++  I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 154 DIKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|327329237|gb|EGE70997.1| cell division protein FtsH [Propionibacterium acnes HL103PA1]
          Length = 717

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVRGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQVAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|332715388|ref|YP_004442854.1| IS21 family transposase [Agrobacterium sp. H13-3]
 gi|325062073|gb|ADY65763.1| IS21 family transposase [Agrobacterium sp. H13-3]
          Length = 264

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 34/154 (22%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVR------LIDSWPSWPSRVVILVGPSGSGKSCLA---- 81
           FP    IS  D       E  VR       ID   +     ++LVG  G+GK+ +A    
Sbjct: 69  FPAYKDISGYDFAASEINEATVRQLHRCEFIDGAQN-----IVLVGGPGTGKTHVATALG 123

Query: 82  -NIWSDKSRSTRFSNIAKSLDSILIDTRK------PVLLEDIDLLDFND----------- 123
                   R  RF +  + ++++  +  K         L  +DLL  ++           
Sbjct: 124 VQAIEHHRRKVRFFSTIELVNALEQEKAKGKAGQIAEALVRLDLLILDELGYLPFSTSGG 183

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             LFH+++ +++  +S+++T       W     D
Sbjct: 184 ALLFHLLSKLYER-TSVVITTNLSFSEWATVFGD 216


>gi|319651670|ref|ZP_08005797.1| ATPase [Bacillus sp. 2_A_57_CT2]
 gi|317396737|gb|EFV77448.1| ATPase [Bacillus sp. 2_A_57_CT2]
          Length = 421

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 59/179 (32%), Gaps = 30/179 (16%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G GK+ +A+  +   K      + +  +   + +   +        +LL+++ 
Sbjct: 43  MILYGPPGIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGKVILLLDEVH 102

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL--P 173
            LD              +  S  L+  T      +     P + SR     + ++     
Sbjct: 103 RLDKGKQDFLLPY---LENGSITLIGATTSNPYHAIN---PAIRSR---CQIFELKPLSA 153

Query: 174 DD---DFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           DD        ++ K     +RQ  +      ++      S       ++ ++   LS  
Sbjct: 154 DDIKKALTRALLDKERGLGNRQTEVTDDALTHLATA---SNGDVRSSLNALELAVLSTK 209


>gi|316965784|gb|EFV50458.1| putative ATPase, AAA family [Trichinella spiralis]
          Length = 781

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R  +L GP G GK+ LA+  + +
Sbjct: 111 PPRGFLLYGPPGCGKTLLAHAIAGE 135



 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   +++S     S     L ++ +   +  +
Sbjct: 442 ILLFGPPGCGKTLLAKAIANESGINFISVKGPELLNMYVGESERAV 487


>gi|282853315|ref|ZP_06262652.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139]
 gi|282582768|gb|EFB88148.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139]
 gi|314982855|gb|EFT26947.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA3]
 gi|315091173|gb|EFT63149.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL110PA4]
          Length = 717

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVRGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|255721295|ref|XP_002545582.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404]
 gi|240136071|gb|EER35624.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404]
          Length = 433

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A ++    I     ++ E
Sbjct: 210 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 261


>gi|239620734|ref|ZP_04663765.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132345|ref|YP_003999684.1| atpase for holliday junction resolvase [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|322689648|ref|YP_004209382.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691609|ref|YP_004221179.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239516310|gb|EEQ56177.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773948|gb|ADQ03436.1| ATPase for Holliday junction resolvase [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|320456465|dbj|BAJ67087.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460984|dbj|BAJ71604.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 459

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 28/144 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA I + +S          ++  K +  +L    + ++         
Sbjct: 63  VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 116

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 117 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 172

Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192
           +   + D  +E V   +  DR + 
Sbjct: 173 LESLEPDQLIELVQRALTDDRGLR 196


>gi|255714923|ref|XP_002553743.1| KLTH0E06006p [Lachancea thermotolerans]
 gi|238935125|emb|CAR23306.1| KLTH0E06006p [Lachancea thermotolerans]
          Length = 819

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+ V+ L GP G GK+ LA   +++SR+   S
Sbjct: 556 PAGVL-LWGPPGCGKTLLAKAVANESRANFIS 586


>gi|225452594|ref|XP_002281006.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 501

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 12/93 (12%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF------- 93
           DDL+  S  E+    I    +W    + L GP G+GKS + +  ++      +       
Sbjct: 262 DDLIAFSKAEEFYARIGR--AWKRGYL-LYGPPGTGKSTMISAMANLLGYDVYDLELTSV 318

Query: 94  -SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
             N       I I +R  +++EDID    ++ +
Sbjct: 319 KDNTELRRLLIEISSRSIIVIEDID-CSLDEEE 350


>gi|219123158|ref|XP_002181897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406498|gb|EEC46437.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 550

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+ V+ L GP G GK+ LA   + +S +   S     L    +   +  +
Sbjct: 314 PAGVM-LYGPPGCGKTLLAKAIAHESGANFISVKGPELLDKYVGESEKAV 362



 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89
          P R V+L GP G+GK+ LAN  + +  
Sbjct: 33 PPRGVLLRGPPGTGKTHLANAVAGQLG 59


>gi|212529968|ref|XP_002145141.1| cell division control protein Cdc48 [Penicillium marneffei ATCC
           18224]
 gi|210074539|gb|EEA28626.1| cell division control protein Cdc48 [Penicillium marneffei ATCC
           18224]
          Length = 822

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 374

Query: 155 L 155
           L
Sbjct: 375 L 375


>gi|195588464|ref|XP_002083978.1| GD14011 [Drosophila simulans]
 gi|194195987|gb|EDX09563.1| GD14011 [Drosophila simulans]
          Length = 611

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            L+    S   + V+L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 353 ALVSRAASVAVKRVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 411



 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA   S +
Sbjct: 174 PSRGLLLHGPPGCGKTFLARAISGQ 198


>gi|118577019|ref|YP_876762.1| AAA ATPase [Cenarchaeum symbiosum A]
 gi|118195540|gb|ABK78458.1| AAA ATPase [Cenarchaeum symbiosum A]
          Length = 709

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 28/119 (23%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRK--- 109
           R V+L GP G+GK+ LA   + ++ +              +    + L  +  +  +   
Sbjct: 212 RGVLLYGPPGTGKTLLAKAVAGETNANFSYIGGPEIMGKYYGESEERLREMFREAEENAP 271

Query: 110 -PVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
             + +++ID +    ++          +QL  +++ + +    +++ A   P S    L
Sbjct: 272 SIIFIDEIDSIAPKRDEVSGELEKRIVSQLLSLMDGMTRRGKVVVIAATNRPDSIDPAL 330


>gi|15790472|ref|NP_280296.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|169236208|ref|YP_001689408.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|10580970|gb|AAG19776.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|167727274|emb|CAP14060.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 759

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 70/211 (33%), Gaps = 46/211 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   ++++ S   S                 + +  +    +    
Sbjct: 506 VLLYGPPGTGKTLLAKAVANEANSNFISVKGPELLNKYVGESEKGVREVFEKARSNAPTV 565

Query: 111 VLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
           V  ++ID +                  +QL   ++ I   +  +++     P      L 
Sbjct: 566 VFFDEIDAIAGQRGRATSDSGVGERVVSQLLTELDGIEALEDVVVVATSNRPDLIDDAL- 624

Query: 157 DLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
            L   RL     + + +PD D    ++     D+ +  D  L   + QRM+  +      
Sbjct: 625 -LRPGRLD--RHIHVPVPDADARRAILDVHTRDKPLADDVDL-DVVAQRMDGFVGA---- 676

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
               D  AL      T +   E +      D
Sbjct: 677 ----DVEALV--REATMNATREFINSVDPAD 701


>gi|268574816|ref|XP_002642387.1| C. briggsae CBR-YMEL-1 protein [Caenorhabditis briggsae]
 gi|187025389|emb|CAP35857.1| CBR-YMEL-1 protein [Caenorhabditis briggsae AF16]
          Length = 670

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           V+LVGP G+GK+ LA   + +++   F       D +L+      + +  D  
Sbjct: 231 VLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKA 283


>gi|85717685|ref|ZP_01048622.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695508|gb|EAQ33429.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 251

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 62  QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 121

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 122 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 170


>gi|318608123|emb|CBY78097.1| ISPsy4, transposition helper protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 241

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 21/107 (19%)

Query: 65  RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK----------- 109
           R +I VG  G+GK+ LA       +      RF N+   ++ + +D              
Sbjct: 99  RNIIFVGGPGTGKTHLATALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 158

Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
              ++L+D+  L F+      LFH+I+ +H++ +S+++T       W
Sbjct: 159 LDLIVLDDLGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 204


>gi|260426610|ref|ZP_05780589.1| recombination factor protein RarA [Citreicella sp. SE45]
 gi|260421102|gb|EEX14353.1| recombination factor protein RarA [Citreicella sp. SE45]
          Length = 437

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++L GP G GK+ +A + +D +     + S I   +  +              
Sbjct: 51  ASGALSSLVLWGPPGVGKTTIARLLADATDLHFVQISAIFTGVPELRKVFEAA----RHR 106

Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163
             +   T LF    H  N   Q          ++L+   T              L SR +
Sbjct: 107 RTNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LLSRAQ 163

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + ++SL D + L +   K    R + +D      +++  +     A  L++++  +A
Sbjct: 164 VLVLERLSLADLERLAQRAEKELG-RALPLDGAAREALLEMADGDGRAALNLIEQV--MA 220

Query: 224 LSRGMGI-TRSLAAEVLKETQQCD 246
                 + T  L   +++   Q D
Sbjct: 221 WKTDAKLDTAQLTRRLMRRAAQYD 244


>gi|256822345|ref|YP_003146308.1| AAA ATPase central domain-containing protein [Kangiella koreensis
           DSM 16069]
 gi|256795884|gb|ACV26540.1| AAA ATPase central domain protein [Kangiella koreensis DSM 16069]
          Length = 451

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 33/183 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
           +I  GP G+GK+ LA + +  S +   +  A       I       +++          T
Sbjct: 54  LIFWGPPGTGKTTLARLIAQSSNAHFITISAVLAGVKDIRA----AVDEARQYQSQGKPT 109

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +L     T              L SR   A V  +
Sbjct: 110 ILFVDEVHRFNKAQQDAFLPYVEDGTLTFIGATTENPSFELNNA---LLSR---ARVFVL 163

Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               +  L+K+I +   D         + I      ++V   +         ++    LA
Sbjct: 164 KDLSETALDKLISRALTDEELGLGKYHLSIADDSRKHLVDAADGDGRRLLNFLELASELA 223

Query: 224 LSR 226
           L++
Sbjct: 224 LAK 226


>gi|225027995|ref|ZP_03717187.1| hypothetical protein EUBHAL_02264 [Eubacterium hallii DSM 3353]
 gi|224954709|gb|EEG35918.1| hypothetical protein EUBHAL_02264 [Eubacterium hallii DSM 3353]
          Length = 445

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + ++ + +      A +     ++       +D   +    T L
Sbjct: 59  LIFYGPPGTGKTTLAKVIANTTSANFVQMNATTSGKKDMEQAVSQA-KDAFGMYGKRTIL 117

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + +  +    
Sbjct: 118 FIDEIHRFNKAQQDYLLPFVEDGTVILIGATTENPYFEVNSA-LLSR---SQIFHLEPLA 173

Query: 175 DDFLEKVI-------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +  + +++        +        I ++ A +I +        A   V+
Sbjct: 174 ESDIYRLVKTAVEDNERGMGAYGAVITEEAARFIAEMAGGDARRALNAVE 223


>gi|170595872|ref|XP_001902553.1| transitional endoplasmic reticulum ATPase TER94 [Brugia malayi]
 gi|158589713|gb|EDP28598.1| transitional endoplasmic reticulum ATPase TER94, putative [Brugia
           malayi]
          Length = 351

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + + ++   S     L ++     +  + +  D  
Sbjct: 55  PSRGVLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKA 111


>gi|99082319|ref|YP_614473.1| Type I secretion system ATPase, PrtD [Ruegeria sp. TM1040]
 gi|99038599|gb|ABF65211.1| Type I secretion system ATPase PrtD [Ruegeria sp. TM1040]
          Length = 587

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   + ++GPSGSGKS LA +    + + R +     LD   +    P +L D       
Sbjct: 359 PGEAIGVIGPSGSGKSTLARV---LTGAWRAAAGTVRLDGAALSQYDPSVLGDHIGYLPQ 415

Query: 123 DTQLF 127
             +LF
Sbjct: 416 RVELF 420


>gi|58259205|ref|XP_567015.1| helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134107345|ref|XP_777557.1| hypothetical protein CNBA6790 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260251|gb|EAL22910.1| hypothetical protein CNBA6790 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223152|gb|AAW41196.1| helicase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 756

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
             PS V+ L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 439 DAPSGVL-LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 489


>gi|296417747|ref|XP_002838514.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634453|emb|CAZ82705.1| unnamed protein product [Tuber melanosporum]
          Length = 432

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 162 PWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 199


>gi|312113415|ref|YP_004011011.1| ATPase AAA [Rhodomicrobium vannielii ATCC 17100]
 gi|311218544|gb|ADP69912.1| AAA ATPase central domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 462

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 43/198 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPV-LLEDIDLLD 120
               ++L GP G GK+ +A   + +S +   S N    +D    +  K + +L D    D
Sbjct: 218 AGGNILLYGPPGCGKTLVARATAGESDARFLSVNPEDLIDKYPGEAEKRLRVLFDEARSD 277

Query: 121 FNDTQLFHIINSIHQYDSS--------------------------LLMTARTFPVSWGVC 154
                 F   + + Q   S                          L++ A   P  W + 
Sbjct: 278 TPAILFFDEFDVVSQRAKSSRESVSALVSAFASEIDGTQRNNSGVLVIVASNAP--WHLD 335

Query: 155 LPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-----S 208
                S R+++  +  +  PD +  +K++ K  A   I   + ++     R+ R     S
Sbjct: 336 RALFRSMRMQS--LFFVPPPDYEARKKILTKAIA--GIPGAEAVS---ADRIARKTDGFS 388

Query: 209 LVFAEKLVDKMDNLALSR 226
                 L D + N +L++
Sbjct: 389 GADLRALADLVSNASLTK 406


>gi|258621724|ref|ZP_05716755.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585955|gb|EEW10673.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 449

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFADRQIFID-------KKLAAYIV------QRMERSLVFAEKLVDKM 219
            +   + + + +  AD +  +          +   +        RM  + +     + + 
Sbjct: 166 LNQQEILQALHQAIADTECGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225

Query: 220 DNLALSRGMGITRSLAAEV 238
           D+        I   L AEV
Sbjct: 226 DD---QGRKQIDLPLLAEV 241


>gi|306526251|sp|P54813|YME1_CAEEL RecName: Full=ATP-dependent zinc metalloprotease YME1 homolog
 gi|224490507|emb|CAA88955.2| C. elegans protein M03C11.5, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 723

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           V+LVGP G+GK+ LA   + +++   F       D +L+      + +  D  
Sbjct: 284 VLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKA 336


>gi|195428164|ref|XP_002062144.1| GK17377 [Drosophila willistoni]
 gi|194158229|gb|EDW73130.1| GK17377 [Drosophila willistoni]
          Length = 1001

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA     +
Sbjct: 331 PSRGLLLHGPPGCGKTYLARAIGGQ 355



 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 745 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 793


>gi|156841249|ref|XP_001643999.1| hypothetical protein Kpol_1070p24 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114631|gb|EDO16141.1| hypothetical protein Kpol_1070p24 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 881

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S ST FS  A SL S  +   + ++
Sbjct: 628 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKFLGESEKLV 677


>gi|149238059|ref|XP_001524906.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451503|gb|EDK45759.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 832

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTR 108
           PS V++  GP G GK+ LA   +++SR+                 S  A           
Sbjct: 558 PSGVLM-WGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRARAS 616

Query: 109 KPVLL--EDIDLL------DFND------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            P ++  +++D L        ++        L   ++ ++      ++ A   P    + 
Sbjct: 617 TPCIIFFDELDALVPRRDNSMSESSSRVVNTLLTELDGLNDRKGVFVIGATNRPDM--ID 674

Query: 155 LPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----SL 209
              L   RL     +++  PD+    +++  +    Q  ID  +  + +   ER    S 
Sbjct: 675 PAMLRPGRLDKTLYIQLPTPDE--RFEILKTIVRANQSPIDNDVNLHEIAHEERCRNFSG 732

Query: 210 VFAEKLVDKMDNLALSR 226
                LV +    AL R
Sbjct: 733 ADLSSLVKEAAVSALKR 749


>gi|28378917|ref|NP_785809.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1]
 gi|254557122|ref|YP_003063539.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|300769682|ref|ZP_07079565.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|28271754|emb|CAD64660.1| chromosome segregation helicase (putative) [Lactobacillus plantarum
           WCFS1]
 gi|254046049|gb|ACT62842.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|300492725|gb|EFK27910.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 426

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 20/133 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++    D
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYISIN-PAIRSR---TQIFQVFPLTD 152

Query: 176 DFLEKVIVKMFAD 188
           D ++  + +  AD
Sbjct: 153 DDIQHAVERALAD 165


>gi|18976487|ref|NP_577844.1| proteasome-activating nucleotidase [Pyrococcus furiosus DSM 3638]
 gi|22096009|sp|Q8U4H3|PAN_PYRFU RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|18892030|gb|AAL80239.1| ATP-dependent 26S protease regulatory subunit [Pyrococcus furiosus
           DSM 3638]
          Length = 396

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ +A   + +  +T    +   L    I     ++ E
Sbjct: 170 PPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHE 221


>gi|68500033|gb|AAY97976.1| putative cointegrase [Plasmid pMCBF1]
 gi|133711793|gb|ABO36613.1| putative cointegrase [uncultured bacterium pMCBF6]
          Length = 270

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 40/137 (29%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-----NIWSDKSRST 91
            + R D +  +                   V+L+G  G+GK+ LA            +  
Sbjct: 87  RLHRGDFIAAAHN-----------------VVLIGGPGTGKTHLATAIGIEAIQHLGKRV 129

Query: 92  RFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFNDTQ---LFHIINSIH 134
           RF +  + ++++  +                  V+L+++  L F+      LFH+++ ++
Sbjct: 130 RFFSTVELVNALEQEKAHGKAGQLAYRLLYVDLVILDELGYLPFSQAGGALLFHLLSKLY 189

Query: 135 QYDSSLLMTARTFPVSW 151
           ++ +S+++T       W
Sbjct: 190 EH-TSVMITTNLSFAEW 205


>gi|320033041|gb|EFW14991.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 939

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 687 PGLLLYGPPGTGKTLLAKAVARESGATVLE 716


>gi|314965443|gb|EFT09542.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL082PA2]
          Length = 717

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVRGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQVAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|281204558|gb|EFA78753.1| cell division cycle protein 48 [Polysphondylium pallidum PN500]
          Length = 791

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 233 PPKGILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 292

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 293 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 352

Query: 155 L 155
           L
Sbjct: 353 L 353



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 506 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKA 562


>gi|255526660|ref|ZP_05393565.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
 gi|296187165|ref|ZP_06855562.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
 gi|255509640|gb|EET85975.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
 gi|296048200|gb|EFG87637.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans
           P7]
          Length = 348

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ LANI + +           +++           L D D+L  ++ 
Sbjct: 58  VLLYGPPGLGKTTLANIIATEMGGNLKVTSGPAIERAGDLAAILTSLNDYDVLFIDEI 115


>gi|251771186|gb|EES51768.1| IstB domain protein ATP-binding protein [Leptospirillum
           ferrodiazotrophum]
          Length = 263

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 20/111 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +++ GP+G GK+ LA      +    F  +  SL+ +L                  +   
Sbjct: 115 ILIAGPTGVGKTHLACALGQAACRQGFLTLFFSLNRLLEKMALARAQGRYLSLLKKLTAA 174

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLPD 157
             ++L+D  L      QL  I + +     SL  ++T +    +W   LPD
Sbjct: 175 SVIVLDDFGLRALTPLQLQDIYDLVDGRVESLSTIVTTQLPVENWREILPD 225


>gi|303285130|ref|XP_003061855.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456266|gb|EEH53567.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1036

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           R ++L G  GSGK+ L +  ++ + +T F+   ++ D +    +  V+L
Sbjct: 775 RAILLAGHPGSGKTLLTHAVANGAGATFFNVSPRNTDDVYAGKQSSVML 823


>gi|225574529|ref|ZP_03783139.1| hypothetical protein RUMHYD_02606 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038260|gb|EEG48506.1| hypothetical protein RUMHYD_02606 [Blautia hydrogenotrophica DSM
           10507]
          Length = 439

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 75/209 (35%), Gaps = 51/209 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + ++ + +    N  +   ++        ++        ND  +
Sbjct: 55  IIFYGPPGTGKTTLAKVIANTTSA----NFTQINATVAGKKDMEAVI----KQAQNDRGM 106

Query: 127 F-----------HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           F           H  N           +  + +L+ A T    + V    L SR   + +
Sbjct: 107 FGKKTILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SVI 162

Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV--FAEKLVDK 218
            ++   + + ++ +I +   D  + +      +D+    ++       +    A   ++ 
Sbjct: 163 FELKQLEKEEIKTLIRRAVKDPVKGMGNYHADLDEDALEFLA-----DMAGGDARTALNA 217

Query: 219 MDNLALSRGMG------ITRSLAAEVLKE 241
           ++   L+          IT  +A E +++
Sbjct: 218 IELGILTTQRSDDGRIHITLEVAQECIQK 246


>gi|209875637|ref|XP_002139261.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
 gi|209554867|gb|EEA04912.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
          Length = 680

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L GP G GK+ LA   + +S +   S
Sbjct: 435 ILLYGPPGCGKTLLAKAIARESNANFIS 462


>gi|207721635|ref|YP_002252074.1| transposase and helper protein (partial sequencesfused) [Ralstonia
           solanacearum MolK2]
 gi|206586796|emb|CAQ17381.1| putative transposase and helper protein (partial sequencesfused)
           [Ralstonia solanacearum MolK2]
          Length = 654

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 485 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 539

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 540 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 597

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 598 FTQWATAFAD 607


>gi|187736155|ref|YP_001878267.1| ATPase AAA [Akkermansia muciniphila ATCC BAA-835]
 gi|187426207|gb|ACD05486.1| AAA ATPase central domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 463

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            IL GP G GK+ LA I + ++       S +   +  +     +            + T
Sbjct: 59  FILWGPPGCGKTTLARILATRTSMHFAALSAVFSGMADLRKAFDEAAR----RREYGHGT 114

Query: 125 QLF----HIINSIHQYD 137
            LF    H  N   Q  
Sbjct: 115 LLFVDEIHRFNRAQQDG 131


>gi|159472777|ref|XP_001694521.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276745|gb|EDP02516.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 580

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 55/175 (31%), Gaps = 45/175 (25%)

Query: 62  WPSRV----------VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIA 97
           WP R           V+L GP G GK+ +A   +++S +                 S  A
Sbjct: 335 WPERFEALGLPAASGVLLYGPPGCGKTLVAKAVANESGANFISIKGPELLNKYVGESERA 394

Query: 98  KSLDSILIDTRKPVLL--EDIDLLDFND------------TQLFHIINSIHQYDSSLLMT 143
                       P +L  +++D L                 QL   ++ +       ++ 
Sbjct: 395 VRQLFARARAAHPCVLFFDELDALAPRRGTDNNQAAERVVNQLLTEMDGVDSRQGLFIVA 454

Query: 144 ARTFPVSWGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           A   P      L  L   RL+    V +  P D      I+K    R+  ++  +
Sbjct: 455 ATNRPDMIDPAL--LRPGRLEKVLYVPLPPPQD---RAAILK-AQVRKTPLEPDV 503



 Score = 35.1 bits (80), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GP G GK+ LAN  +++         A  + S +                  
Sbjct: 15  PPRGVLLHGPPGCGKTALANAIANECGVPFLRVSAPEIVSGMSGES-------------- 60

Query: 123 DTQLFHIINSIHQ 135
           + +L  + N   +
Sbjct: 61  EAKLRQLFNEARE 73


>gi|156837546|ref|XP_001642796.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113365|gb|EDO14938.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 362

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 47/144 (32%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------DSILIDTRK- 109
           PS V+ L GP G GK+ LA   + +S +   S    S+            D+I     K 
Sbjct: 126 PSGVL-LYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAIFSLANKI 184

Query: 110 ---PVLLEDIDLLDFNDTQLFH------------II---------------NSIHQYDSS 139
               + +++ID      T   H            +                N I+  DS+
Sbjct: 185 QPCMIFIDEIDSFLRERTSTDHEVTATLKAEFMTLWDGLVSNGRIMIVGATNRINDIDSA 244

Query: 140 LLMTARTFPVSWGVCLPDLCSRLK 163
            L   R  P  + + LPD   RLK
Sbjct: 245 FL---RRLPKRFLISLPDKEQRLK 265


>gi|94989334|ref|YP_597435.1| recombination factor protein RarA [Streptococcus pyogenes MGAS9429]
 gi|94993223|ref|YP_601322.1| recombination factor protein RarA [Streptococcus pyogenes MGAS2096]
 gi|94542842|gb|ABF32891.1| ATPase, AAA family [Streptococcus pyogenes MGAS9429]
 gi|94546731|gb|ABF36778.1| ATPase, AAA family [Streptococcus pyogenes MGAS2096]
          Length = 422

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +R               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                + +++M   T    +    P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++  I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|55378303|ref|YP_136153.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
 gi|55231028|gb|AAV46447.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
          Length = 741

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEE 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ +      +++ A     S    
Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDS---V 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD+   E+++      R + +   +
Sbjct: 339 DPALRRPGRFDREIEIGVPDEVGREEILQ--IHTRGMPLSDDV 379



 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   V+L GP G+GK+ +A   ++++ +   S
Sbjct: 495 PPSGVLLYGPPGTGKTLMAKAVANETDANFIS 526


>gi|71906933|ref|YP_284520.1| recombination factor protein RarA [Dechloromonas aromatica RCB]
 gi|71846554|gb|AAZ46050.1| Recombination protein MgsA [Dechloromonas aromatica RCB]
          Length = 437

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + + + +    +  A    S + + R+ V+  ++       T L
Sbjct: 53  MILWGPPGVGKTTLARMMATQFKCEFIALSAVF--SGIKEVREAVVQAEMWRGQGKRTIL 110

Query: 127 F----HIINSIHQYD 137
           F    H  N   Q  
Sbjct: 111 FVDEIHRFNKAQQDG 125


>gi|15675782|ref|NP_269956.1| recombination factor protein RarA [Streptococcus pyogenes M1 GAS]
 gi|13623007|gb|AAK34677.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
          Length = 422

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +R               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                + +++M   T    +    P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++  I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|16331432|ref|NP_442160.1| cell division protein FtsH [Synechocystis sp. PCC 6803]
 gi|2492510|sp|Q55700|FTSH2_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|1001602|dbj|BAA10230.1| cell division protein; FtsH [Synechocystis sp. PCC 6803]
          Length = 627

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 45/214 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 208 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 267

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 268 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 327

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       V +  PD    ++++     ++++   +     I +R       A
Sbjct: 328 ------MRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLA-PEVSIDSIARRTP-GFSGA 379

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             L + ++  A+       R  A  +L+     D
Sbjct: 380 -DLANLLNEAAILTARR--RKSAITLLEIDDAVD 410


>gi|14601782|ref|NP_148323.1| proteasome-activating nucleotidase [Aeropyrum pernix K1]
 gi|20532220|sp|Q9YAC7|PAN_AERPE RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|5105710|dbj|BAA81022.1| proteasome-activating nucleotidase [Aeropyrum pernix K1]
          Length = 409

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++ +T    +   L +  I     ++ E
Sbjct: 172 PPKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVRE 223


>gi|24987364|pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
           Thermophilus
 gi|24987365|pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
           From Thermus Thermophilus
 gi|24987366|pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
           Thermus Thermophilus
          Length = 254

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G GK+ LA   + ++R    +        + +      + +
Sbjct: 52  VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 99


>gi|303247806|ref|ZP_07334075.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans
           JJ]
 gi|302490890|gb|EFL50789.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans
           JJ]
          Length = 609

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GP G+GK+ LA   + ++    FS        + +                     
Sbjct: 194 VLLIGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRELFVQAKEKAPCI 253

Query: 111 VLLEDIDLLDFN------------DTQLFHIINSIHQYD-----SSLLMTARTFPVSWGV 153
           + ++++D +  +            +  L  +   +           ++M A   P +   
Sbjct: 254 IFIDELDAIGKSRAGAIVGGHDEREQTLNQL--LVEMDGFDPRVGVIIMAATNRPETLDP 311

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+A      V +  PD    E ++    A   + +  ++   ++ R      
Sbjct: 312 AL------LRAGRFDRQVLVDKPDVAGREAILRVHAAK--VILGPEVDLSVIARKTPGFS 363

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  AL     
Sbjct: 364 GA-DLANAINEAALLAARK 381


>gi|284928911|ref|YP_003421433.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
 gi|284809370|gb|ADB95075.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A]
          Length = 586

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 43/204 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 172 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENTPCL 231

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +L+ A   P      L
Sbjct: 232 IFIDEIDAVGRQRGVGYGGGNDEREQTLNQLLTEMDGFEGNSGIILIAATNRPDVLDAAL 291

Query: 156 PDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAE 213
               SR  +    V +  PD    + ++      R   I + +    I +R       A 
Sbjct: 292 ----SRPGRFDRQVIVDYPDLKGRQGILEVH--SRNKKISESVSLETIARRTP-GFTGA- 343

Query: 214 KLVDKMDNLAL--SRGMGITRSLA 235
            L + ++  A+  +R    T S+ 
Sbjct: 344 DLANLLNEAAIFTARRRKKTISMT 367


>gi|255642031|gb|ACU21282.1| unknown [Glycine max]
          Length = 363

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 35/150 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P + V+L GP G+GK+ LA   + +SR+   +                 +A         
Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESRAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 177

Query: 107 TRKPVLLEDIDLLDFNDTQLFH--IINS------------IHQYDSSLLMTARTFPVSWG 152
               + ++++D          H  ++N               Q    +++ A   P    
Sbjct: 178 QPAIIFIDEVDSFLGQRRGTDHEAMLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELD 237

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             +  L  RL  A   +I +PD     +++
Sbjct: 238 EAI--LR-RLPQA--FEIGIPDQRERAEIL 262


>gi|224113871|ref|XP_002316599.1| predicted protein [Populus trichocarpa]
 gi|222859664|gb|EEE97211.1| predicted protein [Populus trichocarpa]
          Length = 553

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 70/210 (33%), Gaps = 33/210 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--LLEDI---DLL 119
             +IL GP G+GK+ +A      + S   S+      S +    K      ED     L 
Sbjct: 163 PSIILWGPPGTGKTSIARAIVTSANSQGSSSYRFVSLSAVTCGVKDARDAFEDARKFKLK 222

Query: 120 DFNDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +   T LF    H  N         + +  + + + A T   S+ +  P L SR +  T+
Sbjct: 223 NSKRTVLFLDEVHRFNKSQQDSFLPVIEDGTIVFIGATTENPSFHLVTP-LLSRCRVLTL 281

Query: 168 VKISLPDDD--FLEKV------IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             +            V      + K      + + +    ++    +     A   ++ +
Sbjct: 282 SPLKPHHVQTILKRAVNDPDKGLSKSLGSLGVDVSEDAVEFLSTNCD---GDARVALNAL 338

Query: 220 DNLALSRGMGI----TRSLAAEVLKETQQC 245
           +  A +    +       LA+  L + ++ 
Sbjct: 339 EISAATAAARVGSDGDLRLASVALDDAKEA 368


>gi|154290380|ref|XP_001545786.1| AAA family ATPase [Botryotinia fuckeliana B05.10]
 gi|150847766|gb|EDN22959.1| AAA family ATPase [Botryotinia fuckeliana B05.10]
          Length = 820

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 565 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKFLGESEKLV 614


>gi|76803147|ref|YP_331242.1| proteasome-activating nucleotidase [Natronomonas pharaonis DSM
           2160]
 gi|76559012|emb|CAI50610.1| proteasome-activating nucleotidase 1 [Natronomonas pharaonis DSM
           2160]
          Length = 405

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  +L    
Sbjct: 184 PPTGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVQKFIGEGARLVRDLFELAAER 243

Query: 123 DTQL 126
           +  +
Sbjct: 244 EPAI 247


>gi|50552452|ref|XP_503636.1| YALI0E06655p [Yarrowia lipolytica]
 gi|49649505|emb|CAG79218.1| YALI0E06655p [Yarrowia lipolytica]
          Length = 774

 Score = 40.9 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 40/173 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P R V+L GP G+GK+ L    + +S +   +                SL +I  + RK 
Sbjct: 271 PPRGVLLHGPPGTGKTMLLRAVAQESNAHVLTINGPSIVSKYLGETESSLRAIFEEARKY 330

Query: 111 ----VLLEDIDLL----DFND---------TQLFHIINSIHQ--YDSSLLMTARTFPVSW 151
               V +++ID L    D ++           L  +++ + Q      +++ +   P + 
Sbjct: 331 QPAIVFIDEIDALVPRRDGDESGQAESRVVATLLTLMDGMSQSASAKIVVVGSTNRPNAI 390

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
               P L    +A      V+I +P+ +    ++    AD    + ++   YI
Sbjct: 391 D---PALR---RAGRFDREVEIGIPNAEARLSILSIQMADMPHNMSEEDIQYI 437


>gi|317181763|dbj|BAJ59547.1| recombination factor protein RarA [Helicobacter pylori F57]
          Length = 391

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 69/189 (36%), Gaps = 25/189 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSL---DSILIDTRKPVLLE 114
                 GP G GK+ LA I +           +T F      L   +      +  + ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEGLRLKLKNYQNTLLKPVIFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+K+  K     +  I+     Y++     S   A  L++ +D  A      I   +
Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202

Query: 235 AAEVLKETQ 243
             E L+  +
Sbjct: 203 TLETLQSLR 211


>gi|315094259|gb|EFT66235.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL060PA1]
          Length = 717

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVRGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQVAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|325107955|ref|YP_004269023.1| recombination protein MgsA [Planctomyces brasiliensis DSM 5305]
 gi|324968223|gb|ADY59001.1| Recombination protein MgsA [Planctomyces brasiliensis DSM 5305]
          Length = 453

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 75/202 (37%), Gaps = 34/202 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111
             +I  GP G+GK+ LA + + K+ +                + + K+ DS+    ++ +
Sbjct: 54  GSLIFYGPPGTGKTTLARLIARKTGAGWIGLNAASCGVKEVRAALQKASDSLATTGKRTI 113

Query: 112 L-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           L ++++         +            +++    T    +   +  L SR   + + + 
Sbjct: 114 LFVDELHHFTKTQQDVL----LPELEQGTVIFIGATTDNPFFALVSALLSR---SHIFEF 166

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRME----RSLVFAEKLVDKM 219
                + L+ ++    AD  R +      + ++   ++ +  +    R+L   E  V  +
Sbjct: 167 EPLSVEALKGLLKNALADSARGLGGYHAEVTEEALDFLAESADGDARRALSALEIAV--L 224

Query: 220 DNLALSRGMGITRSLAAEVLKE 241
              A +    +  ++A E L+ 
Sbjct: 225 SVAAENERSFVDLAVAEESLQR 246


>gi|300871012|ref|YP_003785884.1| Holliday junction resolvase-like ATPase [Brachyspira pilosicoli
           95/1000]
 gi|300688712|gb|ADK31383.1| helicase subunit of the Holliday junction resolvase-like ATPase
           [Brachyspira pilosicoli 95/1000]
          Length = 433

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 27/179 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSILIDTRKPVLLEDIDLLDF 121
           ++  GP G GKS +A+I + K++       A       +   +    K +  E   +L  
Sbjct: 51  MVFFGPPGVGKSTVASIIAKKTKREYVKLNAVLSNVSEIREAIKKAEKNLSNEKKTILFI 110

Query: 122 NDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           ++    H  N   Q        + ++++   T    +      L SR+    + +    +
Sbjct: 111 DEI---HRFNKSQQDALLPAVENGTIILIGSTTQNPYFYLTNALLSRI---MLFEFKNLE 164

Query: 175 DDFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           D+ + + +V    D R +      ++KK    IV+    S     K +  ++   L+  
Sbjct: 165 DEDIREAVVNAIKDKRGLGEEDIDVEKKAIDLIVKF---SHGDVRKALTYLETSYLATQ 220


>gi|189191032|ref|XP_001931855.1| cell division protease ftsH [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187973461|gb|EDU40960.1| cell division protease ftsH [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 784

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 43/208 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR----KP 110
           V+LVGP G+GK+ LA   + ++                    AK +  +    R      
Sbjct: 346 VLLVGPPGTGKTLLARACAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFTAARSKAPAI 405

Query: 111 VLLEDIDLLDF---------NDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           V ++++D +           +   L  ++N      Q    + + A   P      L   
Sbjct: 406 VFIDELDAVGGKRKSRDANYHRQTLNQLLNDLDGFDQSTGVIFIAATNHPELLDQAL--- 462

Query: 159 CSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
              L+       V++ LPD      ++       ++  D  L++  + R       AE  
Sbjct: 463 ---LRPGRFDRHVQVELPDVTGRLAILKYHTKKIRLSPDIDLSS--IARGTPGFSGAE-- 515

Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQ 243
           ++ + N A  R   +     +  L + +
Sbjct: 516 LENLANSAAIRASKLQAKFVS--LNDME 541


>gi|91094943|ref|XP_967788.1| PREDICTED: similar to 26S protease regulatory subunit S10b
           [Tribolium castaneum]
 gi|270016772|gb|EFA13218.1| hypothetical protein TcasGA2_TC010321 [Tribolium castaneum]
          Length = 392

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 220

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 221 ------MFNYAKDHQ 229


>gi|189438904|ref|YP_001953985.1| recombination factor protein RarA [Bifidobacterium longum DJO10A]
 gi|32700050|gb|AAP86675.1| putative GTP-binding protein [Bifidobacterium longum subsp.
           infantis]
 gi|189427339|gb|ACD97487.1| ATPase for Holliday junction resolvase [Bifidobacterium longum
           DJO10A]
          Length = 459

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 28/144 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA I + +S          ++  K +  +L    + ++         
Sbjct: 63  VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 116

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 117 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 172

Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192
           +   + D  +E V   +  DR + 
Sbjct: 173 LESLEPDQLIELVQRALTDDRGLR 196


>gi|325185486|emb|CCA19969.1| ribosome biogenesis ATPase RIX7 putative [Albugo laibachii Nc14]
          Length = 770

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 49/163 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R ++L GP G+GK+ LAN  + +S +      A  +                   + +
Sbjct: 192 PPRGILLHGPPGTGKTMLANSIAGESGAAFIRISAPEIVSGMSGESEQKVRELFQEAVKN 251

Query: 107 TRKPVLLEDIDLLDFNDTQL------------------FHIINSIHQYDSSLLMTARTFP 148
               V +++ID +      +                    + N        +L+   T  
Sbjct: 252 APAIVFIDEIDAITPKRETVQRGMERRIVAQLLTSIDSLSLEN---TGGKPVLIIGAT-- 306

Query: 149 VSWGVCLPD-LCSRLKAATVVK----ISLPDDDFLEKVIVKMF 186
                  PD L S L+ A        + +PD+     ++ K+ 
Sbjct: 307 -----NRPDALDSALRRAGRFDREICLGIPDETARMSILQKLA 344



 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++S +   S     L    +   +  +
Sbjct: 507 VLLYGPPGCGKTLLAKAIANESEANFISIKGPELLDKYVGESERAV 552


>gi|331239862|ref|XP_003332583.1| hypothetical protein PGTG_12611 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309311573|gb|EFP88164.1| hypothetical protein PGTG_12611 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 795

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R ++L GP G GK+ LAN  +++      +  + S+
Sbjct: 733 PIRGLLLCGPPGCGKTMLANAIANQLGVRLINVSSTSI 770


>gi|304389395|ref|ZP_07371358.1| IS21 family element [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327205|gb|EFL94440.1| IS21 family element [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 250

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 24/111 (21%)

Query: 67  VILVGPSGSGKSCL-------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107
           +IL+GP G+GK+ L                   A  W  ++  T  ++   +     +  
Sbjct: 103 IILLGPPGTGKTHLAVSLGMKVIEQNTNVLFNTAQGW-IETLQTAHNHAQLAQALKRLKK 161

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
              +++++   L  +       F +I+  ++   SL++T+      WG  L
Sbjct: 162 YPLLIIDEFGYLPIDADAANLFFQLISDRYEQG-SLIITSNLPFSQWGEIL 211


>gi|256833464|ref|YP_003162191.1| Microtubule-severing ATPase [Jonesia denitrificans DSM 20603]
 gi|256686995|gb|ACV09888.1| Microtubule-severing ATPase [Jonesia denitrificans DSM 20603]
          Length = 414

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + V+  G  G+GK+ LA I +D S +  +     S+
Sbjct: 194 PVKGVLFTGAPGTGKTHLARIIADVSGAVFYQVSGPSI 231


>gi|226363848|ref|YP_002781630.1| hypothetical protein ROP_44380 [Rhodococcus opacus B4]
 gi|226242337|dbj|BAH52685.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 350

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 47  SAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSDK----SRSTRFSNI 96
            A   AV ++D      +      R V L GP G GK+ L + +       SR   F   
Sbjct: 13  EAQRSAVAVLDETADGLAQGRPGVRGVYLWGPVGRGKTWLMDRFHAASEVPSRRVHFHAF 72

Query: 97  AKSLDSIL-----IDTRKPVLLEDIDLLDFNDTQLFHIIN------------SIHQYDSS 139
            + L +       ID      L D+ LL F++   FH+ +            ++     +
Sbjct: 73  FRRLHADAHTLGSIDLAIDAALGDVRLLCFDE---FHLHDVGDAMLVARLLEALFARGIT 129

Query: 140 LLMTARTFPVSW 151
           L++T+   P   
Sbjct: 130 LVVTSNYPPEGL 141


>gi|223986982|ref|ZP_03636940.1| hypothetical protein HOLDEFILI_04266 [Holdemania filiformis DSM
           12042]
 gi|225572818|ref|ZP_03781573.1| hypothetical protein RUMHYD_01009 [Blautia hydrogenotrophica DSM
           10507]
 gi|227824262|ref|ZP_03989094.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229827143|ref|ZP_04453212.1| hypothetical protein GCWU000182_02528 [Abiotrophia defectiva ATCC
           49176]
 gi|291459472|ref|ZP_06598862.1| replicative DNA helicase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|331084546|ref|ZP_08333646.1| hypothetical protein HMPREF0992_02570 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|223961050|gb|EEF65604.1| hypothetical protein HOLDEFILI_04266 [Holdemania filiformis DSM
           12042]
 gi|225039875|gb|EEG50121.1| hypothetical protein RUMHYD_01009 [Blautia hydrogenotrophica DSM
           10507]
 gi|226904761|gb|EEH90679.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229788761|gb|EEP24875.1| hypothetical protein GCWU000182_02528 [Abiotrophia defectiva ATCC
           49176]
 gi|291417929|gb|EFE91648.1| replicative DNA helicase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291557359|emb|CBL34476.1| phage DNA replication protein (predicted replicative helicase
           loader) [Eubacterium siraeum V10Sc8a]
 gi|330401096|gb|EGG80690.1| hypothetical protein HMPREF0992_02570 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 285

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 28/131 (21%)

Query: 50  EQAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDKSR-----------STRFSNI 96
           E A   +++W +   R +  +L G  G+GKS  A   ++              +    ++
Sbjct: 111 EHAHFYVENWETMKERNIGYLLWGGVGTGKSYFAGCIANALMEREIPVCMTNFALILGDL 170

Query: 97  AKSLDSI-----LIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFP 148
           A S +        + +   ++L+D  +    +  L  + N I   ++    L++T     
Sbjct: 171 AASFEGRNEYISRLCSFPLLILDDFGMERGTEYGLEQVYNVIDSRYRSGRPLIVTT---- 226

Query: 149 VSWGVCLPDLC 159
               + L DL 
Sbjct: 227 ---NLTLEDLQ 234


>gi|170717512|ref|YP_001784604.1| recombination factor protein RarA [Haemophilus somnus 2336]
 gi|168825641|gb|ACA31012.1| AAA ATPase central domain protein [Haemophilus somnus 2336]
          Length = 446

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 43/207 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDI--DLLDFN 122
           +I  GP G+GK+ LA I + +  +   R S +   +  I         +E    + L   
Sbjct: 53  MIFWGPPGTGKTTLAEIIAQQIHAQVERISAVTAGVKEIRES------IERAKQNRLMGQ 106

Query: 123 DTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVV 168
            T LF    H  N           +  + + +  T              L SR+K   V 
Sbjct: 107 QTILFVDEVHRFNKTQQDAFLPHIENGTIIFIGATTENPSFELNNA---LLSRVK---VY 160

Query: 169 KISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERS----LVFAEKLVD 217
            +       +  V+     D        ++   + +   + + +       L   E +VD
Sbjct: 161 ILKPLTTSNIVTVLQNAIQDAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVD 220

Query: 218 KMDNLALSRGMGITRSLAAEVLKETQQ 244
             D     +G  I   L  EVL E Q 
Sbjct: 221 MADET--EKGKLINHRLLTEVLGERQA 245


>gi|145255480|ref|XP_001398977.1| 26S protease regulatory subunit 6A [Aspergillus niger CBS 513.88]
 gi|134084569|emb|CAK97445.1| unnamed protein product [Aspergillus niger]
          Length = 464

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 250 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 310 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 367

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++    ++      R++ +D ++
Sbjct: 368 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVDDRV 403


>gi|71911512|ref|YP_283062.1| recombination factor protein RarA [Streptococcus pyogenes MGAS5005]
 gi|71854294|gb|AAZ52317.1| ATPase, AAA family [Streptococcus pyogenes MGAS5005]
          Length = 422

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +R               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                + +++M   T    +    P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++  I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|24987367|pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
           Thermophilus
          Length = 278

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G GK+ LA   + ++R    +        + +      + +
Sbjct: 76  VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 123


>gi|69247875|ref|ZP_00604524.1| IstB-like ATP-binding protein [Enterococcus faecium DO]
 gi|257883151|ref|ZP_05662804.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257891796|ref|ZP_05671449.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|258616917|ref|ZP_05714687.1| hypothetical protein EfaeD_14576 [Enterococcus faecium DO]
 gi|260559302|ref|ZP_05831484.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261209549|ref|ZP_05923900.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289567265|ref|ZP_06447647.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293559642|ref|ZP_06676174.1| transposase [Enterococcus faecium E1162]
 gi|294619596|ref|ZP_06699025.1| transposase [Enterococcus faecium E1679]
 gi|314939376|ref|ZP_07846616.1| IstB-like ATP binding protein [Enterococcus faecium TX0133a04]
 gi|314942967|ref|ZP_07849777.1| IstB-like ATP binding protein [Enterococcus faecium TX0133C]
 gi|314953896|ref|ZP_07856757.1| IstB-like ATP binding protein [Enterococcus faecium TX0133A]
 gi|314993493|ref|ZP_07858852.1| IstB-like ATP binding protein [Enterococcus faecium TX0133B]
 gi|314997425|ref|ZP_07862373.1| IstB-like ATP binding protein [Enterococcus faecium TX0133a01]
 gi|68194660|gb|EAN09145.1| IstB-like ATP-binding protein [Enterococcus faecium DO]
 gi|257818809|gb|EEV46137.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257828156|gb|EEV54782.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|260074662|gb|EEW62982.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260076495|gb|EEW64271.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289160942|gb|EFD08860.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291594171|gb|EFF25616.1| transposase [Enterococcus faecium E1679]
 gi|291606397|gb|EFF35799.1| transposase [Enterococcus faecium E1162]
 gi|313588513|gb|EFR67358.1| IstB-like ATP binding protein [Enterococcus faecium TX0133a01]
 gi|313592036|gb|EFR70881.1| IstB-like ATP binding protein [Enterococcus faecium TX0133B]
 gi|313594130|gb|EFR72975.1| IstB-like ATP binding protein [Enterococcus faecium TX0133A]
 gi|313598298|gb|EFR77143.1| IstB-like ATP binding protein [Enterococcus faecium TX0133C]
 gi|313641337|gb|EFS05917.1| IstB-like ATP binding protein [Enterococcus faecium TX0133a04]
          Length = 242

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 24/125 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV----------LLEDI 116
           ++ VG  G+GK+ LA     K+ S   S     +++++      +            E  
Sbjct: 97  IVCVGSPGTGKTHLAIALGRKACSEGVSTKFFRVNNLVEQLENALKKQQLASFKKRFETT 156

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +L+  ++             LF +I+  ++   S+++T+      W     D  SRL AA
Sbjct: 157 ELIILDEMGYLPLTKEGAELLFQLISDWYE-QKSIIITSNLEFSQWNRVFMD--SRLTAA 213

Query: 166 TVVKI 170
            V ++
Sbjct: 214 LVDRL 218


>gi|288919383|ref|ZP_06413717.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f]
 gi|288349272|gb|EFC83515.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f]
          Length = 174

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 22/107 (20%)

Query: 67  VILVGPSGSGKSCLA---NIWSDKSRSTRFSNIAKSLDSILIDTRKP------------- 110
           VIL+GP G GK+ LA    + + ++  +   + A +  + L    +              
Sbjct: 22  VILLGPPGIGKTHLAIGLGVKAAQAGCSVLFDTANNWITRLAAAHQAGHLTTELKKIRRY 81

Query: 111 --VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
             ++++++  + F+       F ++ +      S+L+T+      WG
Sbjct: 82  KLIIIDEVGYIPFDQDAANLFFQLV-ASRYEQGSILVTSNLPFGRWG 127


>gi|253690315|ref|YP_003019505.1| PTS system transcriptional activator [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756893|gb|ACT14969.1| PTS system transcriptional activator [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 869

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHS--AIEQAVRLIDSWPSWPSRVV--ILVGPSG 74
            +P+   +            S    L+ +  +++QA+    S  ++P R +  +L G SG
Sbjct: 67  TRPQTSPD-AVIPLKHDDVFSE---LIGATGSLQQAISSCRSAVNYPGRGLPILLSGESG 122

Query: 75  SGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
            GKS LA +    ++      + K L  +      
Sbjct: 123 VGKSHLAAMIHLYAQDRGIVALDKPLVELNCADYA 157


>gi|255591254|ref|XP_002535477.1| werner helicase interacting protein, putative [Ricinus communis]
 gi|223522990|gb|EEF26907.1| werner helicase interacting protein, putative [Ricinus communis]
          Length = 422

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +R               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                + +++M   T    +    P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++  I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|226507260|ref|NP_001145788.1| hypothetical protein LOC100279295 [Zea mays]
 gi|219884425|gb|ACL52587.1| unknown [Zea mays]
          Length = 331

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 25/101 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P   ++L GP G GK+ LA+  + ++    +   A  + S +    +             
Sbjct: 216 PVAGLLLHGPPGCGKTTLAHAIAIETGVLFYKISAPEVVSGVSGASEENIRGLFQKAYRT 275

Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144
               V +++ID +           N   + +  +   LMT 
Sbjct: 276 APSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 310


>gi|150401783|ref|YP_001325549.1| replication factor C large subunit [Methanococcus aeolicus
           Nankai-3]
 gi|166225152|sp|A6UWR5|RFCL_META3 RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|150014486|gb|ABR56937.1| AAA ATPase central domain protein [Methanococcus aeolicus Nankai-3]
          Length = 474

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 29/182 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDT 107
           P  V+ LVGP G GK+ L N  ++          A                S    +   
Sbjct: 38  PKPVL-LVGPPGCGKTTLTNALANDYGFELIELNASDKRNKDIIRQIVGGASSSKSITGK 96

Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           R  ++L+++D L    +   +  II  I    + +++TA        +  P L S     
Sbjct: 97  RVLIVLDEVDGLSGNSDRGGVSEIIKIIKNAKNPIILTAN------DIYKPSLMSLRTVC 150

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
            +VKI     + +  V+ ++       +D K+   I +     +  A       D  +L+
Sbjct: 151 NIVKIGSVHTNSIVPVLRRISLKEGFEVDDKILKIIAKHAGGDVRSAIN-----DLESLA 205

Query: 226 RG 227
            G
Sbjct: 206 MG 207


>gi|119190207|ref|XP_001245710.1| hypothetical protein CIMG_05151 [Coccidioides immitis RS]
          Length = 986

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 715 PGLLLYGPPGTGKTLLAKAVARESGATVLE 744


>gi|73669293|ref|YP_305308.1| AAA ATPase family protein [Methanosarcina barkeri str. Fusaro]
 gi|72396455|gb|AAZ70728.1| AAA family ATPase [Methanosarcina barkeri str. Fusaro]
          Length = 372

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 16/82 (19%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------- 109
           + +  W  R ++  GPSG+GK+ LA   ++K+        A  L    +           
Sbjct: 146 ERFGKWAPRNILFFGPSGTGKTMLAKALANKTDVLIIPVKATQLIGEYVGEGARQIHQLY 205

Query: 110 ---------PVLLEDIDLLDFN 122
                     + ++++D +  +
Sbjct: 206 DRAEEMAPCIIFIDELDAIALD 227


>gi|25029098|ref|NP_739152.1| putative cell division protein FtsH [Corynebacterium efficiens
           YS-314]
 gi|23494385|dbj|BAC19352.1| putative cell division protein FtsH [Corynebacterium efficiens
           YS-314]
          Length = 812

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 68/210 (32%), Gaps = 57/210 (27%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    FS        + +                   
Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKQAKENSP 260

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFP----- 148
             + +++ID +            D  +  L  +   ++      S +LM A   P     
Sbjct: 261 CIIFIDEIDAVGRARGSGMGGGHDEREQTLNQLLVEMDGFGDRGSVILMAATNRPDVLDP 320

Query: 149 ---------VSWGVCLPDLCSRLKAATVVKIS------LPDDDFLEKVIVKMFADRQIFI 193
                        V  PDL  R     +++I        PD   L+ +  +        +
Sbjct: 321 ALLRPGRFDRQIPVTAPDLKGR---EQILEIHAKGKPFAPD-ANLKALAKRTAGMSGADL 376

Query: 194 DKKL--AAYIVQRMERSLVFAEKLVDKMDN 221
              L  AA +  R+  + + A+ L +  D 
Sbjct: 377 GNVLNEAALLTARIGGNAITADALEEATDR 406


>gi|67476467|ref|XP_653833.1| 26S protease regulatory subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56470829|gb|EAL48447.1| 26S protease regulatory subunit, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 410

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 188 PPKGVILYGPPGTGKTLLAKAVANETSATFLRIVGSELIQKYLGDGPKLVRE 239


>gi|326477856|gb|EGE01866.1| vacuolar protein sorting-associated protein 4 [Trichophyton equinum
           CBS 127.97]
          Length = 434

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + +++ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIVF 229


>gi|313125329|ref|YP_004035593.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
           11551]
 gi|312291694|gb|ADQ66154.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM
           11551]
          Length = 409

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  +L    
Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAADR 243

Query: 123 DTQL 126
           +  +
Sbjct: 244 EPAV 247


>gi|310287909|ref|YP_003939167.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum S17]
 gi|311064790|ref|YP_003971515.1| cell division protein FtsH [Bifidobacterium bifidum PRL2010]
 gi|309251845|gb|ADO53593.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum S17]
 gi|310867109|gb|ADP36478.1| FtsH Cell division protein [Bifidobacterium bifidum PRL2010]
          Length = 697

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    ++        + +      + +  D    N  
Sbjct: 250 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 309

Query: 125 QL 126
            +
Sbjct: 310 AI 311


>gi|302762985|ref|XP_002964914.1| ATP-binding cassette transporter [Selaginella moellendorffii]
 gi|300167147|gb|EFJ33752.1| ATP-binding cassette transporter [Selaginella moellendorffii]
          Length = 1441

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           P R ++L+GP GSGKS L    + K   +  +  A + +   +D  + 
Sbjct: 201 PGRTMLLLGPPGSGKSTLLRALAGKLDQSLKTTGAVTYNGHTLDEFEA 248


>gi|297834890|ref|XP_002885327.1| hypothetical protein ARALYDRAFT_479491 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331167|gb|EFH61586.1| hypothetical protein ARALYDRAFT_479491 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1003

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 43/144 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P + ++L GP G+GK+ LA   + ++ +   S    +L S                    
Sbjct: 748 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKL 807

Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144
            PV++  +++D L       F H     + N                 L++ A       
Sbjct: 808 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDL 867

Query: 145 -----RTFPVSWGVCLPDLCSRLK 163
                R  P    V LPD  +RLK
Sbjct: 868 DDAVIRRLPRRIYVNLPDAENRLK 891


>gi|94986800|ref|YP_594733.1| ABC transporter ATPase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731049|emb|CAJ54412.1| ATPase components of ABC transporters with duplicated ATPase
           domains [Lawsonia intracellularis PHE/MN1-00]
          Length = 665

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--------RVVILVG 71
           +P+ K ++L F +P    +  D +++ +A   +    D    WPS        + + LVG
Sbjct: 300 KPEIKRKELKFIWPTP--LKADKVILSAA-ALSFSFPDGRQLWPSLTFSLLNGQRIALVG 356

Query: 72  PSGSGKSCLANIWSDK 87
           P+G GKS L  I + +
Sbjct: 357 PNGCGKSTLLKIIAGQ 372


>gi|21325468|dbj|BAC00090.1| ATP-dependent Zn proteases [Corynebacterium glutamicum ATCC 13032]
          Length = 860

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 49/206 (23%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 206 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSP 265

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFP----- 148
             + +++ID +            D  +  L  +   ++        +LM A   P     
Sbjct: 266 CIIFVDEIDAVGRARGSGMGGGHDEREQTLNQLLVEMDGFGDRQGVILMAATNRPDVLDP 325

Query: 149 ---------VSWGVCLPDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197
                        V  PDL  R +   V     P   D  ++ +  +        +   L
Sbjct: 326 ALLRPGRFDRQIPVTNPDLRGREQILEVHAKGKPFAPDADIKALAKRTAGMSGADLANVL 385

Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221
             AA +  R+  +++ A+ L +  D 
Sbjct: 386 NEAALLTARVGGNVITADALEEATDR 411


>gi|220678160|emb|CAX13256.1| nuclear VCP-like [Danio rerio]
          Length = 796

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R  +L GP G GK+ LA   + ++        A  L                +  +  
Sbjct: 259 PPRGFLLHGPPGCGKTLLAQAVAGETALPLLKISAPELVSGVSGESEQKLRELFEQAISS 318

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   NS+ +    L++ A   P S 
Sbjct: 319 APCILFIDEIDAITPKRETASKDMERRIVAQLLTCMDDLNSMLEPAQVLVIGATNRPDSL 378

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+    K++  +   R+I +   
Sbjct: 379 DPALR------RAGRFDREICLGIPDEGARMKILKTLC--RKIRLPDD 418



 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   +++S     S     L ++ +   +  +
Sbjct: 557 LLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 602


>gi|71904346|ref|YP_281149.1| recombination factor protein RarA [Streptococcus pyogenes MGAS6180]
 gi|139474470|ref|YP_001129186.1| recombination factor protein RarA [Streptococcus pyogenes str.
           Manfredo]
 gi|306826574|ref|ZP_07459881.1| AAA family ATPase [Streptococcus pyogenes ATCC 10782]
 gi|71803441|gb|AAX72794.1| ATPase, AAA family [Streptococcus pyogenes MGAS6180]
 gi|134272717|emb|CAM30989.1| putative ATPase [Streptococcus pyogenes str. Manfredo]
 gi|304431212|gb|EFM34214.1| AAA family ATPase [Streptococcus pyogenes ATCC 10782]
          Length = 422

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +R               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                + +++M   T    +    P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++  I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|116618925|ref|YP_819296.1| recombination factor protein RarA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097772|gb|ABJ62923.1| Recombination protein MgsA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 428

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  S+ + R  N A          ++   +     +LL++I 
Sbjct: 43  MILYGPPGTGKTSIASAIAGSSKYAFRMLNAATDSQKDLQIVVEEAKMSGTVVLLLDEIH 102

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L+    D  L H+     +  + +L+ A T      V  P + SR     + +++   +
Sbjct: 103 RLNKIKQDFLLPHL-----ESGAIILIGATTENPYINVT-PAIRSR---TQIFEVNSLSE 153

Query: 176 DFLEKVIVKMFADR 189
             +   + +  AD+
Sbjct: 154 TDITSAVKRAIADK 167


>gi|302809605|ref|XP_002986495.1| hypothetical protein SELMODRAFT_425473 [Selaginella moellendorffii]
 gi|300145678|gb|EFJ12352.1| hypothetical protein SELMODRAFT_425473 [Selaginella moellendorffii]
          Length = 1453

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           P R ++L+GP GSGKS L    + K   +  +  A + +   +D  + 
Sbjct: 196 PGRTMLLLGPPGSGKSTLLRALAGKLDQSLKTTGAVTYNGHSLDEFEA 243


>gi|167391175|ref|XP_001739671.1| 26S protease regulatory subunit [Entamoeba dispar SAW760]
 gi|165896577|gb|EDR23943.1| 26S protease regulatory subunit, putative [Entamoeba dispar SAW760]
          Length = 410

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 188 PPKGVILYGPPGTGKTLLAKAVANETSATFLRIVGSELIQKYLGDGPKLVRE 239


>gi|95930182|ref|ZP_01312921.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684]
 gi|95133876|gb|EAT15536.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684]
          Length = 439

 Score = 40.9 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 27/157 (17%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSL------------DSILIDTRKPVL 112
           +I  GP G+GK+ LA + +   +SR   FS I   +            D  +  TR  + 
Sbjct: 52  LIFWGPPGTGKTTLAQVIAQSTRSRFVFFSAIMNGVKDIRHIVSRAKEDRSMYGTRTILF 111

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++I   + +    F       +    +L+ A T   S+ V    L SR   A V  +  
Sbjct: 112 VDEIHRFNKSQQDAFLP---ALEKGDLILIGATTENPSFEVNAA-LLSR---ARVFVLKP 164

Query: 173 PDDDFLEKVIVKMFAD-RQIF-----IDKKLAAYIVQ 203
              D +  ++ +  +D R +      + ++   ++ Q
Sbjct: 165 LQHDDIVLLLQRALSDPRGLADQKPDVSQEALDHLAQ 201


>gi|328870426|gb|EGG18800.1| cell division cycle protein 48 [Dictyostelium fasciculatum]
          Length = 798

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + ++L GP G GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 234 PPKGILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +      +++ A   P S    
Sbjct: 294 SPAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 353

Query: 155 L 155
           L
Sbjct: 354 L 354



 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS+ V+  GP G GK+ LA   + + ++   S
Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIASECQANFIS 538


>gi|315053797|ref|XP_003176273.1| hypothetical protein MGYG_00361 [Arthroderma gypseum CBS 118893]
 gi|311338119|gb|EFQ97321.1| hypothetical protein MGYG_00361 [Arthroderma gypseum CBS 118893]
          Length = 833

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 577 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLAS 616


>gi|302790365|ref|XP_002976950.1| hypothetical protein SELMODRAFT_106157 [Selaginella moellendorffii]
 gi|300155428|gb|EFJ22060.1| hypothetical protein SELMODRAFT_106157 [Selaginella moellendorffii]
          Length = 310

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 39/138 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID---------------- 106
           P + V+L GP G+GK+ L    + +S +  F     S++   ++                
Sbjct: 58  PCKGVLLYGPPGTGKTYLTKAVAAQSSANLFWLRGNSIEYKWLEDPKRMTRALFSIARRL 117

Query: 107 TRKPVLLEDIDLL----DFNDTQLFH---------IINSIHQYDSSLLMTAR-------- 145
               + L++ID +           F          +++ I +    +  T R        
Sbjct: 118 APSIIFLDEIDSIFAIQAGEAMTRFKSEFIYGWDRLMSGIAESVVVMAATCRPFHLDESV 177

Query: 146 --TFPVSWGVCLPDLCSR 161
              FP    V LPDL SR
Sbjct: 178 IQKFPKRLCVDLPDLSSR 195


>gi|312200584|ref|YP_004020645.1| ABC transporter [Frankia sp. EuI1c]
 gi|311231920|gb|ADP84775.1| ABC transporter related protein [Frankia sp. EuI1c]
          Length = 239

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           WP   V + GPSGSGKS L NI +   R+   S +        +   +   L    +   
Sbjct: 40  WPGEFVAVTGPSGSGKSTLLNIIAGLERADGGSVVVAGQSLAELSETRLARLRRRHVGMV 99

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTF 147
              Q FH++ S+   D+ +++ AR  
Sbjct: 100 --FQFFHLLESMTAADN-VVLAARLA 122


>gi|291295268|ref|YP_003506666.1| Holliday junction DNA helicase RuvB [Meiothermus ruber DSM 1279]
 gi|290470227|gb|ADD27646.1| Holliday junction DNA helicase RuvB [Meiothermus ruber DSM 1279]
          Length = 329

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 69/182 (37%), Gaps = 29/182 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117
           ++L GP G GK+ LA++ + +           +        ++ +  ++    + +++I 
Sbjct: 46  LLLFGPPGLGKTTLAHVVAYELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDILFIDEIH 105

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD----------------LCSR 161
            L     +  H+  ++  +   +++ A     +  + LP                 L SR
Sbjct: 106 RLSKAAEE--HLYPALEDFKIDIVIGAGPAARTLRLDLPRFTLIGATTRPGLISGPLRSR 163

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                +  +    +  L + + +      + I+ + A  I +R   ++  A++L  ++ +
Sbjct: 164 F--GIIEHLEFYTETELAQGVTRDAQLMGLAIEPEAALEIGRRSRGTMRIAKRLFRRVRD 221

Query: 222 LA 223
            A
Sbjct: 222 FA 223


>gi|227876234|ref|ZP_03994350.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC
           35243]
 gi|227843195|gb|EEJ53388.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC
           35243]
          Length = 765

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 43/196 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEMFVGMGASRVRDLFEQARNAAPAI 282

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++   +  + +L+ A   P      L
Sbjct: 283 IFVDEIDAVGRHRGTGMGGGHDEREQTLNQLLVEMDGFDERTNVILIAATNRPDVLDPAL 342

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD    E ++     ++ +  D  L A + +R       A
Sbjct: 343 ------LRPGRFDRQVAVEAPDIKGREAILTVHAKNKPLSKDTDLKA-LAKRTP-GFTGA 394

Query: 213 EKLVDKMDNLALSRGM 228
             L + ++  AL    
Sbjct: 395 -DLANVLNEAALLAAR 409


>gi|227499580|ref|ZP_03929687.1| crossover junction endoribonuclease subunit B [Anaerococcus
           tetradius ATCC 35098]
 gi|227218339|gb|EEI83593.1| crossover junction endoribonuclease subunit B [Anaerococcus
           tetradius ATCC 35098]
          Length = 335

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 52/202 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ L+ I +++           +++           L D D+L  +
Sbjct: 55  PLDHVLLQGPPGLGKTTLSTIIANELGVNLRVTSGPAIERPSDLASILTNLSDGDVLFID 114

Query: 123 DTQLFHIINSIHQY----------------------------DSSLLMTARTFPVSWGVC 154
           +    H IN   +                             D   L+ A T        
Sbjct: 115 EI---HRINRSVEEILYSAMEDFVLDIIVGKGPNAQSIRIDLDRFTLIGATTRAGMLSAP 171

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID--------------KKLAAY 200
           L D     +   ++ ++L D   L  ++ +      I ID               ++A  
Sbjct: 172 LRD-----RFGVLLALNLYDTKDLTTIVKRSAQILGIAIDEKGAVEIARRSRGTPRIANR 226

Query: 201 IVQRMERSLVFAEKLVDKMDNL 222
           +++R+ R      +  D++D  
Sbjct: 227 LLKRV-RDF-AIVRANDQIDYE 246


>gi|224283825|ref|ZP_03647147.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313140979|ref|ZP_07803172.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133489|gb|EFR51106.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB
           41171]
          Length = 697

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    ++        + +      + +  D    N  
Sbjct: 250 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 309

Query: 125 QL 126
            +
Sbjct: 310 AI 311


>gi|150397835|ref|YP_001328302.1| Holliday junction DNA helicase RuvB [Sinorhizobium medicae WSM419]
 gi|166231558|sp|A6UCT7|RUVB_SINMW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|150029350|gb|ABR61467.1| Holliday junction DNA helicase RuvB [Sinorhizobium medicae WSM419]
          Length = 346

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 43/264 (16%)

Query: 4   MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDD---LLVHSAIEQAVRLIDSWP 60
           M E      P+K+  D       Q           +R +    +  +        +D   
Sbjct: 1   MSEAARLIAPEKRGEDVDATLRPQ-TLDEFTGQAEARANLKIFIEAARNRG--EALDH-- 55

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
                 V+ VGP G GK+ LA I + +      S     +            LE+ D+L 
Sbjct: 56  ------VLFVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLF 109

Query: 121 FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAA 165
            ++    H +N   +        D  L +     P +  V + DL         +RL   
Sbjct: 110 IDEI---HRLNPAVEEILYPAMEDFQLDLIIGEGPSARSVKI-DLAKFTLVAATTRLGLL 165

Query: 166 TV---------VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
           T          V+++    + LE ++ +      + +  + A  I +R   +   A +L+
Sbjct: 166 TTPLRDRFGIPVRLNFYTVEELELIVRRGARLMGLGMTDEGAREIARRARGTPRIAGRLL 225

Query: 217 DKM-DNLALSRGMGITRSLAAEVL 239
            ++ D   ++R   +TR +A E L
Sbjct: 226 RRVRDFAEVARAEAVTRQIADEAL 249


>gi|19919956|ref|NP_612589.1| 42KDa protein [Beet soil-borne mosaic virus]
 gi|3136267|gb|AAC18570.1| 42KDa protein [beet soil-borne mosaic virus]
          Length = 382

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 47  SAIEQAVRL-----IDSWPSWPSRVVILVGPSGSGKS----CLANIWSDKSRSTRFSNIA 97
           +    A++L     +D    W +RV I++G  G GKS     + + +  + +      + 
Sbjct: 92  TCNAAAIKLDIVERLDVSSDWSARVGIVLGAPGVGKSTSIKHILDTYGSRYKMVLCLPVK 151

Query: 98  KSLDSILIDTRKPVLLEDI 116
           + LD +        L++DI
Sbjct: 152 QLLDGVFSGRMDTFLIDDI 170


>gi|19113502|ref|NP_596710.1| ribosome biogenesis factor recycling AAA family ATPase
           [Schizosaccharomyces pombe 972h-]
 gi|74676032|sp|O60058|AFG2_SCHPO RecName: Full=ATPase family gene 2 protein
 gi|3116137|emb|CAA18886.1| ribosome biogenesis factor recycling AAA family ATPase
           [Schizosaccharomyces pombe]
          Length = 809

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 48/210 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P R V+L GP G+GK+ +    + ++ +  F+                 L  I  D R  
Sbjct: 312 PPRGVLLYGPPGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAH 371

Query: 111 ----VLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID L    T+            L  +++ +      +++ A   P S    
Sbjct: 372 QPSIIFIDEIDALAPKRTEDVSEAESRAVATLLTLLDGMANAGKVVVIAATNRPNSIDEA 431

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMER 207
           L     RL+    ++I +PD      +I  + +       D Q+   + LA        R
Sbjct: 432 LRR-PGRLE--KEIEIGIPDKSARLDIIKLLLSGVPNEINDAQL---EDLA-------SR 478

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAE 237
           +  +    +  +   A  R +  T SL  +
Sbjct: 479 THAYVGADLAAVVREAALRAIKRTISLQKD 508


>gi|315042992|ref|XP_003170872.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893]
 gi|311344661|gb|EFR03864.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893]
          Length = 552

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95
                 LI+         +IL G +G+GK+ +A + +    S                  
Sbjct: 164 NGVLRGLIERDR---VPSMILWGSAGTGKTTVARVIASMVGSRFVEINSTSSGVAECKKL 220

Query: 96  IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            A++ + + +  RK ++  ++I     +   +F       +     L+ A T   S+ V 
Sbjct: 221 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 277

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208
              L SR        ++   ++ +  ++ +              +D +L  Y+    +  
Sbjct: 278 NA-LLSR---CRTFTLAKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGD 333

Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235
              A  L++  MD      +++      +TR+L 
Sbjct: 334 ARTALNLLELAMDLSQREGMTKDELKKSLTRTLV 367


>gi|302781891|ref|XP_002972719.1| hypothetical protein SELMODRAFT_267596 [Selaginella moellendorffii]
 gi|300159320|gb|EFJ25940.1| hypothetical protein SELMODRAFT_267596 [Selaginella moellendorffii]
          Length = 440

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P R  +L GP G+GKS LA   + ++ ST +S                 +A         
Sbjct: 166 PWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVANLFQMARDS 225

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    +     L++ A   P S  
Sbjct: 226 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYSLD 285

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 286 HAVRRRFDKRIYIPLPDLKAR 306


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040222|gb|ACT57018.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 66/208 (31%), Gaps = 54/208 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCI 243

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++     +  +L+ A   P      L
Sbjct: 244 VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAAL 303

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----- 207
                 L+       + +  PD    E +++     R + +   +    ++ + R     
Sbjct: 304 ------LRPGRFDRQITVPNPDIVGREHILMVH--SRNVPLAPNVI---LKTIARGTPGF 352

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLA 235
           S      LV   +  AL       R L 
Sbjct: 353 SGADLRNLV---NEAALMAARR-NRRLV 376


>gi|295664729|ref|XP_002792916.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01]
 gi|226278437|gb|EEH34003.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01]
          Length = 810

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 604 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 643


>gi|206590341|emb|CAQ37302.1| hypothetical transposase (partial sequence c terminus) protein
           [Ralstonia solanacearum MolK2]
          Length = 513

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 46/162 (28%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 317 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 371

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 372 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 429

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
              W     D                D      ++   FA R
Sbjct: 430 FTQWATAFAD----------------DQTLTAAMLDMAFASR 455


>gi|55378742|ref|YP_136592.1| cell division cycle protein 48 [Haloarcula marismortui ATCC 43049]
 gi|55231467|gb|AAV46886.1| cell division cycle protein 48 [Haloarcula marismortui ATCC 43049]
          Length = 695

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+LVG  G GK+ L    +    +T  S  A  L S+  D  +  L +       ++  +
Sbjct: 213 VLLVGAHGVGKTHLLQHVAWLVNATIHSVDAGRLLSLDQDGARAYLDDVARAAQGSERGI 272

Query: 127 FHI 129
            HI
Sbjct: 273 VHI 275


>gi|28867260|ref|NP_789879.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28867297|ref|NP_789916.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28867430|ref|NP_790049.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28867522|ref|NP_790141.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28868058|ref|NP_790677.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28868085|ref|NP_790704.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28868311|ref|NP_790930.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28868864|ref|NP_791483.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28869522|ref|NP_792141.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28869585|ref|NP_792204.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28869928|ref|NP_792547.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28870191|ref|NP_792810.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28870391|ref|NP_793010.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28870595|ref|NP_793214.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28870767|ref|NP_793386.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28871157|ref|NP_793776.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28871409|ref|NP_794028.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28871758|ref|NP_794377.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28871850|ref|NP_794469.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28871884|ref|NP_794503.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28872479|ref|NP_795098.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28872678|ref|NP_795297.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|29171580|ref|NP_808626.1| transposase/IS protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213972300|ref|ZP_03400363.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato T1]
 gi|28850494|gb|AAO53574.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28850531|gb|AAO53611.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28850664|gb|AAO53744.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28850757|gb|AAO53836.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851294|gb|AAO54372.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851321|gb|AAO54399.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851548|gb|AAO54625.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852103|gb|AAO55178.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852764|gb|AAO55836.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852827|gb|AAO55899.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853173|gb|AAO56242.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853437|gb|AAO56505.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853638|gb|AAO56705.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853843|gb|AAO56909.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854016|gb|AAO57081.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854407|gb|AAO57471.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854660|gb|AAO57723.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28855010|gb|AAO58072.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28855103|gb|AAO58164.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28855137|gb|AAO58198.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28855734|gb|AAO58793.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28855934|gb|AAO58992.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28856073|gb|AAO59129.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213922943|gb|EEB56575.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv.
           tomato T1]
 gi|330989790|gb|EGH87893.1| transposase/IS protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 269

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 25/114 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------------T 107
           ++ +GPSG GKS LA   + ++          +   +++                     
Sbjct: 104 IVFLGPSGVGKSHLAIALAYRAVMAGIKTRFVTAADLMLQLTAAHRQERLKEYFSRVVMA 163

Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVSWGVCLPD 157
              +++++I  L F  ++  LF   N +       SL++T+      W     D
Sbjct: 164 PGLLVIDEIGYLPFGRDEANLF--FNVVAKRYEQGSLILTSNLPFTQWAGTFAD 215


>gi|146276860|ref|YP_001167019.1| ATPase central domain-containing protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555101|gb|ABP69714.1| AAA ATPase, central domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 715

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 72/239 (30%), Gaps = 55/239 (23%)

Query: 46  HSAIEQAVRLIDSWPSWPS---------RVVILVGPSGSGKSCLANI------------- 83
             A++ A RL+     W           R ++L GP G+GK+ LA               
Sbjct: 294 GEALKAARRLVADLGLWQEKKLGWNELCRSLLLYGPPGTGKTWLARAMGNSADVGFVAAS 353

Query: 84  ---W-SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIIN-------- 131
              W +        + + KS           + +E+ID +        H  N        
Sbjct: 354 FAQWQAAGHLGDMLAAMRKSFADARRQAPSILFIEEIDAVGSRLDSDRHASNYRHQVIAG 413

Query: 132 -------SIHQYDSSLLMTA----RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                     +    ++       R  P        DL         V++ LPD+  L  
Sbjct: 414 FLETMDSLSREEGVIVVGACNYPERIDPAVLRAGRFDLK--------VEVPLPDEAILLG 465

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
           ++++    R  F D +L A     +  S    +  + +   LA      +  +    +L
Sbjct: 466 ILLRHL--RGTFTDTELRALAQDAVGCSAAEVDAAIRQARALAREEDRPLMLADIRALL 522


>gi|332027262|gb|EGI67346.1| Protein YME1-like protein [Acromyrmex echinatior]
          Length = 749

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D IL+    
Sbjct: 344 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGA 386


>gi|328869555|gb|EGG17933.1| 26S protease regulatory subunit S10B [Dictyostelium fasciculatum]
          Length = 393

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     V+ E
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIVDKYIGESARVIRE 221


>gi|322800491|gb|EFZ21495.1| hypothetical protein SINV_13651 [Solenopsis invicta]
          Length = 723

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D IL+    
Sbjct: 323 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGA 365


>gi|307214991|gb|EFN89836.1| Protein YME1-like protein [Harpegnathos saltator]
          Length = 776

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D IL+    
Sbjct: 359 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGA 401


>gi|307184045|gb|EFN70595.1| Protein YME1-like protein [Camponotus floridanus]
          Length = 753

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D IL+    
Sbjct: 336 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGA 378


>gi|300741372|ref|ZP_07071393.1| putative ATPase, AFG1 family protein [Rothia dentocariosa M567]
 gi|300380557|gb|EFJ77119.1| putative ATPase, AFG1 family protein [Rothia dentocariosa M567]
          Length = 350

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA++W               +     +        +   K V +++
Sbjct: 87  LYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSGYKLVCIDE 146

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
            +L D  DT L   ++  +      L+ T+ T P + G
Sbjct: 147 FELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALG 184


>gi|215500541|gb|EEC10035.1| werner helicase interacting protein, putative [Ixodes scapularis]
          Length = 400

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 65 RVVILVGPSGSGKSCLANIWSDK 87
            +IL GP G GK+ LA+I S K
Sbjct: 37 PSMILWGPPGCGKTTLAHIISQK 59


>gi|148652069|ref|YP_001279162.1| recombination factor protein RarA [Psychrobacter sp. PRwf-1]
 gi|148571153|gb|ABQ93212.1| Recombination protein MgsA [Psychrobacter sp. PRwf-1]
          Length = 439

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 29/187 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +IL G +G GK+ +A + +D                       +   S     +D   
Sbjct: 50  PSLILHGEAGIGKTTIAMLLADAVGRPFYPLSAINTGVKQLREVLDAGSSSGQGGLDFAS 109

Query: 110 PVL-LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           PV+ +++I   +      L        +     L+ A T   S+ V    L SR     V
Sbjct: 110 PVVFIDEIHRFNKAQQDALL----GAVESGDITLIGATTENPSFSVNNA-LLSR---CQV 161

Query: 168 VKISLPDDDFLEKVIVKMFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            ++   DD  + +++ +  +      Q+ ID +    I    +     A  L++     +
Sbjct: 162 YRLQPLDDTQIGELLQRALSQDEFLSQLSIDLQALPQIANLAQGDARKALNLLEMAVQAS 221

Query: 224 LSRGMGI 230
                 I
Sbjct: 222 DHSKQPI 228


>gi|71027749|ref|XP_763518.1| cell division cycle protein 48 [Theileria parva strain Muguga]
 gi|68350471|gb|EAN31235.1| cell division cycle protein 48, putative [Theileria parva]
          Length = 954

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P + VIL GP GSGK+ +A   ++++ +
Sbjct: 398 PPKGVILHGPPGSGKTLVARAIANETGA 425


>gi|314922407|gb|EFS86238.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL001PA1]
          Length = 717

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVRGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  DD  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367


>gi|311113454|ref|YP_003984676.1| ATP/GTP-binding protein [Rothia dentocariosa ATCC 17931]
 gi|310944948|gb|ADP41242.1| ATP/GTP-binding protein [Rothia dentocariosa ATCC 17931]
          Length = 350

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA++W               +     +        +   K V +++
Sbjct: 87  LYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSGYKLVCIDE 146

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
            +L D  DT L   ++  +      L+ T+ T P + G
Sbjct: 147 FELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALG 184


>gi|268608356|ref|ZP_06142083.1| hypothetical protein RflaF_02525 [Ruminococcus flavefaciens FD-1]
          Length = 606

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 58/195 (29%), Gaps = 49/195 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 199 ALLVGPPGTGKTLLAQAVAGEAEVPFFSISGSEFVEMFVGMGAAKVRDLFSQAVEKAPCI 258

Query: 111 VLLEDID--------LLDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID         +  ND       QL   ++        +++ A   P S      
Sbjct: 259 VFIDEIDTIGKKRDGQIGGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDPALL 318

Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
                     V LPDL  R +A   V   KI L D      +           +   +  
Sbjct: 319 RPGRFDRRIPVELPDLAGR-EAILNVHAQKIKLTDGIDFNAIARATAGASGAEL-ANIIN 376

Query: 200 YIVQRMERSLVFAEK 214
               R  R+   A  
Sbjct: 377 EAALRAVRNGRSAVD 391


>gi|241958488|ref|XP_002421963.1| 26S protease subunit, putative [Candida dubliniensis CD36]
 gi|223645308|emb|CAX39964.1| 26S protease subunit, putative [Candida dubliniensis CD36]
          Length = 429

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A ++    I     ++ E
Sbjct: 206 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 257


>gi|195145904|ref|XP_002013930.1| GL24409 [Drosophila persimilis]
 gi|194102873|gb|EDW24916.1| GL24409 [Drosophila persimilis]
          Length = 569

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 16/89 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E            
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE------------ 233

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCL 155
             +     ++    L+++ T    W   L
Sbjct: 234 --LFVMAREHAR--LLSSWTRSTRWLGSL 258


>gi|209884845|ref|YP_002288702.1| AAA ATPase, central region [Oligotropha carboxidovorans OM5]
 gi|209873041|gb|ACI92837.1| AAA ATPase, central region [Oligotropha carboxidovorans OM5]
          Length = 443

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 52/242 (21%)

Query: 9   SFFVPDKQKNDQPKN-----KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           + F     + D P+      +  QL     +   +  D             L     +  
Sbjct: 11  NLFAAAGLEQDAPRPLPERLRPRQLSDVVGQDHILGPDG-----------ALTRMLETRT 59

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
              ++  GP G+GK+ +A + +D +     + S +   +  +                  
Sbjct: 60  LGSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDTA----RARRETG 115

Query: 122 NDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATV 167
             T LF    H  N           +  + +L+  T              L SR   A V
Sbjct: 116 KGTLLFVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAA---LLSR---ARV 169

Query: 168 VKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           +     DD      I K++A       R + +D    A +V+  +     A  LV+++  
Sbjct: 170 LVFHSLDD----AAIEKLYARAEEIEGRPLPLDADARAVLVRMADGDGRAALTLVEEVWR 225

Query: 222 LA 223
            A
Sbjct: 226 AA 227


>gi|150396236|ref|YP_001326703.1| recombination factor protein RarA [Sinorhizobium medicae WSM419]
 gi|150027751|gb|ABR59868.1| AAA ATPase central domain protein [Sinorhizobium medicae WSM419]
          Length = 436

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + S ++     + S I   +  +              
Sbjct: 49  ASGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVIEDGTVILVGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D+  LE+++ +  A     + +D    A +++  +        L +++  
Sbjct: 160 -ARVLTFKPHDESSLEELLKRAEAAEGKSLPLDGDARASLIRMADGDGRAILTLAEEVWR 218

Query: 222 LA 223
            A
Sbjct: 219 AA 220


>gi|146298174|ref|YP_001192765.1| recombination factor protein RarA [Flavobacterium johnsoniae UW101]
 gi|146152592|gb|ABQ03446.1| AAA ATPase, central domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 425

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 29/149 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +I  GP G+GK+ LA I + +S+                      AK    +      
Sbjct: 40  PSLIFWGPPGTGKTTLAQIIAQESKRPFYELSAINSGVKDIRDVIEKAKQSGGLFTAKNP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L     +  +     L+ A T   S+ V +P L SR   + V 
Sbjct: 100 ILFIDEIHRFSKSQQDSLL----AAVEKGWITLIGATTENPSFEV-IPALLSR---SQVY 151

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            ++    D LE ++      R I IDK+L
Sbjct: 152 ILNAFTKDDLEALL-----HRAIKIDKEL 175


>gi|82750218|ref|YP_415959.1| cell division protein [Staphylococcus aureus RF122]
 gi|82655749|emb|CAI80148.1| cell division protein [Staphylococcus aureus RF122]
          Length = 697

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++ +   S        + +      + +  D    N
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFLSISGSDFVEMFVGVGASRVRDLFDNAKKN 256


>gi|17554264|ref|NP_499298.1| YME1-Like (Yeast Mitochondrial Escape) AAA protease family member
           (ymel-1) [Caenorhabditis elegans]
          Length = 676

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           V+LVGP G+GK+ LA   + +++   F       D +L+      + +  D  
Sbjct: 237 VLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKA 289


>gi|88808601|ref|ZP_01124111.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805]
 gi|88787589|gb|EAR18746.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805]
          Length = 637

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 45/204 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCL 276

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 277 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSAL 336

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       V +  PD      ++     ++++  D  L   I +R       A
Sbjct: 337 ------MRPGRFDRQVTVDAPDIKGRLSILEVHSRNKKLDPDLSL-DSIARRTP-GFTGA 388

Query: 213 EKLVDKMDNLAL--SRGMGITRSL 234
             L + ++  A+  +R    T SL
Sbjct: 389 -DLANLLNEAAILTARRRKETISL 411


>gi|116621115|ref|YP_823271.1| AAA ATPase [Candidatus Solibacter usitatus Ellin6076]
 gi|116224277|gb|ABJ82986.1| AAA ATPase [Candidatus Solibacter usitatus Ellin6076]
          Length = 252

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLA 81
           D +P  P   ++L+G  G+GK+ LA
Sbjct: 81  DEFPLGPYPGLLLIGEPGTGKTHLA 105


>gi|327400885|ref|YP_004341724.1| Proteasome-activating nucleotidase [Archaeoglobus veneficus SNP6]
 gi|327316393|gb|AEA47009.1| Proteasome-activating nucleotidase [Archaeoglobus veneficus SNP6]
          Length = 409

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +  +++T    +        I     ++ E
Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVAHHTQATFIRIVGSEFVQKYIGEGARLVRE 235


>gi|325189539|emb|CCA24026.1| vacuolar protein sortingassociating protein putative [Albugo
           laibachii Nc14]
          Length = 458

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R ++L GP G+GKS LA   + ++ ST F+  + +L
Sbjct: 154 PWRGILLYGPPGTGKSYLAKAVATEADSTFFAVSSATL 191


>gi|255638632|gb|ACU19621.1| unknown [Glycine max]
          Length = 259

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 45/137 (32%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   ++++ +     I   L    +     ++                 
Sbjct: 41  YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFF 100

Query: 114 EDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF----PVSW-- 151
           +++D +                  +  I+N +  +D+     +LM         P     
Sbjct: 101 DEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGTIKVLMATNRPDTLDPALLRP 160

Query: 152 -------GVCLPDLCSR 161
                     LPDL SR
Sbjct: 161 GRLDRKVEFGLPDLESR 177


>gi|219851454|ref|YP_002465886.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
 gi|219545713|gb|ACL16163.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
          Length = 806

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 39/166 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G+GK+ +A   +++  +   +                N+ +  +    +
Sbjct: 220 PPKGVLLYGPPGTGKTLIAKAVANEVDAHFITLSGPEIISKYYGESEGNLRQVFEEAQQN 279

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 280 APTIIFIDEIDSIAPKREDTKGEVERRVVAQLLALMDGLKGRGEVIVIAATNLPDALD-- 337

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +       ++I +PD +  E +       R + + + +
Sbjct: 338 -PALR---RGGRFDREIEIGIPDRNGREDIFKVHT--RGVPLAEDV 377


>gi|147676766|ref|YP_001210981.1| ATPase [Pelotomaculum thermopropionicum SI]
 gi|146272863|dbj|BAF58612.1| ATPase [Pelotomaculum thermopropionicum SI]
          Length = 638

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R VIL GP G+GK+ LA   + +  +   +    SL
Sbjct: 407 PPRGVILHGPPGTGKTLLARALASEINANFIAVKGPSL 444



 Score = 37.8 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P R V+L GP G+GK+ +A   + ++++                     L  I       
Sbjct: 134 PPRGVLLYGPPGTGKTLIARAVAGETKACFIHVNGPEIIHKYYGESEARLREIFQKAAGN 193

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + L++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 194 RPSIIFLDEIDAVAPKREEVTGEVEKRVVAQLLALMDGLKSRGQVIVIGATNLPNAIDPA 253

Query: 155 L 155
           L
Sbjct: 254 L 254


>gi|126731706|ref|ZP_01747511.1| putative acetoin catabolism regulatory protein [Sagittula stellata
           E-37]
 gi|126707872|gb|EBA06933.1| putative acetoin catabolism regulatory protein [Sagittula stellata
           E-37]
          Length = 594

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 18/151 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNI---AKSLDSILIDTRKPVLLEDIDLLD-FN 122
           ++L G SG+GK  LA        +  F  +     + D++       + L  ID LD   
Sbjct: 365 LLLTGESGTGKERLARAIHMSGPARAFHAVRCAGAAFDTLEDAAPGTLFLRGIDDLDSKA 424

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC---LPDLCSRLKAATVVKISLP------ 173
              L  +I    + D  ++ +AR    +         DL  RL  A   ++ LP      
Sbjct: 425 QAALLTLI--ERREDLRVIASARMPLATRLAEGSFRDDLYYRLSGA---RLDLPPLRLRH 479

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           D D+L   +++ FA   + +  +  A ++ R
Sbjct: 480 DTDWLIDRLMRPFAADGMRLSPQARAELLAR 510


>gi|119952443|ref|YP_949925.1| transposase [Arthrobacter aurescens TC1]
 gi|119951573|gb|ABM10483.1| IS21 family element, transposase istB [Arthrobacter aurescens TC1]
          Length = 267

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 47/152 (30%)

Query: 30  FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           F F    G+ RD        D +V                     V+ +GP G+GK+ LA
Sbjct: 86  FDFDHARGLKRDLIAHLGTLDFVVAREN-----------------VVFLGPPGTGKTHLA 128

Query: 82  ---NIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND 123
               I + ++        A    + L +                   ++++++  + F  
Sbjct: 129 IGLAIRACQAGHRVLFATASEWVARLAEAHHAGRLHDELVRLGRYPLLVVDEVGYIPFEP 188

Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                 F ++ S     +SL++T+      WG
Sbjct: 189 EAANLFFQLV-SSRYERASLIVTSNKPFGRWG 219


>gi|111024084|ref|YP_707056.1| recombination factor protein RarA [Rhodococcus jostii RHA1]
 gi|110823614|gb|ABG98898.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Rhodococcus jostii RHA1]
          Length = 478

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 23/154 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA++ S  +   RF  ++ +L + + + R  + L    LL    T L
Sbjct: 82  VLLYGPPGTGKTTLASLISGATG-RRFEALS-ALSAGVKEVRGVIELARRRLLAGEQTVL 139

Query: 127 F----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  +        +  +    LL+ A T   S+ V  P L SR   + V+++    
Sbjct: 140 FIDEVHRFSKTQQDALLAAVENRIVLLVAATTENPSFSVVSP-LLSR---SLVLQLQSLT 195

Query: 175 DDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203
            D +E ++ +   D R +     I      ++V+
Sbjct: 196 ADDIENLLERARTDERGLGGEIEIAGDAMDHLVR 229


>gi|19746896|ref|NP_608032.1| recombination factor protein RarA [Streptococcus pyogenes MGAS8232]
 gi|94995187|ref|YP_603285.1| recombination factor protein RarA [Streptococcus pyogenes
           MGAS10750]
 gi|19749141|gb|AAL98531.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|94548695|gb|ABF38741.1| ATPase, AAA family [Streptococcus pyogenes MGAS10750]
          Length = 422

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +R               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                + +++M   T    +    P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++  I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|318605179|emb|CBY26677.1| ISPsy4, transposition helper protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 241

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 21/107 (19%)

Query: 65  RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK----------- 109
           R +I VG  G+GK+ LA       +      RF N+   ++ + +D              
Sbjct: 99  RNIIFVGGPGTGKTHLATALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 158

Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
              ++L+D+  L F+      LFH+I+ +H++ +S+++T       W
Sbjct: 159 LDLIVLDDLGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 204


>gi|308234464|ref|ZP_07665201.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829]
 gi|328944311|ref|ZP_08241775.1| cell division protein FtsH [Atopobium vaginae DSM 15829]
 gi|327491230|gb|EGF23005.1| cell division protein FtsH [Atopobium vaginae DSM 15829]
          Length = 635

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 62/241 (25%)

Query: 47  SAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
            ++ + V  +D+   + +      +  +LVGP G+GK+ LA   + +++   F       
Sbjct: 194 DSLREIVSFLDNPKKYAAIGARCPKGALLVGPPGTGKTLLARAVAGEAKVPFFQISGSEF 253

Query: 101 DSILIDTRKP----------------VLLEDIDLLDF---------ND-----TQLFHII 130
             + +                     + ++++D +           ++      QL   +
Sbjct: 254 VEMFVGRGAAKVRDLFKQAKEKAPCIIFIDELDTVGKKRGVSVNSNDEREQTLNQLLAEM 313

Query: 131 NSIHQYDSSLLMTARTFPVSW--------------GVCLPDLCSRLKAATVVKISLPDDD 176
           +    +   +++ A   P +                V LPDL  R     ++K+   D  
Sbjct: 314 DGFDNHKGIVVLAATNRPETLDLALLRPGRFDRRIPVELPDLTGR---EAILKLHASD-V 369

Query: 177 FLEKVIVKMFADRQI--FIDKKLAAYI------VQRMERSLVFAEKLVDKMDNLALSRGM 228
            +E+ I      RQ        LA  I        RM RS V    + + +D +      
Sbjct: 370 KMEQGIDFAQVARQTPGTSGADLANMINEAALRAVRMGRSRVSQSDIEESVDVVVAGEKK 429

Query: 229 G 229
            
Sbjct: 430 K 430


>gi|242782157|ref|XP_002479944.1| proteasome regulatory particle subunit Rpt5, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218720091|gb|EED19510.1| proteasome regulatory particle subunit Rpt5, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 466

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 252 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 311

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 312 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 369

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++  D  +
Sbjct: 370 RSGRLD--RKIEFPLPNEEARAQILQ--IHSRKMTTDDGV 405


>gi|212537357|ref|XP_002148834.1| mitochondrial AAA ATPase, putative [Penicillium marneffei ATCC
           18224]
 gi|210068576|gb|EEA22667.1| mitochondrial AAA ATPase, putative [Penicillium marneffei ATCC
           18224]
          Length = 1415

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             ++L GP G+GK+ LA   + +S +T        +  + +   +
Sbjct: 707 PGMLLYGPPGTGKTLLAKAVARESGATVLEVSGSDIYDMYVGEGE 751


>gi|47087311|ref|NP_998649.1| nuclear valosin-containing protein-like [Danio rerio]
 gi|27881916|gb|AAH44464.1| Nuclear VCP-like [Danio rerio]
          Length = 796

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R  +L GP G GK+ LA   + ++        A  L                +  +  
Sbjct: 259 PPRGFLLHGPPGCGKTLLAQAVAGETALPLLKISAPELVSGVSGESEQKLRELFEQAISS 318

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   NS+ +    L++ A   P S 
Sbjct: 319 APCILFIDEIDAITPKRETASKDMERRIVAQLLTCMDDLNSMLEPAQVLVIGATNRPDSL 378

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+    K++  +   R+I +   
Sbjct: 379 DPALR------RAGRFDREICLGIPDEGARMKILKTLC--RKIRLPDD 418



 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   ++ S     S     L ++ +   +  +
Sbjct: 557 LLLAGPPGCGKTLLAKAVANASGLNFISVKGPELLNMYVGESERAV 602


>gi|77459806|ref|YP_349313.1| recombination factor protein RarA [Pseudomonas fluorescens Pf0-1]
 gi|77383809|gb|ABA75322.1| conserevd hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 441

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 30/187 (16%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + ++ S +   +  A       I     +  +  
Sbjct: 41  EALEQGALHSMIFWGPPGVGKTTLARLLAEVSDAHFETVSAVLAGVKEIRQAVEIAKQQA 100

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 101 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 155

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R + +  +    ++   +       +L+
Sbjct: 156 --ARVYVLKSLDEAALRKLVHRALTEERGLGKRHLTLSDEGFQMLLSAAD---GDGRRLL 210

Query: 217 DKMDNLA 223
           + ++N +
Sbjct: 211 NLLENAS 217


>gi|328955416|ref|YP_004372749.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2]
 gi|328455740|gb|AEB06934.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2]
          Length = 651

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 45/142 (31%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R  +LVGP G+GK+ +A   + ++    FS        + +                   
Sbjct: 215 RGALLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEMFVGRGAAKVRDLFKQANEKAP 274

Query: 111 --VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW-- 151
             V +++ID +           ND       QL   ++    +   +++ A   P +   
Sbjct: 275 CIVFIDEIDTIGKRRDGGGISGNDEREQTLNQLLTEMDGFDNHKGIVVIAATNRPDTLDP 334

Query: 152 ------------GVCLPDLCSR 161
                        V LPDL  R
Sbjct: 335 ALLRPGRFDRRIPVELPDLAGR 356


>gi|300710281|ref|YP_003736095.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
 gi|299123964|gb|ADJ14303.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
          Length = 387

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  +L   +
Sbjct: 166 PPGGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVQKFIGEGSRLVRDLFELAREH 225

Query: 123 DTQL 126
           +  +
Sbjct: 226 EPAI 229


>gi|302501127|ref|XP_003012556.1| hypothetical protein ARB_01169 [Arthroderma benhamiae CBS 112371]
 gi|291176115|gb|EFE31916.1| hypothetical protein ARB_01169 [Arthroderma benhamiae CBS 112371]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + +++ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIVF 229


>gi|288555343|ref|YP_003427278.1| Holliday junction DNA helicase RuvB [Bacillus pseudofirmus OF4]
 gi|288546503|gb|ADC50386.1| Holliday junction DNA helicase RuvB [Bacillus pseudofirmus OF4]
          Length = 333

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 31/191 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L+ I + +      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLSGIIASEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPDDD-F 177
            H +N + +    +L      P     CL       P   S RL       +        
Sbjct: 114 -HRLNRMVEE---VLY-----PAMEDFCLDIVIGKGPTARSVRLDLPPFTLVGATTRAGM 164

Query: 178 LEKVIVKMF--ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA---LSRGMGITR 232
           L   +   F    R  +  +   A+IV+R         +   ++D+ A   ++R    T 
Sbjct: 165 LSAPLRDRFGVMARLEYYTEAELAFIVKRT----ASIFET--ELDDEAALEIARRSRGTP 218

Query: 233 SLAAEVLKETQ 243
            +A  +L+  +
Sbjct: 219 RIANRLLRRVR 229


>gi|258542798|ref|YP_003188231.1| recombination factor protein RarA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633876|dbj|BAH99851.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636935|dbj|BAI02904.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639988|dbj|BAI05950.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643044|dbj|BAI08999.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646099|dbj|BAI12047.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649152|dbj|BAI15093.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652139|dbj|BAI18073.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655196|dbj|BAI21123.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-12]
          Length = 453

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 66/203 (32%), Gaps = 49/203 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILIDTRKPVLL 113
           +IL G  G GK+ +A + +  +              +        +     I     + +
Sbjct: 76  LILWGGPGVGKTTIARLLAQAAGLKFVQLSAVFSGVADLKKAFENARRQAEIGGGTLLFV 135

Query: 114 EDIDLLDFNDTQLFHIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163
           ++I           H  N   Q          ++++   T      +       L SR  
Sbjct: 136 DEI-----------HRFNRAQQDGFLPVVEDGTVVLVGATTENPSFALNSA---LLSR-- 179

Query: 164 AATVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
              V+ ++  DD   E ++V+   +  R + + +     +    +    +   +V+++  
Sbjct: 180 -CQVMVLNRLDDPACEALLVRAEEETGRPLPLTEDGRVTLRAMADGDGRYLLNMVEQL-- 236

Query: 222 LALSRGMG-----ITRSLAAEVL 239
           L+L          ++R LA   +
Sbjct: 237 LSLKTEKPLDAQALSRLLAKRAI 259


>gi|291615033|ref|YP_003525190.1| ATPase AAA [Sideroxydans lithotrophicus ES-1]
 gi|291585145|gb|ADE12803.1| AAA ATPase central domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 437

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 23/186 (12%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           ++ S     +IL GP G GK+ LA + +    +  F  ++  L  +          E   
Sbjct: 42  AFQSGKLHSMILWGPPGVGKTTLARLMASAFDAE-FVPLSAVLSGVKDIREAIAQAEATL 100

Query: 118 LLDFNDTQLF----HIINSIHQYD----------SSLLMTARTFPVSWGVCLPDLCSRLK 163
                 T LF    H  N   Q            + +  T              L SR  
Sbjct: 101 QQSGRHTILFVDEVHRFNKSQQDAFLPFVEQGLVTFIGATTENPSFELNNA---LLSR-- 155

Query: 164 AATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V  +    +  + ++  +    A + +  D      ++   +        +++++  
Sbjct: 156 -AQVYVLQSLSEAEMGQLFERAQQVALQGLEFDAAAKERVIGYADGDARRLLNVLEQLQT 214

Query: 222 LALSRG 227
            A +  
Sbjct: 215 AAQAAK 220


>gi|207722722|ref|YP_002253158.1| transposition helper protein [Ralstonia solanacearum MolK2]
 gi|206587904|emb|CAQ18486.1| putative transposition helper protein [Ralstonia solanacearum
           MolK2]
          Length = 476

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 46/162 (28%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 93  ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 147

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 148 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 205

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
              W     D                D      ++   FA R
Sbjct: 206 FTQWATAFAD----------------DQTLTAAMLDMAFASR 231


>gi|161485713|ref|NP_642336.2| recombination factor protein RarA [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 457

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +  + +  F  I+  L  +    +  VL E           +
Sbjct: 62  MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLPDVRQ--VLAEAAQRFAGGRRTV 118

Query: 127 F-----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
                 H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 175

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     A+R +      + +     I    +  +  A  L++    LA 
Sbjct: 176 PQDIVEALQRAL---RDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA 232

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 233 GEGGEITPQTLLQVLADRTR 252


>gi|54298649|ref|YP_125018.1| hypothetical protein lpp2713 [Legionella pneumophila str. Paris]
 gi|53752434|emb|CAH13866.1| hypothetical protein lpp2713 [Legionella pneumophila str. Paris]
          Length = 360

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 27/122 (22%)

Query: 57  DSWPSW----PSRVVILVGPSGSGKSCLA-----------------NIWSDKSRS--TRF 93
           DSW  W    P + + + GP G GK+ L                  + +  +  +   R 
Sbjct: 41  DSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRL 100

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----LFHIINSIHQYDSSLLMTARTFPV 149
                 L  I  +  K + L   D    +D      L  ++ ++H Y   L++++ T P 
Sbjct: 101 QGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTPPD 160

Query: 150 SW 151
             
Sbjct: 161 EL 162


>gi|18416240|ref|NP_567691.1| FtsH protease, putative [Arabidopsis thaliana]
 gi|2262118|gb|AAB63626.1| cell division protein isolog [Arabidopsis thaliana]
 gi|4972098|emb|CAB43894.1| cell division protein-like [Arabidopsis thaliana]
 gi|7269243|emb|CAB81312.1| cell division protein-like [Arabidopsis thaliana]
 gi|332659430|gb|AEE84830.1| FtsH extracellular protease [Arabidopsis thaliana]
          Length = 946

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 21/100 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P   V+L GP G GK+ +A   + ++    +         +L+                 
Sbjct: 462 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN 521

Query: 111 ----VLLEDIDLLDFNDTQLF-----HIINSIHQYDSSLL 141
               + +++ID L      +F      + N+  Q   + L
Sbjct: 522 KPSVIFIDEIDALATRRQGIFKENSDQLYNAATQERETTL 561


>gi|325273411|ref|ZP_08139666.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
 gi|324101456|gb|EGB99047.1| recombination factor protein RarA [Pseudomonas sp. TJI-51]
          Length = 441

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 22/150 (14%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +    +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +LL    T              L SR 
Sbjct: 99  AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMF-ADRQI 191
             A V  +   D+  L K++ +    DR +
Sbjct: 155 --ARVYVLKSLDEAALRKLVDRALTEDRGL 182


>gi|312864415|ref|ZP_07724648.1| recombination factor protein RarA [Streptococcus downei F0415]
 gi|311100136|gb|EFQ58347.1| recombination factor protein RarA [Streptococcus downei F0415]
          Length = 426

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 62/176 (35%), Gaps = 25/176 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  ++               + +  +         ++L++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDSKKRLQEIAEEAKFSGGLVLMLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++     D 
Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSPDD 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           ++  + +  +D  R     I +D     +I              ++ ++   LS  
Sbjct: 155 IKTALKRAISDKERGFDFDIKLDDDALDFIATATN---GDLRSALNSLELAVLSTQ 207


>gi|293363752|ref|ZP_06610494.1| Holliday junction DNA helicase RuvB [Mycoplasma alligatoris A21JP2]
 gi|292552673|gb|EFF41441.1| Holliday junction DNA helicase RuvB [Mycoplasma alligatoris A21JP2]
          Length = 314

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 79/191 (41%), Gaps = 34/191 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSLDSILI----DTRKPVLLEDIDL 118
           ++L GP G+GK+ LA I +   +S     + SNI K  D I I    +    + ++++  
Sbjct: 40  ILLYGPPGTGKTSLAGIIASAQKSFIHYVQASNIEKKSDLISIFSTLNQGDILFIDEVHS 99

Query: 119 LDFNDTQLFHIINSI-----------HQYDSSL--------LMTARTFPVSWGVCLPDLC 159
           L+    +L  + N++                ++        L+ A T   +    L D  
Sbjct: 100 LNKMIEEL--LYNAMEDFVFDVIIGTEDNAKTMRMKIKPFTLIAATTKINNISQPLKD-- 155

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
              +   V K+   +D  L K++    +  ++ + +  A YIV    ++   A  L+ ++
Sbjct: 156 ---RFGLVGKMHNYEDSELVKILKNSASILKLDLGQSEAEYIVSFSRQTPRIANNLLKRV 212

Query: 220 DNLALSRGMGI 230
           ++  +++   I
Sbjct: 213 NDFKIAKNKEI 223


>gi|302661876|ref|XP_003022599.1| hypothetical protein TRV_03256 [Trichophyton verrucosum HKI 0517]
 gi|291186555|gb|EFE41981.1| hypothetical protein TRV_03256 [Trichophyton verrucosum HKI 0517]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + +++ST FS  +  L S  +   + ++          
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLV---------- 213

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N   +   +++ 
Sbjct: 214 -KQLF---NMARENKPAIVF 229


>gi|290995721|ref|XP_002680431.1| predicted protein [Naegleria gruberi]
 gi|284094052|gb|EFC47687.1| predicted protein [Naegleria gruberi]
          Length = 668

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 50/185 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             + + LVGPSGSGKS                 I   L+      +  + ++ +D+ + +
Sbjct: 420 SGQTIALVGPSGSGKS----------------TIVGLLERFYTPNKGNITIDGVDVSELD 463

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
              L H           +L                    +K      +  PD+D      
Sbjct: 464 PMWL-HRHCLGIVSQEPVLFAGS----------------IKYNIAYALLGPDEDM----- 501

Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL------ALSRGMGITRSLAA 236
                +R   +  +    + +R   +  F  +L DK D L      +LS G     ++A 
Sbjct: 502 -----NRFTSVSMEQIESVAKRAN-AHNFIMELPDKYDTLLGEKGVSLSGGQKQRIAIAR 555

Query: 237 EVLKE 241
            +L++
Sbjct: 556 ALLQD 560


>gi|308235710|ref|ZP_07666447.1| Holliday junction DNA helicase RuvB [Gardnerella vaginalis ATCC
           14018]
 gi|311114740|ref|YP_003985961.1| crossover junction ATP-dependent DNA helicase RuvB [Gardnerella
           vaginalis ATCC 14019]
 gi|310946234|gb|ADP38938.1| crossover junction ATP-dependent DNA helicase RuvB [Gardnerella
           vaginalis ATCC 14019]
          Length = 353

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 76/219 (34%), Gaps = 35/219 (15%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDS 102
            A RL D  P      ++L GP G GK+ LA I +++        S          +   
Sbjct: 62  DAARLRDVPPD----HMLLAGPPGLGKTTLAMIVANELGVSIRVTSGPAIQHAGDLASIL 117

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD---- 157
             +DT + + +++I  L     +L +I     +     +M  +     S  + LP     
Sbjct: 118 SSLDTGEVLFIDEIHRLPRAAEELLYI---AMEDFRVDVMVGKGPGASSIPLTLPHFTVV 174

Query: 158 ------------LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
                       L +R      +     D+  LEK+I +      + +  + A  +  R 
Sbjct: 175 GATTREGMLPSPLRARFGFTAHLDFYPHDE--LEKLIERSSVLLGVHLVDQAAKELAIRS 232

Query: 206 ERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKETQ 243
             +   A +L+ ++ D   +     + R    E L   Q
Sbjct: 233 RGTPRIANRLLRRVRDWAVVHNLKDVNRESVIEALSLYQ 271


>gi|195326985|ref|XP_002030203.1| GM25309 [Drosophila sechellia]
 gi|194119146|gb|EDW41189.1| GM25309 [Drosophila sechellia]
          Length = 398

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E
Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE 226


>gi|149188544|ref|ZP_01866837.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Vibrio shilonii AK1]
 gi|148837762|gb|EDL54706.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Vibrio shilonii AK1]
          Length = 244

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 38/126 (30%)

Query: 64  SRVVILVGPSGSGKSCLANI-------------WSDKSRSTRF-------SNIAKSLDSI 103
             +  LVG +GSGKS LA I             W ++ RS  F       S++++S+  +
Sbjct: 29  EGITALVGKNGSGKSHLAQILAKLTPPSEGRVEWGNQIRSVGFYSQLESESDLSQSIAQL 88

Query: 104 LIDTRKPVLLEDI----------DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
           L    K + LE I          D++  ++       +   Q    L  T    P    +
Sbjct: 89  LGVENKLLALERIQQGDCSSHWFDMIADDE------WDLAEQLARRL--TQLRLPTDLNI 140

Query: 154 CLPDLC 159
            L  L 
Sbjct: 141 KLAQLS 146


>gi|56419319|ref|YP_146637.1| hypothetical protein GK0784 [Geobacillus kaustophilus HTA426]
 gi|261417821|ref|YP_003251503.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61]
 gi|319767369|ref|YP_004132870.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52]
 gi|56379161|dbj|BAD75069.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261374278|gb|ACX77021.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61]
 gi|317112235|gb|ADU94727.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52]
          Length = 250

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 67  VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVL------LEDI 116
           V+L+G  G+GK+ LA         +    RF  +A  +  +    +   L      L+  
Sbjct: 96  VLLLGSPGTGKTHLATALGIQACQQGHEVRFFRVADLVAQLEEALKNGTLGRLKRSLDPC 155

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           +LL  ++             LFHII   ++   S+++T+      W     D  +RL AA
Sbjct: 156 ELLILDELGYVPFQKQGSELLFHIIADCYER-KSVMVTSNLEFGQWNRVFGD--NRLTAA 212

Query: 166 TVVKI 170
            V ++
Sbjct: 213 LVDRL 217


>gi|13541778|ref|NP_111466.1| ATPase of the AAA+ class involved in cell division [Thermoplasma
           volcanium GSS1]
 gi|14325192|dbj|BAB60117.1| cell cycle control protein 48 [Thermoplasma volcanium GSS1]
          Length = 745

 Score = 40.5 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS+  +L GP G GK+ LA   + +S +   S
Sbjct: 500 PSKGFLLYGPPGVGKTLLAKAVATESNANFIS 531



 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + VIL GP G+GK+ +A   +++S +   S
Sbjct: 223 PPKGVILYGPPGTGKTLIARAVANESGANFLS 254


>gi|281344564|gb|EFB20148.1| hypothetical protein PANDA_019466 [Ailuropoda melanoleuca]
          Length = 389

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|271500827|ref|YP_003333852.1| AAA ATPase central domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344382|gb|ACZ77147.1| AAA ATPase central domain protein [Dickeya dadantii Ech586]
          Length = 447

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA +     ++   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAELIGHYGQADVERISAVTSGIKEIREAIERA----RQNRDAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRM----ERSLVFAEKLVDKM 219
                D +E+V+++   D+       QI +  +    + + +     RSL   E + D  
Sbjct: 163 KALSVDDIEQVLLQALQDKERGLGEQQIVLPDETRRLLAELVNGDARRSLNLLEMMADMA 222

Query: 220 DNLALSRGMGITRSLAAEV 238
           +  A +    +T  L  EV
Sbjct: 223 EVDA-TGRRLLTLELLKEV 240


>gi|313125585|ref|YP_004035849.1| ATPase AAA [Halogeometricum borinquense DSM 11551]
 gi|312291950|gb|ADQ66410.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM
           11551]
          Length = 741

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEE 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ +      +++ A     S    
Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLETRGQVIVIAATNRVDS---V 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD+   ++++      R + +   +
Sbjct: 339 DPALRRPGRFDREIEIGVPDESGRKEILQ--IHTRGMPLSDDV 379



 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ +A   ++++ +   S
Sbjct: 495 PPKGVLLYGPPGTGKTLIAKAVANETNANFIS 526


>gi|212224536|ref|YP_002307772.1| proteasome-activating nucleotidase [Thermococcus onnurineus NA1]
 gi|226723242|sp|B6YXR2|PAN_THEON RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|212009493|gb|ACJ16875.1| proteasome-activating nucleotidase [Thermococcus onnurineus NA1]
          Length = 398

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ +A   + +  +T    +   L    I     ++ E
Sbjct: 172 PPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHE 223


>gi|195589664|ref|XP_002084570.1| GD14340 [Drosophila simulans]
 gi|194196579|gb|EDX10155.1| GD14340 [Drosophila simulans]
          Length = 398

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E
Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE 226


>gi|24663015|ref|NP_648525.1| Rpt4R [Drosophila melanogaster]
 gi|7294649|gb|AAF49987.1| Rpt4R [Drosophila melanogaster]
 gi|19527781|gb|AAL90005.1| AT06668p [Drosophila melanogaster]
 gi|220960210|gb|ACL92641.1| CG7257-PA [synthetic construct]
          Length = 398

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E
Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE 226


>gi|303241541|ref|ZP_07328042.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2]
 gi|302590959|gb|EFL60706.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2]
          Length = 430

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 20/108 (18%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TR 92
             ++D +V S  +   R+I +        VIL GP G+GK+ LA I ++ +++       
Sbjct: 21  FGQED-IVGSG-KLLYRMIKADR---ITSVILYGPPGTGKTSLARIIANTTKANFEKLNA 75

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIHQY 136
            +     +  I+ DTR  +L           T LF    H  N   Q 
Sbjct: 76  VTAGVSDIKRIVADTRNQIL------NPSQKTVLFVDEIHRFNKAQQD 117


>gi|296394109|ref|YP_003658993.1| ATPase AAA [Segniliparus rotundus DSM 44985]
 gi|296181256|gb|ADG98162.1| AAA ATPase central domain protein [Segniliparus rotundus DSM 44985]
          Length = 479

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 22/136 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD-------------SILIDTRKPVLL 113
           V+L GP G+GK+ +A++ S  +     +  A +                +    R  + +
Sbjct: 78  VVLHGPPGTGKTTIASLLSAATGREFVALSALTAGVKEVREVIEDSRMRLAAGRRTVLFI 137

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  ++   LL+ A T    + V  P L SR   + V+++  
Sbjct: 138 DEVHRFSKTQQDALL----AAVEHQIVLLVAATTENPGFAVVSP-LLSR---SLVLELRP 189

Query: 173 PDDDFLEKVIVKMFAD 188
              + L+ +I +   D
Sbjct: 190 LAREDLDALISRALED 205


>gi|225678278|gb|EEH16562.1| cdcH [Paracoccidioides brasiliensis Pb03]
          Length = 801

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 575 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 620



 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  +  
Sbjct: 261 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEA 317


>gi|145361024|ref|NP_182074.4| ATP binding / nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|330255468|gb|AEC10562.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
          Length = 491

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S++T F+  A SL S  +   + ++
Sbjct: 252 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLV 301


>gi|221068782|ref|ZP_03544887.1| AAA ATPase central domain protein [Comamonas testosteroni KF-1]
 gi|220713805|gb|EED69173.1| AAA ATPase central domain protein [Comamonas testosteroni KF-1]
          Length = 446

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 69/175 (39%), Gaps = 26/175 (14%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112
           IL GP G GK+ +A + +D   +   S                 A++  S L+  R  V 
Sbjct: 55  ILWGPPGVGKTTIARLMADAFDAQFISISAVLGGVKDIREAVEQAQAARSGLLQQRTIVF 114

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR   A V  +  
Sbjct: 115 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQS 167

Query: 173 PDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
              D L++++ K    + +  I+ +    ++   +     A +L++ ++ L+++ 
Sbjct: 168 LTTDDLKQIVAKAQVIKAVPTIEDEALDRLIAYAD---GDARRLLNTLETLSITA 219


>gi|15895552|ref|NP_348901.1| Holliday junction DNA helicase RuvB [Clostridium acetobutylicum
           ATCC 824]
 gi|20140171|sp|Q97GT1|RUVB_CLOAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15025289|gb|AAK80241.1|AE007729_8 Holliday junction specific DNA helicase, subunit ruvB [Clostridium
           acetobutylicum ATCC 824]
 gi|325509701|gb|ADZ21337.1| Holliday junction DNA helicase B [Clostridium acetobutylicum EA
           2018]
          Length = 349

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 31/206 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+  GP G GK+ LANI + +           +++           L + D+L  ++   
Sbjct: 55  VLFYGPPGLGKTTLANIIAKEMGGNLKVTSGPAIERAGDLAAILTGLSEYDVLFIDEI-- 112

Query: 127 FHIINSIHQ-------YDSSL-LMTAR-TFPVSWGVCLPD----------------LCSR 161
            H +N   +        D +L ++  +     S  + LP                 L  R
Sbjct: 113 -HRLNRSVEEILYPAMEDYALDIIIGKGAAAKSIRLDLPKFTLIGATTRVGLLTAPLRDR 171

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                +  +   +D+ L+++IV+  +   I ID+  A  I  R   +   A +L+ ++ +
Sbjct: 172 F--GVLCPMEFYNDEELKEIIVRSSSILDIDIDEDAALEIAMRSRGTPRIANRLLKRVRD 229

Query: 222 LALSRGMGI-TRSLAAEVLKETQQCD 246
            A  +G GI     A + L   +  D
Sbjct: 230 YADVKGRGIVNLDSAKKALNLLEVDD 255


>gi|159116983|ref|XP_001708712.1| P60 katanin [Giardia lamblia ATCC 50803]
 gi|157436825|gb|EDO81038.1| P60 katanin [Giardia lamblia ATCC 50803]
          Length = 501

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 52/188 (27%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILI 105
           WP+  ++L GP+G+GK+ +A+  + ++    F+     + S                   
Sbjct: 245 WPTTGLLLYGPAGTGKTLIASSVATQAGYNFFNVAISDIVSKWKGEAVLCVRALYTIARA 304

Query: 106 DTRKPVLLEDIDLL------DFNDTQL------------F-HIINSIHQYD-----SSLL 141
                V +++ID L        ++T +            F H I+   + D      SL+
Sbjct: 305 CAPSVVFIDEIDALVCGDSRTTDETSVQIRTELQTQLDGFQHKISDSIEGDLSFNPESLV 364

Query: 142 MT--ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA-DRQIFIDKKL- 197
           +T  A  FP  W +  P L    +    V I LPD+  +++++      DRQ   D  + 
Sbjct: 365 ITIGATNFP--WKLDGPILR---RFTNRVYIGLPDEATVKELLTMCVDFDRQ---DPDVT 416

Query: 198 AAYIVQRM 205
             +++ R+
Sbjct: 417 IDWLIPRL 424


>gi|332374594|gb|AEE62438.1| unknown [Dendroctonus ponderosae]
          Length = 392

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 220

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 221 ------MFNYAKDHQ 229


>gi|330955484|gb|EGH55744.1| recombination factor protein RarA [Pseudomonas syringae Cit 7]
          Length = 207

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 27/160 (16%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +   +  A       I     V  +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLAKLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKK 196
             A V  +   D+  L K++ +   +      RQ+ +  +
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRQLTLSDE 192


>gi|296109578|ref|YP_003616527.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
 gi|295434392|gb|ADG13563.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
          Length = 369

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 34/152 (22%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108
            W  + V+  GP G+GK+ +A   + ++                  + AK +  +     
Sbjct: 149 EWAPKNVLFYGPPGTGKTMMARALATETDSSFIMVKAPELIGEHVGDSAKMIRELYKKAS 208

Query: 109 KP----VLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     + ++++D +  +                L   ++ I +    + + A   P   
Sbjct: 209 ESAPCIIFIDELDAIGLSREYQSLRGDVAEVVNALLTELDGIKENKGVVTIAATNNPAML 268

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
              +    SR +     K+  P+D+   K++ 
Sbjct: 269 DSAI---RSRFEEEIEFKL--PNDEERLKIME 295


>gi|254497210|ref|ZP_05110020.1| putative transposase subunit 2 [Legionella drancourtii LLAP12]
 gi|254353557|gb|EET12282.1| putative transposase subunit 2 [Legionella drancourtii LLAP12]
          Length = 251

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 24/119 (20%)

Query: 62  WPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL--------------- 104
           W SR   V++ GP+G+GK+ LA  +++++    FS     L  +                
Sbjct: 95  WISRKQNVLITGPTGTGKTWLACAFANQACREGFSTRYLRLPRLFQALEVAKGDGSYIKL 154

Query: 105 ---IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
              +   + ++L+D  L   N++Q   L  I++      SS L+T++     W   + D
Sbjct: 155 LASLAKTQLIILDDWGLAPMNESQRRDLLEIMDD-RHNQSSTLVTSQLPVNLWHDSIGD 212


>gi|195493667|ref|XP_002094514.1| GE21865 [Drosophila yakuba]
 gi|194180615|gb|EDW94226.1| GE21865 [Drosophila yakuba]
          Length = 398

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E
Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE 226


>gi|145331409|ref|NP_001078063.1| ATP binding / nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|110739496|dbj|BAF01657.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255469|gb|AEC10563.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
          Length = 487

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S++T F+  A SL S  +   + ++
Sbjct: 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLV 297


>gi|78047616|ref|YP_363791.1| recombination factor protein RarA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036046|emb|CAJ23737.1| putative ATPase [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 457

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +  + +  F  I+  L    +   + VL E           +
Sbjct: 62  MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 118

Query: 127 F-----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
                 H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 175

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     A+R +      + +     I    +  +  A  L++    LA 
Sbjct: 176 PQDIVEALQRAL---RDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA 232

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 233 GEGGEITPQTLLQVLADRTR 252


>gi|269216091|ref|ZP_06159945.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
 gi|269130350|gb|EEZ61428.1| replication-associated recombination protein A [Slackia exigua ATCC
           700122]
          Length = 443

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 28/183 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------VL 112
           VIL GP+G+GK+ +A I ++ +RS     S I  ++  +  +                + 
Sbjct: 56  VILFGPAGTGKTSIARIIAETTRSAFVEVSAIGGTVADLRREISAAERRLASAGTKTILF 115

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I          L H      +    +L+ A T    + V    L SR   + +V++ 
Sbjct: 116 VDEIHRFSRSQQDALLH----AVENRVVILVGATTENPFFEVNSA-LISR---SRIVELH 167

Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
              D  +  ++    AD R +          A  IV         A   ++    LA S 
Sbjct: 168 ALSDADIASILDAALADERGLRGRFAFADGAARAIVDLSGGDARGALTTLELASQLAESE 227

Query: 227 GMG 229
           G  
Sbjct: 228 GRK 230


>gi|242211508|ref|XP_002471592.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729364|gb|EED83240.1| predicted protein [Postia placenta Mad-698-R]
          Length = 380

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 18/142 (12%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDL 118
           S  +  +I  GP G GK+ LA + + ++ +     S     +  +     +   +  +  
Sbjct: 38  SGATGSMIFWGPPGCGKTTLARLLAKRTDAIFKELSATDSGISDVRAVVEEAKGVLALTG 97

Query: 119 LDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
                T LF    H  N           +     L+ A T   S+ +    L SR     
Sbjct: 98  RQAVRTILFLDEVHRFNKAQQDIFLPFLEQGHLQLIGATTENPSFKLTGA-LISR---CR 153

Query: 167 VVKISLPDDDFLEKVIVKMFAD 188
           V  +    DD + K++ +    
Sbjct: 154 VFVLERLTDDDITKIVTQAVER 175


>gi|172036958|ref|YP_001803459.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171698412|gb|ACB51393.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 660

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 58/220 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++  T FS  A     + + T                   
Sbjct: 244 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCI 303

Query: 111 VLLEDIDLLDFN--------------DTQLFHIIN----SIHQYDSSLLMTARTFPVSWG 152
           + ++++D +  +              +  L  ++           + +++ A   P +  
Sbjct: 304 IFIDELDAIGKSRSGGNGISGSNDEREQTLNQLLTEMDGFAVGDATVIVLAATNRPETLD 363

Query: 153 VCL--------------PDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFID 194
             L              PDL  RL      A  V+I    D  L+ +           + 
Sbjct: 364 PALLRPGRFDRQVLVDRPDLAGRLAILEIYAQRVEIDP--DVNLKDIATHTPGFAGADLA 421

Query: 195 KKL--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230
             +  AA +  R +R  V      + ++     L +   +
Sbjct: 422 NLVNEAALLAARNQREYVTQADFKEAIERVVAGLEKKSRV 461


>gi|226193735|ref|ZP_03789337.1| ATPase, AAA family [Burkholderia pseudomallei Pakistan 9]
 gi|254298872|ref|ZP_04966322.1| ATPase, AAA family [Burkholderia pseudomallei 406e]
 gi|157809189|gb|EDO86359.1| ATPase, AAA family [Burkholderia pseudomallei 406e]
 gi|225934040|gb|EEH30025.1| ATPase, AAA family [Burkholderia pseudomallei Pakistan 9]
          Length = 485

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 99  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 157

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 158 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 211

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             +D L +++ K   D     +  D K    +V   +     A + ++ ++  
Sbjct: 212 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 260


>gi|323140860|ref|ZP_08075773.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
 gi|322414598|gb|EFY05404.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067]
          Length = 617

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + +++   FS        + +                     
Sbjct: 200 ALLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEMFVGMGAARVRDLFKQAQEKAPCI 259

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++        +++ A   P S     
Sbjct: 260 VFIDEIDAIGKRRDNGQFGGNDEREQTLNQLLSEMDGFDGSKGVVILAATNRPESLDKAL 319

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 320 LRPGRFDRRIPVELPDLKGR 339


>gi|294648646|ref|ZP_06726108.1| recombination factor protein RarA [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825436|gb|EFF84177.1| recombination factor protein RarA [Acinetobacter haemolyticus ATCC
           19194]
          Length = 426

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 34/192 (17%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSI 103
                ++ID         +I  GP G GK+ +A + +        S  A       L  +
Sbjct: 31  NAPLRQMIDQ---GHLPSIIFWGPPGVGKTTIALLLAQAVDRPFISLSALNTGVKELREV 87

Query: 104 LIDTRKP----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
           + ++       V +++I   + +      ++N++ +     L+ A T   S+ V    L 
Sbjct: 88  IAESGDLLTPVVFIDEIHRFNKSQQD--ALLNAV-EKGKITLIGATTENPSFEVNSA-LL 143

Query: 160 SRLKAATVVKISLPDDDFLEKVI------VKMFADRQIFID--KKLAAYIVQRMERSLVF 211
           SR     V  ++  D + ++ ++       K   +R I I+    L  +           
Sbjct: 144 SR---CQVYTLNSLDAEAIQTLLNKAIQTDKFLKERFIQIEEYDALIQFAA-------GD 193

Query: 212 AEKLVDKMDNLA 223
           A K ++ +D +A
Sbjct: 194 ARKALNLIDLIA 205


>gi|228989273|ref|ZP_04149266.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus pseudomycoides
           DSM 12442]
 gi|228995456|ref|ZP_04155126.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228764317|gb|EEM13194.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides
           Rock3-17]
 gi|228770483|gb|EEM19054.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus pseudomycoides
           DSM 12442]
          Length = 616

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 62/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 181 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 240

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 241 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 300

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D  +    I  R       
Sbjct: 301 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDDDINLRAIATRTP-GFSG 351

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 352 A-DLENLLNEAALVAAR 367


>gi|224023566|ref|ZP_03641932.1| hypothetical protein BACCOPRO_00269 [Bacteroides coprophilus DSM
           18228]
 gi|224016788|gb|EEF74800.1| hypothetical protein BACCOPRO_00269 [Bacteroides coprophilus DSM
           18228]
          Length = 341

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 31/202 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L+NI +++            LD           LE  D+L  ++   
Sbjct: 58  VLLHGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHR 117

Query: 127 F------HIINSIHQYDSSLLMTARTFPVSWGVCLPDL----------CS-------RLK 163
                  ++ +++  Y   +++     P +  + L DL           S       R +
Sbjct: 118 LSPVVEEYLYSAMEDYRIDIMI--DKGPSARSIQL-DLNPFTLVGATTRSGLLTAPLRAR 174

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDKMD 220
               + +   DD  L ++I++      +  D   A  I  R     R      + V   D
Sbjct: 175 FGINLHLEYYDDTILSRIILRSAGILGVPCDVDAAGEIASRSRGTPRIANALLRRVR--D 232

Query: 221 NLALSRGMGITRSLAAEVLKET 242
              +     I   +A   L+  
Sbjct: 233 FAQVKGSGRIDVEIARYALEAL 254


>gi|224010519|ref|XP_002294217.1| nuclear vcp-like-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220970234|gb|EED88572.1| nuclear vcp-like-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 605

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R V+L GP G GK+ LA   + +   + F   A  L
Sbjct: 33  PPRGVLLRGPPGCGKTHLAKAIAGELNVSYFQVSAPEL 70



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+L GP G GK+ LA   +++S +   S     L    +   +
Sbjct: 359 VLLYGPPGCGKTLLAKAIANESGANFISVKGPELLDKYVGESE 401


>gi|212537065|ref|XP_002148688.1| sister chromatid cohesion factor (Chl12), putative [Penicillium
           marneffei ATCC 18224]
 gi|210068430|gb|EEA22521.1| sister chromatid cohesion factor (Chl12), putative [Penicillium
           marneffei ATCC 18224]
          Length = 1133

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P ++++L GP G GK+ LA++ + ++ 
Sbjct: 445 PRKILMLTGPPGLGKTTLAHVCAQQAG 471


>gi|196250112|ref|ZP_03148806.1| Holliday junction DNA helicase RuvB [Geobacillus sp. G11MC16]
 gi|196210296|gb|EDY05061.1| Holliday junction DNA helicase RuvB [Geobacillus sp. G11MC16]
          Length = 333

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 45/210 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +L+           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLAAIIANEMGVKMRATSGPALERPGDLAALLTSLEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDL--------------------- 158
            H +    +        D  L +T    P +  + L DL                     
Sbjct: 114 -HRLPRTVEEVLYPAMEDYCLDITVGKGPEARSLRL-DLPPFTLVGATTRAGALSAPLRD 171

Query: 159 ----CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
                SRL+   V        D L ++I +  A   I I+ + A  + +R   +   A +
Sbjct: 172 RFGVISRLEYYQV--------DQLAQIIERAAAILHIIINNEAALELARRARGTPRIANR 223

Query: 215 LVDKM-DNLALSRGMGITRSLAAEVLKETQ 243
           L+ ++ D   +S    IT  LA E L+  Q
Sbjct: 224 LLRRVRDFAQVSGDGEITLPLAVEALERLQ 253


>gi|186510248|ref|NP_188608.3| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
          Length = 1001

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 43/144 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P + ++L GP G+GK+ LA   + ++ +   S    +L S                    
Sbjct: 746 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKL 805

Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144
            PV++  +++D L       F H     + N                 L++ A       
Sbjct: 806 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDL 865

Query: 145 -----RTFPVSWGVCLPDLCSRLK 163
                R  P    V LPD  +RLK
Sbjct: 866 DDAVIRRLPRRIYVDLPDAENRLK 889


>gi|332642761|gb|AEE76282.1| P-loop containing nucleoside triphosphate hydrolase
           domain-containing protein [Arabidopsis thaliana]
          Length = 993

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 43/144 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P + ++L GP G+GK+ LA   + ++ +   S    +L S                    
Sbjct: 738 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKL 797

Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144
            PV++  +++D L       F H     + N                 L++ A       
Sbjct: 798 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDL 857

Query: 145 -----RTFPVSWGVCLPDLCSRLK 163
                R  P    V LPD  +RLK
Sbjct: 858 DDAVIRRLPRRIYVDLPDAENRLK 881


>gi|325968458|ref|YP_004244650.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707661|gb|ADY01148.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta moutnovskia
           768-28]
          Length = 737

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 28/114 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P + V+L+GP G+GK+ LA   + ++ +   +     + S      +             
Sbjct: 218 PPKGVLLIGPPGTGKTLLAKAVATETNAYFIAINGPEIVSKYYGESEAKLREIFEEAKKN 277

Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP 148
               + +++ID +                 QL  +++ + +    +++ A   P
Sbjct: 278 APAIIFIDEIDAIAPKREEVTGEVEKRIVAQLLTLMDGLQERGQVIVIGATNRP 331



 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 494 PPKGILLFGPPGTGKTLLAKAVATESNANFIA 525


>gi|323144222|ref|ZP_08078854.1| replication-associated recombination protein A [Succinatimonas
           hippei YIT 12066]
 gi|322415997|gb|EFY06699.1| replication-associated recombination protein A [Succinatimonas
           hippei YIT 12066]
          Length = 475

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 29/194 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113
           +I  GP G GK+ LA I +  S +                + I +++       R  + +
Sbjct: 70  MIFWGPPGVGKTTLALIIAKSSGAVLEQISAVTSGVKDIRAAIDRAMSRKRQGVRTVLFV 129

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +  + + + A T   S+ +    L SR   A V  +   
Sbjct: 130 DEVHRFNKSQQDAFLPY---IENGTIIFIGATTENPSFELNSA-LLSR---ARVYVLKKL 182

Query: 174 DDDFLEKVI------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             + L+ ++       K      + +  K+   ++   E         ++ + +LA    
Sbjct: 183 SPEELKALLHHALESEKGLKSENLVLADKVEDALIDLSEGDGRHLLNTLEMLVDLAAPYK 242

Query: 228 ---MGITRSLAAEV 238
                IT ++   V
Sbjct: 243 DGSKIITFAMVGAV 256


>gi|313906218|ref|ZP_07839564.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
 gi|313468948|gb|EFR64304.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6]
          Length = 622

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 65/207 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 193 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCI 252

Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++        +++ A   P S     
Sbjct: 253 VFIDEIDTIGKKRDGGGFSGNDEREQTLNQLLAEMDGFDGKKGVVILAATNRPDSLDPAL 312

Query: 152 ----------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
                      V LPDL  R                 E+++      ++I I   +    
Sbjct: 313 TRPGRFDRRIPVELPDLQGR-----------------EQILRLHA--KKIRISDNVDFNA 353

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGM 228
           V R   S     +L + ++  AL    
Sbjct: 354 VARTA-SGASGAELANMINEAALRAVR 379


>gi|302404251|ref|XP_002999963.1| SAP1 [Verticillium albo-atrum VaMs.102]
 gi|261361145|gb|EEY23573.1| SAP1 [Verticillium albo-atrum VaMs.102]
          Length = 783

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +SRST FS  A SL S  +   + ++
Sbjct: 527 PARGMLLFGPPGTGKTMLARAVATESRSTFFSISASSLTSKYLGESEKLV 576


>gi|242095208|ref|XP_002438094.1| hypothetical protein SORBIDRAFT_10g007950 [Sorghum bicolor]
 gi|241916317|gb|EER89461.1| hypothetical protein SORBIDRAFT_10g007950 [Sorghum bicolor]
          Length = 319

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 43/144 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P + ++L GP G+GK+ LA   + ++ +   S    +L S                    
Sbjct: 62  PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKSLFSFASRL 121

Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144
            PV++  +++D L       F H     + N            +    L++ A       
Sbjct: 122 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILVLGATNRPFDL 181

Query: 145 -----RTFPVSWGVCLPDLCSRLK 163
                R  P    V LPD  +R+K
Sbjct: 182 DDAVIRRLPRRILVDLPDAQNRMK 205


>gi|237724750|ref|ZP_04555231.1| TnpB [Bacteroides sp. D4]
 gi|229436945|gb|EEO47022.1| TnpB [Bacteroides dorei 5_1_36/D4]
          Length = 236

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +IL+GPSG+GK+ LA      +    +     +++ I+                  I   
Sbjct: 103 LILIGPSGTGKTFLAAGLVFDAVKAGYKAYLMTMEDIVNSLRLKDISTPAMMTYNKILRA 162

Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + + + DI L        T  F++IN++H+  +S+++T    P      L D
Sbjct: 163 QLLAINDIMLFPVKRKEATAFFNLINTLHE-KTSIIITTNKAPTECVETLND 213


>gi|258651044|ref|YP_003200200.1| ABC transporter [Nakamurella multipartita DSM 44233]
 gi|258554269|gb|ACV77211.1| ABC transporter related [Nakamurella multipartita DSM 44233]
          Length = 266

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           WP +   ++GPSGSGKS L +  +    ++  S      +   +  ++   +   D + F
Sbjct: 50  WPGQFTAIMGPSGSGKSTLMHCLAALDSASSGSVFVGDAELTRLGDKELTRIRR-DRIGF 108

Query: 122 NDTQLFHIINSI 133
               +F   N +
Sbjct: 109 ----VFQAFNLV 116


>gi|289581037|ref|YP_003479503.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
 gi|289530590|gb|ADD04941.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
          Length = 410

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  +L    
Sbjct: 185 PPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVRKFIGEGSRLVRDLFELARER 244

Query: 123 DTQL 126
           +  +
Sbjct: 245 EPAI 248


>gi|237807856|ref|YP_002892296.1| ATP-dependent protease ATP-binding subunit ClpX [Tolumonas auensis
           DSM 9187]
 gi|259491271|sp|C4LDB4|CLPX_TOLAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|237500117|gb|ACQ92710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Tolumonas
           auensis DSM 9187]
          Length = 426

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 20/104 (19%)

Query: 30  FSFPRCLGISRDDLLVHSAIE------QAVRLIDSWPSWPS--------RVVILVGPSGS 75
              P  +    DD ++   +                 S  S          ++L+GP+GS
Sbjct: 66  LPTPHKIRAHLDDYVIGQDLAKKVLAVAVYNHYKRLRSGSSADGVELGKSNILLIGPTGS 125

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           GK+ LA   +      R  ++  ++      T    + ED++ +
Sbjct: 126 GKTLLAETLA------RLLDVPFTMADATTLTEAGYVGEDVENI 163


>gi|207722841|ref|YP_002253276.1| transposition helper protein (partial sequence c terminus)
           [Ralstonia solanacearum MolK2]
 gi|206588025|emb|CAQ18606.1| putative transposition helper protein (partial sequence c terminus)
           [Ralstonia solanacearum MolK2]
          Length = 330

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 161 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 215

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 216 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 273

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 274 FTQWATAFAD 283


>gi|126140372|ref|XP_001386708.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal
           cap subunit) [Scheffersomyces stipitis CBS 6054]
 gi|126093992|gb|ABN68679.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal
           cap subunit) [Scheffersomyces stipitis CBS 6054]
          Length = 416

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A ++    I     ++ E
Sbjct: 193 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 244


>gi|15645640|ref|NP_207816.1| recombination factor protein RarA [Helicobacter pylori 26695]
 gi|2314168|gb|AAD08068.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           26695]
          Length = 391

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 20/169 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIAYMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   + + +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              L+++  K     +  I+     Y++     S   A  L++ +D  A
Sbjct: 151 KSDLDRLCAKALTLLKKQIEPGAKTYLLNN---SAGDARALLNLLDLSA 196


>gi|24745880|dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum]
 gi|76160929|gb|ABA40428.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Solanum
           tuberosum]
          Length = 398

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E        
Sbjct: 171 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 222

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 223 ------MFNYARDHQ 231


>gi|16081896|ref|NP_394300.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum DSM 1728]
 gi|11387127|sp|O05209|VAT_THEAC RecName: Full=VCP-like ATPase
 gi|1916752|gb|AAC45089.1| VCP-like ATPase [Thermoplasma acidophilum]
 gi|10640117|emb|CAC11969.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum]
          Length = 745

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS+  +L GP G GK+ LA   + +S +   S
Sbjct: 500 PSKGFLLYGPPGVGKTLLAKAVATESNANFIS 531



 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + VIL GP G+GK+ +A   +++S +   S
Sbjct: 223 PPKGVILYGPPGTGKTLIARAVANESGANFLS 254


>gi|87124614|ref|ZP_01080463.1| putative transposase [Synechococcus sp. RS9917]
 gi|86168186|gb|EAQ69444.1| putative transposase [Synechococcus sp. RS9917]
          Length = 203

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 22/111 (19%)

Query: 67  VILVGPSGSGKSCL--------------ANIWSDKSRSTRFSNIAKSLDSILI----DTR 108
           ++L GPSG GK+ L                 +   +          + D   I    D  
Sbjct: 50  LLLFGPSGVGKTHLAIAITMAMAAQDQACRFFPATALVQLLQKAKAAYDLPAILQKLDRY 109

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             ++++DI  +  ++ +   LF +I        SLL+T+      W    P
Sbjct: 110 SLLVIDDISYVRRSELETSVLFELICH-RYERRSLLVTSNQPFREWDDIFP 159


>gi|66475900|ref|XP_627766.1| 26S proteasome regulatory subunit 7 (RPT1)-like. AAA atpase
           [Cryptosporidium parvum Iowa II]
 gi|67596376|ref|XP_666072.1| 26S proteasome ATPase subunit [Cryptosporidium hominis TU502]
 gi|32399011|emb|CAD98476.1| 26s proteasome ATPase subunit, probable [Cryptosporidium parvum]
 gi|46229183|gb|EAK90032.1| 26S proteasome regulatory subunit 7 (RPT1)-like. AAA atpase
           [Cryptosporidium parvum Iowa II]
 gi|54656986|gb|EAL35842.1| 26S proteasome ATPase subunit [Cryptosporidium hominis]
          Length = 432

 Score = 40.5 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 48/155 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 207 PPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRELFKLARSK 266

Query: 113 ------LEDIDLLD---FNDTQ---------LFHIINSIHQYDSS----LLMTARTF--- 147
                 ++++D +     +++          +  I+N +  +D+     +LM        
Sbjct: 267 KACILFIDEVDAIGGARGDESAHGDHEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 326

Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKISL 172
            P               LPDL  R     + +I  
Sbjct: 327 DPALLRPGRLDRKVEFGLPDLEGR---TQIFRIHA 358


>gi|326795235|ref|YP_004313055.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinomonas
           mediterranea MMB-1]
 gi|326545999|gb|ADZ91219.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinomonas
           mediterranea MMB-1]
          Length = 338

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P    ++ GP G GK+ LANI +++  +   +     L+           LED D+L  +
Sbjct: 54  PLDHTLIFGPPGLGKTTLANIVANEMGADIKTTSGPVLERAGDLAALLTNLEDGDVLFID 113

Query: 123 DT 124
           + 
Sbjct: 114 EI 115


>gi|297828269|ref|XP_002882017.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297327856|gb|EFH58276.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 491

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S++T F+  A SL S  +   + ++
Sbjct: 252 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLV 301


>gi|291550267|emb|CBL26529.1| ATP-dependent metalloprotease FtsH [Ruminococcus torques L2-14]
          Length = 618

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 205 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQANEKAPCI 264

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++        +++ A   P S     
Sbjct: 265 VFIDEIDTIGKKRDNAGYGGNDEREQTLNQLLTEMDGFDASKGVVILAATNRPDSLDPAL 324

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 325 LRPGRFDRRIPVELPDLKGR 344


>gi|269976860|ref|ZP_06183834.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1]
 gi|306819509|ref|ZP_07453216.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239]
 gi|269934691|gb|EEZ91251.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1]
 gi|304647801|gb|EFM45119.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239]
          Length = 765

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 43/196 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEMFVGMGASRVRDLFEQARNAAPAI 282

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++   +  + +L+ A   P      L
Sbjct: 283 IFVDEIDAVGRHRGTGMGGGHDEREQTLNQLLVEMDGFDERTNVILIAATNRPDVLDPAL 342

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD    E ++     ++ +  D  L A + +R       A
Sbjct: 343 ------LRPGRFDRQVAVEAPDIKGREAILTVHAKNKPLSKDTDLKA-LAKRTP-GFTGA 394

Query: 213 EKLVDKMDNLALSRGM 228
             L + ++  AL    
Sbjct: 395 -DLANVLNEAALLAAR 409


>gi|255326056|ref|ZP_05367144.1| AFG1-family ATPase [Rothia mucilaginosa ATCC 25296]
 gi|255296947|gb|EET76276.1| AFG1-family ATPase [Rothia mucilaginosa ATCC 25296]
          Length = 351

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA++W               +     +        + + K V +++
Sbjct: 87  LYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDE 146

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
            +L D  DT L   ++  +      L+ T+ T P + G
Sbjct: 147 FELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALG 184


>gi|226953311|ref|ZP_03823775.1| recombination factor protein RarA [Acinetobacter sp. ATCC 27244]
 gi|226835937|gb|EEH68320.1| recombination factor protein RarA [Acinetobacter sp. ATCC 27244]
          Length = 425

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 34/192 (17%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSI 103
                ++ID         +I  GP G GK+ +A + +        S  A       L  +
Sbjct: 30  NAPLRQMIDQ---GHLPSIIFWGPPGVGKTTIALLLAQAVDRPFISLSALNTGVKELREV 86

Query: 104 LIDTRKP----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
           + ++       V +++I   + +      ++N++ +     L+ A T   S+ V    L 
Sbjct: 87  IAESGDLLTPVVFIDEIHRFNKSQQD--ALLNAV-EKGKITLIGATTENPSFEVNSA-LL 142

Query: 160 SRLKAATVVKISLPDDDFLEKVI------VKMFADRQIFID--KKLAAYIVQRMERSLVF 211
           SR     V  ++  D + ++ ++       K   +R I I+    L  +           
Sbjct: 143 SR---CQVYTLNSLDAEAIQTLLNKAIQTDKFLKERFIQIEEYDALIQFAA-------GD 192

Query: 212 AEKLVDKMDNLA 223
           A K ++ +D +A
Sbjct: 193 ARKALNLIDLIA 204


>gi|226504502|ref|NP_001151994.1| ABC-2 type transporter family protein [Zea mays]
 gi|195651659|gb|ACG45297.1| ABC-2 type transporter family protein [Zea mays]
          Length = 643

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P R++ L+GPSGSGK+ L N+ + +  +
Sbjct: 88  PGRLLALMGPSGSGKTTLLNVLAGQLAA 115


>gi|149239116|ref|XP_001525434.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146450927|gb|EDK45183.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 211 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIRE 262


>gi|83591529|ref|YP_425281.1| ABC transporter transmembrane region [Rhodospirillum rubrum ATCC
           11170]
 gi|83574443|gb|ABC20994.1| ABC transporter, transmembrane region [Rhodospirillum rubrum ATCC
           11170]
          Length = 593

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P     +VGPSG+GK+ LA++ +   R       A S+  + +    P  L  +    F 
Sbjct: 354 PGARTAIVGPSGAGKTTLAHLAA---RFWDPQQGAISIGGVPLSDYAPETLVRLTASVFQ 410

Query: 123 DTQLFH 128
           D  LFH
Sbjct: 411 DVFLFH 416


>gi|57239404|ref|YP_180540.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579374|ref|YP_197586.1| Holliday junction DNA helicase B [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617429|ref|YP_196628.1| Holliday junction DNA helicase B [Ehrlichia ruminantium str.
           Gardel]
 gi|81311314|sp|Q5FG39|RUVB_EHRRG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|81819219|sp|Q5HAK4|RUVB_EHRRW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|57161483|emb|CAH58409.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417041|emb|CAI28154.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Gardel]
 gi|58418000|emb|CAI27204.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 331

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSIL--IDTRKPVLLE 114
           P   ++L GP G GK+ LA+I +       +S +    + A  L +IL  +  R  + ++
Sbjct: 52  PIDHILLYGPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQARDVLFID 111

Query: 115 DIDLLDFNDTQLF 127
           +I  L+ N  ++ 
Sbjct: 112 EIHRLNRNIEEIL 124


>gi|11498895|ref|NP_070126.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
 gi|41688749|sp|O28972|Y1297_ARCFU RecName: Full=Cell division cycle protein 48 homolog AF_1297
 gi|2649281|gb|AAB89948.1| cell division control protein 48, AAA family (cdc48-1)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 733

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R ++L GP G+GK+ LA   +++S +   S     L
Sbjct: 488 PPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPEL 525



 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 63/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ +A   +++  +                   + L  I  + ++ 
Sbjct: 215 PPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKEN 274

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 275 APSIIFIDEIDSIAPKREEVTGEVERRVVAQLLALMDGLEARGDVIVIAATNRPDAID-- 332

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD +  ++++      R++ + + +
Sbjct: 333 -PALRRPGRFDREIEIGVPDKEGRKEILE--IHTRKMPLAEDV 372


>gi|310779039|ref|YP_003967372.1| ABC transporter related protein [Ilyobacter polytropus DSM 2926]
 gi|309748362|gb|ADO83024.1| ABC transporter related protein [Ilyobacter polytropus DSM 2926]
          Length = 227

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
             +L GPSGSGK+ L NI     R+T    +   +D  L+  +  
Sbjct: 35  FTVLAGPSGSGKTTLLNIIGAMDRATSGKALVDGVDLSLLKPKDA 79


>gi|302308716|ref|NP_985735.2| AFR188Wp [Ashbya gossypii ATCC 10895]
 gi|299790761|gb|AAS53559.2| AFR188Wp [Ashbya gossypii ATCC 10895]
          Length = 827

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++SR+   S
Sbjct: 560 VLLWGPPGCGKTLLAKAVANESRANFIS 587


>gi|298708669|emb|CBJ26156.1| putative; katanin like protein [Ectocarpus siliculosus]
          Length = 452

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + +S +  F+  +  L
Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATESDAVFFAVSSSDL 201


>gi|240948710|ref|ZP_04753082.1| recombination factor protein RarA [Actinobacillus minor NM305]
 gi|240296926|gb|EER47504.1| recombination factor protein RarA [Actinobacillus minor NM305]
          Length = 444

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 35/200 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I +    +   R S +   +  I     +      ++      T
Sbjct: 52  MIFWGPPGTGKTTLAEIIAYHFDADVERLSAVTSGIKEIREAIERA----KLNRQTGRRT 107

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A V  +
Sbjct: 108 LLFVDEVHRFNKSQQDAFLPYIEDGTIIFIGATTENPSFELNNA---LLSR---ARVYIL 161

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                  +  V+     D  R +      +   +   +   +     +A   +++M ++A
Sbjct: 162 KPLQPADVLVVLQNALNDKTRGLGAEKIILKDNVLNLLADYVNGDARYALNCLEQMSDMA 221

Query: 224 LS--RGMGITRSLAAEVLKE 241
                G     +L  E+L E
Sbjct: 222 TQTEAGKLFDLNLLTEILGE 241


>gi|257791250|ref|YP_003181856.1| IstB domain-containing protein ATP-binding protein [Eggerthella
           lenta DSM 2243]
 gi|257475147|gb|ACV55467.1| IstB domain protein ATP-binding protein [Eggerthella lenta DSM
           2243]
          Length = 247

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 32/151 (21%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILI------ 105
           ++S+     R + + G  G GKS     LAN + D    T F+  +  L+ I        
Sbjct: 90  LESFEGSAGRGLYIYGSVGRGKSYSAAALANAFVDAGYRTVFTTASAMLERIKASFSGNG 149

Query: 106 ---------DTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
                         ++L+D+   D  +++   +F +IN+ ++     + T+   P +   
Sbjct: 150 ETDSVISRYAACDVLVLDDLGKEDAKEWSSNMMFLVINARYENMRPTIFTSNYSPQALSK 209

Query: 154 CLPD---------LCSRLKAATV-VKISLPD 174
            L           + SRL   T+ + ++ PD
Sbjct: 210 RLGRKGETETAEAIASRLSETTIPIHLTGPD 240


>gi|227495470|ref|ZP_03925786.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces
           coleocanis DSM 15436]
 gi|226831017|gb|EEH63400.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces
           coleocanis DSM 15436]
          Length = 444

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 25/155 (16%)

Query: 54  RLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDT 107
           RL++ + P+     VIL GP G GK+ LA + +  S          S+  K +  ++ + 
Sbjct: 48  RLLEPADPAKAVSSVILWGPPGVGKTTLAYLVARSSGRHFAEVSAVSSGVKEVRDVISEA 107

Query: 108 RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL----------LMTARTFPVSWGVCLPD 157
           ++ +  +  + + F D     +         SL          L+ A T   S+ V  P 
Sbjct: 108 KRHLATDGKETILFIDE----VHRFSKSQQDSLLPAVENRWVTLIAATTENPSFSVISP- 162

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFAD-RQI 191
           L SR   + ++ ++  +D  + K+I +   D R +
Sbjct: 163 LLSR---SILLTLNPLEDADIAKLIHRALDDKRGL 194


>gi|224047252|ref|XP_002194423.1| PREDICTED: nuclear VCP-like [Taeniopygia guttata]
          Length = 857

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 45/179 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKS--------LDSILID 106
           P R  +L GP G GK+ LA   + +        + +   S ++           D  +  
Sbjct: 295 PPRGFLLHGPPGCGKTLLAQAIAGELELPMLKVAATEIVSGVSGESEQKLRELFDQAVSS 354

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 Q    +   N++      L++ A   P S 
Sbjct: 355 APCVLFIDEIDAITPKREVASKDMERRIVAQFLTCMDDLNNVAATTQVLVIGATNRPDSL 414

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
               P L    +A      + + +PD+   EK++  +   R++ + +    +  + + R
Sbjct: 415 D---PALR---RAGRFDREICLGIPDEGAREKILQTLC--RKLKLPES---FEFRHLAR 462


>gi|327303788|ref|XP_003236586.1| sister chromatid cohesion factor [Trichophyton rubrum CBS 118892]
 gi|326461928|gb|EGD87381.1| sister chromatid cohesion factor [Trichophyton rubrum CBS 118892]
          Length = 972

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 13/83 (15%)

Query: 29  FFSFP--RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
              FP      + +D      +        D+      +V++L GP G GK+ LA+I + 
Sbjct: 253 PIVFPGLAKPKLKKDSF----SN-------DAEERAHRKVLLLTGPPGLGKTTLAHICAK 301

Query: 87  KSRSTRFSNIAKSLDSILIDTRK 109
           +         A    S  + T +
Sbjct: 302 QVGYEILEINASDERSRTVVTGR 324


>gi|322383610|ref|ZP_08057366.1| hypothetical protein PL1_2057 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152014|gb|EFX44952.1| hypothetical protein PL1_2057 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 173

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 21/121 (17%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA----------------KSLDSILIDT 107
           S  + L+G  G+GK+ L    ++   +     +                        +  
Sbjct: 30  SNSIALLGRPGAGKTHLLMAVANNLLARGIGVVYFPYVEGFNELRKDLDQLDERVRRLQQ 89

Query: 108 RKPVLLEDI-----DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
            + + ++D+     +  ++   QLF IIN  +     +L+++             + SRL
Sbjct: 90  AEVLFIDDLFKGRSEPTEWQKEQLFAIINYRNLQKLPMLISSERNFAQMVDIDEAIGSRL 149

Query: 163 K 163
           +
Sbjct: 150 R 150


>gi|301787789|ref|XP_002929310.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda
           melanoleuca]
          Length = 403

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIRE-------- 231

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 232 ------MFNYARDHQ 240


>gi|302035799|ref|YP_003796121.1| holliday junction ATP-dependent DNA helicase RuvB [Candidatus
           Nitrospira defluvii]
 gi|300603863|emb|CBK40195.1| Holliday junction ATP-dependent DNA helicase RuvB [Candidatus
           Nitrospira defluvii]
          Length = 345

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 73/197 (37%), Gaps = 27/197 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------LIDTRKPVLLEDIDL 118
            I  GP G GK+ +A+I + +  S   S     L            +  R  + +++I  
Sbjct: 56  AIFYGPPGLGKTTIAHIIAREMGSAIRSTSGLVLSHAGDLAAILTNLQERDVLFIDEIHR 115

Query: 119 LDFN-DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS--RLK 163
           L  + +  L     ++  Y   L++       +  + LP             L S  R +
Sbjct: 116 LPASVEEAL---YPAMEDYQLDLVVGQGASTRTVKLELPRFTLVGATTRAGALTSPLRDR 172

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
              V ++       L  ++ +      I ID+  AA I +R   +     +L+ ++ D  
Sbjct: 173 FGLVHRLEFYSPQELTSIVTRSAGLLNIPIDEAGAAEIARRARGTPRIVNRLIKRIRDYA 232

Query: 223 ALSRGMGITRSLAAEVL 239
            +  G  ITR +A + L
Sbjct: 233 EIKAGGRITRQVAQDAL 249


>gi|298674100|ref|YP_003725850.1| 26S proteasome subunit P45 family protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287088|gb|ADI73054.1| 26S proteasome subunit P45 family [Methanohalobium evestigatum
           Z-7303]
          Length = 446

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L GP G+GK+ LA   + ++ ++    +   L    I     ++ E  ++ 
Sbjct: 225 ILLAGPPGTGKTLLAKAVAHRTDASFIRVVGSELVQKYIGEGAKLVREVFEMA 277


>gi|197301766|ref|ZP_03166836.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC
           29176]
 gi|197299206|gb|EDY33736.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC
           29176]
          Length = 622

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 205 ALLVGPPGTGKTLLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFKQANEKAPCI 264

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++        +++ A   P S     
Sbjct: 265 VFIDEIDTIGKKRDNAGYGGNDEREQTLNQLLTEMDGFDASKGVVILAATNRPDSLDPAL 324

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 325 LRPGRFDRRIPVELPDLKGR 344


>gi|34329323|gb|AAQ24845.2| non-structural polyprotein [Calicivirus isolate 2117]
          Length = 1816

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP+G GK+ LA   + +  S + S +  ++D     T   V +  ID  D N    
Sbjct: 506 IILTGPAGCGKTTLAYAIASRLSSQKPSVLNLNIDHHDAYTGNEVCI--IDEFDSNPESN 563

Query: 127 F 127
           F
Sbjct: 564 F 564


>gi|46199430|ref|YP_005097.1| cell division protein ftsH [Thermus thermophilus HB27]
 gi|55981461|ref|YP_144758.1| cell division protein FtsH [Thermus thermophilus HB8]
 gi|81363931|sp|Q5SI82|FTSH_THET8 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|46197056|gb|AAS81470.1| cell division protein ftsH [Thermus thermophilus HB27]
 gi|55772874|dbj|BAD71315.1| cell division protein FtsH [Thermus thermophilus HB8]
          Length = 624

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G GK+ LA   + ++R    +        + +      + +
Sbjct: 192 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 239


>gi|308497384|ref|XP_003110879.1| CRE-YMEL-1 protein [Caenorhabditis remanei]
 gi|308242759|gb|EFO86711.1| CRE-YMEL-1 protein [Caenorhabditis remanei]
          Length = 735

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           V+LVGP G+GK+ LA   + +++   F       D +L+      + +  D  
Sbjct: 280 VLLVGPPGTGKTLLARAIAGEAQVPFFHTSGSEFDEVLVGQGARRVRDLFDKA 332


>gi|307594201|ref|YP_003900518.1| AAA family ATPase [Vulcanisaeta distributa DSM 14429]
 gi|307549402|gb|ADN49467.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta distributa DSM
           14429]
          Length = 737

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 28/114 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P + V+L+GP G+GK+ LA   + ++ +   +     + S      +             
Sbjct: 218 PPKGVLLIGPPGTGKTLLAKAVATETNAYFIAINGPEIVSKYYGESEAKLREIFEEAKKN 277

Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP 148
               + +++ID +                 QL  +++ + +    +++ A   P
Sbjct: 278 APAIIFIDEIDAIAPKREEVTGEVEKRIVAQLLTLMDGLQERGQVIVIGATNRP 331



 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 494 PPKGILLFGPPGTGKTLLAKAVATESNANFIA 525


>gi|302795259|ref|XP_002979393.1| hypothetical protein SELMODRAFT_110504 [Selaginella moellendorffii]
 gi|300153161|gb|EFJ19801.1| hypothetical protein SELMODRAFT_110504 [Selaginella moellendorffii]
          Length = 491

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P R ++L GP G+GK+ +A   + ++ 
Sbjct: 255 PCRGMLLFGPPGTGKTHIAKAIASEAN 281


>gi|301104184|ref|XP_002901177.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
 gi|262101111|gb|EEY59163.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4]
          Length = 771

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 43/169 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------------LDSILID 106
           P R V+L GP G+GKS LA+  + +  +T     A                   D  +  
Sbjct: 184 PPRGVLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVSGMSGESEQKLRELFDEAISR 243

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTARTF---------PVSW--G 152
               + +++ID +            S    +  +   L+T+            PV     
Sbjct: 244 APSIIFIDEIDAITPKRET------SARGMEKRIVAQLLTSTDSLSLENTGGKPVILIGA 297

Query: 153 VCLPD-LCSRLKAATVVK----ISLPDDDFLEKVIVKMFADRQIFIDKK 196
              PD L S L+ A        + +PD++  EK++  +   R++ ++ +
Sbjct: 298 TNRPDALDSALRRAGRFDREICLGIPDEEAREKILRVLA--RKMTLEGE 344



 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   + +S +   S
Sbjct: 487 VLLYGPPGCGKTLLAKAIAHESGANFIS 514


>gi|226482564|emb|CAX73881.1| Proteasome 26S subunit subunit 4 ATPase [Schistosoma japonicum]
 gi|226482566|emb|CAX73882.1| Proteasome 26S subunit subunit 4 ATPase [Schistosoma japonicum]
          Length = 436

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 45/206 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 214 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRLAEEN 273

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146
                 +++ID +                  +  ++N +     + D  ++M        
Sbjct: 274 APSIVFIDEIDAVGTKRYESNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 333

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          ++  LPD+    ++     +   +  D  L  Y+V + E
Sbjct: 334 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFSIHTSRMTLAEDVNLEEYVVSKDE 385

Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231
            S    + +  +   LAL      +T
Sbjct: 386 LSGADIKAICTEAGLLALRERRMKVT 411


>gi|257125126|ref|YP_003163240.1| Holliday junction DNA helicase RuvB [Leptotrichia buccalis
           C-1013-b]
 gi|257049065|gb|ACV38249.1| Holliday junction DNA helicase RuvB [Leptotrichia buccalis
           C-1013-b]
          Length = 337

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 30/189 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + + +            L+           LE+ D+L  ++   
Sbjct: 56  ILLYGPPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEI-- 113

Query: 127 FHIINS--------IHQYDSSLLMTARTFPVS-WGVCLPD----------------LCSR 161
            H +N+          +     ++  +        V LP                 L  R
Sbjct: 114 -HRLNTSVEEILYPAMEDGELDILIGKGPSARSIRVELPRFTLIGATTRAGQLSTPLRDR 172

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
                 ++    ++  L+++I +      I  D+     I +R   +   A +L+ +  +
Sbjct: 173 FGVTHRMEYYQLEE--LKEIIRRGANILNISYDEDGITEIAKRSRGTPRIANRLLKRARD 230

Query: 222 LALSRGMGI 230
            AL  G G+
Sbjct: 231 FALVEGSGV 239


>gi|303280281|ref|XP_003059433.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459269|gb|EEH56565.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 673

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           P R V+L GP G GK+ LA+  + ++    FS  A  + + +    + 
Sbjct: 46  PPRGVLLHGPPGCGKTTLAHAIAREAGVPFFSIAATEIVAGVSGESEA 93


>gi|194869501|ref|XP_001972464.1| GG15543 [Drosophila erecta]
 gi|190654247|gb|EDV51490.1| GG15543 [Drosophila erecta]
          Length = 398

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E
Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE 226


>gi|163841106|ref|YP_001625511.1| AFG1 family ATPase [Renibacterium salmoninarum ATCC 33209]
 gi|162954582|gb|ABY24097.1| AFG1-family ATPase [Renibacterium salmoninarum ATCC 33209]
          Length = 361

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA++W +             +     ++       +   K V +++
Sbjct: 98  IYLDGGFGVGKTHLLASLWHEAPGPKAFGTFVEYTNLVGALSFRKTVEALKEYKLVCIDE 157

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
            +L D  DT L   ++  +      L  T+ T P S G
Sbjct: 158 FELDDPGDTVLMSRLMRELADAGVRLAATSNTLPGSLG 195


>gi|8051696|dbj|BAA96090.1| FtsH [Thermus thermophilus]
          Length = 624

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G GK+ LA   + ++R    +        + +      + +
Sbjct: 192 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 239


>gi|85717673|ref|ZP_01048610.1| putative transposase [Nitrobacter sp. Nb-311A]
 gi|85695496|gb|EAQ33417.1| putative transposase [Nitrobacter sp. Nb-311A]
          Length = 521

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GK+ LA   +        + R     ++   L+    + R+  L E +
Sbjct: 332 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 391

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 392 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 440


>gi|269956671|ref|YP_003326460.1| AFG1-family ATPase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305352|gb|ACZ30902.1| AFG1-family ATPase [Xylanimonas cellulosilytica DSM 15894]
          Length = 358

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 40/190 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS------------------TRFSNIAKSLDSIL 104
            +  V L G  G GK+ L    +    +                       +        
Sbjct: 87  AAPAVYLDGGFGVGKTHLLASLAHAVTADGPDGADQIAYGTFVEYTNLVGALGFQNTVAA 146

Query: 105 IDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG---VCLPD--- 157
           +  +K V +++ +L D  DT L   ++  +     +L  T+ T P + G       D   
Sbjct: 147 LAAKKLVCIDEFELDDAGDTTLMSRLLRELTDRGVALAATSNTLPEALGEGRFAAEDFLR 206

Query: 158 ----LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
               L SR +   V      DD     V+     D +      + AY   R +      +
Sbjct: 207 EIQALASRFEVMRV----DGDDYRHRAVV----TDSRPLPADVVGAYAATRPD---ATCD 255

Query: 214 KLVDKMDNLA 223
           +  D +D+LA
Sbjct: 256 RFGDLLDHLA 265


>gi|207725169|ref|YP_002255565.1| transposition helper protein [Ralstonia solanacearum MolK2]
 gi|206590403|emb|CAQ37365.1| probable transposition helper protein [Ralstonia solanacearum
           MolK2]
          Length = 226

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 57  ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 111

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 112 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 169

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 170 FTQWATAFAD 179


>gi|330875796|gb|EGH09945.1| recombination factor protein RarA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 440

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R++ +  +  A ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEDRGLGQRKLTLSDEGFAMLMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NLLENASDLAEDGSEIDLELLQSLLGDSRR 239


>gi|321309519|ref|YP_004191848.1| chromosomal replication initiator protein DnaA [Mycoplasma
           haemofelis str. Langford 1]
 gi|319801363|emb|CBY92009.1| chromosomal replication initiator protein DnaA [Mycoplasma
           haemofelis str. Langford 1]
          Length = 420

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
           ++  V       +  ++ +    S V  L G  G+GKS L   + ++
Sbjct: 98  ENFFVCEYNSSTINKLEEFLRSDSDVFYLWGNKGTGKSHLIAFFINQ 144


>gi|325973706|ref|YP_004250770.1| cell division protein FtsH [Mycoplasma suis str. Illinois]
 gi|325990149|ref|YP_004249848.1| cell division protease ftsH-like protein [Mycoplasma suis KI3806]
 gi|323575234|emb|CBZ40899.1| Cell division protease ftsH-like protein [Mycoplasma suis]
 gi|323652308|gb|ADX98390.1| cell division protein FtsH [Mycoplasma suis str. Illinois]
          Length = 765

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 37/158 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           VIL GP G+GK+ LA   S +S          S D + +                     
Sbjct: 335 VILYGPPGTGKTLLAKAVSGESNVPFLEASGASFDDMFVGVGAKRVRELFEKAKKLSPCI 394

Query: 111 VLLEDIDLLDFNDTQLFHI-------INS-------IHQYDSSLLMTA--RTFPVSWGVC 154
           + +++ID L       F++       IN         +     +++ A  R   +   V 
Sbjct: 395 IFIDEIDALAGKRGGKFNLQQGNEQTINQLLSEMDGFNTQAGIIVIAATNRLESIDDAVL 454

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192
            P    R      ++I LPD     +++     ++ + 
Sbjct: 455 RP---GRFD--RHIQIDLPDIAERREILKLHAKNKNLS 487


>gi|315425454|dbj|BAJ47117.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum]
          Length = 726

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + +S++   S
Sbjct: 491 PPRGILLYGPPGTGKTLLAKAVATESQANFIS 522



 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + VIL GP G+GK+ +A   ++++ +   S
Sbjct: 218 PPKGVILYGPPGTGKTLIAKAIANETGAHFVS 249


>gi|297803738|ref|XP_002869753.1| hypothetical protein ARALYDRAFT_492469 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315589|gb|EFH46012.1| hypothetical protein ARALYDRAFT_492469 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 933

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 21/100 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P   V+L GP G GK+ +A   + ++    +         +L+                 
Sbjct: 449 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN 508

Query: 111 ----VLLEDIDLLDFNDTQLF-----HIINSIHQYDSSLL 141
               + +++ID L      +F      + N+  Q   + L
Sbjct: 509 KPSVIFIDEIDALATRRQGIFKENSDQLYNAATQERETTL 548


>gi|225680854|gb|EEH19138.1| 26S protease regulatory subunit S10B [Paracoccidioides brasiliensis
           Pb03]
          Length = 382

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 159 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 218

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 219 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 278

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +++    +   + I+ ++           
Sbjct: 279 DPAL------LRAGRLDRKIEIPLPNEVGRLEILKIHAS--GVAIEGEI----------D 320

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 321 FESIVKMSDGLNGADLRN 338


>gi|254469906|ref|ZP_05083311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio
           sp. JE062]
 gi|211961741|gb|EEA96936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio
           sp. JE062]
          Length = 421

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++LVGP+G GK+ LA   +      R  ++  ++      T    + ED++ +
Sbjct: 114 ILLVGPTGCGKTHLAQTLA------RILDVPFTMADATTLTEAGYVGEDVENI 160


>gi|206587550|emb|CAQ18132.1| probable transposition helper protein (partial sequence c terminus)
           [Ralstonia solanacearum MolK2]
          Length = 553

 Score = 40.5 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 384 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 438

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 439 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 496

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 497 FTQWATAFAD 506


>gi|322368342|ref|ZP_08042911.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
           DX253]
 gi|320552358|gb|EFW94003.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
           DX253]
          Length = 407

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +   L    
Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANRTDATFIKMAGSELVQKFIGEGAKLVRDLFSLAAER 243

Query: 123 DTQL 126
           +  +
Sbjct: 244 EPAV 247


>gi|309364944|emb|CAP23560.2| hypothetical protein CBG_03070 [Caenorhabditis briggsae AF16]
          Length = 865

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 513 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 569



 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ S  F                SN+ K+ +    +
Sbjct: 243 PPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKN 302

Query: 107 TRKPVLLEDIDLLD 120
               + +++ID + 
Sbjct: 303 QPAILFIDEIDAIA 316


>gi|239994321|ref|ZP_04714845.1| recombination factor protein RarA [Alteromonas macleodii ATCC
           27126]
          Length = 435

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 34/179 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + +  ++++     A +     I        E+     +N   L
Sbjct: 48  MILWGPPGTGKTTLAELIAQYTKASVLRISAVTSGVKDIRAAMDTAEENA---RYNQRTL 104

Query: 127 F-----HIINSIHQYD----------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
                 H  N   Q            + +  T              L SR++   V  + 
Sbjct: 105 LFVDEVHRFNKSQQDAFLPFVESGVVTFIGATTENPSFELNKA---LLSRVR---VYVLK 158

Query: 172 LPDDDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             + + L ++I +  +       DR + I +     +   ++ S   A +L+  ++  A
Sbjct: 159 TLEHEALSELIDRALSDTEKGLGDRALGIKETARNAL---IDLSGGDARRLLTYLELAA 214


>gi|226293403|gb|EEH48823.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 854

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 598 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 637


>gi|238506283|ref|XP_002384343.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220689056|gb|EED45407.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 961

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 41/209 (19%)

Query: 68  ILVGPSGSGKSCLANIWSD--------KSRSTRFSNIAK-----SLDSILIDTRKPVLLE 114
           +  GP G+GK+  A +++          S       ++        D IL  T    L+ 
Sbjct: 437 VFAGPPGTGKTTAAKLYAQILADLGLLSSGEVTVKPLSAFNNVSDTDDILSSTVGKALII 496

Query: 115 DIDLLDFNDTQLFHIINSIH-----------QYDSSLLMTARTFPVSWGVCLPDLC--SR 161
           D++  + +D   F + +S+            +   ++L+ +     +    LP+L   SR
Sbjct: 497 DMNTPETDDND-FQVYDSVLDMLIKELSANGENRCTILVGSDHAVDTL---LPELKEASR 552

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV-----QRMERSLVFAEKLV 216
           +    VV+      + +E++      ++ +    +     +      RM +    A  + 
Sbjct: 553 MLEHQVVRFQPLTREQMEELFQAKLQEQDVDATPEAFQAAMDILESARMRKDFDNARGI- 611

Query: 217 DKMDNLA-----LSRGMGITRSLAAEVLK 240
           +++   A       R       L+  VL+
Sbjct: 612 ERLLTAANRNFDQRRSRAPDGPLSQRVLE 640


>gi|167837525|ref|ZP_02464408.1| recombination factor protein RarA [Burkholderia thailandensis
           MSMB43]
          Length = 436

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             +D L +++ K   D     +  D K    +V   +     A + ++ ++  
Sbjct: 163 LAEDELRQLL-KRAQDTALDGLAFDGKAVDTLVGYAD---GDARRFLNLLEQA 211


>gi|225444572|ref|XP_002273189.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738493|emb|CBI27738.3| unnamed protein product [Vitis vinifera]
          Length = 425

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + V+  GP G+GK+ LA   ++++ +     I   L    +     ++
Sbjct: 200 PPKGVLFYGPPGTGKTLLARAVANRTGACFIRVIGSELVRRYVGEGARMV 249


>gi|149580085|ref|XP_001511387.1| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit
           ATPase 3, partial [Ornithorhynchus anatinus]
          Length = 324

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V++ GP G+GK+ LA   + ++++T        L  + I     ++ +
Sbjct: 92  PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRD 143


>gi|72092070|ref|XP_784405.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115940005|ref|XP_001186119.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 271

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 20/105 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G GK+ +A   +  +     +  A +L        + +           
Sbjct: 131 PPKGVLLYGPPGCGKTMIAKAIAKDAGCRFINLQASNLTDKWYGESQKLA---------- 180

Query: 123 DTQLFHII------NSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            + +F ++      N     D+++L   R  P S+ + +PD   R
Sbjct: 181 -SAVFSLVIVMGATNRPQDVDAAIL---RRMPTSFHIGMPDKAQR 221


>gi|14590135|ref|NP_142199.1| proteasome-activating nucleotidase [Pyrococcus horikoshii OT3]
 gi|20532203|sp|O57940|PAN_PYRHO RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|3256587|dbj|BAA29270.1| 399aa long hypothetical 26S protease regulatory subunit [Pyrococcus
           horikoshii OT3]
          Length = 399

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ +A   + +  +T    +   L    I     ++ E
Sbjct: 173 PPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHE 224


>gi|321264368|ref|XP_003196901.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
           1) [Cryptococcus gattii WM276]
 gi|317463379|gb|ADV25114.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein
           1), putative [Cryptococcus gattii WM276]
          Length = 627

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 33/187 (17%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSI------------LIDTRKPVLL 113
           IL GP G GK+ LA + +  S +     S  +     +            +   R  +++
Sbjct: 181 ILWGPPGCGKTTLARLIAKSSGADFKELSATSSGTQDVRQVFEKAKNGLQMTGRRTVLMI 240

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +     L        +     L+ A T   S+ V    L SR     V  +   
Sbjct: 241 DEIHRFNRAQQDLLLPY---VEKGWIQLIGATTENPSFKVNGA-LLSR---CQVFTLHAH 293

Query: 174 DDDFLEKVIVKM---FADRQIFI--DKKLAAYIVQRMERS-------LVFAEKLVDKMDN 221
             + L+ ++       ++ +       +L  ++    +         L  A +    MD 
Sbjct: 294 SPESLQIILRNAVQTISESEPIPYHPPELIPFLADVADGDARQALNGLELALRTCQTMDE 353

Query: 222 LALSRGM 228
            A +   
Sbjct: 354 AARAEKS 360


>gi|315222482|ref|ZP_07864380.1| recombination factor protein RarA [Streptococcus anginosus F0211]
 gi|315188450|gb|EFU22167.1| recombination factor protein RarA [Streptococcus anginosus F0211]
          Length = 423

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 31/197 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  ++               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLMLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                +  ++M   T    +    P + SR     + ++    +D 
Sbjct: 102 RLDKTKQDFL----LPLLENGLIIMIGATTENPFFSVTPAIRSR---VQIFELEPLTNDD 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG---- 227
           +++ I     D  R     + +D     +I               + +D   LS      
Sbjct: 155 IKQAIQTALTDTERGFDFPVQLDDDALDFITTSTN---GDLRSAFNSLDLAVLSTKEDTE 211

Query: 228 --MGITRSLAAEVLKET 242
               IT  +    L+++
Sbjct: 212 GVRHITLDIMENSLQKS 228


>gi|303388197|ref|XP_003072333.1| replication factor C large subunit [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303301472|gb|ADM10973.1| replication factor C large subunit [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 383

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 40/184 (21%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS-------- 102
            A++ +  +P    ++++L GPSG+GK+ LA + S           A +           
Sbjct: 27  DALKWLKDYPE-HGKILLLRGPSGTGKTSLAYVLSSALGFDLVEFNADNDPDWMDRMLNS 85

Query: 103 --ILIDTRKPVLLEDIDLLDFNDTQLFHIIN---SIHQYD--SSLLMTARTFPVSWGVCL 155
             I+   +  +L+++ID   F        +N    I        L+MT+         CL
Sbjct: 86  NRIINGRKNIILVDEIDGNPF--------LNVDKLISSPKLVCPLVMTSNEM------CL 131

Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
            D          V+I  P  + + + I K+  ++ I I+  +   + Q    S      +
Sbjct: 132 KD-------VYTVEIQRPGFEEVRRGIEKICKEQGISIENSI---LSQMASESGGDLRTI 181

Query: 216 VDKM 219
           ++ +
Sbjct: 182 INHL 185


>gi|251771176|gb|EES51758.1| IstB domain protein ATP-binding protein [Leptospirillum
           ferrodiazotrophum]
          Length = 251

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 20/111 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           +++ GP+G GK+ LA      +    F  +  SL+ +L                  +   
Sbjct: 103 ILIAGPTGVGKTHLACALGQAACRQGFLTLFFSLNRLLEKMALARAQGRYLSLLKKLTAA 162

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLPD 157
             ++L+D  L      QL  I + +     SL  ++T +    +W   LPD
Sbjct: 163 SVIVLDDFGLRALTPLQLQDIYDLVDGRVESLSTIVTTQLPVENWREILPD 213


>gi|255732673|ref|XP_002551260.1| vacuolar protein sorting-associated protein VPS4 [Candida
           tropicalis MYA-3404]
 gi|240131546|gb|EER31106.1| vacuolar protein sorting-associated protein VPS4 [Candida
           tropicalis MYA-3404]
          Length = 432

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 160 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 197


>gi|238898002|ref|YP_002923682.1| ATPase, chaperone subunit of serine protease [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465760|gb|ACQ67534.1| ATPase, chaperone subunit of serine protease [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 436

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 19/104 (18%)

Query: 29  FFSFPRCLGISRDDLLVH--SA---IEQAV-----RLIDSWPSWPS---RVVILVGPSGS 75
               P  +    DD ++   +A   +  AV     RL  S P         ++L+GP+GS
Sbjct: 75  ALPTPHQIRAHLDDYVIGQEAAKKVLSVAVYNHYKRLSHSIPDGVELGKSNILLIGPTGS 134

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           GK+ LA   +      RF N+  ++    + T    + ED++ +
Sbjct: 135 GKTLLAETLA------RFLNVPFTIADATVLTEAGYVGEDVENI 172


>gi|241955735|ref|XP_002420588.1| AAA ATPase involved in endosome to vacuole transport, putative;
           vacuolar protein sorting-associated protein, putative;
           vacuolar protein-targeting protein, putative [Candida
           dubliniensis CD36]
 gi|223643930|emb|CAX41667.1| AAA ATPase involved in endosome to vacuole transport, putative
           [Candida dubliniensis CD36]
          Length = 437

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 165 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202


>gi|219129570|ref|XP_002184958.1| vacuolar protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403453|gb|EEC43405.1| vacuolar protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 422

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 156 PFKGILLYGPPGTGKSYLAKAVATEADSTFFSVSSADL 193


>gi|190348793|gb|EDK41321.2| hypothetical protein PGUG_05419 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 432

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 161 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 198


>gi|153002581|ref|YP_001368262.1| sporulation domain-containing protein [Shewanella baltica OS185]
 gi|151367199|gb|ABS10199.1| Sporulation domain protein [Shewanella baltica OS185]
          Length = 483

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 81/227 (35%), Gaps = 42/227 (18%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDS 102
            + E  ++ +    S+  ++++L G SGSGK+     LA  + + + +     +      
Sbjct: 10  PSQEALIQRMHHVASYSDQLLVLSGVSGSGKTTLVTGLATDFDESNAAFVICPMHADNAE 69

Query: 103 I-----LIDTRKPVLLEDIDLLD----------------FNDTQLF--HII------NSI 133
           I     +     P+  +DI L D                 +D  L    +       N I
Sbjct: 70  IRRKILVQLISSPIFDDDIPLADTLLRLASTQTKPLHIIIDDAHLLPKALWAECIILNQI 129

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAATVVKISL---PDDDFLEKVIVKMFADR 189
                ++ +T    P      LP L  +L +    + I     P+ + L + +++     
Sbjct: 130 QCAGKNIAVTLTVPPAFLADLLPQLPEQLRRQILPISIEPLTMPEREALYQTLLRYSEQN 189

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
                + +      ++E+     +++V+ +D  AL  G   T SL  
Sbjct: 190 PFTPREIVR----SQLEKQTGTPQEVVNLLDK-ALHSGPEKTSSLVK 231


>gi|121608726|ref|YP_996533.1| recombination factor protein RarA [Verminephrobacter eiseniae
           EF01-2]
 gi|121553366|gb|ABM57515.1| Recombination protein MgsA [Verminephrobacter eiseniae EF01-2]
          Length = 452

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 20/172 (11%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
           IL GP G GK+ +A + +D   +   S  A       I           D L    T +F
Sbjct: 54  ILWGPPGVGKTTIARLMADAFDAQFISISAVLGGVKDIRAAVERAEAARDGLMQQRTIVF 113

Query: 128 ----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
               H  N           +      + A T   S+ V    L SR   ATV  +     
Sbjct: 114 VDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNSA-LLSR---ATVYVLQPLSA 169

Query: 176 DFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
             L++++    A   +  I+      +V   +     A +L++ ++ LA++ 
Sbjct: 170 QDLQQIVALAQAQHALPAIEDAAVERLVAYAD---GDARRLLNTLETLAMAA 218


>gi|50290195|ref|XP_447529.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526839|emb|CAG60466.1| unnamed protein product [Candida glabrata]
          Length = 432

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 161 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 198


>gi|50555822|ref|XP_505319.1| YALI0F12155p [Yarrowia lipolytica]
 gi|49651189|emb|CAG78126.1| YALI0F12155p [Yarrowia lipolytica]
          Length = 814

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 250 PPKGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 309

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 310 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARANIVVIAATNRPNSID-- 367

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 368 -PALR-RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLGDDV 407


>gi|146277464|ref|YP_001167623.1| ATPase central domain-containing protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555705|gb|ABP70318.1| AAA ATPase, central domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 715

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 60/197 (30%), Gaps = 55/197 (27%)

Query: 46  HSAIEQAVRLIDSWPSWPS---------RVVILVGPSGSGKSCLANI------------- 83
             A++ A RL+     W           R ++L GP G+GK+ LA               
Sbjct: 294 GEALKAARRLVADLGLWQEKKLGWNELCRSLLLFGPPGTGKTWLARAMGNSADVGFVAAS 353

Query: 84  ---W-SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIIN-------- 131
              W +        + + KS           + +E+ID +        H  N        
Sbjct: 354 FAQWQAAGHLGDMLAAMRKSFADARRQAPSILFIEEIDAVGSRLDSDRHASNYRHQVIAG 413

Query: 132 -------SIHQYDSSLLMTA----RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
                     +    ++       R  P        DL         V++ LPD+  L  
Sbjct: 414 FLEAMDSLAREEGVIVVGACNYPERIDPAVLRAGRFDLK--------VEVPLPDEAILLG 465

Query: 181 VIVKMFADRQIFIDKKL 197
           ++++    R  F D +L
Sbjct: 466 ILLRHL--RGTFTDTEL 480


>gi|117922324|ref|YP_871516.1| sporulation domain-containing protein [Shewanella sp. ANA-3]
 gi|117614656|gb|ABK50110.1| Sporulation domain protein [Shewanella sp. ANA-3]
          Length = 471

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 44/178 (24%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS---DKSRSTRF---------- 93
            + E  V  +    S+  ++++LVG  GSGK+ L    +   D+S +             
Sbjct: 10  PSQEALVERLHHVASYSDQLLVLVGAHGSGKTTLLTALATDFDESNAALVICPMHADNAE 69

Query: 94  ------------------SNIAKSLDSILIDTRKP--VLLEDIDLLDFNDTQLFH---II 130
                              ++A+++  +     KP  ++++D  LL     +L+    I+
Sbjct: 70  IRRKILVQLVSSPIFDDEISLAETILRVAPKQSKPLHIIIDDAHLLS---KELWAECIIL 126

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDL-CSRLKAATVVKISLPD----DDFLEKVIV 183
           N +      + +T    P      LP L  S  +    V I        +   + ++ 
Sbjct: 127 NQVQCAGQRIAVTLAVPPAFLADLLPQLPESLRRQILPVSIDPLSLPEREALYQTLLR 184


>gi|67483758|ref|XP_657099.1| 26S protease regulatory subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56474352|gb|EAL51726.1| 26S protease regulatory subunit, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 422

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ +A   + +++ST     A  L S  I     ++ E
Sbjct: 206 VLLYGPPGTGKTLMARACAAQTKSTFLKLAAPQLVSSSIGDGSRIIRE 253


>gi|68470534|ref|XP_720771.1| potential vacuolar sorting ATPase [Candida albicans SC5314]
 gi|46442656|gb|EAL01944.1| potential vacuolar sorting ATPase [Candida albicans SC5314]
 gi|238882705|gb|EEQ46343.1| vacuolar protein sorting-associated protein VPS4 [Candida albicans
           WO-1]
          Length = 439

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 167 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 204


>gi|68470797|ref|XP_720644.1| potential vacuolar sorting ATPase [Candida albicans SC5314]
 gi|46442522|gb|EAL01811.1| potential vacuolar sorting ATPase [Candida albicans SC5314]
          Length = 439

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 167 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 204


>gi|313677223|ref|YP_004055219.1| ATPase AAA [Marivirga tractuosa DSM 4126]
 gi|312943921|gb|ADR23111.1| AAA ATPase central domain protein [Marivirga tractuosa DSM 4126]
          Length = 425

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 18/128 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKP----VLLED 115
             +I  GP G GK+ +ANI +++ ++     +  S   K +  ++    +     + +++
Sbjct: 44  PSMIFWGPPGVGKTTIANIIANQVKAPFQTLSAISAGVKDVREVIQRASRSGKIILFIDE 103

Query: 116 IDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           I   + +    L        +     L+ A T   S+ V    L SR     V  +   +
Sbjct: 104 IHRFNKSQQDALL----GAVEKGVITLIGATTENPSFEVNSA-LLSR---CQVYTLKALE 155

Query: 175 DDFLEKVI 182
            + L+ ++
Sbjct: 156 LEDLKGLL 163


>gi|238023325|ref|YP_002907558.1| hypothetical protein bglu_2p0410 [Burkholderia glumae BGR1]
 gi|237880378|gb|ACR32708.1| Hypothetical protein bglu_2p0410 [Burkholderia glumae BGR1]
          Length = 1480

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 1/96 (1%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           +LL        V   + W    +R +++VG +GSGKS L               +     
Sbjct: 304 NLLNALRNAARVVRAEHWERLETRALLVVGDAGSGKSHLLADACSHQIENGRPAVMVLGG 363

Query: 102 SILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136
            +        +L D+DL       Q    +N+  + 
Sbjct: 364 KLPDAEPWGEILRDLDLPRHLQVKQFLGALNAAGEA 399


>gi|295674557|ref|XP_002797824.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280474|gb|EEH36040.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis
           Pb01]
          Length = 746

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 522 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 567



 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  +  
Sbjct: 240 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEA 296


>gi|225684013|gb|EEH22297.1| katanin p60 ATPase-containing subunit [Paracoccidioides
           brasiliensis Pb03]
          Length = 854

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 598 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 637


>gi|206589175|emb|CAQ36137.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2]
          Length = 1186

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51   QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
             ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 989  ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 1043

Query: 111  -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                               +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 1044 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 1101

Query: 148  PVSWGVCLPD 157
               W     D
Sbjct: 1102 FTQWATAFAD 1111


>gi|292627082|ref|XP_690329.4| PREDICTED: fidgetin [Danio rerio]
          Length = 684

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 29/166 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + ++L GP G GK+ LA   S +  ++ +     +L S L    + +L          
Sbjct: 457 PPKTILLFGPQGGGKTTLARSLSSQIGASFYRLSCATLASKLKGEAEQLLLTLFSVATAR 516

Query: 113 ---------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC--SR 161
                    +E I+           +    H   +  L+   T         PDL   S 
Sbjct: 517 QPAMVLLSEVEAIEEEGLRQQLQAQLEKIQHNQSNQFLVVCTT-------RRPDLIKDSL 569

Query: 162 LK-AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
           L+  +    I LPD +    V+++  A +   + ++  + ++QR E
Sbjct: 570 LRCFSKRYHIGLPDGNTRRHVLLQALAPQGCSLSERELSAVLQRSE 615


>gi|126454407|ref|YP_001067279.1| recombination factor protein RarA [Burkholderia pseudomallei 1106a]
 gi|167720767|ref|ZP_02404003.1| recombination factor protein RarA [Burkholderia pseudomallei DM98]
 gi|167739751|ref|ZP_02412525.1| recombination factor protein RarA [Burkholderia pseudomallei 14]
 gi|167825381|ref|ZP_02456852.1| recombination factor protein RarA [Burkholderia pseudomallei 9]
 gi|167851463|ref|ZP_02476971.1| recombination factor protein RarA [Burkholderia pseudomallei B7210]
 gi|167895448|ref|ZP_02482850.1| recombination factor protein RarA [Burkholderia pseudomallei 7894]
 gi|167903834|ref|ZP_02491039.1| recombination factor protein RarA [Burkholderia pseudomallei NCTC
           13177]
 gi|167912100|ref|ZP_02499191.1| recombination factor protein RarA [Burkholderia pseudomallei 112]
 gi|167920074|ref|ZP_02507165.1| recombination factor protein RarA [Burkholderia pseudomallei
           BCC215]
 gi|217421197|ref|ZP_03452702.1| ATPase, AAA family [Burkholderia pseudomallei 576]
 gi|237813404|ref|YP_002897855.1| recombination factor protein RarA [Burkholderia pseudomallei
           MSHR346]
 gi|242315892|ref|ZP_04814908.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1106b]
 gi|126228049|gb|ABN91589.1| ATPase, AAA family [Burkholderia pseudomallei 1106a]
 gi|217396609|gb|EEC36626.1| ATPase, AAA family [Burkholderia pseudomallei 576]
 gi|237506600|gb|ACQ98918.1| recombination factor protein RarA [Burkholderia pseudomallei
           MSHR346]
 gi|242139131|gb|EES25533.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1106b]
          Length = 436

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             +D L +++ K   D     +  D K    +V   +     A + ++ ++  
Sbjct: 163 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211


>gi|125972706|ref|YP_001036616.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum ATCC
           27405]
 gi|256004865|ref|ZP_05429839.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM
           2360]
 gi|281416894|ref|ZP_06247914.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum JW20]
 gi|166231487|sp|A3DBU4|RUVB_CLOTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|125712931|gb|ABN51423.1| Holliday junction DNA helicase subunit RuvB [Clostridium
           thermocellum ATCC 27405]
 gi|255991175|gb|EEU01283.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM
           2360]
 gi|281408296|gb|EFB38554.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum JW20]
 gi|316941058|gb|ADU75092.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM
           1313]
          Length = 330

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 29/202 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I + +           +++           L + D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLAGIIASELGVNLRITSGPAIEKPGDLAAILTNLGNFDVLFIDEI-- 112

Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD---------------LCS--RL 162
            H +N   +        D +L +     P +  + L D               L S  R 
Sbjct: 113 -HRLNRSVEEILYPAMEDYALDIIIGKGPSARSIRL-DLPKFTLIGATTRAGLLTSPLRD 170

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DN 221
           +   + K+ L   + L +++ +      + I+ + A  I +R   +   A +++ ++ D 
Sbjct: 171 RFGVINKLELYSVEELGQIVKRSARILNVGIEDEAAEEIARRARGTPRVANRILKRIRDF 230

Query: 222 LALSRGMGITRSLAAEVLKETQ 243
             +     IT+ +A   L+  +
Sbjct: 231 AQVKSDGFITKEIARTGLEALE 252


>gi|302143952|emb|CBI23057.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 37/143 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P + V+L GP G+GK+ LA   + +S +   +                 +A         
Sbjct: 115 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 174

Query: 107 TRKPVLLEDIDLLDFNDT---------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
               + ++++D                       L+    +  Q    +++ A   P   
Sbjct: 175 QPAIIFIDEVDTFLGQRRTTDHEAMANMKTEFMALWDGF-TTDQNARVMVLAATNRPSEL 233

Query: 152 GVCLPDLCSRLKAATVVKISLPD 174
              +  L  RL  A   +I +PD
Sbjct: 234 DEAI--LR-RLPQA--FEIGIPD 251


>gi|257053680|ref|YP_003131513.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM
           12940]
 gi|256692443|gb|ACV12780.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM
           12940]
          Length = 742

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 61/163 (37%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P   V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 222 PPSGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEE 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ +      +++ A     S    
Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLESRGQVVVIAATNRVDS---V 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD+   E+++      R + +   +
Sbjct: 339 DPALRRPGRFDREIEIGVPDETGREEIL--KIHTRGMPLSDDV 379



 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   V+L GP G+GK+ +A   ++++ +   S
Sbjct: 495 PPSGVLLYGPPGTGKTLMAKAVANETDANFIS 526


>gi|224157403|ref|XP_002195915.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 6,
           partial [Taeniopygia guttata]
          Length = 165

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 80  PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 131

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 132 ------MFNYARDHQ 140


>gi|171186425|ref|YP_001795344.1| AAA family ATPase, CDC48 subfamily protein [Thermoproteus
           neutrophilus V24Sta]
 gi|170935637|gb|ACB40898.1| AAA family ATPase, CDC48 subfamily [Thermoproteus neutrophilus
           V24Sta]
          Length = 731

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + ++L+GP G+GK+ LA   ++++ +              +      L  I  + +  
Sbjct: 212 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 271

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 272 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVVVIGATNRPDA---V 328

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    + I+ PD     +++  +   R + +   +
Sbjct: 329 DPALRRPGRFDREIWINPPDFKGRYEIL--LIHTRNMPLAPDV 369



 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + ++L GP G+GK+ LA   + +S +   +     +                    + 
Sbjct: 487 PPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMA 546

Query: 107 TRKPVLLEDIDLLD 120
               + +++ID L 
Sbjct: 547 APAVIFIDEIDALA 560


>gi|146416793|ref|XP_001484366.1| hypothetical protein PGUG_03747 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 572

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 38/185 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS---------LDSILIDTRK------ 109
             +IL GP G GK+ LA+I + ++        A           L+ I  + RK      
Sbjct: 122 PSMILHGPPGVGKTTLASIIAKEAGYVMVELSATDATVSTIRRLLNEIRDENRKRTKLGT 181

Query: 110 -----PVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
                 V +++I                  +    + + A TF  +  +  P + SR   
Sbjct: 182 PHLRVCVFIDEIHRFSKVQQDFLLPF---VEEGLFVFLGATTFNPATRLR-PAIRSR--- 234

Query: 165 ATVVKISLPDDDFLEKVIVKMF-----ADR------QIFIDKKLAAYIVQRMERSLVFAE 213
             + K++    D ++ V+ K         R       +    ++  +I+   +     A 
Sbjct: 235 CQLFKLNELTKDEVKSVLKKAALYENVRRRIVYGKQFLSFSSEVLNHIINTCKGDARSAV 294

Query: 214 KLVDK 218
            +++ 
Sbjct: 295 NMIEM 299


>gi|91793101|ref|YP_562752.1| recombination factor protein RarA [Shewanella denitrificans OS217]
 gi|91715103|gb|ABE55029.1| Recombination protein MgsA [Shewanella denitrificans OS217]
          Length = 443

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 74/196 (37%), Gaps = 33/196 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++L GP G+GK+ LA + +  + +   R S ++  +  I     +   +          T
Sbjct: 52  MLLWGPPGTGKTTLAELIAHYANAHVERISAVSSGVKDIRAAIEQAKAV---AQSRGQRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +++    T              L SR   A V  I
Sbjct: 109 LLFVDEVHRFNKSQQDAFLPYIEDGTVIFVGATTENPSFELNNA---LLSR---ARVYLI 162

Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               +  + ++I++   D       RQ+ I  ++ A +    +     A  L++ M +L 
Sbjct: 163 HKLTETEITEIIIQALEDTERGLGKRQLIIPPEVMAELTHVSDGDARKALNLIELMSDL- 221

Query: 224 LSRGMGITRSLAAEVL 239
           ++ G  +   + ++V+
Sbjct: 222 VADGDAVNLEMLSQVV 237


>gi|85057871|ref|YP_456787.1| cell division protein ftsH-like protein [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|123725332|sp|Q2NIN5|FTSH_AYWBP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|84789976|gb|ABC65708.1| cell division protein ftsH homolog [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 676

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   + ++    F+      D + +      + +
Sbjct: 208 VLLYGPPGTGKTLLAKAVAGEAGVPFFAASGSDFDEVYVGVGASRVRD 255


>gi|68076831|ref|XP_680335.1| 26S proteasome regulatory subunit 7 [Plasmodium berghei strain
           ANKA]
 gi|56501247|emb|CAH95167.1| 26S proteasome regulatory subunit 7, putative [Plasmodium berghei]
          Length = 420

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 195 PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRE 246


>gi|70941981|ref|XP_741212.1| 26S proteasome regulatory subunit 7 [Plasmodium chabaudi chabaudi]
 gi|56519448|emb|CAH83988.1| 26S proteasome regulatory subunit 7, putative [Plasmodium chabaudi
           chabaudi]
          Length = 295

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 70  PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRE 121


>gi|39938616|ref|NP_950382.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721725|dbj|BAD04215.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 674

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   + ++    F+      D + +      + +
Sbjct: 208 VLLYGPPGTGKTLLAKAVAGEAGVPFFAASGSDFDEVYVGVGASRVRD 255


>gi|83315300|ref|XP_730734.1| 26S proteasome subunit P45 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490548|gb|EAA22299.1| 26S proteasome subunit P45 family, putative [Plasmodium yoelii
           yoelii]
          Length = 475

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 225 PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRE 276


>gi|329965400|ref|ZP_08302324.1| ATPase, AAA family [Bacteroides fluxus YIT 12057]
 gi|328522192|gb|EGF49306.1| ATPase, AAA family [Bacteroides fluxus YIT 12057]
          Length = 423

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 34/174 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI------------LIDTRKPVL 112
            IL GP G GK+ LA I ++K  +     S +   +  +               +   + 
Sbjct: 41  FILWGPPGVGKTTLAQIIANKLDTPFYTLSAVTSGVKDVRDVIERAKSNRFFSQSSPILF 100

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +  +  L+ A T   S+ V  P L SR     +  + 
Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEQGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152

Query: 172 LPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             + D L++++ +         +R+I +++  A      +  S   A KL++ +
Sbjct: 153 SLEKDDLQELLQRAITTDIVLKERKIELEETTAM-----LRYSGGDARKLLNIL 201


>gi|313237262|emb|CBY19901.1| unnamed protein product [Oikopleura dioica]
          Length = 690

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 15/75 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           PS V+ L GP G GK+ LA   +++S     S     L ++               +  +
Sbjct: 461 PSGVL-LTGPPGCGKTLLAKAIANESGLNFISVKGPELLNMY--------------VGES 505

Query: 123 DTQLFHIINSIHQYD 137
           +  +  + N      
Sbjct: 506 ERAVRSVFNRARSSK 520


>gi|320106653|ref|YP_004182243.1| AAA ATPase central domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319925174|gb|ADV82249.1| AAA ATPase central domain protein [Terriglobus saanensis SP1PR4]
          Length = 445

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 28/196 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121
           +I  GP G+GK+ LA I +  ++++     A     K +  +++D  K   +    +L  
Sbjct: 60  MIFWGPPGTGKTTLAKIVARMTQASFIEFSAVMSGIKEIKQVMVDAEKAAAMGSRTILFI 119

Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++    H  N           +  +  L+ A T   S+ +    L SR     V  +   
Sbjct: 120 DEI---HRFNKAQQDAFLPYVERGTLRLIGATTENPSFEINAA-LLSR---CRVYTLRGL 172

Query: 174 DDDFLEKVIVKMFAD--RQIFI-----DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
            +  +  ++ +  AD  R +        +     I         +A   ++    +A +R
Sbjct: 173 SESEVIVLMQRALADEERGLGAMHLGTAEGSLEMIASYASGDARYALNALEMATRIASAR 232

Query: 227 G-MGITRSLAAEVLKE 241
           G   +T+    E L++
Sbjct: 233 GDGALTKETVGEALQQ 248


>gi|296220658|ref|XP_002756429.1| PREDICTED: 26S protease regulatory subunit S10B-like [Callithrix
           jacchus]
          Length = 442

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 219 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESAHLIRE-------- 270

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 271 ------MFNYARDHQ 279


>gi|238926807|ref|ZP_04658567.1| crossover junction endoribonuclease subunit B [Selenomonas flueggei
           ATCC 43531]
 gi|238885339|gb|EEQ48977.1| crossover junction endoribonuclease subunit B [Selenomonas flueggei
           ATCC 43531]
          Length = 345

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 72/183 (39%), Gaps = 15/183 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-Q 125
           V+L GP G GK+ LA I +++  +      A +++           L++ D+L  ++  +
Sbjct: 60  VLLYGPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQEHDVLFIDEIHR 119

Query: 126 LFH-----IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
           L H     + +++  +   +++     P +  + L DL          K        L  
Sbjct: 120 LSHHVEEILYSAMEDHAIDIII--GKGPSARSIRL-DLAPFTLVGATTKTGS-----LSA 171

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +   F   Q  ++      ++  +ER+       +++   L ++R    T  +A  +LK
Sbjct: 172 PLRDRFGI-QARLEYYTTDALLLIIERTAEILSVHIERDGALEIARRSRGTPRVANRILK 230

Query: 241 ETQ 243
             +
Sbjct: 231 RVR 233


>gi|229559938|sp|Q7QBW0|SPAST_ANOGA RecName: Full=Spastin
          Length = 778

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T FS  A +L S  +   + ++
Sbjct: 535 PAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLV 584


>gi|242012196|ref|XP_002426821.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212511028|gb|EEB14083.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 502

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D +L+    
Sbjct: 108 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 150


>gi|169831005|ref|YP_001716987.1| vesicle-fusing ATPase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637849|gb|ACA59355.1| Vesicle-fusing ATPase [Candidatus Desulforudis audaxviator MP104C]
          Length = 491

 Score = 40.5 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           P + ++L GP G+GK+ LA   ++ + +   S        +      
Sbjct: 96  PLKGILLTGPPGTGKTLLARAAANYTDAVFISASGSEFIEMYAGVGA 142


>gi|330835879|ref|YP_004410607.1| proteasome-activating nucleotidase [Metallosphaera cuprina Ar-4]
 gi|329568018|gb|AEB96123.1| proteasome-activating nucleotidase [Metallosphaera cuprina Ar-4]
          Length = 391

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +S++     +A       +     V+ +
Sbjct: 166 PPKGVLLYGPPGTGKTMLAKAVATESKAAFIHVVASEFAQKFVGEGARVVRD 217


>gi|327189703|gb|EGE56850.1| putative ATPase protein [Rhizobium etli CNPAF512]
          Length = 438

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 69/188 (36%), Gaps = 31/188 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111
           R+I+   S     +I  GP G+GK+ +A + S ++     + S I   +  +        
Sbjct: 47  RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFETA- 102

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
               +  +D   T LF    H  N           +  + +L+  T              
Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215
           L SR   A V+     D+  LE+++ +  A  Q  + + ++  A +++  +        L
Sbjct: 157 LLSR---ARVLTFKSHDEQSLEELLKRAEAIEQKPLPLTEEARASLIRMADGDGRAVLTL 213

Query: 216 VDKMDNLA 223
            +++   A
Sbjct: 214 AEEVWRAA 221


>gi|325276869|ref|ZP_08142564.1| AFG1-family ATPase [Pseudomonas sp. TJI-51]
 gi|324097998|gb|EGB96149.1| AFG1-family ATPase [Pseudomonas sp. TJI-51]
          Length = 358

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 23/110 (20%)

Query: 65  RVVILVGPSGSGKSCL----------------------ANIWSDKSRSTRFSNIAKSLDS 102
           R + L G  G GKS L                      A +     R     +   +   
Sbjct: 65  RSLYLYGSVGRGKSWLLDGFYQAVPVEAKKRLHFHDFFARLHQGMHRHRALDDALGATLD 124

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151
            LI   + +  ++  + D  D  L   + N++      LL+T+   P   
Sbjct: 125 ELIGDCRVLCFDEFHVHDIGDAMLLTRLFNALFSRGVFLLVTSNYAPEGL 174


>gi|325967941|ref|YP_004244133.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707144|gb|ADY00631.1| AAA family ATPase, possible cell division control protein cdc48
           [Vulcanisaeta moutnovskia 768-28]
          Length = 748

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 28/114 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L+GP G+GK+ LA   + ++ +   S     +                +    +
Sbjct: 214 PPKGVLLIGPPGTGKTLLAKAVASEANAYFVSINGPEIMSKYYGESEAKLREIFEEAKKN 273

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP 148
               + +++ID +                 QL  +++ + +    +++ A   P
Sbjct: 274 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRP 327



 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + +S +   +
Sbjct: 503 PPKGILLFGPPGTGKTLLAKAVATESNANFIA 534


>gi|330924950|ref|XP_003300847.1| hypothetical protein PTT_12208 [Pyrenophora teres f. teres 0-1]
 gi|311324808|gb|EFQ91051.1| hypothetical protein PTT_12208 [Pyrenophora teres f. teres 0-1]
          Length = 819

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 254 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 313

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 314 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 373

Query: 155 L 155
           L
Sbjct: 374 L 374



 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PSR V+  GP G+GK+ LA   +++  +                   SNI    D     
Sbjct: 528 PSRGVLFYGPPGTGKTLLAKAVANECAANFISIKGPELLSMWFGESESNIRDIFDKARAA 587

Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
               V L+++D +  +                 QL   ++ +    +  ++ A   P   
Sbjct: 588 APCVVFLDELDSIAKSRGGSQGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 647

Query: 152 G--------------VCLPDLCSR 161
                          V LPDL SR
Sbjct: 648 DNALCRPGRLDTLVYVPLPDLASR 671


>gi|291485161|dbj|BAI86236.1| recombination factor protein RarA [Bacillus subtilis subsp. natto
           BEST195]
          Length = 421

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  +        +      ++        +  +  ++L+++ 
Sbjct: 41  MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD              +    +L+ A T      +  P + SR     + ++     D 
Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPDL 153

Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
           +++ + +   D  R +      ID +   +               ++ ++   LS     
Sbjct: 154 IKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCG---GDVRSALNALELAVLSTKESA 210

Query: 230 -----ITRSLAAEVLKE 241
                IT   A E L++
Sbjct: 211 DGEIHITLETAEECLQK 227


>gi|238920372|ref|YP_002933887.1| recombination factor protein RarA [Edwardsiella ictaluri 93-146]
 gi|238869941|gb|ACR69652.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 447

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 36/198 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +    +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAELIARYGHAEVERISAVTSGIKEIREAIERA----RHNRDAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              D   + +V+ +   DR+       + +  +    + + +      A   ++ M ++A
Sbjct: 163 KALDAQDIVQVVRQAMTDRERGYGGQDVTLPTETLDALAELVNGDARRALNTLEMMADMA 222

Query: 224 ---LSRGMGITRSLAAEV 238
                    +T  L   V
Sbjct: 223 ETDAQGQRVLTLDLLRSV 240


>gi|257388390|ref|YP_003178163.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
 gi|257170697|gb|ACV48456.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
          Length = 703

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 65/200 (32%), Gaps = 48/200 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID---------------- 106
           P   V+L GP G+GK+ LA   + +S           L    +                 
Sbjct: 485 PPSGVLLYGPPGTGKTLLARAIAGESGVNFIHVNGPELLDRYVGESEESVREMFERARQT 544

Query: 107 TRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
               V L++ID +               +QL   ++ I +  + +++ A     +    L
Sbjct: 545 APSIVFLDEIDAVAGQRGESNEVSERVVSQLLTELDGITENPNLVVLAATNRRETLDDAL 604

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL--------------AAY 200
             L   R +    V++  PD     +++    AD+ +     L                 
Sbjct: 605 --LRPGRFE--QHVEVPNPDRAARREILAVHTADKPLGDGVDLDGLAAQTEGYSGAQIEA 660

Query: 201 IVQRMERSLVFAEKLVDKMD 220
           +V+  E S+     + D +D
Sbjct: 661 LVR--EASMRAIRAVADDID 678



 Score = 35.9 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 59/165 (35%), Gaps = 38/165 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST----------------RFSNIAKSLDSILID 106
           P   V+L GP G+GK+ +A   +++  +                     + ++ +    +
Sbjct: 228 PPSGVLLHGPPGTGKTLIARAVANEVDAYFDTISGPEIVSKYKGESEERLREAFERAEDN 287

Query: 107 TRKPVLLEDIDLLDF--NDTQ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
               + +++ID +    ++           L  +++ +      +++ A     +    L
Sbjct: 288 APSILFIDEIDSIAGSRDEDADMENRVVAQLLTLMDGLEDRGRVVVIGATNRVDTIDDAL 347

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                  +       ++I +PD+    +++      R++ ID  +
Sbjct: 348 R------RGGRFDREIEIGVPDEPGRREILDVHT--REMPIDDDI 384


>gi|254489705|ref|ZP_05102901.1| ATPase, AAA family protein [Methylophaga thiooxidans DMS010]
 gi|224465114|gb|EEF81367.1| ATPase, AAA family protein [Methylophaga thiooxydans DMS010]
          Length = 441

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 29/198 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA + +    +     S +   +  +     +    + +       T
Sbjct: 52  MIFWGPPGTGKTTLAKLIAGYCDAEFMTISAVLAGVKEVRAAVARA---QQLQQEQGRRT 108

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  +   + A T   S+ +    L SR   A V  +  
Sbjct: 109 MLFVDEVHRFNKSQQDAFLPYVEDGTFTFIGATTENPSFELNNA-LLSR---ARVYVLKS 164

Query: 173 PDDDFLEKVIVKM-------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVD-KMDNLAL 224
            +   L ++I +         A+R I I  +L   + Q  +        L++  +D    
Sbjct: 165 LETTDLRQIIDRAMSNAELGLAERGIAIADELRDQLAQTADGDGRRVLNLLEIAIDLADS 224

Query: 225 SRGMGITRSLAAEVLKET 242
                +  +  AEVL  T
Sbjct: 225 KGQAKVDETDLAEVLSGT 242


>gi|218295182|ref|ZP_03496018.1| Holliday junction DNA helicase RuvB [Thermus aquaticus Y51MC23]
 gi|218244385|gb|EED10910.1| Holliday junction DNA helicase RuvB [Thermus aquaticus Y51MC23]
          Length = 323

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 76/206 (36%), Gaps = 30/206 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113
           P   ++L GP G GK+ LA++ + +           +        ++ +  ++    + +
Sbjct: 38  PLEHLLLFGPPGLGKTTLAHVIAYELGVNIRTTSGPAIEKPGDLAAILANSLEEGDILFI 97

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157
           ++I  L     +  H+  ++  +   +++       +  + LP                 
Sbjct: 98  DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTVRLELPRFTLIGATTRPGLITAP 155

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      ++     ++ +E V  +      + I ++ A  I +R   ++  A++L  
Sbjct: 156 LRSRFGIVEHLEYYTL-EELMEGV-KRDARLLGVGITEEAAREIAKRSRGTMRIAKRLFR 213

Query: 218 KM-DNLALSRGMGITRSLAAEVLKET 242
           ++ D   ++    IT   A E L   
Sbjct: 214 RVRDFAQVAGEEVITGERAKEALNAL 239


>gi|159025964|emb|CAO88754.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 614

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA   + ++R+   S     L S  +   +  + E
Sbjct: 397 ILLWGPPGTGKTLLAKAVASQARANFISINGPELLSKWVGASEQAVRE 444



 Score = 36.7 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P+R V+LVGP G+GK+  A   +++      +               + L  I     K 
Sbjct: 127 PTRGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVISKYYGEAEQKLRGIFEKASKN 186

Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +  +              QL  +++   Q    +++ A   P      
Sbjct: 187 APCIVFIDEIDSMAPDRSKVEGEVEKRLVAQLLGLMDGFAQSQGVIVLAATNRPDHLDPA 246

Query: 155 L 155
           L
Sbjct: 247 L 247


>gi|149185471|ref|ZP_01863787.1| Cell division cycle protein [Erythrobacter sp. SD-21]
 gi|148830691|gb|EDL49126.1| Cell division cycle protein [Erythrobacter sp. SD-21]
          Length = 774

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ LA   +++S +  F                  + +  +     
Sbjct: 241 PPKGVLLHGPPGTGKTRLAQAVANESDAEFFTINGPEIMGSGYGESEKALREVFEQATKA 300

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + +++ A   P +    
Sbjct: 301 SPAIIFIDEIDSIAPKRDRVPGEAEKRLVAQLLTLMDGLEARSNLVVIAATNRPEAIDEA 360

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R     VV +  PD+    +++      R + +  K+
Sbjct: 361 LRR-PGRFDREIVVGV--PDEKGRREIL--GIHTRGMPLGDKV 398


>gi|145239089|ref|XP_001392191.1| hypothetical protein ANI_1_94074 [Aspergillus niger CBS 513.88]
 gi|134076694|emb|CAK45225.1| unnamed protein product [Aspergillus niger]
          Length = 736

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 513 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 558



 Score = 36.3 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P R V+L GP G GK+ +AN ++ +  
Sbjct: 202 PPRGVLLHGPPGCGKTMIANAFAAELG 228


>gi|308801567|ref|XP_003078097.1| AAA+-type ATPase (ISS) [Ostreococcus tauri]
 gi|116056548|emb|CAL52837.1| AAA+-type ATPase (ISS) [Ostreococcus tauri]
          Length = 711

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P++ V+L GP G+GK+ LA   + +S +   +  + +L
Sbjct: 426 PAKGVLLYGPPGTGKTLLAKALAKESGACFINVRSSTL 463


>gi|50285721|ref|XP_445289.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524593|emb|CAG58195.1| unnamed protein product [Candida glabrata]
          Length = 771

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 32/154 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P + +++ GP G+GK+ L    ++ S +   S    S+ S  +   +             
Sbjct: 269 PPKGILMHGPPGTGKTMLLRCVANASNAHVLSIDGPSIVSKYLGETESKLREIFNEAKKY 328

Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID +  N                L  +++         ++ A   P +   
Sbjct: 329 QPAIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGTSSSGRIAVIAATNRPNA--- 385

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
             P L    +    ++I +PD D    ++ K F 
Sbjct: 386 VDPALRRPGRFDQEIEIGIPDVDARFDILKKQFE 419


>gi|162606466|ref|XP_001713263.1| 26S proteasome AAA-ATPase subunit [Guillardia theta]
 gi|12580729|emb|CAC27047.1| 26S proteasome AAA-ATPase subunit [Guillardia theta]
          Length = 391

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   + K+++         L    +     ++ +
Sbjct: 169 PPKGVILYGEPGTGKTLLAKAIASKTKANFIKITGSELVQKFLGEGPRLVRD 220


>gi|332158359|ref|YP_004423638.1| proteasome-activating nucleotidase [Pyrococcus sp. NA2]
 gi|331033822|gb|AEC51634.1| proteasome-activating nucleotidase [Pyrococcus sp. NA2]
          Length = 396

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ +A   + +  +T    +   L    I     ++ E
Sbjct: 170 PPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHE 221


>gi|326519767|dbj|BAK00256.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 347

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++          
Sbjct: 120 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 179

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID +                  L  ++N      +     ++ A   P   
Sbjct: 180 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 239

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L   RL     ++I LP++    +V+    A             I +  E    
Sbjct: 240 DPAL--LRPGRLD--RKIEIPLPNEQSRTEVLKIHAAG------------IAKHGEIDYE 283

Query: 211 FAEKLVDKMDNLALSR 226
              KL +  +   L  
Sbjct: 284 AVVKLAEGFNGADLRN 299


>gi|293571361|ref|ZP_06682392.1| ATPase, AAA family [Enterococcus faecium E980]
 gi|291608577|gb|EFF37868.1| ATPase, AAA family [Enterococcus faecium E980]
          Length = 427

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 24/172 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +  + R  N A           +   +     +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +L+ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLIE 152

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAY---IVQRMERSLV-FAEKLVDKMDNLA 223
             ++  +     D++  + ++        +  + R+        ++ ++  A
Sbjct: 153 QDIQLAVEHALKDKERGLSQQAIQLDEEALLHLSRATNGDLRSALNGLELAA 204


>gi|16079807|ref|NP_390631.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310690|ref|ZP_03592537.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315014|ref|ZP_03596819.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319935|ref|ZP_03601229.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324216|ref|ZP_03605510.1| recombination factor protein RarA [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81555984|sp|O34528|YRVN_BACSU RecName: Full=Uncharacterized AAA domain-containing protein YrvN
 gi|2635199|emb|CAB14695.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 421

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  +        +      ++        +  +  ++L+++ 
Sbjct: 41  MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD              +    +L+ A T      +  P + SR     + ++     + 
Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPEL 153

Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
           +++ + +   D  R +      ID +   +               ++ ++   LS     
Sbjct: 154 IKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCG---GDVRSALNALELAVLSTKESA 210

Query: 230 -----ITRSLAAEVLKE 241
                IT   A E L++
Sbjct: 211 DGEIHITLETAEECLQK 227


>gi|225717030|gb|ACO14361.1| 26S protease regulatory subunit S10B [Esox lucius]
          Length = 389

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|222102324|ref|YP_002546914.1| IstB-like ATP-binding protein [Agrobacterium radiobacter K84]
 gi|221728441|gb|ACM31450.1| IstB-like ATP-binding protein [Agrobacterium radiobacter K84]
          Length = 244

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI---DTRKPVLL 113
            R V+LVG +G+GKS LA   +        + R     ++   L++        R    L
Sbjct: 98  QRNVVLVGGTGTGKSHLAIAIARALIRNSTRGRFFNVVDLVNRLETETRNGKQGRTADYL 157

Query: 114 EDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
             +D +  ++             LFH+I+ +++  +S+++T       W 
Sbjct: 158 TRLDFIILDELGYLPFAQAGGQLLFHLISRLYER-TSIIVTTNLAFGEWP 206


>gi|187778349|ref|ZP_02994822.1| hypothetical protein CLOSPO_01941 [Clostridium sporogenes ATCC
           15579]
 gi|187771974|gb|EDU35776.1| hypothetical protein CLOSPO_01941 [Clostridium sporogenes ATCC
           15579]
          Length = 342

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+  GP G GK+ LANI +++           +++           L D D+L  ++   
Sbjct: 55  VLFYGPPGLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 113 -HRLNRSIEE 121


>gi|160885966|ref|ZP_02066969.1| hypothetical protein BACOVA_03971 [Bacteroides ovatus ATCC 8483]
 gi|156108779|gb|EDO10524.1| hypothetical protein BACOVA_03971 [Bacteroides ovatus ATCC 8483]
          Length = 423

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 34/174 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI------------LIDTRKPVL 112
            IL GP G GK+ LA I ++K  +     S +   +  +               +   + 
Sbjct: 41  FILWGPPGVGKTTLAQIIANKLETPFYTLSAVTSGVKDVREVIDRAKSNRFFSQSSPILF 100

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +  +  L+ A T   S+ V  P L SR     +  + 
Sbjct: 101 IDEIHRFSKSQQDSLL----GAVENGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152

Query: 172 LPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             + + L++++ +         +R+I + +  A   + R   S   A KL++ +
Sbjct: 153 SLEKEDLQELLQRAITTDAILKERKIELKETTA---MLRF--SGGDARKLLNIL 201


>gi|15221721|ref|NP_173839.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|2829884|gb|AAC00592.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332192391|gb|AEE30512.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
          Length = 525

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 25/174 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-- 122
             ++  GP G+GK+ +A    + S+                       +E    L+    
Sbjct: 138 PSIVFWGPPGTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGR 197

Query: 123 -DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N         + +  S L + A T   S+ +  P L SR     V+ 
Sbjct: 198 KRTVLFMDEVHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITP-LLSR---CRVLT 253

Query: 170 ISLPDDDFLEKVIVKMFAD--RQI----FIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++    + +E ++ +   D  R +     +D  +  ++    +     A   ++
Sbjct: 254 LNPLKPNHVETLLRRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNALE 307


>gi|297826199|ref|XP_002880982.1| hypothetical protein ARALYDRAFT_481753 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326821|gb|EFH57241.1| hypothetical protein ARALYDRAFT_481753 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 435

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R  +L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDL 201


>gi|262373850|ref|ZP_06067128.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262311603|gb|EEY92689.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 424

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 71/192 (36%), Gaps = 34/192 (17%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSI 103
                ++ID         +I  GP G GK+ +A + +        S  A       L  +
Sbjct: 30  NAPLRQMIDQ---GHLPSIIFWGPPGVGKTTIALLLAQAVDRPFISLSALNTGVKELREV 86

Query: 104 LIDTRKP----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
           + ++       V +++I   + +      ++N++ +     L+ A T   S+ V    L 
Sbjct: 87  IAESGDLLTPVVFIDEIHRFNKSQQD--ALLNAV-EKGKITLIGATTENPSFEVNSA-LL 142

Query: 160 SRLKAATVVKISLPDDDFLEKVI------VKMFADRQIFID--KKLAAYIVQRMERSLVF 211
           SR     V  ++  D D ++ +I       K   +R I ++    L  +           
Sbjct: 143 SR---CQVYTLNSLDADAIQTLINKAIQSDKFLKERFIQVEEYDALIQFAA-------GD 192

Query: 212 AEKLVDKMDNLA 223
           A K ++ +D +A
Sbjct: 193 ARKALNLIDLIA 204


>gi|325981072|ref|YP_004293474.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325981300|ref|YP_004293702.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325982148|ref|YP_004294550.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325982571|ref|YP_004294973.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325983040|ref|YP_004295442.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325983211|ref|YP_004295613.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325983684|ref|YP_004296086.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas
           sp. AL212]
 gi|325530591|gb|ADZ25312.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
 gi|325530819|gb|ADZ25540.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
 gi|325531667|gb|ADZ26388.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
 gi|325532090|gb|ADZ26811.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
 gi|325532559|gb|ADZ27280.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
 gi|325532730|gb|ADZ27451.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
 gi|325533203|gb|ADZ27924.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212]
          Length = 260

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 30/128 (23%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-- 110
           +  I+   +     ++L+GPSG GKS LA   +  +          +   +++       
Sbjct: 95  LAFIERTEN-----IVLLGPSGVGKSHLAIALAYSAIMRGIKVRFITAADLMLQLATAKK 149

Query: 111 -----------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPV 149
                            +++++I  L F   +  LF   N I       S+++T+     
Sbjct: 150 QGRLDTYLKRSVLSPKLLVIDEIGYLPFGREEANLF--FNVIAKRYEQGSVIVTSNLPFS 207

Query: 150 SWGVCLPD 157
            W     D
Sbjct: 208 QWSTAFAD 215


>gi|229829131|ref|ZP_04455200.1| hypothetical protein GCWU000342_01216 [Shuttleworthia satelles DSM
           14600]
 gi|229792294|gb|EEP28408.1| hypothetical protein GCWU000342_01216 [Shuttleworthia satelles DSM
           14600]
          Length = 334

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 73/202 (36%), Gaps = 29/202 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           V+L GP G GK+ LA I S++        S          +     +     + +++I  
Sbjct: 56  VLLYGPPGLGKTTLAGIISNEMGVNVKITSGPAIAKPGEMAAILSGLGEGDILFVDEIHR 115

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD----------------LCSRL 162
           L+    ++  +  ++  Y   +++       S  + LP                 L  R 
Sbjct: 116 LNRQVEEV--LYPAMEDYAIDIMIGKGQSARSIRLDLPHFTLVGATTRAGLLSAPLRDRF 173

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DN 221
                ++   P +  L  +I        + ID++ A  + +R   +   A +L+ ++ D 
Sbjct: 174 GIIHHLEFYTPQE--LSVIIRHSADKLGVTIDREGAYEMARRSRGTPRLANRLLKRVRDY 231

Query: 222 LALSRGMGITRSLAAEVLKETQ 243
             +     ITR +A E L   +
Sbjct: 232 AEVEYEGKITREVAGEALDLLE 253


>gi|223646692|gb|ACN10104.1| 26S protease regulatory subunit 4 [Salmo salar]
 gi|223672541|gb|ACN12452.1| 26S protease regulatory subunit 4 [Salmo salar]
          Length = 440

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 49/208 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS-----IHQYDSSLLMTARTFPV 149
                 +++ID +                  L  + N             ++ T R   +
Sbjct: 278 APSIVFIDEIDAIGTKRYDSNFGGEREIQRTLLELFNQLDGFDFRGDVKVIMATNRIETL 337

Query: 150 SWGVCLP---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA--AYIVQR 204
              +  P   D          ++  LPD+    ++     +   + +   +     I+ +
Sbjct: 338 DPALIRPGGIDRK--------IEFPLPDEKTKRRIFNIHTSR--MTVADDVTLDDLILAK 387

Query: 205 MERSLVFAEKLVDKMDNLALSRGM-GIT 231
            + S    + +  +   +AL      +T
Sbjct: 388 DDLSGADIKAICTEAGLMALRERRMKVT 415


>gi|224101003|ref|XP_002334315.1| predicted protein [Populus trichocarpa]
 gi|222871041|gb|EEF08172.1| predicted protein [Populus trichocarpa]
          Length = 245

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R  +L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDL 201


>gi|254167175|ref|ZP_04874028.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
 gi|197624031|gb|EDY36593.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
          Length = 394

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   +  + +T    +   L    I     ++ E  DL 
Sbjct: 171 PPKGVLLAGPPGTGKTLLAKAVAHHTHATFIRTVGSELVRKYIGEGAKLVRELFDLA 227


>gi|189199666|ref|XP_001936170.1| cell division cycle protein 48 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983269|gb|EDU48757.1| cell division cycle protein 48 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 818

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 253 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 312

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 313 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 372

Query: 155 L 155
           L
Sbjct: 373 L 373



 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PSR V+  GP G+GK+ LA   +++  +                   SNI    D     
Sbjct: 527 PSRGVLFYGPPGTGKTLLAKAVANECAANFISIKGPELLSMWFGESESNIRDIFDKARAA 586

Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
               V L+++D +  +                 QL   ++ +    +  ++ A   P   
Sbjct: 587 APCVVFLDELDSIAKSRGGSQGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 646

Query: 152 G--------------VCLPDLCSR 161
                          V LPDL SR
Sbjct: 647 DNALCRPGRLDTLVYVPLPDLASR 670


>gi|164659980|ref|XP_001731114.1| hypothetical protein MGL_2113 [Malassezia globosa CBS 7966]
 gi|159105012|gb|EDP43900.1| hypothetical protein MGL_2113 [Malassezia globosa CBS 7966]
          Length = 737

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 29/124 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+                 S  A            P +
Sbjct: 478 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFARARASSPCV 537

Query: 113 L--EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +  +++D               + + D +L   +     +    L  L SR++   +   
Sbjct: 538 IFFDELDA-------------LVPRRDDTLSEASARVVNTLLTELDGLESRVQTYVIAAT 584

Query: 171 SLPD 174
           + PD
Sbjct: 585 NRPD 588


>gi|124515596|gb|EAY57106.1| putative IstB-like ATP-binding protein [Leptospirillum rubarum]
          Length = 261

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 23/116 (19%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIW---SDKSRSTRFSNIAKSLDSIL---------- 104
            W +    VV L GP G GK+ LA      + +         A+SL + L          
Sbjct: 95  RWVANGDNVVFL-GPPGVGKTHLAVALGVEAIRGGYRTLFVGAQSLIASLTRFHQEGRLE 153

Query: 105 -----IDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
                +   K +++++I  +  +       F +I+  ++   S+++T+     +WG
Sbjct: 154 EKLKQLAQYKLLIIDEIGYIPIDQLGANLFFQLISRRYEKG-SMILTSNQSYANWG 208


>gi|124006089|ref|ZP_01690925.1| holliday junction DNA helicase RuvB [Microscilla marina ATCC 23134]
 gi|123988266|gb|EAY27919.1| holliday junction DNA helicase RuvB [Microscilla marina ATCC 23134]
          Length = 345

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 27/201 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L+NI +++  +         LD           LE  D+L  ++   
Sbjct: 62  VLLHGPPGLGKTTLSNIIANELGTEIKITSGPVLDKPSDLAGLLTNLETNDVLFIDEI-- 119

Query: 127 FHIINSIHQY---------DSSLLMTARTFPVSWGVCLPD------------LCSRLKA- 164
            H +N I +             +++ +     +  + L              L S L+A 
Sbjct: 120 -HRLNPIVEEYLYSAMEDYKIDIMLDSGPSARTIQIALNPFTLIGATTRAGLLTSPLRAR 178

Query: 165 -ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
                ++   D D L  ++ +  A     I+   +  I  R   +   A  L+ +  D  
Sbjct: 179 FGIKARLEYYDADLLSTIVRRSCAILGTPIEHDASYEIAFRSRGTPRIANNLLRRTRDFA 238

Query: 223 ALSRGMGITRSLAAEVLKETQ 243
            +     IT  +A   L   +
Sbjct: 239 QVKGDGTITLEIAKMALDALE 259


>gi|308813299|ref|XP_003083956.1| 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus
           tauri]
 gi|116055838|emb|CAL57923.1| 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus
           tauri]
          Length = 930

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G GK+ LA+  + ++R   FS  A  + S +    +  + E
Sbjct: 336 PPRGVLLHGPPGCGKTTLAHAIAQEARVPFFSIAATEIVSGMSGESEAKIRE 387


>gi|15226199|ref|NP_180328.1| SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding /
           nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|13605797|gb|AAK32884.1|AF367297_1 F10A12.27/F10A12.27 [Arabidopsis thaliana]
 gi|3860272|gb|AAC73040.1| putative ATPase [Arabidopsis thaliana]
 gi|20147133|gb|AAM10283.1| F10A12.27/F10A12.27 [Arabidopsis thaliana]
 gi|20197659|gb|AAM15184.1| putative ATPase [Arabidopsis thaliana]
 gi|330252925|gb|AEC08019.1| vacuolar protein-sorting-associated protein 4 [Arabidopsis
           thaliana]
          Length = 435

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R  +L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDL 201


>gi|21593336|gb|AAM65285.1| putative ATPase [Arabidopsis thaliana]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R  +L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDL 201


>gi|152973913|ref|YP_001373430.1| ATP-dependent metalloprotease FtsH [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022665|gb|ABS20435.1| ATP-dependent metalloprotease FtsH [Bacillus cytotoxicus NVH
           391-98]
          Length = 639

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEDIDLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 369 A-DLENLLNEAALVAAR 384


>gi|314932733|ref|ZP_07840103.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87]
 gi|313654563|gb|EFS18315.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87]
          Length = 711

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHSKNKPL---DETVDLKAISQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  +L     
Sbjct: 371 GA-DLENLLNEASLIAARE 388


>gi|302337812|ref|YP_003803018.1| ATPase AAA [Spirochaeta smaragdinae DSM 11293]
 gi|301634997|gb|ADK80424.1| AAA ATPase central domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 735

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 21/137 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           +I  GP G GK+ LA + +  ++S         S + +   SI     +  L +   +L 
Sbjct: 52  LIFYGPPGCGKTALARVIAGTTKSAFDTLNAVLSGVKELRQSISSAKERKELYDKRTILF 111

Query: 121 FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            ++    H  N           +  + +L+ A T    + V  P L SR   + + ++  
Sbjct: 112 VDEV---HRWNKAQQDALLPWVENGTVILIGATTENPFFEVN-PALVSR---SRIFQLKP 164

Query: 173 PDDDFLEKVIVKMFADR 189
              D L  V  +   DR
Sbjct: 165 LSKDDLYAVAHQALNDR 181


>gi|289423791|ref|ZP_06425586.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L]
 gi|289155830|gb|EFD04500.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L]
          Length = 645

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 199 ALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGMGASRVRDLFKQAKEKAPCI 258

Query: 111 VLLEDIDLLDFNDTQLF--------HIINSIH------QYD-SSLLMTARTFPVSW---- 151
           V +++ID +       F          +N +       +     +++ A   P S     
Sbjct: 259 VFIDEIDAIGKKRDGAFGGGNDEREQTLNQLLSEMDGFENGIGIVMLAATNRPDSLDKAL 318

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 319 LRPGRFDRRIPVELPDLKGR 338


>gi|223044433|ref|ZP_03614466.1| putative ATP-dependent metallopeptidase HflB subfamily
           [Staphylococcus capitis SK14]
 gi|222442222|gb|EEE48334.1| putative ATP-dependent metallopeptidase HflB subfamily
           [Staphylococcus capitis SK14]
          Length = 711

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHSKNKPL---DETVDLKAISQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  +L     
Sbjct: 371 GA-DLENLLNEASLIAARE 388


>gi|218512792|ref|ZP_03509632.1| chromosomal replication initiation protein [Rhizobium etli 8C-3]
          Length = 147

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 156 PDLCSRLKAATVVKISLPD-DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
           P + SRL+    +++  PD +  LE +  ++ A RQ     ++ A ++Q + R++  
Sbjct: 6   PRVRSRLQGGVAIELDAPDYEMRLEILKRRLAAARQEDPSLEIPADLLQHVARNITA 62


>gi|210134616|ref|YP_002301055.1| recombination factor protein RarA [Helicobacter pylori P12]
 gi|210132584|gb|ACJ07575.1| recombination factor protein [Helicobacter pylori P12]
          Length = 391

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 21/184 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLE 114
                 GP G GK+ LA I +        S  A       +            +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRLKLKNYQNTLLKPIVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + D +L++ A T   ++ +    + SR   +   +++  +
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFTFELTPLN 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
              L+++  K     +  I+     Y++     S   A  L++ +  L+      IT   
Sbjct: 151 KSDLDRLCDKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLL-ELSAKIEDPITLKT 206

Query: 235 AAEV 238
              +
Sbjct: 207 LKSL 210


>gi|195390540|ref|XP_002053926.1| GJ24151 [Drosophila virilis]
 gi|194152012|gb|EDW67446.1| GJ24151 [Drosophila virilis]
          Length = 399

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E
Sbjct: 176 PPKGCLLYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIRE 227


>gi|193215466|ref|YP_001996665.1| recombination factor protein RarA [Chloroherpeton thalassium ATCC
           35110]
 gi|193088943|gb|ACF14218.1| AAA ATPase central domain protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 439

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 25/197 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA + S  S        A       + +     L++        T
Sbjct: 55  PSMILWGPPGVGKTTLALLLSRNSGYEYMQISAIDSGVKEVRSVITQALQN--HKRGKKT 112

Query: 125 QLF----HIINSIHQ-------YDSSL-LMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N   Q          +L L+ A T   S+ V +P L SR   + V  +  
Sbjct: 113 SLFIDEIHRFNKAQQDALLGAVEKGTLKLIGATTENPSFEV-IPALLSR---SVVYLLKP 168

Query: 173 PDDDFLEKVIVKMFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVD-KMDNLALSRG 227
            +++ + +V+ +         Q  I  +   ++ +        A   ++  ++    S+ 
Sbjct: 169 LENEDIRRVVNQALESDEILMQKTIQIEAWDFLFRLASGDARRALNTLEIAINAAEKSKK 228

Query: 228 MG--ITRSLAAEVLKET 242
               IT SL  + L++ 
Sbjct: 229 QPVLITESLLEKTLQQQ 245


>gi|158440551|gb|ABW38696.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis]
 gi|158441601|gb|ABW38726.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis]
          Length = 447

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS-----------TRFSNIAKSLDSILIDTRKP- 110
           P R  IL GPSG+GKS LA   ++++ +            ++S     L   L    K  
Sbjct: 226 PPRSCILHGPSGTGKSLLARACANETSACYMKMAGSELIQKYSGEGPRLVRELFKAAKAN 285

Query: 111 ----VLLE----------DIDLLDFNDTQ--LFHIINSI----HQYDSSLLMT------- 143
               + ++          D D     + Q  +  ++N +          ++M        
Sbjct: 286 QPTIIFIDEVDAVGRKRYDADSGGAREIQRTMLELLNQLDGFDRTEGVKVIMATNLIESL 345

Query: 144 ------ARTFPVSWGVCLPDLCSR 161
                 A        V LPDL +R
Sbjct: 346 DSALIRAGRIDRKIYVGLPDLTAR 369


>gi|111038318|gb|ABH03541.1| putative Werner helicase-interacting protein [Arabidopsis thaliana]
          Length = 524

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 25/174 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-- 122
             ++  GP G+GK+ +A    + S+                       +E    L+    
Sbjct: 137 PSIVFWGPPGTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGR 196

Query: 123 -DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N         + +  S L + A T   S+ +  P L SR     V+ 
Sbjct: 197 KRTVLFMDEVHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITP-LLSR---CRVLT 252

Query: 170 ISLPDDDFLEKVIVKMFAD--RQI----FIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++    + +E ++ +   D  R +     +D  +  ++    +     A   ++
Sbjct: 253 LNPLKPNHVETLLRRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNALE 306


>gi|52548689|gb|AAU82538.1| ATP-dependent 26S proteasome regulatory subunit [uncultured
           archaeon GZfos18C8]
          Length = 497

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   + ++ +T    +   L    I     ++ +  ++ 
Sbjct: 273 PPKGVLLFGPPGTGKTLLAKAVATRTDATFIRVVGSELVQKYIGEGARMVRDVFEMA 329


>gi|70727499|ref|YP_254415.1| cell-division protein [Staphylococcus haemolyticus JCSC1435]
 gi|123748601|sp|Q4L3G8|FTSH_STAHJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|68448225|dbj|BAE05809.1| cell-division protein [Staphylococcus haemolyticus JCSC1435]
          Length = 727

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHSKNKPL---DETVDLKAISQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  +L     
Sbjct: 371 GA-DLENLLNEASLIAARE 388


>gi|113460956|ref|YP_719023.1| recombination factor protein RarA [Haemophilus somnus 129PT]
 gi|112822999|gb|ABI25088.1| Recombination protein MgsA [Haemophilus somnus 129PT]
          Length = 446

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDI--DLLDFN 122
           +I  GP G+GK+ LA I + +  +   R S +   +  I         +E    + L   
Sbjct: 53  MIFWGPPGTGKTTLAEIIAQQIHAQVERISAVTAGVKEIRES------IERAKQNRLMGQ 106

Query: 123 DTQLF----HIINSIHQY 136
            T LF    H  N   Q 
Sbjct: 107 QTILFVDEVHRFNKTQQD 124


>gi|323448854|gb|EGB04747.1| hypothetical protein AURANDRAFT_55007 [Aureococcus anophagefferens]
          Length = 409

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +    +T    +A ++    I     V+ E
Sbjct: 190 VLLYGPPGTGKTLLARALASNINATFLKVVASAIVDKYIGESARVIRE 237


>gi|300362062|ref|ZP_07058239.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus gasseri JV-V03]
 gi|300354681|gb|EFJ70552.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus gasseri JV-V03]
          Length = 320

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 23/84 (27%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           + +LVGPSGSGK+ L  ++                + ++  T+  +LL+D  + D++  +
Sbjct: 30  IFVLVGPSGSGKTTLLKMF----------------NRLIEPTKGEILLDDKSIKDYDLRK 73

Query: 126 LFHIINSIHQYDSSLLMTARTFPV 149
           L        +    +L TA  FP 
Sbjct: 74  L-------REKTGYVLQTASLFPN 90


>gi|218507489|ref|ZP_03505367.1| recombination factor protein RarA [Rhizobium etli Brasil 5]
          Length = 250

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 31/188 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111
           R+I+   S     +I  GP G+GK+ +A +   ++       S I   +  +        
Sbjct: 47  RMIE---SGSLGSMIFWGPPGTGKTTVARLLPGEAGLAFEHISAIFSGVADLKKVFETA- 102

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
               +  +D   T LF    H  N           +  + +L+  T              
Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215
           L SR   A V+ +   D+  LE+++ +  A  Q  + + ++  A +++  +        L
Sbjct: 157 LLSR---ARVLTLKSHDEQSLEELLQRAEAIEQKPLPLTEEARASLIRMADGDGRAVLTL 213

Query: 216 VDKMDNLA 223
            +++   A
Sbjct: 214 AEEVWRAA 221


>gi|207722035|ref|YP_002252473.1| transposition helper protein (partial sequence) [Ralstonia
           solanacearum MolK2]
 gi|206587209|emb|CAQ17793.1| putative transposition helper protein (partial sequence) [Ralstonia
           solanacearum MolK2]
          Length = 239

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 70  ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 124

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 125 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 182

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 183 FTQWATAFAD 192


>gi|254168911|ref|ZP_04875751.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
 gi|197622175|gb|EDY34750.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
          Length = 437

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 77/237 (32%), Gaps = 55/237 (23%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRV-----VILVGPSGSGKSCLANIWSDK 87
                 RD  +V     QA+  I  W   W         +ILVG  G GK+  A   +++
Sbjct: 9   YRPKRLRD--IVG--NTQAINEILRWAEEWEEGKPSYKALILVGKPGCGKTTTARALANE 64

Query: 88  SRSTRFSNIAK-----------SLDSILIDT--------------RKPVLLEDIDLL--- 119
                    A            +L   + +T              RK ++ ++ D L   
Sbjct: 65  MGWGVIELNASDVRNEEKIKQIALRGAIYETFTDDGKFISTRKGGRKLIIFDEADNLYEG 124

Query: 120 --DFNDTQLFHIINSIHQYDSSLLMTA----RTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             D +      I+ +I      +++           +WG  L         A VVK    
Sbjct: 125 VKDGDRGGKKAIVETIKASKQPIILIGNDYYSITSGTWGKVLK------SVAKVVKFRAV 178

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   + KV+ ++ A   I    ++  YI     +S       ++  D  A++ G  +
Sbjct: 179 NRAQIVKVLRRICAAEGIKCQDEVLKYIA---GKSGGDLRAAIN--DLQAIAEGKKV 230


>gi|189200505|ref|XP_001936589.1| hypothetical protein PTRG_06256 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983688|gb|EDU49176.1| hypothetical protein PTRG_06256 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 662

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+R ++L GP G+GK+ LA   + +S+ST F+  A SL S  +   + ++          
Sbjct: 406 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTSKFLGESEKLV---------- 455

Query: 123 DTQLFHI 129
              LF +
Sbjct: 456 -RALFQL 461


>gi|186489957|ref|NP_175433.2| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|332194397|gb|AEE32518.1| P-loop containing NTPase domain-containing protein [Arabidopsis
           thaliana]
          Length = 1003

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ LA   + ++ +   S    +L S
Sbjct: 748 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 787


>gi|166366513|ref|YP_001658786.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166088886|dbj|BAG03594.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 614

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA   + ++R+   S     L S  +   +  + E
Sbjct: 397 ILLWGPPGTGKTLLAKAVASQARANFISINGPELLSKWVGASEQAVRE 444



 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P+R V+LVGP G+GK+  A   +++      +               + L  I     K 
Sbjct: 127 PTRGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVISKYYGEAEQKLRGIFEKASKN 186

Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +  +              QL  +++   Q    +++ A   P      
Sbjct: 187 APCIVFIDEIDSMAPDRSKVEGEVEKRLVAQLLGLMDGFAQSQGVIVLAATNRPDHLDPA 246

Query: 155 L 155
           L
Sbjct: 247 L 247


>gi|74002396|ref|XP_853576.1| PREDICTED: similar to proteasome 26S ATPase subunit 6 [Canis
           familiaris]
          Length = 260

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|46390947|dbj|BAD16461.1| transitional endoplasmic reticulum ATPase-like [Oryza sativa
           Japonica Group]
          Length = 473

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 43/144 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P + V+L GP G+GK+ LA   + ++ +   S    +L S                    
Sbjct: 216 PCKGVLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRL 275

Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144
            PV++  +++D L       F H     + N            +    L++ A       
Sbjct: 276 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKESQRILILGATNRPFDL 335

Query: 145 -----RTFPVSWGVCLPDLCSRLK 163
                R  P    V LPD  +R+K
Sbjct: 336 DDAVIRRLPRRIYVDLPDAQNRMK 359


>gi|26451436|dbj|BAC42817.1| unknown protein [Arabidopsis thaliana]
          Length = 525

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 25/174 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-- 122
             ++  GP G+GK+ +A    + S+                       +E    L+    
Sbjct: 138 PSIVFWGPPGTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGR 197

Query: 123 -DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N         + +  S L + A T   S+ +  P L SR     V+ 
Sbjct: 198 KRTVLFMDEVHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITP-LLSR---CRVLT 253

Query: 170 ISLPDDDFLEKVIVKMFAD--RQI----FIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++    + +E ++ +   D  R +     +D  +  ++    +     A   ++
Sbjct: 254 LNPLKPNHVETLLRRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNALE 307


>gi|70995044|ref|XP_752288.1| AAA family ATPase/60S ribosome export protein Rix7 [Aspergillus
           fumigatus Af293]
 gi|66849923|gb|EAL90250.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus fumigatus Af293]
 gi|159131044|gb|EDP56157.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus fumigatus A1163]
          Length = 784

 Score = 40.5 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 561 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 606



 Score = 37.8 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +         A S+ S +    +  L E  +  
Sbjct: 253 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIPISAPSIVSGMSGESEKALREHFEEA 309


>gi|325971232|ref|YP_004247423.1| Holliday junction ATP-dependent DNA helicase ruvB [Spirochaeta sp.
           Buddy]
 gi|324026470|gb|ADY13229.1| Holliday junction ATP-dependent DNA helicase ruvB [Spirochaeta sp.
           Buddy]
          Length = 353

 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 33/200 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT--------RKPVLLE 114
           P     L+GP G GK+ LA+I +++  +      A +LD                   ++
Sbjct: 63  PLDHTFLIGPPGLGKTTLASIIANEMGAEIRMTSAPALDKPKDLAGILTNVTEGSVFFID 122

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVS-WGVCLPD---------------- 157
           +I  L     ++ +I     +      +  +        + LP                 
Sbjct: 123 EIHRLKPALEEMLYI---AMEDFEIDWVIGQGPAARTMRIPLPKFTLVGATTKAGSVSSP 179

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAEKLV 216
           L SR        I   ++  L  +I +      + IDKK    +  R  R +   A +L+
Sbjct: 180 LSSRF--GITCHIEFYNEQELASIIARSAQIMDVQIDKKAIVQLA-RCSRGTPRIANRLL 236

Query: 217 DKMDNLALSRG-MGITRSLA 235
            ++ + A+  G   +T ++ 
Sbjct: 237 RRLRDFAMVMGDGTVTVAVV 256


>gi|320120442|gb|EFE27854.2| holliday junction DNA helicase RuvB [Filifactor alocis ATCC 35896]
          Length = 337

 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L+ I +++  +        +++           L D D+L  ++   
Sbjct: 59  VLLYGPPGLGKTTLSYIIANEMSANIKITSGPAIEKSGDLAAILTNLSDGDVLFIDEI-- 116

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 117 -HRLNRTVEE 125


>gi|321312280|ref|YP_004204567.1| recombination factor protein RarA [Bacillus subtilis BSn5]
 gi|320018554|gb|ADV93540.1| recombination factor protein RarA [Bacillus subtilis BSn5]
          Length = 421

 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  +        +      ++        +  +  ++L+++ 
Sbjct: 41  MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD              +    +L+ A T      +  P + SR     + ++     D 
Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPDL 153

Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
           +++ + +   D  R +      ID +   +               ++ ++   LS     
Sbjct: 154 IKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCG---GDVRSALNALELAVLSTKESA 210

Query: 230 -----ITRSLAAEVLKE 241
                IT   A E L++
Sbjct: 211 DGEIHITLETAEECLQK 227


>gi|194748363|ref|XP_001956616.1| GF24499 [Drosophila ananassae]
 gi|190623898|gb|EDV39422.1| GF24499 [Drosophila ananassae]
          Length = 398

 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E
Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIRE 226


>gi|239917581|ref|YP_002957139.1| predicted ATPase [Micrococcus luteus NCTC 2665]
 gi|281413933|ref|ZP_06245675.1| predicted ATPase [Micrococcus luteus NCTC 2665]
 gi|239838788|gb|ACS30585.1| predicted ATPase [Micrococcus luteus NCTC 2665]
          Length = 351

 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 39/201 (19%)

Query: 67  VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115
           + L G  G GK+  LA+ W               +     ++       +     V +++
Sbjct: 86  IYLDGGFGVGKTHLLASTWHAAPGPKAFGTFVEYTNLVGALSFRKAVDQLKEYTLVCIDE 145

Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG---VCLPDLCS----------- 160
            +L D  DT L   ++  +      L+ T+ T P S G       D              
Sbjct: 146 FELDDPGDTVLMSRLMRELADAGVRLVATSNTLPGSLGEGRFAAQDFKREIQVLAEQFEV 205

Query: 161 --------RLKAATVVKISLPDDDFLEKVIVKMFADRQ-IFIDK-KLAAYIVQRMERSLV 210
                   R +  T     LPDD  +     + F D   + +D       ++ R+  S  
Sbjct: 206 IRVDGEDYRHRGLTAAPDPLPDDQVVATA-EQNFPDAGVLAVDDFDALTAMLSRVHPS-- 262

Query: 211 FAEKLVDKMDNLALSRGMGIT 231
              +LV  +D LAL     IT
Sbjct: 263 RYRELVKDVDVLALHDVKTIT 283


>gi|170760872|ref|YP_001788390.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A3 str.
           Loch Maree]
 gi|238688789|sp|B1L0B2|RUVB_CLOBM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169407861|gb|ACA56272.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 342

 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+  GP G GK+ LANI +++           +++           L D D+L  ++   
Sbjct: 55  VLFYGPPGLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 113 -HRLNRSIEE 121


>gi|170108166|ref|XP_001885292.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639768|gb|EDR04037.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 770

 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 499 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 544



 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R V+L GP G GK+ LAN  + +      S  A S+
Sbjct: 155 PPRGVLLHGPPGCGKTLLANAMAGELGVPFISISAPSI 192


>gi|154248858|ref|YP_001409683.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152794|gb|ABS60026.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum
           Rt17-B1]
          Length = 614

 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 67/221 (30%), Gaps = 63/221 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++    F         + +                     
Sbjct: 196 ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFEQAKANSPCI 255

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++      + ++M A   P      L
Sbjct: 256 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVNQAIVVMAATNRPDILDPAL 315

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL--------------- 197
                 L+       V +  PD    E ++     ++ I  D  +               
Sbjct: 316 ------LRPGRFDKKVVVDPPDVKGREAILKIHLRNKPIDKDVDVSVLAKRTTGFVGADL 369

Query: 198 ------AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230
                 AA +  R  R+++      + +D      +R   +
Sbjct: 370 ENLVNEAALLAARDGRNVIKMNDFEEAIDRVIAGPARKSRV 410


>gi|76802176|ref|YP_327184.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
 gi|76558041|emb|CAI49627.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
          Length = 740

 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEE 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ +      +++ A     S    
Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDS---V 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD+   ++++      R + +   +
Sbjct: 339 DPALRRPGRFDREIEIGVPDETGRKEILQ--IHTRGMPLADDV 379



 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   V+L GP G+GK+ +A   ++++ +   S
Sbjct: 495 PPSGVLLYGPPGTGKTLMAKAVANETNANFIS 526


>gi|16127466|ref|NP_422030.1| Holliday junction DNA helicase B [Caulobacter crescentus CB15]
 gi|221236279|ref|YP_002518716.1| Holliday junction DNA helicase RuvB [Caulobacter crescentus NA1000]
 gi|20140205|sp|Q9A3G8|RUVB_CAUCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767417|sp|B8H454|RUVB_CAUCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|13424920|gb|AAK25198.1| Holliday junction DNA helicase RuvB [Caulobacter crescentus CB15]
 gi|220965452|gb|ACL96808.1| Holliday junction DNA helicase ruvB [Caulobacter crescentus NA1000]
          Length = 346

 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 31/203 (15%)

Query: 67  VILVGPSGSGKSCLANI--------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           V+L GP G GK+ LA I        +   S          +     ++    + +++I  
Sbjct: 56  VLLFGPPGLGKTTLAQIVARELGVNFRATSGPVLNKPGDLAAILTNLEANDVLFIDEIHR 115

Query: 119 LDFNDTQLF------HIINSIHQYDSSL-----------LMTARTFPVSWGVCLPDLCSR 161
           L  N  ++       H+++ +     S            L+ A T        L D    
Sbjct: 116 LSSNVEEILYPAMEDHVLDLVIGEGPSARSIRIDLAPFTLVAATTRAGMLATPLRD---- 171

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            +    +++       L  V+          +    A  I +R   +   A +L+ ++ +
Sbjct: 172 -RFGIPIRLEFYTPAELRHVLQHAARKMGAPLTDDGADEIAKRARGTPRVAGRLLRRVRD 230

Query: 222 LALSRGM-GITRSLAAEVLKETQ 243
            A + G   I R  AA  L   +
Sbjct: 231 FATADGADRIDRKAAAMALARLE 253


>gi|56807432|ref|ZP_00365394.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Streptococcus pyogenes M49 591]
          Length = 353

 Score = 40.5 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +R               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                + +++M   T    +    P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++  I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTTTNGDLRSAYNSLD 200


>gi|331001822|ref|ZP_08325344.1| hypothetical protein HMPREF0491_00206 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412796|gb|EGG92179.1| hypothetical protein HMPREF0491_00206 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 441

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 67/180 (37%), Gaps = 31/180 (17%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP------------VL 112
           +I  GP G GK+ +A + ++  KS   + +        +     +             + 
Sbjct: 55  IIFFGPPGCGKTTIAKVIANTTKSNFKQINATMAGKKEMEEAVSEAKISFSMYKKKTILF 114

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++I   + +            +  + +L+ A T    + V    L SR   + V+++  
Sbjct: 115 IDEIHRFNKSQQDYLLPF---VEDGTIILIGATTENPFFEVNKA-LISR---SRVLELKS 167

Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             D  +E ++ K  +D  R +      I K+   ++ + +      A   ++ ++   L+
Sbjct: 168 LSDKDIEYILEKAISDRERGMGRYETDISKEAIEFLAKSVS---GDARNALNALELAILT 224


>gi|324513590|gb|ADY45579.1| Transitional endoplasmic reticulum ATPase 2 [Ascaris suum]
          Length = 474

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + + ++   S     L ++     +  + +  D  
Sbjct: 179 PSRGVLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKA 235


>gi|242810288|ref|XP_002485551.1| sister chromatid cohesion factor (Chl12), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218716176|gb|EED15598.1| sister chromatid cohesion factor (Chl12), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1151

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 61  SWPSRV-VILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDI 116
            W  R  ++L GP G GK+ LA++ + ++        ++  +S D +    R  V  E++
Sbjct: 457 EWAHRKILMLTGPPGLGKTTLAHVCAQQAGYEVLEINASDERSRDVVKGRIRDAVGTENV 516

Query: 117 DLLDF 121
             +  
Sbjct: 517 KSISA 521


>gi|198461041|ref|XP_001361892.2| GA17483 [Drosophila pseudoobscura pseudoobscura]
 gi|198137214|gb|EAL26471.2| GA17483 [Drosophila pseudoobscura pseudoobscura]
          Length = 745

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D +L+    
Sbjct: 345 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 387


>gi|297190256|ref|ZP_06907654.1| IstB domain-containing protein ATP-binding protein [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719122|gb|EDY63030.1| IstB domain-containing protein ATP-binding protein [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 168

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 22/110 (20%)

Query: 63  PSRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSILIDTR---------- 108
               + L+G SG+GKS L        ++     R++  A  ++ +               
Sbjct: 15  AGNPLCLIGDSGTGKSHLLIGLGTAIAEAGGRIRYTTAANLVNELAEAASDKQLGRTIKK 74

Query: 109 ----KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
                 + L++   +  +      LF I  +  +   ++ + +      W
Sbjct: 75  YGRVDLLCLDEFGYVKLDRHGAELLFQIF-TEREERHAIAIASNRPFTEW 123


>gi|307592309|ref|YP_003899900.1| ABC transporter domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306985954|gb|ADN17834.1| ABC transporter domain protein [Cyanothece sp. PCC 7822]
          Length = 560

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           P+  +++ GPSG GKS L    +    +     I   ++ +L   ++P ++
Sbjct: 379 PASDLLIWGPSGCGKSSLLRAIAGLDNAGTGLIIRPDIEQMLFLPQRPYMI 429


>gi|195170272|ref|XP_002025937.1| GL10197 [Drosophila persimilis]
 gi|194110801|gb|EDW32844.1| GL10197 [Drosophila persimilis]
          Length = 744

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D +L+    
Sbjct: 344 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 386


>gi|51893539|ref|YP_076230.1| recombination factor protein RarA [Symbiobacterium thermophilum IAM
           14863]
 gi|51857228|dbj|BAD41386.1| ATP/GTP-binding domain protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 438

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 72/201 (35%), Gaps = 41/201 (20%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL---------L 113
           IL GP G+GK+ LA + +    +        ++  + +  I+ + R  +          +
Sbjct: 56  ILFGPPGTGKTTLARLMASNVNAHFEQLNAVTSGVQDIRRIVDEARARLAERGQKTVVFI 115

Query: 114 EDIDLLDFNDT-QLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++I     +    L  H+     +     L+ A T      V  P L SR +   + ++ 
Sbjct: 116 DEIHRWRKDQQDALLPHV-----EDGLITLVGATTQNPLVSVNAP-LVSRTR---IFELK 166

Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
              D+ +  ++ +      R +      +  +   ++V RM  +   A   ++ ++   L
Sbjct: 167 PLSDEHIAHLLDRALRTPGRGLGNYNATVTPEAMEHLV-RM--AGGDARAALNALELAVL 223

Query: 225 ------SRGMGITRSLAAEVL 239
                      +T   A E L
Sbjct: 224 LTQPDEQGRRTVTLETAEEAL 244


>gi|157828159|ref|YP_001494401.1| putative ATPase n2B [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932857|ref|YP_001649646.1| ATPase [Rickettsia rickettsii str. Iowa]
 gi|157800640|gb|ABV75893.1| putative ATPase n2B [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907944|gb|ABY72240.1| ATPase [Rickettsia rickettsii str. Iowa]
          Length = 350

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 24/109 (22%)

Query: 67  VILVGPSGSGKSCLANIWSD-----------------------KSRSTRFSNIAKSLDSI 103
           + L GP GSGK+ L N + +                       K ++    +I   +   
Sbjct: 47  IYLYGPVGSGKTMLMNSFCEELTTPKIIIHYQNFMQEIHKSMHKLQTANQKDIIPKIAKN 106

Query: 104 LIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151
                K + +++ ++ D  D  +   + N++ Q +  + +T+ T P + 
Sbjct: 107 YTKQTKVLCIDEFEIKDITDAMIIGRLFNALIQQNIFIFITSNTSPNNL 155


>gi|326488723|dbj|BAJ97973.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 830

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   + +S +   S     L ++     +  + E  D  
Sbjct: 514 PSRGVLFFGPPGCGKTLLAKAVASESTANFISVKGPELLTMWFGESEANVREVFDKA 570



 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ +A   ++++ +  F                +N+ ++ +    +
Sbjct: 241 PPKGVLLHGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMAGDSEANLRRAFEEAEKN 300

Query: 107 TRKPVLLEDIDLLD 120
               + +++ID + 
Sbjct: 301 APAIIFIDEIDSIA 314


>gi|325001112|ref|ZP_08122224.1| hypothetical protein PseP1_20222 [Pseudonocardia sp. P1]
          Length = 236

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 33/151 (21%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRF------------SNIAKSLDSILIDTRKPV 111
            R V+L GP G+GKS L +  + +S                    A     +L D   P 
Sbjct: 38  GRHVVLEGPPGTGKSTLLHAIARESGRRTVFVEGNAELTPARLVGAFDPAQVLTDGYVPA 97

Query: 112 LLEDIDLLDF----NDTQLFHI--INSIHQYDSSLLMTARTFPVSWGVCLPDLCS----- 160
              D  LL       D+ L ++  +N I +   ++L+T  T      + +P L +     
Sbjct: 98  AFVDGPLLTALRGDGDSGLLYLEEMNRIPEETLNVLITVLT---EGEITVPRLGTVPAGP 154

Query: 161 --RLKAATVVKISLPDDDFLEKVIVKMFADR 189
             RL AA       P D      + +  ADR
Sbjct: 155 GFRLIAAM-----NPFDAVGTARVSQAIADR 180


>gi|323165534|gb|EFZ51321.1| insertion sequence IS21 putative ATP-binding protein [Shigella
           sonnei 53G]
          Length = 265

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 38/165 (23%)

Query: 16  QKNDQPKNKEEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           Q+  + + K+ +L        F F    GI R   +V       +  ++   +     VI
Sbjct: 51  QRGMESRLKQARLPWVKTLEQFDFTFQPGIDRK--VVRE--LAGLAFVERSEN-----VI 101

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTRKP 110
           L+GP G GK+ LA     K+       +   LD ++                  +   + 
Sbjct: 102 LLGPPGVGKTHLAIALGVKAVDAGHRVLFMPLDRLIATLMKAKQENRLERQLQQLSYARV 161

Query: 111 VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
           ++L++ID L  N  +    F ++N      +S+++T+      WG
Sbjct: 162 LILDEIDYLPMNREEASLFFRLLNR-RYEKASIILTSNKGFADWG 205


>gi|312371657|gb|EFR19786.1| hypothetical protein AND_21807 [Anopheles darlingi]
          Length = 419

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 43/142 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P++ ++L GP G+GK+ LA   + +  +T FS  A +L S  +   + ++          
Sbjct: 163 PAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGEGEKLVRALFAVAREL 222

Query: 113 ------LEDIDLL----DFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSW 151
                 ++++D +      N+ +            F  + +  + D  ++M A   P   
Sbjct: 223 QPSIIFIDEVDSVLSERSSNEHEATRRLKTEFLVQFDGLPANSEADKIVVMAATNRPQEL 282

Query: 152 G------------VCLPDLCSR 161
                        V LPDL +R
Sbjct: 283 DEAALRRFPKRVYVTLPDLDTR 304


>gi|296417934|ref|XP_002838602.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634552|emb|CAZ82793.1| unnamed protein product [Tuber melanosporum]
          Length = 747

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++SR+   S
Sbjct: 500 VLLWGPPGCGKTLLAKAVANESRANFIS 527


>gi|282855978|ref|ZP_06265269.1| RecA protein [Pyramidobacter piscolens W5455]
 gi|282586197|gb|EFB91474.1| RecA protein [Pyramidobacter piscolens W5455]
          Length = 386

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 64  SRVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNI--AKSLDSILIDTRKPVLLEDIDLLD 120
            R+V + GP GSGK+ LA +  ++  ++   +    A+      +     V +E + L  
Sbjct: 65  GRIVEVFGPEGSGKTTLALHAIAEAQKAGGVAAFIDAEHALDPRLAAALGVQIESLYLSQ 124

Query: 121 FN--DTQLFHIINSIHQ 135
            +  +  LF +   +  
Sbjct: 125 PDSGEQALFILETLVRS 141


>gi|296089089|emb|CBI38792.3| unnamed protein product [Vitis vinifera]
          Length = 491

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 252 PARGLLLFGPPGNGKTMLAKAVASESAATFFNVSASSLTSKWVGEGEKLV 301


>gi|257459680|ref|ZP_05624789.1| ATPase, AAA family [Campylobacter gracilis RM3268]
 gi|257443105|gb|EEV18239.1| ATPase, AAA family [Campylobacter gracilis RM3268]
          Length = 395

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 71/184 (38%), Gaps = 21/184 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVL-LE 114
              I  G +GSGK+ +A + + +         + S +  +I K L S      KP++ ++
Sbjct: 35  PHSIFFGAAGSGKTTMARVIASELNYDFYELDATSLKVEDIRKILSSHAGSLIKPLIFID 94

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +I  L     ++      I   + + ++   T      V    + SR   + + +     
Sbjct: 95  EIHRLSKTQQEVL----LIPMENYAAIIIGATTENPQFVLSSGIRSR---SMIFEFEPLS 147

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234
            + LE ++ ++  +    +D++   Y++     S   A  +++ +   AL     IT   
Sbjct: 148 YEDLEALLARVQGEIGFEMDEEARKYLLNS---SSGDARSMLNLL-EFALLADSAITLDT 203

Query: 235 AAEV 238
              +
Sbjct: 204 LRTL 207


>gi|217075901|gb|ACJ86310.1| unknown [Medicago truncatula]
          Length = 284

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 149


>gi|254167708|ref|ZP_04874558.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
 gi|289597057|ref|YP_003483753.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
 gi|197623236|gb|EDY35801.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
 gi|289534844|gb|ADD09191.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
          Length = 394

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   +  + +T    +   L    I     ++ E  DL 
Sbjct: 171 PPKGVLLAGPPGTGKTLLAKAVAHHTHATFIRTVGSELVRKYIGEGAKLVRELFDLA 227


>gi|167644521|ref|YP_001682184.1| IstB ATP-binding domain-containing protein [Caulobacter sp. K31]
 gi|167644533|ref|YP_001682196.1| IstB ATP-binding domain-containing protein [Caulobacter sp. K31]
 gi|167346951|gb|ABZ69686.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31]
 gi|167346963|gb|ABZ69698.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31]
          Length = 242

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 22/109 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSD---KSRST-RFSNIAKSLDSILIDTRK------PVLLE 114
           R V+LVG +G+GK+ LA   +    ++ +  RF N+   ++ +  +TR+         L 
Sbjct: 99  RNVVLVGGTGTGKTHLAIAITANVVRAGARGRFFNLVDLVNRLEDETRRGKAGTLAAQLS 158

Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
            +DL+  ++             LFH+I+ +++  +S+++T       W 
Sbjct: 159 RLDLVVLDELGYLPFAQSGGQLLFHLISKLYER-TSVIITTNLAFGEWP 206


>gi|110591249|pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591250|pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591251|pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591252|pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591253|pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
 gi|110591254|pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
           Ftsh (G399l)
          Length = 499

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G GK+ LA   + ++R    +        + +      + +
Sbjct: 67  VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 114


>gi|24652279|ref|NP_724866.1| TER94, isoform B [Drosophila melanogaster]
 gi|7303817|gb|AAF58864.1| TER94, isoform B [Drosophila melanogaster]
 gi|25012330|gb|AAN71276.1| LP12034p [Drosophila melanogaster]
 gi|220950626|gb|ACL87856.1| TER94-PB [synthetic construct]
          Length = 297

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 3   PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 59


>gi|68535343|ref|YP_250048.1| cell division protein [Corynebacterium jeikeium K411]
 gi|68262942|emb|CAI36430.1| cell division protein [Corynebacterium jeikeium K411]
          Length = 796

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 55/209 (26%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    F+        + +                   
Sbjct: 202 RGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFKQAKENSP 261

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     D  +LM A   P     
Sbjct: 262 CIIFVDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGDRDGVILMAATNRPDILDP 321

Query: 154 CL--------------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR-----QIFID 194
            L              PDL  R     ++ +   D    + V +K  A R        ++
Sbjct: 322 ALLRPGRFDRQIPVTNPDLAGR---EQILNVHAKDKPLAKDVDLKSLAKRTAGMSGADLE 378

Query: 195 KKL--AAYIVQRMERSLVFAEKLVDKMDN 221
             L  AA +  R+E +++ A+ L +  D 
Sbjct: 379 NVLNEAALLTARVEGNVITADALEEATDR 407


>gi|67643955|ref|ZP_00442698.1| ATPase, AAA family protein [Burkholderia mallei GB8 horse 4]
 gi|76809377|ref|YP_334448.1| recombination factor protein RarA [Burkholderia pseudomallei 1710b]
 gi|121599128|ref|YP_992137.1| recombination factor protein RarA [Burkholderia mallei SAVP1]
 gi|124386623|ref|YP_001028581.1| recombination factor protein RarA [Burkholderia mallei NCTC 10229]
 gi|126448329|ref|YP_001081520.1| recombination factor protein RarA [Burkholderia mallei NCTC 10247]
 gi|134280424|ref|ZP_01767135.1| ATPase, AAA family [Burkholderia pseudomallei 305]
 gi|166998317|ref|ZP_02264177.1| ATPase, AAA family protein [Burkholderia mallei PRL-20]
 gi|167816971|ref|ZP_02448651.1| recombination factor protein RarA [Burkholderia pseudomallei 91]
 gi|254175353|ref|ZP_04882013.1| ATPase, AAA family protein [Burkholderia mallei ATCC 10399]
 gi|254191852|ref|ZP_04898355.1| ATPase, AAA family [Burkholderia pseudomallei Pasteur 52237]
 gi|254196125|ref|ZP_04902550.1| ATPase, AAA family [Burkholderia pseudomallei S13]
 gi|254202387|ref|ZP_04908750.1| ATPase, AAA family protein [Burkholderia mallei FMH]
 gi|254207719|ref|ZP_04914069.1| ATPase, AAA family protein [Burkholderia mallei JHU]
 gi|254261086|ref|ZP_04952140.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1710a]
 gi|254356381|ref|ZP_04972657.1| ATPase, AAA family protein [Burkholderia mallei 2002721280]
 gi|76578830|gb|ABA48305.1| ATPase, AAA family protein [Burkholderia pseudomallei 1710b]
 gi|121227938|gb|ABM50456.1| ATPase, AAA family protein [Burkholderia mallei SAVP1]
 gi|124294643|gb|ABN03912.1| ATPase, AAA family [Burkholderia mallei NCTC 10229]
 gi|126241199|gb|ABO04292.1| ATPase, AAA family protein [Burkholderia mallei NCTC 10247]
 gi|134248431|gb|EBA48514.1| ATPase, AAA family [Burkholderia pseudomallei 305]
 gi|147746634|gb|EDK53711.1| ATPase, AAA family protein [Burkholderia mallei FMH]
 gi|147751613|gb|EDK58680.1| ATPase, AAA family protein [Burkholderia mallei JHU]
 gi|148025378|gb|EDK83532.1| ATPase, AAA family protein [Burkholderia mallei 2002721280]
 gi|157939523|gb|EDO95193.1| ATPase, AAA family [Burkholderia pseudomallei Pasteur 52237]
 gi|160696397|gb|EDP86367.1| ATPase, AAA family protein [Burkholderia mallei ATCC 10399]
 gi|169652869|gb|EDS85562.1| ATPase, AAA family [Burkholderia pseudomallei S13]
 gi|238525428|gb|EEP88856.1| ATPase, AAA family protein [Burkholderia mallei GB8 horse 4]
 gi|243065389|gb|EES47575.1| ATPase, AAA family protein [Burkholderia mallei PRL-20]
 gi|254219775|gb|EET09159.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 1710a]
          Length = 436

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             +D L +++ K   D     +  D K    +V   +     A + ++ ++  
Sbjct: 163 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211


>gi|302680046|ref|XP_003029705.1| hypothetical protein SCHCODRAFT_58751 [Schizophyllum commune H4-8]
 gi|300103395|gb|EFI94802.1| hypothetical protein SCHCODRAFT_58751 [Schizophyllum commune H4-8]
          Length = 724

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ LA+  + +      S  A S+ S +    +  L +  D  
Sbjct: 125 PPRGVLLHGPPGCGKTLLAHAIAGELGVPFISISAPSIVSGMSGESEKTLRDTFDEA 181



 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++S ++  S     L +  +   +  +
Sbjct: 464 VLLWGPPGCGKTLLARAVANESCASFVSVKGPELLNKYVGESERAV 509


>gi|294494986|ref|YP_003541479.1| proteasome-activating nucleotidase [Methanohalophilus mahii DSM
           5219]
 gi|292665985|gb|ADE35834.1| Proteasome-activating nucleotidase [Methanohalophilus mahii DSM
           5219]
          Length = 429

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ +A   + ++ +T    +   L    I     ++ E  D+ 
Sbjct: 204 PPKGVLLHGPPGTGKTMMAKAVAHRTDATFIRVVGSELVQKYIGEGSRLVREVFDMA 260


>gi|297738362|emb|CBI27563.3| unnamed protein product [Vitis vinifera]
          Length = 769

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 29/108 (26%)

Query: 60  PSW----PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILID- 106
           P W    P   ++L GP G GK+ LA+  +++        S +   S ++ + +  + + 
Sbjct: 219 PRWLGVRPMAGILLHGPPGCGKTKLAHAIANETKVPFYKISATEVVSGVSGASEENIREL 278

Query: 107 -------TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144
                      V +++ID +           N   + +  +   LMT 
Sbjct: 279 FSKAYRTAPSIVFIDEIDAIASKRE------NLNREMERRIVTQLMTC 320



 Score = 36.7 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 20/46 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            +L GP G GK+ +A   ++++ +         L +  +   +  +
Sbjct: 535 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAV 580


>gi|226366324|ref|YP_002784107.1| recombination factor protein RarA [Rhodococcus opacus B4]
 gi|226244814|dbj|BAH55162.1| putative AAA family ATPase [Rhodococcus opacus B4]
          Length = 477

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 23/154 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA++ S  +   RF  ++ +L + + + R  + L    LL    T L
Sbjct: 81  VLLYGPPGTGKTTLASLISGATG-RRFEALS-ALSAGVKEVRGVIELARRRLLAGEQTVL 138

Query: 127 F----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  +        +  +    LL+ A T   S+ V  P L SR   + V+++    
Sbjct: 139 FIDEVHRFSKTQQDALLAAVENRIVLLVAATTENPSFSVVSP-LLSR---SLVLQLQSLT 194

Query: 175 DDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203
            D +E ++ +   D R +     I      ++V+
Sbjct: 195 ADDIENLLERARTDERGLGGDIEIAGDAMDHLVR 228


>gi|208434367|ref|YP_002266033.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           G27]
 gi|208432296|gb|ACI27167.1| conserved hypothetical helicase-like protein [Helicobacter pylori
           G27]
          Length = 391

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114
                 GP G GK+ LA I +         F+     L+ + +          +  V ++
Sbjct: 38  PHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +   L+    +    I    + + +L++ A T   ++ +    + SR   + + +++   
Sbjct: 98  ETHRLNKTQQEFLLPI---MEKNHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLK 150

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              L+K+  K     +  I+     Y++     S   A  L++ +D  A
Sbjct: 151 KSDLDKLCTKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA 196


>gi|168027617|ref|XP_001766326.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682540|gb|EDQ68958.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 398

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +SR+   +
Sbjct: 119 PQKGVLLFGPPGTGKTLLAKAIAKESRAVFIN 150


>gi|126439052|ref|YP_001060001.1| recombination factor protein RarA [Burkholderia pseudomallei 668]
 gi|126218545|gb|ABN82051.1| replication-associated recombination protein A [Burkholderia
           pseudomallei 668]
          Length = 436

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             +D L +++ K   D     +  D K    +V   +     A + ++ ++  
Sbjct: 163 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211


>gi|330836554|ref|YP_004411195.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta coccoides
           DSM 17374]
 gi|329748457|gb|AEC01813.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta coccoides
           DSM 17374]
          Length = 356

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 32/190 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------LIDTRKPVLLEDIDL 118
           V L+GP G GK+ LA I +++  +      A +LD           I       +++I  
Sbjct: 70  VFLIGPPGLGKTTLATIIANEMNAEIRMTSAPALDKPKDLAGILTNISENSVFFIDEIHR 129

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVS-WGVCLPD----------------LCSR 161
           L     ++ +I     +      +  +        + LP                 L SR
Sbjct: 130 LKPALEEMLYI---AMEDYEIDWVIGQGPAARTMRIPLPRFTLIGATTKAGQVSSPLHSR 186

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMD 220
                   I   +++ L  +I++        I     + ++ R  R +   A +L+ ++ 
Sbjct: 187 F--GITCHIDFYNENELSGIILRSSGIVGTEITPDAVS-LLARCSRGTPRIANRLLRRLR 243

Query: 221 NLALSRGMGI 230
           + A   G GI
Sbjct: 244 DFADVIGTGI 253


>gi|312216774|emb|CBX96724.1| similar to cell division control protein 48 [Leptosphaeria
           maculans]
          Length = 830

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 265 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 324

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 325 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 384

Query: 155 L 155
           L
Sbjct: 385 L 385



 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 41/176 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PSR V+  GP G+GK+ LA   +++  +                   SNI    D     
Sbjct: 539 PSRGVLFYGPPGTGKTLLAKAVANECAANFISIKGPELLSMWFGESESNIRDIFDKARAA 598

Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
               V L+++D +  +                 QL   ++ +    +  ++ A   P   
Sbjct: 599 APCVVFLDELDSIAKSRGGSQGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 658

Query: 152 GVCL--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQR 204
              L  P    RL   T+V + LPD      ++      R+  +   +   +I   
Sbjct: 659 DNALCRP---GRLD--TLVYVPLPDQASRASIL--KAQLRKTPVADDVNIDFIAAN 707


>gi|311031508|ref|ZP_07709598.1| Holliday junction DNA helicase RuvB [Bacillus sp. m3-13]
          Length = 337

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLAAIIANEMGVQLRTTAGPAIERPGDLAAILSALEPGDVLFIDEIHR 115

Query: 127 FH 128
            H
Sbjct: 116 LH 117


>gi|259502971|ref|ZP_05745873.1| AAA family ATPase [Lactobacillus antri DSM 16041]
 gi|259169096|gb|EEW53591.1| AAA family ATPase [Lactobacillus antri DSM 16041]
          Length = 433

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 67  VILVGPSGSGKSCLANI--------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           ++L GP GSGK+ LA +        +   + S +     + L     D    +LL++I  
Sbjct: 44  LLLWGPPGSGKTTLAYVMSQTLQLPFEKFNASIQNKGQLQKLVDAHPDESFVLLLDEIHR 103

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
           L               +    LL+   T      +  P + SR +      I       +
Sbjct: 104 LTKPLQDYLLPY---LENGHILLVGTTTENPIMAIQ-PAIRSRCQIFEFFPIGA---KAI 156

Query: 179 EKVIVKMFADR-QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
           E V+V+  AD     +  + A  I       +  +  ++D +
Sbjct: 157 EPVLVRAAADHLGFTLPPEQAHAIANSGNGDVRVSLNILDTL 198


>gi|148269554|ref|YP_001244014.1| recombination factor protein RarA/unknown domain fusion protein
           [Thermotoga petrophila RKU-1]
 gi|147735098|gb|ABQ46438.1| Appr-1-p processing domain protein [Thermotoga petrophila RKU-1]
          Length = 599

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 29/179 (16%)

Query: 68  ILVGPSGSGKS----CLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVL-LE 114
           IL GP GSGK+     L   ++ +           +   N+ K  + +    +K +L L+
Sbjct: 46  ILYGPPGSGKTSVFSLLKRYFNGEVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLD 105

Query: 115 DIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +I  L+ N   +   H+     +    +L+   T   S+ +  P L SR     ++    
Sbjct: 106 EIHRLNKNQQMVLVSHV-----ERGDIVLVATTTENPSFAIV-PALLSR---CRILYFKK 156

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD--NLALSRGMG 229
             D+ L K++ K     ++ +++     IV+  E     A KL++ ++  + A      
Sbjct: 157 LSDEDLMKILKKATRVLKLDLEETAEKAIVKHSE---GDARKLLNTLEIVHQAFKNKRA 212


>gi|116805237|gb|ABK27669.1| putative ATPase (related to helicase subunit of Holliday junction
           resolvase) [Lactobacillus paracasei]
          Length = 295

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 21/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +   GP G GK+ LA I + ++++    FS +   +  I            +  +  V +
Sbjct: 15  LNFWGPPGVGKTTLARIIARRTKAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 74

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ V    L SR +   V  +   
Sbjct: 75  DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 127

Query: 174 DDDFLEKVIVKMFAD-RQ 190
               L  ++ +   D R 
Sbjct: 128 TSAELVDLLQRALKDPRG 145


>gi|268532274|ref|XP_002631265.1| Hypothetical protein CBG03070 [Caenorhabditis briggsae]
          Length = 807

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 515 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 571



 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 27/120 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ S  F                SN+ K+ +    +
Sbjct: 243 PPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKN 302

Query: 107 TRKPVLLEDIDLLDFNDT-----------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
               + +++ID +                QL  +++ +    + +++ A   P S    L
Sbjct: 303 QPAILFIDEIDAIAPKREKTNGEVERIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGAL 362


>gi|320590905|gb|EFX03346.1| vacuolar sorting ATPase [Grosmannia clavigera kw1407]
          Length = 427

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   + +++ST FS  +  L S  +   + ++ +        
Sbjct: 169 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLVKQ-------- 220

Query: 123 DTQLFHIINSIHQYDSSLLM 142
                 + N   +   S++ 
Sbjct: 221 ------LFNMARENKPSIIF 234


>gi|325107575|ref|YP_004268643.1| microtubule-severing ATPase [Planctomyces brasiliensis DSM 5305]
 gi|324967843|gb|ADY58621.1| Microtubule-severing ATPase [Planctomyces brasiliensis DSM 5305]
          Length = 447

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L GP G GK+ LA   + +  ++ FS
Sbjct: 209 ILLYGPPGCGKTHLARATAGEIEASFFS 236


>gi|300175375|emb|CBK20686.2| unnamed protein product [Blastocystis hominis]
          Length = 422

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + VIL G  G+GK+ LA   ++K+ +T    +   L         P L+ DI     +
Sbjct: 200 PPKGVILYGEPGTGKTLLAKAVANKTSATFLRLVGSELVQKY-AGEGPKLVRDIFRTARD 258


>gi|300709027|ref|XP_002996682.1| hypothetical protein NCER_100180 [Nosema ceranae BRL01]
 gi|239606002|gb|EEQ83011.1| hypothetical protein NCER_100180 [Nosema ceranae BRL01]
          Length = 397

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V++ GP G+GK+ +A   + K+ +T        L  + I     ++ +
Sbjct: 177 PPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRD 228


>gi|224096592|ref|XP_002310664.1| predicted protein [Populus trichocarpa]
 gi|222853567|gb|EEE91114.1| predicted protein [Populus trichocarpa]
          Length = 655

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ LA   + ++ +   S    +L S
Sbjct: 387 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 426


>gi|242023130|ref|XP_002431989.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517340|gb|EEB19251.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 942

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 35/140 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R  +L GP G GK+ LA   + +         A  L                D  +  
Sbjct: 256 PPRGFLLHGPPGCGKTLLATAIAGELDVELIQISAPELIGGVSGESEERIRELFDRAVES 315

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
               + ++++D +  N        N+  + +  ++            CL +L ++     
Sbjct: 316 APCVLFIDEVDAIMQNRQ------NAQREMERRIV-------AQLLTCLDELNTKENGDL 362

Query: 167 VVKISL------PDDDFLEK 180
           V+ I         D      
Sbjct: 363 VLVIGATNRPDSLDPALRRA 382



 Score = 37.4 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           +++ GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 701 ILICGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAV 746


>gi|213512535|ref|NP_001134354.1| 26S protease regulatory subunit S10B [Salmo salar]
 gi|209732644|gb|ACI67191.1| 26S protease regulatory subunit S10B [Salmo salar]
          Length = 389

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|254424470|ref|ZP_05038188.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196191959|gb|EDX86923.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 630

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 68/215 (31%), Gaps = 47/215 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGTPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCI 269

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A          L
Sbjct: 270 IFIDEIDAVGRSRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADVLDSAL 329

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD     +V+     D+   +   L    I +R       
Sbjct: 330 ------LRPGRFDRQVSVDPPDIKGRREVLEVHARDK--KVSDDLSLDAIARRTP-GFTG 380

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           A  L + ++  A+       R  A  +L+     D
Sbjct: 381 A-DLANLLNEAAILTARR--RKEAVTMLEIDDAID 412


>gi|160331747|ref|XP_001712580.1| prsS4 [Hemiselmis andersenii]
 gi|159766029|gb|ABW98255.1| prsS4 [Hemiselmis andersenii]
          Length = 409

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++++T F      L    +     ++ E
Sbjct: 187 PPKGVILYGEPGTGKTLLAKAVANRTKATFFRIAGSELVQKFLGDGPKLVRE 238


>gi|119512416|ref|ZP_01631499.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
 gi|119462945|gb|EAW43899.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
          Length = 611

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA   + ++R+         L S  +   +  + E
Sbjct: 394 ILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRE 441



 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P+  V+LVGPSG+GK+  A   +++      +               + L +I     K 
Sbjct: 124 PTHGVLLVGPSGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKN 183

Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID L  + +             L  +++   Q    +L+ A   P      
Sbjct: 184 APCIIFIDEIDSLAPDRSAVEGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPA 243

Query: 155 L 155
           L
Sbjct: 244 L 244


>gi|14520405|ref|NP_125880.1| proteasome-activating nucleotidase [Pyrococcus abyssi GE5]
 gi|20532218|sp|Q9V287|PAN_PYRAB RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|5457620|emb|CAB49111.1| 26S protease regulatory subunit 4 [Pyrococcus abyssi GE5]
          Length = 399

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ +A   + +  +T    +   L    I     ++ E
Sbjct: 173 PPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHE 224


>gi|21911250|ref|NP_665518.1| recombination factor protein RarA [Streptococcus pyogenes MGAS315]
 gi|28896626|ref|NP_802976.1| recombination factor protein RarA [Streptococcus pyogenes SSI-1]
 gi|21905463|gb|AAM80321.1| putative chromosome segregation helicase [Streptococcus pyogenes
           MGAS315]
 gi|28811880|dbj|BAC64809.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 422

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +        +T      + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                + +++M   T    +    P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++  I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|15825813|pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
          Length = 334

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I + + ++         L            LE  D+L  ++   
Sbjct: 54  VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111

Query: 127 FHIINSIHQYDSSLLMTA 144
            H +N   +    LL +A
Sbjct: 112 -HRLNKAVEE---LLYSA 125


>gi|116179646|ref|XP_001219672.1| hypothetical protein CHGG_00451 [Chaetomium globosum CBS 148.51]
 gi|88184748|gb|EAQ92216.1| hypothetical protein CHGG_00451 [Chaetomium globosum CBS 148.51]
          Length = 834

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 582 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 631


>gi|83858523|ref|ZP_00952045.1| ATPase, AAA family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853346|gb|EAP91198.1| ATPase, AAA family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 438

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 22/142 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ +A + ++++    F  I+     +  D +K              T L
Sbjct: 55  LILWGPPGVGKTTIARLLAERAG-LEFDAISAVFSGVA-DLKKAFDRARARRQAGRGTLL 112

Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q            +L+      P          L SR     V+ +  
Sbjct: 113 FVDEIHRFNRAQQDGFLPVAEEGIITLVGATTENPSFELNAA---LLSR---CQVMVLKR 166

Query: 173 PDDDFLEKVIVKMFADRQIFID 194
            D + LEK++    A+    + 
Sbjct: 167 LDAEALEKLLRCAEAEEGTTLP 188


>gi|317485616|ref|ZP_07944492.1| ABC transporter [Bilophila wadsworthia 3_1_6]
 gi|316923153|gb|EFV44363.1| ABC transporter [Bilophila wadsworthia 3_1_6]
          Length = 671

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--------SRVVILVG 71
           +P+ K ++L F +P      +  L V      A    D    WP         + + LVG
Sbjct: 300 RPEAKRKELSFKWPEPPKADKTILSVAD---LAFAFPDGVSLWPPLTFTIYRGQRIALVG 356

Query: 72  PSGSGKSCLANIWSDK 87
            +G GKS L  I + +
Sbjct: 357 HNGCGKSTLLKILAGR 372


>gi|298484614|ref|ZP_07002719.1| ISPsy4, transposition helper protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160871|gb|EFI01887.1| ISPsy4, transposition helper protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 218

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 25/112 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------------T 107
           ++ +GPSG GKS LA   + ++          +   +++                     
Sbjct: 104 IVFLGPSGVGKSHLAIALAYRAVMAGIKTRFVTAADLMLQLTAAHRQERLKEYFSRVVMA 163

Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVSWGVCL 155
              +++++I  L F  ++  LF   N +       SL++T+      W   L
Sbjct: 164 PGLLVIDEIGYLPFGRDEANLF--FNVVAKRYEQGSLILTSNLPFTQWAGTL 213


>gi|259130016|gb|ACV95481.1| non-structural polyprotein [Calicivirus isolate Geel 2008/Belgium]
          Length = 1930

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
           +IL GP+G GK+ LA   + +  S + S +  ++D     T   V + D
Sbjct: 620 IILTGPAGCGKTTLAYAIASRLSSQKPSVLNLNIDHHDAYTGNEVCIID 668


>gi|260513687|ref|YP_003212822.1| non-structural polyprotein [Calicivirus isolate Allston 2008/US]
 gi|259130010|gb|ACV95476.1| non-structural polyprotein [Calicivirus isolate Allston 2008/US]
          Length = 1931

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
           +IL GP+G GK+ LA   + +  S + S +  ++D     T   V + D
Sbjct: 621 IILTGPAGCGKTTLAYAIASRLSSQKPSVLNLNIDHHDAYTGNEVCIID 669


>gi|260513683|ref|YP_003212819.1| non-structural polyprotein [Calicivirus isolate Allston 2009/US]
 gi|259130006|gb|ACV95473.1| non-structural polyprotein [Calicivirus isolate Allston 2009/US]
          Length = 1931

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
           +IL GP+G GK+ LA   + +  S + S +  ++D     T   V + D
Sbjct: 621 IILTGPAGCGKTTLAYAIASRLSSQKPSVLNLNIDHHDAYTGNEVCIID 669


>gi|240275902|gb|EER39415.1| chromosome transmission fidelity protein [Ajellomyces capsulatus
           H143]
          Length = 939

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +V++L GP G GK+ LA++ + ++        ++  +S D +    R  V  E++  +  
Sbjct: 263 KVLLLTGPPGLGKTTLAHVCAKQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVTM 322

Query: 122 N 122
           +
Sbjct: 323 D 323


>gi|225574008|ref|ZP_03782653.1| hypothetical protein RUMHYD_02104 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038738|gb|EEG48984.1| hypothetical protein RUMHYD_02104 [Blautia hydrogenotrophica DSM
           10507]
          Length = 617

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 44/139 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 205 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCI 264

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++        +++ A   P S      
Sbjct: 265 VFIDEIDTIGKKRDGQVGGNDEREQTLNQLLTEMDGFDGSKGVVILAATNRPDSLDPALL 324

Query: 152 ---------GVCLPDLCSR 161
                     V LPDL  R
Sbjct: 325 RPGRFDRRIPVELPDLQGR 343


>gi|198285437|gb|ACH85257.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Salmo
           salar]
          Length = 387

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 164 PPKGCLLYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIRE-------- 215

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 216 ------MFNYARDHQ 224


>gi|221060877|ref|XP_002262008.1| 26S proteasome regulatory subunit 7 [Plasmodium knowlesi strain H]
 gi|193811158|emb|CAQ41886.1| 26S proteasome regulatory subunit 7, putative [Plasmodium knowlesi
           strain H]
          Length = 441

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 195 PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMAKSK 254

Query: 113 ------LEDIDLLD---FNDTQ---------LFHIINSI----HQYDSSLLMTARTF--- 147
                 ++++D +     +++          +  I+N +    ++ +  +LM        
Sbjct: 255 KACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTL 314

Query: 148 ------PVS----WGVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 315 DSALVRPGRIDRKIEFSLPDLEGR 338


>gi|156102703|ref|XP_001617044.1| 26S proteasome ATPase subunit [Plasmodium vivax SaI-1]
 gi|148805918|gb|EDL47317.1| 26S proteasome ATPase subunit, putative [Plasmodium vivax]
          Length = 420

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 195 PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMAKSK 254

Query: 113 ------LEDIDLLD---FNDTQ---------LFHIINSI----HQYDSSLLMTARTF--- 147
                 ++++D +     +++          +  I+N +    ++ +  +LM        
Sbjct: 255 KACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTL 314

Query: 148 ------PVS----WGVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 315 DSALVRPGRIDRKIEFSLPDLEGR 338


>gi|221135429|ref|ZP_03561732.1| recombination factor protein RarA [Glaciecola sp. HTCC2999]
          Length = 440

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 14/76 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF------SNIAKSLDSILIDTRKPVLLEDIDLLD 120
           ++L GP G+GK+ LA I +    +         S +    D++ +     V +  +D + 
Sbjct: 46  MLLWGPPGTGKTTLAQIIAKHIDANLIVLSAVTSGVKDIRDAMAMTHPGVVTIVFVDEV- 104

Query: 121 FNDTQLFHIINSIHQY 136
                  H  N   Q 
Sbjct: 105 -------HRFNKSQQD 113


>gi|92119343|ref|YP_579072.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
 gi|91802237|gb|ABE64612.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14]
          Length = 287

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIW---SDKSRSTR----FSNIAKSLDSILIDTRKPVLLEDI 116
            R V+LVG +G+GKS LA        +S +        ++   L++   + R+  + E +
Sbjct: 98  QRNVVLVGGTGTGKSHLAIAIVRSCIRSGARGRFYNVVDLVNRLETETRNGRQGRIAEHL 157

Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
              D +  ++             LFH+++ +++  +S+++T       W 
Sbjct: 158 TRMDFIVLDELGYLPFAQAGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 206


>gi|37527728|ref|NP_931073.1| ATP-dependent protease ATP-binding subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|46576407|sp|Q7N0L4|CLPX_PHOLL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|36787164|emb|CAE16240.1| ATP-dependent Clp protease ATP-binding subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 423

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+    VP +++N  P           P  +    DD ++                
Sbjct: 46  DIIREEIKELVPHRERNALPT----------PHEIRQHLDDYVIGQETAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R+ ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RYLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|15825805|pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
          Length = 334

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I + + ++         L            LE  D+L  ++   
Sbjct: 54  VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111

Query: 127 FHIINSIHQYDSSLLMTA 144
            H +N   +    LL +A
Sbjct: 112 -HRLNKAVEE---LLYSA 125


>gi|328873702|gb|EGG22069.1| VCP-like ATPase [Dictyostelium fasciculatum]
          Length = 780

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS  VIL GPSG GK+ L    + K      S
Sbjct: 567 PSSGVILYGPSGCGKTLLVRAAAAKMNVNFIS 598


>gi|327262665|ref|XP_003216144.1| PREDICTED: nuclear valosin-containing protein-like [Anolis
           carolinensis]
          Length = 844

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 42/168 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R  +L GP G GK+ LA   + +         A  +                D  +  
Sbjct: 291 PPRGFLLHGPPGCGKTLLAQAIAGELELPILKVAATEIVSGVSGESEQKLRELFDQAVTS 350

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + L++ID +                 QL   +   N++      L++ A   P S 
Sbjct: 351 APCLLFLDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNLAGTAQVLVIGATNRPDSL 410

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
              L       +A      + + +PD+   EK++  +   R++ + + 
Sbjct: 411 EPALR------RAGRFDREICLGIPDEAAREKILKTLC--RKLRLRES 450



 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   +++S     S     L ++ +   +  +
Sbjct: 606 ILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 651


>gi|307206357|gb|EFN84409.1| Nuclear valosin-containing protein-like [Harpegnathos saltator]
          Length = 861

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R  +L GP G GK+ LA+  + +         A  L + +    +  + E  D  
Sbjct: 246 PPRGFLLHGPPGCGKTLLAHAVAGELNMPLLKVAAPELIAGVSGESEARIRELFDQA 302



 Score = 37.1 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 604 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESEKAV 649


>gi|258513174|ref|YP_003189430.1| transposase [Acetobacter pasteurianus IFO 3283-01]
 gi|258513239|ref|YP_003189495.1| transposase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635077|dbj|BAI01051.1| transposase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635142|dbj|BAI01116.1| transposase [Acetobacter pasteurianus IFO 3283-01]
 gi|256638132|dbj|BAI04099.1| transposase [Acetobacter pasteurianus IFO 3283-03]
 gi|256638197|dbj|BAI04164.1| transposase [Acetobacter pasteurianus IFO 3283-03]
 gi|256641186|dbj|BAI07146.1| transposase [Acetobacter pasteurianus IFO 3283-07]
 gi|256641251|dbj|BAI07211.1| transposase [Acetobacter pasteurianus IFO 3283-07]
 gi|256644241|dbj|BAI10194.1| transposase [Acetobacter pasteurianus IFO 3283-22]
 gi|256644306|dbj|BAI10259.1| transposase [Acetobacter pasteurianus IFO 3283-22]
 gi|256647296|dbj|BAI13242.1| transposase [Acetobacter pasteurianus IFO 3283-26]
 gi|256647361|dbj|BAI13307.1| transposase [Acetobacter pasteurianus IFO 3283-26]
 gi|256650349|dbj|BAI16288.1| transposase [Acetobacter pasteurianus IFO 3283-32]
 gi|256650414|dbj|BAI16353.1| transposase [Acetobacter pasteurianus IFO 3283-32]
 gi|256653340|dbj|BAI19272.1| transposase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653405|dbj|BAI19337.1| transposase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656393|dbj|BAI22318.1| transposase [Acetobacter pasteurianus IFO 3283-12]
 gi|256656458|dbj|BAI22383.1| transposase [Acetobacter pasteurianus IFO 3283-12]
          Length = 257

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWS--------DKSRSTRFSNIAKSLDSILIDTRKPVLLE---D 115
           V+L+G  G+GK+ LA   +         K+R     ++  +L+      R   + +    
Sbjct: 103 VVLIGGPGTGKTHLATALAIQAITHHRKKARFWSTVDLVNALEQEKTANRAGQIADRLLR 162

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +DL+  ++             LFH+++ +++  +S+++T       WG
Sbjct: 163 LDLVILDELGYLPFSASGGALLFHLLSRLYER-TSVIITTNLSFSEWG 209


>gi|242091720|ref|XP_002436350.1| hypothetical protein SORBIDRAFT_10g000870 [Sorghum bicolor]
 gi|241914573|gb|EER87717.1| hypothetical protein SORBIDRAFT_10g000870 [Sorghum bicolor]
          Length = 775

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 25/101 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P   ++L GP G GK+ LA+  ++++    +   A  + S +    +             
Sbjct: 229 PVAGLLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRGLFQKAYRT 288

Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144
               V +++ID +           N   + +  +   LMT 
Sbjct: 289 APSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 323


>gi|226290677|gb|EEH46161.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis
           Pb18]
          Length = 716

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 492 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 537



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  +  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEA 266


>gi|221116355|ref|XP_002163196.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 745

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           P  V+ L+GP G+GK+ LA   + ++    F       D + +     
Sbjct: 343 PGGVL-LIGPPGTGKTLLARAIAGEADVPFFFASGSEFDEMFVGVGAA 389


>gi|186489959|ref|NP_001117460.1| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|332194398|gb|AEE32519.1| P-loop containing NTPase domain-containing protein [Arabidopsis
           thaliana]
          Length = 981

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ LA   + ++ +   S    +L S
Sbjct: 726 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 765


>gi|86357338|ref|YP_469230.1| recombination factor protein RarA [Rhizobium etli CFN 42]
 gi|86281440|gb|ABC90503.1| putative ATPase associated with chromosome architecture/replication
           protein [Rhizobium etli CFN 42]
          Length = 438

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 31/201 (15%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111
           R+I+   S     +I  GP G+GK+ +A + S ++     + S I   +  +        
Sbjct: 47  RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAA- 102

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
               +  +D   T LF    H  N           +  + +L+  T              
Sbjct: 103 ---RMRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
           L SR   A V+     D++ LE+++ +      R + +  +  A +++  +        L
Sbjct: 157 LLSR---ARVLTFKSHDEESLEELLTRAEAIEQRPLPLTGEARASLIRMADGDGRAVLTL 213

Query: 216 VDKMDNLALSRGMGITRSLAA 236
            +++   A       T +L  
Sbjct: 214 AEEVWRAAREGESFDTEALTR 234


>gi|16125532|ref|NP_420096.1| recombination factor protein RarA [Caulobacter crescentus CB15]
 gi|221234279|ref|YP_002516715.1| recombination factor protein RarA [Caulobacter crescentus NA1000]
 gi|13422618|gb|AAK23264.1| ATPase, AAA family [Caulobacter crescentus CB15]
 gi|220963451|gb|ACL94807.1| ATPase, AAA family [Caulobacter crescentus NA1000]
          Length = 433

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ +A + + K+    F  I+     +  D +K         +    T L
Sbjct: 55  MILWGPPGTGKTTIARLLA-KAGGYEFMQISAVFSGVA-DLKKAFEQARARRMAGQSTLL 112

Query: 127 F----HIINSIHQYD 137
           F    H  N   Q  
Sbjct: 113 FVDEIHRFNRAQQDG 127


>gi|116753926|ref|YP_843044.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta
           thermophila PT]
 gi|116665377|gb|ABK14404.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT]
          Length = 721

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + V+L GP G+GK+ +A   + ++ +T             +    + L  I  D +K 
Sbjct: 208 PPKGVLLHGPPGTGKTLIARAVASETDATFTAISGPEIMSRYYGESEQRLRQIFEDAQKS 267

Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 268 APSIIFIDEIDSIAPKREEVLGDLERRVVAQLLSLMDGLTSRGEVIVIAATNRPNALDPA 327

Query: 155 L 155
           L
Sbjct: 328 L 328


>gi|159112079|ref|XP_001706269.1| 26S proteasome ATPase subunit S4, putative [Giardia lamblia ATCC
           50803]
 gi|157434364|gb|EDO78595.1| 26S proteasome ATPase subunit S4, putative [Giardia lamblia ATCC
           50803]
 gi|158440755|gb|ABW38702.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis]
 gi|158440798|gb|ABW38708.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis]
 gi|158441093|gb|ABW38714.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis]
 gi|158441236|gb|ABW38720.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis]
          Length = 447

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS-----------TRFSNIAKSLDSILIDTRKP- 110
           P R  IL GPSG+GKS LA   ++++ +            ++S     L   L    K  
Sbjct: 226 PPRSCILHGPSGTGKSLLARACANETSACYMKMAGSELIQKYSGEGPRLVRELFKAAKAN 285

Query: 111 ----VLLE----------DIDLLDFNDTQ--LFHIINSI----HQYDSSLLMT------- 143
               + ++          D D     + Q  +  ++N +          ++M        
Sbjct: 286 QPTIIFIDEVDAVGRKRYDADSGGAREIQRTMLELLNQLDGFDRTEGVKVIMATNLIESL 345

Query: 144 ------ARTFPVSWGVCLPDLCSR 161
                 A        V LPDL +R
Sbjct: 346 DSALIRAGRIDRKIYVGLPDLTAR 369


>gi|332812092|ref|XP_514229.3| PREDICTED: LOW QUALITY PROTEIN: nuclear VCP-like [Pan troglodytes]
          Length = 860

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95
           P R V+L GP G GK+ LA+  +    S   + 
Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGAECSGMITA 329



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLD-SILIDTRKPVLLEDIDLL 119
           P+ V+ L GP G GK+ LA    +  R+ R  F     S    I  D    +     D  
Sbjct: 640 PAGVL-LAGPPGCGKTLLAKYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE 698

Query: 120 DFND----TQLFHIINSIHQYDSSLLMTARTFPVSWG--VCLPDLCSRLKAATVVKISLP 173
                    QL   ++ +       +M A   P      +  P    RL     V +  P
Sbjct: 699 TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRP---GRLDKTLFVGLPPP 755

Query: 174 DDDFLEKVIVKMFADRQIFIDKK 196
            D      I+K            
Sbjct: 756 ADRL---AILKTITKNGTKPPLD 775


>gi|331697055|ref|YP_004333294.1| IstB domain-containing protein ATP-binding protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951744|gb|AEA25441.1| IstB domain protein ATP-binding protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 255

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 32/124 (25%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLA--------------------NIWSDKSRS 90
            A+R +D+        VIL GP G GK+ +A                     + ++ +  
Sbjct: 92  AALRWLDA-----GESVILTGPVGVGKTFVAQALGHQAIRHGADVRFAKTSRVLAELAGG 146

Query: 91  TRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147
               + A+ L  +       ++L+D    +L       L+ +IN   +   SL++T+   
Sbjct: 147 HADHSWARRLRELARPAV--LILDDFGMRELTAAQADDLYELIN--ERAGRSLVLTSNRS 202

Query: 148 PVSW 151
           PV W
Sbjct: 203 PVDW 206


>gi|302812777|ref|XP_002988075.1| hypothetical protein SELMODRAFT_426754 [Selaginella moellendorffii]
 gi|300144181|gb|EFJ10867.1| hypothetical protein SELMODRAFT_426754 [Selaginella moellendorffii]
          Length = 440

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P R  +L GP G+GKS LA   + ++ ST +S                 +A         
Sbjct: 166 PWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVANLFQMARDS 225

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    +     L++ A   P S  
Sbjct: 226 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYSLD 285

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 286 HAVRRRFDKRIYIPLPDLKAR 306


>gi|289613840|emb|CBI59323.1| unnamed protein product [Sordaria macrospora]
          Length = 902

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 610 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 659


>gi|255939672|ref|XP_002560605.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585228|emb|CAP92903.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 727

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 504 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 549



 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G GK+ +AN ++ +      S  A S+ S +    +  L E
Sbjct: 194 PPRGVLLHGPPGCGKTLIANAFAAELGVPFISISAPSVVSGMSGESEKALRE 245


>gi|260803780|ref|XP_002596767.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae]
 gi|229282027|gb|EEN52779.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae]
          Length = 392

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + +        ++ ++    I     ++ E
Sbjct: 169 PPKGVLLYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARLIRE 220


>gi|168019251|ref|XP_001762158.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686562|gb|EDQ72950.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP 110
           P R ++L GP G+GKS LA   + ++             S  +    ++L ++     + 
Sbjct: 37  PHRGILLYGPPGTGKSTLARAAACEAGVPLFAINGPDVVSQFYGESEEALRAVFTAAEEA 96

Query: 111 ----VLLEDIDLLD 120
               V+++++D + 
Sbjct: 97  APSVVVIDEVDAIA 110



 Score = 35.5 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R V+L GP G  K+ LA   + ++     +     L
Sbjct: 305 PIRGVLLYGPPGCSKTLLARACASEAGLNFIAVKGPEL 342


>gi|148656011|ref|YP_001276216.1| ATPase central domain-containing protein [Roseiflexus sp. RS-1]
 gi|148568121|gb|ABQ90266.1| AAA ATPase, central domain protein [Roseiflexus sp. RS-1]
          Length = 458

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 54  RLIDS--WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           R++D     +  +R + L GP G+GK+ +A   ++          A  +D  +I    P+
Sbjct: 164 RMLDRIGPAANSARSLFLYGPPGNGKTTIAEGIANMLGGHVLIPYAVEVDGQIIKVFDPL 223

Query: 112 ---LLEDIDLLDFNDTQL 126
              L+E        +  +
Sbjct: 224 NHQLIEQPATAAAREPAV 241


>gi|94501620|ref|ZP_01308137.1| chromosomal replication initiation protein [Oceanobacter sp. RED65]
 gi|94426303|gb|EAT11294.1| chromosomal replication initiation protein [Oceanobacter sp. RED65]
          Length = 216

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 3/50 (6%)

Query: 37  GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI 83
             + D  +   + + A      +          + + G  G GK+ L + 
Sbjct: 159 RFTFDTFVEGKSNQLAHAAAQQVSQNAGGSYNPLFIYGGVGLGKTHLMHA 208


>gi|71665863|ref|XP_819897.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70885218|gb|EAN98046.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 657

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 37/155 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110
            +LVGP G GK+ LA   + ++    F       D + +                     
Sbjct: 222 ALLVGPPGCGKTMLAKAIAKEAGVNFFYATGSEFDEMYVGVGSRRVRELFAAAKANSPAL 281

Query: 111 VLLEDIDLLDFNDTQLFHII-----NSIHQY-------DSSLLMTARTFPVSWGVCLPDL 158
           + +++ID L    ++  H       N +          +S +++ A   P +    L   
Sbjct: 282 IFIDEIDALGGKRSRTDHAYSRMTLNQLLAEMDGFSSKESIIVLAATNTPDALDKAL--- 338

Query: 159 CSRL-KAATVVKISLPD----DDFLEKVIVKMFAD 188
            +R  +  T + +  PD    ++ LE  + K+ AD
Sbjct: 339 -TRPGRFDTTISVDPPDMKGREEVLEVYLNKVKAD 372


>gi|254181008|ref|ZP_04887606.1| ATPase, AAA family [Burkholderia pseudomallei 1655]
 gi|184211547|gb|EDU08590.1| ATPase, AAA family [Burkholderia pseudomallei 1655]
          Length = 436

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             +D L +++ K   D     +  D K    +V   +     A + ++ ++  
Sbjct: 163 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211


>gi|167760075|ref|ZP_02432202.1| hypothetical protein CLOSCI_02447 [Clostridium scindens ATCC 35704]
 gi|167662368|gb|EDS06498.1| hypothetical protein CLOSCI_02447 [Clostridium scindens ATCC 35704]
          Length = 245

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 24/113 (21%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTR----FSNIAKSLDSILIDTRK--------------- 109
           + G +G+GKS   +    ++        F + +  LD +++  R+               
Sbjct: 107 IYGVTGAGKSYFLSACCVEACRRNYRCKFVDYSDLLDELIVLNRQEDLNKYRKRIRYYAR 166

Query: 110 --PVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
              + ++D  +  +++     L+H+I       +S L T +  P  WG  L D
Sbjct: 167 IQLLFIDDFAISRYSEEGIKILYHLIKLRDDLGTSTLFTCQYSPDEWGNQLSD 219


>gi|153008044|ref|YP_001369259.1| ATP-binding domain-containing protein IstB [Ochrobactrum anthropi
           ATCC 49188]
 gi|151559932|gb|ABS13430.1| IstB domain protein ATP-binding protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 258

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 20/111 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------TRFSNIAKSLDSILIDTRKP--------- 110
           +I+ G +G+GKS LA     ++          R   + + L    +D R P         
Sbjct: 103 LIVCGKTGTGKSWLACALGRQAARHDHSVLYVRAPRLFEDLAMAKLDGRYPRLMNRLMKV 162

Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQ--YDSSLLMTARTFPVSWGVCLPD 157
             ++L+D      ++ Q FH+   I +     S L+TA+    +W   + D
Sbjct: 163 QLLILDDFATHVLSEQQRFHLFEIIEERYQRRSTLITAQVPVNAWHDLIAD 213


>gi|84489226|ref|YP_447458.1| replication factor C large subunit [Methanosphaera stadtmanae DSM
           3091]
 gi|110287810|sp|Q2NH88|RFCL_METST RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|84372545|gb|ABC56815.1| RfcL [Methanosphaera stadtmanae DSM 3091]
          Length = 534

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 19/100 (19%)

Query: 48  AIEQAVRLIDSWPS-W----PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
              +A   I+ W + W    P + ++L+GP G GK+ +A++   +         +++++ 
Sbjct: 17  GNAKAKAQIEVWANKWSKGVPQKPLLLMGPPGIGKTTIAHLVGKEY-------FSETIEV 69

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
              D R   +++           LFH           LL+
Sbjct: 70  NASDKRSYDIIKSSIGEAAQTRSLFH-------SGYKLLI 102


>gi|72384659|gb|AAZ67621.1| chromosomal replication initiator protein putative [Haemophilus
           parasuis 29755]
          Length = 204

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 40  RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
            D  ++         A   +   P+     + + G  G GK+ L + 
Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHA 166


>gi|24987363|pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
          Length = 318

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113
           P   ++L GP G GK+ LA++ + +           +        ++ +  ++    + +
Sbjct: 37  PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 96

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157
           ++I  L     +  H+  ++  +   +++       +  + LP                 
Sbjct: 97  DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      ++   P++  L + +++      + I ++ A  I +R   ++  A++L  
Sbjct: 155 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212

Query: 218 KMDNLALSRGMGI 230
           ++ + A   G  +
Sbjct: 213 RVRDFAQVAGEEV 225


>gi|13399857|pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
 gi|13399858|pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
          Length = 324

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113
           P   ++L GP G GK+ LA++ + +           +        ++ +  ++    + +
Sbjct: 37  PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 96

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157
           ++I  L     +  H+  ++  +   +++       +  + LP                 
Sbjct: 97  DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      ++   P++  L + +++      + I ++ A  I +R   ++  A++L  
Sbjct: 155 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212

Query: 218 KMDNLALSRGMGI 230
           ++ + A   G  +
Sbjct: 213 RVRDFAQVAGEEV 225


>gi|15644476|ref|NP_229528.1| Holliday junction DNA helicase RuvB [Thermotoga maritima MSB8]
 gi|2498878|sp|Q56313|RUVB_THEMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15825804|pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
           Migration Motor
 gi|4982307|gb|AAD36795.1|AE001812_5 Holliday junction DNA helicase [Thermotoga maritima MSB8]
 gi|1063668|gb|AAB03727.1| RuvB protein [Thermotoga maritima]
          Length = 334

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I + + ++         L            LE  D+L  ++   
Sbjct: 54  VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111

Query: 127 FHIINSIHQYDSSLLMTA 144
            H +N   +    LL +A
Sbjct: 112 -HRLNKAVEE---LLYSA 125


>gi|325093265|gb|EGC46575.1| chromosome transmission fidelity protein [Ajellomyces capsulatus
           H88]
          Length = 948

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +V++L GP G GK+ LA++ + ++        ++  +S D +    R  V  E++  +  
Sbjct: 263 KVLLLTGPPGLGKTTLAHVCAKQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVTM 322

Query: 122 N 122
           +
Sbjct: 323 D 323


>gi|298242539|ref|ZP_06966346.1| AAA family ATPase, CDC48 subfamily [Ktedonobacter racemifer DSM
           44963]
 gi|297555593|gb|EFH89457.1| AAA family ATPase, CDC48 subfamily [Ktedonobacter racemifer DSM
           44963]
          Length = 893

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 46/200 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P R V+L GP GSGK+ +A   +++  +   S                 + +        
Sbjct: 562 PPRGVLLAGPPGSGKTLIARALANQCEANFISIKGPELLSKWVGESEKGVREVFRRAKQA 621

Query: 107 TRKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG- 152
               V  ++ID L                  QL   ++ I   +  +++ A   P     
Sbjct: 622 APCLVFFDEIDALAPRRGSGMDGNVGDRLIAQLLTEMDGIEGREGVIVLAATNRPELIDP 681

Query: 153 -VCLP---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-- 206
            +  P   DL        VV++  P++D    +       R   I  ++ +  + R+   
Sbjct: 682 AILRPGRFDL--------VVELRYPNEDERRMIFDVHL--RGRPIASEVTSEELARLTDG 731

Query: 207 RSLVFAEKLVDKMDNLALSR 226
           RS    E +  +   LAL  
Sbjct: 732 RSGADIEAICRRAALLALRE 751



 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 28/117 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G+GK+ +A + + ++ +  F                S +          
Sbjct: 289 PPKGVLLYGPPGTGKTLIARVVAAETNAAFFVINGPEIINKFYGESESRLRSVFQEAQRQ 348

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
               + ++++D L                 QL  +++ +      +L+ A   P + 
Sbjct: 349 APSIIFIDELDALAPKRAESGGEVERRIVGQLLALMDGLASRGQIVLIGATNQPNAL 405


>gi|294141767|ref|YP_003557745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           violacea DSS12]
 gi|293328236|dbj|BAJ02967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           violacea DSS12]
          Length = 418

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 22/111 (19%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRLIDSWPSWPSRV---------VI 68
           K++Q     P  L    DD ++                     +  +           ++
Sbjct: 52  KQDQDKLPTPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLKN-SNPKDGVELGKSNIL 110

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           L+GP+GSGK+ LA  ++      RF ++  ++      T    + ED++ +
Sbjct: 111 LIGPTGSGKTLLAETFA------RFLDVPFTMADATTLTEAGYVGEDVENI 155


>gi|225561602|gb|EEH09882.1| cell division control protein [Ajellomyces capsulatus G186AR]
          Length = 751

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 29/117 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 253 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 312

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
           +   + +++ID +  N              QL  + + +    ++L+M A   P+SW
Sbjct: 313 SPAIIFIDEIDSIAPNRDKTNGEVERLVVSQLLTLKDGMKARFNALVMAA-PPPISW 368


>gi|225455284|ref|XP_002271615.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 867

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 37/143 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P + V+L GP G+GK+ LA   + +S +   +                 +A         
Sbjct: 115 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 174

Query: 107 TRKPVLLEDIDLLDFNDT---------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
               + ++++D                       L+    +  Q    +++ A   P   
Sbjct: 175 QPAIIFIDEVDTFLGQRRTTDHEAMANMKTEFMALWDGF-TTDQNARVMVLAATNRPSEL 233

Query: 152 GVCLPDLCSRLKAATVVKISLPD 174
              +  L  RL  A   +I +PD
Sbjct: 234 DEAI--LR-RLPQA--FEIGIPD 251


>gi|260812674|ref|XP_002601045.1| hypothetical protein BRAFLDRAFT_242422 [Branchiostoma floridae]
 gi|229286336|gb|EEN57057.1| hypothetical protein BRAFLDRAFT_242422 [Branchiostoma floridae]
          Length = 665

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + ++L GP G+GK+ +    + +S +T FS  A SL S  +   + ++
Sbjct: 423 PPKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKLV 472


>gi|198415591|ref|XP_002129627.1| PREDICTED: similar to GJ15827 [Ciona intestinalis]
          Length = 388

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   S +  +     ++ S+    I     ++ E        
Sbjct: 165 PPKGCLLYGPPGTGKTLLARAVSSQLDANFLKVVSSSIVDKYIGESARLIRE-------- 216

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 217 ------MFNYARDHQ 225


>gi|226504612|ref|NP_001142062.1| hypothetical protein LOC100274218 [Zea mays]
 gi|194706964|gb|ACF87566.1| unknown [Zea mays]
          Length = 359

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 66  PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 122


>gi|115911530|ref|XP_783737.2| PREDICTED: similar to fidgetin-like 1 [Strongylocentrotus
           purpuratus]
 gi|115955183|ref|XP_001188077.1| PREDICTED: similar to fidgetin-like 1 [Strongylocentrotus
           purpuratus]
          Length = 603

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDS---WP----------SWPSRVVILVGPSGSGKSCL 80
               I  DD+   + +E A + I     WP            P + ++L GP G+GK+ +
Sbjct: 321 HGPPIHWDDI---AGLEFAKKTIKEIVVWPMLRPDIFTGLRGPPKGLLLFGPPGTGKTLI 377

Query: 81  ANIWSDKSRSTRFSNIAKSLDS 102
               + +S +T FS  A SL S
Sbjct: 378 GKCIASQSGATFFSISASSLTS 399


>gi|15825807|pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
          Length = 334

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I + + ++         L            LE  D+L  ++   
Sbjct: 54  VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111

Query: 127 FHIINSIHQYDSSLLMTA 144
            H +N   +    LL +A
Sbjct: 112 -HRLNKAVEE---LLYSA 125


>gi|11559311|dbj|BAB18863.1| Ras like G protein Rad [Cynops pyrrhogaster]
          Length = 302

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   VIL+G  G GKSCLA I+     S        + D  ++   +   L   D+ + +
Sbjct: 84  PVYKVILLGEHGVGKSCLARIFGGIEDSHDIEEAGNTYDRSVVVDGEEACLLVFDIWEQD 143

Query: 123 DT 124
           +T
Sbjct: 144 ET 145


>gi|313888858|ref|ZP_07822518.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845031|gb|EFR32432.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 634

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS    +   + +                     
Sbjct: 205 ALLVGPPGTGKTLLAKAVASEAEVPFFSISGSAFVEMFVGLGAAKVRDLFKQAVEKAPCI 264

Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +           ND       QL   ++        +++ A   P S     
Sbjct: 265 IFIDEIDTIGKKRDGSGFSGNDEREQTLNQLLSEMDGFDAKAGVVILAATNRPDSLDPAL 324

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 325 LRPGRFDRRIPVELPDLKGR 344


>gi|312218275|emb|CBX98221.1| hypothetical protein [Leptosphaeria maculans]
          Length = 803

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+R ++L GP G+GK+ LA   + +S+ST F+  A SL S  +   + ++          
Sbjct: 548 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTSKFLGESEKLV---------- 597

Query: 123 DTQLFHI 129
              LF +
Sbjct: 598 -RALFQL 603


>gi|309790742|ref|ZP_07685291.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
 gi|308227233|gb|EFO80912.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6]
          Length = 653

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+LVGP G+GK+ LA   + ++    FS  A     + +      + +          
Sbjct: 212 RGVLLVGPPGTGKTLLAKAVAGEAGVPFFSTSASEFVELFVGVGASRVRD---------- 261

Query: 125 QLFHIINSIHQYDSSLLM 142
               + N   +   +++ 
Sbjct: 262 ----LFNQARRNGPAIVF 275


>gi|227821784|ref|YP_002825754.1| recombination factor protein RarA [Sinorhizobium fredii NGR234]
 gi|227340783|gb|ACP25001.1| ATPase, AAA family protein [Sinorhizobium fredii NGR234]
          Length = 436

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + S ++     + S I   +  +              
Sbjct: 49  ASGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMENGTVILVGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D+  LE+++ +        + +D      +++  +        L +++  
Sbjct: 160 -ARVLTFKAHDEASLEELLTRAEQAEGKPLPLDADARGSLIRMADGDGRAVLTLAEEVWR 218

Query: 222 LA 223
            A
Sbjct: 219 AA 220


>gi|225563313|gb|EEH11592.1| chromosome transmission fidelity protein [Ajellomyces capsulatus
           G186AR]
          Length = 948

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +V++L GP G GK+ LA++ + ++        ++  +S D +    R  V  E++  +  
Sbjct: 263 KVLLLTGPPGLGKTTLAHVCAKQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVTM 322

Query: 122 N 122
           +
Sbjct: 323 D 323


>gi|209736078|gb|ACI68908.1| 26S protease regulatory subunit 4 [Salmo salar]
          Length = 440

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 67/208 (32%), Gaps = 49/208 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146
                 +++ID +                  L  ++N +     + D  ++M        
Sbjct: 278 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTLLELLNQLDGFDSRGDVKVIMATNRIETL 337

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA--AYIVQR 204
            P        D          ++  LPD+    ++     +   + +   +     I+ +
Sbjct: 338 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFQIHTSR--MTVADDVTLDELILAK 387

Query: 205 MERSLVFAEKLVDKMDNLALSRGM-GIT 231
            + S    + +  +   +AL      +T
Sbjct: 388 DDLSGADIKAICTEAGLMALRERRMKVT 415


>gi|154281879|ref|XP_001541752.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411931|gb|EDN07319.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 982

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +V++L GP G GK+ LA++ + ++        ++  +S D +    R  V  E++  +  
Sbjct: 297 KVLLLTGPPGLGKTTLAHVCAKQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVTM 356

Query: 122 N 122
           +
Sbjct: 357 D 357


>gi|149622137|ref|XP_001521658.1| PREDICTED: similar to conserved ATPase domain protein 44, partial
           [Ornithorhynchus anatinus]
          Length = 400

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 177 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 228

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 229 ------MFNYARDHQ 237


>gi|144897904|emb|CAM74768.1| ATP-dependent Zn proteases [Magnetospirillum gryphiswaldense MSR-1]
          Length = 642

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 47/203 (23%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111
           +LVGP G+GK+ LA   + ++    F+        + +                     +
Sbjct: 194 LLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCII 253

Query: 112 LLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGVC 154
            +++ID +            ++ +    +N +          +  +L+ A   P      
Sbjct: 254 FIDEIDAVGRHRGAGLGGGNDERE--QTLNQMLVEMDGFESNEGVILIAATNRPDVLDPA 311

Query: 155 LPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           L  L   R     VV    PD    EK++      R++ +   +   I+ R       A 
Sbjct: 312 L--LRPGRFDRQIVV--PNPDILGREKILKVHM--RKVPLAPDVEPRIIARGTPGFSGA- 364

Query: 214 KLVDKMDNLAL----SRGMGITR 232
            L + ++  AL    +    +T 
Sbjct: 365 DLANLVNEAALLAARAGKRVVTM 387


>gi|134117618|ref|XP_772580.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255195|gb|EAL17933.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 626

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 24/148 (16%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSI------------LIDTRKPVLL 113
           IL GP G GK+ LA + +  S +     S  +     +            +   R  +++
Sbjct: 180 ILWGPPGCGKTTLARLIAKSSGADFKELSATSSGTQDVRQVFEKAKNGLQMTGRRTVLMI 239

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +     L        +     L+ A T   S+ V    L SR     V  +   
Sbjct: 240 DEIHRFNRAQQDLLLPY---VEKGWIQLIGATTENPSFKVNGA-LLSR---CQVFTLHAH 292

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYI 201
             + L+ ++       Q   + +   Y+
Sbjct: 293 SPESLQIILRNAV---QTISESEPIPYL 317


>gi|322707976|gb|EFY99553.1| AAA family ATPase [Metarhizium anisopliae ARSEF 23]
          Length = 809

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 553 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 602


>gi|307129928|ref|YP_003881944.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Dickeya dadantii 3937]
 gi|306527457|gb|ADM97387.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Dickeya dadantii 3937]
          Length = 424

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  S          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDSNNSIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|302830037|ref|XP_002946585.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis]
 gi|300268331|gb|EFJ52512.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis]
          Length = 428

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + ++ +         L  + I     ++ +
Sbjct: 208 PPKGVLLYGPPGTGKTLIARAVAAQTNAAFLKLAGPQLVQMFIGDGAKMVRD 259


>gi|225871301|ref|YP_002747248.1| ATPase [Streptococcus equi subsp. equi 4047]
 gi|225700705|emb|CAW95315.1| putative ATPase [Streptococcus equi subsp. equi 4047]
          Length = 423

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +        +T      + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDNKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD +          + ++   +++ A T    + V  P + SR     + ++     + 
Sbjct: 102 RLDKSKQDFLLP---LLEHGHIIMIGATTGNPFFSVT-PAIRSR---VQIFELEPLSPEE 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +++ +     D  R     + +D+    +I       L  A + +D
Sbjct: 155 IKQALKLAITDKERGFAFDVTLDEAAFDFIATATNGDLRAAYQSLD 200


>gi|255541358|ref|XP_002511743.1| Spastin, putative [Ricinus communis]
 gi|223548923|gb|EEF50412.1| Spastin, putative [Ricinus communis]
          Length = 518

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 278 PARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEGEKLV 327


>gi|218295885|ref|ZP_03496665.1| AAA ATPase central domain protein [Thermus aquaticus Y51MC23]
 gi|218243623|gb|EED10151.1| AAA ATPase central domain protein [Thermus aquaticus Y51MC23]
          Length = 419

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 13/117 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++L GP G+GK+ LA++ ++ +     R S +   L  +     +    E   +L  ++ 
Sbjct: 41  MVLFGPPGTGKTTLAHLLAEGAGKPFLRLSAVEAGLKEVRQAVERARQ-EGGLVLFLDEI 99

Query: 125 QLFHIINSIHQYD-------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
              H  N   Q           L +   T      +  P L SRL+   +  +S  D
Sbjct: 100 ---HRFNKAQQDALLPHLESGLLTLIGATAENPAFLLTPALRSRLRLFPLRPLSQED 153


>gi|167042397|gb|ABZ07124.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine crenarchaeote HF4000_ANIW97P9]
          Length = 386

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 71/201 (35%), Gaps = 36/201 (17%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSW-PSWP--SRVVILVGPSGSGKSCLANIWSDKSRST 91
                  + L     E++ +L   W  +W   +R ++LVGP G GK+ LAN+ + +    
Sbjct: 4   SEKYRPKNFLDLIGNEESRKLFVEWFTNWKKGTRPILLVGPPGIGKTTLANLAAKQFGYD 63

Query: 92  RFSNIAKS--------------LDSILIDTRKPVLLEDIDLL------DFNDTQLFHIIN 131
             S  A                L +  +     + ++++D +         +     II 
Sbjct: 64  LISLNASDVRNKKNIHEILSPVLGNQTVLGTPMIFIDEVDGIHGRADYGGTEA----IIK 119

Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
            + +    +++ A T           + S  K    +++       L   + ++     +
Sbjct: 120 ILKEPTVPIVLAANTDSSDK------MKSIKKVVKTIELKPLSPKLLRLCLNRILQLEGV 173

Query: 192 FIDKKLAAYIVQ--RME-RSL 209
            ID    A +V   R + RS+
Sbjct: 174 KIDSDSIAKLVTKSRGDIRSM 194


>gi|170744408|ref|YP_001773063.1| recombination factor protein RarA [Methylobacterium sp. 4-46]
 gi|168198682|gb|ACA20629.1| AAA ATPase central domain protein [Methylobacterium sp. 4-46]
          Length = 437

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 20/180 (11%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
            L           +IL GP G+GK+ +A + + ++ +  F  I+     +  + RK    
Sbjct: 42  ALTRLLRGGSLGSLILWGPPGTGKTTVARLLARET-ALHFEQISAIFSGVA-ELRKVFEA 99

Query: 114 EDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR 161
                     T LF    H  N           +  +  L+ A T   S+ +    L SR
Sbjct: 100 ARARRAAGQGTLLFVDEIHRFNRAQLDAFLPVTEDGTVTLVGATTENPSFELNAA-LLSR 158

Query: 162 LKAATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
              A V+     D+  + K++ +      R + +D +  A +++  +     A  L +++
Sbjct: 159 ---ARVLVFRALDEAAIGKLLDRAEAAEGRPLPLDPEARAVLLRMADGDGRAALTLAEEI 215


>gi|159491457|ref|XP_001703682.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158269257|gb|EDO95811.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 161

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           WP R ++L GP G GK+ L    + ++ +      A  +    
Sbjct: 5   WP-RGLLLHGPPGCGKTLLVQAVAAEAGAVLHVVTAARVTGAY 46


>gi|148381021|ref|YP_001255562.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934214|ref|YP_001385392.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937310|ref|YP_001388799.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           Hall]
 gi|166231483|sp|A7FY19|RUVB_CLOB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166231484|sp|A5I6F1|RUVB_CLOBH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148290505|emb|CAL84633.1| holliday junction DNA helicase [Clostridium botulinum A str. ATCC
           3502]
 gi|152930258|gb|ABS35758.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933224|gb|ABS38723.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str.
           Hall]
          Length = 342

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+  GP G GK+ LANI +++           +++           L D D+L  ++   
Sbjct: 55  VLFYGPPGLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 113 -HRLNRSIEE 121


>gi|124485994|ref|YP_001030610.1| proteasome-activating nucleotidase [Methanocorpusculum labreanum Z]
 gi|124363535|gb|ABN07343.1| 26S proteasome subunit P45 family [Methanocorpusculum labreanum Z]
          Length = 422

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+LVGP G+GK+ LA   S ++ +     +   L    I     ++ E
Sbjct: 196 PPKGVLLVGPPGTGKTLLAKAVSHETNAAFIRVVGSELVQKYIGEGARLVRE 247


>gi|326921318|ref|XP_003206908.1| PREDICTED: 26S protease regulatory subunit 10B-like [Meleagris
           gallopavo]
          Length = 372

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 149 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 200

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 201 ------MFNYARDHQ 209


>gi|322807371|emb|CBZ04945.1| holliday junction DNA helicase RuvB [Clostridium botulinum H04402
           065]
          Length = 342

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+  GP G GK+ LANI +++           +++           L D D+L  ++   
Sbjct: 55  VLFYGPPGLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 113 -HRLNRSIEE 121


>gi|312898444|ref|ZP_07757834.1| protein RecA [Megasphaera micronuciformis F0359]
 gi|310620363|gb|EFQ03933.1| protein RecA [Megasphaera micronuciformis F0359]
          Length = 347

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKS 99
           +L V S+   AV L      +P  RV+ + GP  SGK+ LA +  +   ++   +    +
Sbjct: 35  NLEVISSGSLAVDLAVGVGGYPRGRVIEIYGPESSGKTTLALHAIASAQKAGGIAAFIDA 94

Query: 100 LDSILIDTRKPVLLEDIDLL----DFNDTQL 126
             ++     + + ++  DLL    D  +  L
Sbjct: 95  EHALDPVYARHLGVDTADLLISQPDNGEQAL 125


>gi|153939305|ref|YP_001392348.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str.
           Langeland]
 gi|168179564|ref|ZP_02614228.1| holliday junction DNA helicase RuvB [Clostridium botulinum NCTC
           2916]
 gi|168181760|ref|ZP_02616424.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Bf]
 gi|170754942|ref|YP_001782705.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B1 str.
           Okra]
 gi|226950499|ref|YP_002805590.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796526|ref|YP_002864078.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Ba4 str.
           657]
 gi|166231485|sp|A7GHT8|RUVB_CLOBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229564226|sp|B1IMF3|RUVB_CLOBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|254767420|sp|C1FKG1|RUVB_CLOBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|259495661|sp|C3KTD2|RUVB_CLOB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|152935201|gb|ABS40699.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str.
           Langeland]
 gi|169120154|gb|ACA43990.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B1 str.
           Okra]
 gi|182669708|gb|EDT81684.1| holliday junction DNA helicase RuvB [Clostridium botulinum NCTC
           2916]
 gi|182675108|gb|EDT87069.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Bf]
 gi|226841138|gb|ACO83804.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A2 str.
           Kyoto]
 gi|229264087|gb|ACQ55120.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Ba4 str.
           657]
 gi|295320340|gb|ADG00718.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str.
           230613]
          Length = 342

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+  GP G GK+ LANI +++           +++           L D D+L  ++   
Sbjct: 55  VLFYGPPGLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 113 -HRLNRSIEE 121


>gi|146412856|ref|XP_001482399.1| hypothetical protein PGUG_05419 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 432

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 161 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 198


>gi|148270159|ref|YP_001244619.1| Holliday junction DNA helicase RuvB [Thermotoga petrophila RKU-1]
 gi|170288886|ref|YP_001739124.1| Holliday junction DNA helicase RuvB [Thermotoga sp. RQ2]
 gi|281412499|ref|YP_003346578.1| Holliday junction DNA helicase RuvB [Thermotoga naphthophila
           RKU-10]
 gi|166231566|sp|A5ILH0|RUVB_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238688750|sp|B1LAU3|RUVB_THESQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|147735703|gb|ABQ47043.1| Holliday junction DNA helicase subunit RuvB [Thermotoga petrophila
           RKU-1]
 gi|170176389|gb|ACB09441.1| Holliday junction DNA helicase RuvB [Thermotoga sp. RQ2]
 gi|281373602|gb|ADA67164.1| Holliday junction DNA helicase RuvB [Thermotoga naphthophila
           RKU-10]
          Length = 334

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I + + ++         L            LE  D+L  ++   
Sbjct: 54  VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111

Query: 127 FHIINSIHQYDSSLLMTA 144
            H +N   +    LL +A
Sbjct: 112 -HRLNKAVEE---LLYSA 125


>gi|52549234|gb|AAU83083.1| ATP-dependent 26S proteasome regulatory subunit [uncultured
           archaeon GZfos26E7]
          Length = 409

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   + ++ +T    +   L    I     ++ +  ++ 
Sbjct: 185 PPKGVLLFGPPGTGKTLLAKAVATRTDATFIRVVGSELVQKYIGEGARMVRDVFEMA 241


>gi|8569089|gb|AAF76434.1|AC015445_1 Contains similarity to p60 katanin from Chlamydomonas reinhardtii
           gb|AF205377 and contains an AAA domain PF|00004
           [Arabidopsis thaliana]
          Length = 627

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ LA   + ++ +   S    +L S
Sbjct: 372 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 411


>gi|51467888|ref|NP_001003832.1| 26S protease regulatory subunit S10B [Danio rerio]
 gi|49619121|gb|AAT68145.1| 26S protease regulatory subunit S10B [Danio rerio]
 gi|54035446|gb|AAH83283.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
           rerio]
 gi|55251213|emb|CAH69094.1| novel protein similar to X. tropicalis proteasome 26S ATPase
           subunit 6 [Danio rerio]
 gi|94734053|emb|CAK10966.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
           rerio]
 gi|156230928|gb|AAI52261.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
           rerio]
 gi|161611577|gb|AAI55770.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
           rerio]
 gi|182890938|gb|AAI65828.1| Psmc6 protein [Danio rerio]
          Length = 389

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|21673243|ref|NP_661308.1| ATP-dependent protease ATP-binding subunit [Chlorobium tepidum TLS]
 gi|46576607|sp|Q8KFC3|CLPX_CHLTE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21646329|gb|AAM71650.1| ATP-dependent Clp protease, ATP-binding subunit Clpx [Chlorobium
           tepidum TLS]
          Length = 439

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 29/139 (20%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVH-----SAIEQAV----RLIDSWPSWPSR---- 65
           DQ      Q     P  +  + D  ++       ++  AV    + +D+   W S     
Sbjct: 70  DQSPEPAFQPRLKSPVNIKEALDQYVIGQEQAKKSLAVAVYNHYKRLDA-HDWSSGDEVV 128

Query: 66  ----VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
                ++L+GP+G+GK+ LA   ++         +  ++      T    + +D++ +  
Sbjct: 129 IEKSNILLIGPTGTGKTLLAQTLAN------LLEVPFTIADATSLTEAGYVGDDVETIL- 181

Query: 122 NDTQLFHI--INSIHQYDS 138
              +L H    N       
Sbjct: 182 --ARLLHASDFNLERAERG 198


>gi|15825808|pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
          Length = 334

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I + + ++         L            LE  D+L  ++   
Sbjct: 54  VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111

Query: 127 FHIINSIHQYDSSLLMTA 144
            H +N   +    LL +A
Sbjct: 112 -HRLNKAVEE---LLYSA 125


>gi|87125673|ref|ZP_01081517.1| putative transposase [Synechococcus sp. RS9917]
 gi|86166649|gb|EAQ67912.1| putative transposase [Synechococcus sp. RS9917]
          Length = 251

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 22/111 (19%)

Query: 67  VILVGPSGSGKSCL--------------ANIWSDKSRSTRFSNIAKSLDSILI----DTR 108
           ++L GPSG GK+ L                 +   +          + D   I    D  
Sbjct: 98  LLLFGPSGVGKTHLAIAITMAMAAQDQACRFFPATALVQLLQKAKAAYDLPAILQKLDRY 157

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             ++++DI  +  ++ +   LF +I        SLL+T+      W    P
Sbjct: 158 SLLVIDDISYVRRSELETSVLFELICH-RYERRSLLVTSNQPFREWDDIFP 207


>gi|84497119|ref|ZP_00995941.1| hypothetical protein JNB_13033 [Janibacter sp. HTCC2649]
 gi|84382007|gb|EAP97889.1| hypothetical protein JNB_13033 [Janibacter sp. HTCC2649]
          Length = 426

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 7/116 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------NIAKSLDSILIDTRKPVLLEDI 116
             V+ L GP   GKS +   ++                +   S  +  ++   P+ L++ 
Sbjct: 24  EPVIALHGPRSVGKSTILTTFAQAHGVPVIDLDDPATRDAVVSNAASAVNEHTPLCLDEY 83

Query: 117 DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
                    L   +N       + ++T  T   +       L  RL A T+  +S 
Sbjct: 84  QHAPVVLDALKARLNREGAQPGTAVLTGSTRQDALPRTAQALTGRLHAMTIWPLSQ 139


>gi|308162055|gb|EFO64482.1| 26S proteasome ATPase subunit S4, putative [Giardia lamblia P15]
          Length = 447

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS-----------TRFSNIAKSLDSILIDTRKP- 110
           P R  IL GPSG+GKS LA   ++++ +            ++S     L   L    K  
Sbjct: 226 PPRSCILHGPSGTGKSLLARACANETSACYMKMAGSELIQKYSGEGPRLVRELFKAAKAN 285

Query: 111 ----VLLEDIDLLDFN------------DTQLFHIINSI----HQYDSSLLMT------- 143
               + ++++D +                  +  ++N +          ++M        
Sbjct: 286 QPTIIFIDEVDAVGRKRYDADSGGAREIQRTMLELLNQLDGFDRTEGVKVIMATNLIESL 345

Query: 144 ------ARTFPVSWGVCLPDLCSR 161
                 A        V LPDL +R
Sbjct: 346 DSALIRAGRIDRKIYVGLPDLTAR 369


>gi|290959480|ref|YP_003490662.1| ATP-binding protein [Streptomyces scabiei 87.22]
 gi|260649006|emb|CBG72120.1| putative ATP-binding protein [Streptomyces scabiei 87.22]
          Length = 478

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 26/116 (22%)

Query: 63  PSRVVILVGPSGSGKSCLA------------NI-------WSDK-SRSTRFSNIAKSLDS 102
             R V+ VG  G+GK+ LA             +       W+ + + +     +A+ L +
Sbjct: 332 AGRNVVFVGAPGTGKTHLAIGLGVRACQAGHRVLFATATEWAARLAGARAEGRLAEELTA 391

Query: 103 ILIDTRKPVLLEDIDLLDFN-DTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
             +D    ++++++  L F+ DT   +F +I +     +SL++T+      W   L
Sbjct: 392 --LDACPLLIVDEVGYLPFDTDTARLVFQLI-AHRYERASLVVTSDRPLGRWDEIL 444


>gi|242082794|ref|XP_002441822.1| hypothetical protein SORBIDRAFT_08g002900 [Sorghum bicolor]
 gi|241942515|gb|EES15660.1| hypothetical protein SORBIDRAFT_08g002900 [Sorghum bicolor]
          Length = 927

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSILIDTRKPVLLEDID 117
           PSR+ +L+GP G GK+ L    + K  +T      +        S  +  +    ++  D
Sbjct: 24  PSRLTLLLGPPGCGKTTLLKALAGKLNATGLKVTGEVEYNGVELSSFVPEKTAAYIDQYD 83

Query: 118 LL 119
           L 
Sbjct: 84  LH 85


>gi|257792056|ref|YP_003182662.1| ABC transporter-like protein [Eggerthella lenta DSM 2243]
 gi|257475953|gb|ACV56273.1| ABC transporter related [Eggerthella lenta DSM 2243]
          Length = 608

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 63  PSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           P +V  LVGPSGSGKS LA +    W   + + R   +     S          +E  D 
Sbjct: 391 PGQVTALVGPSGSGKSTLARLIAGFWDADAGTVRLGGVPVGELSAEQLAGCISYVEQ-DN 449

Query: 119 LDFNDT 124
             F+DT
Sbjct: 450 YLFDDT 455


>gi|224113469|ref|XP_002316504.1| predicted protein [Populus trichocarpa]
 gi|222865544|gb|EEF02675.1| predicted protein [Populus trichocarpa]
          Length = 431

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P R  +L GP G+GKS LA   + ++ ST FS  +  L S                    
Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDS 223

Query: 107 TRKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTA--------- 144
               + +++ID L                 T+L   +  +   D  +L+ A         
Sbjct: 224 APSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGSDDHKVLVLAATNTPYALD 283

Query: 145 ----RTFPVSWGVCLPDLCSR 161
               R F     + LPDL +R
Sbjct: 284 QAIRRRFDKRIYIPLPDLKAR 304


>gi|154288250|ref|XP_001544920.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus NAm1]
 gi|150408561|gb|EDN04102.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus NAm1]
          Length = 712

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 488 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 533



 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  + E  D  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKAIREHFDEA 266


>gi|145524307|ref|XP_001447981.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415514|emb|CAK80584.1| unnamed protein product [Paramecium tetraurelia]
          Length = 541

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 43/162 (26%)

Query: 55  LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------- 99
           +++ W     + V+L GP G+GK+ LA   + + R+T F+  A S               
Sbjct: 238 ILEPW-----KGVLLFGPPGTGKTMLAKAVATECRTTFFNVQASSVVSKWRGESEKLIRV 292

Query: 100 -LDSILIDTRKPVLLEDIDLL------DFNDTQ---------LFHIINSIHQYDSSLLMT 143
             D         + ++++D +        N+ +         L  +   +       L+ 
Sbjct: 293 LFDLARHYEPSTIFIDEMDSIMGQRGSAGNEHEGGRRMKTELLIQLDGLLKSKKRVFLLA 352

Query: 144 ARTFPVSWGVC-LPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           A   P    +  L  L  R      + I LPD +  E +I +
Sbjct: 353 ASNLPWDLDIAMLRRLEKR------IYIPLPDQESRESMIRR 388


>gi|123487149|ref|XP_001324882.1| proteasome [Trichomonas vaginalis G3]
 gi|121907772|gb|EAY12659.1| proteasome, putative [Trichomonas vaginalis G3]
          Length = 468

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   +  + +T    +   L    +     ++ E
Sbjct: 246 PPKGVILFGPPGTGKTLLARAVAKSTSATFLRVVGSELIQKYLGEGPKLVRE 297


>gi|121707934|ref|XP_001271981.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119400129|gb|EAW10555.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 539

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 71/198 (35%), Gaps = 30/198 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111
             +IL G +G+GK+ +A + +    S                   A++   + +  RK +
Sbjct: 156 PSMILWGHAGTGKTTIARVIASMVGSRFVEINSTSSGVAECKKIFAEARSELNLTGRKTI 215

Query: 112 LL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +  ++I     +   +F       +     L+ A T   S+ V    L SR        +
Sbjct: 216 IFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQNA-LLSR---CRTFTL 268

Query: 171 SLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRME---RSLVFAEKLVDKMDN 221
           S   D  +E ++ +              +D +L +Y+ +  +   R+ +   +L   +  
Sbjct: 269 SKLTDRDVESILHRALRVEGPNYSPSALVDDELISYLARFADGDARTSLNLLELAMDLSK 328

Query: 222 LALSRGMGITRSLAAEVL 239
            +      + RSL   ++
Sbjct: 329 RSEMTKDELKRSLTKTLV 346


>gi|17531535|ref|NP_496273.1| Cell Division Cycle related family member (cdc-48.1)
           [Caenorhabditis elegans]
 gi|1729896|sp|P54811|TERA1_CAEEL RecName: Full=Transitional endoplasmic reticulum ATPase homolog 1;
           AltName: Full=Cell division cycle-related protein 48.1;
           AltName: Full=p97/CDC48 homolog 1
 gi|3874005|emb|CAA90050.1| C. elegans protein C06A1.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 809

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 516 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 572



 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ S  F                SN+ K+ +    +
Sbjct: 243 PPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKN 302

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 303 QPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGA 362

Query: 155 L 155
           L
Sbjct: 363 L 363


>gi|326470013|gb|EGD94022.1| ribosome biogenesis ATPase RIX7 [Trichophyton tonsurans CBS 112818]
          Length = 743

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++SR+   S
Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546



 Score = 36.7 bits (84), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L +  +  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 266


>gi|308509910|ref|XP_003117138.1| CRE-CDC-48.1 protein [Caenorhabditis remanei]
 gi|308242052|gb|EFO86004.1| CRE-CDC-48.1 protein [Caenorhabditis remanei]
          Length = 809

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 516 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 572



 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ S  F                SN+ K+ +    +
Sbjct: 243 PPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKN 302

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 303 QPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGA 362

Query: 155 L 155
           L
Sbjct: 363 L 363


>gi|302805412|ref|XP_002984457.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii]
 gi|300147845|gb|EFJ14507.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii]
          Length = 494

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
             + S +  A         +P  V+ L+GP G+GK+ LA   + ++    F+  A     
Sbjct: 229 FQIVSCLRGASNFRSLGAKFPKGVL-LIGPPGTGKTLLARALAGEAGVPFFAASASEFVE 287

Query: 103 ILIDTRKPVLLE 114
           + +      + E
Sbjct: 288 MFVGRGAARIRE 299


>gi|91773629|ref|YP_566321.1| AAA family ATPase, CDC48 subfamily protein [Methanococcoides
           burtonii DSM 6242]
 gi|91712644|gb|ABE52571.1| CDC48, AAA family ATPase [Methanococcoides burtonii DSM 6242]
          Length = 736

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R ++L GP G+GK+ LA   +++S +   S     L S  +   +  + E
Sbjct: 481 PPRGILLFGPPGTGKTLLAKAVANESEANFISIKGPELLSKYVGESEKAVRE 532



 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 59/166 (35%), Gaps = 39/166 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ +A   + +S +         +                +    +
Sbjct: 209 PPKGVLLYGPPGTGKTMIAKAVASESEANFIPISGPEIISKYYGESEQKLREIFEEAEKE 268

Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +    +D           QL  +++ +      +++ A   P S    
Sbjct: 269 GPTIIFIDELDSIAPKRDDVVGEVERRVVAQLLTLMDGLTSRGKVIVIAATNRPNSIDQA 328

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L       +       ++I +PD     +V+      R + I++ L
Sbjct: 329 LR------RGGRFDREIEIGIPDRGGRLQVL--YVHTRGMPIEQGL 366


>gi|55980375|ref|YP_143672.1| Holliday junction DNA helicase RuvB [Thermus thermophilus HB8]
 gi|62287409|sp|Q5SL87|RUVB_THET8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|20330535|dbj|BAA76480.2| RuvB [Thermus thermophilus]
 gi|55771788|dbj|BAD70229.1| RuvB, Holliday junciton DNA helicase [Thermus thermophilus HB8]
          Length = 324

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113
           P   ++L GP G GK+ LA++ + +           +        ++ +  ++    + +
Sbjct: 37  PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 96

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157
           ++I  L     +  H+  ++  +   +++       +  + LP                 
Sbjct: 97  DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      ++   P++  L + +++      + I ++ A  I +R   ++  A++L  
Sbjct: 155 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212

Query: 218 KMDNLALSRGMGI 230
           ++ + A   G  +
Sbjct: 213 RVRDFAQVAGEEV 225


>gi|326482765|gb|EGE06775.1| ribosome biogenesis ATPase RIX7 [Trichophyton equinum CBS 127.97]
          Length = 743

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++SR+   S
Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546



 Score = 36.7 bits (84), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L +  +  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 266


>gi|323691840|ref|ZP_08106096.1| AAA ATPase central domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323504122|gb|EGB19928.1| AAA ATPase central domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 444

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDT 124
           +I  GP G GK+ LA I + K+RS+     A +     I T    ++E  +        T
Sbjct: 54  MIFWGPPGVGKTTLARIIAGKTRSSFIDFSAVTSGIKEIKT----VMEQAEKNRSMGIRT 109

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 110 ILFVDEIHRFNKAQQD 125


>gi|323484771|ref|ZP_08090128.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum
           WAL-14163]
 gi|323401877|gb|EGA94218.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum
           WAL-14163]
          Length = 444

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDT 124
           +I  GP G GK+ LA I + K+RS+     A +     I T    ++E  +        T
Sbjct: 54  MIFWGPPGVGKTTLARIIAGKTRSSFIDFSAVTSGIKEIKT----VMEQAEKNRSMGIRT 109

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 110 ILFVDEIHRFNKAQQD 125


>gi|304397061|ref|ZP_07378940.1| AAA ATPase central domain protein [Pantoea sp. aB]
 gi|304355210|gb|EFM19578.1| AAA ATPase central domain protein [Pantoea sp. aB]
          Length = 447

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I +    +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERA----RQNKHAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRM---------ERSLVFAEKLVDKM 219
                + +E+V+ +   D  R       +     +RM          R+L   E + D  
Sbjct: 163 KSLTLEDIEQVLDQAMQDKARGYGESDIVLPDNTRRMIAELVNGDARRALNTLEMMADMA 222

Query: 220 DNLALSRGMGITRSLAAEV 238
           +  A S    +T  L  EV
Sbjct: 223 ETTA-SGQRELTPQLLNEV 240


>gi|198452025|ref|XP_001358593.2| GA21817 [Drosophila pseudoobscura pseudoobscura]
 gi|198131754|gb|EAL27734.2| GA21817 [Drosophila pseudoobscura pseudoobscura]
          Length = 386

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G GK+ LA   +  + +   S +        +     ++ +
Sbjct: 166 PPRGVLLYGPPGCGKTMLAKAVAHHTTANFISVVGSEFVQKYLGEGPRMVRD 217


>gi|182680533|ref|YP_001834679.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636416|gb|ACB97190.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 640

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 39/197 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    F+        + +                   
Sbjct: 190 RGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 249

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +            D  +  L  +   ++     +  +L+ A   P     
Sbjct: 250 CIIFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 309

Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L  L   R     VV    PD    E+++      R++ +   +    V R       A
Sbjct: 310 AL--LRPGRFDRQIVV--PNPDVVGRERILKVHI--RKVPLSPDVDLKTVARGTPGFSGA 363

Query: 213 EKLVDKMDNLALSRGMG 229
             L++ ++  AL     
Sbjct: 364 -DLMNLVNEAALMAARR 379


>gi|162147365|ref|YP_001601826.1| transposase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785942|emb|CAP55522.1| putative transposase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 281

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 44/174 (25%)

Query: 29  FFSFPRCLGISRDDLLVHSAIE-QAVRLIDSWPSWPSRVVILV--GPSGSGKSCLA---N 82
            F F     + R            A+  ++    +  R  ++   GP G+GKS LA    
Sbjct: 75  SFDFSFQPSLER--------NRIMAIAQLE----FIGRAEVVHFLGPPGTGKSHLATAIG 122

Query: 83  IWSDKSR--------STRFSNIAKSLDSILID------TRKPVLLED----IDLLDFNDT 124
           + + K+         +     +A++     +        R  +L+ D    + +      
Sbjct: 123 VAAVKAGRSVYRCTLAELIEALARAEREGRLAEKIRFYARAALLIVDEIGYLPITSGGAN 182

Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------LCSRLK-AATVVKIS 171
             F ++N       S+++T+      WG    D      L  RL   A VV+I 
Sbjct: 183 LFFQLVN-ARYEKGSMILTSNRGFAEWGDVFGDPVVATALLDRLLHHAIVVQIE 235


>gi|154505068|ref|ZP_02041806.1| hypothetical protein RUMGNA_02578 [Ruminococcus gnavus ATCC 29149]
 gi|153794547|gb|EDN76967.1| hypothetical protein RUMGNA_02578 [Ruminococcus gnavus ATCC 29149]
          Length = 629

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 44/139 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 212 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGAAKVRDLFQQANEKAPCI 271

Query: 111 VLLEDIDL--------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID         +  ND       QL   ++        +++ A   P S      
Sbjct: 272 VFIDEIDAIGKKRNGNIGGNDEREQTLNQLLTEMDGFDGTKGVVILAATNQPDSLDPALL 331

Query: 152 ---------GVCLPDLCSR 161
                     V LPDL  R
Sbjct: 332 RPGRFDRRIPVELPDLKGR 350


>gi|148700414|gb|EDL32361.1| Werner helicase interacting protein 1, isoform CRA_d [Mus musculus]
          Length = 339

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311

Query: 125 QLF 127
             F
Sbjct: 312 SFF 314


>gi|121702141|ref|XP_001269335.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus clavatus NRRL 1]
 gi|119397478|gb|EAW07909.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus clavatus NRRL 1]
          Length = 738

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 515 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 560



 Score = 37.4 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +         A S+ S +    +  L E  +  
Sbjct: 205 PPRGVLLHGPPGCGKTMIANAFAAELGIPFIPISAPSIVSGMSGESEKALREHFEEA 261


>gi|268537162|ref|XP_002633717.1| Hypothetical protein CBG03401 [Caenorhabditis briggsae]
 gi|187036624|emb|CAP24301.1| hypothetical protein CBG_03401 [Caenorhabditis briggsae AF16]
          Length = 341

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G GK+ LA   +  +     +
Sbjct: 115 PPRGILLYGPPGCGKTLLAKAVARAAGCRFIN 146


>gi|2498879|sp|Q56214|RUVB_THETH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|7144503|gb|AAB03726.2| RuvB Protein [Thermus thermophilus]
          Length = 324

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113
           P   ++L GP G GK+ LA++ + +           +        ++ +  ++    + +
Sbjct: 37  PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 96

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157
           ++I  L     +  H+  ++  +   +++       +  + LP                 
Sbjct: 97  DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFALIGATTRPGLITAP 154

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      ++   P++  L + +++      + I ++ A  I +R   ++  A++L  
Sbjct: 155 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212

Query: 218 KMDNLALSRGMGI 230
           ++ + A   G  +
Sbjct: 213 RVRDFAQVEGEEV 225


>gi|89095117|ref|ZP_01168043.1| hypothetical protein MED92_17485 [Oceanospirillum sp. MED92]
 gi|89080612|gb|EAR59858.1| hypothetical protein MED92_17485 [Oceanospirillum sp. MED92]
          Length = 507

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 53  VRLIDSWPSWPSRVVIL-VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           +RL D +   P   + L  G SGSGKS L+    D++ + R  +  +        + K  
Sbjct: 314 LRLTDYYARRPKPALFLMHGVSGSGKSHLSQQLVDQTDTIRIRSDVERKRLFRELSLKG- 372

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
             E IDL         H  N +H   + LL
Sbjct: 373 --EKIDLYGPQMNA--HTFNLLHDTSADLL 398


>gi|85702838|ref|ZP_01033942.1| Rhodanese-like protein [Roseovarius sp. 217]
 gi|85671766|gb|EAQ26623.1| Rhodanese-like protein [Roseovarius sp. 217]
          Length = 389

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            ++P+ + ++ G +G+GK+ L +  + +  +       + L +       PV        
Sbjct: 182 EAFPAPITLIDGGTGTGKTHLLSHLAAQ-GAQVID--LEHLAAHRGSVFGPVAGGQPSQK 238

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFL 178
            F ++ L   +       + L+           + LP  L S ++ A V+++ +P    L
Sbjct: 239 SF-ESALAAQM--ARLDPTRLVYIEAESTRIGRINLPPMLTSAMRVAPVIRLEVP----L 291

Query: 179 EKVIVKMFADR-QIFIDKKLAAYIVQRM 205
              +  + AD   +  D      I+ R+
Sbjct: 292 AARVSHLCADYTDLIADPDRLDAILTRL 319


>gi|116620545|ref|YP_822701.1| general secretion pathway protein-like protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223707|gb|ABJ82416.1| general secretion pathway protein-related protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 297

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 29/204 (14%)

Query: 27  QLFFSFPRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           Q  F+           L      E+A+  LI    S     + L G  G+GK+ +     
Sbjct: 10  QNPFNMSPDPSF----LFRSPQHEEALASLIYGVQS-RKGFIALTGEVGTGKTTMLECLR 64

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDS---- 138
           D   + + +  +     + ++    +L  D+DL          L  + N + +       
Sbjct: 65  DFLNAQQIAFASLFNSRLTVEQFFELLAYDLDLRCNRLSKTEVLLSLNNMLLERAGAGRT 124

Query: 139 SLLMTARTFPVSWGV-----CLPDLCSRLKAATVV----------KISLPDDDFLEKVIV 183
           ++L+      + W V      L +L +R      +          K+  P+   L++ I 
Sbjct: 125 TVLIVDEAHNLEWDVLEEIRLLGNLENRRGKLLQIILSGQQELDRKLEAPEFRQLKQRIA 184

Query: 184 KMFADRQIFIDKKLAAYIVQRMER 207
              + R     ++  AY+  RM R
Sbjct: 185 LRCSLRGFS-PEETFAYVNSRMSR 207


>gi|118474580|ref|YP_891667.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp.
           fetus 82-40]
 gi|166231477|sp|A0RN84|RUVB_CAMFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|28974219|gb|AAO64220.1| putative Holliday junction DNA helicase [Campylobacter fetus]
 gi|118413806|gb|ABK82226.1| holliday junction DNA helicase RuvB [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 343

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+  GP G GK+ LA+I +++  +    + A  ++           LE+ D+L  ++ 
Sbjct: 55  VLFYGPPGLGKTTLAHIIANEMGANIKISSAPMIEKSGDLAAILTNLEEGDVLFIDEI 112


>gi|306821135|ref|ZP_07454751.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304550828|gb|EFM38803.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 334

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L++I +++  S        +++           L++ D+L  ++   
Sbjct: 59  VLLYGPPGLGKTTLSHIIANEMNSNIKITSGPAIERAGDLAALLTNLQEGDVLFIDEI-- 116

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 117 -HRVNRSVEE 125


>gi|304436497|ref|ZP_07396471.1| crossover junction ATP-dependent DNA helicase RuvB [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370543|gb|EFM24194.1| crossover junction ATP-dependent DNA helicase RuvB [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 345

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 72/183 (39%), Gaps = 15/183 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-Q 125
           V+L GP G GK+ LA I +++  +      A +++           L++ D+L  ++  +
Sbjct: 60  VLLCGPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQEHDVLFIDEIHR 119

Query: 126 LFH-----IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
           L H     + +++  +   +++     P +  + L DL          K        L  
Sbjct: 120 LSHHVEEILYSAMEDHAIDIII--GKGPSARSIRL-DLAPFTLVGATTKTGS-----LSA 171

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            +   F   Q  ++      ++  +ER+       +++   L ++R    T  +A  +LK
Sbjct: 172 PLRDRFGI-QARLEYYTTDALLLIIERTAEILSVHIERDGALEIARRSRGTPRVANRILK 230

Query: 241 ETQ 243
             +
Sbjct: 231 RVR 233


>gi|289540940|gb|ADD09611.1| 26S proteasome AAA-ATPase subunit RPT4a [Trifolium repens]
          Length = 439

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + V+L GP G+GK+ LA   +    +     +  SL S+L      ++
Sbjct: 174 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVFCSLCSVLQVVSSAII 223


>gi|282163672|ref|YP_003356057.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE]
 gi|282155986|dbj|BAI61074.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE]
          Length = 412

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +  ++++    I   L    I     ++ E
Sbjct: 187 PPKGVLLYGPPGTGKTLLAKAVAHSTKASFIRIIGSELVQKYIGEGARMVRE 238


>gi|302877500|ref|YP_003846064.1| MgsA AAA+ ATPase-like [Gallionella capsiferriformans ES-2]
 gi|302580289|gb|ADL54300.1| MgsA AAA+ ATPase-like [Gallionella capsiferriformans ES-2]
          Length = 439

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 21/179 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +    +  F  ++  L  +          + +   +   T L
Sbjct: 51  MILWGPPGVGKTTLARLMASAFDAE-FMPLSAVLSGVKDIREAIAQAQRVLQQNGRHTIL 109

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V    L SR   A V  +   
Sbjct: 110 FVDEVHRFNKSQQ-DAFLPFVEQGLVTFIGATTENPSFEVNNA-LLSR---AQVYVLHAL 164

Query: 174 DDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            ++ L ++  +    A   +         ++   +        +++++   A + G  +
Sbjct: 165 SEEELGQLFERAQAVAMPGLSFADDAHERVIGYADGDARRLLNVLEQLQTAAETAGKTL 223


>gi|237807705|ref|YP_002892145.1| AAA ATPase [Tolumonas auensis DSM 9187]
 gi|237499966|gb|ACQ92559.1| AAA ATPase [Tolumonas auensis DSM 9187]
          Length = 275

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 29/151 (19%)

Query: 36  LGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWS-----DK 87
             +   D ++  AI+ A   I  +  W       +++ G  GSGKS LA   +      +
Sbjct: 95  ERMDHSDPILEHAIQTAHSFISGFEHWEQHGGSCILIYGDYGSGKSTLAGAIAHELINQR 154

Query: 88  SRSTRFSNIAKSLDSILIDTRK--------PVLLEDIDLLDFNDTQ-------------L 126
            +S  F   A  +D +     +           LE++DLL  ++               L
Sbjct: 155 QKSVIFQQWASIIDRLFFAVIEDQEERNRYRRALEEVDLLIIDEIGANKTRMVESQSSFL 214

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            H++        S+++     P S    + D
Sbjct: 215 GHLLRRRRNLSKSVILITNHNPASLHQAVGD 245


>gi|254420221|ref|ZP_05033945.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
 gi|254420480|ref|ZP_05034204.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
 gi|254420625|ref|ZP_05034349.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
 gi|196186398|gb|EDX81374.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
 gi|196186657|gb|EDX81633.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
 gi|196186802|gb|EDX81778.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
          Length = 242

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 22/114 (19%)

Query: 65  RVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLD-------SILIDTRKPVL--LE 114
           R ++LVG +G+GK+ LA  I ++  R+        ++D          +     +   L 
Sbjct: 99  RNIVLVGGTGTGKTHLATAIIANVVRAGARGRYFNTVDLVNRLEEETRLGKAGALAAHLC 158

Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +D++  ++             LFH+I+ +++  +S+++T       W     D
Sbjct: 159 RLDVVVLDELGYLPFARSGGQLLFHLISKLYER-TSVIVTTNLAFGEWPTVFGD 211


>gi|115389314|ref|XP_001212162.1| 26S protease regulatory subunit 6A-B [Aspergillus terreus NIH2624]
 gi|114194558|gb|EAU36258.1| 26S protease regulatory subunit 6A-B [Aspergillus terreus NIH2624]
          Length = 461

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 247 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 306

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 307 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 364

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++    ++      R++ ++  +
Sbjct: 365 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVEDTV 400


>gi|169622581|ref|XP_001804699.1| hypothetical protein SNOG_14515 [Phaeosphaeria nodorum SN15]
 gi|111056935|gb|EAT78055.1| hypothetical protein SNOG_14515 [Phaeosphaeria nodorum SN15]
          Length = 825

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+R ++L GP G+GK+ LA   + +S+ST F+  A SL S  +   + ++          
Sbjct: 569 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTSKFLGESEKLV---------- 618

Query: 123 DTQLFHI 129
              LF +
Sbjct: 619 -RALFQL 624


>gi|94495102|ref|ZP_01301683.1| transposase [Sphingomonas sp. SKA58]
 gi|94425368|gb|EAT10388.1| transposase [Sphingomonas sp. SKA58]
          Length = 269

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 35/164 (21%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----- 83
            F F    GI +  LL   ++      I+S        ++L G SG+GK+          
Sbjct: 79  TFDFDAAPGIRKPHLL---SLAAGDDWIES-----GGNLLLFGQSGTGKTHAVAAIGHAL 130

Query: 84  --------WSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFND---TQLF 127
                   +   +   +    A+   S+      +D    ++L+D+  +  +    + LF
Sbjct: 131 IDTGRRVLFCSTTDMVQKLQSARRDLSLPAMLDKLDKFDLIVLDDLSYVRKDQVETSALF 190

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            +I +      SL +TA     +W    PD      A TV  I 
Sbjct: 191 ELI-AHRYERHSLAITANQPFSAWDNVFPD-----PAMTVAAID 228


>gi|332158285|ref|YP_004423564.1| replication factor C large subunit [Pyrococcus sp. NA2]
 gi|331033748|gb|AEC51560.1| replication factor C large subunit [Pyrococcus sp. NA2]
          Length = 479

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 27/185 (14%)

Query: 47  SAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94
            AIE+    I++W          ++L GP GSGK+      +++                
Sbjct: 23  DAIEKVRAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYALANEYNFEVIELNASDERTY 82

Query: 95  ------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFP 148
                   A     IL   RK + L++ D ++ +      I   I +  + ++M A    
Sbjct: 83  NKIARYVQAAYTMDILGKRRKIIFLDEADNIEPSGAA--EIAKLIDKARNPIIMAAN--- 137

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
             W V   ++  R   A +V+        +   ++++     I + K++   I +R    
Sbjct: 138 HYWEV-PKEIRDR---AELVEYKRLTQRDVMSALIRILRREGITVPKEILTEIAKRASGD 193

Query: 209 LVFAE 213
           L  A 
Sbjct: 194 LRAAI 198


>gi|328852964|gb|EGG02106.1| ATP-dependent peptidase [Melampsora larici-populina 98AG31]
          Length = 814

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 35/162 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------- 109
           R V+L GP G+GK+ LA   + ++    F       D + +                   
Sbjct: 413 RGVLLTGPPGTGKTLLARAVAGEAGVQFFIASGSEFDEMYVGVGARRIRELFAAARKAAP 472

Query: 110 -PVLLEDIDLLDF-----NDTQLFHIINS-------IHQYDSSLLMTARTFPVSWGVCLP 156
             + ++++D L       +   +   +N          Q +  +LM A  FP S    L 
Sbjct: 473 AIIFIDELDALGAKRSSKDQHYIKQTLNQLLVELDGFQQTEGVILMAATNFPQSLDKAL- 531

Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              +R  +    V + LPD     +++      R + ++  L
Sbjct: 532 ---TRPGRFDRHVAVPLPDARGRVQILKHHA--RNVTVNSDL 568


>gi|326500946|dbj|BAJ95139.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326507238|dbj|BAJ95696.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 394

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 119 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 150


>gi|323139016|ref|ZP_08074076.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
 gi|322395770|gb|EFX98311.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
          Length = 254

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+LVGP G+GK+ LA   + ++    FS        + +      + +  +       
Sbjct: 191 RGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFEQAKRTRP 250

Query: 125 QL 126
            L
Sbjct: 251 AL 252


>gi|312132192|ref|YP_003999532.1| aaa atpase central domain protein [Leadbetterella byssophila DSM
           17132]
 gi|311908738|gb|ADQ19179.1| AAA ATPase central domain protein [Leadbetterella byssophila DSM
           17132]
          Length = 422

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 20/146 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKP----VLLED 115
             +IL GP G GK+ LA + ++ S       +  S   K L  +L          + +++
Sbjct: 42  PSMILWGPPGVGKTSLAFLIAEVSKRQFHNLSAISAGVKDLREVLARPSGLFPPILFIDE 101

Query: 116 IDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           I   + +    L        +     L+ A T   S+ V    L SR     V  +    
Sbjct: 102 IHRFNKSQQDALL----GAVEKGKVTLIGATTENPSFEVNSA-LLSR---CQVYILEAFG 153

Query: 175 DDFLEKVIVKMFADRQI--FIDKKLA 198
            + L  ++ +  ++ ++   +  ++ 
Sbjct: 154 QEELRCLVDRALSEDELLKTLPIEVI 179


>gi|311031534|ref|ZP_07709624.1| recombination factor protein RarA [Bacillus sp. m3-13]
          Length = 423

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 61/171 (35%), Gaps = 31/171 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  ++              ++    +   +  +  ++L+++ 
Sbjct: 43  MILYGPPGIGKTSIATAIAGSTQYAFRTLNAVVHNKKDMEIVAEEAKMSGKVILILDEVH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+ N        +L+  T      +     P + SR     + ++   
Sbjct: 103 RLDKAKQDFLLPHLEN-----GRIVLIGATTSNPYHAIN---PAIRSR---CQIFELHPL 151

Query: 174 DDDFLEKVIVKM-------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
               ++ VI++        F D Q+ + ++   +        +  A   ++
Sbjct: 152 SVAEIKHVIMQALEDKERGFGDYQVDLAERAMEHFANGCGGDVRSALNALE 202


>gi|331242462|ref|XP_003333877.1| cell division cycle protein 48 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309312867|gb|EFP89458.1| cell division cycle protein 48 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 795

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R ++L GP G GK+ LAN  +++      +  + S+ S +    +  + +  +     
Sbjct: 174 PIRGLLLCGPPGCGKTMLANAIANQLGVRLINVSSTSIVSGMSGESEKAIRDIFEQATKQ 233

Query: 123 DTQLF 127
              L 
Sbjct: 234 APCLL 238



 Score = 36.3 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           V+L GP G GK+ +A   +++S++   S     L
Sbjct: 515 VLLWGPPGCGKTLVAKAVANESQANFISVKGPEL 548


>gi|303233293|ref|ZP_07319964.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4]
 gi|302480593|gb|EFL43682.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4]
          Length = 635

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 44/139 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + +++   F         + +                     
Sbjct: 217 ALLVGPPGTGKTLLARAVAGEAKVPFFQISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCI 276

Query: 111 VLLEDIDLLDF---------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           + ++++D +           ++      QL   ++    ++  +++ A   P +      
Sbjct: 277 IFIDELDTVGKKRGMSINSNDEREQTLNQLLAEMDGFDNHEGIVVLAATNRPETLDPALL 336

Query: 152 ---------GVCLPDLCSR 161
                     V LPDL  R
Sbjct: 337 RPGRFDRRIPVELPDLAGR 355


>gi|302307351|ref|NP_983987.2| ADL109Wp [Ashbya gossypii ATCC 10895]
 gi|299788959|gb|AAS51811.2| ADL109Wp [Ashbya gossypii ATCC 10895]
          Length = 738

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S ST FS  A +L S  +   + ++
Sbjct: 488 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASTLTSKYLGESEKLV 537


>gi|284006422|emb|CBA71658.1| ATP-dependent Clp protease ATP-binding subunit [Arsenophonus
           nasoniae]
          Length = 428

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 48/136 (35%), Gaps = 34/136 (25%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEVKEIAPHRERSALPT----------PHEIRHHLDDYVIGQENAKKVLAVAVYNH 95

Query: 56  IDSWPSWPS------------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
                +  +              ++L+GP+GSGK+ LA   +      R+ ++  ++   
Sbjct: 96  YKRLRNVSNEGVNGEGVELGKSNILLIGPTGSGKTLLAETLA------RYLDVPFTMADA 149

Query: 104 LIDTRKPVLLEDIDLL 119
              T    + ED++ +
Sbjct: 150 TTLTEAGYVGEDVENI 165


>gi|303311419|ref|XP_003065721.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105383|gb|EER23576.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320039584|gb|EFW21518.1| AAA family ATPase [Coccidioides posadasii str. Silveira]
          Length = 535

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 43/217 (19%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------N 95
                 LI++        +IL G +G+GK+ +A + +    S                  
Sbjct: 146 NGVLRGLIEADR---VPSMILWGGAGTGKTTIARVIATMVGSRFVEINSTSSGVAECKKI 202

Query: 96  IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            A++ + + +  RK ++  ++I     +   +F       +     L+ A T   S+ V 
Sbjct: 203 FAEARNELRLAGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 259

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERS 208
              L SR        +S   DD +  ++ +              +D++L  Y+    +  
Sbjct: 260 NA-LLSR---CRTFTLSKLTDDDIISILNRALELEGPNYSPTNLVDEELIRYLAAFAD-- 313

Query: 209 LVFAEKLVDKMDNLALSRGMG----------ITRSLA 235
              A   ++ ++                   +TR+L 
Sbjct: 314 -GDARTSLNLLELAMDLSKRPGMTKDELKKGLTRTLV 349


>gi|223937028|ref|ZP_03628936.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
 gi|223894309|gb|EEF60762.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
          Length = 567

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 28/117 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           V+L+GP G+GK+ LA   + ++ +  FS        + +                     
Sbjct: 188 VLLIGPPGTGKTMLAKAIAGEANANFFSVHGSDFTEVYVGVGAKRVRQLFKQAAKQQPSI 247

Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +  N               L   ++     +  +++ A   P      L
Sbjct: 248 IFIDEIDCVGKNRKFDTNGEQQQTINALLAAMDGFEGNEGVVVIAATNRPEDLDDAL 304


>gi|170055839|ref|XP_001863760.1| spastin [Culex quinquefasciatus]
 gi|167875728|gb|EDS39111.1| spastin [Culex quinquefasciatus]
          Length = 543

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T FS  A +L S  +   + ++
Sbjct: 300 PAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLV 349


>gi|159905409|ref|YP_001549071.1| proteasome-activating nucleotidase [Methanococcus maripaludis C6]
 gi|226723241|sp|A9A916|PAN_METM6 RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|159886902|gb|ABX01839.1| 26S proteasome subunit P45 family [Methanococcus maripaludis C6]
          Length = 407

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++ ++    +   L    I     ++ +
Sbjct: 181 PPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRD 232


>gi|150402844|ref|YP_001330138.1| proteasome-activating nucleotidase [Methanococcus maripaludis C7]
 gi|166199292|sp|A6VHR1|PAN_METM7 RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|150033874|gb|ABR65987.1| 26S proteasome subunit P45 family [Methanococcus maripaludis C7]
          Length = 407

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++ ++    +   L    I     ++ +
Sbjct: 181 PPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRD 232


>gi|134046787|ref|YP_001098272.1| proteasome-activating nucleotidase [Methanococcus maripaludis C5]
 gi|166199291|sp|A4G0S4|PAN_METM5 RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|132664412|gb|ABO36058.1| Proteasome-activating nucleotidase [Methanococcus maripaludis C5]
          Length = 407

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++ ++    +   L    I     ++ +
Sbjct: 181 PPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRD 232


>gi|116753771|ref|YP_842889.1| proteasome-activating nucleotidase [Methanosaeta thermophila PT]
 gi|116665222|gb|ABK14249.1| Proteasome-activating nucleotidase [Methanosaeta thermophila PT]
          Length = 404

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   ++ + +T    +        I     ++ E  DL 
Sbjct: 178 PPKGVLLYGPPGTGKTLLAKAVANSTEATFLRVVGSEFVQKYIGEGARLVRELFDLA 234


>gi|45359210|ref|NP_988767.1| proteasome-activating nucleotidase [Methanococcus maripaludis S2]
 gi|59798294|sp|Q6LWR0|PAN_METMP RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|45048085|emb|CAF31203.1| proteasome-activating nucleotidase (PAN) [Methanococcus maripaludis
           S2]
          Length = 407

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   + ++ ++    +   L    I     ++ +
Sbjct: 181 PPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRD 232


>gi|332977851|gb|EGK14604.1| crossover junction ATP-dependent DNA helicase RuvB [Desmospora sp.
           8437]
          Length = 332

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ L++I +++      +    +++           L+  DLL  +
Sbjct: 52  PLDHVLLYGPPGLGKTTLSHIIANEMGVQVRTTSGPAIERPGDLAAILTNLQQGDLLFID 111

Query: 123 DTQLFHIINSIHQY 136
           +    H +N   + 
Sbjct: 112 EI---HRLNRSVEE 122


>gi|326494204|dbj|BAJ90371.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 438

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R  +L GP G+GKS LA   + ++ ST FS
Sbjct: 167 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 198


>gi|315918924|ref|ZP_07915164.1| recombination factor protein RarA [Bacteroides sp. D2]
 gi|313692799|gb|EFS29634.1| recombination factor protein RarA [Bacteroides sp. D2]
          Length = 322

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 34/174 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI------------LIDTRKPVL 112
            IL GP G GK+ LA I ++K  +     S +   +  +               +   + 
Sbjct: 41  FILWGPPGVGKTTLAQIIANKLETPFYTLSAVTSGVKDVREVIDRAKSNRFFSQSSPILF 100

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +  +  L+ A T   S+ V  P L SR     +  + 
Sbjct: 101 IDEIHRFSKSQQDSLL----GAVENGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152

Query: 172 LPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             + + L++++ +         +R+I + +  A   + R   S   A KL++ +
Sbjct: 153 SLEKEDLQELLQRAITTDAILKERKIELKETTA---MLRF--SGGDARKLLNIL 201


>gi|310798906|gb|EFQ33799.1| male sterility protein [Glomerella graminicola M1.001]
          Length = 1233

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%)

Query: 52   AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
            A R ++        VV++ GP GSGKS LA   +    +      +      +      V
Sbjct: 1045 ANRWVEKGQGAAKTVVVVTGPCGSGKSTLAASLASWLGAPFVEGDSLHSKDAVEKMGSNV 1104

Query: 112  LLEDIDLLDF 121
             L D D   +
Sbjct: 1105 ALTDDDRSAW 1114


>gi|326790541|ref|YP_004308362.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
 gi|326541305|gb|ADZ83164.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM
           5427]
          Length = 579

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ +A   + ++    FS        + +      + +       ++  +
Sbjct: 185 LILYGPPGTGKTLMAKAIAKEAGVAFFSASGSDFVQMYVGVGASRVRDIFKEARKHEKAV 244


>gi|260892448|ref|YP_003238545.1| ABC transporter related protein [Ammonifex degensii KC4]
 gi|260864589|gb|ACX51695.1| ABC transporter related protein [Ammonifex degensii KC4]
          Length = 262

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 43/138 (31%), Gaps = 25/138 (18%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           +DL V       +R I+   + P    +L GP+GSGK+ L       SR           
Sbjct: 8   EDLSVTVGERLVLRDINLVIN-PGETHVLFGPNGSGKTTLLGTIMGFSRYRVVKGRILFR 66

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
                        EDI  L  +                 L    +  P   GV L DL  
Sbjct: 67  G------------EDITSLPVDQRA---------AKGIGLAF--QRPPSLRGVLLRDLVR 103

Query: 161 RLKAATVVKISLPDDDFL 178
           RLK   V  +    ++  
Sbjct: 104 RLKQDGVA-LERMAEELK 120


>gi|290958426|ref|YP_003489608.1| membrane-bound FtsH family protein [Streptomyces scabiei 87.22]
 gi|260647952|emb|CBG71057.1| putative membrane-bound FtsH-family protein [Streptomyces scabiei
           87.22]
          Length = 660

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 255

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 256 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 315

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P   D  L  V  +        +   L  
Sbjct: 316 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLGAVARRTPGMTGADLSNVLNE 375

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R ++ L+    L + +D 
Sbjct: 376 AALLTARSDKKLIDNHMLDEAIDR 399


>gi|228948113|ref|ZP_04110397.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811471|gb|EEM57808.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 476

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 90  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 149

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 150 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 198

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 199 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 258

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 259 DDKAA-----EITLEIAEECLQK 276


>gi|293333701|ref|NP_001169629.1| hypothetical protein LOC100383510 [Zea mays]
 gi|224030533|gb|ACN34342.1| unknown [Zea mays]
          Length = 400

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++          
Sbjct: 173 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 232

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID +                  L  ++N      +     ++ A   P   
Sbjct: 233 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 292

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L   RL     ++I LP++    +V+    A             I +  E    
Sbjct: 293 DPAL--LRPGRLD--RKIEIPLPNEQSRMEVLKIHAAG------------IAKHGEIDYE 336

Query: 211 FAEKLVDKMDNLALSR 226
              KL +  +   L  
Sbjct: 337 AVVKLAEGFNGADLRN 352


>gi|171690244|ref|XP_001910047.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945070|emb|CAP71181.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1094

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           +L GP G+GK+ LA   + +S +      A S++ + +   +
Sbjct: 788 LLYGPPGTGKTLLAKAVAKESGANMLEVSAASINDMWLGQSE 829


>gi|188586411|ref|YP_001917956.1| Holliday junction DNA helicase subunit RuvB [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179351098|gb|ACB85368.1| Holliday junction DNA helicase subunit RuvB [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 341

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ LA+I +++           +++           LE+ D+L  ++ 
Sbjct: 58  VLLYGPPGLGKTTLAHIIAEQMGVNIHVTSGPAIERPGDLAAILTNLEERDVLFIDEI 115


>gi|126728193|ref|ZP_01744009.1| ATPase, AAA family protein [Sagittula stellata E-37]
 gi|126711158|gb|EBA10208.1| ATPase, AAA family protein [Sagittula stellata E-37]
          Length = 436

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 20/173 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            +     ++  GP G GK+ +A + +D +     + S I   +  +            + 
Sbjct: 49  AAGSLGSIVFWGPPGVGKTTIARLLADATDLHFVQISAIFTGVPELRKVFEAA----KLR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
               + T LF    H  N           +  + LL+ A T   S+ +    L SR    
Sbjct: 105 RQQGHGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNRA-LLSR-SQV 162

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            V++    DD        +   DR++ +D+     ++   +        L+++
Sbjct: 163 LVLERLSVDDLEKLATRAETMLDRKLPLDEGARHALIDMADGDGRALLNLIEQ 215


>gi|120406320|ref|YP_956149.1| ATP-dependent metalloprotease FtsH [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959138|gb|ABM16143.1| membrane protease FtsH catalytic subunit [Mycobacterium vanbaalenii
           PYR-1]
          Length = 781

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 54/205 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GP G+GK+ LA   + ++    F+        + +                     
Sbjct: 199 VLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCI 258

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++        +L+ A   P      L
Sbjct: 259 IFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPAL 318

Query: 156 --------------PDLCSRLKAATVVKIS---LPDDDFLEKVIVKMFADRQIFIDKKL- 197
                         PDL  R +A   V      + DD  L+ +  +        +   + 
Sbjct: 319 LRPGRFDRQIPVSNPDLAGR-RAVLRVHSQGKPIADDADLDGLAKRTVGMSGADLANVIN 377

Query: 198 -AAYIVQRMERSL---VFAEKLVDK 218
            AA +  R   ++      E+ VD+
Sbjct: 378 EAALLTARENGTIITGPALEEAVDR 402


>gi|85709273|ref|ZP_01040338.1| 4-hydroxy-2-oxoglutarate
           aldolase/2-dehydro-3-deoxyphosphogluconatealdolase (eda)
           [Erythrobacter sp. NAP1]
 gi|85687983|gb|EAQ27987.1| 4-hydroxy-2-oxoglutarate
           aldolase/2-dehydro-3-deoxyphosphogluconatealdolase (eda)
           [Erythrobacter sp. NAP1]
          Length = 212

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF---AE 213
           DL +RL+AA VV +   DD      I +  A   + + + +         RS       E
Sbjct: 4   DLTTRLEAAPVVPLIAEDDAAKAVEITRAVAAGGLSVIEVVM--------RSANAQAGME 55

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
            ++D+ D+L +  G  +T   A  VL    Q
Sbjct: 56  AIIDQTDDLVVGAGTVLTLDQAKSVLASGAQ 86


>gi|328868721|gb|EGG17099.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 756

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G+GK+ LA   + +S  T F                  I          
Sbjct: 250 PPRGVLLYGPPGTGKTMLARTVASESGCTLFTMNGADILDKYYGVTEKAIQSIFRDAAQR 309

Query: 107 TRKPVLLEDIDLLD-FNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D L    D             L  +++ I+  +  +++     P +    
Sbjct: 310 APSIIFIDELDALCPKRDQATTEIEKRLVGCLLTLLDGINSDERVVVIGCTNRPDALDGS 369

Query: 155 L 155
           L
Sbjct: 370 L 370


>gi|326794638|ref|YP_004312458.1| ATPase AAA [Marinomonas mediterranea MMB-1]
 gi|326545402|gb|ADZ90622.1| AAA ATPase central domain protein [Marinomonas mediterranea MMB-1]
          Length = 446

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 25/138 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------KPVL 112
            IL GP G GK+  A +++    +      A       I                   + 
Sbjct: 54  FILWGPPGVGKTTFAQLFAKSMSAQFIELSAVMSGVKDIRAAVEKAKQWRTVHNSSTLLF 113

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170
           ++++   + +    F       +  + L +  T              L SR   A V ++
Sbjct: 114 VDEVHRFNKSQQDAFLPF---IEDGTFLFVGATTENPAFELNSA---LLSR---ARVYRL 164

Query: 171 SLPDDDFLEKVIVKMFAD 188
           + P  D +++V++    D
Sbjct: 165 TNPSVDVIKQVLLTALND 182


>gi|299066065|emb|CBJ37246.1| Replication-associated recombination protein A [Ralstonia
           solanacearum CMR15]
          Length = 449

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 63/187 (33%), Gaps = 21/187 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +IL GP G GK+ LA + +D   +   +              + ++        R  V +
Sbjct: 53  MILWGPPGVGKTTLARLMADAFDAEFIALSAVLSGVKDIREAVERAEQFRAHGRRTLVFV 112

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +      + A T   S+ V    L SR   A V  +   
Sbjct: 113 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKSL 165

Query: 174 DDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
            DD L+++  +   +   +         +V   +         ++ +   A ++  G T 
Sbjct: 166 SDDELKQLAERARQELGGLEWAPAALDAVVASADGDGRKLLNNIEIVTRAARAQADGETV 225

Query: 233 SLAAEVL 239
               E L
Sbjct: 226 PAIDEAL 232


>gi|302901862|ref|XP_003048527.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI
           77-13-4]
 gi|256729460|gb|EEU42814.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI
           77-13-4]
          Length = 547

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 30/196 (15%)

Query: 29  FFSFPRCLGISRDDL---LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
             +         D     LV         LI+S        +IL G SG+GK+ +A   +
Sbjct: 134 PLAERMRPRTLDDVFGQDLVGP-NGVLRSLIESSQ---VPSMILWGASGTGKTTIARCIA 189

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH------- 134
               S      A S     +         D+  L    T +F    H  N          
Sbjct: 190 QMVGSRFIELNATSTGVAEVKKLFQEAANDL-ALTGRKTIIFCDEIHRFNKAQQDVFLKP 248

Query: 135 -QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF- 192
            +  +  L+ A T   S+ V    L SR        +     + +  ++ +   + +   
Sbjct: 249 VEAGTVTLIGATTENPSFKVAAA-LLSR---CRTFTLQTLTTEDVVSILQRAIREEESVY 304

Query: 193 -----IDKKLAAYIVQ 203
                +D+ +  Y+ +
Sbjct: 305 PSTPLLDEAMITYLAR 320


>gi|256847992|ref|ZP_05553436.1| ATPase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715052|gb|EEU30029.1| ATPase [Lactobacillus coleohominis 101-4-CHN]
          Length = 427

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 30/175 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +           + +    ++   ++   +     +LL++I 
Sbjct: 43  MILYGPPGTGKTSIASAIAGSTKYAFRTLNAATDTKKDLQIVVEEAKMSGTVILLLDEIH 102

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L     D  L H+     +    +L+ A T      +  P + SR     + ++     
Sbjct: 103 RLDKAKQDFLLPHL-----ESGKIILIGATTENPYININ-PAIRSR---TQIFEVHPLKT 153

Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           + +   + +   D  R +      ID      ++             ++ ++  A
Sbjct: 154 NEMRVAVERALQDPERGLGKLPIQIDDDAETQLLTATN---GDLRSALNGLELAA 205


>gi|242036965|ref|XP_002465877.1| hypothetical protein SORBIDRAFT_01g047440 [Sorghum bicolor]
 gi|241919731|gb|EER92875.1| hypothetical protein SORBIDRAFT_01g047440 [Sorghum bicolor]
          Length = 712

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 422 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 478


>gi|145607029|ref|XP_361452.2| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15]
 gi|145014635|gb|EDJ99203.1| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15]
          Length = 618

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 41/198 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP---- 110
           V+LVGP G+GK+ LA   + ++                    A+ +  +    +      
Sbjct: 182 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEVFVGVGARRVRDLFTAAKTASPAI 241

Query: 111 VLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           V ++++D +                  L   ++   Q    +++ A  FP S    L   
Sbjct: 242 VFIDELDAIGGKRNAKDPSYAKQTLNQLLTELDGFEQDSGVIVIAATNFPRSLDKAL--- 298

Query: 159 CSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL-V 216
            +R  +    V++ LPD      ++        I  D     Y    + RS        +
Sbjct: 299 -TRPGRFDRHVQVDLPDIRGRIAILKHHATK--IKADDN-IDYEA--IARSTPGLSGAEL 352

Query: 217 DKM-DNLAL-SRGMGITR 232
           + + +  A+ +     T 
Sbjct: 353 ESIVNQAAIHASKTRKTI 370


>gi|119496141|ref|XP_001264844.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Neosartorya fischeri NRRL 181]
 gi|119413006|gb|EAW22947.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Neosartorya fischeri NRRL 181]
          Length = 736

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 513 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 558



 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +         A S+ S +    +  L E  +  
Sbjct: 205 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIPISAPSIVSGMSGESEKALREHFEEA 261


>gi|115469952|ref|NP_001058575.1| Os06g0714500 [Oryza sativa Japonica Group]
 gi|53791771|dbj|BAD53565.1| putative spastin protein [Oryza sativa Japonica Group]
 gi|113596615|dbj|BAF20489.1| Os06g0714500 [Oryza sativa Japonica Group]
 gi|125556743|gb|EAZ02349.1| hypothetical protein OsI_24453 [Oryza sativa Indica Group]
 gi|125598493|gb|EAZ38273.1| hypothetical protein OsJ_22651 [Oryza sativa Japonica Group]
 gi|215712288|dbj|BAG94415.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 393

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 149


>gi|53720212|ref|YP_109198.1| recombination factor protein RarA [Burkholderia pseudomallei
           K96243]
 gi|53725979|ref|YP_103691.1| recombination factor protein RarA [Burkholderia mallei ATCC 23344]
 gi|52210626|emb|CAH36610.1| putative ATPase protein [Burkholderia pseudomallei K96243]
 gi|52429402|gb|AAU49995.1| ATPase, AAA family protein [Burkholderia mallei ATCC 23344]
          Length = 455

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +        +  A       I        + ++    + T L
Sbjct: 69  MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 127

Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q   +LL          + A T   S+ V    L SR   A V  +  
Sbjct: 128 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 181

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             +D L +++ K   D     +  D K    +V   +     A + ++ ++  
Sbjct: 182 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 230


>gi|146278540|ref|YP_001168699.1| recombination factor protein RarA [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556781|gb|ABP71394.1| Recombination protein MgsA [Rhodobacter sphaeroides ATCC 17025]
          Length = 437

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 24/175 (13%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            S     +IL GP G GK+ +A + + ++        A      + D RK      +   
Sbjct: 50  ASGSLSSLILWGPPGVGKTTIARLLAKETDLAFVQISAIFTG--VPDLRKVFEAARLRRA 107

Query: 120 DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAA 165
           +   T LF    H  N   Q          ++L+   T              L SR   A
Sbjct: 108 NGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LMSR---A 161

Query: 166 TVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            V+ +       LE++  +   +  R + +D      +++  +        LV++
Sbjct: 162 QVIVLERLSLADLERLAQRAEHELGRALPLDGPAREALLEMADGDGRALLNLVEQ 216


>gi|326911480|ref|XP_003202086.1| PREDICTED: transitional endoplasmic reticulum ATPase-like, partial
           [Meleagris gallopavo]
          Length = 142

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P R ++L GP G+GK+ +A   ++++ +  F
Sbjct: 109 PPRGILLYGPPGTGKTLIARAVANETGAFFF 139


>gi|326937857|gb|AEA13753.1| cell division protein ftsH [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 633

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGMG 229
           A  L + ++  AL     
Sbjct: 369 A-DLENLLNEAALVAARR 385


>gi|325095497|gb|EGC48807.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H88]
          Length = 751

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 527 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 572



 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  D  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266


>gi|322701880|gb|EFY93628.1| AAA family ATPase [Metarhizium acridum CQMa 102]
          Length = 774

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 518 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 567


>gi|293191262|ref|ZP_06609169.1| cell division protein FtsH [Actinomyces odontolyticus F0309]
 gi|292820587|gb|EFF79557.1| cell division protein FtsH [Actinomyces odontolyticus F0309]
          Length = 678

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++ +  FS        + +      + E  +    N  
Sbjct: 210 RGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMELYVGVGASRVRELFERAKKNAP 269

Query: 125 QL 126
            +
Sbjct: 270 AI 271


>gi|255514182|gb|EET90444.1| AAA family ATPase, CDC48 subfamily [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 756

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 80/214 (37%), Gaps = 42/214 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L G  G+GK+ LA   +++S +                   + L SI I+ ++ 
Sbjct: 253 PPKGVLLYGAPGTGKTLLAKAVANESDANFIDISGPELVSKFVGESEERLRSIFIEAKEK 312

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 313 APTIIFMDEIDAIAPRREEATNEVERRMVSQLLTLMDGMGSRGQVIVIGATNRPDAID-- 370

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L    +    ++I +PD +  ++++      R + + K +       ++  L     
Sbjct: 371 -PALRRPGRFDREIEIGVPDRNARKEILQ--IHTRNMPLAKDV------NID-DLADITH 420

Query: 215 LVDKMDNLALSRGMGIT--RSLAAEVLKETQQCD 246
                D  AL+R   +   R +  EVL +    +
Sbjct: 421 GYTGADLTALAREAAMATLRKILPEVLNKKSIPN 454


>gi|242053361|ref|XP_002455826.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor]
 gi|241927801|gb|EES00946.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor]
          Length = 710

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 38/190 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           V+LVGP G+GK+ LA   + ++    FS      + + +                     
Sbjct: 259 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 318

Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--P 156
           + +++ID +  +              QL   ++   Q +  +++ A  FP S    L  P
Sbjct: 319 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP 378

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
               R      + +  PD +   +++    +   I     +   I+ R       A  L 
Sbjct: 379 ---GRFD--RHIVVPNPDVEGRRQILESHMSK--ILKSDDVDLMIIARGTPGFSGA-DLA 430

Query: 217 DKMDNLALSR 226
           + ++  AL  
Sbjct: 431 NLVNVAALKA 440


>gi|240274120|gb|EER37638.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H143]
          Length = 751

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 527 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 572



 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  D  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266


>gi|228970254|ref|ZP_04130914.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228789489|gb|EEM37408.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
          Length = 612

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 347

Query: 212 AEKLVDKMDNLALSRGMG 229
           A  L + ++  AL     
Sbjct: 348 A-DLENLLNEAALVAARR 364


>gi|238485976|ref|XP_002374226.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220699105|gb|EED55444.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 527

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 67/199 (33%), Gaps = 31/199 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111
             +IL G  G+GK+ +A + +    S                   + +   + +  RK +
Sbjct: 150 PSMILWGGPGTGKTTIARVIASMVGSRFVEINSTSSGVAECKKIFSDAKSELNLTGRKTI 209

Query: 112 LL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +  ++I     +   +F       +     L+ A T   S+ V    L SR        +
Sbjct: 210 IFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQNA-LLSR---CRTFTL 262

Query: 171 SLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
           +   D+ ++ ++ +              +D +L  Y+ +  +     A   ++ ++    
Sbjct: 263 AKLTDEDVKSILDRALQVEGPNYSPSALVDDELINYLAKFSD---GDARTSLNLLELAMD 319

Query: 225 SRGMG-ITRSLAAEVLKET 242
                 IT+      L +T
Sbjct: 320 LSKRPGITKEELKRSLTKT 338


>gi|242013108|ref|XP_002427257.1| DNA replication licensing factor Mcm2, putative [Pediculus humanus
           corporis]
 gi|212511590|gb|EEB14519.1| DNA replication licensing factor Mcm2, putative [Pediculus humanus
           corporis]
          Length = 854

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 19/83 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------------SNIAKSLDSILI 105
             ++LVG SG+GKS L    S  +  + F                   SN      ++++
Sbjct: 333 SHLLLVGDSGTGKSHLLRYASRIANHSVFTTGVGSTTAGLTVAAVRESSNWTLEAGALVL 392

Query: 106 DTRKPVLLEDIDLLDFNDTQLFH 128
                  ++D + +   D    H
Sbjct: 393 SDGGICCIDDFNSIREQDRASIH 415


>gi|213407452|ref|XP_002174497.1| cell division cycle protein [Schizosaccharomyces japonicus yFS275]
 gi|212002544|gb|EEB08204.1| cell division cycle protein [Schizosaccharomyces japonicus yFS275]
          Length = 745

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 250 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 309

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                +QL  +++ +    + ++M A   P S    
Sbjct: 310 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 369

Query: 155 L 155
           L
Sbjct: 370 L 370


>gi|218895201|ref|YP_002443612.1| cell division protein FtsH [Bacillus cereus G9842]
 gi|228898819|ref|ZP_04063102.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 4222]
 gi|218542807|gb|ACK95201.1| cell division protein FtsH [Bacillus cereus G9842]
 gi|228860844|gb|EEN05221.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 4222]
          Length = 633

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGMG 229
           A  L + ++  AL     
Sbjct: 369 A-DLENLLNEAALVAARR 385


>gi|118117610|ref|XP_423903.2| PREDICTED: similar to valosin-containing protein, partial [Gallus
           gallus]
          Length = 169

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P R ++L GP G+GK+ +A   ++++ +  F
Sbjct: 136 PPRGILLYGPPGTGKTLIARAVANETGAFFF 166


>gi|148228613|ref|NP_001079582.1| nuclear VCP-like [Xenopus laevis]
 gi|28278757|gb|AAH44980.1| MGC52979 protein [Xenopus laevis]
          Length = 854

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R  +L GP G GK+ LA   + +         A  +                D  +  
Sbjct: 293 PPRGFLLHGPPGCGKTLLAQAIAGELDMPILKVAATEMVSGVSGESEQKLRELFDQAVSS 352

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   NS+      L++ A   P S 
Sbjct: 353 APCILFIDEIDSITPKREVASKDMERRIVAQLLTCMDDLNSLAVTTQVLVIGATNRPDSL 412

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
              L       +A      + + +PD+   ++++  +   R++ + +
Sbjct: 413 DPALR------RAGRFDREICLGIPDEGARKRILQTLC--RKLKLPE 451


>gi|72111462|ref|XP_790164.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115951765|ref|XP_001175913.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 889

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L GP G GK+ LA   + +SR                    S +    D    +
Sbjct: 381 PPRGVLLYGPPGVGKTMLARAVALESRVHIVVINMPEVLSKFYGESESRLRALFDEAAQN 440

Query: 107 TRKPVLLEDIDLLD 120
               +L++++D L 
Sbjct: 441 APSLILIDELDALC 454


>gi|85709567|ref|ZP_01040632.1| Cell division cycle protein [Erythrobacter sp. NAP1]
 gi|85688277|gb|EAQ28281.1| Cell division cycle protein [Erythrobacter sp. NAP1]
          Length = 742

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 40/196 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + V+L GP G+GK+ LA   +++S +              +    K L  +  +  + 
Sbjct: 208 PPKGVLLHGPPGTGKTRLAQAVANESDAEFFTINGPEIMGSGYGESEKRLREVFEEATRA 267

Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +                 Q+  +++ I    + +++ A   P +    
Sbjct: 268 SPAIVFIDEIDSIAPKRSGVPGEAEKRLVAQMLTLMDGIESRANLVVIAATNRPDAIDEA 327

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L     R     V  I +PD     +++      R + +++ +    + R+    V A  
Sbjct: 328 LRR-PGRFDREIV--IGVPDQRGRREIL--AIHTRGMPLEEAVDLSELARVTHGFVGA-- 380

Query: 215 LVDKMDNLALSRGMGI 230
                D  AL+R   I
Sbjct: 381 -----DIAALAREAAI 391


>gi|71653872|ref|XP_815566.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma
           cruzi strain CL Brener]
 gi|70880630|gb|EAN93715.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 657

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 37/155 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110
            +LVGP G GK+ LA   + ++    F       D + +                     
Sbjct: 222 ALLVGPPGCGKTMLAKAIAKEAGVNFFYATGSEFDEMYVGVGSRRVRELFAAAKANSPAL 281

Query: 111 VLLEDIDLLDFNDTQLFHII-----NSIHQY-------DSSLLMTARTFPVSWGVCLPDL 158
           + +++ID L    ++  H       N +          +S +++ A   P +    L   
Sbjct: 282 IFIDEIDALGGKRSRTDHAYSRMTLNQLLAEMDGFSSKESIIVLAATNTPDALDKAL--- 338

Query: 159 CSRL-KAATVVKISLPD----DDFLEKVIVKMFAD 188
            +R  +  T + +  PD    ++ LE  + K+ AD
Sbjct: 339 -TRPGRFDTTISVDPPDMKGREEVLEVYLNKVKAD 372


>gi|325660833|ref|ZP_08149461.1| hypothetical protein HMPREF0490_00193 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472907|gb|EGC76117.1| hypothetical protein HMPREF0490_00193 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 280

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 18/104 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDK----------SRSTRFSNIAKSLDSI-----LIDTRKPV 111
            +L GP G+GKS +A   ++           +      +    L+        +   + +
Sbjct: 113 FLLWGPIGTGKSYIAGCIANALLNQEITVKMTNFNTIIDDMFPLEDKTEYINALAKYELL 172

Query: 112 LLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWG 152
           +L+D+     ++  L   F +I+  ++    L++T         
Sbjct: 173 ILDDLGTERSSEYALGIVFSVIDRRYRSGRPLIVTTNLPIKQLK 216


>gi|325293302|ref|YP_004279166.1| recombination factor protein RarA [Agrobacterium sp. H13-3]
 gi|325061155|gb|ADY64846.1| recombination factor protein RarA [Agrobacterium sp. H13-3]
          Length = 438

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 31/188 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111
           R+ID   S     +I  GP G+GK+ +A + S ++     + S I   +  +        
Sbjct: 47  RMID---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAA- 102

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
                  ++   T LF    H  N           +  + +L+  T              
Sbjct: 103 ---RTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTIILVGATTENPSFELNAA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215
           L SR   A V+     D++ L +++ +        + + ++  A +++  +        L
Sbjct: 157 LLSR---ARVLTFGSHDEESLGELLKRAEEAEGKPLPLTEEARASLIRMADGDGRAVLTL 213

Query: 216 VDKMDNLA 223
            +++   A
Sbjct: 214 AEEVWRAA 221


>gi|296420748|ref|XP_002839930.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636138|emb|CAZ84121.1| unnamed protein product [Tuber melanosporum]
          Length = 958

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             V+L GP G+GK+ LA   + +S +T   
Sbjct: 687 PGVLLYGPPGTGKTLLARAVAKESGATVLE 716


>gi|300088434|ref|YP_003758956.1| RecA protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528167|gb|ADJ26635.1| recA protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 342

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 13/114 (11%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID-----L 118
            RV  + GP GSGK+ LA     + +          ++         +   D+D      
Sbjct: 64  GRVTEIYGPEGSGKTTLAQHVIAQCQKLGGKAFYIDVEHAFDPKYAKLCGIDLDEFYIAQ 123

Query: 119 LDFNDTQLFHIINSIHQYDSSLL----MTARTFPVSWGVCLPD----LCSRLKA 164
            D  +  L      +    + L+    + A          + D    L +RL +
Sbjct: 124 PDAGEEALDICEKLVRSGGADLVVVDSVAALVPKAELEGDMGDSHVGLQARLMS 177


>gi|284165453|ref|YP_003403732.1| ATPase AAA [Haloterrigena turkmenica DSM 5511]
 gi|284015108|gb|ADB61059.1| AAA family ATPase, CDC48 subfamily [Haloterrigena turkmenica DSM
           5511]
          Length = 743

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEE 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ +      +++ A     S    
Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDS---V 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    ++I +PD+   E+++      R + +   +
Sbjct: 339 DPALRRPGRFDREIEIGVPDEVGREEILQ--IHTRGMPLSDDV 379



 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   V+L GP G+GK+ +A   ++++ +   S
Sbjct: 495 PPAGVLLYGPPGTGKTLMAKAVANETNANFIS 526


>gi|320010035|gb|ADW04885.1| ATP-dependent metalloprotease FtsH [Streptomyces flavogriseus ATCC
           33331]
          Length = 682

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 209 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 268

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 269 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 328

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P  +D  L  V  +        +   L  
Sbjct: 329 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAEDVDLNAVARRTPGFTGADLSNVLNE 388

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R  + L+    L + +D 
Sbjct: 389 AALLTARSNKKLIDNHMLDEAIDR 412


>gi|242064412|ref|XP_002453495.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor]
 gi|241933326|gb|EES06471.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor]
          Length = 400

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++          
Sbjct: 173 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 232

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID +                  L  ++N      +     ++ A   P   
Sbjct: 233 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 292

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L   RL     ++I LP++    +V+    A             I +  E    
Sbjct: 293 DPAL--LRPGRLD--RKIEIPLPNEQSRMEVLKIHAAG------------IAKHGEIDYE 336

Query: 211 FAEKLVDKMDNLALSR 226
              KL +  +   L  
Sbjct: 337 AVVKLAEGFNGADLRN 352


>gi|183602057|ref|ZP_02963426.1| hypothetical protein BIFLAC_07261 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219682966|ref|YP_002469349.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190543|ref|YP_002967937.1| hypothetical protein Balac_0499 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195949|ref|YP_002969504.1| hypothetical protein Balat_0499 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218942|gb|EDT89584.1| hypothetical protein BIFLAC_07261 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620616|gb|ACL28773.1| ATP-dependent zinc metallopeptidase involved in cell division
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248935|gb|ACS45875.1| hypothetical protein Balac_0499 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250503|gb|ACS47442.1| hypothetical protein Balat_0499 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178278|gb|ADC85524.1| FtsH [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 698

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    ++        + +      + +  D    N  
Sbjct: 252 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 311

Query: 125 QL 126
            +
Sbjct: 312 AI 313


>gi|118368535|ref|XP_001017474.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89299241|gb|EAR97229.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 852

 Score = 40.1 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
           + V++L GP GSGK+ LA   +           A        +     L+E I+ +  N+
Sbjct: 266 NSVILLAGPPGSGKTTLARTVAKHCGYKVIEINASE------ERTAAKLIEKIETVTRNE 319

Query: 124 TQLFHIINSIHQYD 137
              F   N   +  
Sbjct: 320 ALQFKNDNKAEEQK 333


>gi|332373814|gb|AEE62048.1| unknown [Dendroctonus ponderosae]
          Length = 391

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 168 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 219

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 220 ------MFNYAKDHQ 228


>gi|239610529|gb|EEQ87516.1| sister chromatid cohesion factor [Ajellomyces dermatitidis ER-3]
          Length = 957

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +V++L GP G GK+ LA++ + ++        ++  +S D +    R  V  E++  +  
Sbjct: 270 KVLLLTGPPGLGKTTLAHVCARQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVSV 329

Query: 122 N 122
           +
Sbjct: 330 D 330


>gi|227834066|ref|YP_002835773.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
 gi|262183448|ref|ZP_06042869.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
 gi|227455082|gb|ACP33835.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC
           700975]
          Length = 818

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 67/198 (33%), Gaps = 43/198 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKQNSP 260

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     +  +L+ A   P     
Sbjct: 261 CIIFVDEIDAVGRQRGSGTGGGHDEREQTLNQLLVEMDGFGDREGVILIAATNRPDILDP 320

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       + ++ PD    E+++     D+ +  +  +A  + +R    + 
Sbjct: 321 AL------LRPGRFDRQIPVTNPDLAGREQILRVHAKDKPLAKEVDVAQ-LAKRTA-GMS 372

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  AL    
Sbjct: 373 GA-DLANVLNEAALLTAR 389


>gi|198420499|ref|XP_002126380.1| PREDICTED: similar to proteasome 26S ATPase subunit 3 [Ciona
           intestinalis]
          Length = 439

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 50/189 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ LA   + +++ST        L  + I     ++          
Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKER 278

Query: 113 ------LEDIDLLD---------------------FNDTQLFHIINSIHQYDSSLLMTAR 145
                 ++++D +                       N    F   N I       ++ A 
Sbjct: 279 KPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFEPYNDIK------VIAAT 332

Query: 146 TFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
                    L  L S RL     ++  +P+++   +++      R++ +   +    + R
Sbjct: 333 NRVDILDPAL--LRSGRLD--RKIEFPVPNEEARARILQ--IHSRKMNVSADVNFEELAR 386

Query: 205 MERSLVFAE 213
                  A+
Sbjct: 387 CTDDFNGAQ 395


>gi|254449265|ref|ZP_05062712.1| ATPase, AAA family [gamma proteobacterium HTCC5015]
 gi|198261120|gb|EDY85418.1| ATPase, AAA family [gamma proteobacterium HTCC5015]
          Length = 443

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 74/180 (41%), Gaps = 35/180 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILI----DTRKPVL- 112
           +I  GP G+GK+ LA + ++   +             +I  ++D   +    D R  VL 
Sbjct: 57  MIFWGPPGTGKTTLARLIAEYCDAEFMTLSAVLSGVKDIRAAVDEAKLRRRQDGRATVLF 116

Query: 113 LEDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           ++++   + +    F  HI     +  +   + A T   S+ +    L SR++      +
Sbjct: 117 VDEVHRFNKSQQDAFLPHI-----EDGTIFFVGATTENPSFELNNA-LLSRVR---TYVL 167

Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              DDD +E+++ +   D         + ++ +    +++  +     A K+++ ++  A
Sbjct: 168 KSFDDDDIEQIVDRALQDERDGLGQLGVRLEPEARELLLRSAD---GDARKVLNLLEVSA 224


>gi|226505536|ref|NP_001148485.1| 26S protease regulatory subunit S10B [Zea mays]
 gi|194702936|gb|ACF85552.1| unknown [Zea mays]
 gi|195619706|gb|ACG31683.1| 26S protease regulatory subunit S10B [Zea mays]
          Length = 400

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++          
Sbjct: 173 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 232

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID +                  L  ++N      +     ++ A   P   
Sbjct: 233 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 292

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L   RL     ++I LP++    +V+    A             I +  E    
Sbjct: 293 DPAL--LRPGRLD--RKIEIPLPNEQSRMEVLKIHAAG------------IAKHGEIDYE 336

Query: 211 FAEKLVDKMDNLALSR 226
              KL +  +   L  
Sbjct: 337 AVVKLAEGFNGADLRN 352


>gi|195492546|ref|XP_002094038.1| GE21612 [Drosophila yakuba]
 gi|194180139|gb|EDW93750.1| GE21612 [Drosophila yakuba]
          Length = 931

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA   S +
Sbjct: 277 PSRGLLLHGPPGCGKTFLARAISGQ 301



 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 684 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 732


>gi|189241497|ref|XP_967205.2| PREDICTED: similar to neuron navigator 2 [Tribolium castaneum]
          Length = 1801

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 24/46 (52%)

Query: 65   RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            R ++L G  G+GK+ LA   ++     +  + A+++ +  +D +  
Sbjct: 1484 RRLVLCGAPGTGKTHLATRLAEFHAQAQGRDPAEAVATFNVDNKSA 1529


>gi|166362932|ref|YP_001655205.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166085305|dbj|BAG00013.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 654

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 58/220 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++  T FS  A     + + T                   
Sbjct: 240 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFAQAKKNAPSI 299

Query: 111 VLLEDIDLL--------------DFNDTQLFHIINSIH----QYDSSLLMTARTFPVSWG 152
           + ++++D +              D  +  L  ++  +     +    +++ A   P +  
Sbjct: 300 IFIDELDAIGKSRSSGSGTSGSNDEREQTLNQLLTEMDGFSPKEAVVIVLAATNRPETLD 359

Query: 153 VCL--------------PDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFID 194
             L              PDL  RL      A  V++    D  L+ +  +        + 
Sbjct: 360 AALLRPGRFDRQVLVDRPDLAGRLAILEIYAQRVQMGE--DVNLKAIATQTPGFAGADLA 417

Query: 195 KKL--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230
             +  AA +  R  R  V      + ++     L +   +
Sbjct: 418 NLVNEAALLAARNNREKVSQIDFKEAIERVIAGLEKKSRV 457


>gi|153871193|ref|ZP_02000427.1| ATP-dependent Clp protease ATP-binding subunit clpX [Beggiatoa sp.
           PS]
 gi|152072342|gb|EDN69574.1| ATP-dependent Clp protease ATP-binding subunit clpX [Beggiatoa sp.
           PS]
          Length = 186

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 31/125 (24%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH-------------------SAIEQAVR 54
           D +KN+  +++  QL    P+ + +  +D ++                     +  Q+  
Sbjct: 53  DSKKNEGEESQAHQLP--TPQEINLHLNDYVIGQDYAKKVLSVAVYNHYKRLDSNRQSEN 110

Query: 55  LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            ++         V+L+GP+G GK+ LA   +      RF  +  ++      T    + E
Sbjct: 111 DVEI----SKSNVLLIGPTGCGKTLLAETLA------RFLEVPFAMADATTLTEAGYVGE 160

Query: 115 DIDLL 119
           D++ +
Sbjct: 161 DVEHI 165


>gi|327350812|gb|EGE79669.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 725

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 501 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 546



 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  D  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266


>gi|322818611|gb|EFZ25968.1| mitochondrial ATP-dependent zinc metallopeptidase, putative
           [Trypanosoma cruzi]
          Length = 595

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 37/155 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110
            +LVGP G GK+ LA   + ++    F       D + +                     
Sbjct: 160 ALLVGPPGCGKTMLAKAIAKEAGVNFFYATGSEFDEMYVGVGSRRVRELFAAAKANSPAL 219

Query: 111 VLLEDIDLLDFNDTQLFHII-----NSIHQY-------DSSLLMTARTFPVSWGVCLPDL 158
           + +++ID L    ++  H       N +          +S +++ A   P +    L   
Sbjct: 220 IFIDEIDALGGKRSRTDHAYSRMTLNQLLAEMDGFSSKESIIVLAATNTPDALDKAL--- 276

Query: 159 CSRL-KAATVVKISLPD----DDFLEKVIVKMFAD 188
            +R  +  T + +  PD    ++ LE  + K+ AD
Sbjct: 277 -TRPGRFDTTISVDPPDMKGREEVLEVYLNKVKAD 310


>gi|320582342|gb|EFW96559.1| AAA-type ATPase [Pichia angusta DL-1]
          Length = 439

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P   ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 164 PVSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 201


>gi|320580205|gb|EFW94428.1| putative dynein heavy chain protein [Pichia angusta DL-1]
          Length = 4106

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 15/94 (15%)

Query: 56   IDSWPSWPSRVVILVGPSGSGKSCLAN--IW-----------SDKSRSTRFSNIAKSLDS 102
            ID     P   +ILVGPSGSGK+ L     W           S K     F    + L  
Sbjct: 2717 IDRVLKNPQGHMILVGPSGSGKTTLTKFVAWINGLSIHQLSVSRKYTLAEFDATLRELLR 2776

Query: 103  ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136
               +  K   +  ID     +T     +N++   
Sbjct: 2777 RAAEGDKLCFI--IDESAILETAFLERMNTLLAN 2808


>gi|242052273|ref|XP_002455282.1| hypothetical protein SORBIDRAFT_03g007760 [Sorghum bicolor]
 gi|241927257|gb|EES00402.1| hypothetical protein SORBIDRAFT_03g007760 [Sorghum bicolor]
          Length = 664

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P R++ L+GPSGSGK+ L N+ + +  +
Sbjct: 85  PGRLLALMGPSGSGKTTLLNVLAGQLTA 112


>gi|261198899|ref|XP_002625851.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081]
 gi|239595003|gb|EEQ77584.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081]
          Length = 751

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 527 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 572



 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  D  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266


>gi|225425863|ref|XP_002266185.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 825

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 29/108 (26%)

Query: 60  PSW----PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILID- 106
           P W    P   ++L GP G GK+ LA+  +++        S +   S ++ + +  + + 
Sbjct: 275 PRWLGVRPMAGILLHGPPGCGKTKLAHAIANETKVPFYKISATEVVSGVSGASEENIREL 334

Query: 107 -------TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144
                      V +++ID +           N   + +  +   LMT 
Sbjct: 335 FSKAYRTAPSIVFIDEIDAIASKRE------NLNREMERRIVTQLMTC 376



 Score = 36.7 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 20/46 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            +L GP G GK+ +A   ++++ +         L +  +   +  +
Sbjct: 591 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAV 636


>gi|206586968|emb|CAQ17552.1| putative transposition helper protein (partial sequenc c terminus)
           [Ralstonia solanacearum MolK2]
          Length = 389

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 25/114 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GPSG GK+ +A+  + ++          +   +++                     
Sbjct: 231 VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATARQQNRLREFFNRAVIG 290

Query: 111 ---VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVSWGVCLPD 157
              +++++I  L F   +  LF   N +       ++++T+      W     D
Sbjct: 291 PRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLPFTQWATAFAD 342


>gi|254380848|ref|ZP_04996214.1| AAA ATPase [Streptomyces sp. Mg1]
 gi|194339759|gb|EDX20725.1| AAA ATPase [Streptomyces sp. Mg1]
          Length = 422

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 34/164 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR-----------STRF---SNIAKSLDSILIDTR 108
           P R V+L GP G+GKS  A+  + +             +  +   S + +  D I     
Sbjct: 195 PPRAVMLFGPPGTGKSTFAHAIASRLGWPFLELFPARLAAEYGLASGLNRRFDEIARLDH 254

Query: 109 KPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             V +++++ +                +L   +      D  LL+ A     +       
Sbjct: 255 VLVFIDEVEEIAGTRSGADATAVGVVNELLKAVVRFRGQDGRLLVCATNDVTTLDSAF-- 312

Query: 158 LCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
               L+      V+ I  PD      +     A      D    
Sbjct: 313 ----LRHGRFDYVLPIGPPDHRARTALWESYLARAGAEADSAAL 352


>gi|149045257|gb|EDL98343.1| Werner helicase interacting protein 1, isoform CRA_a [Rattus
           norvegicus]
          Length = 334

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA+I ++ S+      +  S  +   +      + D+     N+ 
Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311

Query: 125 QLF 127
             F
Sbjct: 312 SFF 314


>gi|126460718|ref|YP_001056996.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum
           calidifontis JCM 11548]
 gi|126250439|gb|ABO09530.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum calidifontis JCM
           11548]
          Length = 731

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 71/203 (34%), Gaps = 37/203 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + ++L+GP G+GK+ LA   ++++ +   +                 L  I  + +  
Sbjct: 212 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 271

Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ + +    +++ A   P +    
Sbjct: 272 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDA---V 328

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P L    +    + I+ PD     +++V     R + +   +    +  +      A+ 
Sbjct: 329 DPALRRPGRFDREIWINPPDFKGRYEILV--IHTRNMPLGPDVDLRKLAEITHGFTGAD- 385

Query: 215 LVDKMDNLAL--SRGMGITRSLA 235
            +  +   A   +    I   L 
Sbjct: 386 -LAALAREAAMSALRRAIQSGLI 407



 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 16/70 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDTRKP 110
           ++L GP G+GK+ LA   + +S +   +     +                    +     
Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFVAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550

Query: 111 VLLEDIDLLD 120
           + +++ID L 
Sbjct: 551 IFIDEIDALA 560


>gi|39577681|gb|AAR28448.1| Vps4p [Pichia angusta]
          Length = 439

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P   ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 164 PVSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 201


>gi|46198346|ref|YP_004013.1| Holliday junction DNA helicase B [Thermus thermophilus HB27]
 gi|47606090|sp|P61537|RUVB_THET2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|46195968|gb|AAS80386.1| holliday junction DNA helicase ruvB [Thermus thermophilus HB27]
          Length = 336

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113
           P   ++L GP G GK+ LA++ + +           +        ++ +  ++    + +
Sbjct: 49  PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 108

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157
           ++I  L     +  H+  ++  +   +++       +  + LP                 
Sbjct: 109 DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 166

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      ++   P++  L + +++      + I ++ A  I +R   ++  A++L  
Sbjct: 167 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 224

Query: 218 KMDNLALSRGMGI 230
           ++ + A   G  +
Sbjct: 225 RVRDFAQVAGEEV 237


>gi|315925531|ref|ZP_07921741.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621072|gb|EFV01043.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 652

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 231 VLLVGPPGTGKTMLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 290

Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++   + +  +++ A   P S     
Sbjct: 291 VFVDEIDAIGQKRAGGKFSGNDEREQTLNQLLTEMDGFDENNGVVVLAATNRPESLDPAL 350

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 351 TRPGRFDRRVPVDLPDLKGR 370


>gi|317126219|ref|YP_004100331.1| IstB transposition helper protein [Intrasporangium calvum DSM
           43043]
 gi|315590307|gb|ADU49604.1| IstB transposition helper protein [Intrasporangium calvum DSM
           43043]
          Length = 273

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 14/105 (13%)

Query: 67  VILVGPSGSGKSCLA---NIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114
           ++L+GP G GK+ LA      + ++    +   A  L +I                ++++
Sbjct: 120 ILLIGPPGVGKTHLAVGLARAAAQAGYRTYFTTAADLAAIEGRWATTMRFFAGPTCLVID 179

Query: 115 DIDLLDFNDTQLFHIINSIHQY--DSSLLMTARTFPVSWGVCLPD 157
           ++  L         +   + Q    +S+++T+     SWG  L D
Sbjct: 180 ELGYLPLPAEAASALFQVVSQRYLKTSIILTSNRGVGSWGEVLGD 224


>gi|302772841|ref|XP_002969838.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii]
 gi|302806886|ref|XP_002985174.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii]
 gi|300147002|gb|EFJ13668.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii]
 gi|300162349|gb|EFJ28962.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii]
          Length = 398

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 171 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIRE 222


>gi|270340043|ref|ZP_06006828.2| replication-associated recombination protein A [Prevotella
           bergensis DSM 17361]
 gi|270332946|gb|EFA43732.1| replication-associated recombination protein A [Prevotella
           bergensis DSM 17361]
          Length = 424

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 22/168 (13%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI-----------LIDTRKPVL- 112
            IL GP G GK+ LA I +   K      S +   +  +             ++  P+L 
Sbjct: 42  FILWGPPGVGKTTLAQIIAGMLKVPFFTLSAVTSGVKDVREVIERAKQGRFFNSGSPILF 101

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +     L+ A T   S+ V  P L SR +   +  + 
Sbjct: 102 IDEIHRFSKSQQDSLL----GAVERGVVTLIGATTENPSFEVIRP-LLSRCQLYVLKSLE 156

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
              +D ++ +   +  D ++     +   +   M  S   A KL++ +
Sbjct: 157 K--EDLMKILERAIHEDSELKKKDIVLQEVGAIMRYSGGDARKLLNIL 202


>gi|258543659|ref|YP_003189092.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634737|dbj|BAI00713.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637793|dbj|BAI03762.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640847|dbj|BAI06809.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643902|dbj|BAI09857.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646957|dbj|BAI12905.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650010|dbj|BAI15951.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653000|dbj|BAI18934.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656054|dbj|BAI21981.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 645

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 47/198 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 192 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKAAPCI 251

Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGV 153
           + +++ID +            ++ +    +N +          +  +L+ A   P     
Sbjct: 252 IFIDEIDAVGRHRGAGMGGGNDERE--QTLNQMLVEMDGFESNEGVILIAATNRPDVLDP 309

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    EK++      R++ +   +   I+ R      
Sbjct: 310 AL------LRPGRFDRQVVVPNPDVSGREKILRVHM--RKVPLASDVDPRIIARGTPGFS 361

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  ALS   
Sbjct: 362 GA-DLANLVNEAALSAAR 378


>gi|225682615|gb|EEH20899.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb03]
          Length = 553

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 78/219 (35%), Gaps = 38/219 (17%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------- 95
           LV  +      LI+         ++L G +G+GK+ +A + +    S             
Sbjct: 154 LVGPS-GVLRGLIEQDR---VPSMVLWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVA 209

Query: 96  -----IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                 A++ + + +  +K +L  ++I     +   +F  ++ +     +L+ T    P 
Sbjct: 210 ECKKLFAEARNELSLSGKKTILFCDEIHRFSKSQQDVF--LSPVESGQITLIGTTTENPS 267

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQ 203
            + V    L SR        +S   D  +  ++ +              +D +L  Y+  
Sbjct: 268 -FKVQNA-LLSR---CRTFTLSKLTDQDIIMILNRALEVEGPNYSPSSLVDDELIKYLAA 322

Query: 204 RMERSLVFAEKLVD-KMD---NLALSR---GMGITRSLA 235
             +     +  L++  MD      +++      +TR+L 
Sbjct: 323 FADGDARTSLNLLELAMDLSHREGMTKDELKKSLTRTLV 361


>gi|238487902|ref|XP_002375189.1| ABC transporter, putative [Aspergillus flavus NRRL3357]
 gi|220700068|gb|EED56407.1| ABC transporter, putative [Aspergillus flavus NRRL3357]
          Length = 1389

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R+  LVG SG+GK+ L N  + +      + +       L    + +L  D      +
Sbjct: 864 PGRLTALVGASGAGKTTLLNTLAQRINFGVVTAVE------LASKPQLLLFLDEPTSGLD 917

Query: 123 DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPDL 158
               F+I   +  +     ++L T             DL
Sbjct: 918 SLAAFNIVRFLRRLADAGQAILCTIHQPSAVLFEHFDDL 956


>gi|294659828|ref|XP_462254.2| DEHA2G16302p [Debaryomyces hansenii CBS767]
 gi|199434262|emb|CAG90750.2| DEHA2G16302p [Debaryomyces hansenii]
          Length = 786

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 70/238 (29%), Gaps = 58/238 (24%)

Query: 23  NKEEQLFFSFPRCLGISRDDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
            +E +L  +       S D+      LV         +I S         IL G  G GK
Sbjct: 187 KREAELPLAQRLRPK-SLDEYYGQEKLVGE-NGILKNIIKSDQ---IPSFILWGVPGVGK 241

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSI 133
           + LA I S  S            ++  +     +  ++   L    T LF    H  N  
Sbjct: 242 TSLARIISQTSNCKFLEVSGAEGNAKRLREVFTMA-DNERRLTGRKTILFLDEIHRFNKA 300

Query: 134 HQYDSSLLM-------------TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
            Q    LL+             T      +       L SR+       I  P    L++
Sbjct: 301 VQD---LLLPVIEKGIVTVIGATTENPSFTLNNA---LLSRM----HTFIMEP---LLKE 347

Query: 181 VIVKMFADRQI----------------FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            IVK+  +R +                 +DK    YI          A  +++ ++  
Sbjct: 348 DIVKII-NRGLLVVNKSRKLVFGLHLIALDKDAIDYIASLSAGDSRVALNILESINAY 404


>gi|190347392|gb|EDK39649.2| hypothetical protein PGUG_03747 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 572

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 62/185 (33%), Gaps = 38/185 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRK------------- 109
             +IL GP G GK+ LA+I + ++       S    ++ +I   + +             
Sbjct: 122 PSMILHGPPGVGKTTLASIIAKEAGYVMVELSATDATVSTIRRLSNEIRDENRKRTKLGT 181

Query: 110 -----PVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
                 V +++I                  +    + + A TF  +  +  P + SR   
Sbjct: 182 PHLRVCVFIDEIHRFSKVQQDFLLPF---VEEGLFVFLGATTFNPATRLR-PAIRSR--- 234

Query: 165 ATVVKISLPDDDFLEKVIVKMF-----ADR------QIFIDKKLAAYIVQRMERSLVFAE 213
             + K++    D ++ V+ K         R       +    ++  +I+   +     A 
Sbjct: 235 CQLFKLNELTKDEVKSVLKKAALYENVRRRIVYGKQFLSFSSEVLNHIINTCKGDARSAV 294

Query: 214 KLVDK 218
            +++ 
Sbjct: 295 NMIEM 299


>gi|154508553|ref|ZP_02044195.1| hypothetical protein ACTODO_01054 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798187|gb|EDN80607.1| hypothetical protein ACTODO_01054 [Actinomyces odontolyticus ATCC
           17982]
          Length = 678

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++ +  FS        + +      + E  +    N  
Sbjct: 210 RGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMELYVGVGASRVRELFERAKKNAP 269

Query: 125 QL 126
            +
Sbjct: 270 AI 271


>gi|330990588|ref|ZP_08314545.1| Insertion sequence IS5376 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329762290|gb|EGG78777.1| Insertion sequence IS5376 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
          Length = 243

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWS--------DKSRSTRFSNIAKSLDSILIDTRKPVLLE---D 115
           V+L+G  G+GK+ LA   +         K+R     ++  +L+      R   + +    
Sbjct: 89  VVLIGGPGTGKTHLATALAIQAITHHRKKARFWSTVDLVNALEQEKTANRAGQIADRLLR 148

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +DL+  ++             LFH+++ +++  +S+++T       WG
Sbjct: 149 LDLVILDELGYLPFSASGGALLFHLLSRLYER-TSVIITTNLSFSEWG 195


>gi|291568075|dbj|BAI90347.1| cell division control protein CDC48 homolog [Arthrospira platensis
           NIES-39]
          Length = 611

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA   + ++R+         L S  +   +  + E
Sbjct: 394 ILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRE 441



 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P+  V+LVGP G+GK+  A   +++      +               + L +I     K 
Sbjct: 124 PTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKN 183

Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID L  + +             L  +++   Q    +L+ A   P      
Sbjct: 184 APCIIFIDEIDSLAPDRSAVEGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPA 243

Query: 155 L 155
           L
Sbjct: 244 L 244


>gi|302659175|ref|XP_003021281.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517]
 gi|291185172|gb|EFE40663.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517]
          Length = 747

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++SR+   S
Sbjct: 523 VLLWGPPGCGKTLLAKAVANESRANFIS 550



 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L +  +  
Sbjct: 214 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 270


>gi|284054153|ref|ZP_06384363.1| AAA ATPase, central region [Arthrospira platensis str. Paraca]
          Length = 622

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA   + ++R+         L S  +   +  + E
Sbjct: 405 ILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRE 452



 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P+  V+LVGP G+GK+  A   +++      +               + L +I     K 
Sbjct: 135 PTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKN 194

Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID L  + +             L  +++   Q    +L+ A   P      
Sbjct: 195 APCIIFIDEIDSLAPDRSAVEGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPA 254

Query: 155 L 155
           L
Sbjct: 255 L 255


>gi|284031246|ref|YP_003381177.1| AFG1-family ATPase [Kribbella flavida DSM 17836]
 gi|283810539|gb|ADB32378.1| AFG1-family ATPase [Kribbella flavida DSM 17836]
          Length = 348

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 65  RVVILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLL 113
             + L G  G GK+  LA++W   S           +     +        +   + + +
Sbjct: 87  PGIYLDGGFGVGKTHLLASLWHVSSGPKMYCTFVELTNLVGALGMRSAVDALSAYRLICI 146

Query: 114 EDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
           ++ +L D  DT L   ++  + +    L  T+ T P   G
Sbjct: 147 DEFELDDPGDTVLISRLLRQLVEAGVQLAATSNTLPDKLG 186


>gi|301098998|ref|XP_002898591.1| cell division protease ftsH [Phytophthora infestans T30-4]
 gi|262105016|gb|EEY63068.1| cell division protease ftsH [Phytophthora infestans T30-4]
          Length = 435

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 22/95 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GPSG+GK+ LA   + ++        A     +L+                     
Sbjct: 209 VLLCGPSGTGKTLLARAVASEAGVAFLFCSASDFVEMLVGRGAARVRDLFTQASQYPQCI 268

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMT 143
           + +++ID L      L    NS  + + +L  L+T
Sbjct: 269 IFIDEIDALAKARGGL----NSNDEREQTLNQLLT 299


>gi|242036879|ref|XP_002465834.1| hypothetical protein SORBIDRAFT_01g046620 [Sorghum bicolor]
 gi|241919688|gb|EER92832.1| hypothetical protein SORBIDRAFT_01g046620 [Sorghum bicolor]
          Length = 763

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           P  V+ L+GPSGSGK+ L +I   ++ S          D   
Sbjct: 195 PGEVLALMGPSGSGKTTLLSILGGRAGSGAVEGSISYNDEPY 236


>gi|239609886|gb|EEQ86873.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ER-3]
          Length = 751

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 527 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 572



 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  D  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266


>gi|261195410|ref|XP_002624109.1| sister chromatid cohesion factor [Ajellomyces dermatitidis
           SLH14081]
 gi|239587981|gb|EEQ70624.1| sister chromatid cohesion factor [Ajellomyces dermatitidis
           SLH14081]
 gi|327349041|gb|EGE77898.1| sister chromatid cohesion factor [Ajellomyces dermatitidis ATCC
           18188]
          Length = 957

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +V++L GP G GK+ LA++ + ++        ++  +S D +    R  V  E++  +  
Sbjct: 270 KVLLLTGPPGLGKTTLAHVCARQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVSV 329

Query: 122 N 122
           +
Sbjct: 330 D 330


>gi|296803659|ref|XP_002842682.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480]
 gi|238846032|gb|EEQ35694.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480]
          Length = 743

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++SR+   S
Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546



 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L +  +  
Sbjct: 209 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 265


>gi|228976824|ref|ZP_04137237.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           Bt407]
 gi|228782920|gb|EEM31085.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           Bt407]
          Length = 582

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 147 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 206

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 207 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 266

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 267 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 317

Query: 212 AEKLVDKMDNLALSRGMG 229
           A  L + ++  AL     
Sbjct: 318 A-DLENLLNEAALVAARR 334


>gi|227548344|ref|ZP_03978393.1| ATP-binding protein [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079662|gb|EEI17625.1| ATP-binding protein [Corynebacterium lipophiloflavum DSM 44291]
          Length = 265

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 31/143 (21%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA---NIWSD 86
           F F     I R         E A     +W +    VV+L GP G+GK+ LA    I + 
Sbjct: 81  FDFTAQPSIDRT--------EIARLETGAWVATAENVVLL-GPPGTGKTHLATALGITAA 131

Query: 87  KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFNDTQ---LFH 128
           +       + A    + L +                   ++++++  +          F 
Sbjct: 132 QQGYRVLFDTAAGWINTLTEAHNTGKLETLLKRLNRYHLLIIDELGYIPVEADAANLFFQ 191

Query: 129 IINSIHQYDSSLLMTARTFPVSW 151
           +++  +++  S+++T+      W
Sbjct: 192 LVSRRYEHG-SIIVTSNLAFSQW 213


>gi|225557765|gb|EEH06050.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus G186AR]
          Length = 751

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 527 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 572



 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L E  D  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266


>gi|224051966|ref|XP_002200452.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 6
           [Taeniopygia guttata]
          Length = 360

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 137 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 188

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 189 ------MFNYARDHQ 197


>gi|209524864|ref|ZP_03273410.1| Vesicle-fusing ATPase [Arthrospira maxima CS-328]
 gi|209494743|gb|EDZ95052.1| Vesicle-fusing ATPase [Arthrospira maxima CS-328]
          Length = 610

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA   + ++R+         L S  +   +  + E
Sbjct: 393 ILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRE 440



 Score = 35.9 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P+  V+LVGP G+GK+  A   +++      +               + L +I     K 
Sbjct: 123 PTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKN 182

Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID L  N +             L  +++   Q    +L+ A   P      
Sbjct: 183 APCIIFIDEIDSLAPNRSAVEGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPA 242

Query: 155 L 155
           L
Sbjct: 243 L 243


>gi|254418268|ref|ZP_05031992.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
 gi|254418481|ref|ZP_05032205.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
 gi|196184445|gb|EDX79421.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
 gi|196184658|gb|EDX79634.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
          Length = 225

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 22/114 (19%)

Query: 65  RVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLD-------SILIDTRKPVL--LE 114
           R ++LVG +G+GK+ LA  I ++  R+        ++D          +     +   L 
Sbjct: 82  RNIVLVGGTGTGKTHLATAIIANVVRAGARGRYFNTVDLVNRLEEETRLGKAGALAAHLC 141

Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +D++  ++             LFH+I+ +++  +S+++T       W     D
Sbjct: 142 RLDVVVLDELGYLPFARSGGQLLFHLISKLYER-TSVIVTTNLAFGEWPTVFGD 194


>gi|190891389|ref|YP_001977931.1| ATPase [Rhizobium etli CIAT 652]
 gi|190696668|gb|ACE90753.1| putative ATPase protein [Rhizobium etli CIAT 652]
          Length = 438

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 69/188 (36%), Gaps = 31/188 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111
           R+I+   S     +I  GP G+GK+ +A + S ++     + S I   +  +        
Sbjct: 47  RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFETA- 102

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
               +  +D   T LF    H  N           +  + +L+  T              
Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215
           L SR   + V+     D+  LE+++ +  A  Q  + + ++  A +++  +        L
Sbjct: 157 LLSR---SRVLTFKSHDEQSLEELLKRAEAIEQKPLPLTEEARASLIRMADGDGRAVLTL 213

Query: 216 VDKMDNLA 223
            +++   A
Sbjct: 214 AEEVWRAA 221


>gi|125568968|gb|EAZ10483.1| hypothetical protein OsJ_00315 [Oryza sativa Japonica Group]
          Length = 433

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P R  +L GP G+GKS LA   + ++ ST FS                 +A        +
Sbjct: 162 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMAREN 221

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    H  D  L++ A   P +  
Sbjct: 222 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALD 281

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 282 QAVRRRFDKRIYIPLPDLKAR 302


>gi|119194249|ref|XP_001247728.1| hypothetical protein CIMG_01499 [Coccidioides immitis RS]
          Length = 535

 Score = 40.1 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 43/217 (19%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------N 95
                 LI++        +IL G +G+GK+ +A + +    S                  
Sbjct: 146 NGVLRGLIEADR---VPSMILWGGAGTGKTTIARVIATMVGSRFVEINSTSSGVAECKKI 202

Query: 96  IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            A++ + + +  RK ++  ++I     +   +F       +     L+ A T   S+ V 
Sbjct: 203 FAEARNELRLAGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 259

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERS 208
              L SR        +S   DD +  ++ +              +D++L  Y+    +  
Sbjct: 260 NA-LLSR---CRTFTLSKLTDDDIISILNRALELEGPNYSPTNLVDEELIRYLAAFAD-- 313

Query: 209 LVFAEKLVDKMDNLALSRGMG----------ITRSLA 235
              A   ++ ++                   +TR+L 
Sbjct: 314 -GDARTSLNLLELAMDLSKRPGMTKDELKKGLTRTLV 349


>gi|307110169|gb|EFN58405.1| hypothetical protein CHLNCDRAFT_140338 [Chlorella variabilis]
          Length = 881

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R  +L GP G GK+ LA   + +  +   S     L    +   +  +
Sbjct: 552 PPRGALLYGPPGCGKTLLAQAAASRCGANFLSVRGPELLQKWLGESEAAV 601



 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR 89
            +R V+L GP GSGK+ L    + ++R
Sbjct: 278 AARGVLLHGPPGSGKTHLVRALAAEAR 304


>gi|302503873|ref|XP_003013896.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371]
 gi|291177462|gb|EFE33256.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371]
          Length = 743

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++SR+   S
Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546



 Score = 36.3 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L +  +  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 266


>gi|262380591|ref|ZP_06073745.1| recombination factor protein RarA [Acinetobacter radioresistens
           SH164]
 gi|262298037|gb|EEY85952.1| recombination factor protein RarA [Acinetobacter radioresistens
           SH164]
          Length = 423

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 31/176 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSILIDTRKP----VLLED 115
             +I  GP G GK+ +A + +        S  A       L  I+ ++       V +++
Sbjct: 43  PSIIFWGPPGVGKTTIALLLAQAVDRPFISLSALNTGVKELREIIAESGDLLTPVVFIDE 102

Query: 116 IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           I   + +      ++N++ +     L+ A T   S+ V    L SR     V  +++ D 
Sbjct: 103 IHRFNKSQQD--ALLNAV-EKGKITLIGATTENPSFEVNGA-LLSR---CQVYTLNILDS 155

Query: 176 DFLEKVIVKMFA------DRQIFID--KKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           + ++ ++ K         +R I I+    L  +           A K ++ +D +A
Sbjct: 156 ESIQTLLDKALQTDEFLKERHIQIEEYDALIQFAA-------GDARKALNLLDLIA 204


>gi|237786214|ref|YP_002906919.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237759126|gb|ACR18376.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 910

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 65/198 (32%), Gaps = 43/198 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 207 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFTQAKENSP 266

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++        +L+ A   P     
Sbjct: 267 CIIFIDEIDAVGRQRGSGMGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDP 326

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       + ++ PD    E+++     ++ +  D  L   + +R    + 
Sbjct: 327 AL------LRPGRFDRQIPVTNPDLAGREQILRVHAKNKPLGPDVDL-NSLAKRTA-GMS 378

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  AL    
Sbjct: 379 GA-DLANVLNEAALLTAR 395


>gi|269957363|ref|YP_003327152.1| IstB domain-containing protein ATP-binding protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306044|gb|ACZ31594.1| IstB domain protein ATP-binding protein [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 256

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 31/144 (21%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-------- 81
           F+     G+ RD L   ++       +    +     VIL+GP G+GK+ LA        
Sbjct: 78  FNTTHQPGLRRDQLAHLAS----CAFVPKAEN-----VILLGPPGTGKTHLAIALGIKTI 128

Query: 82  -----NIWSDKSR-----STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFH 128
                 +++  +      +T  +      +   +   K ++++++  + F+       F 
Sbjct: 129 HAGNLALFNTATGWLDRLATAHAAGLLDAELRRLRRYKVLIIDEVGYIPFDHDAANLFFQ 188

Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152
           ++ +      SL++T+      WG
Sbjct: 189 LV-AARYEQGSLIITSNLPFGRWG 211


>gi|218288157|ref|ZP_03492456.1| type II secretion system protein E [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241516|gb|EED08689.1| type II secretion system protein E [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 554

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 21/88 (23%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAV-RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
            F   +    + D+L    A   A  R+I      P   V++ GP+GSGK+         
Sbjct: 276 IFDLAKR-AFNLDELGFSPANRAAFERMITK----PYGAVLITGPTGSGKT--------- 321

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED 115
                 S +  +L  +       + +ED
Sbjct: 322 ------STLYAALKRLATPAVNVITIED 343


>gi|195145516|ref|XP_002013738.1| GL23235 [Drosophila persimilis]
 gi|194102681|gb|EDW24724.1| GL23235 [Drosophila persimilis]
          Length = 386

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G GK+ LA   +  + +   S +        +     ++ +
Sbjct: 166 PPRGVLLYGPPGCGKTMLAKAVAHHTTANFISVVGSEFVQKYLGEGPRMVRD 217


>gi|195108917|ref|XP_001999039.1| GI23296 [Drosophila mojavensis]
 gi|193915633|gb|EDW14500.1| GI23296 [Drosophila mojavensis]
          Length = 393

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E
Sbjct: 170 PPKGCLLYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIRE 221


>gi|229186639|ref|ZP_04313800.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1]
 gi|118418782|gb|ABK87201.1| Recombination protein MgsA [Bacillus thuringiensis str. Al Hakam]
 gi|228596898|gb|EEK54557.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1]
          Length = 474

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 90  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 149

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 150 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 198

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 199 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 258

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 259 DDKAA-----EITLEIAEECLQK 276


>gi|114705175|ref|ZP_01438083.1| Proline-rich region:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
 gi|114539960|gb|EAU43080.1| Proline-rich region:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
          Length = 521

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSN-IAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            +++ G SGSGKS L     +KS        I    D + +  R   ++ D +    +  
Sbjct: 27  RLLVQGNSGSGKSHLLRRLLEKSAGWVQQAIIDPEGDFVTLADRYGHVVVDANRTPND-- 84

Query: 125 QLFHIINSIHQYDSSLLMT 143
            L  I N I Q+ +S+++T
Sbjct: 85  -LARIANRIRQHRASVVLT 102


>gi|63054416|ref|NP_587809.2| 19S proteasome regulatory subunit Rpt4 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|46397658|sp|O74445|PRS10_SCHPO RecName: Full=Probable 26S protease subunit rpt4
 gi|157310490|emb|CAA20682.2| 19S proteasome regulatory subunit Rpt4 (predicted)
           [Schizosaccharomyces pombe]
          Length = 388

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +          ++ ++    I     ++ E
Sbjct: 165 PPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIRE 216


>gi|332882226|ref|ZP_08449856.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679849|gb|EGJ52816.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 425

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 24/139 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSI------------LIDTRKP 110
             +I  GP G+GK+ LANI + +S       S I+  +  +            L  T+ P
Sbjct: 39  PSLIFWGPPGTGKTTLANIIAHQSNRAFYTLSAISSGIKEVREVIEQSKQSGGLFTTQNP 98

Query: 111 VL-LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           ++ +++I   +      L        +     L+ A T   S+ V +P L SR     V 
Sbjct: 99  IVFIDEIHRFNKTQQDSLL----QAVEKGWITLIGATTENPSFEV-IPALLSR---CQVY 150

Query: 169 KISLPDDDFLEKVIVKMFA 187
            ++  +   LE+++    A
Sbjct: 151 ILNAFERKDLEQLLQNAIA 169


>gi|326427214|gb|EGD72784.1| hypothetical protein PTSG_04511 [Salpingoeca sp. ATCC 50818]
          Length = 375

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 16/145 (11%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-LDSILIDTRKPVLLEDIDLLD- 120
           P + ++L GP G GK+ LA   + +      +    + +D    +++K  L+E I  L  
Sbjct: 118 PPKGLLLFGPPGCGKTLLARALAKECGCCFINVRPSTFMDKWFGESQK--LVEAIFTLAA 175

Query: 121 --------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
                    ++   F    S   ++SS ++ A+     W     D  SR+    V   + 
Sbjct: 176 KLQPSIIFIDEIDAFLRTRSSLDHESSAVIKAQFM-TLWDGFASDRTSRV--VVVAATNR 232

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL 197
           PDD     ++ ++     I +   +
Sbjct: 233 PDDVD-RAILRRLSRSCHIGLPDAV 256


>gi|325272460|ref|ZP_08138843.1| gluconokinase [Pseudomonas sp. TJI-51]
 gi|324102405|gb|EGB99868.1| gluconokinase [Pseudomonas sp. TJI-51]
          Length = 179

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P   ++++G +G GKSC+    + +S        A      +      + L+D D   +
Sbjct: 4   PLSAIVVMGVAGCGKSCIGAAIAARSGGRLIEGDAFHPAENIRKMSAGIPLDDADRAGW 62


>gi|312880609|ref|ZP_07740409.1| phosphoribulokinase/uridine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310783900|gb|EFQ24298.1| phosphoribulokinase/uridine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 547

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 22/124 (17%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A  + D       R+V L GPSGSGK+  A     + +      ++ SLD   +D   
Sbjct: 272 RMARAICDRP---SVRLVCLAGPSGSGKTTTARRLQIQLQVCGRHPVSISLDDYFVDRED 328

Query: 110 PV----------LLEDIDLLDFNDTQLFHIINSIHQYDSSL----LMTARTFP-VSWGVC 154
                        LE +DL   N+    H+   +   +  L     +T +  P     + 
Sbjct: 329 TPRDEKGDYDFEALEALDLKLINE----HLEALLAGEEVQLPKFDFVTGQRAPGKKLRLR 384

Query: 155 LPDL 158
             DL
Sbjct: 385 QGDL 388


>gi|308503911|ref|XP_003114139.1| CRE-RPT-1 protein [Caenorhabditis remanei]
 gi|308261524|gb|EFP05477.1| CRE-RPT-1 protein [Caenorhabditis remanei]
          Length = 435

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 270 KACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 330 DPALMRPGRLDRKVEFALPDLAGR 353


>gi|299753795|ref|XP_002911915.1| prsS7 [Coprinopsis cinerea okayama7#130]
 gi|298410465|gb|EFI28421.1| prsS7 [Coprinopsis cinerea okayama7#130]
          Length = 455

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 75/216 (34%), Gaps = 42/216 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++          
Sbjct: 230 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARSK 289

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
                  +++D +                  +  +IN +       +  ++ A   P + 
Sbjct: 290 KACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 349

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM--ERS 208
              L  L   RL     V+ SLPD+D    ++      R + +++ +   ++ R+    +
Sbjct: 350 DPAL--LRPGRLD--RRVEFSLPDNDGRAHILRIHA--RSMSVERDIRFDLIARLCPNTT 403

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 +  +    A+     +  +   + L   ++
Sbjct: 404 GAELRSVATEAGMFAIRARRKV--ATERDFLDAVEK 437


>gi|284166620|ref|YP_003404899.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
           5511]
 gi|284016275|gb|ADB62226.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
           5511]
          Length = 410

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I     ++ +  ++    
Sbjct: 185 PPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLFEMARER 244

Query: 123 DTQL 126
           +  +
Sbjct: 245 EPAI 248


>gi|254581002|ref|XP_002496486.1| ZYRO0D01210p [Zygosaccharomyces rouxii]
 gi|238939378|emb|CAR27553.1| ZYRO0D01210p [Zygosaccharomyces rouxii]
          Length = 427

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+  ++L GP G+GKS LA   + ++ ST FS
Sbjct: 156 PTSGILLYGPPGTGKSYLAKAVATEANSTFFS 187


>gi|228905862|ref|ZP_04069760.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 200]
 gi|228937368|ref|ZP_04100015.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228822326|gb|EEM68307.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228853802|gb|EEM98561.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           IBL 200]
          Length = 585

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 210 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 269

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 270 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 320

Query: 212 AEKLVDKMDNLALSRGMG 229
           A  L + ++  AL     
Sbjct: 321 A-DLENLLNEAALVAARR 337


>gi|258510315|ref|YP_003183749.1| type II secretion system protein E [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477041|gb|ACV57360.1| type II secretion system protein E [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 554

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 21/88 (23%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAV-RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
            F   +    + D+L    A   A  R+I      P   V++ GP+GSGK+         
Sbjct: 276 IFDLAKR-AFNLDELGFSPANRAAFERMITK----PYGAVLITGPTGSGKT--------- 321

Query: 88  SRSTRFSNIAKSLDSILIDTRKPVLLED 115
                 S +  +L  +       + +ED
Sbjct: 322 ------STLYAALKRLATPAVNVITIED 343


>gi|291294612|ref|YP_003506010.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
 gi|290469571|gb|ADD26990.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279]
          Length = 626

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP GSGK+ +A   + +++    +        + +      + +
Sbjct: 190 VLLVGPPGSGKTHIARAVAGEAKVPFIAASGSDFVEMFVGVGAARVRD 237


>gi|224078565|ref|XP_002305558.1| predicted protein [Populus trichocarpa]
 gi|222848522|gb|EEE86069.1| predicted protein [Populus trichocarpa]
          Length = 431

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R  +L GP G+GKS LA   + ++ ST FS
Sbjct: 160 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 191


>gi|219888017|gb|ACL54383.1| unknown [Zea mays]
 gi|223949273|gb|ACN28720.1| unknown [Zea mays]
 gi|238010334|gb|ACR36202.1| unknown [Zea mays]
          Length = 435

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R  +L GP G+GKS LA   + ++ ST FS
Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 195


>gi|251794362|ref|YP_003009093.1| ATPase AAA [Paenibacillus sp. JDR-2]
 gi|247541988|gb|ACS99006.1| AAA ATPase central domain protein [Paenibacillus sp. JDR-2]
          Length = 594

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 32  FPRCLGISRDDL-----LVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKSCL 80
            P   G + DD      +V +A    V L+     +        R ++L GP G+GKS L
Sbjct: 74  LPGETGATWDDYRGNPEIVENAKRI-VSLLRGVKDFKKMGGEAIRGLLLCGPPGTGKSYL 132

Query: 81  ANIWSDKSR 89
           A + +++++
Sbjct: 133 AQVIANEAQ 141


>gi|167630476|ref|YP_001680975.1| ATPase, putative [Heliobacterium modesticaldum Ice1]
 gi|167593216|gb|ABZ84964.1| ATPase, putative [Heliobacterium modesticaldum Ice1]
          Length = 441

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 32/175 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
            IL GP G+GK+ +A + +  + S   +  A + ++  I     V  E  + L FN  + 
Sbjct: 55  FILYGPPGTGKTTIARLIAQTTESPFVTLSAVTANTSDIKK---VAKEAEERLSFNQKRT 111

Query: 126 -LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D +L++   T              L SRL+   V  +
Sbjct: 112 ILFIDEIHRFNKAQQDLLLPIVEDGTLILIGATTENPLYELNAA---LLSRLR---VYLL 165

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDK 218
               ++ L  ++ +   D  R +      + ++  A IVQ  +     A  ++D 
Sbjct: 166 QPLKEEELLSLLKRALTDSERGLGLSGNALTEEALALIVQAAKGDARAALTILDM 220


>gi|163737147|ref|ZP_02144565.1| type I secretion system ATPase [Phaeobacter gallaeciensis BS107]
 gi|163740440|ref|ZP_02147834.1| type I secretion system ATPase [Phaeobacter gallaeciensis 2.10]
 gi|161386298|gb|EDQ10673.1| type I secretion system ATPase [Phaeobacter gallaeciensis 2.10]
 gi|161389751|gb|EDQ14102.1| type I secretion system ATPase [Phaeobacter gallaeciensis BS107]
          Length = 576

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           P + + ++GPSGSGKS LA      + + R +     LD   +D   P +L
Sbjct: 359 PGQAIGVIGPSGSGKSTLAR---ALTGAWRPAAGTVRLDGASLDQYAPEVL 406


>gi|163786201|ref|ZP_02180649.1| ATPase, AAA family protein [Flavobacteriales bacterium ALC-1]
 gi|159878061|gb|EDP72117.1| ATPase, AAA family protein [Flavobacteriales bacterium ALC-1]
          Length = 425

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 24/140 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +IL GP G GK+ LANI +++S                     + AK    +      
Sbjct: 40  PSLILWGPPGIGKTTLANIIANESERPFFKLSAINSGVKDIREVIDKAKKSGGLFTAKNP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L        +     L+ A T   S+ V    L SR     V 
Sbjct: 100 ILFIDEIHRFSKSQQDSLL----EAVEKGWVTLIGATTENPSFEVISA-LLSR---CQVY 151

Query: 169 KISLPDDDFLEKVIVKMFAD 188
            ++      LE ++ +   +
Sbjct: 152 TLNAFSKADLEALLQRAIKE 171


>gi|169849566|ref|XP_001831486.1| ATPase [Coprinopsis cinerea okayama7#130]
 gi|116507438|gb|EAU90333.1| ATPase [Coprinopsis cinerea okayama7#130]
          Length = 396

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 36/152 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     V+          
Sbjct: 174 PPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYAREH 233

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID +                  L  ++N          + L+ A   P + 
Sbjct: 234 EPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGRTKLIMATNRPDTL 293

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVI 182
              L  L   RL     ++I LP++    +++
Sbjct: 294 DPAL--LRPGRLD--RKIEIPLPNEQARLEIL 321


>gi|34557255|ref|NP_907070.1| cell division cycle protein 48-related protein [Wolinella
           succinogenes DSM 1740]
 gi|34482971|emb|CAE09970.1| CELL DIVISION CYCLE PROTEIN 48-RELATED PROTEIN [Wolinella
           succinogenes]
          Length = 319

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
               ++L GP G GKS  A   + +  +T F+     +  +               +  +
Sbjct: 63  AGGGILLYGPPGCGKSYFARAIAGECGATFFNVGIDQILDMY--------------VGNS 108

Query: 123 DTQLFHIINSIHQYDSSLLM 142
           +  L H+  S      ++L 
Sbjct: 109 EKNLKHLFQSARNVKPAILF 128


>gi|320536058|ref|ZP_08036116.1| phage putative tail component protein [Treponema phagedenis F0421]
 gi|320147108|gb|EFW38666.1| phage putative tail component protein [Treponema phagedenis F0421]
          Length = 678

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 51/205 (24%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    F         + +                   
Sbjct: 239 RGVLLVGPPGTGKTLLARAVAGEAGVPFFRISGSDFVEMFVGVGASRVRDLFKQAREKAP 298

Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQYDSSL-----------------LMTARTFPVSW 151
             + ++++D +  +     + INS  + + +L                 L+ A   P   
Sbjct: 299 CIIFIDELDAIGKSRI---NSINSNDEREQTLNQLLVEMDGFDNTTGLILLAATNRPDVL 355

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+       V +  PD    E ++     +  + +   +    V R+   
Sbjct: 356 DPAL------LRPGRFDRQVVVDRPDVKGREAILKIHAKN--VKLSPDVDLKAVARITGG 407

Query: 209 LVFAEKLVDKMDNLAL---SRGMGI 230
              A  L + ++  AL     G  +
Sbjct: 408 YSGA-DLANVINEAALLAVRSGRKV 431


>gi|330925922|ref|XP_003301253.1| hypothetical protein PTT_12704 [Pyrenophora teres f. teres 0-1]
 gi|311324199|gb|EFQ90653.1| hypothetical protein PTT_12704 [Pyrenophora teres f. teres 0-1]
          Length = 535

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 23/193 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++L G  G+GK+ +A + ++ S S      + S     +        +D+  L    T
Sbjct: 154 PSMVLWGRPGTGKTTIARLIANTSGSRFVEINSTSTRLEQVRAIFAEASQDL-RLTGRKT 212

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  +           +  +  L+ A T   S+ +    L SR        +  
Sbjct: 213 IVFCDELHRFSKTQQDAFLGPVESGTITLIAATTENPSFKIISA-LLSR---CRTFTLDD 268

Query: 173 PDDDFLEKVIVKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVD---KMDNLALSR 226
             +D L +++ +  A        +DK + AY  +  +     A  L++    + N A   
Sbjct: 269 LKEDDLVQILERAMAAENCTSPILDKSMLAYFARFSDGDARTALNLLELAMSLANQADMT 328

Query: 227 GMGITRSLAAEVL 239
              I +SL   ++
Sbjct: 329 KEKIQQSLTKTLV 341


>gi|308272185|emb|CBX28792.1| Cell division cycle protein 48 homolog AF_1297 [uncultured
           Desulfobacterium sp.]
          Length = 711

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 37/162 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G GK+ +A   + ++ +  FS                ++ K  +         
Sbjct: 218 VLLYGPPGCGKTLIARAIAHETEANFFSISGPEIIHKFYGESEAHLRKIFEEATRKGPSI 277

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           + L++ID +                 QL  +++ +++  + +++ A   P +     P L
Sbjct: 278 LFLDEIDAIAPRRENVVGDVEKRVVAQLLALMDGLNKRQNVIVIAATNIPNALD---PAL 334

Query: 159 C--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
               R     V+ I  PD     +++      R + + K + 
Sbjct: 335 RRPGRFDREIVIPI--PDRRGRLEILE--IHSRGMPLAKDVL 372


>gi|301610192|ref|XP_002934633.1| PREDICTED: peroxisome biogenesis factor 1 [Xenopus (Silurana)
           tropicalis]
          Length = 1205

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 20/78 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRST--------------------RFSNIAKSLDSI 103
           S  V+L GP GSGKS LA     ++                           + ++ +  
Sbjct: 585 SGGVLLCGPKGSGKSTLAKALCKEASEQLEAHVEEIDCKLLKGKNVENIIQTLEEAFEEA 644

Query: 104 LIDTRKPVLLEDIDLLDF 121
                  +LL+D+D +  
Sbjct: 645 AWRQPSVILLDDLDQIAG 662


>gi|300711240|ref|YP_003737054.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
 gi|299124923|gb|ADJ15262.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
          Length = 701

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            L +   + P   V+L GP G+GK+ LA   + +S           L    +   +  +
Sbjct: 470 ELFEKTATEPPSGVLLYGPPGTGKTLLARAIASESGVNFIHVAGPELLDRYVGESEKAV 528


>gi|296333157|ref|ZP_06875610.1| recombination factor protein RarA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675337|ref|YP_003867009.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296149355|gb|EFG90251.1| recombination factor protein RarA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413581|gb|ADM38700.1| putative helicase associated protein (ATPase, AAA family) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 421

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  +        +      ++        +  +  ++L+++ 
Sbjct: 41  MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD              +    +L+ A T      +  P + SR     + ++     + 
Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPEL 153

Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
           +++ + +   D  R +      ID +   +               ++ ++   LS     
Sbjct: 154 IKQALERAIHDEHRGLGTYSVSIDDQAMEHFAHGCG---GDVRSALNALELAVLSTKESA 210

Query: 230 -----ITRSLAAEVLKE 241
                IT   A E L++
Sbjct: 211 DGVIHITLETAEECLQK 227


>gi|289432492|ref|YP_003462365.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. GT]
 gi|288946212|gb|ADC73909.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. GT]
          Length = 362

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR----FSNIAKSLDSILIDTR----KPVLLEDIDL 118
           V+L GP G GK+ L++I + +            I +  D   I T       + +++I  
Sbjct: 72  VLLYGPPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHR 131

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD----------------LCSR 161
           L  N  ++ +      +  +  +M  +     S  + LP                 L  R
Sbjct: 132 LSRNVEEVLYP---AMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDR 188

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
             +  + ++   D++ +  ++ +      +  D+     I  R   +   A +L+ ++ +
Sbjct: 189 FGS--IFRLDFYDEEAIHDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRD 246

Query: 222 LALSRGMG-ITRSLAAEVLK 240
            A  +G G IT  +AAE L 
Sbjct: 247 YAQVKGNGLITADIAAESLA 266


>gi|228963166|ref|ZP_04124336.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796551|gb|EEM43989.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 585

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 210 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 269

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 270 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 320

Query: 212 AEKLVDKMDNLALSRGMG 229
           A  L + ++  AL     
Sbjct: 321 A-DLENLLNEAALVAARR 337


>gi|224826932|ref|ZP_03700031.1| AAA ATPase central domain protein [Lutiella nitroferrum 2002]
 gi|224600919|gb|EEG07103.1| AAA ATPase central domain protein [Lutiella nitroferrum 2002]
          Length = 439

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 25/191 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ LA I +    +      A     K +   +   +  +  +    + F
Sbjct: 50  MILWGPPGVGKTTLARILAHSFDAEFIPLSAVFSGVKDIREAVDRAQAVLQRDGRHTILF 109

Query: 122 NDTQLFHIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            D    H  N   Q D+ L      L+T   A T   S+ V    L SR   A V  ++ 
Sbjct: 110 VDEV--HRFNKSQQ-DAFLPYVESGLLTFIGATTENPSFEVNSA-LLSR---AQVYVLNA 162

Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
             DD  + +  +  A      +  D    A +    +        L+++    A +R + 
Sbjct: 163 LADDDFKALFARAVASGALPGLTFDDSALATLSGYADGDARRFLNLLEQTRTAASARHVE 222

Query: 230 -ITRSLAAEVL 239
            I     AEVL
Sbjct: 223 HIDADFLAEVL 233


>gi|158321332|ref|YP_001513839.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
 gi|158141531|gb|ABW19843.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs]
          Length = 623

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 46/141 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 201 ALLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCI 260

Query: 111 VLLEDIDL----------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
           V +++ID           +  ND       QL   ++        +++ A   P S    
Sbjct: 261 VFIDEIDTIGKKRDNGSGIGGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDKA 320

Query: 152 -----------GVCLPDLCSR 161
                       V LPDL  R
Sbjct: 321 LLRPGRFDRRIPVELPDLAGR 341


>gi|145296692|ref|YP_001139513.1| hypothetical protein cgR_2597 [Corynebacterium glutamicum R]
 gi|140846612|dbj|BAF55611.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 853

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 49/206 (23%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 199 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSP 258

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFP----- 148
             + +++ID +            D  +  L  +   ++        +LM A   P     
Sbjct: 259 CIIFVDEIDAVGRARGSGMGGGHDEREQTLNQLLVEMDGFGDRQGVILMAATNRPDVLDP 318

Query: 149 ---------VSWGVCLPDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197
                        V  PDL  R +   V     P   D  ++ +  +        +   L
Sbjct: 319 ALLRPGRFDRQIPVTNPDLRGREQILEVHAKGKPFALDADIKALAKRTAGMSGADLANVL 378

Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221
             AA +  R+  +++ A+ L +  D 
Sbjct: 379 NEAALLTARVGGNVITADALEEATDR 404


>gi|125524360|gb|EAY72474.1| hypothetical protein OsI_00329 [Oryza sativa Indica Group]
          Length = 433

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P R  +L GP G+GKS LA   + ++ ST FS                 +A        +
Sbjct: 162 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMAREN 221

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    H  D  L++ A   P +  
Sbjct: 222 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALD 281

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 282 QAVRRRFDKRIYIPLPDLKAR 302


>gi|94499677|ref|ZP_01306214.1| hypothetical protein RED65_01550 [Oceanobacter sp. RED65]
 gi|94428431|gb|EAT13404.1| hypothetical protein RED65_01550 [Oceanobacter sp. RED65]
          Length = 443

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 35/179 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G GK+ LA I ++   +     S +   +  I     K  + +  D       
Sbjct: 52  MIFWGPPGVGKTTLAMILANYVNAQFISVSAVMDGVKEIRAAVDKARMAQQQDRPSL--- 108

Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N           +  + + +  T              L SR   A V K+
Sbjct: 109 -LFVDEVHRFNKSQQDAFLPYVEDGTFIFIGATTENPSFELNSA---LLSR---ARVYKL 161

Query: 171 SLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + D + +++       Q      +  +      +V+  +     A   ++ ++  A
Sbjct: 162 RSLEHDDIRQLLEHAVRTDQQLNSIGLQFENGALDRLVRVAD---GDARTALNLLELAA 217


>gi|113475969|ref|YP_722030.1| vesicle-fusing ATPase [Trichodesmium erythraeum IMS101]
 gi|110167017|gb|ABG51557.1| Vesicle-fusing ATPase [Trichodesmium erythraeum IMS101]
          Length = 639

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 39/156 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112
           ++L G  G+GK+ LA   + ++++   +     L S  +   +  +              
Sbjct: 411 ILLWGEPGTGKTLLAKAVASQAQANFIAVNGPELLSKWVGAAEEAVRELFSKARQVSPCV 470

Query: 113 --LEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             +++ID L                   QL   ++ +      LL+ A   P +    L 
Sbjct: 471 IFIDEIDTLAPARGKTMGDSGVSDRLVGQLLTELDGLRDCTQLLLVGATNRPDALDPAL- 529

Query: 157 DLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADR 189
                L+A      +K+ LPD     +++     DR
Sbjct: 530 -----LRAGRLDLQIKVDLPDQASRLEILKVHNQDR 560



 Score = 37.4 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           PSR V+LVGP G+GK+  A   +++      +                 L  I    +K 
Sbjct: 138 PSRGVLLVGPPGTGKTLTAKAIAEELGLNYIAINGPEVMSKYYGEAEGKLRDIFAKAKKS 197

Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +  +              QL  +++     +  LL+ A   P      
Sbjct: 198 APCLIFIDEIDSIAPDRSKVEGEVEKRLVAQLLGLMDGFEVLEGVLLLAATNRPDHIDPA 257

Query: 155 L 155
           L
Sbjct: 258 L 258


>gi|327286230|ref|XP_003227834.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
           [Anolis carolinensis]
          Length = 382

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 159 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 210

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 211 ------MFNYARDHQ 219


>gi|308322419|gb|ADO28347.1| 26S protease regulatory subunit s10b [Ictalurus furcatus]
          Length = 389

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|297297857|ref|XP_001099493.2| PREDICTED: 26S protease regulatory subunit S10B-like, partial
           [Macaca mulatta]
          Length = 352

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 232 ------MFNYARDHQ 240


>gi|255081266|ref|XP_002507855.1| predicted protein [Micromonas sp. RCC299]
 gi|226523131|gb|ACO69113.1| predicted protein [Micromonas sp. RCC299]
          Length = 412

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ +A   + ++ +         L  + I     ++ +
Sbjct: 196 VLLYGPPGTGKTLIARACAAQTNAAYLKLAGPLLVQMFIGDGAKLVRD 243


>gi|219888287|gb|ACL54518.1| unknown [Zea mays]
          Length = 435

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P R  +L GP G+GKS LA   + ++ ST FS                 +A        +
Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMAREN 223

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    H  D  L++ A   P +  
Sbjct: 224 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALD 283

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 284 QAVRRRFDKRIYIPLPDLKAR 304


>gi|168017225|ref|XP_001761148.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
           patens subsp. patens]
 gi|162687488|gb|EDQ73870.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
           patens subsp. patens]
          Length = 392

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 165 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIRE 216


>gi|146162295|ref|XP_001009196.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila]
 gi|146146457|gb|EAR88951.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila
           SB210]
          Length = 395

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 175 VLLYGPPGTGKTLLARAIAHHTDCTFIRVSGSELVQKYIGEGARMVRE 222


>gi|145532457|ref|XP_001451984.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419661|emb|CAK84587.1| unnamed protein product [Paramecium tetraurelia]
          Length = 393

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 173 VLLYGPPGTGKTLLARAIAHHTDCTFIRVSGSELVQKYIGEGARMVRE 220


>gi|145531483|ref|XP_001451508.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419163|emb|CAK84111.1| unnamed protein product [Paramecium tetraurelia]
          Length = 393

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 173 VLLYGPPGTGKTLLARAIAHHTDCTFIRVSGSELVQKYIGEGARMVRE 220


>gi|145486497|ref|XP_001429255.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396346|emb|CAK61857.1| unnamed protein product [Paramecium tetraurelia]
          Length = 393

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 173 VLLYGPPGTGKTLLARAIAHHTDCTFIRVSGSELVQKYIGEGARMVRE 220


>gi|118490708|ref|XP_001238663.1| atp-dependent metalloprotease ftsh, putative [Eimeria tenella]
 gi|109238446|emb|CAK51410.1| atp-dependent metalloprotease ftsh, putative [Eimeria tenella]
          Length = 296

 Score = 40.1 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 14/76 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G+GK+ LA   + ++            + + +      +             L
Sbjct: 99  ILLHGPPGTGKTLLARAIAGEAGVPFLHASGSDFEEMFVGVGASRI-----------RSL 147

Query: 127 FHIINSIHQYDSSLLM 142
           F    +       LL 
Sbjct: 148 FA---AARAKGRCLLF 160


>gi|330880369|gb|EGH14518.1| transposase/IS protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 243

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 25/114 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------------T 107
           ++ +GPSG GKS LA   + ++          +   +++                     
Sbjct: 104 IVFLGPSGVGKSHLAIALAYRAVMAGIKTRFVTAADLMLQLTAAHRQERLKEYFSRVVMA 163

Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVSWGVCLPD 157
              +++++I  L F  ++  LF   N +       SL++T+      W     D
Sbjct: 164 PGLLVIDEIGYLPFGRDEANLF--FNVVAKRYEQGSLILTSNLPFTQWAGTFAD 215


>gi|313887624|ref|ZP_07821306.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846233|gb|EFR33612.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 611

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 43/196 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 200 ALLVGPPGTGKTLLARAVAGESHVPFFSIAGSEFVEMFVGRGAAKVRELFDEAKKNAPCI 259

Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 260 IFIDEIDTIGKKRDSAGISGNDEREQTLNQLLTEMDGFDGNIGIVMLAATNRPEILDPAL 319

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA-- 212
             L   R      V++    D      I+K+ A R   ++     Y +  + RS   A  
Sbjct: 320 --LRPGRFDRQIRVELPTLKD---RIEILKVHA-RSYKMEDD-IDYSL--IARSTAGASG 370

Query: 213 EKLVDKMDNLALSRGM 228
            +L + ++  AL    
Sbjct: 371 AQLANILNEAALRAVR 386


>gi|291296065|ref|YP_003507463.1| putative adenylate/guanylate cyclase [Meiothermus ruber DSM 1279]
 gi|290471024|gb|ADD28443.1| putative adenylate/guanylate cyclase [Meiothermus ruber DSM 1279]
          Length = 1071

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLAN 82
           R +++  +   R ++L GP G GKS LA 
Sbjct: 222 RALEAVQAGAGRRLVLYGPMGVGKSHLAR 250


>gi|290474662|ref|YP_003467542.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii
           SS-2004]
 gi|289173975|emb|CBJ80762.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii
           SS-2004]
          Length = 423

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+    VP ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKELVPHRERSALPT----------PHEIRQHLDDYVIGQETAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R+ ++  ++      T
Sbjct: 96  YKRLRNGDTNNGVELGKSNILLIGPTGSGKTLLAETLA------RYLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|259503655|ref|ZP_05746557.1| AAA family ATPase [Lactobacillus antri DSM 16041]
 gi|259168374|gb|EEW52869.1| AAA family ATPase [Lactobacillus antri DSM 16041]
          Length = 433

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +  +R    + +    S   + I   +        +LL++I 
Sbjct: 41  MILYGPPGTGKTSIASAIAGSTRYAFRKLNAATDSKKDLQIVAEEAKMSGTVILLLDEIH 100

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L     D  L H+     +    +L+ A T      +  P + SR     +  +     
Sbjct: 101 RLDKAKQDFLLPHL-----ESGRIVLIGATTENPYISIN-PAIRSR---TQIFPVHPLSI 151

Query: 176 DFLEKVIVKMFAD--RQI 191
           D ++  I +   D  R +
Sbjct: 152 DDIKVAIARALTDKERGL 169


>gi|251773179|gb|EES53732.1| AAA ATPase [Leptospirillum ferrodiazotrophum]
          Length = 451

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 28/145 (19%)

Query: 62  WPSRVVILVGPSGSGKS------------C-LANIWSDKSR-STRFSNIAKSLDSILIDT 107
           WPS  ++L GP G+GKS               A++ +  +  +     +A+         
Sbjct: 49  WPS--MVLFGPPGTGKSGFVELLPRLLSDHTFAHLNATTAGVADLRPELARGERRRREGG 106

Query: 108 RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
           +  V+L++I     +  ++  +++ +      LL  + T P  +   +P L SRL    +
Sbjct: 107 QHVVVLDEIHTWSKSQQEV--LLSGVETGQIILLGLSNTTP--YAALIPPLASRL---LL 159

Query: 168 VKISLPDDDFLEKVIVKMFADRQIF 192
                 D++ L  ++     DR + 
Sbjct: 160 FPFQPLDENALSTLL-----DRGLH 179


>gi|255545124|ref|XP_002513623.1| ATP binding protein, putative [Ricinus communis]
 gi|223547531|gb|EEF49026.1| ATP binding protein, putative [Ricinus communis]
          Length = 835

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 556 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 587


>gi|194865492|ref|XP_001971456.1| GG14421 [Drosophila erecta]
 gi|190653239|gb|EDV50482.1| GG14421 [Drosophila erecta]
          Length = 935

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA   S +
Sbjct: 279 PSRGLLLHGPPGCGKTFLARAISGQ 303



 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 687 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 735


>gi|168003543|ref|XP_001754472.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
           patens subsp. patens]
 gi|162694574|gb|EDQ80922.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
           patens subsp. patens]
          Length = 392

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 165 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIRE 216


>gi|168029577|ref|XP_001767302.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
           patens subsp. patens]
 gi|162681557|gb|EDQ67983.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
           patens subsp. patens]
          Length = 392

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 165 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIRE 216


>gi|115816457|ref|XP_801708.2| PREDICTED: similar to Valosin containing protein isoform 2, partial
           [Strongylocentrotus purpuratus]
 gi|115970724|ref|XP_001186005.1| PREDICTED: similar to Valosin containing protein, partial
           [Strongylocentrotus purpuratus]
          Length = 537

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 239 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 295


>gi|169597869|ref|XP_001792358.1| hypothetical protein SNOG_01726 [Phaeosphaeria nodorum SN15]
 gi|111070255|gb|EAT91375.1| hypothetical protein SNOG_01726 [Phaeosphaeria nodorum SN15]
          Length = 524

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKSCLAN--IWSDKSRSTRFSNIAKSLDSILIDT 107
              ID  P   + V+ L G  GSGK+ LA   +   + R+           S  I  
Sbjct: 272 CSWIDRSPG-SNPVLWLQGIPGSGKTHLAATVVHEARKRAHSLFAFLTYTHSTNISA 327


>gi|18447485|gb|AAL68305.1| RE47719p [Drosophila melanogaster]
          Length = 501

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA   S +
Sbjct: 282 PSRGLLLHGPPGCGKTFLARAISGQ 306


>gi|328849304|gb|EGF98487.1| ATP-dependent 26S proteasome regulatory subunit [Melampsora
           larici-populina 98AG31]
          Length = 480

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 44/181 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +T    I   L    +     ++          
Sbjct: 249 PPKGVMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 308

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---------IHQYDSSLLMTAR 145
                  ++ID +                  +  +IN          I   +S +L+ A 
Sbjct: 309 KACIIFFDEIDAIGGARHDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVVESLVLIMAT 368

Query: 146 TFPVSWGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
             P +    L  L   RL     V+ SLPD +    ++      R + +++ +   ++ R
Sbjct: 369 NRPDTLDPAL--LRPGRLD--RRVEFSLPDTEGRANILKIHA--RSMSVERNIRYELIAR 422

Query: 205 M 205
           +
Sbjct: 423 L 423


>gi|302781947|ref|XP_002972747.1| hypothetical protein SELMODRAFT_173081 [Selaginella moellendorffii]
 gi|300159348|gb|EFJ25968.1| hypothetical protein SELMODRAFT_173081 [Selaginella moellendorffii]
          Length = 547

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           W SR ++L GP G+GK+ L    +++  +   S  A S+        + VL +
Sbjct: 41  W-SRGLLLHGPPGTGKTTLVRAIAEECNAHLISLSAGSVHKAYAGESERVLRD 92


>gi|302823417|ref|XP_002993361.1| hypothetical protein SELMODRAFT_137043 [Selaginella moellendorffii]
 gi|300138792|gb|EFJ05546.1| hypothetical protein SELMODRAFT_137043 [Selaginella moellendorffii]
          Length = 547

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           W SR ++L GP G+GK+ L    +++  +   S  A S+        + VL +
Sbjct: 41  W-SRGLLLHGPPGTGKTTLVRAIAEECNAHLISLSAGSVHKAYAGESERVLRD 92


>gi|259416571|ref|ZP_05740491.1| recombination factor protein RarA [Silicibacter sp. TrichCH4B]
 gi|259348010|gb|EEW59787.1| recombination factor protein RarA [Silicibacter sp. TrichCH4B]
          Length = 443

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G GK+ +A + + ++     + S I   +  +            I 
Sbjct: 56  ASGSLSSLIFWGPPGVGKTTIARLLAQETDLHFVQISAIFTGVPDLKKVFEAA----KIR 111

Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163
             +   T LF    H  N   Q          ++L+   T           +    SR +
Sbjct: 112 RQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAV---LSRSQ 168

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              + ++SL D + L +   K    R + +  +    + Q  +        L++++   A
Sbjct: 169 VLVLERLSLADLERLTQRAEKALERR-LPLLPEARDALHQMADGDGRALLNLIEQV--AA 225

Query: 224 LSRGMGITR-SLAAEVLKETQQCD 246
                 + R +LA  +++   + D
Sbjct: 226 WKVDQPLGREALATRLMRRAAKYD 249


>gi|255710811|ref|XP_002551689.1| KLTH0A05324p [Lachancea thermotolerans]
 gi|238933066|emb|CAR21247.1| KLTH0A05324p [Lachancea thermotolerans]
          Length = 832

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 50/166 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 247 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366

Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181
                       + +PD   RL+   V++I      L DD  LE +
Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEVL 409



 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PS+ V+  GP G+GK+ LA   + +  +                   SNI    D     
Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579

Query: 107 TRKPVLLEDIDLLD 120
               V L+++D + 
Sbjct: 580 APTVVFLDELDSIA 593


>gi|222623676|gb|EEE57808.1| hypothetical protein OsJ_08386 [Oryza sativa Japonica Group]
          Length = 1167

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 43/144 (29%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
            P + V+L GP G+GK+ LA   + ++ +   S    +L S                    
Sbjct: 910  PCKGVLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRL 969

Query: 109  KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144
             PV++  +++D L       F H     + N            +    L++ A       
Sbjct: 970  APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKESQRILILGATNRPFDL 1029

Query: 145  -----RTFPVSWGVCLPDLCSRLK 163
                 R  P    V LPD  +R+K
Sbjct: 1030 DDAVIRRLPRRIYVDLPDAQNRMK 1053


>gi|218190265|gb|EEC72692.1| hypothetical protein OsI_06267 [Oryza sativa Indica Group]
          Length = 400

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++          
Sbjct: 173 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 232

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID +                  L  ++N      +     ++ A   P   
Sbjct: 233 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 292

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L   RL     ++I LP++    +V+    A             I +  E    
Sbjct: 293 DPAL--LRPGRLD--RKIEIPLPNEQARMEVLKIHAAG------------IAKHGEIDYE 336

Query: 211 FAEKLVDKMDNLALSR 226
              KL +  +   L  
Sbjct: 337 AVVKLAEGFNGADLRN 352


>gi|206588863|emb|CAQ35825.1| probable transposase protein [Ralstonia solanacearum MolK2]
          Length = 751

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 582 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 636

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 637 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 694

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 695 FTQWATAFAD 704


>gi|226531095|ref|NP_001141554.1| hypothetical protein LOC100273669 [Zea mays]
 gi|194705054|gb|ACF86611.1| unknown [Zea mays]
          Length = 260

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 119 PQKGVLLYGPPGTGKTMLAKAIARESGAVFIN 150


>gi|167519841|ref|XP_001744260.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777346|gb|EDQ90963.1| predicted protein [Monosiga brevicollis MX1]
          Length = 410

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL GP G+GK+ LA   ++++ +T    +   L          ++ E
Sbjct: 189 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYSGEGPKLVRE 240


>gi|115642732|ref|XP_001184600.1| PREDICTED: similar to fidgetin-like 1, partial [Strongylocentrotus
           purpuratus]
 gi|115661295|ref|XP_001196555.1| PREDICTED: similar to fidgetin-like 1, partial [Strongylocentrotus
           purpuratus]
          Length = 221

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDS---WP----------SWPSRVVILVGPSGSGKSCL 80
               I  DD+   + +E A + I     WP            P + ++L GP G+GK+ +
Sbjct: 49  HGPPIHWDDI---AGLEFAKKTIKEIVVWPMLRPDIFTGLRGPPKGLLLFGPPGTGKTLI 105

Query: 81  ANIWSDKSRSTRFSNIAKSLDS 102
               + +S +T FS  A SL S
Sbjct: 106 GKCIASQSGATFFSISASSLTS 127


>gi|84489998|ref|YP_448230.1| proteasome-activating nucleotidase [Methanosphaera stadtmanae DSM
           3091]
 gi|84373317|gb|ABC57587.1| proteasome-activating nucleotidase [Methanosphaera stadtmanae DSM
           3091]
          Length = 406

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + V+  GP G+GK+ LA   + ++ +T    +A       I     ++
Sbjct: 182 PPKGVLFYGPPGTGKTLLAKAVAHETNATFIKIVASEFVKKYIGEGSRLV 231


>gi|30249052|ref|NP_841122.1| recombination factor protein RarA [Nitrosomonas europaea ATCC
           19718]
 gi|30138669|emb|CAD84964.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [Nitrosomonas europaea ATCC
           19718]
          Length = 439

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 27/175 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFND 123
           +IL GP GSGK+ LA + +    +   +  A       I       +E            
Sbjct: 52  MILWGPPGSGKTTLARLMAHAFDAEFIAISAVLSGVKDIRE----AIERAQITLQRTGRA 107

Query: 124 TQLF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKI 170
           T LF    H  N   Q D+ L      L+T   A T   S+ V    L SR   A V  +
Sbjct: 108 TLLFVDEVHRFNKAQQ-DAFLPHVEQGLITFIGATTENPSFEVNGA-LLSR---AQVYAL 162

Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKK--LAAYIVQRMERSLVFAEKLVDKMDNLA 223
               D  L ++  +  +   + ++ +      ++   +        L++++ N A
Sbjct: 163 KALTDQELHQLFERARSIAMLDLEFENTAIELLIGFADGDARRLLNLLEQVQNAA 217


>gi|115444877|ref|NP_001046218.1| Os02g0199900 [Oryza sativa Japonica Group]
 gi|11094192|dbj|BAB17625.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
           sativa Japonica Group]
 gi|46390379|dbj|BAD15843.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
           sativa Japonica Group]
 gi|49388371|dbj|BAD25481.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
           sativa Japonica Group]
 gi|113535749|dbj|BAF08132.1| Os02g0199900 [Oryza sativa Japonica Group]
 gi|125581193|gb|EAZ22124.1| hypothetical protein OsJ_05786 [Oryza sativa Japonica Group]
          Length = 400

 Score = 40.1 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++          
Sbjct: 173 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 232

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID +                  L  ++N      +     ++ A   P   
Sbjct: 233 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 292

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L   RL     ++I LP++    +V+    A             I +  E    
Sbjct: 293 DPAL--LRPGRLD--RKIEIPLPNEQARMEVLKIHAAG------------IAKHGEIDYE 336

Query: 211 FAEKLVDKMDNLALSR 226
              KL +  +   L  
Sbjct: 337 AVVKLAEGFNGADLRN 352


>gi|327302246|ref|XP_003235815.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
 gi|326461157|gb|EGD86610.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
          Length = 743

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++SR+   S
Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546



 Score = 36.3 bits (83), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R V+L GP G GK+ +AN ++ +      +  A S+
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247


>gi|307266569|ref|ZP_07548101.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918423|gb|EFN48665.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 338

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 43/201 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA + S++           +++           L++ D+L  +
Sbjct: 51  PLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFID 110

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPD 174
           +    H +N   +    +L      P      L       P   S RL       I    
Sbjct: 111 EI---HRLNRSVEE---ILY-----PAMEDFELDIVIGKGPSARSIRLSLPRFTLIGA-- 157

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDK--------MDNLA-- 223
                 ++     DR   I          R++  S+   ++++ +        +D  A  
Sbjct: 158 -TTRAALMTSPLRDRFGVI---------NRLDYYSVEELKEIIKRSANILNIGIDEDAAF 207

Query: 224 -LSRGMGITRSLAAEVLKETQ 243
            ++     T  +A  +LK  +
Sbjct: 208 EIAERSRGTPRIANRLLKRVR 228


>gi|302024550|ref|ZP_07249761.1| ABC transporter ATP-binding membrane protein [Streptococcus suis
           05HAS68]
          Length = 483

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 73/193 (37%), Gaps = 29/193 (15%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            +  +++G SGSGKS LA I    +++++       +D   +       ++D       +
Sbjct: 300 GKKYLILGESGSGKSSLALI---LTKNSQLQAGDIYVDKTSLSDLSYQAIQDKIAYLPQE 356

Query: 124 TQLFH---IINSIHQYDSSLLMTARTFPV---SWGVCLPDLCSRLKAATVVKISLPDDDF 177
             LFH   + N             R  P     + +   +L SR  +   +   + DD  
Sbjct: 357 GSLFHDTVLYNLTM---------GREIPEDRLMFLIKTMNLDSRFPSYASLSEEISDDSG 407

Query: 178 LEKVI-VKMFADRQIFIDKKLAAYIVQRMERSLVFA-EKLVDKMDNL--ALSRGM--GIT 231
           L      ++   R +  DK +   ++  ++ SL    ++    ++N   +L+      I+
Sbjct: 408 LSGGQKQRLLLIRALLQDKDI---LL--LDESLSALDQETYAVIENYLTSLADKTLIHIS 462

Query: 232 RSLAAEVLKETQQ 244
             ++ EVL     
Sbjct: 463 HRMSEEVLSRYDG 475


>gi|295099698|emb|CBK88787.1| ATPase involved in DNA replication initiation [Eubacterium
          cylindroides T2-87]
          Length = 123

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRV--VILVGPSGSGK 77
          + +  QL          + ++ +   + ++A     +            +++ G SG GK
Sbjct: 34 QQRTNQL-LKCTFNEEYTFENFVEGKSNQEAYAACLACCNQRGTHMFNPIMIYGNSGLGK 92

Query: 78 SCLANI 83
          + L + 
Sbjct: 93 THLLHA 98


>gi|219118332|ref|XP_002179943.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408996|gb|EEC48929.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1015

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           D  P    RV++L GP G GK+ LA+I +  +             S    T + V
Sbjct: 373 DRRPEESCRVILLSGPPGVGKTTLAHIVARHAGYRPLEVNGSDERSASALTERIV 427


>gi|195619970|gb|ACG31815.1| vacuolar sorting protein 4b [Zea mays]
          Length = 435

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R  +L GP G+GKS LA   + ++ ST FS
Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 195


>gi|254453017|ref|ZP_05066454.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198267423|gb|EDY91693.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 586

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDT 107
           A  ++  +P+W    + + G  GSGKS L  + +    +   S         +     + 
Sbjct: 209 AAAILGGFPAW-RSHLYVYGSRGSGKSKLMEVAAGMLGEFGGSVLNDATEAGIRQSRNNQ 267

Query: 108 RKPVLLEDID-----LLDFNDTQLFHIINSI 133
            +P+L+++ +             +F +   +
Sbjct: 268 ARPILIDEFEPDQSVRNGSKQDGMFALFRRM 298


>gi|172038492|ref|YP_001804993.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171699946|gb|ACB52927.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 617

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKTNAPCI 257

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 258 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD    ++++      R   + K +    I +R       
Sbjct: 318 ------LRPGRFDRQVVVDRPDYAGRQEILKVHA--RGKTLSKDVDLDKIARRTP-GFTG 368

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 369 A-DLSNLLNEAAILAARRNLT 388


>gi|126652744|ref|ZP_01724896.1| hypothetical protein BB14905_21413 [Bacillus sp. B14905]
 gi|126590433|gb|EAZ84552.1| hypothetical protein BB14905_21413 [Bacillus sp. B14905]
          Length = 259

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 28/141 (19%)

Query: 40  RDDLLVHSAIEQAVRLI----DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95
            D+ L+    E+A +      +++  + +  ++L G  G+GK+ LA    +   +     
Sbjct: 76  FDNFLMRQGAEKAFKAAKYYAENFAEFGAESLLLWGDVGNGKTHLAASVHNHLVAQGKVV 135

Query: 96  IAKSLDSILIDTRK---------------------PVLLEDIDLLDFND---TQLFHIIN 131
           +  S+  +L   R                       ++++D+     +D     +F I +
Sbjct: 136 VFISMPELLGKIRATFNKNNNESEQQIMKALMICDLLIIDDLGAEKISDWVLETMFQIFD 195

Query: 132 SIHQYDSSLLMTARTFPVSWG 152
              +    +L T+   P    
Sbjct: 196 GRSRRKKPILATSNLNPKDLP 216


>gi|24660075|ref|NP_523959.2| smallminded, isoform A [Drosophila melanogaster]
 gi|7295244|gb|AAF50566.1| smallminded, isoform A [Drosophila melanogaster]
          Length = 944

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA   S +
Sbjct: 283 PSRGLLLHGPPGCGKTFLARAISGQ 307



 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 696 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 744


>gi|17541226|ref|NP_501861.1| Mitochondrial Sorting of Proteins (yeast MSP) in Nematode family
           member (mspn-1) [Caenorhabditis elegans]
 gi|14530491|emb|CAC42312.1| C. elegans protein K04D7.2b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 339

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G GK+ LA   +  +     +
Sbjct: 113 PPRGILLYGPPGCGKTLLAKAVARAAGCRFIN 144


>gi|46136671|ref|XP_390027.1| hypothetical protein FG09851.1 [Gibberella zeae PH-1]
          Length = 795

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 539 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 588


>gi|325568303|ref|ZP_08144670.1| replication-associated recombination protein A [Enterococcus
           casseliflavus ATCC 12755]
 gi|325158072|gb|EGC70225.1| replication-associated recombination protein A [Enterococcus
           casseliflavus ATCC 12755]
          Length = 425

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 68/172 (39%), Gaps = 24/172 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +R + R  N A           +   +     +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTRYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +++ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGKIIMIGATTENPYITIN-PAIRSR---TQIFEVKPLQE 152

Query: 176 DFLEKVIVKMFAD--RQIFIDKKLAAYIVQ-RMERSLV-FAEKLVDKMDNLA 223
           + +   I +  AD  R +  +  +     +  + R+        ++ ++  A
Sbjct: 153 EDILTAIDQALADETRGLGSETIVVTDDARLHLSRATNGDLRSALNGLELAA 204


>gi|320582077|gb|EFW96295.1| Putative ATPase of the AAA family [Pichia angusta DL-1]
          Length = 715

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++          
Sbjct: 465 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV---------- 514

Query: 123 DTQLFHI 129
              LF +
Sbjct: 515 -RALFQL 520


>gi|319940238|ref|ZP_08014590.1| ATPase [Streptococcus anginosus 1_2_62CV]
 gi|319810540|gb|EFW06876.1| ATPase [Streptococcus anginosus 1_2_62CV]
          Length = 423

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 57/176 (32%), Gaps = 25/176 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  ++               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            L+                +  ++M   T    +    P + SR     + ++    +D 
Sbjct: 102 RLEKTKQDFL----LPLLENGLVIMIGATTENPFFSVTPAIRSR---VQIFELEPLTNDD 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++ I     D  R     + +D     +I               + +D   LS  
Sbjct: 155 IKQAIQTALTDTERGFDFPVQLDDDALDFITTSTN---GDLRSAFNSLDLAVLSTK 207


>gi|315605193|ref|ZP_07880240.1| cell division protein FtsH [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313114|gb|EFU61184.1| cell division protein FtsH [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 683

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++ +  FS        + +      + E  +    N  
Sbjct: 210 RGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMELYVGVGASRVRELFERAKKNAP 269

Query: 125 QL 126
            +
Sbjct: 270 AI 271


>gi|300123320|emb|CBK24593.2| unnamed protein product [Blastocystis hominis]
          Length = 347

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 60/176 (34%), Gaps = 43/176 (24%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILIDTR 108
           R ++L GP G+GK+ L    +     T FS  A SL S                  +   
Sbjct: 102 RGLLLFGPPGTGKTLLGKAIAHGGGCTFFSISASSLTSKWMGEGEKMVRALFGVAEMKAP 161

Query: 109 KPVLLEDIDLLDF--NDTQL---------FHIINSIHQYDSS-------LLMTARTFPVS 150
             + +++ID L     +  L         F     +     S       L++ A   P  
Sbjct: 162 SVIFIDEIDSLLGMRREDDLEGTRRLKTEF----LVQLDGVSSAEKASILVIGATNRPQD 217

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
                 D  +R +    + I LPD++  + +   +    +  ID      +V+R E
Sbjct: 218 L-----DEAARRRFVKRLYIPLPDEETRKALFGILLKKNENQIDDAQIDVLVERSE 268


>gi|260654418|ref|ZP_05859908.1| replication-associated recombination protein A [Jonquetella
           anthropi E3_33 E1]
 gi|260631051|gb|EEX49245.1| replication-associated recombination protein A [Jonquetella
           anthropi E3_33 E1]
          Length = 426

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 32/205 (15%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTR-----FSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           IL GP G GK+ L  +    +          S     L  ++        L     + F 
Sbjct: 46  ILYGPPGVGKTALVRLMGRVTGRELLEINAVSAKVSELRDLVDRAADLRRLSGRSAIAFV 105

Query: 123 DTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           D  L+H  N           +    +L+   T    + +    L SRL    V +I   +
Sbjct: 106 DE-LYH-FNRSQQDALLPSVERGEVILVGTTTENPRFEIN-KTLLSRL---LVFEIGPLE 159

Query: 175 DDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            + L +++     DR       ++     +   I          A   ++ +       G
Sbjct: 160 KEDLVEILKSALTDRERGLGELELSASDDVIEAIAASAGGDGRQALTRLEFLSRAIAVSG 219

Query: 228 MG------ITRSLAAEVLKETQQCD 246
                   +T+SL A  ++  ++ D
Sbjct: 220 RRTIEEDDLTKSLPAAFVRHDRRQD 244


>gi|241646770|ref|XP_002411121.1| transitional endoplasmic reticulum ATPase, putative [Ixodes
          scapularis]
 gi|215503751|gb|EEC13245.1| transitional endoplasmic reticulum ATPase, putative [Ixodes
          scapularis]
          Length = 573

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
          P R  +L GP G+GK+ LA   + +S ++  
Sbjct: 57 PPRGALLFGPPGTGKTLLARAVAAESGASLV 87


>gi|198464466|ref|XP_001353233.2| GA21172 [Drosophila pseudoobscura pseudoobscura]
 gi|198149730|gb|EAL30736.2| GA21172 [Drosophila pseudoobscura pseudoobscura]
          Length = 933

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA   S +
Sbjct: 284 PSRGLLLHGPPGCGKTFLARAISGQ 308



 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 685 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 733


>gi|195384371|ref|XP_002050891.1| GJ19952 [Drosophila virilis]
 gi|194145688|gb|EDW62084.1| GJ19952 [Drosophila virilis]
          Length = 749

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D +L+    
Sbjct: 350 VLLVGPPGTGKTLLARAVAGEASVPFFHAAGPEFDEVLVGQGA 392


>gi|146420643|ref|XP_001486276.1| hypothetical protein PGUG_01947 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 768

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 32/153 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P R V+L GP G+GK+ L    +++  +   +                +L  I ++ R  
Sbjct: 269 PPRGVLLHGPPGTGKTMLLRSVANEVDAHVLAVNGPSIVSKYLGETENALREIFLEARQY 328

Query: 109 --KPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID L  N                L  +++ + +    +++ A   P S   
Sbjct: 329 QPSIIFMDEIDSLAPNRNSDDSGETESRVVATLLTMMDGMGESGRVVVIGATNRPNSLD- 387

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
             P L    +    V+I +PD +    ++ K F
Sbjct: 388 --PALRRPGRFDQEVEIGIPDVNARLDILSKQF 418


>gi|281365776|ref|NP_001163371.1| smallminded, isoform C [Drosophila melanogaster]
 gi|1770214|emb|CAA67594.1| smallminded [Drosophila melanogaster]
 gi|272455082|gb|ACZ94642.1| smallminded, isoform C [Drosophila melanogaster]
          Length = 943

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA   S +
Sbjct: 282 PSRGLLLHGPPGCGKTFLARAISGQ 306



 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 695 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 743


>gi|73669571|ref|YP_305586.1| replication factor C large subunit [Methanosarcina barkeri str.
           Fusaro]
 gi|110287808|sp|Q46AT6|RFCL_METBF RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|72396733|gb|AAZ71006.1| replication factor C large subunit [Methanosarcina barkeri str.
           Fusaro]
          Length = 642

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 21/95 (22%)

Query: 48  AIEQAVRLIDSWPS-WPS-----RVVILVGPSGSGKSCLANIWS-------------DKS 88
             ++AV+ + +W   W S     R V+L GP+G GK+  A+  +             D+ 
Sbjct: 21  GNKKAVQYLRTWAEKWLSGIPDRRAVVLHGPAGVGKTSTAHALARDLDWEVIELNASDQR 80

Query: 89  RSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDF 121
            +     +A S  S+      ++ ++L++ D +  
Sbjct: 81  TAGVIERVAGSAASMNTFFGGKRLIILDEADNIHG 115


>gi|310794958|gb|EFQ30419.1| ATPase [Glomerella graminicola M1.001]
          Length = 437

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 16/83 (19%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            +W  + ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++       
Sbjct: 166 QAW--KGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV------- 216

Query: 120 DFNDTQLFHIINSIHQYDSSLLM 142
                 LF       +   S+L 
Sbjct: 217 ----KALFS---MARENKPSVLF 232


>gi|300721990|ref|YP_003711270.1| ATPase [Xenorhabdus nematophila ATCC 19061]
 gi|297628487|emb|CBJ89054.1| ATPase, chaperone subunit of serine protease [Xenorhabdus
           nematophila ATCC 19061]
          Length = 423

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+    VP ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKELVPHRERSALPT----------PHEIRQHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R+ ++  ++      T
Sbjct: 96  YKRLRNGDTNNGVELGKSNILLIGPTGSGKTLLAETLA------RYLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|269792161|ref|YP_003317065.1| AAA ATPase central domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099796|gb|ACZ18783.1| AAA ATPase central domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 421

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 19/138 (13%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDI---DLLDFN 122
           IL GP G GK+ L  + +  +       + +   L  +     +   L  +     + F 
Sbjct: 49  ILYGPPGVGKTTLVRLMATTTGRELLEINAVTSKLSDLRALADRAASLTSMGFEPPIAFV 108

Query: 123 DTQLFHIINSIHQY-------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           D  ++H  NS  Q           +++   T    W      L SR+    V ++   +D
Sbjct: 109 DE-IYH-FNSQQQNVLLPFVESGQMVLVGTTTENPWFEVNKTLLSRM---LVYELKPLED 163

Query: 176 DFLEKVIVKMFA--DRQI 191
             + +V+V+     DR +
Sbjct: 164 RHVIQVLVRALEDFDRGL 181


>gi|225423767|ref|XP_002277238.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297737931|emb|CBI27132.3| unnamed protein product [Vitis vinifera]
          Length = 1032

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ LA   + ++ +   S    +L S
Sbjct: 775 PCKGILLFGPPGTGKTLLAKALATEAGANFISVTGSNLTS 814


>gi|206588441|emb|CAQ35404.1| probable transposition helper protein [Ralstonia solanacearum
           MolK2]
          Length = 453

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 284 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 338

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 339 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 396

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 397 FTQWATAFAD 406


>gi|195978892|ref|YP_002124136.1| recombination factor protein RarA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975597|gb|ACG63123.1| ATPase AAA family recombination factor RarA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 423

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +        +T      + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDNKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD +          + ++   +++ A T    + V  P + SR     + ++     + 
Sbjct: 102 RLDKSKQDFLLP---LLEHGHIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSPEE 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +++ +     D  R     + +D+    +I       L  A + +D
Sbjct: 155 IKQALKLAITDKERGFAFDVTLDEAAFDFIATATNGDLRAAYQSLD 200


>gi|195391800|ref|XP_002054548.1| GJ24517 [Drosophila virilis]
 gi|194152634|gb|EDW68068.1| GJ24517 [Drosophila virilis]
          Length = 384

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G GK+ LA   ++++ +     +        +     ++ +
Sbjct: 164 PPRGVLLYGPPGCGKTMLAKAVANQTTAAFIRVVGSEFVQKYLGEGPRMVRD 215


>gi|170025916|ref|YP_001722421.1| ribose 1,5-bisphosphokinase [Yersinia pseudotuberculosis YPIII]
 gi|169752450|gb|ACA69968.1| phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming)
           PhnN [Yersinia pseudotuberculosis YPIII]
          Length = 193

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
           +R++ L+GPSG+GK CL +   + +                      V L   + +   +
Sbjct: 2   ARLIYLMGPSGAGKDCLLSALRNATPQNMVVAHRYITRPADAGAENHVALSKQEFIQRAE 61

Query: 124 TQLFHIINSIHQY 136
             LF +    HQ+
Sbjct: 62  QGLFALHWQAHQH 74


>gi|156543233|ref|XP_001606546.1| PREDICTED: similar to ENSANGP00000022333 [Nasonia vitripennis]
          Length = 705

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++    F       D I +    
Sbjct: 327 VLLVGPPGTGKTLLARAVAGEAGVPFFYAAGPEFDEIFVGQGA 369


>gi|150016919|ref|YP_001309173.1| ABC transporter [Clostridium beijerinckii NCIMB 8052]
 gi|149903384|gb|ABR34217.1| ABC transporter related [Clostridium beijerinckii NCIMB 8052]
          Length = 236

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 16/61 (26%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V ++GPSGSGKS L ++                L  +   T   VL+++ D+ + ++TQ
Sbjct: 44  FVAIIGPSGSGKSTLLHM----------------LGGVDRPTSGKVLVDNTDIYNLDETQ 87

Query: 126 L 126
           L
Sbjct: 88  L 88


>gi|145492132|ref|XP_001432064.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399173|emb|CAK64667.1| unnamed protein product [Paramecium tetraurelia]
          Length = 443

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 47  SAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           SA+++AV L   +P +      P + +++ GP G+GK+ LA   + ++  T FS  +  L
Sbjct: 153 SALQEAVLLPIRFPDFFEGARTPWKGILMYGPPGTGKTYLAKACATEAEGTFFSVSSADL 212


>gi|114653055|ref|XP_509951.2| PREDICTED: similar to Psmc6 protein isoform 3 [Pan troglodytes]
          Length = 353

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 232 ------MFNYARDHQ 240


>gi|116624471|ref|YP_826627.1| recombination factor protein RarA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227633|gb|ABJ86342.1| Recombination protein MgsA [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 434

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 52/155 (33%), Gaps = 35/155 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124
           +IL GP G GK+ LA++ +  ++       A       I      ++ D + L      T
Sbjct: 55  IILWGPPGVGKTTLAHLIAKVTKCEFIPFSAVLSGMKEIKA----VMVDAEKLRRLGRRT 110

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDL-CSRL--------- 162
            LF    H  N           +    +L+ A T   S+ V    L  SR+         
Sbjct: 111 ILFVDEIHRFNKAQQDAFLPYVERGDIILIGATTENPSFEVIAALLSRSRVYALRAFTVP 170

Query: 163 -------KAATVVKISLPDDDFLEKVIVKMFADRQ 190
                  +A  V+ +   DD   +  I      RQ
Sbjct: 171 EIVTMLKRALPVLHLQASDDLLEQIGIYSNGDGRQ 205


>gi|67538894|ref|XP_663221.1| hypothetical protein AN5617.2 [Aspergillus nidulans FGSC A4]
 gi|40743520|gb|EAA62710.1| hypothetical protein AN5617.2 [Aspergillus nidulans FGSC A4]
 gi|259484914|tpe|CBF81541.1| TPA: DNA replication ATPase (Eurofung) [Aspergillus nidulans FGSC
           A4]
          Length = 528

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 67/198 (33%), Gaps = 30/198 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111
             +IL G  G+GK+ +A + +    S                   A +   + +  RK +
Sbjct: 151 PSMILWGGPGTGKTTIARVIASMVGSRFVEINSTSTGVAECKKIFADAKSELGLTGRKTI 210

Query: 112 LL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +  ++I     +   +F       +     L+ A T   S+ V    L SR        +
Sbjct: 211 IFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQNA-LLSR---CRTFTL 263

Query: 171 SLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRME---RSLVFAEKLVDKMDN 221
           S   D+ +  ++ +              +D +L  Y+ +  +   R+ +   +L   +  
Sbjct: 264 SKLTDEDIRSILNRALKTEGPNYSPSALVDDELLDYLAKFADGDARTSLNLLELGMNLSK 323

Query: 222 LALSRGMGITRSLAAEVL 239
                   I R+L   ++
Sbjct: 324 RPGISKDEIKRALTKTLV 341


>gi|329113826|ref|ZP_08242597.1| Cell division protease FtsH-like protein [Acetobacter pomorum
           DM001]
 gi|326696836|gb|EGE48506.1| Cell division protease FtsH-like protein [Acetobacter pomorum
           DM001]
          Length = 645

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 47/198 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 192 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKSAPCI 251

Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGV 153
           + +++ID +            ++ +    +N +          +  +L+ A   P     
Sbjct: 252 IFIDEIDAVGRHRGAGMGGGNDERE--QTLNQMLVEMDGFESNEGVILIAATNRPDVLDP 309

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    EK++      R++ +   +   I+ R      
Sbjct: 310 AL------LRPGRFDRQVVVPNPDVSGREKILRVHM--RKVPLASDVDPRIIARGTPGFS 361

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  ALS   
Sbjct: 362 GA-DLANLVNEAALSAAR 378


>gi|323465366|gb|ADX77519.1| cell division protein FtsH, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 704

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 47/198 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVTGREAILHVHAKNKPL---DETVDLKAIAQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  +L    
Sbjct: 371 GA-DLENLLNEASLIAAR 387


>gi|323137680|ref|ZP_08072756.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
 gi|322396977|gb|EFX99502.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242]
          Length = 388

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS---TRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           V+L GP G+GK+ L +  +           S            +    ++EDID + 
Sbjct: 207 VVLHGPPGTGKTSLIHALASDFGFDIKYIKSLHGLGAAFKSGTSNDLFVIEDIDTIA 263


>gi|319891464|ref|YP_004148339.1| Cell division protein FtsH [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161160|gb|ADV04703.1| Cell division protein FtsH [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 704

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 47/198 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210
                 L+       +++  PD    E ++     ++ +    +      I QR      
Sbjct: 321 ------LRPGRFDRQIQVGRPDVTGREAILHVHAKNKPL---DETVDLKAIAQRTP-GFS 370

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  +L    
Sbjct: 371 GA-DLENLLNEASLIAAR 387


>gi|315039481|ref|XP_003169116.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893]
 gi|311337537|gb|EFQ96739.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893]
          Length = 743

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++SR+   S
Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546



 Score = 36.3 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      +  A S+ S +    +  L +  +  
Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 266


>gi|291166195|gb|EFE28241.1| replicative DNA helicase [Filifactor alocis ATCC 35896]
          Length = 284

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 25/120 (20%)

Query: 67  VILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSIL------------IDTRKP 110
           +IL G  G+GK+ LA+  +    +K  S R +N    L+ ++            +++ + 
Sbjct: 132 LILTGAVGTGKTYLASSIANALIEKGISVRMTNFGVILNDMMNLQIDKNMYIKNLNSNRL 191

Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFPVSWGVCLPDLC-----SRL 162
           ++++D  +       L HI N I   ++ +  +++T         +   DL      SRL
Sbjct: 192 LIIDDFGIQRDTSFALEHIFNIIDSRYRANKPIIVTTNLSISHL-MNTTDLKEKRIYSRL 250


>gi|282165485|ref|YP_003357870.1| cell division control protein 48 [Methanocella paludicola SANAE]
 gi|282157799|dbj|BAI62887.1| cell division control protein 48 [Methanocella paludicola SANAE]
          Length = 765

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 57/166 (34%), Gaps = 39/166 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ +A   + ++ +   S     +                     +
Sbjct: 214 PPKGVLLYGPPGTGKTMIAKAVASETDANFISISGPEIMSKYYGESEKQLRDIFKEAEDN 273

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 274 APSIIFIDEIDSIAPRREEVTGEVERRVVAQLLALMDGLQARGQVIVVAATNRPNA---V 330

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +       ++I +PD +   +++      R + +   +
Sbjct: 331 DPALR---RGGRFDREIEIGVPDKNGRLEIL--HVHTRGMPLASDV 371


>gi|254499263|ref|ZP_05111939.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Legionella drancourtii LLAP12]
 gi|254351507|gb|EET10366.1| cell division control protein 48 ATPase of AAA family CDC48
           subfamily [Legionella drancourtii LLAP12]
          Length = 708

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 28/117 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP GSGK+ +A   + ++ ++ FS                N+ K  +         
Sbjct: 216 VLLYGPPGSGKTLIAKAIAHETDASFFSISGPEIVHKFYGESEANLRKIFEQAAQKAPSI 275

Query: 111 VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + L++ID +    +            QL  +++ ++     +++ A   P S    L
Sbjct: 276 IFLDEIDAIAPKRDQVVGEVEKRIVAQLLALMDGLNTRQKVIVIGATNLPNSIDSAL 332


>gi|254475304|ref|ZP_05088690.1| type I secretion system ATPase [Ruegeria sp. R11]
 gi|214029547|gb|EEB70382.1| type I secretion system ATPase [Ruegeria sp. R11]
          Length = 577

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           P + + ++GPSGSGKS LA      + + R +     LD   ID   P +L
Sbjct: 359 PGQAIGVIGPSGSGKSTLAR---ALTGAWRPAAGTVRLDGASIDQYAPEVL 406


>gi|212638579|ref|YP_002315099.1| recombination factor protein RarA [Anoxybacillus flavithermus WK1]
 gi|212560059|gb|ACJ33114.1| ATPase [Anoxybacillus flavithermus WK1]
          Length = 426

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 28/168 (16%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD-------- 86
              I +DD  V  +     R+I    +     ++L GP G GK+ LA   +         
Sbjct: 18  DEVIGQDD--VIGSHTALYRMIK---NGYVPSLLLYGPPGVGKTSLAYAIAGTVQRPFYM 72

Query: 87  -KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--DFNDTQLFHIINSIHQYDSSLLM- 142
             + +     + + +     +    + +++I        D  L H+     +     L+ 
Sbjct: 73  LNATTAGKKEMEEIVADARFEGNVILFIDEIHRFTKAQQDYLLPHV-----ESGLITLIG 127

Query: 143 -TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
            T      S     P + SRL    + ++     +    ++ +  ADR
Sbjct: 128 ATTENPFHSIN---PAVRSRL--GQIKQLQPLTKEKTLALLHRALADR 170


>gi|195162967|ref|XP_002022325.1| GL26363 [Drosophila persimilis]
 gi|194104286|gb|EDW26329.1| GL26363 [Drosophila persimilis]
          Length = 909

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA   S +
Sbjct: 265 PSRGLLLHGPPGCGKTFLARAISGQ 289



 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 661 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 709


>gi|167388769|ref|XP_001738689.1| 26S protease regulatory subunit 6A [Entamoeba dispar SAW760]
 gi|165897953|gb|EDR24975.1| 26S protease regulatory subunit 6A, putative [Entamoeba dispar
           SAW760]
          Length = 422

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ +A   + +++ST     A  L S  I     ++ +
Sbjct: 206 VLLYGPPGTGKTLMARACAAQTKSTFLKLAASQLVSSSIGDGSRIIRD 253


>gi|170113226|ref|XP_001887813.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164637174|gb|EDR01461.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 382

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
           + +I+ GPS +GK+     W+       + N   +      +    ++L+DID   F  
Sbjct: 259 KALIIWGPSRTGKT----EWARSLGPHSYHNFQMNGSEFDENKASYIVLDDIDPASFPQ 313


>gi|57642154|ref|YP_184632.1| replication factor C large subunit [Thermococcus kodakarensis KOD1]
 gi|62287361|sp|Q5JHP1|RFCL_PYRKO RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|57160478|dbj|BAD86408.1| replication factor C, large subunit [Thermococcus kodakarensis
           KOD1]
          Length = 499

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 39/189 (20%)

Query: 48  AIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS---------- 94
           A+EQ    +++W          ++L GP G GK+      +++                 
Sbjct: 24  ALEQVRAWVEAWLHGNPPKKKALLLAGPPGVGKTTTVYALANEYGFEVIELNASDERTYE 83

Query: 95  -----NIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR- 145
                  A     IL   RK + L++ D +      +         I +  + ++M+A  
Sbjct: 84  KIERYVQAAYTMDILGKRRKLIFLDEADNIEPSGAREIA-----KLIDKARNPIIMSANH 138

Query: 146 --TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
               P                A +V+        + K +V++     + + K++   I +
Sbjct: 139 YWEVPREIRNK----------AQIVEYKRLTQRDIIKALVRILKREGLEVPKEVLYEIAK 188

Query: 204 RMERSLVFA 212
           R    L  A
Sbjct: 189 RANGDLRAA 197


>gi|331702365|ref|YP_004399324.1| AAA ATPase central domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129708|gb|AEB74261.1| AAA ATPase central domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 441

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 22/134 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +I  GP G GK+ LA I + K+++    FS +   +  I    +      + +     
Sbjct: 52  PSIIFWGPPGVGKTTLAEIIAKKTQAKFVTFSAVTSGIKEIREIMKDA----EANREMGG 107

Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
            T +F    H  N           +  S  L+ A T   S+ +    L SR     V  +
Sbjct: 108 KTIVFVDEIHRFNKAQQDAFLPFVERGSITLIGATTENPSFEINSA-LLSR---CKVFVL 163

Query: 171 SLPDDDFLEKVIVK 184
              + D + ++I +
Sbjct: 164 QPLETDDIVQLIHQ 177


>gi|331248548|ref|XP_003336897.1| hypothetical protein PGTG_18303 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309315887|gb|EFP92478.1| hypothetical protein PGTG_18303 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 544

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 31/123 (25%)

Query: 63  PSRVVILVGPSGSGKSC-LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P  V ++ GP G+GK+  L +I          + +    D I+I     + +++I     
Sbjct: 32  PCPVTLVFGPPGTGKTHTLVSI---------IAALYARGDRIIIAAASNLAIDNIA---- 78

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181
              +L  +          L +T    P      L  L S   +    +++  D+  + + 
Sbjct: 79  --ERLLDL---------KLPITRLGHPAR---VLDSLSS---STLEYQLNTSDESEIIRD 121

Query: 182 IVK 184
           + K
Sbjct: 122 LKK 124


>gi|291528586|emb|CBK94172.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1]
          Length = 702

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 43/141 (30%), Gaps = 45/141 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + I                     
Sbjct: 239 ALLVGPPGTGKTLLAKAVAGEAGVPFFSLAGSDFVEMFIGVGASRVRDLFKEAQKMAPCI 298

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        L++ A   P      L
Sbjct: 299 IFIDEIDAIGKSRDSRYGGGNDEREQTLNQLLAEMDGFDTSKGLLILAATNRPEVLDKAL 358

Query: 156 --------------PDLCSRL 162
                         PDL  RL
Sbjct: 359 LRPGRFDRRIIVDKPDLKGRL 379


>gi|195134568|ref|XP_002011709.1| GI10939 [Drosophila mojavensis]
 gi|193906832|gb|EDW05699.1| GI10939 [Drosophila mojavensis]
          Length = 500

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P R ++L GP GSGK+ LA     ++R 
Sbjct: 261 PWRSLLLHGPPGSGKTYLAKALYAETRG 288


>gi|189461514|ref|ZP_03010299.1| hypothetical protein BACCOP_02173 [Bacteroides coprocola DSM 17136]
 gi|189431783|gb|EDV00768.1| hypothetical protein BACCOP_02173 [Bacteroides coprocola DSM 17136]
          Length = 403

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR----------FSNIAKSLDSILIDTRKPVLLEDI 116
           +IL G  G+GK+ LA   ++   +            +++  + L     D    +  E  
Sbjct: 226 LILTGAPGTGKTHLAKAIAEAMDAEYDFVQFHPSYDYTDFVEGLRPTPPDNNGNIGFERK 285

Query: 117 DLL 119
           D +
Sbjct: 286 DGV 288


>gi|37624801|gb|AAQ96168.1| putative transposase [Gordonia sp. CYKS2]
          Length = 267

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 47/152 (30%)

Query: 30  FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           F F    G+ RD        D +V                     V+ +GP G+GK+ LA
Sbjct: 86  FDFDHARGLKRDLIAHLGTLDFVVAKDN-----------------VVFLGPPGTGKTHLA 128

Query: 82  ---NIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND 123
               I + ++        A    ++L                     ++++++  + F  
Sbjct: 129 IGLAIRACQAGHRVLFATAADWVNVLAQAHHAGKLQAELVRLGRYPLLVIDEVGYIPFEP 188

Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                 F ++ S     +SL++T+      WG
Sbjct: 189 EAANLFFQLV-SSRYERASLIVTSNKQFGRWG 219


>gi|81294202|gb|AAI07951.1| Psmc6 protein [Rattus norvegicus]
          Length = 381

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 158 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 209

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 210 ------MFNYARDHQ 218


>gi|329114603|ref|ZP_08243362.1| Replication-associated recombination protein A [Acetobacter pomorum
           DM001]
 gi|326696083|gb|EGE47765.1| Replication-associated recombination protein A [Acetobacter pomorum
           DM001]
          Length = 453

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 26/144 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL G  G GK+ +A + +  +     + S +   +  +                    T
Sbjct: 76  LILWGGPGVGKTTIARLLAQAAGLKFVQLSAVFSGVADLKKAFENA----RRQAEAGGGT 131

Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q          ++++   T      +       L SR     V+ +
Sbjct: 132 LLFVDEIHRFNRAQQDGFLPVVEDGTVVLVGATTENPSFALNSA---LLSR---CQVMVL 185

Query: 171 SLPDDDFLEKVIVKMFADRQIFID 194
           +  DD   E ++V+   +    + 
Sbjct: 186 NRLDDPACEALLVRAEEETGRPLP 209


>gi|321157133|emb|CBW39119.1| AAA+ ATPase [Streptococcus phage 23782]
          Length = 256

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           +  A ++   W       ++L G +G+GKS LA
Sbjct: 103 LAFAKKICREWSEGVRNNIVLQGEAGTGKSHLA 135


>gi|295054734|gb|ADF59564.1| MIP20544p [Drosophila melanogaster]
          Length = 910

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA   S +
Sbjct: 249 PSRGLLLHGPPGCGKTFLARAISGQ 273



 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 662 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 710


>gi|260439221|ref|ZP_05793037.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876]
 gi|292808236|gb|EFF67441.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876]
          Length = 646

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 44/140 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
            +LVGP G+GK+ LA   + ++                     S +       +      
Sbjct: 232 ALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGASRVRDLFKQAIAAAPCI 291

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
           + +++ID +          ND       QL   ++        L++ A   P      L 
Sbjct: 292 IFIDEIDAIGKSRDSQFGGNDEREQTLNQLLSEMDGFDSSKGVLILAATNRPEVLDKALL 351

Query: 156 -------------PDLCSRL 162
                        PDL  RL
Sbjct: 352 RPGRFDRRIIVDKPDLKGRL 371


>gi|261417160|ref|YP_003250843.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373616|gb|ACX76361.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 696

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 36/163 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 226 ALLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFETGKKNAPCI 285

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +L+ A   P      L
Sbjct: 286 LFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFTANEGVILIAATNRPDVLDKAL 345

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             L   R     VV +  PD    E+++      R++ +   +
Sbjct: 346 --LRPGRFDRQIVVGL--PDLKGREEILKVHLKKRKVPLGDDV 384


>gi|261203737|ref|XP_002629082.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis SLH14081]
 gi|239586867|gb|EEQ69510.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis SLH14081]
          Length = 812

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S
Sbjct: 583 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 622


>gi|238014828|gb|ACR38449.1| unknown [Zea mays]
          Length = 391

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 119 PQKGVLLYGPPGTGKTMLAKAIARESGAVFIN 150


>gi|227496429|ref|ZP_03926715.1| recombination factor protein RarA [Actinomyces urogenitalis DSM
           15434]
 gi|226834048|gb|EEH66431.1| recombination factor protein RarA [Actinomyces urogenitalis DSM
           15434]
          Length = 455

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 65/175 (37%), Gaps = 28/175 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           +IL GP G GK+ +A + +  +       S  FS +A+ L  +     +   +    LL 
Sbjct: 62  IILWGPPGCGKTTIARLLASGTGLVFEQVSATFSGVAE-LRKVFSAAAQRRQIGQRTLLF 120

Query: 121 FNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            ++    H  N           +  + +L+  T              L SR     V+ +
Sbjct: 121 VDEI---HRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNGA---LLSR---CQVLVL 171

Query: 171 SLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               D    ++I +    + R++ + ++    +V   +    +   +V+++  LA
Sbjct: 172 HRLPDQAQAELIERAEKLSGRRLPLTQQARQALVAMADGDGRYLLGMVEQLLGLA 226


>gi|206601486|gb|EDZ37971.1| transposase [Leptospirillum sp. Group II '5-way CG']
          Length = 242

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 22/148 (14%)

Query: 32  FPRCLGISRDDLLVHSAIEQAV--RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
           FP    +   D  V   +++ +   +I +     SR +++ GP+G GK  LA      + 
Sbjct: 66  FPVSASLENLDFTVDRKLKRPLIRDMISASFVSQSRNILIAGPTGVGKIHLACALGQAAC 125

Query: 90  STRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDTQLFHIIN 131
              F+ +  SL+ +L                  +     ++++D  L      QL  I +
Sbjct: 126 RQGFTTLFFSLNRLLEKIALTRAQGRYLSLLKKLTGVSCLIIDDFGLRALTPQQLQDIYD 185

Query: 132 SI--HQYDSSLLMTARTFPVSWGVCLPD 157
            +     + + ++T +    +W   LPD
Sbjct: 186 LVDGRVENLTTIVTTQLPVENWSEILPD 213


>gi|156054484|ref|XP_001593168.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980]
 gi|154703870|gb|EDO03609.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 774

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 56/212 (26%)

Query: 3   LMKEDYSFFV---PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW 59
           +M E ++  V   P   K D     E Q   +         D+      +++ V  + + 
Sbjct: 265 MMIEGFNSVVARRPGGAKADNEAKAEHQ---NVRFTDVHGCDE--AKDELQELVDFLKNP 319

Query: 60  PSWPS------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----- 108
             + +      + V+LVGP G+GK+ LA   + ++    F       D I +        
Sbjct: 320 EKFSTLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEIYVGVGAKRVR 379

Query: 109 -----------KPVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTAR 145
                        + ++++D +                  L   ++   Q +  +++ A 
Sbjct: 380 ELFTAAKSKSPAIIFIDELDAIGGKRNARDAAYSKQTLNQLLTELDGFAQNNGVIILAAT 439

Query: 146 TFPVSWG--------------VCLPDLCSRLK 163
            FP                  V LPD+  RL 
Sbjct: 440 NFPELLDKALTRPGRFDRNVVVGLPDVRGRLA 471


>gi|148239552|ref|YP_001224939.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147848091|emb|CAK23642.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 637

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 45/204 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCL 276

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 277 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSAL 336

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       V +  PD      ++     ++++  +  L   I +R       A
Sbjct: 337 ------MRPGRFDRQVTVDAPDIKGRLSILEVHSRNKKLDPELSL-DSIARRTP-GFTGA 388

Query: 213 EKLVDKMDNLAL--SRGMGITRSL 234
             L + ++  A+  +R    T SL
Sbjct: 389 -DLANLLNEAAILTARRRKETISL 411


>gi|17541224|ref|NP_501860.1| Mitochondrial Sorting of Proteins (yeast MSP) in Nematode family
           member (mspn-1) [Caenorhabditis elegans]
 gi|21903441|sp|P54815|MSP1_CAEEL RecName: Full=Mitochondrial sorting homolog
 gi|14530490|emb|CAA93516.2| C. elegans protein K04D7.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 342

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G GK+ LA   +  +     +
Sbjct: 116 PPRGILLYGPPGCGKTLLAKAVARAAGCRFIN 147


>gi|326429420|gb|EGD74990.1| skd/vacuolar sorting protein [Salpingoeca sp. ATCC 50818]
          Length = 435

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F +++ S
Sbjct: 158 PWRGILLYGPPGTGKSYLAKAVASEANNSTFISVSSS 194


>gi|301612800|ref|XP_002935905.1| PREDICTED: chromosome transmission fidelity protein 18 homolog
           [Xenopus (Silurana) tropicalis]
          Length = 982

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 19/88 (21%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI------------------ 105
           ++V +L GP G GK+ LA++ +  +        A    S  I                  
Sbjct: 370 NKVALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPEIFKTRIEAATQMKSVLGVD 429

Query: 106 DTRKPVLLEDID-LLDFNDTQLFHIINS 132
           +    +++++ID     +   L  +IN 
Sbjct: 430 ERPNCLIIDEIDGAPTVSINMLLSLINR 457


>gi|253996802|ref|YP_003048866.1| recombination factor protein RarA [Methylotenera mobilis JLW8]
 gi|253983481|gb|ACT48339.1| AAA ATPase central domain protein [Methylotenera mobilis JLW8]
          Length = 435

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           ++ S     +IL GP G GK+ LA + ++ + +  F  I+  L  I        L E   
Sbjct: 42  AFQSGKLPSMILWGPPGVGKTTLARLIANTADAE-FIPISAVLSGIKDIREAVELAEHTL 100

Query: 118 LLDFNDTQLF----HIINSIHQY 136
                 T LF    H  N   Q 
Sbjct: 101 QQHRRKTILFVDEVHRFNKGQQD 123


>gi|256820268|ref|YP_003141547.1| recombination factor protein RarA [Capnocytophaga ochracea DSM
          7271]
 gi|256581851|gb|ACU92986.1| AAA ATPase central domain protein [Capnocytophaga ochracea DSM
          7271]
          Length = 426

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
            +I  GP G+GK+ LANI + +S    ++  A S
Sbjct: 40 PSLIFWGPPGTGKTTLANIIAHQSNRAFYTLSAIS 74


>gi|255582646|ref|XP_002532103.1| Protein MSP1, putative [Ricinus communis]
 gi|223528225|gb|EEF30282.1| Protein MSP1, putative [Ricinus communis]
          Length = 323

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ LA   + ++ +   S    +L S
Sbjct: 69  PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 108


>gi|92113209|ref|YP_573137.1| AAA ATPase, central region [Chromohalobacter salexigens DSM 3043]
 gi|91796299|gb|ABE58438.1| AAA ATPase, central region [Chromohalobacter salexigens DSM 3043]
          Length = 360

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 38/206 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR-STRFSNIAKSLD--------------SILIDT 107
           P+R ++  GP G GK+  AN  +++   S    ++A  +                   ++
Sbjct: 119 PTRTMLFTGPPGVGKTLAANWLAERVGKSIIVLDLAAVMSSYLGQTGNNLKKVIEEAGNS 178

Query: 108 RKPVLLEDIDLLD------FNDTQLFHIINSIHQ-----YDSSLLMTARTFPVSWGVCLP 156
              + L++ D +        +  +L  ++N + Q         LL+ A   P        
Sbjct: 179 GSVLFLDEFDAIAKRRGDDGDIGELKRLVNVLLQSLDSWSKDGLLIAATNHPEMLD---- 234

Query: 157 DLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFA 212
               R        VV+   PD + + K+I        + ++  L     + +E  S    
Sbjct: 235 ----RAVWRRFDRVVEFDNPDIEHIFKLIKGRVVYSGVEVNDSLIKTASKTLEGCSYSDV 290

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEV 238
           +  V  +   ++  G+ +       V
Sbjct: 291 DNWVSSVFRASVVNGVEVEEKFLERV 316


>gi|26990707|ref|NP_746132.1| recombination factor protein RarA [Pseudomonas putida KT2440]
 gi|24985700|gb|AAN69596.1|AE016593_4 ATPase, AAA family [Pseudomonas putida KT2440]
 gi|313498109|gb|ADR59475.1| Recombination factor protein RarA [Pseudomonas putida BIRD-1]
          Length = 441

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +    +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +LL    T              L SR 
Sbjct: 99  AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R + +       ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRNLRVGDDAFKMLMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   +   +L ++++
Sbjct: 210 NFLENASDLAEDGSEIDVEMLQSLLGDSRR 239


>gi|68535618|ref|YP_250323.1| ATP-dependent protease ATP-binding subunit [Corynebacterium
           jeikeium K411]
 gi|68263217|emb|CAI36705.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium
           jeikeium K411]
          Length = 424

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           V  +   A R  D      S +++L GP+GSGK+ LA   +      R  ++  ++    
Sbjct: 96  VEESNAAARRSDDEVELAKSNILML-GPTGSGKTYLAQSLA------RMLDVPFAIADAT 148

Query: 105 IDTRKPVLLEDIDLL 119
             T    + ED++ +
Sbjct: 149 SLTEAGYVGEDVENI 163


>gi|24987361|pdb|1IXR|C Chain C, Ruva-Ruvb Complex
          Length = 312

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113
           P   ++L GP G GK+ LA++ + +           +        ++ +  ++    + +
Sbjct: 37  PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 96

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157
           ++I  L     +  H+  ++  +   +++       +  + LP                 
Sbjct: 97  DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L SR      ++   P++  L + +++      + I ++ A  I +R   ++  A++L  
Sbjct: 155 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212

Query: 218 KMDNLALSRGMGI 230
           ++ + A   G  +
Sbjct: 213 RVRDFAQVAGEEV 225


>gi|330990290|ref|ZP_08314262.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|330991140|ref|ZP_08315094.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|330991989|ref|ZP_08315938.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|330992231|ref|ZP_08316179.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|330992557|ref|ZP_08316505.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|330994383|ref|ZP_08318310.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329758578|gb|EGG75095.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329760430|gb|EGG76926.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329760756|gb|EGG77252.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329761010|gb|EGG77505.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329761961|gb|EGG78451.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329762656|gb|EGG79128.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
          Length = 264

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWS--------DKSRSTRFSNIAKSLDSILIDTRKPVLLE---D 115
           V+L+G  G+GK+ LA   +         K+R     ++  +L+      R   + +    
Sbjct: 110 VVLIGGPGTGKTHLATALAIQAITHHRKKARFWSTVDLVNALEQEKTANRAGQIADRLLR 169

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +DL+  ++             LFH+++ +++  +S+++T       WG
Sbjct: 170 LDLVILDELGYLPFSASGGALLFHLLSRLYER-TSVIITTNLSFSEWG 216


>gi|327262399|ref|XP_003216012.1| PREDICTED: spastin-like [Anolis carolinensis]
          Length = 627

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S ST F+  A SL S  +   + ++
Sbjct: 386 PARGLLLFGPPGNGKTMLAKAVAAESNSTFFNISAASLTSKYVGEGEKLV 435


>gi|301623590|ref|XP_002941102.1| PREDICTED: spermatogenesis-associated protein 5-like [Xenopus
           (Silurana) tropicalis]
          Length = 792

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 31/124 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKP 110
           P R V+L GP G+GK+ +A   +++  +              +      L  I  D  + 
Sbjct: 287 PPRGVLLYGPPGTGKTLIARAIANEVGAHVTVINGPEIVSKFYGESEARLRQIFADASQC 346

Query: 111 ----VLLEDIDLL------DFNDTQ------LFHIINSI--HQYDSSLLMTART-FPVSW 151
               + ++++D L        N+ +      L  +++ I   +    LL+   T  P S 
Sbjct: 347 CPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEESQGQLLVLGATNRPHSL 406

Query: 152 GVCL 155
              L
Sbjct: 407 DPAL 410


>gi|255743754|ref|ZP_05417712.1| IstB domain protein ATP-binding protein [Vibrio cholera CIRS 101]
 gi|255738615|gb|EET94002.1| IstB domain protein ATP-binding protein [Vibrio cholera CIRS 101]
 gi|259156228|gb|ACV96175.1| IstB domain protein ATP-binding protein [Vibrio cholerae Ban5]
 gi|259156420|gb|ACV96365.1| IstB domain protein ATP-binding protein [Vibrio cholerae Ind5]
          Length = 251

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 40/137 (29%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-----NIWSDKSRSTR 92
           + R D +  S                   ++LVG  G+GK+ LA               R
Sbjct: 89  LHRCDFIQSSQN-----------------IVLVGGPGTGKTHLATALGVQAIQHHQLRVR 131

Query: 93  FSNIAKSLDSILIDTRK------PVLLEDIDLLDFND-----------TQLFHIINSIHQ 135
           F +  + ++++ ++ RK         L  +D++  ++             LFH++  +++
Sbjct: 132 FISTLELVNALELEKRKDQTGRIASRLSGVDVVILDELGYVPFSQHGGALLFHLLAKLYE 191

Query: 136 YDSSLLMTARTFPVSWG 152
             +S+++T       W 
Sbjct: 192 -KTSVIITTNLSFSEWP 207


>gi|224008350|ref|XP_002293134.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971260|gb|EED89595.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 423

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 161 PFKGILLYGPPGTGKSYLAKAVATEADSTFFSVSSADL 198


>gi|226496269|ref|NP_001145759.1| hypothetical protein LOC100279266 [Zea mays]
 gi|219884327|gb|ACL52538.1| unknown [Zea mays]
          Length = 476

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 25/101 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P   ++L GP G GK+ LA+  ++++    +   A  + S +    +             
Sbjct: 222 PVAGLLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRGLFQKAYRT 281

Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144
               V +++ID +           N   + +  +   LMT 
Sbjct: 282 APSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 316


>gi|195047372|ref|XP_001992328.1| GH24269 [Drosophila grimshawi]
 gi|193893169|gb|EDV92035.1| GH24269 [Drosophila grimshawi]
          Length = 522

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 25/101 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR-FSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P R ++L GP GSGK+ LA     ++R    F NI  S+           +L        
Sbjct: 281 PWRSLLLHGPPGSGKTFLAKALYAETRGIVTFFNITASIMVSKWRGESEKIL-------- 332

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV-CLPDLCSR 161
               LFH             M AR  P       +  L SR
Sbjct: 333 --RVLFH-------------MAARRAPSVIFFDEIESLTSR 358


>gi|193215075|ref|YP_001996274.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
 gi|193088552|gb|ACF13827.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC
           35110]
          Length = 700

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G+GK+ LA   + ++ +  FS        + +      + +
Sbjct: 229 VLLVGPPGTGKTLLAKAVAGEAGAPFFSISGSDFVEMFVGVGAARVRD 276


>gi|167648172|ref|YP_001685835.1| ABC transporter-like protein [Caulobacter sp. K31]
 gi|167350602|gb|ABZ73337.1| ABC transporter related [Caulobacter sp. K31]
          Length = 245

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI--DLLD 120
           P   ++L+GPSGSGKS L NI     R+T  S        I +    P  L     D + 
Sbjct: 44  PGETLVLLGPSGSGKSTLLNILGGLDRATSGS---VRFGEIELAGANPAALTRYRRDSVG 100

Query: 121 FNDTQLFHIINSI 133
           F    +F   N +
Sbjct: 101 F----IFQFFNLV 109


>gi|108947452|gb|ABG24029.1| rep [Porcine circovirus 1]
          Length = 312

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLAIETKGGTVPFLARSILITSNQAPQEW 259


>gi|108947455|gb|ABG24031.1| rep [Porcine circovirus 1]
          Length = 312

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLAIETKGGTVPFLARSILITSNQAPQEW 259


>gi|90407805|ref|ZP_01215982.1| putative ATPase protein [Psychromonas sp. CNPT3]
 gi|90311070|gb|EAS39178.1| putative ATPase protein [Psychromonas sp. CNPT3]
          Length = 439

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 23/153 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            +  +  +  +IL GP G+GK+ LA + +    +        ++ + + D R  + +   
Sbjct: 41  KALEAGAAHSMILWGPPGTGKTTLAELIAHYCDAHV--ERLSAVTAGIKDIRAAIEIGKQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
           +      T LF    H  N   Q        D +LL    T              L SR 
Sbjct: 99  NQSRGMRTLLFVDEVHRFNKTQQDAFLPFIEDGTLLFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMF-ADRQIFID 194
             A V  +    +D + +VI +   A   +   
Sbjct: 155 --ARVYLLKKLSEDEIVEVIDQACHAQDGLKAH 185


>gi|34783985|gb|AAH57997.1| Psmc6 protein [Mus musculus]
          Length = 382

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 159 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 210

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 211 ------MFNYARDHQ 219


>gi|50291367|ref|XP_448116.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527427|emb|CAG61067.1| unnamed protein product [Candida glabrata]
          Length = 830

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 50/166 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366

Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181
                       + +PD   RL+   V++I      L DD  LE +
Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLETL 409



 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PS+ V+  GP G+GK+ LA   + +  +                   SNI    D     
Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579

Query: 107 TRKPVLLEDIDLLD 120
               V L+++D + 
Sbjct: 580 APTVVFLDELDSIA 593


>gi|87306773|ref|ZP_01088920.1| cell division protein FtsH [Blastopirellula marina DSM 3645]
 gi|87290952|gb|EAQ82839.1| cell division protein FtsH [Blastopirellula marina DSM 3645]
          Length = 356

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + ++  T FS  A +L   L  +  
Sbjct: 242 VLLVGPPGTGKTLLAKAIAGEAGVTFFSLSALTLSRCLSASAP 284


>gi|302839619|ref|XP_002951366.1| hypothetical protein VOLCADRAFT_41454 [Volvox carteri f.
           nagariensis]
 gi|300263341|gb|EFJ47542.1| hypothetical protein VOLCADRAFT_41454 [Volvox carteri f.
           nagariensis]
          Length = 572

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 47  SAIEQAVRLIDSWP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            A  QA+R + SWP             WP R ++L GP G GK+ L    + ++ +    
Sbjct: 5   PAALQAIRELVSWPVLYGKEGAALGVRWP-RGLLLHGPPGCGKTLLVQAVAAEAGARLHV 63

Query: 95  NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
             A S+        +  L E       +   
Sbjct: 64  VTAASVLGPYTGESERRLREAFARAREDADA 94


>gi|254556460|ref|YP_003062877.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
 gi|254045387|gb|ACT62180.1| recombination factor protein RarA [Lactobacillus plantarum JDM1]
          Length = 449

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 22/155 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLD-- 120
             +I  GP G GK+ LA I + +++S    FS +   +  I     +     D       
Sbjct: 52  PSLIFWGPPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIV 111

Query: 121 -FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
             ++    H  N           +  S  L+ A T   S+ +    L SR K   V+K  
Sbjct: 112 FIDEI---HRFNKAQQDAFLPYVERGSITLIGATTENPSFEINAA-LLSRCK-VLVLKAL 166

Query: 172 LPD--DDFLEKVIV--KMFADRQIFIDKKLAAYIV 202
            P+  +  L+  +   K F D +I +       I 
Sbjct: 167 TPNALEAVLQGALQNPKGFPDLEITMQPDTLRLIA 201


>gi|226533443|ref|NP_001150145.1| vacuolar sorting protein 4b [Zea mays]
 gi|195637104|gb|ACG38020.1| vacuolar sorting protein 4b [Zea mays]
          Length = 435

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R  +L GP G+GKS LA   + ++ ST FS
Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 195


>gi|307152321|ref|YP_003887705.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306982549|gb|ADN14430.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 672

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G+GK+ LA   + ++  T FS  A     + + T    + +
Sbjct: 240 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRD 287


>gi|168025980|ref|XP_001765511.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683361|gb|EDQ69772.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 442

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R  +L GP G+GKS LA   + ++ ST FS
Sbjct: 168 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 199


>gi|153814066|ref|ZP_01966734.1| hypothetical protein RUMTOR_00274 [Ruminococcus torques ATCC 27756]
 gi|317499823|ref|ZP_07958061.1| hypothetical protein HMPREF1026_00003 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087903|ref|ZP_08336827.1| hypothetical protein HMPREF1025_00410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848462|gb|EDK25380.1| hypothetical protein RUMTOR_00274 [Ruminococcus torques ATCC 27756]
 gi|316898725|gb|EFV20758.1| hypothetical protein HMPREF1026_00003 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409390|gb|EGG88836.1| hypothetical protein HMPREF1025_00410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 280

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 18/104 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------IDTRKPV 111
            +L GP G+GKS +A   ++   +   +    + ++I+               +   + +
Sbjct: 113 FLLWGPIGTGKSYIAGCIANALLNREITVKMTNFNTIIDDMFPLEDKTEYINALARYELL 172

Query: 112 LLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWG 152
           +L+D+     ++  L   F +I+  ++    L++T         
Sbjct: 173 ILDDLGTERNSEYALGIVFSVIDRRYRSGRPLIVTTNLPIKQLK 216


>gi|37894600|gb|AAF21428.2|AF165422_1 salt-induced AAA-Type ATPase [Mesembryanthemum crystallinum]
          Length = 434

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R  +L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 163 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDL 200


>gi|45184711|ref|NP_982429.1| AAL113Wp [Ashbya gossypii ATCC 10895]
 gi|44980057|gb|AAS50253.1| AAL113Wp [Ashbya gossypii ATCC 10895]
          Length = 432

 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 213 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 260


>gi|328773026|gb|EGF83063.1| hypothetical protein BATDEDRAFT_18251 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 292

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 35  CLGISRDDLLVHSAIEQAVRLIDSWPS----------WPSRVVILVGPSGSGKSCLANIW 84
              +S +D++   A +QA+R I   P+           P+R V+L GP G+GK+ LA   
Sbjct: 13  KPNVSWEDIVGLDAAKQALREIVVLPNLRPELFTGLRAPARGVLLFGPPGTGKTMLAKAL 72

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           + +S++T FS  A +L S      + ++
Sbjct: 73  AKESKATFFSISASTLTSKYFGEGEKMV 100


>gi|320588158|gb|EFX00633.1| 26S protease regulatory subunit 6a [Grosmannia clavigera kw1407]
          Length = 468

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 38/160 (23%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113
            GP G+GK+ LA   + ++ +T        L  + I     ++                +
Sbjct: 255 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 314

Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158
           +++D +                  +  ++N        D   ++ A          L  L
Sbjct: 315 DELDAVGTKRFDSTKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 372

Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            S RL     ++  LP+++   +++      R++ ID  +
Sbjct: 373 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMKIDAHV 408


>gi|255318063|ref|ZP_05359308.1| ATPase, AAA family [Acinetobacter radioresistens SK82]
 gi|255304886|gb|EET84058.1| ATPase, AAA family [Acinetobacter radioresistens SK82]
          Length = 423

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 31/176 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSILIDTRKP----VLLED 115
             +I  GP G GK+ +A + +        S  A       L  I+ ++       V +++
Sbjct: 43  PSIIFWGPPGVGKTTIALLLAQAVDRPFISLSALNTGVKELREIIAESGDLLTPVVFIDE 102

Query: 116 IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           I   + +      ++N++ +     L+ A T   S+ V    L SR     V  +++ D 
Sbjct: 103 IHRFNKSQQD--ALLNAV-EKGKITLIGATTENPSFEVNGA-LLSR---CQVYTLNILDS 155

Query: 176 DFLEKVIVKMFA------DRQIFID--KKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           + ++ ++ K         +R I I+    L  +           A K ++ +D +A
Sbjct: 156 ESIQTLLDKALQTDEFLKERHIQIEEYDALIQFAA-------GDARKALNLLDLIA 204


>gi|242052161|ref|XP_002455226.1| hypothetical protein SORBIDRAFT_03g006580 [Sorghum bicolor]
 gi|241927201|gb|EES00346.1| hypothetical protein SORBIDRAFT_03g006580 [Sorghum bicolor]
          Length = 436

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P R  +L GP G+GKS LA   + ++ ST FS                 +A        +
Sbjct: 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMAREN 224

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    H  D  L++ A   P +  
Sbjct: 225 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALD 284

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 285 QAVRRRFDKRIYIPLPDLKAR 305


>gi|168047196|ref|XP_001776057.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672567|gb|EDQ59102.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 443

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R  +L GP G+GKS LA   + ++ ST FS
Sbjct: 169 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 200


>gi|154321103|ref|XP_001559867.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10]
 gi|150851964|gb|EDN27156.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10]
          Length = 551

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 42/139 (30%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRK----P 110
           V+LVGP G+GK+ LA   + ++                    AK +  +    +      
Sbjct: 333 VLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEIYVGVGAKRVRELFTAAKGKSPAI 392

Query: 111 VLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWG------ 152
           + ++++D +                  L   ++   Q +  +++ A  FP          
Sbjct: 393 IFIDELDAIGGKRNARDAAYSKQTLNQLLTELDGFAQNNGVIILAATNFPELLDKALTRP 452

Query: 153 --------VCLPDLCSRLK 163
                   V LPD+  RL 
Sbjct: 453 GRFDRNVVVGLPDVRGRLA 471


>gi|126657611|ref|ZP_01728766.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126621067|gb|EAZ91781.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 617

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKTNAPCI 257

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 258 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD    ++++      R   + K +    I +R       
Sbjct: 318 ------LRPGRFDRQVVVDRPDYAGRQEILKVHA--RGKTLSKDVDLDKIARRTP-GFTG 368

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 369 A-DLSNLLNEAAILAARRNLT 388


>gi|145515974|ref|XP_001443881.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411281|emb|CAK76484.1| unnamed protein product [Paramecium tetraurelia]
          Length = 484

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 43/162 (26%)

Query: 55  LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------- 99
           +++ W     + V+L GP G+GK+ LA   + + R+T F+  A S               
Sbjct: 238 ILEPW-----KGVLLFGPPGTGKTMLAKAVATECRTTFFNVQASSVVSKWRGESEKLIRV 292

Query: 100 -LDSILIDTRKPVLLEDIDLL------DFNDTQ---------LFHIINSIHQYDSSLLMT 143
             D         + ++++D +        N+ +         L  +   +       L+ 
Sbjct: 293 LFDLARHYEPSTIFIDEMDSIMGQRGSAGNEHEGGRRMKTELLIQLDGLLKSKKRVFLLA 352

Query: 144 ARTFPVSWGVC-LPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
           A   P    +  L  L  R      + I LPD +  E +I +
Sbjct: 353 ASNLPWDLDIAMLRRLEKR------IYIPLPDQESRESMIRR 388


>gi|22652796|gb|AAN03820.1|AF499028_1 AAA-ATPase-like protein [Oryza sativa Japonica Group]
          Length = 408

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P R  +L GP G+GKS LA   + ++ ST FS                 +A        +
Sbjct: 162 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMAREN 221

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    H  D  L++ A   P +  
Sbjct: 222 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALD 281

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 282 QAVRRRFDKRIYIPLPDLKAR 302


>gi|169771463|ref|XP_001820201.1| AAA family ATPase [Aspergillus oryzae RIB40]
 gi|83768060|dbj|BAE58199.1| unnamed protein product [Aspergillus oryzae]
          Length = 527

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 67/199 (33%), Gaps = 31/199 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111
             +IL G  G+GK+ +A + +    S                   + +   + +  RK +
Sbjct: 150 PSMILWGGPGTGKTTIARVIASMVGSRFVEINSTSSGVAECKKIFSDAKSELNLTGRKTI 209

Query: 112 LL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           +  ++I     +   +F       +     L+ A T   S+ V    L SR        +
Sbjct: 210 IFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQNA-LLSR---CRTFTL 262

Query: 171 SLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
           +   D+ ++ ++ +              +D +L  Y+ +  +     A   ++ ++    
Sbjct: 263 TKLTDEDVKSILDRALQVEGPNYSPSALVDDELINYLAKFSD---GDARTSLNLLELAMD 319

Query: 225 SRGMG-ITRSLAAEVLKET 242
                 IT+      L +T
Sbjct: 320 LSKRPGITKEELKRSLTKT 338


>gi|50120088|ref|YP_049255.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           atrosepticum SCRI1043]
 gi|61211478|sp|Q6D826|CLPX_ERWCT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|49610614|emb|CAG74059.1| ATP-dependent Clp protease ATP-binding subunit [Pectobacterium
           atrosepticum SCRI1043]
          Length = 424

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  S          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDSSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|113972023|ref|YP_735816.1| sporulation domain-containing protein [Shewanella sp. MR-4]
 gi|113886707|gb|ABI40759.1| Sporulation domain protein [Shewanella sp. MR-4]
          Length = 471

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 44/178 (24%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS---DKSRSTRF---------- 93
            + E  V  +    S+  ++++LVG  GSGK+ L    +   D+S +             
Sbjct: 10  PSQEALVERLHHVASYSDQLLVLVGAHGSGKTTLLTALATDFDESNAALVICPMHADNAE 69

Query: 94  ------------------SNIAKSLDSILIDTRKP--VLLEDIDLLDFNDTQLFH---II 130
                              ++A+++  +     KP  ++++D  LL     +L+    I+
Sbjct: 70  IRRKILVQLVSSPIFDDEISLAETILRVAPKQSKPLHIIIDDAHLLS---KELWAECIIL 126

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDL-CSRLKAATVVKISLPD----DDFLEKVIV 183
           N +      + +T    P      LP L  S  +    V I        +   + ++ 
Sbjct: 127 NQVQCAGQRIAVTLAVPPAFLADLLPQLPESLRRQILPVSIDPLSLPEREALYQTLLR 184


>gi|73749380|ref|YP_308619.1| recA protein [Dehalococcoides sp. CBDB1]
 gi|147669989|ref|YP_001214807.1| recA protein [Dehalococcoides sp. BAV1]
 gi|289433338|ref|YP_003463211.1| recA protein [Dehalococcoides sp. GT]
 gi|73661096|emb|CAI83703.1| recA protein [Dehalococcoides sp. CBDB1]
 gi|146270937|gb|ABQ17929.1| recA protein [Dehalococcoides sp. BAV1]
 gi|288947058|gb|ADC74755.1| recA protein [Dehalococcoides sp. GT]
          Length = 337

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 42  DLLVHSAIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           + +  S++   + L +   P    RV  + GP GSGK+ LA     +++          +
Sbjct: 38  EFIPTSSLALDIALGVGGIPR--GRVAEIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDV 95

Query: 101 DSILIDTRKPVLLEDIDLL-----DFNDTQL 126
           +  L          ++D L     D  +  L
Sbjct: 96  EHALDPKYASTCGVNLDELLISQPDTGEEAL 126


>gi|312072869|ref|XP_003139262.1| hypothetical protein LOAG_03677 [Loa loa]
 gi|307765567|gb|EFO24801.1| hypothetical protein LOAG_03677 [Loa loa]
          Length = 435

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 269

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 270 KACLIFFDEIDAVGGARFDDGMGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 330 DPALVRPGRLDRKIEFALPDLAGR 353


>gi|294675887|ref|YP_003576502.1| ATPase AAA [Rhodobacter capsulatus SB 1003]
 gi|294474707|gb|ADE84095.1| ATPase, AAA family [Rhodobacter capsulatus SB 1003]
          Length = 435

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 33/193 (17%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDID 117
            +     VIL GP G GK+ +A + + +S     + S I   +  +            + 
Sbjct: 49  AAGSLGSVILWGPPGVGKTTIARLLAHESDRAFVQISAIFSGVPELRKVFDAA----KLR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
           +     T LF    H  N           +  + LL+  T              L SR +
Sbjct: 105 MGQGRGTLLFVDEIHRFNKAQQDSFLPHMEDGTILLVGATTENPSFELNAA---LLSRAQ 161

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK----- 218
              + ++SL D + L +   +    R + +       +++  +     A  L+++     
Sbjct: 162 VIVLERLSLADLERLAQRAEQAMG-RALPLKAPAREALLEMADGDGRAALNLIEQVMAWK 220

Query: 219 ----MDNLALSRG 227
               +D  AL+  
Sbjct: 221 LPAPLDTEALASR 233


>gi|282895979|ref|ZP_06304010.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
 gi|281199089|gb|EFA73959.1| Peptidase M41, FtsH [Raphidiopsis brookii D9]
          Length = 613

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKSNAPCI 253

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 254 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 313

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD     +++      R   + K +    I +R       
Sbjct: 314 ------LRPGRFDRQVVVDRPDYGGRSEILRVHA--RGKTLSKDVDLDRIARRTP-GFTG 364

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 365 A-DLSNLLNEAAILAARRNLT 384


>gi|255659636|ref|ZP_05405045.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
 gi|260848198|gb|EEX68205.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
          Length = 277

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRS-TRFSNIAKSLDSILIDTRKP 110
           V+ LVGPSG+GKS  A I + K+ +     +     D  ++     
Sbjct: 3   VIALVGPSGTGKSHRALIVAHKNGADAIIDDGILIKDGKILAGHSA 48


>gi|224001990|ref|XP_002290667.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335]
 gi|220974089|gb|EED92419.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335]
          Length = 904

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 13/90 (14%)

Query: 46  HSAIEQAVRLID----SWPSWPS------RVVILVGPSGSGKSCLANIWSDKSRSTRF-- 93
            S +     L++        W        R V+L GPSG GK+ +A   + ++ +  F  
Sbjct: 311 SSHLAAVRELVELPLKHPELWTKLGINTPRGVLLTGPSGCGKTAMARAVAAETGAYFFVI 370

Query: 94  -SNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
                 S  +   +T      ED +    +
Sbjct: 371 NGPEVISKRAGESETNLRRAFEDAEANAPD 400



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS+ V+  GP G GK+ +A   +++  +   S
Sbjct: 615 PSKGVLFYGPPGCGKTLMAKAIANECGANFIS 646


>gi|170097387|ref|XP_001879913.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645316|gb|EDR09564.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 603

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 29/136 (21%)

Query: 50  EQAVRLIDSWPSW------PSRVVIL-VGPSGSGKSCLANIWSDKSR---------STRF 93
             A   +D   +W      P R   L  GP G+GKS   +  + +           +   
Sbjct: 253 GDAREFLDM-ENWYIDAGIPHRRGYLLYGPPGTGKSSTIHALAGELGMEIYSLSLAAGFV 311

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            +      +  I  R   L+EDID    +  +         ++   LL     +P   G+
Sbjct: 312 DDSFLQRAAASIPKRAIFLIEDIDCAFPSREE--------GEHPMPLL---PGYPGMMGL 360

Query: 154 CLPDLCSRLKAATVVK 169
             P L SR ++   + 
Sbjct: 361 G-PRLPSRTRSTVTLS 375


>gi|145344785|ref|XP_001416905.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577131|gb|ABO95198.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 408

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P++ V+L GP G+GK+ LA   + +SR+   +  + +L
Sbjct: 120 PAKGVLLYGPPGTGKTLLAKALAKESRACFINVRSSTL 157


>gi|134097009|ref|YP_001102670.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006245|ref|ZP_06564218.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909632|emb|CAL99744.1| putative cell division protein [Saccharopolyspora erythraea NRRL
           2338]
          Length = 795

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 62/197 (31%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSWPSRV----------VIL 69
           K+K +QL    P           V  A E    L  I  +   P R           V+L
Sbjct: 135 KSKAKQLTKDMP-KTLFGD----VAGADEAVEELHEIKDFLQNPGRYQALGAKIPKGVLL 189

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VLL 113
            GP G+GK+ LA   + ++    +S        + +                     V +
Sbjct: 190 YGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKQNAPCIVFV 249

Query: 114 EDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSW------- 151
           ++ID +               +  L  +   ++        +L+ A   P          
Sbjct: 250 DEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFDSRGGIILIAATNRPDILDPALLRP 309

Query: 152 -------GVCLPDLCSR 161
                   V  PDL  R
Sbjct: 310 GRFDRQIPVSAPDLRGR 326


>gi|124516172|gb|EAY57680.1| Vesicle-fusing ATPase [Leptospirillum rubarum]
          Length = 579

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 20/192 (10%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G GK+ +A   ++           +   S  +  + P LL     +  +
Sbjct: 260 PPKGVLLYGPPGCGKTLIAKAVANSVGRRMEQVHGQDARSYFLHVKGPELLNKY--VGES 317

Query: 123 DTQLFHIINSIHQ---YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-ISLPDD-DF 177
           + Q+  +     +       +++        +      + S +++  V + ++  D  + 
Sbjct: 318 ERQIREVFARAREKAREGVPVIVFFDEMDSLFRTRGSGVSSDMESTIVPQFLAEIDGVER 377

Query: 178 LEKVIVKMFADRQIFIDKKLAAY----IVQRMER-SLVFAEKLVDKMDNLALSRGMGITR 232
           L  VIV   ++RQ  ID  +       +  R++R +   A+ +  K    A         
Sbjct: 378 LRNVIVIGASNRQDLIDPAILRPGRLDVRVRIDRPNEAKAKMIFAKYFRAA--------I 429

Query: 233 SLAAEVLKETQQ 244
            L+ EVL +  Q
Sbjct: 430 PLSREVLSQFGQ 441


>gi|7141245|gb|AAF37267.1|AF220406_1 26S proteasome regulatory ATPase subunit S10b [Vitis riparia]
          Length = 197

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 83  PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 134


>gi|47205942|emb|CAF93631.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 389

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|20140283|sp|Q9KDI8|RUVB_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 333

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L+ I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLSTIIANELGVQMRTTSGPAIERPGDLAAILTALEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N + + 
Sbjct: 114 -HRLNRMVEE 122


>gi|15613820|ref|NP_242123.1| recombination factor protein RarA [Bacillus halodurans C-125]
 gi|10173873|dbj|BAB04976.1| BH1257 [Bacillus halodurans C-125]
          Length = 428

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 56/146 (38%), Gaps = 22/146 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR---------FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  + +             ++   ++   +  +  ++L+++ 
Sbjct: 43  MILYGPPGVGKTSIAQAIAGSTDTHYKLLNAVVNNKKDMEIVVEEAKMSGQLILILDEVH 102

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+          L++   T    +    P + SR     + +++    
Sbjct: 103 RLDKGKQDFLLPHL------EKGLLILIGATTANPFHSINPAIRSR---CQIFELTPLTT 153

Query: 176 DFLEKVIVKMFADR--QIFIDKKLAA 199
           D ++  + +   D+   +  +  + +
Sbjct: 154 DEIKVALTRALTDKTHGLGEEPVVIS 179


>gi|158312162|ref|YP_001504670.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
 gi|158107567|gb|ABW09764.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec]
          Length = 753

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 39/208 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 201 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 260

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 261 IFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 320

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L   R     VV    PD     + I+K+ A +   I   +   I+ R       A  
Sbjct: 321 --LRPGRFDRQIVV--DRPD-LLGREAILKVHA-KGKPISSDVDMLIIARRTPGFTGA-D 373

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
           L + ++  AL       R +++ +L+E+
Sbjct: 374 LANVLNEAALLAARSDVRFISSALLEES 401


>gi|328767147|gb|EGF77198.1| hypothetical protein BATDEDRAFT_91915 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 377

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + V+L GP G GK+ LA   + +S +   +    +L  
Sbjct: 142 PPKGVLLYGPPGCGKTMLAKALAKESGACFINLHVSTLTE 181


>gi|324516307|gb|ADY46490.1| 26S protease regulatory subunit 7 [Ascaris suum]
          Length = 436

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 211 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 270

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 271 KACLIFFDEIDAVGGARFDDGMGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 330

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 331 DPALVRPGRLDRKIEFALPDLAGR 354


>gi|320105914|ref|YP_004181504.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4]
 gi|319924435|gb|ADV81510.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4]
          Length = 639

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 43/196 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 192 VLLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCI 251

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++     D  +L+ A   P      L
Sbjct: 252 IFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNDGVILVAATNRPDVLDPAL 311

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD    E+V+      +++ + + +   ++ R       A
Sbjct: 312 ------LRPGRFDRRVMVGRPDVRGREEVLRVHA--KKVPLSEDVNLNVLARGTPGFSGA 363

Query: 213 EKLVDKMDNLALSRGM 228
             L + ++  AL+   
Sbjct: 364 -DLANMVNEAALAAAR 378


>gi|237815625|ref|ZP_04594622.1| recombination factor protein RarA [Brucella abortus str. 2308 A]
 gi|237788923|gb|EEP63134.1| recombination factor protein RarA [Brucella abortus str. 2308 A]
          Length = 457

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 69  ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 124

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 125 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 179

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +        + +D +  A +++  +     A  L +++  
Sbjct: 180 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 238

Query: 222 L 222
            
Sbjct: 239 A 239


>gi|229367834|gb|ACQ58897.1| 26S protease regulatory subunit S10B [Anoplopoma fimbria]
          Length = 389

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|255099320|ref|ZP_05328297.1| ABC transporter, ATP-binding protein [Clostridium difficile
           QCD-63q42]
 gi|255305154|ref|ZP_05349326.1| ABC transporter, ATP-binding protein [Clostridium difficile ATCC
           43255]
          Length = 220

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 49/144 (34%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V++VG SGSGKS L +I                +  +   T   V++++I++   ++ +
Sbjct: 35  FVVIVGKSGSGKSTLLHI----------------MAGLETPTNGDVIIDNINISSLDEKK 78

Query: 126 -----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
                      +F   N I      +L       V   + LP           + I   D
Sbjct: 79  RSALRKEKLGLIFQSYNLI-----PVL------TVEENIKLP----------TINIKNKD 117

Query: 175 DDFLEKVIVKM-FADRQIFIDKKL 197
           + ++ +++  +   DR++++  +L
Sbjct: 118 EAYINELMELLGIKDRRMYLPNQL 141


>gi|169829332|ref|YP_001699490.1| hypothetical protein Bsph_3886 [Lysinibacillus sphaericus C3-41]
 gi|168993820|gb|ACA41360.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 420

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 31/211 (14%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR- 89
                  +   D +         ++I    +     ++L G  G GK+ +AN  +  S+ 
Sbjct: 3   PLTLDEIVGHQDFI--GPNTALYKMI---QNEHVPSMLLYGEPGIGKTSIANAIAGSSQL 57

Query: 90  --------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSS 139
                        ++   +    I  +  + L++I   +    DT L H+ N       S
Sbjct: 58  PFFALNATRAGKKDVEDIVQEARISGKVLLFLDEIHRFNKLQQDTLLPHVEN------GS 111

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQI-----F 192
           +++   T    +    P + SR     + ++     + L +++ K  AD  R +      
Sbjct: 112 IVLIGATTENPYHDVNPAIRSR--CGEIYQLKRLTKENLMELVEKALADEKRGLGKYHFI 169

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +       I +        A  L++ +   +
Sbjct: 170 LTDSQIERIAEAANGDARKALTLLESIYYAS 200


>gi|116794435|gb|ABK27142.1| unknown [Picea sitchensis]
          Length = 439

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R  +L GP G+GKS LA   + ++ ST +S
Sbjct: 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFYS 196


>gi|152995071|ref|YP_001339906.1| PhoH family protein [Marinomonas sp. MWYL1]
 gi|150835995|gb|ABR69971.1| PhoH family protein [Marinomonas sp. MWYL1]
          Length = 468

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A  L+       S ++++ GP+GSGK+ LA  +       + +   K  + I++    
Sbjct: 266 AMAFYLLRHD---NSDLMVMTGPAGSGKTLLALAY-----GLQVTMEEKRFNKIIVARST 317

Query: 110 PVLLEDIDLLDFNDTQ 125
           P + EDI  L   + +
Sbjct: 318 PPMAEDIGFLPGTEEE 333


>gi|108760934|ref|YP_630152.1| hypothetical protein MXAN_1907 [Myxococcus xanthus DK 1622]
 gi|108464814|gb|ABF89999.1| hypothetical protein MXAN_1907 [Myxococcus xanthus DK 1622]
          Length = 1260

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 74/217 (34%), Gaps = 45/217 (20%)

Query: 55  LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF------SNIAKSLDSILIDTR 108
           L+D       RV++L GPS  GK+ LA   +   ++  F         A     +  +  
Sbjct: 259 LLDRLRD--KRVLLLTGPSRCGKTFLAKWLAQAQQNRGFEIRRGDPQEATRFLLLAGEFD 316

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQ------YDSSLLMTA-----RTFPVSWGVCLPD 157
           +  ++E+          +     ++ Q          L++TA     R    + G+  P 
Sbjct: 317 RLFIIENAFEQAAASGTVRQTWEAVEQVIRELPEHCLLIVTASKESLRDMLDADGIPTP- 375

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI----------FIDKKLAAYI-----V 202
               ++    V +++ D     ++  K      +           +   +  ++     +
Sbjct: 376 ----MEGFPWVDLTVRDPALANRIWQKHAELAGLSEVERERYSAHLRALVPDFLVQPGQL 431

Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGIT-RSLAAEV 238
           + + R+    E  ++ +D         +   +LAAEV
Sbjct: 432 RHLARNFPKGETRLEDLD-----SKARVNAIALAAEV 463


>gi|148656547|ref|YP_001276752.1| Holliday junction DNA helicase RuvB [Roseiflexus sp. RS-1]
 gi|166231550|sp|A5UVZ9|RUVB_ROSS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|148568657|gb|ABQ90802.1| Holliday junction DNA helicase RuvB [Roseiflexus sp. RS-1]
          Length = 347

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 27/205 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P    +L GP G GK+ LA + + +           +++           L+  D+L  +
Sbjct: 53  PLDHTLLYGPPGLGKTSLAGVLAAEMGVNIKLTSGPAIERAGDLAALLTNLQKDDILFID 112

Query: 123 DTQLFHIINSIHQ-------YDSSL-LMTARTF-PVSWGVCLPD------------LCS- 160
           +    H +N   +        D +L +M  +     S  + LP             L S 
Sbjct: 113 EI---HRLNRAIEEVLYPAMEDFALDIMVGKGPGARSLRLKLPRFTVIGATTRLALLTSP 169

Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            R +  +V ++     D L +++++      +    + A  I  R   +     +L+ ++
Sbjct: 170 LRDRFGSVHRLEFYSVDALYQIVMRSARILGVDCTPEGAHEIAARARGTPRIVNRLLRRV 229

Query: 220 -DNLALSRGMGITRSLAAEVLKETQ 243
            D   +     IT   A + L + +
Sbjct: 230 RDYAQVVGNGVITLETARDALAKLE 254


>gi|17987067|ref|NP_539701.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           16M]
 gi|17982724|gb|AAL51965.1| atpase associated with chromosome architecture/replication
           [Brucella melitensis bv. 1 str. 16M]
          Length = 457

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 69  ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 124

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 125 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 179

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +        + +D +  A +++  +     A  L +++  
Sbjct: 180 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 238

Query: 222 L 222
            
Sbjct: 239 A 239


>gi|73748445|ref|YP_307684.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. CBDB1]
 gi|147669225|ref|YP_001214043.1| Holliday junction DNA helicase B [Dehalococcoides sp. BAV1]
 gi|97190027|sp|Q3ZWZ9|RUVB_DEHSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046030|sp|A5FRK7|RUVB_DEHSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|73660161|emb|CAI82768.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. CBDB1]
 gi|146270173|gb|ABQ17165.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. BAV1]
          Length = 349

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR----FSNIAKSLDSILIDTR----KPVLLEDIDL 118
           V+L GP G GK+ L++I + +            I +  D   I T       + +++I  
Sbjct: 59  VLLYGPPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHR 118

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD----------------LCSR 161
           L  N  ++ +      +  +  +M  +     S  + LP                 L  R
Sbjct: 119 LSRNVEEVLYP---AMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDR 175

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
             +  + ++   D++ +  ++ +      +  D+     I  R   +   A +L+ ++ +
Sbjct: 176 FGS--IFRLDFYDEEAIHDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRD 233

Query: 222 LALSRGMG-ITRSLAAEVLK 240
            A  +G G IT  +AAE L 
Sbjct: 234 YAQVKGNGLITADIAAESLA 253


>gi|330958181|gb|EGH58441.1| recombination factor protein RarA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 440

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 36/212 (16%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +   +  A       I     V  +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVAKQQA 99

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA--------EK 214
             A V  +   D+  L K++     +R +  DK L  + ++  E               +
Sbjct: 155 --ARVYVLKSLDEAALRKLV-----NRALTEDKGLGQHKLRLSEEGFAMLMAAADGDGRR 207

Query: 215 LVDKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           +++ ++N + L+  G  I   L   +L ++++
Sbjct: 208 MLNLLENASDLAEDGSEIDIELLQSLLGDSRR 239


>gi|331090669|ref|ZP_08339518.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400083|gb|EGG79734.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 440

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL---LDFND 123
           +I  GPSG+GK+ LA + ++ + +      A       ++     ++E       +    
Sbjct: 55  IIFYGPSGTGKTTLAKVIANTTSAEFMQMNATIAGKKDMEA----VIEQAKNNLGMYGKR 110

Query: 124 TQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N           +  + +L+ A T    + V    L SR   ++V ++ 
Sbjct: 111 TILFIDEIHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGA-LISR---SSVFELK 166

Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYI 201
             + + ++ ++ +   D        +  ID+    ++
Sbjct: 167 PLEREDIKILLKRAVYDTEKGMGTYRAEIDEDALEFL 203


>gi|325973631|ref|YP_004250695.1| holliday junction ATP-dependent DNA helicase, RuvB [Mycoplasma suis
           str. Illinois]
 gi|325990083|ref|YP_004249782.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma suis
           KI3806]
 gi|323575168|emb|CBZ40830.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma suis]
 gi|323652233|gb|ADX98315.1| holliday junction ATP-dependent DNA helicase, RuvB [Mycoplasma suis
           str. Illinois]
          Length = 319

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P    +L GP G GK+ LA I +++         + ++ ++         L D D+L  +
Sbjct: 39  PLEHTLLYGPPGVGKTSLAQIIANEMEVNIKIVPSTNIQTLPDLIGILNSLNDFDVLFID 98

Query: 123 DT 124
           + 
Sbjct: 99  EI 100


>gi|300718476|ref|YP_003743279.1| glutamine ABC transporter ATP-binding protein [Erwinia billingiae
           Eb661]
 gi|299064312|emb|CAX61432.1| Glutamine ABC transporter, ATP-binding protein [Erwinia billingiae
           Eb661]
          Length = 257

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P     ++GPSGSGKS L             + + +     ++   + VL E+ D L   
Sbjct: 45  PGTTTCIIGPSGSGKSTLLR---------GINRLHEPKSGDVLLAGRSVLKENPDALRLR 95

Query: 123 DTQLFHIINSIHQY 136
              +F   N    +
Sbjct: 96  IGMVFQHFNLFPDH 109


>gi|291410705|ref|XP_002721627.1| PREDICTED: fidgetin-like 1 [Oryctolagus cuniculus]
          Length = 677

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 16/84 (19%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDS---WP----------SWPSRVVILVGPSGSGKS 78
                 +S +D+   + +E A   I     WP            P + ++L GP G+GK+
Sbjct: 395 LDHGPPVSWEDI---AGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKT 451

Query: 79  CLANIWSDKSRSTRFSNIAKSLDS 102
            +    + +S +T FS  A SL S
Sbjct: 452 LIGKCIASQSGATFFSISASSLTS 475


>gi|256827685|ref|YP_003151644.1| Holliday junction DNA helicase, RuvB subunit [Cryptobacterium
           curtum DSM 15641]
 gi|256583828|gb|ACU94962.1| Holliday junction DNA helicase, RuvB subunit [Cryptobacterium
           curtum DSM 15641]
          Length = 342

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G GK+ LA + +++  +   +    ++            LED D+L  ++   
Sbjct: 62  ILFSGPPGLGKTTLATVVANEMGAHIKTTSGPAIARTGDLAAILTNLEDGDVLFIDEI-- 119

Query: 127 FHIINSIHQY 136
            H +N + + 
Sbjct: 120 -HRMNRMVEE 128


>gi|257784236|ref|YP_003179453.1| ABC transporter-like protein [Atopobium parvulum DSM 20469]
 gi|257472743|gb|ACV50862.1| ABC transporter related [Atopobium parvulum DSM 20469]
          Length = 286

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 20/73 (27%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           WP  VV+++GPSGSGKS +                   ++ +   +   +L+ED ++   
Sbjct: 69  WPGEVVVVLGPSGSGKSTMLRC----------------INLLETPSAGHILIEDQEITGT 112

Query: 122 NDTQLFHIINSIH 134
           N+ ++    N++ 
Sbjct: 113 NEAEV----NALR 121


>gi|255070529|ref|XP_002507346.1| AAA ATPase [Micromonas sp. RCC299]
 gi|226522621|gb|ACO68604.1| AAA ATPase [Micromonas sp. RCC299]
          Length = 770

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           P+  ++L GPSGSGKS LA +      +   S+   S    LI   K  L+
Sbjct: 238 PAPHIVLAGPSGSGKSLLAQLL-----ARIISDHDVSRHGPLIKASKNDLI 283


>gi|226309710|ref|YP_002769604.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
 gi|226092658|dbj|BAH41100.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
          Length = 648

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 47/214 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 265 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGGNEGIIMIAATNRPDILDPAL 324

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD    E V+      R   I + +   ++ R       A
Sbjct: 325 ------LRPGRFDRQITVDRPDIKGREAVLKVHA--RNKPIGEDVKLEVIARGTSGFTGA 376

Query: 213 EKLVDKMDNLAL----SRGMGITRSLAAEVLKET 242
             L + ++  AL         IT +   E +   
Sbjct: 377 -DLENLLNEAALLTARRNKKQITMTEVDEAIDRV 409


>gi|224014850|ref|XP_002297087.1| vacuolar protein sorting-associated protein [Thalassiosira
           pseudonana CCMP1335]
 gi|220968467|gb|EED86815.1| vacuolar protein sorting-associated protein [Thalassiosira
           pseudonana CCMP1335]
          Length = 423

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 161 PFKGILLYGPPGTGKSYLAKAVATEADSTFFSVSSADL 198


>gi|219116749|ref|XP_002179169.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409060|gb|EEC48992.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 421

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 48/188 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT--------------RKPVL 112
           V+L GP G+GK+ LA   +    +T    +A ++    I                 +P +
Sbjct: 202 VLLYGPPGTGKTLLARALASNISATFLKVVASAIVDKYIGESARIIREMFGFARDHEPCV 261

Query: 113 L--EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCL 155
           +  ++ID +  +               L  ++N      +     ++ A   P      L
Sbjct: 262 IFMDEIDAIGGSRFSEGTSADREIQRTLMELLNQMDGFEEQGQVKMVMATNRPDILDPAL 321

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L   RL     ++I  P++    +++    +             I +R +       K
Sbjct: 322 --LRPGRLD--RKIEIPEPNESQRLEILKIHASG------------ITKRGDIDFESVVK 365

Query: 215 LVDKMDNL 222
           L D ++  
Sbjct: 366 LADGLNGA 373


>gi|213963197|ref|ZP_03391454.1| ATPase, AAA family [Capnocytophaga sputigena Capno]
 gi|213954059|gb|EEB65384.1| ATPase, AAA family [Capnocytophaga sputigena Capno]
          Length = 425

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
            +I  GP G+GK+ LANI + +S    ++  A S
Sbjct: 39 PSLIFWGPPGTGKTTLANIIAHQSNRAFYTLSAIS 73


>gi|241204199|ref|YP_002975295.1| recombination factor protein RarA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858089|gb|ACS55756.1| AAA ATPase central domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 438

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 67/188 (35%), Gaps = 31/188 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111
           R+I+   S     +I  GP G+GK+ +A + S ++     + S I   +  +        
Sbjct: 47  RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFETA- 102

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
               +  +D   T LF    H  N           +  + +L+  T              
Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215
           L SR   A V+     D++ LE+++ +     Q  + + +     +++  +        L
Sbjct: 157 LLSR---ARVLTFKSHDEESLEELLKRAETIEQKPLPLTEDARVSLIRMADGDGRAVLTL 213

Query: 216 VDKMDNLA 223
            +++   A
Sbjct: 214 AEEVWRAA 221


>gi|153852824|ref|ZP_01994261.1| hypothetical protein DORLON_00243 [Dorea longicatena DSM 13814]
 gi|149754466|gb|EDM64397.1| hypothetical protein DORLON_00243 [Dorea longicatena DSM 13814]
          Length = 271

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 20/116 (17%)

Query: 52  AVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDK-----------SRSTRFSNIAK 98
           A   +D+W       +  +  GP G+GKS +A   +++           + +T   +I  
Sbjct: 97  AKSYVDNWEEMKRNHIGCLFWGPVGTGKSYIAGCIANELLKQEVTVKMTNFNTIIDDIFP 156

Query: 99  SLDSI----LIDTRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTF 147
             D       + + + ++++D+ +   ++  L   F +I+   +    L++T    
Sbjct: 157 LADKTEYINALASYQLLIIDDLGVERNSEYALGIIFSVIDRRIRSGRPLIITTNLP 212


>gi|114762565|ref|ZP_01442009.1| putative transposase [Pelagibaca bermudensis HTCC2601]
 gi|114544820|gb|EAU47825.1| putative transposase [Roseovarius sp. HTCC2601]
          Length = 237

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLA-NIWSD------KSRSTRFSNIAKSLDSILID---TRKPVLL 113
            R V+L+G +G+GKS LA +I         + R     ++   LD+        R   LL
Sbjct: 93  QRNVVLIGGTGTGKSHLAVSIARACIRRGKRGRFFNVVDLVNKLDAEARADRQGRTADLL 152

Query: 114 EDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
             +D L  ++             LFH+I+ +++  +S+++T       W 
Sbjct: 153 CRLDFLILDELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 201


>gi|15234242|ref|NP_194498.1| MSP1 protein, putative / intramitochondrial sorting protein,
           putative [Arabidopsis thaliana]
 gi|4469019|emb|CAB38280.1| putative protein [Arabidopsis thaliana]
 gi|7269622|emb|CAB81418.1| putative protein [Arabidopsis thaliana]
 gi|20260328|gb|AAM13062.1| putative protein [Arabidopsis thaliana]
 gi|21553404|gb|AAM62497.1| 26S proteasome regulatory particle chain RPT6-like protein
           [Arabidopsis thaliana]
 gi|23197836|gb|AAN15445.1| putative protein [Arabidopsis thaliana]
 gi|110740771|dbj|BAE98483.1| hypothetical protein [Arabidopsis thaliana]
 gi|332659980|gb|AEE85380.1| 26S proteasome regulatory particle chain RPT6-like protein
           [Arabidopsis thaliana]
          Length = 398

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 149


>gi|114053003|ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus]
 gi|119390895|sp|Q2KIW6|PRS10_BOVIN RecName: Full=26S protease regulatory subunit 10B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
           Full=Proteasome 26S subunit ATPase 6
 gi|86827363|gb|AAI12483.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Bos taurus]
          Length = 389

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|28175479|gb|AAH43044.1| Psmc6 protein [Mus musculus]
          Length = 390

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 167 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 218

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 219 ------MFNYARDHQ 227


>gi|45361531|ref|NP_989342.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
           (Silurana) tropicalis]
 gi|39850228|gb|AAH64227.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
           (Silurana) tropicalis]
 gi|89266829|emb|CAJ83423.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
           (Silurana) tropicalis]
          Length = 389

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|22538114|ref|NP_688965.1| recombination factor protein RarA [Streptococcus agalactiae
           2603V/R]
 gi|76799348|ref|ZP_00781508.1| ATPase, AAA family [Streptococcus agalactiae 18RS21]
 gi|22535021|gb|AAN00838.1|AE014281_7 ATPase, AAA family [Streptococcus agalactiae 2603V/R]
 gi|76585295|gb|EAO61893.1| ATPase, AAA family [Streptococcus agalactiae 18RS21]
          Length = 422

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +        +T      + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++K I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKKAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|326433811|gb|EGD79381.1| hypothetical protein PTSG_09791 [Salpingoeca sp. ATCC 50818]
          Length = 463

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 26/110 (23%)

Query: 28  LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS-- 85
           L  S          +L V  AI QA       P   +R ++L GP G+GK+ LA   +  
Sbjct: 217 LPLSLQHENAH---ELCVS-AITQA-----RLPGATARRILLFGPPGTGKTTLAVHAALA 267

Query: 86  ---------------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
                          + + + +   IA +           V+L+D++ L 
Sbjct: 268 SSPDYLKVIRASDLVELTDAHKSQRIAAAFRDAEKAKHAVVVLDDLERLA 317


>gi|320528059|ref|ZP_08029225.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204]
 gi|320131685|gb|EFW24249.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204]
          Length = 619

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + +S    FS        + +                     
Sbjct: 206 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRSLFKDAKEKAPCI 265

Query: 111 VLLEDIDLLDF----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +            ++      QL   ++     +  +++ A   P +     
Sbjct: 266 VFIDEIDAIGGKRNAGNFGGNDEREQTLNQLLTEMDGFEGNNGIVVLAATNRPENLDPAL 325

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 326 LRPGRFDRRVPVELPDLQGR 345


>gi|299472663|emb|CBN78315.1| ATP-binding cassette superfamily [Ectocarpus siliculosus]
          Length = 1982

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 16/82 (19%)

Query: 62   WPSRVVILVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILIDTR 108
            W   V  ++GPSG+GK+ L N+ + +             + + R +  A +   +     
Sbjct: 1397 WSGSVTAIMGPSGAGKTTLLNVLAGRMHRLGKKNNGGRVTGAVRINGRAVTAAEVRG-VS 1455

Query: 109  KPVLLEDI--DLLDFNDTQLFH 128
              V  ED+  + L   +  +FH
Sbjct: 1456 GYVTQEDVLPETLTCFEHLMFH 1477


>gi|299144251|ref|ZP_07037331.1| cell division protein FtsH [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518736|gb|EFI42475.1| cell division protein FtsH [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 623

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 45/140 (32%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 218 ALLVGPPGTGKTLLAKAVAGEADVPFFSISGSEFVEMFVGLGAAKVRDLFKQAHEKAPCI 277

Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++     D  +++ A   P S     
Sbjct: 278 VFIDEIDTIGKRRDGAGISGNDEREQTLNQLLSEMDGFEGNDGVVILAATNRPESLDPAL 337

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 338 LRPGRFDRRIPVELPDLAGR 357


>gi|282901690|ref|ZP_06309606.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
 gi|281193453|gb|EFA68434.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505]
          Length = 613

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKSNAPCI 253

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 254 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 313

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD     +++      R   + K +    I +R       
Sbjct: 314 ------LRPGRFDRQVVVDRPDYGGRSEILRVHA--RGKTLSKDVDLDRIARRTP-GFTG 364

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 365 A-DLSNLLNEAAILAARRNLT 384


>gi|238610683|ref|XP_002397785.1| hypothetical protein MPER_01728 [Moniliophthora perniciosa FA553]
 gi|215472970|gb|EEB98715.1| hypothetical protein MPER_01728 [Moniliophthora perniciosa FA553]
          Length = 226

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 16/75 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILID 106
           P R V+L GP G GK+ LAN  + +                        + ++ D     
Sbjct: 85  PPRGVLLHGPPGCGKTLLANAIAGELGVPFVNISAPSIVSGMSGESEKGLREAFDEAKRV 144

Query: 107 TRKPVLLEDIDLLDF 121
               + +++ID +  
Sbjct: 145 APSLLFIDEIDAITG 159


>gi|206602971|gb|EDZ39451.1| Vesicle-fusing ATPase [Leptospirillum sp. Group II '5-way CG']
          Length = 579

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 20/192 (10%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V+L GP G GK+ +A   ++           +   S  +  + P LL     +  +
Sbjct: 260 PPKGVLLYGPPGCGKTLIAKAVANSVGRRMEQVHGQDARSYFLHVKGPELLNKY--VGES 317

Query: 123 DTQLFHIINSIHQ---YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-ISLPDD-DF 177
           + Q+  +     +       +++        +      + S +++  V + ++  D  + 
Sbjct: 318 ERQIREVFARAREKAREGVPVIVFFDEMDSLFRTRGSGVSSDMESTIVPQFLAEIDGVER 377

Query: 178 LEKVIVKMFADRQIFIDKKLAAY----IVQRMER-SLVFAEKLVDKMDNLALSRGMGITR 232
           L  VIV   ++RQ  ID  +       +  R++R +   A+ +  K    A         
Sbjct: 378 LRNVIVIGASNRQDLIDPAILRPGRLDVRVRIDRPNEAKAKMIFAKYFRAA--------I 429

Query: 233 SLAAEVLKETQQ 244
            L+ EVL +  Q
Sbjct: 430 PLSREVLSQFGQ 441


>gi|194386940|dbj|BAG59836.1| unnamed protein product [Homo sapiens]
          Length = 667

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95
           P R V+L GP G GK+ LA+  +    S   + 
Sbjct: 81  PPRGVLLHGPPGCGKTLLAHAIAGAECSGMITA 113


>gi|148665712|gb|EDK98128.1| mCG129012 [Mus musculus]
          Length = 255

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + VIL GP G+GK+ LA   ++++  T    +   L
Sbjct: 198 PPKEVILYGPPGTGKTLLAKAVANQTSGTFLRVVGSEL 235


>gi|226694319|sp|Q6NW58|SPAST_DANRE RecName: Full=Spastin
 gi|34539797|gb|AAQ74774.1| spastin [Danio rerio]
 gi|220673063|emb|CAX13091.1| spastin [Danio rerio]
          Length = 570

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A +L S  +   + ++
Sbjct: 327 PARGLLLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLV 376


>gi|28278099|gb|AAH45087.1| Psmc6 protein [Xenopus laevis]
          Length = 403

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 232 ------MFNYARDHQ 240


>gi|89896820|ref|YP_520307.1| hypothetical protein DSY4074 [Desulfitobacterium hafniense Y51]
 gi|89336268|dbj|BAE85863.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 611

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 67/219 (30%), Gaps = 60/219 (27%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           D L   +   A+         P   + LVGP G+GK+ LA   + +++   FS       
Sbjct: 188 DFLHDPSRYAAIG-----ADLPKGAL-LVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFV 241

Query: 102 SILIDTRKP----------------VLLEDIDLL----------DFNDT------QLFHI 129
            + +                     V +++ID +            ND       QL   
Sbjct: 242 EMFVGMGAAKVRDLFKQANEKAPCIVFIDEIDTIGKKRDGGSFGGGNDEREQTLNQLLSE 301

Query: 130 INSIHQYDSSLLMTARTFPVSW--------------GVCLPDLCSR---LK-AATVVKIS 171
           ++        +++ A   P S                V LPDL  R   L+     VK+ 
Sbjct: 302 MDGFDGKKGVVILAATNRPESLDKALLRPGRFDRRIPVELPDLAGREAILRVHGQKVKMD 361

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ--RMERS 208
            P D   + +           +   +    ++  R  RS
Sbjct: 362 SPID--FKAIARATAGASGAELANIINEGALRAVRCGRS 398


>gi|116205431|ref|XP_001228526.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51]
 gi|88176727|gb|EAQ84195.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51]
          Length = 587

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 33/180 (18%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94
           LV         LI+S        +IL G SG+GK+ +A   + +                
Sbjct: 178 LVGP-NGVLRSLIESDR---VPSMILWGGSGTGKTTIARCIARRVGCRFIELNATSTGVA 233

Query: 95  ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                 A++ + + +  R+ ++  ++I   +     +F       +  +  L+ A T   
Sbjct: 234 ECKKLFAEAANELGLTGRRTIIFCDEIHRFNKGQQDVFL---KPVEAGTITLIGATTENP 290

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA----DRQIFIDK----KLAAYI 201
           S+ V    L SR        +    +D ++ ++++          + +      +L  Y+
Sbjct: 291 SFRVQAA-LLSR---CRTFTLQSLTEDDIQHILLRALQQEVEQEGLELSPLIDQELLRYL 346


>gi|219667350|ref|YP_002457785.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
 gi|219537610|gb|ACL19349.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense
           DCB-2]
          Length = 608

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 67/219 (30%), Gaps = 60/219 (27%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           D L   +   A+         P   + LVGP G+GK+ LA   + +++   FS       
Sbjct: 185 DFLHDPSRYAAIG-----ADLPKGAL-LVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFV 238

Query: 102 SILIDTRKP----------------VLLEDIDLL----------DFNDT------QLFHI 129
            + +                     V +++ID +            ND       QL   
Sbjct: 239 EMFVGMGAAKVRDLFKQANEKAPCIVFIDEIDTIGKKRDGGSFGGGNDEREQTLNQLLSE 298

Query: 130 INSIHQYDSSLLMTARTFPVSW--------------GVCLPDLCSR---LK-AATVVKIS 171
           ++        +++ A   P S                V LPDL  R   L+     VK+ 
Sbjct: 299 MDGFDGKKGVVILAATNRPESLDKALLRPGRFDRRIPVELPDLAGREAILRVHGQKVKMD 358

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ--RMERS 208
            P D   + +           +   +    ++  R  RS
Sbjct: 359 SPID--FKAIARATAGASGAELANIINEGALRAVRCGRS 395


>gi|326469781|gb|EGD93790.1| sister chromatid cohesion factor [Trichophyton tonsurans CBS
           112818]
          Length = 873

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 29  FFSFP--RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
              FP      + +D+     +        DS      ++++L GP G GK+ LA+I + 
Sbjct: 154 PIVFPGLAKPKVKKDNF----SN-------DSEERAHRKILLLTGPPGLGKTTLAHICAK 202

Query: 87  KSRSTRFSNIAKSLDSILIDTRK 109
           +         A    S  + T +
Sbjct: 203 QVGYEVLEINASDERSRTVVTGR 225


>gi|325290187|ref|YP_004266368.1| Chromosomal replication initiator DnaA [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965588|gb|ADY56367.1| Chromosomal replication initiator DnaA [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 198

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 24/154 (15%)

Query: 44  LVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANIWSDKSR------------ 89
            + +  E A + +D +   + P + VI+ G  G GKS L      K +            
Sbjct: 2   FISTFNEVAFKALDRFSMENGP-QTVIIYGDDGVGKSELLKSLYHKMQNEPYRTIYYQAE 60

Query: 90  ------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSL 140
                 +   S          +      +L+D+  L        +LF+  +SI       
Sbjct: 61  KFSREFAYTLSAGRIKAFRNKVRKADLFILDDLHKLTGKQRTIEELFYTYDSIILQGGKF 120

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
            ++     +S+        SRL ++  + +  P+
Sbjct: 121 AISCSGLHLSFAYLGERFASRLLSSVSIPVFQPE 154


>gi|297297860|ref|XP_001082028.2| PREDICTED: 26S protease regulatory subunit S10B-like [Macaca
           mulatta]
          Length = 409

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 186 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 237

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 238 ------MFNYARDHQ 246


>gi|282162727|ref|YP_003355112.1| cell division control protein 48 [Methanocella paludicola SANAE]
 gi|282155041|dbj|BAI60129.1| cell division control protein 48 [Methanocella paludicola SANAE]
          Length = 760

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           V+L GP G+GK+ LA   +++S++   +     L
Sbjct: 522 VLLYGPPGTGKTLLAKAIANESQANFITAKGSDL 555


>gi|302916237|ref|XP_003051929.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732868|gb|EEU46216.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 808

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 552 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 601


>gi|170590440|ref|XP_001899980.1| Probable 26S protease regulatory subunit 7 [Brugia malayi]
 gi|158592612|gb|EDP31210.1| Probable 26S protease regulatory subunit 7, putative [Brugia
           malayi]
          Length = 435

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 269

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 270 KACLIFFDEIDAVGGARFDDGMGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 330 DPALVRPGRLDRKIEFALPDLSGR 353


>gi|145334803|ref|NP_001078747.1| ATP binding / nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|332008889|gb|AED96272.1| putative ATP binding protein [Arabidopsis thaliana]
          Length = 829

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 550 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 581


>gi|148225468|ref|NP_001090469.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
           laevis]
 gi|67677964|gb|AAH97594.1| MGC114813 protein [Xenopus laevis]
          Length = 389

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|19113998|ref|NP_593086.1| AAA family ATPase Vps4 (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|1173445|sp|Q09803|VPS4_SCHPO RecName: Full=Suppressor protein of bem1/bed5 double mutants
 gi|496311|gb|AAA35347.1| supressor protein [Schizosaccharomyces pombe]
 gi|1019404|emb|CAA91171.1| AAA family ATPase Vps4 (predicted) [Schizosaccharomyces pombe]
          Length = 432

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   ++L GP G+GKS LA   + ++ ST FS
Sbjct: 161 PWSGILLYGPPGTGKSYLAKAVATEAGSTFFS 192


>gi|328885709|emb|CCA58948.1| IstB ATP-binding protein [Streptomyces venezuelae ATCC 10712]
          Length = 250

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 34/145 (23%)

Query: 64  SRVVILVGPSGSGKSCLANI-------------WSDKSRSTRF------SNIAKSLDSIL 104
              ++L G  G+GK+  A               W   + +  +      + +        
Sbjct: 101 GPSLLLWGNVGTGKTHQAYAAIRALTASGCGVSWHATTAADLYGDTRPQAGVDLEHQLRR 160

Query: 105 IDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVS------WGVCL 155
           I     +LL+D+       + +  LF ++N   Q     + T    PV           L
Sbjct: 161 IVRVPLLLLDDVGAAKTSAWTEEVLFRLVNWRCQNQLPTIFTTNLPPVRDLADSPSQPVL 220

Query: 156 PDLC-----SRLKA-ATVVKISLPD 174
            DL      SR+    T V+ + PD
Sbjct: 221 RDLVGDRVLSRMSGMCTPVRFTGPD 245


>gi|319746115|gb|EFV98389.1| AAA family ATPase [Streptococcus agalactiae ATCC 13813]
          Length = 422

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +        +T      + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++K I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKKAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|319949375|ref|ZP_08023444.1| ATP-dependent protease FtsH [Dietzia cinnamea P4]
 gi|319436958|gb|EFV92009.1| ATP-dependent protease FtsH [Dietzia cinnamea P4]
          Length = 738

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 49/206 (23%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 204 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEKAKQNAP 263

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             V +++ID +            D  +  L  +   ++      + +L+ A   P     
Sbjct: 264 CIVFVDEIDAVGRHRGSGTGGGHDEREQTLNQLLVEMDGFDDRSTVILIAATNRPDVLDP 323

Query: 154 CL--------------PDLCSR--LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            L              PDL  R  + A   V   L  D  +  +  +        +   L
Sbjct: 324 ALLRPGRFDRQVPVTNPDLKGREAILAVHSVGKPLAADVDMTSLARRTIGMSGADLANVL 383

Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221
              A +  R+ R  +  E L +  D 
Sbjct: 384 NEGALLAARLGRDEIDIEILEEATDR 409


>gi|321261730|ref|XP_003195584.1| ATPase [Cryptococcus gattii WM276]
 gi|317462058|gb|ADV23797.1| ATPase, putative [Cryptococcus gattii WM276]
          Length = 439

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R ++L GP G+GKS LA   + +++ST FS  +  L
Sbjct: 165 PWRGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDL 202


>gi|303241603|ref|ZP_07328102.1| Holliday junction DNA helicase RuvB [Acetivibrio cellulolyticus
           CD2]
 gi|302590823|gb|EFL60572.1| Holliday junction DNA helicase RuvB [Acetivibrio cellulolyticus
           CD2]
          Length = 330

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I + +           +++           L + D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLASIIASELGVNIRITSGPAIEKPGDLAAILTNLGNYDVLFIDEI-- 112

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 113 -HRLNRSVEE 121


>gi|297803328|ref|XP_002869548.1| hypothetical protein ARALYDRAFT_492017 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315384|gb|EFH45807.1| hypothetical protein ARALYDRAFT_492017 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 398

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 149


>gi|241955559|ref|XP_002420500.1| ATPase of the AAA family, putative; ribosome biogenesis ATPase,
           putative; ribosome export protein, putative [Candida
           dubliniensis CD36]
 gi|223643842|emb|CAX41579.1| ATPase of the AAA family, putative [Candida dubliniensis CD36]
          Length = 830

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+ V++  GP G GK+ LA   +++SR+   S
Sbjct: 559 PAGVLM-WGPPGCGKTLLAKAVANESRANFIS 589


>gi|198413872|ref|XP_002128188.1| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit,
           ATPase 2 [Ciona intestinalis]
          Length = 433

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 62/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + ++L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGILLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P               LPDL  R K   + KI                  R + +++ +
Sbjct: 328 DPALMRPGRMDRKVEFGLPDLEGRTK---IFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     +
Sbjct: 369 RYELLARLCPNSTGAEIRSVCTEAGMYAIRARRKV 403


>gi|51493662|gb|AAU04844.1| netropsin resistance protein subunit 1 [Streptomyces netropsis]
          Length = 618

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 16/64 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V LVGP+GSGKS L ++                L+      +  VL++ +D  +++
Sbjct: 389 PGATVALVGPTGSGKSTLLHL----------------LNHTYAPDQGRVLIDGVDAAEWD 432

Query: 123 DTQL 126
              L
Sbjct: 433 QASL 436


>gi|1526426|dbj|BAA11338.1| proteasome subunit p42 [Homo sapiens]
          Length = 389

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|330833626|ref|YP_004402451.1| multidrug ABC transporter ATP-binding protein [Streptococcus suis
           ST3]
 gi|329307849|gb|AEB82265.1| multidrug ABC transporter, ATP-binding protein [Streptococcus suis
           ST3]
          Length = 545

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 73/193 (37%), Gaps = 29/193 (15%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            +  +++G SGSGKS LA I    +++++       +D   +       ++D       +
Sbjct: 362 GKKYLILGESGSGKSSLALI---LTKNSQLQAGDIYVDKTSLSDLSYQAIQDKIAYLPQE 418

Query: 124 TQLFH---IINSIHQYDSSLLMTARTFPV---SWGVCLPDLCSRLKAATVVKISLPDDDF 177
             LFH   + N             R  P     + +   +L SR  +   +   + DD  
Sbjct: 419 GSLFHDTVLYNLTM---------GREIPEDRLMFLIKTMNLDSRFPSYASLSEEISDDSG 469

Query: 178 LEKVI-VKMFADRQIFIDKKLAAYIVQRMERSLVFA-EKLVDKMDNL--ALSRGM--GIT 231
           L      ++   R +  DK +   ++  ++ SL    ++    ++N   +L+      I+
Sbjct: 470 LSGGQKQRLLLIRALLQDKDI---LL--LDESLSALDQETYAVIENYLTSLADKTLIHIS 524

Query: 232 RSLAAEVLKETQQ 244
             ++ EVL     
Sbjct: 525 HRMSEEVLSRYDG 537


>gi|328860463|gb|EGG09569.1| hypothetical protein MELLADRAFT_47487 [Melampsora larici-populina
           98AG31]
          Length = 440

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R ++L GP G+GKS LA   + +++ST FS  +  L
Sbjct: 165 PWRGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDL 202


>gi|330470412|ref|YP_004408155.1| adenosinetriphosphatase [Verrucosispora maris AB-18-032]
 gi|328813383|gb|AEB47555.1| adenosinetriphosphatase [Verrucosispora maris AB-18-032]
          Length = 777

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 68/191 (35%), Gaps = 37/191 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDTRKP 110
           V++ GP+GSGKS L    + +  +   +  A  +                  ++ D    
Sbjct: 300 VLVSGPAGSGKSALVRAVAAQVGARVHALWAPEIAALSNSSAAARLRATTAEVIADGPAV 359

Query: 111 VLLEDIDLLDFNDT-----QLF-HIINSIHQYDSSLLMTARTFPVSWGVCL-PDLCSRLK 163
           +L+ D++ L   DT      +F   +  I Q  ++++ T             PDL S   
Sbjct: 360 LLVTDVEALAPADTPGPVATVFRQCLAQIVQAGAAVVCTTSRPEALDPAMRAPDLLS--- 416

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               + + LPD     + +  +   R + +   +      R++         V   D  A
Sbjct: 417 --LRIDVPLPDAALRREQLTVL--TRPVPLADDV------RLDEVAGRTPGFVAA-DLAA 465

Query: 224 LSRGMGITRSL 234
           L R  GI  +L
Sbjct: 466 LVREAGIRAAL 476



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GP G GK+ L    +   R+   S     L S  +   +  + E        
Sbjct: 549 PPRGVLLYGPPGCGKTYLVTALAGSGRANVLSVKGAELLSKWVGESERAVRE-------- 600

Query: 123 DTQLFHIINSIHQYDSSLLM 142
                 +     +   +L+ 
Sbjct: 601 ------LFRRAQEAAPTLVF 614


>gi|326485261|gb|EGE09271.1| sister chromatid cohesion factor [Trichophyton equinum CBS 127.97]
          Length = 908

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 29  FFSFP--RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86
              FP      + +D+     +        DS      ++++L GP G GK+ LA+I + 
Sbjct: 189 PIVFPGLAKPKVKKDNF----SN-------DSEERAHRKILLLTGPPGLGKTTLAHICAK 237

Query: 87  KSRSTRFSNIAKSLDSILIDTRK 109
           +         A    S  + T +
Sbjct: 238 QVGYEVLEINASDERSRTVVTGR 260


>gi|322701840|gb|EFY93588.1| intermembrane space AAA protease IAP-1 [Metarhizium acridum CQMa
           102]
          Length = 740

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 60/195 (30%), Gaps = 63/195 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110
           V+LVGP G+GK+ LA   + ++    F       D I +                     
Sbjct: 293 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFAAAKAKSPAI 352

Query: 111 VLLEDIDLLDF-----NDT-------QLFHIINSIHQYDSSLLMTARTFPVSW------- 151
           + ++++D +       +         QL   ++   Q    ++M A   P          
Sbjct: 353 IFIDELDAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDTKIIIMGATNLPNLLDKALTRP 412

Query: 152 -------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQ 203
                   V LPD+  RL                   I+K  A + I     +    I  
Sbjct: 413 GRFDRHINVDLPDVRGRL------------------AILKHHAKK-IKAAPDVDLDAIAA 453

Query: 204 RME-RSLVFAEKLVD 217
           R   RS    E +++
Sbjct: 454 RSPGRSGAELENMLN 468


>gi|298241820|ref|ZP_06965627.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297554874|gb|EFH88738.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 626

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 50/214 (23%)

Query: 51  QAVRLIDSWPSWPSRVVI---------------LVGPSGSGKSCLANIWSDKSRSTRF-- 93
            A+  +D   SW    +I               LVGP G+GK+      + +        
Sbjct: 328 AALGGMDHLTSWARSELIEPLTRGLDDVPKGVLLVGPPGTGKTYFVRALAKEVGFNAVML 387

Query: 94  --------------SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ------LFHIINSI 133
                         + + +  +     T   V  +++D  D +           ++ N +
Sbjct: 388 RTENILSKYVGESENKLKRFFEFARALTPVLVFFDELDQSDMSSRGSESNPVARNLFNQM 447

Query: 134 HQ-------YDSSLLMTARTFPVSWGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKM 185
            Q           +   A   P      L  L   R+ A   V +  P+++   +++   
Sbjct: 448 LQFMSDETLRGKMVAFFASNRPDLIDQAL--LRFGRMDAVIPVLL--PNEEARARIVRAQ 503

Query: 186 FADRQIFIDKKLAAYIVQRM-ERSLVFAEKLVDK 218
              + I I  +    I  R  + S      +V K
Sbjct: 504 AKGQAIAITNEAVTIIATRSNDYSAADIAAVVAK 537


>gi|261417027|ref|YP_003250710.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373483|gb|ACX76228.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325461|gb|ADL24662.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 345

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 64/173 (36%), Gaps = 28/173 (16%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHI 129
            GP G GK+ L++I + +            L+           L++ D+L  ++    H 
Sbjct: 61  AGPPGLGKTTLSSIIAKEMGVNIHITSGPVLEKASDLAGLLTSLQENDILFIDEI---HR 117

Query: 130 INSIHQ-------YDSSLLMTARTFPVSWGVCLPDL----------CS-------RLKAA 165
           +N + +        D  L +   + P +  V LP L           S       R +  
Sbjct: 118 LNRVVEEYLYPAMEDFRLDIMLDSGPAARSVNLP-LKHFTLVGATTRSGLLTGPLRDRFG 176

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
              ++ L ++  + K++++      + + ++ A  +  R   +   A +++ +
Sbjct: 177 LQYRLELYNEKDIVKILMRSARILGVELSEEAAKILGGRCRGTPRVANRVLRR 229


>gi|225627677|ref|ZP_03785714.1| recombination factor protein RarA [Brucella ceti str. Cudo]
 gi|225617682|gb|EEH14727.1| recombination factor protein RarA [Brucella ceti str. Cudo]
 gi|326409226|gb|ADZ66291.1| recombination factor protein RarA [Brucella melitensis M28]
          Length = 457

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 69  ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 124

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 125 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 179

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +        + +D +  A +++  +     A  L +++  
Sbjct: 180 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 238

Query: 222 L 222
            
Sbjct: 239 A 239


>gi|255565587|ref|XP_002523783.1| Vacuolar protein sorting-associated protein VPS4, putative [Ricinus
           communis]
 gi|223536871|gb|EEF38509.1| Vacuolar protein sorting-associated protein VPS4, putative [Ricinus
           communis]
          Length = 431

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R  +L GP G+GKS LA   + ++ ST FS
Sbjct: 160 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 191


>gi|20090664|ref|NP_616739.1| hypothetical protein MA1813 [Methanosarcina acetivorans C2A]
 gi|19915711|gb|AAM05219.1| hypothetical protein MA_1813 [Methanosarcina acetivorans C2A]
          Length = 764

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           V+L GP G+GK+ LA   + +S +   +     L
Sbjct: 526 VLLYGPPGTGKTLLAKAIAHESDANFITAKGSDL 559



 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 28/117 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   +++S +   S                 I +  +    +    
Sbjct: 253 VLLQGPPGTGKTMLAKAVANESDAYFISINGPEIMSKYYGESERAIREIFEDAEKNAPAI 312

Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + L++ID +                 QL  +++ +    + +++ A   P +  + L
Sbjct: 313 IFLDEIDSIAPKRAEVTGEVERRVVAQLLSLMDGLKARKNVIVIGATNRPEALDIAL 369


>gi|68637431|emb|CAF21818.1| recombinase A [Weissella minor]
          Length = 190

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 64  SRVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
            R++ + GP  SGK+ LA +  ++  ++        + ++I ++  + + + D+D L  +
Sbjct: 24  GRIMEIYGPESSGKTTLALHAAAEAQKAGGIVAYIDAENAIDVEYARALGV-DVDELLLS 82

Query: 123 D 123
            
Sbjct: 83  Q 83


>gi|17563248|ref|NP_506005.1| proteasome Regulatory Particle, ATPase-like family member (rpt-1)
           [Caenorhabditis elegans]
 gi|2492520|sp|Q18787|PRS7_CAEEL RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit rpt-1; AltName:
           Full=Proteasome 26S subunit ATPase 2
 gi|3875191|emb|CAB01414.1| C. elegans protein C52E4.4, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 435

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 270 KACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 330 DPALMRPGRLDRKVEFALPDLAGR 353


>gi|324506772|gb|ADY42884.1| 26S protease regulatory subunit 10B [Ascaris suum]
          Length = 449

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ ++    I     ++ E        
Sbjct: 226 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIRE-------- 277

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 278 ------MFNYARDHQ 286


>gi|311104419|ref|YP_003977272.1| magnesium chelatase subunit ChlI family protein 1 [Achromobacter
           xylosoxidans A8]
 gi|310759108|gb|ADP14557.1| magnesium chelatase, subunit ChlI family protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 446

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 20/179 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G GK+ LA + +D   +   +  A  +   + D R  V +  +       T L
Sbjct: 55  MIFWGPPGVGKTTLARLMADGFDAQFIAISA--VLGGVKDIRDAVTVAQVAQGQGRRTIL 112

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAATVVK 169
           F    H  N           +      + A T   S+ V    L SR     L++ T  +
Sbjct: 113 FVDEVHRFNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSA-LLSRARVYVLQSLTAEE 171

Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
           +    D  ++ +   +    +I +D      +    +         V+ +   A + G 
Sbjct: 172 LQQLVDRAVQALNDGLEEGERIHVDADAREQLAAWADGDARRLISAVEVVAESAQAAGR 230


>gi|308481279|ref|XP_003102845.1| hypothetical protein CRE_29903 [Caenorhabditis remanei]
 gi|308260931|gb|EFP04884.1| hypothetical protein CRE_29903 [Caenorhabditis remanei]
          Length = 352

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G GK+ LA   +  +     +
Sbjct: 116 PPRGILLYGPPGCGKTLLAKAVARAAGCRFIN 147


>gi|308451925|ref|XP_003088853.1| hypothetical protein CRE_14423 [Caenorhabditis remanei]
 gi|308245130|gb|EFO89082.1| hypothetical protein CRE_14423 [Caenorhabditis remanei]
          Length = 364

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G GK+ LA   +  +     +
Sbjct: 116 PPRGILLYGPPGCGKTLLAKAVARAAGCRFIN 147


>gi|308186247|ref|YP_003930378.1| hypothetical protein Pvag_0727 [Pantoea vagans C9-1]
 gi|308056757|gb|ADO08929.1| Uncharacterized protein [Pantoea vagans C9-1]
          Length = 447

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 36/198 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I +    +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERA----RQNKHAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSL--VFAEKLVDKMDNLA--- 223
                + +E+V+ +   D  R       +     +RM   L    A + ++ ++ +A   
Sbjct: 163 KSLTAEDIEQVLDQAMQDKARGYGDSDIVLPDNTRRMIAELVNGDARRALNTLEMMADMA 222

Query: 224 ---LSRGMGITRSLAAEV 238
               S    +T  L  EV
Sbjct: 223 EITASGQRELTPQLLNEV 240


>gi|227328282|ref|ZP_03832306.1| DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 374

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
            P  +  + D+ L   +      L+       S  ++L GP G GK+ LA+  + +    
Sbjct: 94  LPAAVQENVDEFLSFISKA---HLLSEAGVGISPSMMLYGPPGCGKTQLAHHIAARLELP 150

Query: 92  RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
             +    +L S  + +    L    D        LF
Sbjct: 151 LITARCDTLISSFLGSTAKNLRSLFDHAASRPCVLF 186


>gi|224031823|gb|ACN34987.1| unknown [Zea mays]
          Length = 391

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 119 PQKGVLLYGPPGTGKTMLAKAIARESGAVFIN 150


>gi|224105063|ref|XP_002313671.1| predicted protein [Populus trichocarpa]
 gi|222850079|gb|EEE87626.1| predicted protein [Populus trichocarpa]
          Length = 431

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R  +L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 160 PWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDL 197


>gi|297201308|ref|ZP_06918705.1| ATP-binding protein [Streptomyces sviceus ATCC 29083]
 gi|197712831|gb|EDY56865.1| ATP-binding protein [Streptomyces sviceus ATCC 29083]
          Length = 491

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 61/199 (30%), Gaps = 42/199 (21%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLF--FSFPRCLGISRD-DLLVHSAIEQ-------AVRLI 56
            +   VPD ++    +    QL      P      +  DLL+             A+  +
Sbjct: 123 GWDITVPDPREVSWRRT---QLTGELPLPAKDTNGKGIDLLMRLCNFANAETECLAIAWL 179

Query: 57  --DSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
                PS P     L GP G+GKS     L  I    S   R +   +      +     
Sbjct: 180 IGCLGPSVPVPAPFLTGPQGAGKSTGGRMLVRIIEGMSGDLRRAPKDEENLIAAVAAGWV 239

Query: 111 VLLEDIDLLDFN---------------DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVC 154
             L+++  +  +                  LF   +         LL+T     +  GV 
Sbjct: 240 TALDNLSHMTPDLSDAMCCIVTGAENVKRALFTDGDVFRVGYRRPLLLTG----IDVGVI 295

Query: 155 LPDLCSRLKAATVVKISLP 173
            PDL  RL     +++  P
Sbjct: 296 RPDLAERL---LPLRLERP 311


>gi|195585855|ref|XP_002082694.1| GD25099 [Drosophila simulans]
 gi|194194703|gb|EDX08279.1| GD25099 [Drosophila simulans]
          Length = 603

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D +L+    
Sbjct: 251 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 293


>gi|218248318|ref|YP_002373689.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257060355|ref|YP_003138243.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218168796|gb|ACK67533.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256590521|gb|ACV01408.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 673

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 54/218 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++  T FS  A     + + T                   
Sbjct: 246 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCI 305

Query: 111 VLLEDIDLLDF------------ND-----TQLFHIINSIHQYDSSL-LMTARTFPVSWG 152
           + ++++D +              ++      QL   ++  +  D+++ ++ A   P +  
Sbjct: 306 IFIDELDAIGKSRSGGNSLSGSNDEREQTLNQLLTEMDGFNAGDATVIVLAATNRPETLD 365

Query: 153 VCL--------------PDLCSRLKAATVV--KISLPDDDFLEKVIVKMFADRQIFIDKK 196
             L              PDL  RL    +   KI L +   L+ +  +        +   
Sbjct: 366 PALLRPGRFDRQVLVDRPDLAGRLAILEIYVKKIQLGEGVNLKDLATQTPGFAGADLANL 425

Query: 197 L--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230
           +  AA +  R +R  V      + ++     L +   +
Sbjct: 426 VNEAALLAARNQRDYVTQRDFKEAIERVIAGLEKKSRV 463


>gi|118396729|ref|XP_001030702.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89285014|gb|EAR83039.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 354

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           P R ++L GP G+GK+ +A   + +S +T ++  A  +DSIL
Sbjct: 145 PPRGILLFGPPGNGKTLIAKAVATESNATFYNISANEIDSIL 186


>gi|45552965|ref|NP_996009.1| smallminded, isoform B [Drosophila melanogaster]
 gi|45446020|gb|AAS65065.1| smallminded, isoform B [Drosophila melanogaster]
          Length = 850

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA   S +
Sbjct: 189 PSRGLLLHGPPGCGKTFLARAISGQ 213



 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 602 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 650


>gi|21226406|ref|NP_632328.1| AAA ATPase family protein [Methanosarcina mazei Go1]
 gi|20904664|gb|AAM30000.1| AAA family ATPase [Methanosarcina mazei Go1]
          Length = 372

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 22/85 (25%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-------------------RSTRFSNIA 97
           + +  W  R ++  GPSG+GK+ LA   ++K+                    + +   + 
Sbjct: 146 ERFGKWAPRNILFFGPSGTGKTMLAKALANKTDVPLIPVKATQLIGEYVGDGARQIHQLY 205

Query: 98  KSLDSILIDTRKPVLLEDIDLLDFN 122
              + +       + ++++D +  +
Sbjct: 206 DRAEEM---APCIIFIDELDAIALD 227


>gi|27754103|ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus]
 gi|126290027|ref|XP_001365047.1| PREDICTED: similar to conserved ATPase domain protein 44
           [Monodelphis domestica]
 gi|194034456|ref|XP_001928782.1| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa]
 gi|51702772|sp|P62333|PRS10_HUMAN RecName: Full=26S protease regulatory subunit 10B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
           Full=Proteasome 26S subunit ATPase 6; AltName:
           Full=Proteasome subunit p42
 gi|55977306|sp|P62334|PRS10_MOUSE RecName: Full=26S protease regulatory subunit 10B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
           Full=Proteasome 26S subunit ATPase 6; AltName:
           Full=Proteasome subunit p42
 gi|59800155|sp|P62335|PRS10_SPETR RecName: Full=26S protease regulatory subunit 10B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
           Full=Conserved ATPase domain protein 44; Short=CADp44;
           AltName: Full=Proteasome 26S subunit ATPase 6; AltName:
           Full=Proteasome subunit p42
 gi|1045497|gb|AAB40354.1| conserved ATPase domain protein 44 [Spermophilus tridecemlineatus]
 gi|2213932|gb|AAB61616.1| 26S proteasome regulatory subunit [Homo sapiens]
 gi|12848757|dbj|BAB28078.1| unnamed protein product [Mus musculus]
 gi|13529266|gb|AAH05390.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
           sapiens]
 gi|30582525|gb|AAP35489.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
           sapiens]
 gi|48145535|emb|CAG32990.1| PSMC6 [Homo sapiens]
 gi|61361236|gb|AAX42017.1| proteasome 26S subunit 6 [synthetic construct]
 gi|61361244|gb|AAX42018.1| proteasome 26S subunit 6 [synthetic construct]
 gi|74185083|dbj|BAE39144.1| unnamed protein product [Mus musculus]
 gi|74194908|dbj|BAE26034.1| unnamed protein product [Mus musculus]
 gi|109733764|gb|AAI16753.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
           musculus]
 gi|111601154|gb|AAI19169.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
           musculus]
 gi|119586049|gb|EAW65645.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
           sapiens]
 gi|123994057|gb|ABM84630.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
           construct]
 gi|148688745|gb|EDL20692.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform
           CRA_b [Mus musculus]
 gi|189053915|dbj|BAG36422.1| unnamed protein product [Homo sapiens]
 gi|208967156|dbj|BAG73592.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
           construct]
 gi|296483635|gb|DAA25750.1| 26S protease regulatory subunit S10B [Bos taurus]
          Length = 389

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|148547066|ref|YP_001267168.1| recombination factor protein RarA [Pseudomonas putida F1]
 gi|148511124|gb|ABQ77984.1| Recombination protein MgsA [Pseudomonas putida F1]
          Length = 441

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +    +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +LL    T              L SR 
Sbjct: 99  AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R + +       ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEARGLGKRNLRVGDDAFKMLMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   +   +L ++++
Sbjct: 210 NFLENASDLAEDGSEIDVEMLQSLLGDSRR 239


>gi|326501604|dbj|BAK02591.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 986

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + V+L GP G+GK+ LA   + ++ +   S    +L S
Sbjct: 729 PCKGVLLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 768


>gi|295395336|ref|ZP_06805537.1| AAA-family ATPase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971795|gb|EFG47669.1| AAA-family ATPase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 329

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 33/156 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF---------------SNIAKSLDSILIDT 107
           P++ ++L GP G+GK+  A + + +     F               +   + +   + +T
Sbjct: 120 PAQRLLLTGPPGTGKTTTAQVIAAELNLPLFTVRLDSMITKFMGATAAKLRLIFDAIAET 179

Query: 108 RKPVLLEDIDLLDFNDTQ---------LFHIINSIHQYDS--SLLMTARTFPVSWGVCLP 156
           R     +++D L  +            + +      + D   SL++TA   P      L 
Sbjct: 180 RGVYFFDEVDALAGDRAAANDVGEIRRVLNSFLQFLEEDISDSLIITATNHPQLLDKAL- 238

Query: 157 DLCSRLKAA-TVVKISLPDDDFLEKVIVKMFADRQI 191
                 +   T ++  LPDD+ ++ VI    A  QI
Sbjct: 239 -----FRRVDTTLEFDLPDDEGIKSVIKNRLATFQI 269


>gi|253687444|ref|YP_003016634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259491264|sp|C6DB56|CLPX_PECCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|251754022|gb|ACT12098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 424

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  S          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDSSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|296814720|ref|XP_002847697.1| vacuolar sorting protein 4b [Arthroderma otae CBS 113480]
 gi|238840722|gb|EEQ30384.1| vacuolar sorting protein 4b [Arthroderma otae CBS 113480]
          Length = 815

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 571 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASSLAS 610


>gi|229009575|ref|ZP_04166802.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides DSM
           2048]
 gi|229053912|ref|ZP_04195347.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH603]
 gi|229131073|ref|ZP_04259986.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|229165054|ref|ZP_04292850.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH621]
 gi|228618439|gb|EEK75468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH621]
 gi|228652410|gb|EEL08334.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST196]
 gi|228721453|gb|EEL72973.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH603]
 gi|228751719|gb|EEM01518.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus mycoides DSM
           2048]
          Length = 612

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENVNLRAIATRTP-GFSG 347

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 348 A-DLENLLNEAALVAAR 363


>gi|222423365|dbj|BAH19655.1| AT5G52882 [Arabidopsis thaliana]
          Length = 829

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 550 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 581


>gi|213965130|ref|ZP_03393328.1| Cell division protease FtsH homolog [Corynebacterium amycolatum
           SK46]
 gi|213952244|gb|EEB63628.1| Cell division protease FtsH homolog [Corynebacterium amycolatum
           SK46]
          Length = 894

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 63/199 (31%), Gaps = 45/199 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    ++        + +                   
Sbjct: 202 RGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEMFVGVGASRVRDLFNQAKENSP 261

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++        ++M A   P     
Sbjct: 262 CIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGDRQGVIIMAATNRPDILDP 321

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM-ERSL 209
            L      L+       + +  PD    E ++     ++ +  D  L + + +R    S 
Sbjct: 322 AL------LRPGRFDRQIPVGAPDLKGREAILKVHARNKPLGPDADLTS-LAKRTAGMSG 374

Query: 210 VFAEKLVDKMDNLALSRGM 228
              + +   ++  AL    
Sbjct: 375 ADLQNV---LNEAALLTAR 390


>gi|20091847|ref|NP_617922.1| AAA family ATPase [Methanosarcina acetivorans C2A]
 gi|19917038|gb|AAM06402.1| ATPase, AAA family [Methanosarcina acetivorans C2A]
          Length = 372

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 16/82 (19%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------- 109
           + +  W  R ++  GPSG+GK+ LA   ++K+        A  L    +           
Sbjct: 146 ERFGKWAPRNILFFGPSGTGKTMLAKALANKTDVPIIPVKATQLIGEYVGDGARQIHQLY 205

Query: 110 ---------PVLLEDIDLLDFN 122
                     + ++++D +  +
Sbjct: 206 DRAEEMSPCIIFIDELDAIALD 227


>gi|163938073|ref|YP_001642957.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis
           KBAB4]
 gi|163860270|gb|ABY41329.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis
           KBAB4]
          Length = 633

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENVNLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 369 A-DLENLLNEAALVAAR 384


>gi|71001884|ref|XP_755623.1| mitochondrial AAA ATPase [Aspergillus fumigatus Af293]
 gi|66853261|gb|EAL93585.1| mitochondrial AAA ATPase, putative [Aspergillus fumigatus Af293]
          Length = 952

 Score = 39.7 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 681 PGLLLYGPPGTGKTLLAKAVARESGATVLE 710


>gi|327398236|ref|YP_004339105.1| IstB domain-containing protein ATP-binding protein [Hippea maritima
           DSM 10411]
 gi|327180865|gb|AEA33046.1| IstB domain protein ATP-binding protein [Hippea maritima DSM 10411]
          Length = 205

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L+GPSG+GK+ LA      +   R      ++  +       + LE  +  +  D+ +
Sbjct: 101 ILLIGPSGTGKTHLAIAIGYAAAQHRIKTKFITMADL------AITLEAAETQNRLDSYI 154

Query: 127 FHIINSIH 134
             +INS  
Sbjct: 155 KKVINSAR 162


>gi|315585800|gb|ADU40181.1| tRNA isopentenyltransferase [Helicobacter pylori 35A]
          Length = 312

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 15/124 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL-DSILIDTRKPVLLED------ 115
           P +++ L+GPSGSGKS L+   + +  +  FS  + S+   I I + KP L E       
Sbjct: 12  PKKLIALLGPSGSGKSTLSTELAQELDAEIFSLDSLSIYKDINIASAKPSLKERKNIKHY 71

Query: 116 -IDLLDFND---TQLFH--IINSIHQYDSSLLMTARTFPVSWGVCLPDLCS--RLKAATV 167
            +D L+ ++     LF   + +++      +L+            L  L S  +L    V
Sbjct: 72  ALDYLNIDEKNNASLFKTLLEDAMRVSSKEVLLIVGGSSFYLKSILEGLSSMPKLSGEEV 131

Query: 168 VKIS 171
           VKI 
Sbjct: 132 VKIE 135


>gi|295135714|ref|YP_003586390.1| recombination factor protein RarA [Zunongwangia profunda SM-A87]
 gi|294983729|gb|ADF54194.1| recombination factor protein RarA [Zunongwangia profunda SM-A87]
          Length = 424

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 24/149 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +I  GP G GK+ LANI +++S                       AK  D +      
Sbjct: 40  PSMIFWGPPGVGKTTLANIIANESDRPFFTLSAISSGVKDVREVIEKAKRSDGLFTTKSP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L        +     L+ A T   S+ V    L SR     V 
Sbjct: 100 ILFIDEIHRFSKSQQDSLL----GAVEKGWVTLIGATTENPSFEVISA-LLSR---CQVY 151

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            +     + L  ++ +   + +I   K +
Sbjct: 152 VLKPFSKEDLIALLNRAMKEDKIIASKNI 180


>gi|303272823|ref|XP_003055773.1| proteasomal ATPase [Micromonas pusilla CCMP1545]
 gi|226463747|gb|EEH61025.1| proteasomal ATPase [Micromonas pusilla CCMP1545]
          Length = 399

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 170 PPKGVLLYGPPGTGKTLLAKAIASNIDANFLKVVSSAIVDKYIGESARLIRE 221


>gi|195338165|ref|XP_002035696.1| GM14837 [Drosophila sechellia]
 gi|194128789|gb|EDW50832.1| GM14837 [Drosophila sechellia]
          Length = 944

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           PSR ++L GP G GK+ LA   S +
Sbjct: 281 PSRGLLLHGPPGCGKTFLARAISGQ 305



 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 696 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 744


>gi|217979120|ref|YP_002363267.1| AAA ATPase central domain protein [Methylocella silvestris BL2]
 gi|217504496|gb|ACK51905.1| AAA ATPase central domain protein [Methylocella silvestris BL2]
          Length = 437

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 26/187 (13%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTR 108
            L     S     +I  GP G+GK+ +A + + ++        A       L  +  + R
Sbjct: 42  ALTRRIASGSLGSLIFWGPPGTGKTTVARLLAHETNFAFVQVSAIFSGVAELKKLFEEAR 101

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDL 158
               +    LL  ++    H  N           +  +  L+  T              L
Sbjct: 102 GRRAIGQGTLLFVDEI---HRFNRAQQDSFLPVMEDGAITLIGATTENPSFELNAA---L 155

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            SR   A+V+     D++ +EKV+ +      R + ++    A +++  +     A  L 
Sbjct: 156 LSR---ASVLTFRALDEEAIEKVLSRAETHEARPLPLEPAARAAMIRMADGDGRAALTLA 212

Query: 217 DKMDNLA 223
           +++   A
Sbjct: 213 EEVWRAA 219


>gi|159129680|gb|EDP54794.1| mitochondrial AAA ATPase, putative [Aspergillus fumigatus A1163]
          Length = 952

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 681 PGLLLYGPPGTGKTLLAKAVARESGATVLE 710


>gi|168050884|ref|XP_001777887.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670752|gb|EDQ57315.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 550

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P+R V+L GP G  K+ LA   +  S++T FS     L S+ +   + +L +
Sbjct: 311 PARGVLLHGPPGCSKTTLAKAAAHSSQATLFSLSGADLYSMYVGEGEALLRD 362


>gi|222480132|ref|YP_002566369.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453034|gb|ACM57299.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC
           49239]
          Length = 740

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 40/165 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + V+L GP G+GK+ +A   ++++ +   S                 I ++       
Sbjct: 495 PPKGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV 554

Query: 107 TRKPVLLEDIDLLD---FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
           +   +  +++D L      +           QL   ++ + +    +++ A   P     
Sbjct: 555 SPTIIFFDELDSLAPSRGQEMGNNVSERVVNQLLTELDGLEEMGDVMVIGATNRPDMIDP 614

Query: 154 CLPDLCS----RLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
            L  L S    RL     V I  PD +  E+++     D  +  D
Sbjct: 615 AL--LRSGRFDRL-----VMIGQPDQEGRERILEIHTQDTPLAPD 652



 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 63/165 (38%), Gaps = 37/165 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEE 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLM--TARTFPVSWG 152
           +   + ++++D +                 QL  +++ +      +++  T R   V   
Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLETRGQVVVIGATNRVDSVDPA 341

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           +  P    R      ++I +PD+   ++++      R + +   +
Sbjct: 342 LRRP---GRFD--REIEIGVPDEVGRKEILQ--IHTRGMPLSDDV 379


>gi|115762608|ref|XP_784872.2| PREDICTED: similar to GA19899-PA [Strongylocentrotus purpuratus]
 gi|115948961|ref|XP_001198560.1| PREDICTED: similar to GA19899-PA [Strongylocentrotus purpuratus]
          Length = 444

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 13/80 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GKS LA   S +  ST +   +  L S  +   + ++ E        
Sbjct: 233 PWKRILLYGPPGTGKSRLAQAVSKEINSTFYCVSSADLISSWVGESEKIIKE-------- 284

Query: 123 DTQLFHIINSIHQYDSSLLM 142
              LFH   +  Q   S++ 
Sbjct: 285 ---LFHH--ATQQEGRSVVF 299


>gi|47086209|ref|NP_998080.1| spastin [Danio rerio]
 gi|45709942|gb|AAH67715.1| Spastin [Danio rerio]
          Length = 570

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A +L S  +   + ++
Sbjct: 327 PARGLLLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLV 376


>gi|15899170|ref|NP_343775.1| AAA ATPase family protein [Sulfolobus solfataricus P2]
 gi|284173716|ref|ZP_06387685.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
 gi|13815723|gb|AAK42565.1| AAA family ATPase [Sulfolobus solfataricus P2]
 gi|261600918|gb|ACX90521.1| Microtubule-severing ATPase [Sulfolobus solfataricus 98/2]
          Length = 607

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 83/220 (37%), Gaps = 48/220 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR-- 108
           P + ++L GP G GK+ +    +++S+            S  +      L  +  + R  
Sbjct: 94  PPKGMLLFGPPGCGKTMMMRALANESKLNFLYVNISDIMSKWYGESEARLRELFNNARKN 153

Query: 109 KPVLL--EDIDLLDFNDTQ---------LFHI----INSIHQYDSSLLMTARTFPVSWGV 153
            P +L  ++ID +               L  +    I+ +H  D  +++ +   P     
Sbjct: 154 APCILFFDEIDTIGVKRESHTGDSVTPRLLSLMLSEIDGLHSEDGVIVVGSTNVPQMLDK 213

Query: 154 CLPDLCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMER-- 207
            L      L+A     ++ I  P+ +  ++++      R   + + +    + +  ER  
Sbjct: 214 AL------LRAGRFDKLIYIGPPNKEARKQILQIHC--RGKPLAEDVDFDKLAEITERYS 265

Query: 208 --SLVFA-EKLVDKMDNLALSRG--MGITRSLAAEVLKET 242
              L    ++   K+ + A+ +G    IT +   E++K+ 
Sbjct: 266 GADLANLCQEAARKVASEAIEKGADRKITMADFIELIKKY 305



 Score = 37.4 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 16/84 (19%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS--------DKSRSTR--------FSNI 96
            +L++     P R ++L GP G GK+ +A   +          S +           + I
Sbjct: 367 YKLLEQLRVPPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKGYEGAIAAI 426

Query: 97  AKSLDSILIDTRKPVLLEDIDLLD 120
            +  +    +    +LL+++D + 
Sbjct: 427 KEVFNRARENKPAIILLDELDAIA 450


>gi|77411974|ref|ZP_00788304.1| ATPase, AAA family [Streptococcus agalactiae CJB111]
 gi|77162000|gb|EAO72981.1| ATPase, AAA family [Streptococcus agalactiae CJB111]
          Length = 422

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +        +T      + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++K I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKKAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|66807887|ref|XP_637666.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|60466071|gb|EAL64138.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 574

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 35/150 (23%)

Query: 65  RVVILVGPSGSGKS-CLANIWSDKSRSTRFSNIAKSLDSILIDTR-------KPVLLEDI 116
           R  +L GP GSGK+  + ++  +  +S    N++K +    I +          ++LEDI
Sbjct: 283 RGYLLYGPPGSGKTSFILSMAGNFGKSISIMNMSKGIHDGNIHSIIQKCNKDTILVLEDI 342

Query: 117 DLL---------DFNDTQLFH-IIN----SIHQYDSSLLMTA----RTFPVSWGVCLPDL 158
           D +           ND   F  ++N            L+MT     R  P        DL
Sbjct: 343 DAVFVKRKNNSAAGNDVLTFSGLLNAIDGLASSDGRILMMTTNHLERLSPALIRPGRIDL 402

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
             +   A+  +I          ++ K F D
Sbjct: 403 KVKFDYASNHQIE---------LMFKRFFD 423


>gi|326513256|dbj|BAK06868.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 782

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 25/101 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P   ++L GP G GK+ LA+  ++++    +   A  + S +    +             
Sbjct: 234 PVAGILLHGPPGCGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRVLFKKAYRT 293

Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144
               V +++ID +           N   + +  +   LMT 
Sbjct: 294 APSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 328


>gi|322496701|emb|CBZ31770.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 4849

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 50   EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
              A  L++ + SW    R V+LVGP  +GK+ L   W+        S    S       +
Sbjct: 1616 AAADALLERFTSWMNVHRRVLLVGPPFAGKTRLWRTWAGSQSPLIVSLPLISAADFYGTS 1675

Query: 108  RKPVLL 113
             +P  L
Sbjct: 1676 TEPSFL 1681


>gi|321465281|gb|EFX76283.1| hypothetical protein DAPPUDRAFT_322486 [Daphnia pulex]
          Length = 843

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 18/73 (24%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------- 109
           R ++L GP GSGKS L +   +   +T F     SL                        
Sbjct: 560 RSILLAGPHGSGKSFLMHAICNHIGATLFDISNSSLMGRYPGKAGMTMLIHLITKVSRLL 619

Query: 110 ---PVLLEDIDLL 119
               +++ED+D L
Sbjct: 620 QPSVIVIEDVDRL 632


>gi|270003538|gb|EEZ99985.1| hypothetical protein TcasGA2_TC002784 [Tribolium castaneum]
          Length = 876

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 78/228 (34%), Gaps = 52/228 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P R  +L GP G GK+ LAN  + +         A  L + +    +             
Sbjct: 241 PPRGFLLHGPPGCGKTLLANAIAGEIGVPLLKVAAPELVAGVSGESEERIRELFERAIFS 300

Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQY---DSSLLMTARTFPVSW 151
               + +++ID +  N              QL   ++ + Q    D  L++ A   P + 
Sbjct: 301 TPCILFIDEIDAITPNRQNAQKEMERRIVAQLLSCLDDLSQNECGDRVLVIGATNRPDAI 360

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQR--- 204
               P L    +A      + + +PD     +++  + A   + + +     ++ +    
Sbjct: 361 D---PALR---RAGRFDREICLGIPDVQARVQILKVLTAK--LKLSEDFDYDFLAKHTPG 412

Query: 205 ------MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
                 M  +   A   V++M N    +        A + L+E Q+ +
Sbjct: 413 YVGADLMSLTREAAMAAVNRMLNKLKEQHKLAQIVAAEKALEEKQKQE 460



 Score = 37.4 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 628 VLLCGPPGCGKTLLAKAMANEAGINFISVKGPELLNMYVGESERAV 673


>gi|239825648|ref|YP_002948272.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70]
 gi|239805941|gb|ACS23006.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70]
          Length = 635

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFETAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++  +  +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNGNEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD    E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVKGREAVLRVHA--RNKPLDESVDLKAIAMRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGMG 229
           A  L + ++  AL     
Sbjct: 369 A-DLENLLNEAALVAARR 385


>gi|229015468|ref|ZP_04172468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1273]
 gi|229021677|ref|ZP_04178260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1272]
 gi|228739613|gb|EEL90026.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1272]
 gi|228745826|gb|EEL95828.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1273]
          Length = 584

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 147 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 206

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 207 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 266

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 267 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENVNLRAIATRTP-GFSG 317

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 318 A-DLENLLNEAALVAAR 333


>gi|213409103|ref|XP_002175322.1| mitochondrial outer membrane ATPase Msp1 [Schizosaccharomyces
           japonicus yFS275]
 gi|212003369|gb|EEB09029.1| mitochondrial outer membrane ATPase Msp1 [Schizosaccharomyces
           japonicus yFS275]
          Length = 350

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 49/142 (34%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPV-------------- 111
           ++L GP G GK+ LA   + +S +T  + N+    D    ++ K V              
Sbjct: 130 LLLYGPPGCGKTMLAKALAKQSGATFINVNVGLLTDKWFGESNKLVEALFRLAHKLEPTV 189

Query: 112 -LLEDID-----LLDFNDTQLFHI-----------------------INSIHQYDSSLLM 142
             +++ID         +   +  +                        N I   D ++L 
Sbjct: 190 IFIDEIDSFLRQRQSTDHEAMAQLKAEFMSLWDGLLTGQSRVVVLGATNRIQDIDEAIL- 248

Query: 143 TARTFPVSWGVCLPDLCSRLKA 164
             R  P ++ + LPD  SR +A
Sbjct: 249 --RRMPKTFHIKLPD--SRQRA 266


>gi|189425232|ref|YP_001952409.1| Holliday junction DNA helicase RuvB [Geobacter lovleyi SZ]
 gi|238692114|sp|B3E468|RUVB_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189421491|gb|ACD95889.1| Holliday junction DNA helicase RuvB [Geobacter lovleyi SZ]
          Length = 338

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 31/191 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +      S     ++           LE  D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEI-- 112

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF-----LEKV 181
            H ++ + +    +L      P      L  +  +  +A  +K+ LP            +
Sbjct: 113 -HRLSHVVEE---ILY-----PAMEDFQLDIIIGQGPSARSIKLDLPRFTLVGATTRAGL 163

Query: 182 IVKMFADRQIFID------KKLAAYIVQRMERSLVFAEKLVDKMDNLA---LSRGMGITR 232
           +     DR   I           A+IV R  R L  A      +D      L+R    T 
Sbjct: 164 LSSPLRDRFGVISRLEFYTHDELAFIVTRSARILGMA------IDREGALELARRSRGTP 217

Query: 233 SLAAEVLKETQ 243
            +A  +L+  +
Sbjct: 218 RIANRLLRRVR 228


>gi|163751870|ref|ZP_02159084.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
 gi|161328220|gb|EDP99384.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica
           KT99]
          Length = 425

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 22/111 (19%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVH-----SAIEQAV----------RLIDSWPSWPSRVVI 68
           K++Q     P  L    DD ++        +  AV             D      S ++ 
Sbjct: 59  KQDQDKLPTPHELRAHLDDYVIGQDKAKKVLSVAVYNHYKRLKNSNHKDGVELGKSNIL- 117

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           L+GP+GSGK+ LA  ++      RF ++  ++      T    + ED++ +
Sbjct: 118 LIGPTGSGKTLLAETFA------RFLDVPFTMADATTLTEAGYVGEDVENI 162


>gi|156084130|ref|XP_001609548.1| ATPase, AAA family [Babesia bovis]
 gi|154796800|gb|EDO05980.1| ATPase, AAA family [Babesia bovis]
          Length = 363

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + +  ++  +
Sbjct: 148 PWRGILLYGPPGTGKTYLAKACATELDASFIA 179


>gi|138893741|ref|YP_001124194.1| cell-division protein and general stress protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250783|ref|ZP_03149470.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16]
 gi|134265254|gb|ABO65449.1| Cell-division protein and general stress protein(class III
           heat-shock) [Geobacillus thermodenitrificans NG80-2]
 gi|196209733|gb|EDY04505.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16]
          Length = 631

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFETAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++  +  +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNGNEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD    E V+     ++ +     L   I  R       A
Sbjct: 318 ------LRPGRFDRQITVDRPDVKGREAVLRVHARNKPLDESVDLKT-IAMRTP-GFSGA 369

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 370 -DLENLLNEAALVAARR 385


>gi|119481445|ref|XP_001260751.1| mitochondrial AAA ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119408905|gb|EAW18854.1| mitochondrial AAA ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 956

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 685 PGLLLYGPPGTGKTLLAKAVARESGATVLE 714


>gi|94734052|emb|CAK10965.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
           rerio]
          Length = 269

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 136 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 187

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 188 ------MFNYARDHQ 196


>gi|57529874|ref|NP_001006494.1| 26S protease regulatory subunit S10B [Gallus gallus]
 gi|53130584|emb|CAG31621.1| hypothetical protein RCJMB04_8n6 [Gallus gallus]
          Length = 389

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|30583901|gb|AAP36199.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 6
           [synthetic construct]
 gi|60653563|gb|AAX29475.1| proteasome 26S subunit 6 [synthetic construct]
          Length = 390

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|25027785|ref|NP_737839.1| insertion element hypothetical protein [Corynebacterium efficiens
           YS-314]
 gi|23493068|dbj|BAC18039.1| insertion element conserved hypothetical protein [Corynebacterium
           efficiens YS-314]
          Length = 271

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 27/138 (19%)

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104
           W + P+ ++IL  P+GSGK+ L       +    +S     +D +               
Sbjct: 102 WGADPTNLLILS-PTGSGKTYLTCAVGISACHNGYSVAYWRMDDLARRLAVTRIDTLEHE 160

Query: 105 -----IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                +     ++L+D   +  ++     LF I+ +  +   + ++ +++ P  W   LP
Sbjct: 161 DMLAGLFGVDVLILDDFLTVGVDERTASDLFAIL-ANRENIHATIIGSQSTPGHWLDVLP 219

Query: 157 DLCSRLKAATVVKISLPD 174
           D  S     ++V+   PD
Sbjct: 220 DKNS---GDSIVRARPPD 234


>gi|87306778|ref|ZP_01088925.1| hypothetical protein DSM3645_10602 [Blastopirellula marina DSM
           3645]
 gi|87290957|gb|EAQ82844.1| hypothetical protein DSM3645_10602 [Blastopirellula marina DSM
           3645]
          Length = 255

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 38  ISRDDLLVHSAIEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96
           +S + LL  +   +A   +D  W S   R  +++GP+G GKS L + ++ +  +   S  
Sbjct: 11  LSDEQLLRSAPFAEAWARLDYVWQS-NRRCAVVIGPAGVGKSTLMSRYAAQLAAAHVSVA 69

Query: 97  AKSLDSILIDTRKPVLLE 114
             +   +       +L+E
Sbjct: 70  QIAATGLASYDMASLLVE 87


>gi|167037427|ref|YP_001665005.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040094|ref|YP_001663079.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X514]
 gi|256752589|ref|ZP_05493443.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914177|ref|ZP_07131493.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X561]
 gi|307724587|ref|YP_003904338.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X513]
 gi|320115840|ref|YP_004185999.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|238687547|sp|B0K0L8|RUVB_THEPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|238687653|sp|B0K956|RUVB_THEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|166854334|gb|ABY92743.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X514]
 gi|166856261|gb|ABY94669.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748527|gb|EEU61577.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889112|gb|EFK84258.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X561]
 gi|307581648|gb|ADN55047.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X513]
 gi|319928931|gb|ADV79616.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 338

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 43/201 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA + S++           +++           L++ D+L  +
Sbjct: 51  PLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFID 110

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPD 174
           +    H +N   +    +L      P      L       P   S RL       I    
Sbjct: 111 EI---HRLNRSVEE---ILY-----PAMEDFELDIVIGKGPSARSIRLSLPRFTLIGA-- 157

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDK--------MDNLA-- 223
                 ++     DR   I          R++  S+   ++++ +        +D  A  
Sbjct: 158 -TTRAALMTSPLRDRFGVI---------NRLDYYSVEELKEIIKRSANILNIGIDEKAAL 207

Query: 224 -LSRGMGITRSLAAEVLKETQ 243
            +++    T  +A  +LK  +
Sbjct: 208 EIAKRSRGTPRIANRLLKRVR 228


>gi|71756045|ref|XP_828937.1| ATPase [Trypanosoma brucei TREU927]
 gi|70834323|gb|EAN79825.1| ATPase, putative [Trypanosoma brucei]
          Length = 700

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 47  SAIEQAVRLIDS-WPSWPSRV----VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           SA E A  LI     +WP       ++L GPSG+GKS L    ++K R+  F 
Sbjct: 78  SAFEHARDLICGILANWPYPSQAVSLLLCGPSGNGKSYLVRAAAEKVRTQDFH 130



 Score = 36.3 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           PS  V+L GP G+GK+ LA   + +  ++  
Sbjct: 444 PSTGVLLYGPPGTGKTMLARAIATELNASFI 474


>gi|46190732|ref|ZP_00121187.2| COG1484: DNA replication protein [Bifidobacterium longum DJO10A]
          Length = 166

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           ++L GP G+GKS LA      +          +   +L                  I   
Sbjct: 22  LVLYGPVGTGKSHLAIAIGRLACERGVPVRFFTATGLLMRLRRAQQENRLDRELASIGKA 81

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + +++++   L  ++     LF II+  ++   S++ T       WG  L D
Sbjct: 82  RLLIIDEFGYLPIDEEGSRLLFQIISDSYET-RSIIYTTNIEFSGWGRVLGD 132


>gi|330998553|ref|ZP_08322373.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841]
 gi|329568151|gb|EGG49970.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841]
          Length = 423

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 29/195 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI------------LIDTRKPVL 112
            IL GP G GK+ LA I + K  +     S +   +  +                   + 
Sbjct: 42  FILWGPPGVGKTTLAQIIAHKLETPFYTLSAVTSGVKDVREVIEKARNNRFFTQASPILF 101

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +  +  L+ A T   S+ V  P L SR     +  + 
Sbjct: 102 IDEIHRFSKSQQDSLL----GAVEQGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 153

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAY-----IVQRMERSLVFAEKLVDKMDNLALSR 226
               D L +++ K   +R I +  K   +     +++           +++ +     + 
Sbjct: 154 SLTKDDLMELLHK-AVERDIILKTKHIEFRETDAMLRYSGGDARKLLNILELVVEADGTD 212

Query: 227 GMGITRSLAAEVLKE 241
            + IT ++ AE L++
Sbjct: 213 QVVITDAVVAERLQQ 227


>gi|326390113|ref|ZP_08211674.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993761|gb|EGD52192.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 338

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 43/201 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA + S++           +++           L++ D+L  +
Sbjct: 51  PLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIEKSRDLAAILTNLQENDILFID 110

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPD 174
           +    H +N   +    +L      P      L       P   S RL       I    
Sbjct: 111 EI---HRLNRSVEE---ILY-----PAMEDFELDIVIGKGPSARSIRLSLPRFTLIGA-- 157

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDK--------MDNLA-- 223
                 ++     DR   I          R++  S+   ++++ +        +D  A  
Sbjct: 158 -TTRAALMTSPLRDRFGVI---------NRLDYYSVEELKEIIKRSANILNIGIDEDAAL 207

Query: 224 -LSRGMGITRSLAAEVLKETQ 243
            +++    T  +A  +LK  +
Sbjct: 208 EIAKRSRGTPRIANRLLKRVR 228


>gi|321398960|emb|CAM65627.2| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 4849

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 50   EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
              A  L++ + SW    R V+LVGP  +GK+ L   W+        S    S       +
Sbjct: 1616 AAADALLERFTSWMNVHRRVLLVGPPFAGKTRLWRTWAGSQSPLIVSLPLISAADFYGTS 1675

Query: 108  RKPVLL 113
             +P  L
Sbjct: 1676 TEPSFL 1681


>gi|285808236|gb|ADC35770.1| Holliday junction DNA helicase B [uncultured bacterium 293]
          Length = 341

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ LA++ + +  +T  +     ++           LE  ++L  ++ 
Sbjct: 57  VLLFGPPGVGKTSLAHVIAAELGATIKATAGPIIERAGDLAALLTALEPREVLFVDEI 114


>gi|254885205|ref|ZP_05257915.1| IstB IS21 family transposase [Bacteroides sp. 4_3_47FAA]
 gi|254837998|gb|EET18307.1| IstB IS21 family transposase [Bacteroides sp. 4_3_47FAA]
          Length = 219

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 24/116 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------VLL 113
            R ++L G  G+GK+ +A     K+    F+ +  S+  +L   R+           +  
Sbjct: 101 GRNLVLYGNPGTGKTHIATALGIKACQQDFTVLFTSVPVLLTQIREAKSAKTLRTLQLRF 160

Query: 114 EDIDLLDFND-----------TQLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           E  DL+  ++             LF H+  S+     + ++T       W   + D
Sbjct: 161 EKYDLVICDEFGYVSCDKEGGELLFNHL--SLRAGKKATIITTNLAFNRWNEIIKD 214


>gi|226292848|gb|EEH48268.1| ABC transporter family protein [Paracoccidioides brasiliensis
          Pb18]
          Length = 570

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90
          P  +++L+GPSGSGK+ L N+ + +  +
Sbjct: 60 PGELMVLMGPSGSGKTTLLNVLAHRDSA 87


>gi|295661482|ref|XP_002791296.1| ATP-binding cassette sub-family G member 4 [Paracoccidioides
           brasiliensis Pb01]
 gi|226280858|gb|EEH36424.1| ATP-binding cassette sub-family G member 4 [Paracoccidioides
           brasiliensis Pb01]
          Length = 607

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P  +++L+GPSGSGK+ L N+ + +  +
Sbjct: 158 PGELMVLMGPSGSGKTTLLNVLAHRDSA 185


>gi|297192938|ref|ZP_06910336.1| cell division protein FtsH [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151567|gb|EDY66565.2| cell division protein FtsH [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 680

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 207 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 266

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 267 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 326

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P   D  L  V  +        +   L  
Sbjct: 327 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLGAVARRTPGFTGADLSNVLNE 386

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R ++ L+    L + +D 
Sbjct: 387 AALLTARSDKKLIDNHALDEAIDR 410


>gi|225680516|gb|EEH18800.1| ATP-binding cassette sub-family G member 5 [Paracoccidioides
          brasiliensis Pb03]
          Length = 670

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90
          P  +++L+GPSGSGK+ L N+ + +  +
Sbjct: 60 PGELMVLMGPSGSGKTTLLNVLAHRDSA 87


>gi|222099516|ref|YP_002534084.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermotoga
           neapolitana DSM 4359]
 gi|221571906|gb|ACM22718.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermotoga
           neapolitana DSM 4359]
          Length = 406

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124
           V+L+GP+G+GK+ LA I +         N+  ++      T    + ED++ +     + 
Sbjct: 106 VLLIGPTGTGKTYLARILAK------ILNVPFAIADATPLTEAGYVGEDVENVVLRLLEA 159

Query: 125 QLFHI 129
             F +
Sbjct: 160 ANFDL 164


>gi|167761716|ref|ZP_02433843.1| hypothetical protein BACSTE_00050 [Bacteroides stercoris ATCC
           43183]
 gi|167700442|gb|EDS17021.1| hypothetical protein BACSTE_00050 [Bacteroides stercoris ATCC
           43183]
          Length = 251

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 24/116 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------VLL 113
            R ++L G  G+GK+ +A     K+    F+ +  S+  +L   R+           +  
Sbjct: 101 GRNLVLYGNPGTGKTHIATALGIKACQQDFTVLFTSVPVLLTQIREAKSAKTLRTLQLRF 160

Query: 114 EDIDLLDFND-----------TQLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           E  DL+  ++             LF H+  S+     + ++T       W   + D
Sbjct: 161 EKYDLVICDEFGYVSCDKEGGELLFNHL--SLRAGKKATIITTNLAFNRWNEIIKD 214


>gi|170576829|ref|XP_001893780.1| 26S protease regulatory subunit 6A [Brugia malayi]
 gi|158600003|gb|EDP37378.1| 26S protease regulatory subunit 6A, putative [Brugia malayi]
          Length = 439

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ +A   + +++ST        L  + I     ++          
Sbjct: 219 PPKGVLLYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N        D   ++ A       
Sbjct: 279 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDIKVIAATNRVDVL 338

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     +++  P +D   +++      R++ + K +    + R      
Sbjct: 339 DPAL--LRSGRLD--RKIELPSPTEDARARIMQ--IHSRKMNVHKDVNFEELARCTDDFN 392

Query: 211 FAE 213
            A+
Sbjct: 393 GAQ 395


>gi|156058356|ref|XP_001595101.1| hypothetical protein SS1G_03189 [Sclerotinia sclerotiorum 1980]
 gi|154700977|gb|EDO00716.1| hypothetical protein SS1G_03189 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 823

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGVLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 372

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 373 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 412


>gi|150005702|ref|YP_001300446.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|218128931|ref|ZP_03457735.1| hypothetical protein BACEGG_00503 [Bacteroides eggerthii DSM 20697]
 gi|294778103|ref|ZP_06743535.1| IstB-like ATP-binding protein [Bacteroides vulgatus PC510]
 gi|301312155|ref|ZP_07218074.1| putative IstB IS21 family transposase protein [Bacteroides sp.
           20_3]
 gi|319641397|ref|ZP_07996089.1| transposase [Bacteroides sp. 3_1_40A]
 gi|149934126|gb|ABR40824.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|217988894|gb|EEC55211.1| hypothetical protein BACEGG_00503 [Bacteroides eggerthii DSM 20697]
 gi|294448046|gb|EFG16614.1| IstB-like ATP-binding protein [Bacteroides vulgatus PC510]
 gi|300829830|gb|EFK60481.1| putative IstB IS21 family transposase protein [Bacteroides sp.
           20_3]
 gi|317386916|gb|EFV67803.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 251

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 24/116 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------VLL 113
            R ++L G  G+GK+ +A     K+    F+ +  S+  +L   R+           +  
Sbjct: 101 GRNLVLYGNPGTGKTHIATALGIKACQQDFTVLFTSVPVLLTQIREAKSAKTLRTLQLRF 160

Query: 114 EDIDLLDFND-----------TQLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           E  DL+  ++             LF H+  S+     + ++T       W   + D
Sbjct: 161 EKYDLVICDEFGYVSCDKEGGELLFNHL--SLRAGKKATIITTNLAFNRWNEIIKD 214


>gi|146077443|ref|XP_001463271.1| hypothetical protein [Leishmania infantum JPCM5]
          Length = 4849

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 50   EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
              A  L++ + SW    R V+LVGP  +GK+ L   W+        S    S       +
Sbjct: 1616 AAADALLERFTSWMNVHRRVLLVGPPFAGKTRLWRTWAGSQSPLIVSLPLISAADFYGTS 1675

Query: 108  RKPVLL 113
             +P  L
Sbjct: 1676 TEPSFL 1681


>gi|18073225|emb|CAC80626.1| polyprotein [Sapovirus Hu/Bristol/1998/UK]
          Length = 2280

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
           +IL GP G GK+ LA   +     T  SN + +LD     T   V + D
Sbjct: 477 IILTGPPGIGKTHLAQHLAAGFGKT--SNFSVTLDHHDSYTGNDVAIWD 523


>gi|60683496|ref|YP_213640.1| IstB IS21 family transposase protein [Bacteroides fragilis NCTC
           9343]
 gi|60494930|emb|CAH09745.1| putative IstB IS21 family transposase protein [Bacteroides fragilis
           NCTC 9343]
 gi|301164989|emb|CBW24554.1| putative IstB IS21 family transposase protein [Bacteroides fragilis
           638R]
          Length = 251

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 24/116 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------VLL 113
            R ++L G  G+GK+ +A     K+    F+ +  S+  +L   R+           +  
Sbjct: 101 GRNLVLYGNPGTGKTHIATALGIKACQQDFTVLFTSVPVLLTQIREAKSAKTLRTLQLRF 160

Query: 114 EDIDLLDFND-----------TQLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           E  DL+  ++             LF H+  S+     + ++T       W   + D
Sbjct: 161 EKYDLVICDEFGYVSCDKEGGELLFNHL--SLRAGKKATIITTNLAFNRWNEIIKD 214


>gi|327349285|gb|EGE78142.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis ATCC 18188]
          Length = 840

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S
Sbjct: 584 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 623


>gi|302327390|gb|ADL26591.1| cell division protein FtsH [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 676

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 36/163 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 206 ALLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFETGKKNAPCI 265

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +L+ A   P      L
Sbjct: 266 LFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFTANEGVILIAATNRPDVLDKAL 325

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             L   R     VV +  PD    E+++      R++ +   +
Sbjct: 326 --LRPGRFDRQIVVGL--PDLKGREEILKVHLKKRKVPLGDDV 364


>gi|294816143|ref|ZP_06774786.1| Putative oxidoreductase [Streptomyces clavuligerus ATCC 27064]
 gi|326444476|ref|ZP_08219210.1| oxidoreductase [Streptomyces clavuligerus ATCC 27064]
 gi|294328742|gb|EFG10385.1| Putative oxidoreductase [Streptomyces clavuligerus ATCC 27064]
          Length = 712

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR---LK 163
              P++++  D      T L     +       +++          V L  L  R   L+
Sbjct: 226 GSTPLVVDATDSGPGLATAL-----ASAADGGRVVLLGSPRAERADVPLRHLHDRGLDLR 280

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDK 218
            A V  +S  D+D L  +   +   R+  +   LA Y   R     R L      V  
Sbjct: 281 GAHVSGLSEADEDRLGDLFFTLLEQRRFTVRDVLADYPAHRAPEVYRRLAEDRAFVSA 338


>gi|242240291|ref|YP_002988472.1| ATP-dependent protease ATP-binding subunit ClpX [Dickeya dadantii
           Ech703]
 gi|242132348|gb|ACS86650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya
           dadantii Ech703]
          Length = 424

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55
           ++++E+     P ++++  P           P  +    DD ++    A   +  AV   
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEPAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSR--------VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGEANGGVELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|194884696|ref|XP_001976314.1| GG20087 [Drosophila erecta]
 gi|190659501|gb|EDV56714.1| GG20087 [Drosophila erecta]
          Length = 737

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D +L+    
Sbjct: 337 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 379


>gi|156373877|ref|XP_001629536.1| predicted protein [Nematostella vectensis]
 gi|156216539|gb|EDO37473.1| predicted protein [Nematostella vectensis]
          Length = 434

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 268

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACIVFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R   A + KI                  R + +++ +
Sbjct: 329 DPALMRPGRLDRKVEFGLPDLEGR---AHIFKIHA----------------RSMSVERDI 369

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     +
Sbjct: 370 RYELLARLCPNSTGAEIRSVCTEAGMFAIRARRKV 404


>gi|149370912|ref|ZP_01890507.1| NadR-like protein [unidentified eubacterium SCB49]
 gi|149355698|gb|EDM44256.1| NadR-like protein [unidentified eubacterium SCB49]
          Length = 186

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFNDT 124
            V+L GP  SGK+ LA   +    +   S   ++      DT+K V   ED+  +     
Sbjct: 14  RVVLFGPESSGKTTLAKALASHYNTEWVSEYMRTYLQDKWDTKKEVCTREDLMPIAKGQI 73

Query: 125 QL 126
           QL
Sbjct: 74  QL 75


>gi|145602125|ref|XP_001403458.1| proteasome regulatory particle subunit Rpt5 [Magnaporthe oryzae
           70-15]
 gi|145010562|gb|EDJ95218.1| proteasome regulatory particle subunit Rpt5 [Magnaporthe oryzae
           70-15]
          Length = 464

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112
            ++ GP G+GK+ LA   + ++ +T        L  + I     ++              
Sbjct: 248 ALMYGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSI 307

Query: 113 --LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCL 155
             ++++D +                  +  ++N        D   ++ A          L
Sbjct: 308 IFIDELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL 367

Query: 156 PDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             L S RL     ++  LP+++   +++      R++  D  +
Sbjct: 368 --LRSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMRFDPAV 404


>gi|16265863|gb|AAL16668.1|AF419850_1 suppressor of K+ transport growth defect-like protein [Musa
          acuminata AAA Group]
          Length = 292

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
          P R  +L GP G+GKS LA   + ++ ST FS
Sbjct: 21 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 52


>gi|28571847|ref|NP_732941.2| spastin, isoform A [Drosophila melanogaster]
 gi|28571849|ref|NP_651206.3| spastin, isoform B [Drosophila melanogaster]
 gi|229559935|sp|Q8I0P1|SPAST_DROME RecName: Full=Spastin; AltName: Full=D-Spastin; AltName:
           Full=Dm-Spastin; AltName: Full=Dspastin
 gi|28381443|gb|AAF56223.3| spastin, isoform A [Drosophila melanogaster]
 gi|28381444|gb|AAN13975.2| spastin, isoform B [Drosophila melanogaster]
 gi|201065827|gb|ACH92323.1| FI06043p [Drosophila melanogaster]
          Length = 758

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 34/186 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++          
Sbjct: 515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 574

Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAA 165
                 ++++D L    +   H   +  +  +  L+     P +     PD   R+   A
Sbjct: 575 QPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGN-----PD-GDRIVVLA 626

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              +    D+  L +   +++       D++    ++ R+       +K    +D  AL 
Sbjct: 627 ATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDTEALR 677

Query: 226 RGMGIT 231
           R   IT
Sbjct: 678 RLAKIT 683


>gi|134117824|ref|XP_772293.1| hypothetical protein CNBL1610 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254906|gb|EAL17646.1| hypothetical protein CNBL1610 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1159

 Score = 39.7 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            +L GP G+GK+ LA   + +S +   +     ++ + +   + ++
Sbjct: 747 ALLFGPPGTGKTLLARAVAAESGARMLAIQPSDVNDMYVGEGEKLV 792


>gi|323308336|gb|EGA61582.1| Rpt1p [Saccharomyces cerevisiae FostersO]
          Length = 383

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 158 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 209


>gi|323304204|gb|EGA57980.1| Rpt1p [Saccharomyces cerevisiae FostersB]
          Length = 467

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 293


>gi|320580457|gb|EFW94679.1| protease subunit component [Pichia angusta DL-1]
          Length = 442

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 217 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 268


>gi|300710324|ref|YP_003736138.1| hypothetical protein HacjB3_04775 [Halalkalicoccus jeotgali B3]
 gi|299124007|gb|ADJ14346.1| hypothetical protein HacjB3_04775 [Halalkalicoccus jeotgali B3]
          Length = 723

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GPSG+GK+ L    + ++     +  A  L +      +  L E  +    N
Sbjct: 221 PPRGVLLYGPSGTGKTLLGRAIAAETDGYVRTLSASELLASPAGETEDRLREVFEEAAEN 280

Query: 123 DTQL 126
              +
Sbjct: 281 APAI 284



 Score = 36.3 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 38/176 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------------------NIAK 98
           P+  V+L GP G+GK+ LA   ++++ S   S                            
Sbjct: 492 PATGVLLYGPPGTGKTLLAKAVANEADSNFISIKGPELLDKYVGESERGVREIFAKAREN 551

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +   +  D    +  E  D    +        QL   ++ + + +  +++     P    
Sbjct: 552 APTVVFFDELDALAAERGDGTGGSKAGERVVSQLLTELDGLEELEDVVVIATTNRPDLID 611

Query: 153 VCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME 206
             L  L S RL     V +  PD+    ++       R   + + +    +  R E
Sbjct: 612 DAL--LRSGRLD--RHVHVDAPDEPARREIFAVH--TRGKPLAEDVDLDELAARTE 661


>gi|291234599|ref|XP_002737235.1| PREDICTED: Tat-binding protein-1-like [Saccoglossus kowalevskii]
          Length = 429

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L G  G+GK+ +A   + +++ST        L  + I     ++          
Sbjct: 209 PPKGVLLYGAPGTGKTLMARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 268

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N +      +S  ++ A       
Sbjct: 269 LPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSNESIKVIAATNRVDIL 328

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     ++  +P+++   +++      R++ +   +    + R      
Sbjct: 329 DPAL--LRSGRLD--RKIEFPVPNEEARARIMQ--IHSRKMNVSADVNFEELARCTDDFN 382

Query: 211 FAE 213
            A 
Sbjct: 383 GAM 385


>gi|255730587|ref|XP_002550218.1| 26S protease regulatory subunit 7 [Candida tropicalis MYA-3404]
 gi|240132175|gb|EER31733.1| 26S protease regulatory subunit 7 [Candida tropicalis MYA-3404]
          Length = 444

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 219 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 270


>gi|254577681|ref|XP_002494827.1| ZYRO0A10560p [Zygosaccharomyces rouxii]
 gi|238937716|emb|CAR25894.1| ZYRO0A10560p [Zygosaccharomyces rouxii]
          Length = 468

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 243 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 294


>gi|254574136|ref|XP_002494177.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
 gi|238033976|emb|CAY71998.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
 gi|328354003|emb|CCA40400.1| 26S protease regulatory subunit 7 [Pichia pastoris CBS 7435]
          Length = 441

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 216 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 267


>gi|227113466|ref|ZP_03827122.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 424

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  S          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDSSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|294813244|ref|ZP_06771887.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC
           27064]
 gi|294325843|gb|EFG07486.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC
           27064]
          Length = 672

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 207 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 266

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 267 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 326

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P   D  L  V  +        +   L  
Sbjct: 327 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLGAVARRTPGFTGADLSNVLNE 386

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R ++ L+  + L + +D 
Sbjct: 387 AALLTARSDKKLIDNQALDEAIDR 410


>gi|270284161|ref|ZP_05965649.2| holliday junction DNA helicase RuvB [Bifidobacterium gallicum DSM
           20093]
 gi|270277218|gb|EFA23072.1| holliday junction DNA helicase RuvB [Bifidobacterium gallicum DSM
           20093]
          Length = 356

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 45/192 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P   ++L GP G GK+ LA I +++        S          +     +D  + + ++
Sbjct: 66  PPDHILLAGPPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFID 125

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD---------------- 157
           +I  L     +L +I     +     +M  +     S  + LP                 
Sbjct: 126 EIHRLPRAAEELLYI---AMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSP 182

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID--------------KKLAAYIVQ 203
           L +R      +     D+  L K+I +  A   + ++               ++A  +++
Sbjct: 183 LRARFGFTAHLDFYPADE--LRKLIERSAAVLGLELEQGASQQLSLRSRGTPRIANRLLR 240

Query: 204 RMERSLVFAEKL 215
           R+ R       L
Sbjct: 241 RV-RDWAIVHDL 251


>gi|241948885|ref|XP_002417165.1| 26S proteasome regulatory subunit 7, putative; CIM5 protein,
           putative; TAT-binding homolog 3, putative [Candida
           dubliniensis CD36]
 gi|223640503|emb|CAX44757.1| 26S proteasome regulatory subunit 7, putative [Candida dubliniensis
           CD36]
          Length = 444

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 219 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 270


>gi|156846924|ref|XP_001646348.1| hypothetical protein Kpol_1032p87 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117023|gb|EDO18490.1| hypothetical protein Kpol_1032p87 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 464

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 239 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 290


>gi|149244794|ref|XP_001526940.1| 26S protease regulatory subunit 7 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449334|gb|EDK43590.1| 26S protease regulatory subunit 7 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 431

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 222 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 273


>gi|126274173|ref|XP_001387450.1| protease subunit component [Scheffersomyces stipitis CBS 6054]
 gi|126213320|gb|EAZ63427.1| protease subunit component [Pichia stipitis CBS 6054]
          Length = 446

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 221 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 272


>gi|50422143|ref|XP_459634.1| DEHA2E07436p [Debaryomyces hansenii CBS767]
 gi|49655302|emb|CAG87864.1| DEHA2E07436p [Debaryomyces hansenii]
          Length = 446

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 221 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 272


>gi|50309131|ref|XP_454571.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643706|emb|CAG99658.1| KLLA0E13773p [Kluyveromyces lactis]
          Length = 475

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 250 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 301


>gi|84394695|gb|AAQ17057.2| polyprotein [Sapovirus Mc2]
          Length = 2280

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
           +IL GP G GK+ LA   +     T  SN + +LD     T   V + D
Sbjct: 477 IILTGPPGIGKTHLAQHLAAGFGKT--SNFSVTLDHHDSYTGNDVAIWD 523


>gi|58270374|ref|XP_572343.1| ATPase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57228601|gb|AAW45036.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 1159

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            +L GP G+GK+ LA   + +S +   +     ++ + +   + ++
Sbjct: 747 ALLFGPPGTGKTLLARAVAAESGARMLAIQPSDVNDMYVGEGEKLV 792


>gi|72163294|ref|YP_290951.1| Mername-AA223 peptidase [Thermobifida fusca YX]
 gi|71917026|gb|AAZ56928.1| Mername-AA223 peptidase. Metallo peptidase. MEROPS family M41
           [Thermobifida fusca YX]
          Length = 682

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 41/196 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 200 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 259

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 260 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDSRGGVILIAATNRPDILDPAL 319

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAE 213
             L   R     VV    PD +  + ++          +   +    I +R       A 
Sbjct: 320 --LRPGRFDRQIVV--DRPDLEGRKGILRVHAQ--GKPLGPDVDLDVIARRTP-GFTGA- 371

Query: 214 KLVDKMDNLALSRGMG 229
            L + ++  AL     
Sbjct: 372 DLANVINEGALLTARR 387


>gi|50550451|ref|XP_502698.1| YALI0D11418p [Yarrowia lipolytica]
 gi|49648566|emb|CAG80886.1| YALI0D11418p [Yarrowia lipolytica]
          Length = 436

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 211 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 262


>gi|50287085|ref|XP_445972.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525278|emb|CAG58891.1| unnamed protein product [Candida glabrata]
          Length = 472

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 247 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 298


>gi|6322704|ref|NP_012777.1| Rpt1p [Saccharomyces cerevisiae S288c]
 gi|464862|sp|P33299|PRS7_YEAST RecName: Full=26S protease regulatory subunit 7 homolog; AltName:
           Full=Protein CIM5; AltName: Full=Tat-binding homolog 3
 gi|313882|emb|CAA51973.1| YTA3 [Saccharomyces cerevisiae]
 gi|410510|emb|CAA80470.1| putative ATPase [Saccharomyces cerevisiae]
 gi|486249|emb|CAA81986.1| YTA3 [Saccharomyces cerevisiae]
 gi|151941662|gb|EDN60024.1| ATPase [Saccharomyces cerevisiae YJM789]
 gi|190409693|gb|EDV12958.1| 26S protease subunit component [Saccharomyces cerevisiae RM11-1a]
 gi|256271083|gb|EEU06182.1| Rpt1p [Saccharomyces cerevisiae JAY291]
 gi|285813120|tpg|DAA09017.1| TPA: Rpt1p [Saccharomyces cerevisiae S288c]
 gi|323332722|gb|EGA74127.1| Rpt1p [Saccharomyces cerevisiae AWRI796]
 gi|738777|prf||2001430A 26S protease
          Length = 467

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 293


>gi|68480234|ref|XP_715926.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida
           albicans SC5314]
 gi|68480347|ref|XP_715876.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida
           albicans SC5314]
 gi|46437519|gb|EAK96864.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida
           albicans SC5314]
 gi|46437571|gb|EAK96915.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida
           albicans SC5314]
 gi|238879018|gb|EEQ42656.1| 26S protease regulatory subunit 7 [Candida albicans WO-1]
          Length = 444

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 219 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 270


>gi|330965615|gb|EGH65875.1| recombination factor protein RarA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 440

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 22/150 (14%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +  S +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVI-VKMFADRQI 191
             A V  +   D+  L K++   +  DR +
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEDRGL 182


>gi|317147000|ref|XP_001821812.2| spastin [Aspergillus oryzae RIB40]
          Length = 958

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 687 PGLLLYGPPGTGKTLLAKAVARESGATVLE 716


>gi|294653351|gb|ADF28546.1| putative transposase [Paracoccus koreensis]
          Length = 242

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLA-NIWSD------KSRSTRFSNIAKSLDSILID---TRKPVLL 113
            R V+L+G +G+GKS LA +I         + R     ++   LD+        R   LL
Sbjct: 98  QRNVVLIGGTGTGKSHLAVSIARACIRRGKRGRFFNVVDLVNKLDAEARADRQGRTADLL 157

Query: 114 EDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
             +D L  ++             LFH+I+ +++  +S+++T       W 
Sbjct: 158 CRLDFLILDELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 206


>gi|291234534|ref|XP_002737206.1| PREDICTED: fidgetin-like protein 1-like [Saccoglossus kowalevskii]
          Length = 687

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 445 PPKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 484


>gi|269955154|ref|YP_003324943.1| ABC transporter-like protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303835|gb|ACZ29385.1| ABC transporter related protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 302

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 43/178 (24%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS--WPSRVVILV 70
           P + ++ QP    EQ     P     +RD +  + A E  VR +D         R+  ++
Sbjct: 3   PARGRHAQPDASSEQ-----PPAQASARDLVKTYGAGETEVRALDGVSVDFARGRLTAIM 57

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----- 125
           GPSGSGKS L +                 +  +   T   V+++D+++   +        
Sbjct: 58  GPSGSGKSTLMHC----------------MAGLDTPTSGTVVVDDVEISSMSQRALTRLR 101

Query: 126 ------LFHIINSI----HQYDSSL-LMTARTFP-VSWGVCLPD---LCSRLKAATVV 168
                 +F   N +     + + +L L  AR     +W   + D   L SRL+     
Sbjct: 102 RTRIGFVFQAYNLVPTLTAEENITLPLDIARAPVDPAWFDAVVDAVGLRSRLRHRPNA 159


>gi|227505941|ref|ZP_03935990.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940]
 gi|227197463|gb|EEI77511.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940]
          Length = 750

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 43/198 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    FS        + +                   
Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKQAKENSP 260

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     +  +L+ A   P     
Sbjct: 261 CIIFVDEIDAVGRQRGSGTGGGHDEREQTLNQLLVEMDGFGDREGVILIAATNRPDILDP 320

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       + ++ PD    E+++     D+ +  +  +A  + +R    + 
Sbjct: 321 AL------LRPGRFDRQIPVTNPDLAGREEILRVHAKDKPLAKEVDVAQ-LAKRTA-GMS 372

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  AL    
Sbjct: 373 GA-DLANVLNEAALLTAR 389


>gi|207343610|gb|EDZ71027.1| YKL145Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 271

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 46  PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 97


>gi|88602110|ref|YP_502288.1| AAA family ATPase, CDC48 subfamily protein [Methanospirillum
           hungatei JF-1]
 gi|88187572|gb|ABD40569.1| AAA family ATPase, CDC48 subfamily [Methanospirillum hungatei JF-1]
          Length = 801

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 49/227 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P + ++L GP G+GK+ LA   + KSR    S                 + ++       
Sbjct: 487 PPKGILLFGPPGTGKTLLAKAVAAKSRMNFISVKGPELLSKWVGESEKQVREAFRKARQS 546

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               +  ++ID L                  +Q+   ++ + +    ++M A   P    
Sbjct: 547 APSIIFFDEIDALVQQRGQQHTNSRVGESVLSQILTEMDGVEELSGVVIMAATNRPDLLD 606

Query: 153 VCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY-IVQRMERSL- 209
             L  L   RL+    + I  P+ +  + ++     D    +D+    Y  + R  R   
Sbjct: 607 PAL--LRPGRLE--KHIYIKPPNLNGRKAILKIYLRDLGTLLDEN-IDYDAIAREMRYFV 661

Query: 210 -VFAEKLV-----DKMDNLALSRGMG-----ITRSLAAEVLKETQQC 245
                  V     + +D++            IT     E+L   Q  
Sbjct: 662 GADIHAFVREVKMNLLDDVFTKTKRPEDVPRITTEYLKEILTHMQGT 708



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G+GK+ LA   + +  +    
Sbjct: 219 VLLYGPPGTGKTLLARAVASEVDAHFIP 246


>gi|328861741|gb|EGG10844.1| ATPase family protein [Melampsora larici-populina 98AG31]
          Length = 642

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P R ++L GP G+GK+ LA+I +  + 
Sbjct: 134 PPRGILLYGPPGTGKTLLASIVAKSTG 160


>gi|320103028|ref|YP_004178619.1| heme-binding protein [Isosphaera pallida ATCC 43644]
 gi|319750310|gb|ADV62070.1| heme-binding protein [Isosphaera pallida ATCC 43644]
          Length = 1081

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 132 SIHQYDSSLLMTARTFPVSWGV---CLPDL----CSRLKAATVVKISLPDDDFLEKV-IV 183
           +     + LL+ AR     W      LPDL     S+L A     +       L  +  +
Sbjct: 828 ATRSRAADLLVNARLTAAQWRELVERLPDLGPIEVSKLLALFETHLDET--AALRALEQI 885

Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
           +   DR     ++L     ++  R +    +L +++D    +R   I R LA 
Sbjct: 886 ETHRDRWRVRPEELRDRFAKQSPRVIAEVRRLAERLDAANAARVERINRLLAR 938


>gi|288958488|ref|YP_003448829.1| cell division protease [Azospirillum sp. B510]
 gi|288910796|dbj|BAI72285.1| cell division protease [Azospirillum sp. B510]
          Length = 593

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 62/194 (31%), Gaps = 41/194 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 190 LLLVGPPGTGKTMLAKAAAGEAGVPFFAASGSDFVEMFVGLGAARVRNLFKTARASAPCI 249

Query: 111 VLLEDIDLLDF----------NDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + +++ID L             +  L  +   ++ I +  + +++ A          +  
Sbjct: 250 LFIDEIDALAGKRGESTSHSEREQTLNQLLVEMDGIVEGGALVVIAATNRAEMLDAAV-- 307

Query: 158 LCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
               L+       + + LPD    E ++        + +   +    V R       A  
Sbjct: 308 ----LRPGRFDRHIHVGLPDLAGREAILAVHAGR--LTLAPDVCVRTVARGTPGFSGA-D 360

Query: 215 LVDKMDNLALSRGM 228
           L +  +  ALS   
Sbjct: 361 LANLTNEAALSAAR 374


>gi|207722958|ref|YP_002253387.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2]
 gi|206588146|emb|CAQ18721.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2]
          Length = 258

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 89  ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 143

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 144 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 201

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 202 FTQWATAFAD 211


>gi|156390974|ref|XP_001635544.1| predicted protein [Nematostella vectensis]
 gi|156222639|gb|EDO43481.1| predicted protein [Nematostella vectensis]
          Length = 417

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G GK+ LA   +  + +     +        +    P ++ D+  L 
Sbjct: 197 PPRGVLLYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL-GEGPRMVRDVFRLA 253


>gi|119494626|ref|ZP_01624747.1| recombination protein [Lyngbya sp. PCC 8106]
 gi|119452050|gb|EAW33267.1| recombination protein [Lyngbya sp. PCC 8106]
          Length = 331

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 64  SRVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
            RV+ + GP  SGK+ LA +  ++  R+   +      +  L  +   VL  DI+ L  +
Sbjct: 32  GRVIEIYGPESSGKTTLALHAIAEVQRAGGVAAF-VDAEHALDPSYASVLGVDIENLLVS 90

Query: 123 D 123
            
Sbjct: 91  Q 91


>gi|110741581|dbj|BAE98739.1| hypothetical protein [Arabidopsis thaliana]
          Length = 751

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 550 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 581


>gi|157864488|ref|XP_001680954.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68124247|emb|CAJ07009.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 4873

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 50   EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
              A  L++ + SW    R V+LVGP  +GK+ L   W+        S    S       +
Sbjct: 1640 AAADALLERFTSWMNVHRRVLLVGPPFAGKTRLWRTWAGSQSPLIVSLSLISAADFYGTS 1699

Query: 108  RKPVLL 113
             +P  L
Sbjct: 1700 TEPSFL 1705


>gi|56418597|ref|YP_145915.1| cell-division protein and general stress protein [Geobacillus
           kaustophilus HTA426]
 gi|56378439|dbj|BAD74347.1| cell-division protein and general stress protein (class III
           heat-shock) [Geobacillus kaustophilus HTA426]
          Length = 632

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFETAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++  +  +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNGNEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD    E V+     ++ +     L   I  R       A
Sbjct: 318 ------LRPGRFDRQITVDRPDVKGREAVLRVHARNKPLDESVDLKT-IAMRTP-GFSGA 369

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 370 -DLENLLNEAALVAARR 385


>gi|58271254|ref|XP_572783.1| ATPase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134114578|ref|XP_773997.1| hypothetical protein CNBH0440 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256627|gb|EAL19350.1| hypothetical protein CNBH0440 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229042|gb|AAW45476.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 439

 Score = 39.7 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R ++L GP G+GKS LA   + +++ST FS  +  L
Sbjct: 165 PWRGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDL 202


>gi|330990632|ref|ZP_08314589.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329762334|gb|EGG78821.1| Insertion sequence IS21 putative ATP-binding protein
           [Gluconacetobacter sp. SXCC-1]
          Length = 259

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWS--------DKSRSTRFSNIAKSLDSILIDTRKPVLLE---D 115
           V+L+G  G+GK+ LA   +         K+R     ++  +L+      R   + +    
Sbjct: 105 VVLIGGPGTGKTHLATALAIQAITHHRKKARFWSTVDLVNALEQEKTANRAGQIADRLLR 164

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +DL+  ++             LFH+++ +++  +S+++T       WG
Sbjct: 165 LDLVILDELGYLPFSASGGALLFHLLSRLYER-TSVIITTNLSFSEWG 211


>gi|328870868|gb|EGG19240.1| 26S proteasome ATPase 1 subunit [Dictyostelium fasciculatum]
          Length = 440

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|330805787|ref|XP_003290859.1| 26S proteasome ATPase 1 subunit [Dictyostelium purpureum]
 gi|325078984|gb|EGC32607.1| 26S proteasome ATPase 1 subunit [Dictyostelium purpureum]
          Length = 440

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 217 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268


>gi|323138890|ref|ZP_08073952.1| IstB domain protein ATP-binding protein [Methylocystis sp. ATCC
           49242]
 gi|322395834|gb|EFX98373.1| IstB domain protein ATP-binding protein [Methylocystis sp. ATCC
           49242]
          Length = 243

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
            R ++LVG +G+GK+ LA  I     R++       ++D +     +             
Sbjct: 99  QRNIVLVGGTGTGKTHLAIAIARSCIRASLRGRFFNTVDLVNRLEAETRAGRQGRIADYL 158

Query: 111 -----VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                V+L+++  L F       LFH+++ +++  +S+++T       W 
Sbjct: 159 TRMDFVILDELGYLPFAQAGGQLLFHLVSRLYER-TSVIVTTNLAFGEWP 207


>gi|313902545|ref|ZP_07835946.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467231|gb|EFR62744.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           subterraneus DSM 13965]
          Length = 614

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ +A   + ++                     S +    +    +    
Sbjct: 195 VLLYGPPGTGKTHMARAVAGEAGVPFYYISGSDFVEMFVGVGASRVRDLFEQAKRNAPAI 254

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +               +  L  +   ++     +  ++M A   P      L
Sbjct: 255 VFIDEIDAVGRQRGAGYGGGHDEREQTLNQLLVEMDGFGTNEGIIVMAATNRPDVLDPAL 314

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + I  PD    E ++      + +  D  LA  ++ R       A
Sbjct: 315 ------LRPGRFDRQIVIDRPDLVAREAILKVHTRSKPLAPDVDLA--LLARRTPGFTGA 366

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 367 -DLENLVNEAALLAARR 382


>gi|301777672|ref|XP_002924254.1| PREDICTED: fidgetin-like [Ailuropoda melanoleuca]
          Length = 748

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 39/187 (20%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 498 SDAFSGLTASP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 553

Query: 110 PVL----------------LEDIDLLDFNDTQLFH-IINSIH-------------QYDSS 139
            ++                + DID+L  +     H  +N +                D  
Sbjct: 554 KIIHASFLVARCRQPSVIFVSDIDMLLSSQVSEEHSPVNRMRTEFLMQLDTVLTSAEDQI 613

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           +++ A + P      L     R      + I LPD     ++IV++ +     ++ K  A
Sbjct: 614 VVICATSKPEEIDESL-----RRYFMKRLLIPLPDSTARHQIIVQLLSQHNYCLNDKEFA 668

Query: 200 YIVQRME 206
            +VQR E
Sbjct: 669 LLVQRTE 675


>gi|281208335|gb|EFA82511.1| 26S proteasome ATPase 1 subunit [Polysphondylium pallidum PN500]
          Length = 442

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 220 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 271


>gi|225684695|gb|EEH22979.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 994

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 321 KVLVLTGPPGLGKTTLAHVCARQAG 345


>gi|221127943|ref|XP_002165829.1| PREDICTED: similar to 26S protease regulatory subunit [Hydra
           magnipapillata]
          Length = 441

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 219 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 270


>gi|182417016|ref|ZP_02948395.1| DNA replication protein DnaC [Clostridium butyricum 5521]
 gi|237669638|ref|ZP_04529616.1| DNA replication protein DnaC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379113|gb|EDT76616.1| DNA replication protein DnaC [Clostridium butyricum 5521]
 gi|237654872|gb|EEP52434.1| dnaC family protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 326

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 27/115 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR-----------------K 109
           ++  G  GSGK+ L+   S       +  + K+ D ++ + R                  
Sbjct: 186 LLFYGNPGSGKTYLSYCISKNILDDGYLVVYKTSDELIQNLRDIRFNNNTNLESLLFDCD 245

Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            ++++D+     N+    +LF+I+N        ++++         + LPD+  R
Sbjct: 246 LLIIDDLGAEHLNEFSIAELFNILNRKILNKKKMIIST-------NLTLPDIVKR 293


>gi|167629899|ref|YP_001680398.1| holliday junction DNA helicase ruvb [Heliobacterium modesticaldum
           Ice1]
 gi|238687888|sp|B0TF70|RUVB_HELMI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|167592639|gb|ABZ84387.1| holliday junction DNA helicase ruvb [Heliobacterium modesticaldum
           Ice1]
          Length = 370

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 31/207 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA I + +           +++           L+ +D+L  +
Sbjct: 52  PLDHVLLYGPPGLGKTTLAQIIAQELGVQLRVTSGPAIERPGDLAAILTNLQPMDVLFID 111

Query: 123 DTQLFHIINSIHQYDSS---------LLMTARTFPVSWGVCLPD---------------- 157
           +    H +N   +             +++       S  + LP                 
Sbjct: 112 EI---HRLNRAVEEVLYPAMEDFCLDIVIGKGPAARSIRIDLPRFTLVGATTRAGMLTSP 168

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L  R      ++   PD+  LE +I++      +  + + A  I  R   +   A +L+ 
Sbjct: 169 LRDRFGVIHRLEYYRPDE--LEFIILRAATILGVTAEPEGAREIALRSRGTPRIANRLLK 226

Query: 218 KM-DNLALSRGMGITRSLAAEVLKETQ 243
           ++ D   +     +T  +A E L+  +
Sbjct: 227 RVRDYAQVLSDGVVTGEVAREALRRLE 253


>gi|126728035|ref|ZP_01743851.1| IstB-like ATP-binding protein [Sagittula stellata E-37]
 gi|126711000|gb|EBA10050.1| IstB-like ATP-binding protein [Sagittula stellata E-37]
          Length = 233

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 22/110 (20%)

Query: 64  SRVVILVGPSGSGKSCLA-NIWSD------KSRSTRFSNIAKSLDSILID---TRKPVLL 113
            R V+L G +G+GKS LA +I         + R     ++   LD+        R   LL
Sbjct: 89  QRNVVLFGGTGTGKSHLAVSIARACIRRGKRGRFFNVVDLVNKLDAEARADRQGRTADLL 148

Query: 114 EDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
             +D L  ++             LFH+I+ +++  +S+++T       W 
Sbjct: 149 CRLDFLILDELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 197


>gi|110804893|ref|YP_688413.1| recombination factor protein RarA [Shigella flexneri 5 str. 8401]
 gi|110614441|gb|ABF03108.1| putative polynucleotide enzyme [Shigella flexneri 5 str. 8401]
          Length = 447

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 SLFVDEVHRFNKSQQD 124


>gi|147920445|ref|YP_685764.1| cell division cycle protein 48 [uncultured methanogenic archaeon
           RC-I]
 gi|110621160|emb|CAJ36438.1| cell division cycle protein 48 [uncultured methanogenic archaeon
           RC-I]
          Length = 758

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           V+L GP G+GK+ LA   +++S++   +     L
Sbjct: 520 VLLYGPPGTGKTLLAKAIANESQANFITAKGSDL 553


>gi|9651743|gb|AAF91248.1|AF227504_1 proteasome regulatory ATPase subunit 6 [Trypanosoma brucei]
          Length = 408

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 187 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARLVRE 234


>gi|66826743|ref|XP_646726.1| 26S proteasome ATPase 1 subunit [Dictyostelium discoideum AX4]
 gi|74997381|sp|Q55BV5|PRS4_DICDI RecName: Full=26S protease regulatory subunit 4 homolog; AltName:
           Full=Tat-binding protein alpha; Short=DdTBPalpha
 gi|60474805|gb|EAL72742.1| 26S proteasome ATPase 1 subunit [Dictyostelium discoideum AX4]
          Length = 439

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 217 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268


>gi|313667022|gb|ADR72961.1| putative regulatory protein [Streptomyces sp. OH-4156]
          Length = 1083

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 25/131 (19%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND-- 123
           VV+L G  GSG++                 +A      L D  +   + D+     ++  
Sbjct: 261 VVLLHGEPGSGRT----------------ALAVRAAHALRDQFRGACVVDLRGGARDERP 304

Query: 124 ----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR-LKAATVVKISLPDDDFL 178
                 L H++N +      LL             L +L  R L    V  I   DD   
Sbjct: 305 LATREALLHLLNRLGAPRERLLFREGATADQQVARLTELYQRQLTGVPVTVI--LDDAVD 362

Query: 179 EKVIVKMFADR 189
              +  +  +R
Sbjct: 363 AAQVRALLPER 373


>gi|312084249|ref|XP_003144198.1| hypothetical protein LOAG_08620 [Loa loa]
 gi|307760641|gb|EFO19875.1| hypothetical protein LOAG_08620 [Loa loa]
          Length = 324

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D + +    
Sbjct: 266 VLLVGPPGTGKTLLAKAIAGEAQVPFFQASGSEFDELFVGQGA 308


>gi|304311214|ref|YP_003810812.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [gamma proteobacterium HdN1]
 gi|301796947|emb|CBL45160.1| Uncharacterized ATPase related to the helicase subunit of the
           Holliday junction resolvase [gamma proteobacterium HdN1]
          Length = 467

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 34/174 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-VLLEDID--LLDFND 123
           +IL GP G GK+ LA        +        +L ++L   ++    +++          
Sbjct: 52  MILWGPPGVGKTTLA-----MLMANYIEAQFITLSAVLSGVKEIRAAIDEARHYRQQGRQ 106

Query: 124 TQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVK 169
             LF    H  N   Q        D +++    T              L SR   A V  
Sbjct: 107 CLLFVDEVHRFNKSQQDAFLPHIEDGTVIFVGATTENPSFELNGA---LLSR---ARVYV 160

Query: 170 ISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +   D   +   +     D        I  +  +   I +  +  +  A  L++
Sbjct: 161 LKPLDASAITARLRSAMQDARGLAGAGIRAEDAILETIARAADGDMRRAYNLLE 214


>gi|297796103|ref|XP_002865936.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297311771|gb|EFH42195.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 830

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 550 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 581


>gi|294852541|ref|ZP_06793214.1| ATPase [Brucella sp. NVSL 07-0026]
 gi|294821130|gb|EFG38129.1| ATPase [Brucella sp. NVSL 07-0026]
          Length = 437

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 49  ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +        + +D +  A +++  +     A  L +++  
Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218

Query: 222 L 222
            
Sbjct: 219 A 219


>gi|257440691|ref|ZP_05616446.1| replicative DNA helicase [Faecalibacterium prausnitzii A2-165]
 gi|257196864|gb|EEU95148.1| replicative DNA helicase [Faecalibacterium prausnitzii A2-165]
          Length = 170

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 32/149 (21%)

Query: 52  AVRLIDSWPS--WPSRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILI 105
           A R ++ W +    +  + L G  G+GKS LA   +    ++      +N A+ L+ +  
Sbjct: 4   AHRYVEQWQTMRAENLGLFLWGGVGTGKSFLAGCIANALIEQEVPVHMTNFARILNELNS 63

Query: 106 DTRK------------PVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFPVS 150
                            ++++D  +    +  L  + N     ++    L++T       
Sbjct: 64  SFSGRNEVVDKLCCYPLLVIDDFGMERGTEYALEQVYNIADSRYRSRKPLIVTT------ 117

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLE 179
             + L ++  R +     +I    D  LE
Sbjct: 118 -NLTLDEMR-RPQDTPHARIY---DRLLE 141


>gi|294884174|ref|XP_002771115.1| 26S protease regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239874368|gb|EER02931.1| 26S protease regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 253

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 13/80 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GP G+GKS LA+  +++  +   +   +             L++  +L    
Sbjct: 144 PPRGVLLYGPPGTGKSLLASAVAEELEAAGTAIHVE-------------LVKSTELTTKG 190

Query: 123 DTQLFHIINSIHQYDSSLLM 142
           +  +  +         + L+
Sbjct: 191 EAAVHSLFARCRDSGLASLI 210


>gi|197294568|ref|YP_001799109.1| Putative peptidase M41 cell division protein, fragment [Candidatus
            Phytoplasma australiense]
 gi|171853895|emb|CAM11857.1| Putative peptidase M41 cell division protein, fragment [Candidatus
            Phytoplasma australiense]
          Length = 2026

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            P + V+L GP G+GK+ LA   + ++    F  +  S  S       P L+ D+
Sbjct: 1310 PPKGVLLYGPPGTGKTFLAKAIAKEAN-LPFFALNSSDFSKSYLGEGPKLINDV 1362


>gi|158422152|ref|YP_001523444.1| FtsH peptidase [Azorhizobium caulinodans ORS 571]
 gi|158329041|dbj|BAF86526.1| FtsH peptidase [Azorhizobium caulinodans ORS 571]
          Length = 640

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 65/199 (32%), Gaps = 43/199 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    F+        + +                   
Sbjct: 190 RGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 249

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +            D  +  L  +   ++     +  +L+ A   P     
Sbjct: 250 CIIFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 309

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    E+++      R+I I   +   ++ R      
Sbjct: 310 AL------LRPGRFDRQVVVPNPDVVGREQILKVHA--RKIPIAPDVNLKVIARGTPGFS 361

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L +  +  AL     
Sbjct: 362 GA-DLANLCNEAALMAARR 379


>gi|167034603|ref|YP_001669834.1| recombination factor protein RarA [Pseudomonas putida GB-1]
 gi|166861091|gb|ABY99498.1| AAA ATPase central domain protein [Pseudomonas putida GB-1]
          Length = 441

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +    +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +LL    T              L SR 
Sbjct: 99  AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R + +  +    ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRNLRVGDEAFKMLMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   +   +L ++++
Sbjct: 210 NFLENASDLAEDGSEIDVEMLQSLLGDSRR 239


>gi|49258183|gb|AAH73644.1| Psmc6 protein [Xenopus laevis]
          Length = 392

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 220

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 221 ------MFNYARDHQ 229


>gi|195539395|ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens]
 gi|73963837|ref|XP_535701.2| PREDICTED: similar to proteasome 26S ATPase subunit 6 [Canis
           familiaris]
 gi|114653051|ref|XP_001159476.1| PREDICTED: 26S protease regulatory subunit 10B isoform 2 [Pan
           troglodytes]
 gi|291403875|ref|XP_002718294.1| PREDICTED: proteasome 26S ATPase subunit 6 [Oryctolagus cuniculus]
 gi|296215034|ref|XP_002753956.1| PREDICTED: 26S protease regulatory subunit S10B [Callithrix
           jacchus]
 gi|297695107|ref|XP_002824794.1| PREDICTED: 26S protease regulatory subunit S10B-like [Pongo abelii]
 gi|332237110|ref|XP_003267746.1| PREDICTED: 26S protease regulatory subunit 10B [Nomascus
           leucogenys]
          Length = 403

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 232 ------MFNYARDHQ 240


>gi|51891264|ref|YP_073955.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
 gi|81389821|sp|Q67T82|FTSH2_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|51854953|dbj|BAD39111.1| cell division protein [Symbiobacterium thermophilum IAM 14863]
          Length = 587

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 48/215 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GP G+GK+ LA   + ++    F+    S   + +                     
Sbjct: 188 VLLYGPPGTGKTLLARAVAGEAGVPFFALSGSSFVELFVGMGASRVRELFAQARKNAPCI 247

Query: 111 VLLEDIDLLDFN-------------DTQLFHIINSIHQYDSS---LLMTARTFPVSWGVC 154
           V +++ID +                +  L  ++  +  + +    ++M A   P      
Sbjct: 248 VFIDEIDAVGRQRGSAAVVGGHDEREQTLNQLLTEMDGFGAYEGVIVMAATNRPDVLDKA 307

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
           L      L+       + +  PD    E+++      +Q+     LAA + +R       
Sbjct: 308 L------LRPGRFDRQIPVGPPDAAGREEILRVHAKGKQLDPSLDLAA-VARRTP-GFTG 359

Query: 212 AEKLVDKMDNLALSRGMG----ITRSLAAEVLKET 242
           A  L + ++  A+         IT S   E +   
Sbjct: 360 A-DLANLLNEAAILAVRRGRSHITMSEIDEAIDRV 393


>gi|71747532|ref|XP_822821.1| valosin-containing protein homolog [Trypanosoma brucei TREU927]
 gi|70832489|gb|EAN77993.1| valosin-containing protein homolog [Trypanosoma brucei]
          Length = 780

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 33/164 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP GSGK+ +A   ++++ +  F                 N+  +      +
Sbjct: 226 PPRGILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRNAFVESEKN 285

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P +    
Sbjct: 286 APAIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGLKGRSQVIVMAATNRPNAID-- 343

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +++     + ++  +  +
Sbjct: 344 -PALR-RFGRFDREIDIGVPDEIGRLEILRIHTKNMKLHPNVDV 385


>gi|325067914|ref|ZP_08126587.1| ATP-dependent metalloprotease FtsH [Actinomyces oris K20]
          Length = 358

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    FS  A     + +      + +  D    N   +
Sbjct: 241 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEMFVGVGASRVRDLFDQAKENAPAI 300


>gi|321264530|ref|XP_003196982.1| ATPase [Cryptococcus gattii WM276]
 gi|317463460|gb|ADV25195.1| ATPase, putative [Cryptococcus gattii WM276]
          Length = 1172

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            +L GP G+GK+ LA   + +S +   +     ++ + +   + ++
Sbjct: 748 ALLFGPPGTGKTLLARAVAAESGARMLAIQPSDVNDMYVGEGEKLV 793


>gi|281341969|gb|EFB17553.1| hypothetical protein PANDA_013561 [Ailuropoda melanoleuca]
          Length = 751

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 39/187 (20%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 501 SDAFSGLTASP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 556

Query: 110 PVL----------------LEDIDLLDFNDTQLFH-IINSIH-------------QYDSS 139
            ++                + DID+L  +     H  +N +                D  
Sbjct: 557 KIIHASFLVARCRQPSVIFVSDIDMLLSSQVSEEHSPVNRMRTEFLMQLDTVLTSAEDQI 616

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
           +++ A + P      L     R      + I LPD     ++IV++ +     ++ K  A
Sbjct: 617 VVICATSKPEEIDESL-----RRYFMKRLLIPLPDSTARHQIIVQLLSQHNYCLNDKEFA 671

Query: 200 YIVQRME 206
            +VQR E
Sbjct: 672 LLVQRTE 678


>gi|254584302|ref|XP_002497719.1| ZYRO0F11946p [Zygosaccharomyces rouxii]
 gi|238940612|emb|CAR28786.1| ZYRO0F11946p [Zygosaccharomyces rouxii]
          Length = 444

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +    +    + A  +    I     ++ E
Sbjct: 225 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 272


>gi|226509884|ref|NP_001150200.1| ATPase family AAA domain-containing protein 1 [Zea mays]
 gi|195637516|gb|ACG38226.1| ATPase family AAA domain-containing protein 1 [Zea mays]
          Length = 364

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 119 PQKGVLLYGPPGTGKTMLAKAIARESGAVFIN 150


>gi|194757108|ref|XP_001960807.1| GF11321 [Drosophila ananassae]
 gi|190622105|gb|EDV37629.1| GF11321 [Drosophila ananassae]
          Length = 740

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D +L+    
Sbjct: 340 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 382


>gi|167769902|ref|ZP_02441955.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM
           17241]
 gi|167667893|gb|EDS12023.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM
           17241]
          Length = 421

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 77/199 (38%), Gaps = 32/199 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112
             +I  GPSG GK+ +A+I + ++                  ++    ++I       + 
Sbjct: 40  PNLIFYGPSGVGKTTVASIIAKRAGKKLCKLNGTTASTSDIRDVVGETNTIDGIGGVILY 99

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           L++I  L+      L   I    +  S  L+ + T    + V    L SR   +TV +  
Sbjct: 100 LDEIQYLNKKQQQTLLEFI----ENGSITLIASTTENPYFYVYNAVL-SR---STVFEFK 151

Query: 172 LPDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
                 +++ + +        A R++ ++  +  YI       +  A   V+ +   AL+
Sbjct: 152 PVQPQAVQRAVQRAFEAAGEAAGRRLEVEDGVYEYIASACGGDVRKAVNAVELL---ALA 208

Query: 226 RGMGITRSL--AAEVLKET 242
            G   T +L  A +V +++
Sbjct: 209 AGANQTVTLEEARQVAQKS 227


>gi|270308855|ref|YP_003330913.1| recombination protein RecA [Dehalococcoides sp. VS]
 gi|270154747|gb|ACZ62585.1| recombination protein RecA [Dehalococcoides sp. VS]
          Length = 337

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 42  DLLVHSAIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           + +  S++   + L +   P    R+  + GP GSGK+ LA     +++          +
Sbjct: 38  EFIPTSSLALDIALGVGGIPR--GRIAEIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDV 95

Query: 101 DSILIDTRKPVLLEDIDLL-----DFNDTQL 126
           +  L          ++D L     D  +  L
Sbjct: 96  EHALDPKYASTCGVNLDELLISQPDTGEEAL 126


>gi|154422500|ref|XP_001584262.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121918508|gb|EAY23276.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 446

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F +I+ S
Sbjct: 175 PWRGILLYGPPGTGKSYLAKATASEANNSTFISISTS 211


>gi|104781339|ref|YP_607837.1| recombination factor protein RarA [Pseudomonas entomophila L48]
 gi|95110326|emb|CAK15033.1| DNA-dependant ATPase [Pseudomonas entomophila L48]
          Length = 441

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +    +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +  ++      R + +  +    ++   +       +++
Sbjct: 155 --ARVYVLKSLDEAALRKLVDRALSEERGLGKRNLRVGDEAFKMLMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NFLENASDLAEDGGEIGVELLQSLLGDSRR 239


>gi|94971585|ref|YP_593633.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Candidatus
           Koribacter versatilis Ellin345]
 gi|226704714|sp|Q1IHU1|MIAA_ACIBL RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|94553635|gb|ABF43559.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 307

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           + +L+GP+GSGK+ L+   +++      +  + ++   L         E+ + +      
Sbjct: 6   LFVLLGPTGSGKTSLSIALAERFGGEIVNCDSVAVYRELDIGTAKPTHEERESVPH---- 61

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185
             H+ + +   +    MTA  +       L D+ SR K   VV  +     +L  ++  +
Sbjct: 62  --HLFDVLPPTEP---MTAGEYARRAREVLKDIASRGKLPIVVGGTGL---YLRALLDGL 113

Query: 186 FADRQIFIDKKLAAYIVQRM-ERSLVFAEKLVDKMDNLALSR 226
           FA       ++L  ++ +R  ER   +  +++ +MD +A ++
Sbjct: 114 FA--GPERSEELREHLRRREQERGPTYLHRILSRMDRVAAAK 153


>gi|8439575|gb|AAF74998.1| cdc48-like protein [Entamoeba histolytica]
          Length = 772

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 40/190 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           PS+ V+  GP G GK+ LA   + + ++   S                N+    D     
Sbjct: 509 PSKGVLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQA 568

Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
               +  +++D +                    QL   ++ + +     ++ A   P   
Sbjct: 569 APCVLFFDELDSIGRARGGGAGDAGGSADRILNQLLTEMDGVGKKKQVFIIGATNRPDIL 628

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMER-S 208
              L  L   RL       I LPD      ++      R   +   +   +I +  E  S
Sbjct: 629 DPAL--LRPGRLDQLLF--IPLPDKASRISILQ--AKLRNSPVAPDVDLDWIAEHTENFS 682

Query: 209 LVFAEKLVDK 218
                ++V +
Sbjct: 683 GADLAEIVQR 692



 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G GK+ +A   ++++                      N+ ++      +
Sbjct: 236 PPKGVLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKN 295

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + ++M A   P +    
Sbjct: 296 APALIFIDEIDSIAPKRDKAQGEVERRVVAQLLTLMDGMKSRSNVIVMAATNRPNAIDSA 355

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+    +++      +++ I   +
Sbjct: 356 LR----RFGRFDREIDIGVPDETGRLEIL--NIHTKKMKIADDV 393


>gi|68470308|ref|XP_720658.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
 gi|68470569|ref|XP_720530.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
 gi|40362746|gb|AAR84642.1| AAA ATPase [Candida albicans]
 gi|46442402|gb|EAL01691.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
 gi|46442537|gb|EAL01825.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
          Length = 827

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+ V++  GP G GK+ LA   +++SR+   S
Sbjct: 556 PAGVLM-WGPPGCGKTLLAKAVANESRANFIS 586


>gi|328767174|gb|EGF77225.1| hypothetical protein BATDEDRAFT_37479 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 828

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 250 PPRGILMFGPPGTGKTLVARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 309

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 310 SPAIIFIDEIDAIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 369

Query: 155 L 155
           L
Sbjct: 370 L 370



 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 523 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 579


>gi|327438072|dbj|BAK14437.1| ATP-dependent Zn protease [Solibacillus silvestris StLB046]
          Length = 679

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 70/205 (34%), Gaps = 45/205 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 205 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 265 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDKAL 324

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD    E ++     ++ +     LAA + QR       A
Sbjct: 325 ------LRPGRFDRQITVGHPDVKGREAILKVHARNKPLSDTVDLAA-VAQRTP-GFSGA 376

Query: 213 EKLVDKMDNLAL--SRGMGITRSLA 235
             L + ++  AL  +R    + ++A
Sbjct: 377 -DLENLLNEAALVAARKNKKSINMA 400


>gi|297848504|ref|XP_002892133.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337975|gb|EFH68392.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1238

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 47/165 (28%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
            P++ ++L GP G+GK+ LA   + ++ +   +    S+ S                    
Sbjct: 970  PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 1029

Query: 107  TRKPVLLEDIDLL------DFNDTQL------FHIIN----SIHQYDSSLLMTA------ 144
                + ++++D +            +      F +IN         +  L++ A      
Sbjct: 1030 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF-MINWDGLRTKDKERVLVLAATNRPFD 1088

Query: 145  ------RTFPVSWGVCLPDL--CSRLKAATVVKISLPDDDFLEKV 181
                  R  P    V LPD    S++ +  + K  + +D  LE +
Sbjct: 1089 LDEAVIRRLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAI 1133


>gi|317131450|ref|YP_004090764.1| AAA ATPase central domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315469429|gb|ADU26033.1| AAA ATPase central domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 423

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 27/187 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112
             +I  GPSG GK+ +A+I + ++  T                I   LD+        + 
Sbjct: 39  PNLIFYGPSGVGKTTVASILAKQAGKTLHRLNGTNMSTADIKAIVGELDTFAGMGGVLLY 98

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAAT 166
           L++I  L+      L   I    +     L+ + T    + +    L SR      K+  
Sbjct: 99  LDEIQYLNKKQQQSLLEFI----EDGRITLIASTTENPYFYIYNAIL-SRCTVFEFKSVP 153

Query: 167 VVKISLPDDDFLEK-VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
             +I+           +++    R I +  ++ A I       +  A   V+ +   A  
Sbjct: 154 SAEIAK---AVRRAFAVMEQDKGRTIRVPDEVVAQISTGCGGDVRKAINAVELLALAARE 210

Query: 226 RGMGITR 232
               +T 
Sbjct: 211 ADGELTV 217


>gi|239608100|gb|EEQ85087.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis ER-3]
          Length = 831

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S ST FS  A SL S
Sbjct: 575 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 614


>gi|238882613|gb|EEQ46251.1| ribosome biogenesis ATPase RIX7 [Candida albicans WO-1]
          Length = 827

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+ V++  GP G GK+ LA   +++SR+   S
Sbjct: 556 PAGVLM-WGPPGCGKTLLAKAVANESRANFIS 586


>gi|260943676|ref|XP_002616136.1| hypothetical protein CLUG_03377 [Clavispora lusitaniae ATCC 42720]
 gi|238849785|gb|EEQ39249.1| hypothetical protein CLUG_03377 [Clavispora lusitaniae ATCC 42720]
          Length = 440

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 215 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 266


>gi|226330732|ref|ZP_03806250.1| hypothetical protein PROPEN_04652 [Proteus penneri ATCC 35198]
 gi|225201527|gb|EEG83881.1| hypothetical protein PROPEN_04652 [Proteus penneri ATCC 35198]
          Length = 354

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 36/198 (18%)

Query: 67  VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I     ++   R S +   +  I    R+ + +   +      T
Sbjct: 61  MILWGPPGTGKTTLAEIIGRYAQADIERLSAVTSGIKEI----RESIEIARQNRNAGRRT 116

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 117 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 170

Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKL---AAYIVQRMERSLVFAEKLVDKMD 220
               +  +E V+ +   D       R I +        A +V    R  +   +++  + 
Sbjct: 171 RSLTEADIELVLQQALDDTERGLGGRNIILPNDTRKMIAQLVNGDARRSLNLLEMMADIA 230

Query: 221 NLALSRGMGITRSLAAEV 238
            +       +T +L  E+
Sbjct: 231 EVDNQGKRVLTPALLTEI 248


>gi|224824471|ref|ZP_03697578.1| IstB domain protein ATP-binding protein [Lutiella nitroferrum 2002]
 gi|224602964|gb|EEG09140.1| IstB domain protein ATP-binding protein [Lutiella nitroferrum 2002]
          Length = 245

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 22/106 (20%)

Query: 67  VILVGPSGSGKSCLANIW--SDKSRSTRF----------------SNIAKSLDSILIDTR 108
           +ILVG +G+GK+ LA     +   R  R                       L +  +   
Sbjct: 101 LILVGGTGTGKTHLATALGVAAIHRGKRVRFYNAVDLVNLLEREKQQGKAGLLARQLVQM 160

Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
             V+L+++  L F +     LFH+I+ +++  +SL++T       W
Sbjct: 161 DAVILDELGYLPFPESGGALLFHLISQLYE-KTSLIITTNLSFGEW 205


>gi|196233359|ref|ZP_03132203.1| Holliday junction DNA helicase RuvB [Chthoniobacter flavus
           Ellin428]
 gi|196222499|gb|EDY17025.1| Holliday junction DNA helicase RuvB [Chthoniobacter flavus
           Ellin428]
          Length = 339

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 35/202 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +        +    +++           LE  D+L  ++   
Sbjct: 56  ILLSGPPGLGKTTLAYILAHAMGVNIKNTSGPTIEKAGDLAGLLTTLERGDVLFIDEI-- 113

Query: 127 FHIINSIHQ-------YDSSLLMTARTFP--VSWGVCLPD----------------LCSR 161
            H +    +        D  L +     P   S  + LP                 L +R
Sbjct: 114 -HRLQPAIEEYLYPAMEDYKLDIIIDQGPNARSIPLNLPRFTLIGATTRAGMLSAPLRTR 172

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDK 218
                  ++     + L+K++++      + ID   A  I  R     R      + V  
Sbjct: 173 F--GMTCRLDYYTAEELQKIVLRSAGLIGLDIDDPGALEIAARSRGTPRIANNLLRWVR- 229

Query: 219 MDNLALSRGMGITRSLAAEVLK 240
            D   +  G  +TR +A + L+
Sbjct: 230 -DFAQVRAGNRVTRDVADKALE 250


>gi|195504964|ref|XP_002099305.1| GE23439 [Drosophila yakuba]
 gi|229559933|sp|B4PL32|SPAST_DROYA RecName: Full=Spastin
 gi|194185406|gb|EDW99017.1| GE23439 [Drosophila yakuba]
          Length = 758

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 34/186 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++          
Sbjct: 515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 574

Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAA 165
                 ++++D L    +   H   +  +  +  L+     P +     PD   R+   A
Sbjct: 575 QPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGN-----PD-GDRIVVLA 626

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              +    D+  L +   +++       D++    ++ R+       +K    +D  AL 
Sbjct: 627 ATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDTEALR 677

Query: 226 RGMGIT 231
           R   IT
Sbjct: 678 RLAKIT 683


>gi|194910014|ref|XP_001982057.1| GG11247 [Drosophila erecta]
 gi|229559925|sp|B3P8A3|SPAST_DROER RecName: Full=Spastin
 gi|190656695|gb|EDV53927.1| GG11247 [Drosophila erecta]
          Length = 758

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 34/186 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++          
Sbjct: 515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 574

Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAA 165
                 ++++D L    +   H   +  +  +  L+     P +     PD   R+   A
Sbjct: 575 QPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGN-----PD-GDRIVVLA 626

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              +    D+  L +   +++       D++    ++ R+       +K    +D  AL 
Sbjct: 627 ATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDTEALR 677

Query: 226 RGMGIT 231
           R   IT
Sbjct: 678 RLAKIT 683


>gi|108801733|ref|YP_641930.1| Mername-AA223 peptidase [Mycobacterium sp. MCS]
 gi|119870884|ref|YP_940836.1| Mername-AA223 peptidase [Mycobacterium sp. KMS]
 gi|108772152|gb|ABG10874.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. MCS]
 gi|119696973|gb|ABL94046.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. KMS]
          Length = 783

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 65/206 (31%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K++ +QL    P+         D          D L + +  QA+           R V+
Sbjct: 147 KSRAKQLTKDMPKTTFADVAGADEAVEELYEIKDFLQNPSRYQALGAK------IPRGVL 200

Query: 69  LVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKPVL 112
           L GP G+GK+ LA   + ++                     S +    +    ++   + 
Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPSIIF 260

Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSW------ 151
           +++ID +               +  L  +   ++        +L+ A   P         
Sbjct: 261 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPALLR 320

Query: 152 --------GVCLPDLCSRLKAATVVK 169
                    V  PDL  R +A   V 
Sbjct: 321 PGRFDRQIPVTSPDLAGR-RAVLKVH 345


>gi|116629362|ref|YP_814534.1| ABC-type proline/glycine betaine transport system, ATPase component
           [Lactobacillus gasseri ATCC 33323]
 gi|311110983|ref|ZP_07712380.1| glycine betaine/carnitine/choline ABC transporter, ATP-binding
           protein [Lactobacillus gasseri MV-22]
 gi|116094944|gb|ABJ60096.1| ABC-type proline/glycine betaine transport system, ATPase component
           [Lactobacillus gasseri ATCC 33323]
 gi|311066137|gb|EFQ46477.1| glycine betaine/carnitine/choline ABC transporter, ATP-binding
           protein [Lactobacillus gasseri MV-22]
          Length = 320

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 23/84 (27%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           + +LVGPSGSGK+ L  ++                + ++  T+  +LL+D  + +++  +
Sbjct: 30  IFVLVGPSGSGKTTLLKMF----------------NRLIEPTKGEILLDDKSIKEYDLRK 73

Query: 126 LFHIINSIHQYDSSLLMTARTFPV 149
           L        +    +L TA  FP 
Sbjct: 74  L-------REKTGYVLQTASLFPN 90


>gi|324522117|gb|ADY47996.1| Transitional endoplasmic reticulum ATPase 1 [Ascaris suum]
          Length = 319

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P R ++L GP G+GK+ +A   ++++ +  F
Sbjct: 243 PPRGILLYGPPGTGKTLIARAVANETGAFFF 273


>gi|324501967|gb|ADY40871.1| ATP-dependent zinc metalloprotease YME1 [Ascaris suum]
          Length = 729

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D +L+    
Sbjct: 285 VLLVGPPGTGKTLLARAIAGEAQVPFFHTSGSEFDEVLVGQGA 327


>gi|262165385|ref|ZP_06033122.1| ATPase AAA family [Vibrio mimicus VM223]
 gi|262025101|gb|EEY43769.1| ATPase AAA family [Vibrio mimicus VM223]
          Length = 449

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQY 136
           F    H  N   Q 
Sbjct: 112 FVDEVHRFNKSQQD 125


>gi|227502057|ref|ZP_03932106.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725]
 gi|227077212|gb|EEI15175.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725]
          Length = 808

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 67/198 (33%), Gaps = 43/198 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKEHSP 260

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     +  +L+ A   P     
Sbjct: 261 CIIFVDEIDAVGRQRGSGTGGGHDEREQTLNQLLVEMDGFGDREGVILIAATNRPDILDP 320

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       + ++ PD    E+++     D+ +  +  +A  + +R    + 
Sbjct: 321 AL------LRPGRFDRQIPVTNPDLAGREQILRVHAKDKPLAEEVDVAQ-LAKRTA-GMS 372

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  AL    
Sbjct: 373 GA-DLANVLNEAALLTAR 389


>gi|225464692|ref|XP_002277515.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 835

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 555 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 586


>gi|254384448|ref|ZP_04999789.1| ATPase associated with various cellular activities [Streptomyces
           sp. Mg1]
 gi|194343334|gb|EDX24300.1| ATPase associated with various cellular activities [Streptomyces
           sp. Mg1]
          Length = 617

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 30  FSFPRCLGISRDDLLV--HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
              P        +LLV     + +   L+     W  R ++L GP G+GK+ LA
Sbjct: 318 LELPEPTDELAAELLVHKTDWLREVRDLL-----WDDRQLVLYGPPGTGKTYLA 366


>gi|209548968|ref|YP_002280885.1| recombination factor protein RarA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534724|gb|ACI54659.1| AAA ATPase central domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 438

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 29/157 (18%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111
           R+I+S        +I  GP G+GK+ +A + S ++     + S I   +  +        
Sbjct: 47  RMIESD---SLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKMFETA- 102

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
               +  +D   T LF    H  N           +  + +L+  T              
Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           L SR   A V+     D++ LE+++ +  A  Q  + 
Sbjct: 157 LLSR---ARVLTFKSHDEESLEELLKRAEAIEQKPLP 190


>gi|160331725|ref|XP_001712569.1| prsS8 [Hemiselmis andersenii]
 gi|159766018|gb|ABW98244.1| prsS8 [Hemiselmis andersenii]
          Length = 407

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  S  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHSGCTFIRMSGSELVQKYIGEGSRMVRE 232


>gi|156843387|ref|XP_001644761.1| hypothetical protein Kpol_1020p9 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115411|gb|EDO16903.1| hypothetical protein Kpol_1020p9 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 812

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 239 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 298

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 299 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 358

Query: 155 L 155
           L
Sbjct: 359 L 359



 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PS+ V+  GP G+GK+ LA   + +  +                   SNI    D     
Sbjct: 512 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 571

Query: 107 TRKPVLLEDIDLLD 120
               V L+++D + 
Sbjct: 572 APTVVFLDELDSIA 585


>gi|114653053|ref|XP_001159421.1| PREDICTED: similar to Psmc6 protein isoform 1 [Pan troglodytes]
          Length = 370

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 232 ------MFNYARDHQ 240


>gi|45185737|ref|NP_983453.1| ACR050Cp [Ashbya gossypii ATCC 10895]
 gi|44981492|gb|AAS51277.1| ACR050Cp [Ashbya gossypii ATCC 10895]
          Length = 475

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 250 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 301


>gi|85707807|ref|ZP_01038873.1| ATPase [Erythrobacter sp. NAP1]
 gi|85689341|gb|EAQ29344.1| ATPase [Erythrobacter sp. NAP1]
          Length = 439

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G+GK+ +A + +D       S  A    S + D +K     D        T L
Sbjct: 61  MVLWGPPGTGKTSIARLLADAVGMRFVSISAVF--SGVADLKKAFAEADKMADAGKTTLL 118

Query: 127 F----HIINSIHQYD 137
           F    H  N   Q  
Sbjct: 119 FVDEIHRFNRAQQDG 133


>gi|25012002|ref|NP_736397.1| recombination factor protein RarA [Streptococcus agalactiae NEM316]
 gi|77412913|ref|ZP_00789117.1| ATPase, AAA family [Streptococcus agalactiae 515]
 gi|24413545|emb|CAD47623.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77161053|gb|EAO72160.1| ATPase, AAA family [Streptococcus agalactiae 515]
          Length = 422

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +        +T      + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++K I    +D  R     + ID +   +IV      L  A   +D
Sbjct: 155 IKKAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200


>gi|329765429|ref|ZP_08257008.1| ATPase central domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329138070|gb|EGG42327.1| ATPase central domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 397

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
            WP   ++L GP G+GK+ LA   +++      +  A S+
Sbjct: 147 GWPKG-MLLYGPPGTGKTMLAAATANEMDGYFINVDASSM 185


>gi|322710616|gb|EFZ02190.1| intermembrane space AAA protease IAP-1 [Metarhizium anisopliae
           ARSEF 23]
          Length = 688

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 63/195 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+LVGP G+GK+ LA   + ++                       + +   +    +   
Sbjct: 241 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFAAAKAKSPAI 300

Query: 111 VLLEDIDLLDF-----NDT-------QLFHIINSIHQYDSSLLMTARTFPVSW------- 151
           + ++++D +       +         QL   ++   Q    ++M A   P          
Sbjct: 301 IFIDELDAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDTKIIIMGATNLPNLLDKALTRP 360

Query: 152 -------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQ 203
                   V LPD+  RL                   I+K  A + I     +    I  
Sbjct: 361 GRFDRHINVDLPDVRGRL------------------AILKHHAKK-IKAAPDVDLDAIAA 401

Query: 204 RME-RSLVFAEKLVD 217
           R   RS    E +++
Sbjct: 402 RSPGRSGAELENMLN 416


>gi|319944196|ref|ZP_08018472.1| cell division protein FtsH [Lautropia mirabilis ATCC 51599]
 gi|319742491|gb|EFV94902.1| cell division protein FtsH [Lautropia mirabilis ATCC 51599]
          Length = 641

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 39/197 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V++VGP G+GK+ LA   + +++   FS        + +                   
Sbjct: 197 RGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRDMFENAKKHAP 256

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++        +L+ A   P     
Sbjct: 257 CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFETGQGIILIAATNRPDVLDP 316

Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L  L   R     VV +  PD    E+++      R++ +   + A ++ R    +  A
Sbjct: 317 AL--LRPGRFDRQVVVSL--PDIRGREQILNVHM--RKVPVGPDVQADVLARGTPGMSGA 370

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 371 -DLANLVNEAALFAARR 386


>gi|296448894|ref|ZP_06890716.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
 gi|296253598|gb|EFH00803.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium
           OB3b]
          Length = 478

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 73/213 (34%), Gaps = 43/213 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    F+        + +                   
Sbjct: 27  RGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 86

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +            D  +  L  +   ++     +  +L+ A   P     
Sbjct: 87  CIIFVDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 146

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      ++       + +  PD    EK++      R++ +   +   +V R      
Sbjct: 147 AL------MRPGRFDRQINVPNPDFIGREKILKVHA--RKVPLAPDVDLKVVARGTPGFS 198

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243
            A  L++ ++  AL       R +  +  ++ +
Sbjct: 199 GA-DLMNLVNEAALLAARRSKRIVTRQEFEDAR 230


>gi|296422801|ref|XP_002840947.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637174|emb|CAZ85138.1| unnamed protein product [Tuber melanosporum]
          Length = 270

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 45  PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 96


>gi|312195527|ref|YP_004015588.1| AAA ATPase [Frankia sp. EuI1c]
 gi|311226863|gb|ADP79718.1| AAA ATPase central domain protein [Frankia sp. EuI1c]
          Length = 622

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 48/181 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPV---------- 111
           V+L GP G+GK+ LA+I S  +          +   K + +++ + R  +          
Sbjct: 97  VVLWGPPGTGKTTLAHIVSRATGRRFRELSAVTAGVKDVRAVIDEARDALSSSRSNQSRR 156

Query: 112 ------LLEDIDLLDFND------TQLF----HIINSIH--------QYDSSLLMTARTF 147
                 L  D       +      T LF    H              +     L+ A T 
Sbjct: 157 MVREPGLFSDAAQAPGGEVPVDLRTVLFIDEVHRFTRTQQDALLPAVERGWITLVAATTE 216

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIV 202
             S+ V  P L SR   + +  ++   DD +  ++ +   D R     + I      ++V
Sbjct: 217 NPSFSVVAP-LLSR---SLLFTLTPLTDDDIRALVRRALVDPRGYGGRVRIADDALEHLV 272

Query: 203 Q 203
           +
Sbjct: 273 R 273


>gi|227328850|ref|ZP_03832874.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 424

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  S          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDSSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|224093035|ref|XP_002188362.1| PREDICTED: putative 26S protease regulatory subunit 7 [Taeniopygia
           guttata]
          Length = 569

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 344 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 403

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 404 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 463

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 464 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 504

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 505 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 539


>gi|261417562|ref|YP_003251244.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61]
 gi|297528437|ref|YP_003669712.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3]
 gi|319765219|ref|YP_004130720.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52]
 gi|261374019|gb|ACX76762.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61]
 gi|297251689|gb|ADI25135.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3]
 gi|317110085|gb|ADU92577.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52]
          Length = 632

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFETAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++  +  +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNGNEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD    E V+     ++ +     L   I  R       A
Sbjct: 318 ------LRPGRFDRQITVDRPDVKGREAVLRVHARNKPLDESVDLKT-IAMRTP-GFSGA 369

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 370 -DLENLLNEAALVAARR 385


>gi|254388632|ref|ZP_05003865.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
 gi|326441646|ref|ZP_08216380.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
 gi|197702352|gb|EDY48164.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064]
          Length = 661

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 255

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 256 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 315

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P   D  L  V  +        +   L  
Sbjct: 316 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLGAVARRTPGFTGADLSNVLNE 375

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R ++ L+  + L + +D 
Sbjct: 376 AALLTARSDKKLIDNQALDEAIDR 399


>gi|315230714|ref|YP_004071150.1| proteasome-activating AAA-ATPase [Thermococcus barophilus MP]
 gi|315183742|gb|ADT83927.1| proteasome-activating AAA-ATPase [Thermococcus barophilus MP]
          Length = 398

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ +A   + +  +T    +   L    I     ++ E
Sbjct: 172 PPKGVLLYGPPGCGKTLMAKALAREVNATFIRVVGSELVRKYIGEGARLVHE 223


>gi|195331488|ref|XP_002032433.1| GM26551 [Drosophila sechellia]
 gi|229559929|sp|B4HGG6|SPAST_DROSE RecName: Full=Spastin
 gi|194121376|gb|EDW43419.1| GM26551 [Drosophila sechellia]
          Length = 758

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 34/186 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++          
Sbjct: 515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 574

Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAA 165
                 ++++D L    +   H   +  +  +  L+     P +     PD   R+   A
Sbjct: 575 QPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGN-----PD-GDRIVVLA 626

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              +    D+  L +   +++       D++    ++ R+       +K    +D  AL 
Sbjct: 627 ATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDTEALR 677

Query: 226 RGMGIT 231
           R   IT
Sbjct: 678 RLAKIT 683


>gi|190348879|gb|EDK41426.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 445

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 220 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 271


>gi|167524855|ref|XP_001746763.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775033|gb|EDQ88659.1| predicted protein [Monosiga brevicollis MX1]
          Length = 437

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + ++L GP G+GK+  A   ++++ +     I   L    +     ++ E  +L 
Sbjct: 212 PPKGILLYGPPGTGKTLCARAVANRTDAAFIRVIGSELVQKYVGEGARMVREIFELA 268


>gi|187922127|ref|YP_001893769.1| recombination factor protein RarA [Burkholderia phytofirmans PsJN]
 gi|187713321|gb|ACD14545.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN]
          Length = 439

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 18/177 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            IL GP G GK+ L  + +  + S   +  A       I         ++D    + T L
Sbjct: 52  FILWGPPGVGKTTLGRLAASATDSRFIAISAVLAGVKDIRQAIDEAQAELDNHGRS-TVL 110

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +     L+   T      V    L SR   A V  +    
Sbjct: 111 FVDEIHRFNKAQQDALLPHVESGLLTLVGGTTEHPGLAVNSA-LLSR---AQVYTLEPLS 166

Query: 175 DDFLEKVIVK-MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            D L+++  +     + + +D      +    +        L++++ N A   G  +
Sbjct: 167 GDELQQLYERARPHLQGVTLDADALDLLKGFADGDGRRFLNLLEQVTNAASGAGKAV 223


>gi|126437720|ref|YP_001073411.1| Mername-AA223 peptidase [Mycobacterium sp. JLS]
 gi|126237520|gb|ABO00921.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. JLS]
          Length = 784

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 65/206 (31%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K+K +QL    P+         D          D L + +  QA+         P  V+ 
Sbjct: 147 KSKAKQLSKDMPKTTFADVAGADEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 200

Query: 69  LVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKPVL 112
           L GP G+GK+ LA   + ++                     S +    +    ++   + 
Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKQNSPSIIF 260

Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSW------ 151
           +++ID +               +  L  +   ++        +L+ A   P         
Sbjct: 261 VDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPALLR 320

Query: 152 --------GVCLPDLCSRLKAATVVK 169
                    V  PDL  R +A   V 
Sbjct: 321 PGRFDRQIPVTSPDLAGR-RAVLKVH 345


>gi|213972598|ref|NP_001093979.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Rattus
           norvegicus]
 gi|293341981|ref|XP_002725096.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase,
           6-like [Rattus norvegicus]
 gi|149033503|gb|EDL88301.1| rCG61291 [Rattus norvegicus]
          Length = 403

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 232 ------MFNYARDHQ 240


>gi|83589925|ref|YP_429934.1| vesicle-fusing ATPase [Moorella thermoacetica ATCC 39073]
 gi|83572839|gb|ABC19391.1| Vesicle-fusing ATPase [Moorella thermoacetica ATCC 39073]
          Length = 494

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 14/77 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + ++L GP G+GK+ +A   +  + +   +        +        + E        
Sbjct: 97  PLKGILLSGPPGTGKTLMARAAATYTDAVFLAASGSEFIEMYAGVGAQRVRE-------- 148

Query: 123 DTQLFHIINSIHQYDSS 139
                 + N   +    
Sbjct: 149 ------LFNRARELARR 159


>gi|23502083|ref|NP_698210.1| recombination factor protein RarA [Brucella suis 1330]
 gi|161619161|ref|YP_001593048.1| recombination factor protein RarA [Brucella canis ATCC 23365]
 gi|254704491|ref|ZP_05166319.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686]
 gi|260566265|ref|ZP_05836735.1| ATPase [Brucella suis bv. 4 str. 40]
 gi|261755173|ref|ZP_05998882.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686]
 gi|23348042|gb|AAN30125.1| ATPase, AAA family [Brucella suis 1330]
 gi|161335972|gb|ABX62277.1| AAA ATPase central domain protein [Brucella canis ATCC 23365]
 gi|260155783|gb|EEW90863.1| ATPase [Brucella suis bv. 4 str. 40]
 gi|261744926|gb|EEY32852.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686]
          Length = 437

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 49  ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +        + +D +  A +++  +     A  L +++  
Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218

Query: 222 L 222
            
Sbjct: 219 A 219


>gi|238496723|ref|XP_002379597.1| mitochondrial AAA ATPase, putative [Aspergillus flavus NRRL3357]
 gi|83769675|dbj|BAE59810.1| unnamed protein product [Aspergillus oryzae]
 gi|220694477|gb|EED50821.1| mitochondrial AAA ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 954

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 683 PGLLLYGPPGTGKTLLAKAVARESGATVLE 712


>gi|66809637|ref|XP_638541.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4]
 gi|74996881|sp|Q54PJ1|PRS10_DICDI RecName: Full=26S protease regulatory subunit 10B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
           Full=Proteasome 26S subunit ATPase 6
 gi|60467149|gb|EAL65185.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4]
          Length = 393

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +    +     ++ ++    I     V+ E
Sbjct: 174 VLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIRE 221


>gi|319956008|ref|YP_004167271.1| holliday junction DNA helicase ruvb [Nitratifractor salsuginis DSM
           16511]
 gi|319418412|gb|ADV45522.1| Holliday junction DNA helicase RuvB [Nitratifractor salsuginis DSM
           16511]
          Length = 337

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 31/202 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G GK+ LANI + +  +   +  A  ++           +E+ D+L  ++   
Sbjct: 55  ILFFGPPGLGKTTLANIIASEMGANIKTTAAPMIEKSGDLAALLTNIEEGDILFIDEI-- 112

Query: 127 FH---------IINSIHQYDSSLLMTARTFPVSWGVCLPD----------------LCSR 161
            H         +  ++  Y   +++ +     +  + LP                 L  R
Sbjct: 113 -HRMSPAIEEILYPAMEDYRLDIIIGSGPAAQAVKIDLPRFTLVGATTRAGMLSNPLRER 171

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220
                  ++     + L K+I +      I IDK  A  I +R   +   A +L+ ++ D
Sbjct: 172 F--GMHFRMEFYTPEELAKIIEQAADKLGIGIDKDAALEIARRSRGTPRIALRLLRRVRD 229

Query: 221 NLALSRGMGITRSLAAEVLKET 242
              ++    I+   A   L + 
Sbjct: 230 FAEVAEEACISLETARYGLDQL 251


>gi|260578433|ref|ZP_05846347.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC
           43734]
 gi|258603455|gb|EEW16718.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC
           43734]
          Length = 796

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 49/206 (23%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    F+        + +                   
Sbjct: 202 RGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFKQAKENSP 261

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     D  +LM A   P     
Sbjct: 262 CIIFVDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGDRDGVILMAATNRPDILDP 321

Query: 154 CL--------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197
            L              PDL  R +   V   + P   D  L+ +  +        ++  L
Sbjct: 322 ALLRPGRFDRQIPVTNPDLAGREQILNVHAKNKPLAKDVDLKSLAKRTAGMSGADLENVL 381

Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221
             AA +  R++ +++ A+ L +  D 
Sbjct: 382 NEAALLTARVDGNVITADALEEATDR 407


>gi|256044856|ref|ZP_05447760.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565542|ref|ZP_05836026.1| ATPase [Brucella melitensis bv. 1 str. 16M]
 gi|265991283|ref|ZP_06103840.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151610|gb|EEW86704.1| ATPase [Brucella melitensis bv. 1 str. 16M]
 gi|263002067|gb|EEZ14642.1| recombination factor protein RarA [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 437

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 49  ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +        + +D +  A +++  +     A  L +++  
Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218

Query: 222 L 222
            
Sbjct: 219 A 219


>gi|229493645|ref|ZP_04387430.1| recombination factor protein RarA [Rhodococcus erythropolis SK121]
 gi|229319606|gb|EEN85442.1| recombination factor protein RarA [Rhodococcus erythropolis SK121]
          Length = 470

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 23/154 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA++ S  +   RF  ++ +L + + + R  + L    LL+   T L
Sbjct: 83  VLLYGPPGTGKTTLASLISGATG-RRFEALS-ALSAGVKEVRGVIELARRRLLNGEQTVL 140

Query: 127 F----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  +        +  +    LL+ A T   S+ V    L SR   + V+++    
Sbjct: 141 FIDEVHRFSKTQQDALLAAVENRIVLLVGATTENPSFSVVSA-LLSR---SLVLQLQSLT 196

Query: 175 DDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203
              +++++ +  AD R     I ID     ++V+
Sbjct: 197 AADVQELLERAVADERGFGGAITIDDDAMEHLVR 230


>gi|282850967|ref|ZP_06260341.1| ABC transporter, ATP-binding protein [Lactobacillus gasseri 224-1]
 gi|282557919|gb|EFB63507.1| ABC transporter, ATP-binding protein [Lactobacillus gasseri 224-1]
          Length = 319

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 23/84 (27%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           + +LVGPSGSGK+ L  ++                + ++  T+  +LL+D  + +++  +
Sbjct: 29  IFVLVGPSGSGKTTLLKMF----------------NRLIEPTKGEILLDDKSIKEYDLRK 72

Query: 126 LFHIINSIHQYDSSLLMTARTFPV 149
           L        +    +L TA  FP 
Sbjct: 73  L-------REKTGYVLQTASLFPN 89


>gi|255588063|ref|XP_002534493.1| ATP-binding cassette transporter, putative [Ricinus communis]
 gi|223525196|gb|EEF27890.1| ATP-binding cassette transporter, putative [Ricinus communis]
          Length = 572

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----LDSILIDTRKPVLLEDI-- 116
           P  ++ ++GPSGSGKS L N  + + +   F+    +    L+  ++     V  +DI  
Sbjct: 4   PGEILAILGPSGSGKSTLLNAIAGRIQGNGFTGTVLANNKKLNKHILKRTGFVTQDDILY 63

Query: 117 DLLDFNDTQLF 127
             L   +T +F
Sbjct: 64  PHLTVRETLIF 74


>gi|224125622|ref|XP_002329677.1| predicted protein [Populus trichocarpa]
 gi|222870585|gb|EEF07716.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ ++  +
Sbjct: 514 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 545


>gi|315230689|ref|YP_004071125.1| replication factor C large subunit [Thermococcus barophilus MP]
 gi|315183717|gb|ADT83902.1| replication factor C large subunit [Thermococcus barophilus MP]
          Length = 503

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 34/187 (18%)

Query: 48  AIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD---- 101
           A+E+    I  W     +   ++L GP GSGK+      +++ +       A        
Sbjct: 23  ALEKVEAWIKQWVHGTPKKKALLLAGPPGSGKTTTVYALANEYKFEVIELNASDERTFEK 82

Query: 102 -----------SILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTAR---T 146
                       I    RK + L++ D ++ +   ++  +I+        ++M A     
Sbjct: 83  IRRYLDAAYTMDIFGRRRKLIFLDEADNIEPSGAHEIAKLIDRARN---PIIMAANKYWE 139

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P                A VV+        + + + ++     IF+ K++ A I +R  
Sbjct: 140 VPAEIRNK----------AEVVEYKRLTQRDIMQALFRIIKAEGIFVPKEIVAEIAKRAS 189

Query: 207 RSLVFAE 213
             L  A 
Sbjct: 190 GDLRAAI 196


>gi|121715916|ref|XP_001275567.1| mitochondrial AAA ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119403724|gb|EAW14141.1| mitochondrial AAA ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 956

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 685 PGLLLYGPPGTGKTLLAKAVARESGATVLE 714


>gi|116333674|ref|YP_795201.1| primosomal protein DnaI [Lactobacillus brevis ATCC 367]
 gi|116099021|gb|ABJ64170.1| Replicative DNA helicase loader DnaI [Lactobacillus brevis ATCC
           367]
          Length = 308

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 46  HSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
             A+  A+  ID++ + P R    + L G  G GK+ L    +++  +  FS       S
Sbjct: 136 AEALMAALDFIDAYEASPKRRHQALYLSGSFGVGKTYLLAAVANQLAADGFSTTLVHFPS 195

Query: 103 ILIDTRKPVL 112
             ++ +  + 
Sbjct: 196 FAVEMKNAIA 205


>gi|115384146|ref|XP_001208620.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196312|gb|EAU38012.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 956

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 683 PGLLLYGPPGTGKTLLAKAVARESGATVLE 712


>gi|47226373|emb|CAG09341.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 631

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 69/203 (33%), Gaps = 49/203 (24%)

Query: 47  SAIEQAVRLIDSWPSWP-------------SRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           + ++ A   I     WP              R ++L GP G+G++ LA+  + +  +   
Sbjct: 362 AGLDMAKAAIKEEILWPILRSDMFSGLAALPRSLLLFGPQGTGRTLLAHCMASQLGAAFL 421

Query: 94  SNIAKSLDS--------------ILIDTRKPVLL--------------EDIDLLDFNDTQ 125
              + +L +              ++   R+P ++              ED  L       
Sbjct: 422 QLNSSALVTKWLGKGDKIIQASFLVARCRQPAVVFIKEVDLLLSAQLGEDSPLSRLKAEL 481

Query: 126 LFHIINSIHQYDSSLLMTART-FPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIV 183
           L  + + +   +  +L+   T  P      L      RL       I LPD     ++I 
Sbjct: 482 LMQLDSILTSAEDHVLVVCSTNKPEEIPEALRRYFTKRLL------IPLPDGTARHQIIT 535

Query: 184 KMFADRQIFIDKKLAAYIVQRME 206
           ++ +     +  K  + +VQR E
Sbjct: 536 QLLSQHNYCLSDKEMSLLVQRTE 558


>gi|62290117|ref|YP_221910.1| recombination factor protein RarA [Brucella abortus bv. 1 str.
           9-941]
 gi|82700040|ref|YP_414614.1| recombination factor protein RarA [Brucella melitensis biovar
           Abortus 2308]
 gi|189024355|ref|YP_001935123.1| recombination factor protein RarA [Brucella abortus S19]
 gi|254689426|ref|ZP_05152680.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870]
 gi|254693911|ref|ZP_05155739.1| recombination factor protein RarA [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697561|ref|ZP_05159389.1| recombination factor protein RarA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730455|ref|ZP_05189033.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292]
 gi|256257672|ref|ZP_05463208.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68]
 gi|260546665|ref|ZP_05822404.1| ATPase [Brucella abortus NCTC 8038]
 gi|260754949|ref|ZP_05867297.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870]
 gi|260758165|ref|ZP_05870513.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292]
 gi|260761991|ref|ZP_05874334.1| recombination factor protein RarA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883958|ref|ZP_05895572.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68]
 gi|261214202|ref|ZP_05928483.1| recombination factor protein RarA [Brucella abortus bv. 3 str.
           Tulya]
 gi|297248512|ref|ZP_06932230.1| recombination factor protein RarA [Brucella abortus bv. 5 str.
           B3196]
 gi|62196249|gb|AAX74549.1| ATPase, AAA family [Brucella abortus bv. 1 str. 9-941]
 gi|82616141|emb|CAJ11184.1| Shikimate kinase:Replication factor C conserved
           domain:ATP/GTP-binding site motif A (P-loop):AAA
           ATPase:AAA ATPase, central r [Brucella melitensis biovar
           Abortus 2308]
 gi|189019927|gb|ACD72649.1| ATPase, AAA family [Brucella abortus S19]
 gi|260095715|gb|EEW79592.1| ATPase [Brucella abortus NCTC 8038]
 gi|260668483|gb|EEX55423.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292]
 gi|260672423|gb|EEX59244.1| recombination factor protein RarA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675057|gb|EEX61878.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870]
 gi|260873486|gb|EEX80555.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68]
 gi|260915809|gb|EEX82670.1| recombination factor protein RarA [Brucella abortus bv. 3 str.
           Tulya]
 gi|297175681|gb|EFH35028.1| recombination factor protein RarA [Brucella abortus bv. 5 str.
           B3196]
          Length = 437

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 49  ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +        + +D +  A +++  +     A  L +++  
Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218

Query: 222 L 222
            
Sbjct: 219 A 219


>gi|52081252|ref|YP_080043.1| Holliday junction DNA helicase RuvB [Bacillus licheniformis ATCC
           14580]
 gi|52786632|ref|YP_092461.1| Holliday junction DNA helicase RuvB [Bacillus licheniformis ATCC
           14580]
 gi|319644781|ref|ZP_07999014.1| Holliday junction DNA helicase ruvB [Bacillus sp. BT1B_CT2]
 gi|59800222|sp|Q65GP6|RUVB_BACLD RecName: Full=Holliday junction DNA helicase ruvB
 gi|52004463|gb|AAU24405.1| Holliday junction DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52349134|gb|AAU41768.1| RuvB [Bacillus licheniformis ATCC 14580]
 gi|317392590|gb|EFV73384.1| Holliday junction DNA helicase ruvB [Bacillus sp. BT1B_CT2]
          Length = 334

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLAAIIANEMGVNLRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHR 115

Query: 127 FH 128
            H
Sbjct: 116 LH 117


>gi|33862949|ref|NP_894509.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634866|emb|CAE20852.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus str.
           MIT 9313]
          Length = 638

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 45/206 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS        + +                   
Sbjct: 215 RGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENTP 274

Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +           ND       QL   ++        +++ A   P     
Sbjct: 275 CLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDS 334

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      ++       V +  PD      ++     D+++  D  L   + +R      
Sbjct: 335 AL------MRPGRFDRQVSVDAPDIKGRLAILEVHARDKKLEEDLSLKN-VARRTP-GFT 386

Query: 211 FAEKLVDKMDNLAL--SRGMGITRSL 234
            A  L + ++  A+  +R      SL
Sbjct: 387 GA-DLANLLNEAAILTARRRKKAISL 411


>gi|332288868|ref|YP_004419720.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium
           anatis UMN179]
 gi|330431764|gb|AEC16823.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium
           anatis UMN179]
          Length = 415

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 21/127 (16%)

Query: 8   YSFFVPDKQKNDQPKNKEEQL-FFSFPRCLGISRDDLLVHSAIE------QAVRLIDSWP 60
           +   + +  K+ + + +E+ L     P  +    DD ++                     
Sbjct: 43  HDLLMEEANKHQKEQEQEKPLEKLPTPHQIRAHLDDYVIGQDQAKKILSVAVYNHYKRLR 102

Query: 61  SWPS--------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           +  +          ++L+GP+GSGK+ LA   + +       N+  ++      T    +
Sbjct: 103 NNETDLDVELGKSNILLIGPTGSGKTLLAQTLARQ------INVPFAIADATTLTEAGYV 156

Query: 113 LEDIDLL 119
            ED++ +
Sbjct: 157 GEDVENI 163


>gi|304439281|ref|ZP_07399198.1| replicative DNA helicase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372249|gb|EFM25838.1| replicative DNA helicase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 291

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           +IL+G  G GK+ LA+  ++       S    +   IL D                    
Sbjct: 140 LILIGNVGCGKTYLASAIANALLEKEISVKMTNFSVILNDMTNFEIDKSKYIDNLNHKKL 199

Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMT 143
           ++++D  +    D    HI N I   ++    L++T
Sbjct: 200 LIIDDFGMERDTDFAAEHIFNIIDSRYRSGKPLIIT 235


>gi|303233589|ref|ZP_07320247.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302495333|gb|EFL55081.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 285

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           +IL+G  G GK+ LA+  ++       S    +   IL D                    
Sbjct: 134 LILIGNVGCGKTYLASAIANALLEKEISVKMTNFSVILNDMTNFEIDKSKYIDNLNHKKL 193

Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMT 143
           ++++D  +    D    HI N I   ++    L++T
Sbjct: 194 LIIDDFGMERDTDFAAEHIFNIIDSRYRSGKPLIIT 229


>gi|296119822|ref|ZP_06838376.1| putative transposase [Corynebacterium ammoniagenes DSM 20306]
 gi|295966976|gb|EFG80247.1| putative transposase [Corynebacterium ammoniagenes DSM 20306]
          Length = 253

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 38/149 (25%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-------------- 103
           +W   P+ V +L  P+G+GK+ +A      +    +S     LD +              
Sbjct: 99  NWRETPTNVHLLA-PTGTGKTYIACAIGIAACHAGYSVAYFRLDQLVDALAVFLPADKRY 157

Query: 104 -----LIDTRKPVLLEDIDLLDFNDTQ-------LFHIINSIHQYDSSLLMTARTFPVSW 151
                L+     ++L+D   +  N          +F          S  ++T++T    W
Sbjct: 158 IDLVRLLQNVDVLILDDFLTIGINQRWQEDLTKIIFD-----RDGQSPTIVTSQTSAAYW 212

Query: 152 GVCLPD------LCSRLKAATVVKISLPD 174
              LPD      L SRL +   +     D
Sbjct: 213 LESLPDRVGADSLVSRLNSGQRISTGDYD 241


>gi|295109221|emb|CBL23174.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ruminococcus obeum A2-162]
          Length = 439

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 61/175 (34%), Gaps = 34/175 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VI  GP G+GK+ LA + +  + +            K ++ ++ + +  +       +  
Sbjct: 55  VIFYGPPGTGKTTLAKVIAHTTSANFTQINATVAGKKDMEQVVQEAQNNL------GMYG 108

Query: 122 NDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + +L+ A T    + V    L SR   + + +
Sbjct: 109 RKTILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SIIFE 164

Query: 170 ISLPDDDFLEKVIVKMFA--DRQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
           +     + +  ++++     DR +      ID     ++          A   V+
Sbjct: 165 LKALSTENIRTLLLRAVNDCDRGMGNYGAVIDNDALDFLADMAGGDARSALNAVE 219


>gi|295100781|emb|CBK98326.1| Recombination protein MgsA [Faecalibacterium prausnitzii L2-6]
          Length = 424

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 35/202 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112
             +I  GPSG+GK+ +A I ++ S  T                + K + ++       + 
Sbjct: 40  PNMIFYGPSGTGKTTVARIIAENSGMTLHKLNGTSCGTGDIKAVLKDIGTLAGAGGILLY 99

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-- 169
           L++I  L+      L   I    +  S  L+ + T    + +    L SR    TV +  
Sbjct: 100 LDEIQYLNKKQQQSLLECI----EDGSVTLIASTTENPYFYIYNA-LLSR---CTVFEFK 151

Query: 170 -ISLPD-DDFLEKVIVKMF-ADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMD---NL 222
            +S  D +  +   + K+  ++ Q + +D+   AY+    E +     K +  +D     
Sbjct: 152 SLSAADVERGIRNALKKLSESESQPVVMDEDACAYLA---ESAGGDLRKALGCLDFVVTA 208

Query: 223 AL--SRGMGITRSLAAEVLKET 242
           A     G  IT  +  +V + T
Sbjct: 209 APVDGTGKHITLEMIQQVTRRT 230


>gi|294631641|ref|ZP_06710201.1| cell division protein FtsH [Streptomyces sp. e14]
 gi|292834974|gb|EFF93323.1| cell division protein FtsH [Streptomyces sp. e14]
          Length = 644

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 77/224 (34%), Gaps = 60/224 (26%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    FS  A     +++                   
Sbjct: 203 RGVLLTGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKVAP 262

Query: 111 --VLLEDIDLLDF-----------NDTQLFHIINSIH--------QYDSSLLMTARTF-- 147
             + +++ID +             ++ +    +N I              +L        
Sbjct: 263 SIIFIDEIDTIGRARGGGASMGGHDERE--QTLNQILTEMDGFSGSEGVIVLAATNRADV 320

Query: 148 --PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
             P        D   R+     V+++ PD    E ++      R+I +   +    + R+
Sbjct: 321 LDPALTRPGRFD---RM-----VQVAPPDRGGREAIL--RIHTREIPLAPDVD---LNRV 367

Query: 206 ERSLVFA--EKLVDKMDNLAL----SRGMGITRSLAAEVLKETQ 243
            R+       +L +  +  AL     R   +T++  ++ L++ Q
Sbjct: 368 ARTTPGMTGAELANLANEAALLAVKRRQRQVTQTDFSQALEKVQ 411


>gi|259147695|emb|CAY80945.1| Rpt1p [Saccharomyces cerevisiae EC1118]
          Length = 467

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGTELVQKYVGEGARMVRE 293


>gi|296804514|ref|XP_002843109.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238845711|gb|EEQ35373.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 772

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 70/239 (29%), Gaps = 51/239 (21%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           P     S DD++V                    + +L GP G GK+  A   +D  R   
Sbjct: 544 PGSEKSSFDDIVVGKGKGL--------------IFLLYGPPGVGKTLTAESTADLLRRPL 589

Query: 93  FSNIAKSLDSILIDTRKP--------------VLLEDID-------LLDFNDTQLFHIIN 131
           +S  A        D                  +LL++ D       L       L  +  
Sbjct: 590 YSACAGDFGIKTEDLEGHLSRVLDLVRRWDAILLLDEADVFLSERSLQGLQHNALVSVFL 649

Query: 132 SIHQ--YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
              +       L T R          P + SR+     ++      D   +V  K  ++ 
Sbjct: 650 RSLEYFEGIMFLTTNRHS-----TLDPAMQSRIH--VSIRYESLSKDAKARVWKKQLSNA 702

Query: 190 QIFIDKKLAAYIVQRME--RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
              I       ++ +    R +    +        AL++G  +T +     LK  ++ D
Sbjct: 703 GAKISGTELERLLNKSSNGRQIKNIARA-----AFALAKGRTVTITHIETALKCAEEFD 756


>gi|257057516|ref|YP_003135348.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis
           DSM 43017]
 gi|256587388|gb|ACU98521.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis
           DSM 43017]
          Length = 798

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 74/239 (30%), Gaps = 55/239 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K K +QL    P          D          D L + A  QA+         P  V+ 
Sbjct: 155 KAKAKQLSKDMPTTTFKDVAGADEAVEELQEIKDFLQNPARYQALG-----AKIPKGVL- 208

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112
           L GP G+GK+ LA   + ++    ++        + +                     + 
Sbjct: 209 LYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEMFVGVGASRVRDLFEQAKQNAPCIIF 268

Query: 113 LEDIDLLDFNDTQLF---HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           +++ID +           H      + + +L            V +    SR     +  
Sbjct: 269 VDEIDAVGRQRGAGLGGGH-----DEREQTL--------NQLLVEMDGFDSRGGIILIAA 315

Query: 170 ISLPDDDFLEKVIVKMFADRQIFID-KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            + PD      ++     DRQI +    L     +R+       + L D +D  AL++ 
Sbjct: 316 TNRPD-ILDPALLRPGRFDRQIPVSAPDLVGR--RRILEVHSKGKPLADNVDLEALAKR 371


>gi|224088822|ref|XP_002308554.1| predicted protein [Populus trichocarpa]
 gi|222854530|gb|EEE92077.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 48/208 (23%)

Query: 59  WPSWPSRV----------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108
           +P W SR           V+LVGP G+GK+ LA   + ++    FS      + + +   
Sbjct: 250 FPLWSSRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVG 309

Query: 109 K----------------PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSL 140
                             + +++ID +  +              QL   ++   Q +  +
Sbjct: 310 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGII 369

Query: 141 LMTARTFPVSWGVCL--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           ++ A  FP S    L  P    R      + +  PD +   +++    +   I   + + 
Sbjct: 370 VIAATNFPESLDKALVRP---GRFD--RHIVVPNPDVEGRRQIMESHMSK--ILKGEDVD 422

Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSR 226
             I+ R       A  L + ++  AL  
Sbjct: 423 LMIIARGTPGFSGA-DLANLVNIAALKA 449


>gi|222086969|ref|YP_002545503.1| cell division metalloproteinase protein [Agrobacterium radiobacter
           K84]
 gi|221724417|gb|ACM27573.1| cell division metalloproteinase protein [Agrobacterium radiobacter
           K84]
          Length = 647

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 43/199 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    F+        + +                   
Sbjct: 192 RGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 251

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +            D  +  L  +   ++     +  +L+ A   P     
Sbjct: 252 CIIFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 311

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    E+++      R + +   +    + R      
Sbjct: 312 AL------LRPGRFDRQVVVPNPDIIGRERILKVHA--RNVPLAPNVDLKTLARGTPGFS 363

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L++ ++  AL     
Sbjct: 364 GA-DLMNLVNEAALMAARR 381


>gi|171690992|ref|XP_001910421.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945444|emb|CAP71556.1| unnamed protein product [Podospora anserina S mat+]
          Length = 460

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            GP G+GK+ LA   + ++ +T        L  + I     ++ +
Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRD 291


>gi|115970841|ref|XP_001190601.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 414

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 189 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARGK 248

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 249 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 308

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 309 DPALVRPGRLDRKVEFGLPDLEGR 332


>gi|50547001|ref|XP_500970.1| YALI0B16368p [Yarrowia lipolytica]
 gi|49646836|emb|CAG83223.1| YALI0B16368p [Yarrowia lipolytica]
          Length = 428

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P   ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 158 PLSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 195


>gi|67469879|ref|XP_650911.1| cdc48-like protein [Entamoeba histolytica HM-1:IMSS]
 gi|56467577|gb|EAL45523.1| cdc48-like protein, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 772

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 40/190 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           PS+ V+  GP G GK+ LA   + + ++   S                N+    D     
Sbjct: 509 PSKGVLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQA 568

Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
               +  +++D +                    QL   ++ + +     ++ A   P   
Sbjct: 569 APCVLFFDELDSIGRARGGGAGDAGGSADRILNQLLTEMDGVGKKKQVFIIGATNRPDIL 628

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMER-S 208
              L  L   RL       I LPD      ++      R   +   +   +I +  E  S
Sbjct: 629 DPAL--LRPGRLDQLLF--IPLPDKASRISILQ--AKLRNSPVAPDVDLDWIAEHTENFS 682

Query: 209 LVFAEKLVDK 218
                ++V +
Sbjct: 683 GADLAEIVQR 692



 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V+L GP G GK+ +A   ++++                      N+ ++      +
Sbjct: 236 PPKGVLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKN 295

Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + ++M A   P +    
Sbjct: 296 APALIFIDEIDSIAPKRDKAQGEVERRVVAQLLTLMDGMKSRSNVIVMAATNRPNAIDSA 355

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R  +    + I +PD+    +++      +++ I   +
Sbjct: 356 LR----RFGRFDREIDIGVPDETGRLEIL--NIHTKKMKIADDV 393


>gi|303391184|ref|XP_003073822.1| 26S proteasome regulatory subunit 6A [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302970|gb|ADM12462.1| 26S proteasome regulatory subunit 6A [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 401

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V++ GP G+GK+ +A   + K+ +T        L  + I     ++ +
Sbjct: 181 PPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRD 232


>gi|301117244|ref|XP_002906350.1| spastin and Fidgetin-like protein [Phytophthora infestans T30-4]
 gi|262107699|gb|EEY65751.1| spastin and Fidgetin-like protein [Phytophthora infestans T30-4]
          Length = 410

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R V+L GP G+GK+ LA   + ++++T F+  A SL S  +   + ++
Sbjct: 169 PPRGVLLFGPPGTGKTLLAKAVATEAKATFFNISASSLTSKWVGEGEKLV 218


>gi|154309232|ref|XP_001553950.1| hypothetical protein BC1G_07510 [Botryotinia fuckeliana B05.10]
 gi|150852334|gb|EDN27526.1| hypothetical protein BC1G_07510 [Botryotinia fuckeliana B05.10]
          Length = 823

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGVLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 372

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 373 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 412


>gi|157130112|ref|XP_001655566.1| spastin [Aedes aegypti]
 gi|108884449|gb|EAT48674.1| spastin [Aedes aegypti]
          Length = 338

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T FS  A +L S  +   + ++
Sbjct: 146 PAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLV 195


>gi|85373214|ref|YP_457276.1| recombination factor protein RarA [Erythrobacter litoralis
           HTCC2594]
 gi|84786297|gb|ABC62479.1| ATPase [Erythrobacter litoralis HTCC2594]
          Length = 440

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G+GK+  A + +D     RF  I+     +  D +K     D        T L
Sbjct: 60  MVLWGPPGTGKTSTARLLADAVG-MRFVAISAVFSGVA-DLKKAFAEADRMAAAGRKTLL 117

Query: 127 F----HIINSIHQYD 137
           F    H  N   Q  
Sbjct: 118 FVDEIHRFNRAQQDG 132


>gi|88808710|ref|ZP_01124220.1| cell division protein FtsH4 [Synechococcus sp. WH 7805]
 gi|88787698|gb|EAR18855.1| cell division protein FtsH4 [Synechococcus sp. WH 7805]
          Length = 620

 Score = 39.4 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 71/210 (33%), Gaps = 43/210 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 192 RGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAASEFVELFVGVGASRVRDLFRKAKEKSP 251

Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
             V +++ID +           ND       QL   ++        +L+ A         
Sbjct: 252 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFADNSGVILLAATNRADVLDT 311

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      ++       + + LPD    E ++      R +  +  LA +  +R      
Sbjct: 312 AL------MRPGRFDRRIAVGLPDRKGREAILAVHARTRPLAEEVSLADW-ARRTP-GFS 363

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            A  L + ++  A+      + +L  + L+
Sbjct: 364 GA-DLANLLNEAAILTARHQSTTLGNKELE 392


>gi|332372578|gb|AEE61431.1| unknown [Dendroctonus ponderosae]
          Length = 424

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PSR V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 123 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 179


>gi|330508645|ref|YP_004385073.1| AAA family ATPase [Methanosaeta concilii GP-6]
 gi|328929453|gb|AEB69255.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6]
          Length = 725

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 28/117 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P R V+L GP G+GK+ +A   + ++ +   S                 + +  D     
Sbjct: 214 PPRGVLLHGPPGTGKTLIARAVAGETDANFISISGPEIVSKFYGESEQRLRQIFDEASKA 273

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 Q+  +++ +      +++ A   P + 
Sbjct: 274 APSIIFIDEIDSIAPKREEVSGDLERRVVAQILSLMDGLSSRGEVIVIAATNRPNAL 330


>gi|330840857|ref|XP_003292425.1| hypothetical protein DICPUDRAFT_92867 [Dictyostelium purpureum]
 gi|325077347|gb|EGC31066.1| hypothetical protein DICPUDRAFT_92867 [Dictyostelium purpureum]
          Length = 405

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   +  + +     +        +    P L+ D+  L 
Sbjct: 185 PPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYL-GEGPRLVRDVFRLA 241


>gi|313888105|ref|ZP_07821779.1| DNA replication protein DnaC family protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845795|gb|EFR33182.1| DNA replication protein DnaC family protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 285

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 19/96 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           +IL G  G GK+ LA+  ++       S    +   IL D                    
Sbjct: 134 LILTGNVGCGKTYLASAIANALLEKEISVKMTNFSVILNDMTNFEIDKSKYIDNLNHKKL 193

Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMT 143
           ++++D  +    D    HI N I   ++    L++T
Sbjct: 194 LIIDDFGMERDTDFAAEHIFNIIDSRYRSGKPLIIT 229


>gi|302143742|emb|CBI22603.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 557 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 588


>gi|261885273|ref|ZP_06009312.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 318

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+  GP G GK+ LA+I +++  +    + A  ++           LE+ D+L  ++ 
Sbjct: 55  VLFYGPPGLGKTTLAHIIANEMGANIKISSAPMIEKSGDLAAILTNLEEGDVLFIDEI 112


>gi|297564905|ref|YP_003683877.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946]
 gi|296849354|gb|ADH62369.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946]
          Length = 626

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP GSGK+ +A   + +++    +        + +      + +
Sbjct: 190 VLLVGPPGSGKTHIARAVAGEAKVPFITASGSDFVEMFVGVGAARVRD 237


>gi|227486513|ref|ZP_03916829.1| DNA replication protein [Anaerococcus lactolyticus ATCC 51172]
 gi|227235516|gb|EEI85531.1| DNA replication protein [Anaerococcus lactolyticus ATCC 51172]
          Length = 291

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 19/96 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           +IL G  G GK+ LA+  ++       S    +   IL D                    
Sbjct: 140 LILTGNVGCGKTYLASAIANALLEKEISVKMTNFSVILNDMTNFEIDKSKYIDNLNHKKL 199

Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMT 143
           ++++D  +    D    HI N I   ++    L++T
Sbjct: 200 LIIDDFGMERDTDFAAEHIFNIIDSRYRSGKPLIIT 235


>gi|227500552|ref|ZP_03930601.1| DNA replication protein [Anaerococcus tetradius ATCC 35098]
 gi|227217344|gb|EEI82676.1| DNA replication protein [Anaerococcus tetradius ATCC 35098]
          Length = 294

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 19/96 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           +IL G  G GK+ LA+  ++       S    +   IL D                    
Sbjct: 140 LILTGNVGCGKTYLASAIANALLEKEISVKMTNFSVILNDMTNFEIDKSKYIDNLNHKKL 199

Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMT 143
           ++++D  +    D    HI N I   ++    L++T
Sbjct: 200 LIIDDFGMERDTDFAAEHIFNIIDSRYRSGKPLIIT 235


>gi|195573329|ref|XP_002104646.1| GD21056 [Drosophila simulans]
 gi|229559930|sp|B4QSF0|SPAST_DROSI RecName: Full=Spastin
 gi|194200573|gb|EDX14149.1| GD21056 [Drosophila simulans]
          Length = 758

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 34/186 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++          
Sbjct: 515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 574

Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAA 165
                 ++++D L    +   H   +  +  +  L+     P +     PD   R+   A
Sbjct: 575 QPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGN-----PD-GDRIVVLA 626

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              +    D+  L +   +++       D++    ++ R+       +K    +D  AL 
Sbjct: 627 ATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDTEALR 677

Query: 226 RGMGIT 231
           R   IT
Sbjct: 678 RLAKIT 683


>gi|195346897|ref|XP_002039991.1| GM15603 [Drosophila sechellia]
 gi|194135340|gb|EDW56856.1| GM15603 [Drosophila sechellia]
          Length = 739

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D +L+    
Sbjct: 339 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 381


>gi|161528596|ref|YP_001582422.1| ATPase central domain-containing protein [Nitrosopumilus maritimus
           SCM1]
 gi|160339897|gb|ABX12984.1| AAA ATPase central domain protein [Nitrosopumilus maritimus SCM1]
          Length = 397

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
            WP   ++L GP G+GK+ LA   +++      +  A S+
Sbjct: 147 GWPKG-MLLYGPPGTGKTMLAAATANEMDGYFINVDASSM 185


>gi|19074751|ref|NP_586257.1| 26S PROTEASOME REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1)
           [Encephalitozoon cuniculi GB-M1]
 gi|74697503|sp|Q8SR13|PRS6A_ENCCU RecName: Full=26S protease regulatory subunit 6A
 gi|19069393|emb|CAD25861.1| 26S PROTEASOME REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1)
           [Encephalitozoon cuniculi GB-M1]
          Length = 401

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V++ GP G+GK+ +A   + K+ +T        L  + I     ++ +
Sbjct: 181 PPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRD 232


>gi|254252991|ref|ZP_04946309.1| hypothetical protein BDAG_02239 [Burkholderia dolosa AUO158]
 gi|124895600|gb|EAY69480.1| hypothetical protein BDAG_02239 [Burkholderia dolosa AUO158]
          Length = 436

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 22/170 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ L+ + +        +  A       I        + ++    + T L
Sbjct: 50  MILWGPPGVGKTTLSRLTALAFDCEFIALSAVLGGVKDIRDAMEQAKDTLNRTGRH-TIL 108

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +      + A T   S+ V    L SR   A V  +    
Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLT 164

Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           DD + +++ +    A   +  D      ++   +     A + ++ ++  
Sbjct: 165 DDEMRQLLKRAQDIALDGLAFDDNAVDTLIGYAD---GDARRFLNLLEQA 211


>gi|328768252|gb|EGF78299.1| hypothetical protein BATDEDRAFT_20446 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 435

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +T    I   L    +     ++          
Sbjct: 210 PPKGVLLYGPPGTGKTLSARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 269

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                  +++D +                  +  +IN +     + +  +LM        
Sbjct: 270 KACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 330 DPALMRPGRLDRKVEFNLPDLEGR 353


>gi|317492908|ref|ZP_07951332.1| ATP-dependent Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919030|gb|EFV40365.1| ATP-dependent Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 423

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P +++N  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERNALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|262171856|ref|ZP_06039534.1| ATPase AAA family [Vibrio mimicus MB-451]
 gi|261892932|gb|EEY38918.1| ATPase AAA family [Vibrio mimicus MB-451]
          Length = 449

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQY 136
           F    H  N   Q 
Sbjct: 112 FVDEVHRFNKSQQD 125


>gi|255261736|ref|ZP_05341078.1| helper protein [Thalassiobium sp. R2A62]
 gi|255104071|gb|EET46745.1| helper protein [Thalassiobium sp. R2A62]
          Length = 168

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 34/148 (22%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVR------LIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           FP    ++  D       E  VR       I++  +     V+L+G  G+GKS +A    
Sbjct: 26  FPSYKDLAGFDFASSDINEATVRQLHRGEFIENAEN-----VVLIGGPGTGKSHVATAIG 80

Query: 86  DKS-----------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND----------- 123
            ++            +    N  +   ++    +   +L  IDL+  ++           
Sbjct: 81  VQAIEHHRRKVRFYSTVELVNALEYEKALGKAGKIAEMLTKIDLVILDELGYLPFSRSGG 140

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSW 151
             LFH+++ +++  +S+++T       W
Sbjct: 141 ALLFHLLSKLYER-TSVVITTNLSFSEW 167


>gi|213420144|ref|ZP_03353210.1| chromosomal replication initiation protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 89

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%)

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
           +++K   +  I +  ++A +I +R+  ++   E  ++++   A   G  IT     E L+
Sbjct: 1   ILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALR 60

Query: 241 ET 242
           + 
Sbjct: 61  DL 62


>gi|224011577|ref|XP_002295563.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583594|gb|ACI64280.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 428

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            RV+ + GP  SGK+ LA     +++ +         +  L       L  DID L  + 
Sbjct: 121 GRVIEIYGPESSGKTTLALHALAEAQQSGGIAAFVDAEHALDPAYAAALGVDIDSLLVSQ 180


>gi|194288885|ref|YP_002004792.1| recombination factor protein rara [Cupriavidus taiwanensis LMG
           19424]
 gi|193222720|emb|CAQ68723.1| recombination helicase ATPase [Cupriavidus taiwanensis LMG 19424]
          Length = 464

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 20/135 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +IL GP G GK+ LA + +D   +   +              + ++        R  V +
Sbjct: 54  MILWGPPGVGKTTLARLMADAFDAEFIALSAVLSGVKDIREAVERAEQFRAHGRRTLVFV 113

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +      + A T   S+ V    L SR   A V  +   
Sbjct: 114 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKSL 166

Query: 174 DDDFLEKVIVKMFAD 188
           DD  L ++ ++   +
Sbjct: 167 DDAELTQLALRASEE 181


>gi|158291141|ref|XP_312634.4| AGAP002334-PA [Anopheles gambiae str. PEST]
 gi|157018233|gb|EAA07487.4| AGAP002334-PA [Anopheles gambiae str. PEST]
          Length = 573

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T FS  A +L S  +   + ++
Sbjct: 330 PAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLV 379


>gi|56698546|ref|YP_168922.1| type I secretion system ATPase [Ruegeria pomeroyi DSS-3]
 gi|56680283|gb|AAV96949.1| type I secretion system ATPase [Ruegeria pomeroyi DSS-3]
          Length = 577

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + + ++GPSGSGKS LA      +   R +     LD   +D   P +L         
Sbjct: 359 PGQAIGVIGPSGSGKSTLAR---ALTGVWRPAGGTVRLDGAALDQYDPDVLGQHIGYLPQ 415

Query: 123 DTQLFH---IINSIHQYDSS-----LLMTARTFPVSWGVCLPD 157
             QLF      N             +    +       + LPD
Sbjct: 416 RVQLFEGTIAENIARLSGKPDAKKVVEAATKAAVHDMILQLPD 458


>gi|58616546|ref|YP_195676.1| transposion helper protein, ATP-binding protein [Azoarcus sp. EbN1]
 gi|56316009|emb|CAI10652.1| transposion helper protein, ATP-binding protein [Aromatoleum
           aromaticum EbN1]
          Length = 255

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 27/146 (18%)

Query: 31  SFPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC----LAN 82
           + P    +S  D      V  A   A+   DSW       ++L GP G GK+     L +
Sbjct: 57  ALPPDKRLSAFDFAAVPTVSKAHVTALAEGDSWLE-QGANILLFGPPGVGKTHLIAGLGH 115

Query: 83  IWSDKSRSTRFS--------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ--- 125
              ++     F+              ++    +   +D    ++ +D   +  +  +   
Sbjct: 116 ALVERGYRVLFTRTSDLVQRLQAARRDLRLPAELARLDRFDLLICDDFSYVRRDQGETSV 175

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151
           LF +I +      SL +TA      W
Sbjct: 176 LFELI-AERYERKSLAITANQPFSGW 200


>gi|71748282|ref|XP_823196.1| proteasome regulatory ATPase subunit 6 [Trypanosoma brucei TREU927]
 gi|70832864|gb|EAN78368.1| proteasome regulatory ATPase subunit 6 [Trypanosoma brucei]
 gi|261333101|emb|CBH16096.1| 19S proteasome regulatory subunit [Trypanosoma brucei gambiense
           DAL972]
          Length = 408

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 187 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARLVRE 234


>gi|323333485|gb|EGA74879.1| Msp1p [Saccharomyces cerevisiae AWRI796]
          Length = 361

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   S
Sbjct: 126 PSGVL-LYGPPGCGKTMLAKALAKESGANFIS 156


>gi|254584580|ref|XP_002497858.1| ZYRO0F15136p [Zygosaccharomyces rouxii]
 gi|238940751|emb|CAR28925.1| ZYRO0F15136p [Zygosaccharomyces rouxii]
          Length = 566

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 51/214 (23%)

Query: 65  RVVILVGPSGSGKSCLANIW------------------SDKSRSTRFSNIAKSL--DSIL 104
             ++L GP G GK+ LA +                   + K+ +    +I      D  L
Sbjct: 165 PSMVLWGPPGVGKTTLARLLTKTASVHGKFQYTMIETSATKANTQELRSIFDKSKNDFHL 224

Query: 105 IDTRKPVLLEDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCS 160
              R  + +++I   +     L   H+ N        +L+  T              L S
Sbjct: 225 TKRRTVLFIDEIHRFNKGQQDLLLPHVEN-----GDIVLIGATTENPSFQLNNA---LIS 276

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFA-----DRQ-------IFIDKKLAAYIVQRMERS 208
           R     V  +     +    V+ +  A      R        + + + +  YIV   + S
Sbjct: 277 R---CHVFVLEQLSTNEACIVLSRGIALLNKCRRNVWGVDIPLKLPRSILEYIV---DLS 330

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +    + ++ ++ + +S    I R L+   +K+ 
Sbjct: 331 VGDTRRALNLLEMVEISS-RSIDRELSKHDVKKM 363


>gi|225464694|ref|XP_002277491.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 831

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 551 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 582


>gi|254424623|ref|ZP_05038341.1| hypothetical protein S7335_4783 [Synechococcus sp. PCC 7335]
 gi|196192112|gb|EDX87076.1| hypothetical protein S7335_4783 [Synechococcus sp. PCC 7335]
          Length = 1053

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 19/29 (65%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST 91
            R+++L+G SG+GK+ L  ++ +++   
Sbjct: 62 SGRILLLLGESGAGKTHLMRVFRNQTHGR 90


>gi|163840727|ref|YP_001625132.1| recombination factor protein RarA [Renibacterium salmoninarum ATCC
           33209]
 gi|162954203|gb|ABY23718.1| ATPase, AAA family [Renibacterium salmoninarum ATCC 33209]
          Length = 462

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 29/176 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA++ +          S I   +  +       +   D+       T
Sbjct: 69  LILWGPPGTGKTTLAHVIARGPGRSFVELSAITAGVKDVRKVMDDALTASDLHGRT---T 125

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H              +    +L+ A T   S+ V  P     L  + ++ +  
Sbjct: 126 VLFLDEIHRFTKAQQDALLPGVENRWVVLVAATTENPSFSVVAPL----LSRSLLLTLQP 181

Query: 173 PDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             D  +  +IV+   D R     + +      ++V+        A + +  ++  A
Sbjct: 182 LTDADIRALIVRAVIDPRGLDGSLELSDDALDHLVRLAS---GDARRALTTLEAAA 234


>gi|170586148|ref|XP_001897842.1| Probable 26S protease regulatory subunit S10B [Brugia malayi]
 gi|158594737|gb|EDP33319.1| Probable 26S protease regulatory subunit S10B, putative [Brugia
           malayi]
          Length = 467

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|225462866|ref|XP_002270573.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 653

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 38 ISRDDLLVHSAIEQ--AVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
          ++ +DL V ++  +  +  L+     +  P  V+ ++GPSG GKS L +  + +  S  
Sbjct: 24 LTWEDLSVTASNGKGGSRLLLQGLTGFARPGEVLAIMGPSGCGKSTLLDALAGRLGSNI 82


>gi|150865091|ref|XP_001384164.2| replication factor ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149386347|gb|ABN66135.2| replication factor ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 786

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             ++L GP G GK+ +A+I +++        S  A ++  +  D    ++ E+       
Sbjct: 59  PSMLLYGPPGVGKTTMASIIAEECGYVFVELSATAATVADLR-DLSTTIMAENRKRASRG 117

Query: 123 DTQL 126
           + +L
Sbjct: 118 EEEL 121


>gi|147863177|emb|CAN82969.1| hypothetical protein VITISV_013416 [Vitis vinifera]
          Length = 658

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 38  ISRDDLLVHSAIEQ--AVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           ++ +DL V ++  +  +  L+     +  P  V+ ++GPSG GKS L +  + +  S  
Sbjct: 58  LTWEDLSVTASNGKGGSRLLLQGLTGFARPGEVLAIMGPSGCGKSTLLDALAGRLGSNI 116


>gi|6056413|gb|AAF02877.1|AC009525_11 Unknown protein [Arabidopsis thaliana]
          Length = 1217

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 47/165 (28%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
            P++ ++L GP G+GK+ LA   + ++ +   +    S+ S                    
Sbjct: 949  PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 1008

Query: 107  TRKPVLLEDIDLL------DFNDTQL------FHIIN----SIHQYDSSLLMTA------ 144
                + ++++D +            +      F +IN         +  L++ A      
Sbjct: 1009 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF-MINWDGLRTKDKERVLVLAATNRPFD 1067

Query: 145  ------RTFPVSWGVCLPDL--CSRLKAATVVKISLPDDDFLEKV 181
                  R  P    V LPD    S++ +  + K  + +D  LE +
Sbjct: 1068 LDEAVIRRLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAI 1112


>gi|121998434|ref|YP_001003221.1| recombinase A [Halorhodospira halophila SL1]
 gi|166220650|sp|A1WXK7|RECA_HALHL RecName: Full=Protein RecA; AltName: Full=Recombinase A
 gi|121589839|gb|ABM62419.1| recA protein [Halorhodospira halophila SL1]
          Length = 354

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 64  SRVVILVGPSGSGKSCL-ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--- 119
            RVV + GP  SGK+ L  +I ++  ++   +    +  ++  D  + V ++  DLL   
Sbjct: 60  GRVVEIYGPESSGKTTLTLHIIAEAQKAGGAAAFVDAEHALDPDYAEAVGVDINDLLVSQ 119

Query: 120 -DFNDTQL 126
            D  +  L
Sbjct: 120 PDTGEQAL 127


>gi|71665751|ref|XP_819842.1| proteasome regulatory ATPase subunit [Trypanosoma cruzi strain CL
           Brener]
 gi|70885161|gb|EAN97991.1| proteasome regulatory ATPase subunit, putative [Trypanosoma cruzi]
          Length = 404

 Score = 39.4 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 183 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARLVRE 230


>gi|323304947|gb|EGA58704.1| Msp1p [Saccharomyces cerevisiae FostersB]
          Length = 361

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   S
Sbjct: 126 PSGVL-LYGPPGCGKTMLAKALAKESGANFIS 156


>gi|302348206|ref|YP_003815844.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
 gi|302328618|gb|ADL18813.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
          Length = 740

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 73/202 (36%), Gaps = 51/202 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P + V+L GP G+GK+ LA   + +S +   +               + L  I  + +  
Sbjct: 223 PPKGVLLYGPPGTGKTLLAKAVATESDAYFVAINGPEIMSKFYGESEQRLREIFEEAKKN 282

Query: 109 --KPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +    ++           QL  +++ +      +++ A   P +    
Sbjct: 283 APAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLALMDGLEGRGQVIVIGATNRPNAIDPA 342

Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
           L              PD   RL+        + L DD  L     K+    + +    LA
Sbjct: 343 LRRPGRFDREIEVPVPDKQGRLEILQIHTRHMPLADDVDL----EKLAEMTKGYTGADLA 398

Query: 199 AYIVQRMERSLVFAEKLVDKMD 220
           A + +  E ++    + + ++D
Sbjct: 399 A-LAK--EAAMHALRRYLPEID 417



 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 496 PPKGVLLFGPPGTGKTMLAKAVATESGANFIA 527


>gi|298706628|emb|CBJ29566.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 876

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
            R ++L GP+GSGKS LA     +  +   SN    +D     +  P+L   +D
Sbjct: 422 DRPILLYGPAGSGKSLLA-----REAARLISNSGDGVDPEPGASSTPLLELHLD 470


>gi|296454576|ref|YP_003661719.1| AAA ATPase [Bifidobacterium longum subsp. longum JDM301]
 gi|296184007|gb|ADH00889.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 459

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 28/144 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA I + +S          ++  K +  +L    + ++         
Sbjct: 63  VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 116

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 117 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 172

Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192
           +   + D   E V   +  DR + 
Sbjct: 173 LESLEPDQLTELVQRALTDDRGLK 196


>gi|223986985|ref|ZP_03636942.1| hypothetical protein HOLDEFILI_04268 [Holdemania filiformis DSM
           12042]
 gi|223961047|gb|EEF65602.1| hypothetical protein HOLDEFILI_04268 [Holdemania filiformis DSM
           12042]
          Length = 273

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 26/112 (23%)

Query: 67  VILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILID------------TRKP 110
           ++L G  G+GKS  A   +    ++  +   +N A  L+ +               +   
Sbjct: 118 LLLWGKVGTGKSYFAGCIANALMEREIAVCMTNFALILNDLAASFKDRNEYISRLCSFPL 177

Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFPVSWGVCLPDLC 159
           ++L+D  +    +  L  + N I   ++ +  L++T         + L DL 
Sbjct: 178 LILDDFGMERGTEYGLEQVYNVIDSRYRSNKPLIVTT-------NLTLEDLQ 222


>gi|222624912|gb|EEE59044.1| hypothetical protein OsJ_10811 [Oryza sativa Japonica Group]
          Length = 1068

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 45/164 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + ++L GP G+GK+ LA   + ++ +              F    K + ++       
Sbjct: 800 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSISSKWFGEGEKFVKAVFSLASKI 859

Query: 109 --KPVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144
               + ++++D +            +  + N              +  L++ A       
Sbjct: 860 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 919

Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181
                R  P    V LPD  +R  + +  + K  L DD  LE V
Sbjct: 920 DEAVVRRLPRRLMVNLPDASNRRKILSVILAKEDLADDVDLEAV 963


>gi|237843861|ref|XP_002371228.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma
           gondii ME49]
 gi|211968892|gb|EEB04088.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma
           gondii ME49]
 gi|221483823|gb|EEE22135.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma
           gondii GT1]
          Length = 565

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 20/99 (20%)

Query: 23  NKEEQLFFSF---PRCLGISRDDLLVH---SAIEQAVRLIDSWPS------------WPS 64
              EQ+   F   P  +  + D  +V    +    A+ L D W               P+
Sbjct: 61  EPAEQID-DFTKDPDEIVAALDKYIVGQDTAKKSLAIALRDRWRRQQVKDEKLRREIAPN 119

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
             ++L+GPSG GK+ LA   +  + +      A     +
Sbjct: 120 N-LLLIGPSGCGKTELAKRLAAFAGAPFVKVAATRFTEV 157


>gi|159487319|ref|XP_001701670.1| AAA-ATPase of VPS4/SKD1 family [Chlamydomonas reinhardtii]
 gi|158280889|gb|EDP06645.1| AAA-ATPase of VPS4/SKD1 family [Chlamydomonas reinhardtii]
          Length = 436

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P   ++L GP G+GKS LA   + ++ ST FS  ++ L S  +   + ++
Sbjct: 161 PWSGILLYGPPGTGKSYLAKAVATEADSTFFSVSSQDLVSKWLGESEKLV 210


>gi|24461660|gb|AAN62229.1|AF440524_16 putative NTP-binding protein of insertion sequence [Pseudomonas
           aeruginosa]
          Length = 247

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 22/106 (20%)

Query: 67  VILVGPSGSGKSCLA------NIWSDK----SRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           +ILVG +G+GK+ LA       I   K      +    N  +              L+ I
Sbjct: 100 LILVGGTGTGKTHLATALGVGAIHQGKRVRFYNAVDLVNHLEREKQQGKAGNLAKQLQHI 159

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
           D +  ++             LFH+I+ +++  +SL++T       W
Sbjct: 160 DAVILDELGYLPFPDSGGALLFHLISQLYE-KTSLIVTTNLSFGEW 204


>gi|82617273|emb|CAI64178.1| proteasome-activating nucleotidase (proteasome regulatroy subunit)
           [uncultured archaeon]
          Length = 440

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P + V+L GP G+GK+ LA   + ++ +T    +   L    I     ++ +  ++ 
Sbjct: 216 PPKGVLLFGPPGTGKTLLAKAVATRTEATFIRVVGSELVQKYIGEGARMVRDVFEMA 272


>gi|50549447|ref|XP_502194.1| YALI0C23749p [Yarrowia lipolytica]
 gi|49648061|emb|CAG82516.1| YALI0C23749p [Yarrowia lipolytica]
          Length = 383

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G GK+ LA   + +S +   +
Sbjct: 147 PPKGVLLYGPPGCGKTMLAKALAAESEANFIN 178


>gi|163846725|ref|YP_001634769.1| AAA ATPase [Chloroflexus aurantiacus J-10-fl]
 gi|222524536|ref|YP_002569007.1| AAA ATPase [Chloroflexus sp. Y-400-fl]
 gi|163668014|gb|ABY34380.1| AAA ATPase [Chloroflexus aurantiacus J-10-fl]
 gi|222448415|gb|ACM52681.1| AAA ATPase [Chloroflexus sp. Y-400-fl]
          Length = 350

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 11/98 (11%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR----FSNIAKSLDSIL 104
           +  A   ++       R ++L GPSGSG+S L    +  + +       +     L  + 
Sbjct: 24  LGAACEQLER-----RRPLLLYGPSGSGRSSLLTHLAQAAGAVLEIPNLNAFYLDLSLLP 78

Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142
                  L+  +  L  ++  +  +   +      +L+
Sbjct: 79  DAATTYGLI--VRALGGSEPTIAALEQRLAASGRPVLI 114


>gi|328883303|emb|CCA56542.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712]
          Length = 672

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 207 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 266

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 267 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 326

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P   D  L  V  +        +   L  
Sbjct: 327 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLGAVARRTPGFTGADLSNVLNE 386

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R ++ L+  + L + +D 
Sbjct: 387 AALLTARSDQKLIDNKALDEAIDR 410


>gi|328751836|gb|AEB39673.1| MIP17311p [Drosophila melanogaster]
          Length = 740

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D +L+    
Sbjct: 340 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 382


>gi|318607960|emb|CBY29458.1| Istb homolog, C-terminal fragment [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 241

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 21/107 (19%)

Query: 65  RVVILVGPSGSGKSCL---ANIWSDKSRS-TRFSNIAKSLDSILIDTRK----------- 109
           R +I VG  G+GK+ L     I +  +    RF N+   ++ + +D              
Sbjct: 99  RNIIFVGAPGTGKTHLVTALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 158

Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
              ++L+D+  L F+      LFH+I+ +H++ +S+++T       W
Sbjct: 159 LDLIVLDDLGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 204


>gi|300727152|ref|ZP_07060571.1| ATPase, AAA family [Prevotella bryantii B14]
 gi|299775696|gb|EFI72287.1| ATPase, AAA family [Prevotella bryantii B14]
          Length = 423

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 38/178 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-----------LIDTRKPV 111
              IL GP G GK+ LA+I ++K  +     S +   +  +             +T  P+
Sbjct: 40  PSFILWGPPGVGKTTLAHIIANKLETPFYTLSAVTSGVKDVREVIDKAAKSQFFNTISPI 99

Query: 112 L-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           L +++I     +    L        +  +  L+ A T   S+ V  P L SR     +  
Sbjct: 100 LFIDEIHRFSKSQQDSLL----GAVERGTVTLIGATTENPSFEVIRP-LLSR---CQLYV 151

Query: 170 ISLPDDDFLEKVIVKMFAD------RQIFIDK--KLAAYIVQRMERSLVFAEKLVDKM 219
           +   + D L  +I +   +      R I + +   L  Y       S   A KL++ +
Sbjct: 152 LKSLNKDDLLDLIHRALTEDVELKKRNIILKEHGALLRY-------SGGDARKLLNIL 202


>gi|294636938|ref|ZP_06715264.1| replication-associated recombination protein A [Edwardsiella tarda
           ATCC 23685]
 gi|291089856|gb|EFE22417.1| replication-associated recombination protein A [Edwardsiella tarda
           ATCC 23685]
          Length = 447

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 36/198 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +    +   R S +   +  I     +     D+        
Sbjct: 53  MILWGPPGTGKTTLAELIARYGHAEVERISAVTSGIKEIREAIERARQNRDVGRRTI--- 109

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 110 -LFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              +   + +V+ +  +D  R      + + ++    + + +      A   ++ M ++A
Sbjct: 163 KALEAQDIVQVLQQAMSDSERGYGGQDLLLPEETRDALAELVNGDARRALNTLEMMADMA 222

Query: 224 ---LSRGMGITRSLAAEV 238
                    +T  L   V
Sbjct: 223 EVDSQGQRRLTVDLLRAV 240


>gi|289616266|emb|CBI57062.1| unnamed protein product [Sordaria macrospora]
          Length = 1124

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
           +L GP G+GK+ LA   + +S +      A S++ +
Sbjct: 833 LLYGPPGTGKTLLAKAVAKESGANMLEVSAASINDM 868


>gi|260433268|ref|ZP_05787239.1| putative Cell division protease FtsH family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417096|gb|EEX10355.1| putative Cell division protease FtsH family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 610

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++LVGP G+GK+ LA   + ++  T FS        + +      + +  D    +   +
Sbjct: 192 ILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMFVGVGAARVRDLFDQARKSAPAI 251


>gi|253741395|gb|EES98266.1| 26S proteasome ATPase subunit S4, putative [Giardia intestinalis
           ATCC 50581]
          Length = 447

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P R  IL GPSG+GKS LA   ++++ +
Sbjct: 226 PPRSCILHGPSGTGKSLLARACANETSA 253


>gi|226290033|gb|EEH45517.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb18]
          Length = 553

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 78/219 (35%), Gaps = 38/219 (17%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------- 95
           LV  +      LI+         ++L G +G+GK+ +A + +    S             
Sbjct: 154 LVGPS-GVLRGLIEQDR---VPSMVLWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVA 209

Query: 96  -----IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149
                 A++ + + +  +K +L  ++I     +   +F  ++ +     +L+ T    P 
Sbjct: 210 ECKKLFAEARNELSLSGKKTILFCDEIHRFSKSQQDVF--LSPVESGQITLIGTTTENPS 267

Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQ 203
            + V    L SR        +S   D  +  ++ +              +D +L  Y+  
Sbjct: 268 -FKVQNA-LLSR---CRTFTLSKLKDQDIIMILNRALEVEGPNYSPSSLVDDELIKYLAA 322

Query: 204 RMERSLVFAEKLVD-KMD---NLALSR---GMGITRSLA 235
             +     +  L++  MD      +++      +TR+L 
Sbjct: 323 FADGDARTSLNLLELAMDLSHREGMTKDELKKSLTRTLV 361


>gi|260836933|ref|XP_002613460.1| hypothetical protein BRAFLDRAFT_119863 [Branchiostoma floridae]
 gi|229298845|gb|EEN69469.1| hypothetical protein BRAFLDRAFT_119863 [Branchiostoma floridae]
          Length = 441

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 68/206 (33%), Gaps = 45/206 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 219 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 278

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146
                 +++ID +                  +  ++N +     + D  ++M        
Sbjct: 279 APSIVFIDEIDAVGTKRYESNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 338

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
            P        D          ++  LPD+    ++     +   +  D  L  +I+ + +
Sbjct: 339 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFQIHTSRMTLAEDVNLEDFIMAKDD 390

Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231
            S    + +  +   +AL      +T
Sbjct: 391 LSGADIKAICTEAGLMALRERRMKVT 416


>gi|195488933|ref|XP_002092523.1| GE11626 [Drosophila yakuba]
 gi|194178624|gb|EDW92235.1| GE11626 [Drosophila yakuba]
          Length = 735

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D +L+    
Sbjct: 335 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 377


>gi|115948410|ref|XP_794594.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 409

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 184 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARGK 243

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 244 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 303

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 304 DPALVRPGRLDRKVEFGLPDLEGR 327


>gi|94498812|ref|ZP_01305358.1| ATPase [Sphingomonas sp. SKA58]
 gi|94421741|gb|EAT06796.1| ATPase [Sphingomonas sp. SKA58]
          Length = 439

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ ++ + +      RF  I+     +    +     +D        T L
Sbjct: 59  IIFWGPPGTGKTTISRLLAHAVG-MRFEPISAVFSGVADLKKVFAAAKD-HARHGEKTLL 116

Query: 127 F----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N           +  +  L+  T              L SR   A V+ +  
Sbjct: 117 FVDEIHRFNRAQQDSFLPFVENGTVTLVGATTENPSFELNAA---LLSR---AQVLILRR 170

Query: 173 PDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            D   LE+++ +     +R + +D      ++   +    F    V+ +
Sbjct: 171 LDAAALEQLLDRAEGLMERPLPLDPAAREALLASADGDGRFLLNQVETL 219


>gi|24658770|ref|NP_726263.1| CG3499 [Drosophila melanogaster]
 gi|15291271|gb|AAK92904.1| GH14313p [Drosophila melanogaster]
 gi|23240115|gb|AAM71132.2| CG3499 [Drosophila melanogaster]
 gi|220945266|gb|ACL85176.1| CG3499-PB [synthetic construct]
 gi|220954998|gb|ACL90042.1| CG3499-PB [synthetic construct]
          Length = 736

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+LVGP G+GK+ LA   + +++   F       D +L+    
Sbjct: 336 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 378


>gi|86137163|ref|ZP_01055741.1| type I secretion system ATPase [Roseobacter sp. MED193]
 gi|85826487|gb|EAQ46684.1| type I secretion system ATPase [Roseobacter sp. MED193]
          Length = 577

 Score = 39.4 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           P + + ++GPSGSGKS LA      + + R +     LD   +D   P +L
Sbjct: 359 PGQAIGVIGPSGSGKSTLAK---ALTGAWRPAAGTIRLDGAALDQYDPDVL 406


>gi|312142624|ref|YP_003994070.1| IstB domain protein ATP-binding protein [Halanaerobium sp.
           'sapolanicus']
 gi|311903275|gb|ADQ13716.1| IstB domain protein ATP-binding protein [Halanaerobium sp.
           'sapolanicus']
          Length = 251

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 24/120 (20%)

Query: 61  SWPSR--VVILVGPSGSGKSCLAN-------------IWSDKSRSTRFSNIAKSLDSI-- 103
           SW  R   ++L+GP+G GK+ L+              I++  S    +   A+ + S   
Sbjct: 96  SWLERGYNIVLLGPTGVGKTLLSIGLGIHAINEGYKVIFAAISDLIYWLKTAEMIRSSKT 155

Query: 104 ---LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
               +     ++++DI  +     +    F +IN ++   +S+++T+   P  WG  + D
Sbjct: 156 KLNRVLKCDLLIIDDIMFMAMEKQESNLFFQLINKLY-GQTSIIITSNKGPSDWGELIGD 214


>gi|308174475|ref|YP_003921180.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607339|emb|CBI43710.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554395|gb|AEB24887.1| Holliday junction DNA helicase RuvB [Bacillus amyloliquefaciens
           TA208]
 gi|328912800|gb|AEB64396.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           amyloliquefaciens LL3]
          Length = 334

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 114 -HRLNRSIEE 122


>gi|307243867|ref|ZP_07525992.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492689|gb|EFM64717.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 631

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 44/139 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 201 ALLVGPPGTGKTLLAQAVAGEAGVPFFSISGSEFVEMFVGMGASRVRDLFKQAKEKAPCI 260

Query: 111 VLLEDIDLLDFNDTQLF-------HIINSIH------QYD-SSLLMTARTFPVSW----- 151
           V +++ID +       F         +N +       +     +++ A   P S      
Sbjct: 261 VFIDEIDAIGKKRDANFGGNDEREQTLNQLLSEMDGFEDGIGVVILAATNRPDSLDKALL 320

Query: 152 ---------GVCLPDLCSR 161
                     V LPDL  R
Sbjct: 321 RPGRFDRRVPVELPDLNGR 339


>gi|293360848|ref|XP_235670.5| PREDICTED: rCG50526-like [Rattus norvegicus]
          Length = 649

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 43/178 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P R V+  GP G GK+ L    + +  +T                 A+ L +     R  
Sbjct: 424 PPRTVLFFGPRGCGKALLGRCLATRLGATLLRLRGAGLATSGAVEGARLLQAAFAAARCR 483

Query: 109 --KPVLLEDIDLL--DFNDTQ-----LFHIINS---IHQYDSSLLMTARTFPVSWGVCLP 156
               +L+ ++D L    +D       L   ++           ++ T             
Sbjct: 484 PPAVLLISELDALLPARDDGASLRAPLLTCLDGGCGARADGVLVVGTTSRPAAL------ 537

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           D  +R + A    ++LPD     +++ +  A +   +            ER L    +
Sbjct: 538 DEATRRRFALRFYVALPDGAARGQILQRALAQQGCVLS-----------ERELAALVQ 584


>gi|292670755|ref|ZP_06604181.1| primosome component [Selenomonas noxia ATCC 43541]
 gi|292647376|gb|EFF65348.1| primosome component [Selenomonas noxia ATCC 43541]
          Length = 199

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 21/132 (15%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
             D  +    + AV       +     + + G  G+GK+ LA I +++        +  S
Sbjct: 21  FADYDIMDGNKGAVAAAHLMIAGEIGGLFIHGVRGTGKTKLAAIIANERARAGHPVLFAS 80

Query: 100 LDSILIDTRKP------------------VLLEDIDLLDFND---TQLFHIINSIHQYDS 138
           +  ++ D R                    ++L+D+     ++    QLF I+N  +    
Sbjct: 81  VPDLMADIRGSFKDGSTSETVQAVKETPFLVLDDLGSEKMSEWVGEQLFCIVNYRYNERL 140

Query: 139 SLLMTARTFPVS 150
             ++T+   P  
Sbjct: 141 QTVVTSNYSPTQ 152


>gi|297741681|emb|CBI32813.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 37/201 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA +    +    FS                 + +  DS        
Sbjct: 437 VLLHGPPGTGKTSLAQLCICDAGVNLFSVNGAEIVSQYYGESEQALHEIFDSASQAAPAV 496

Query: 111 VLLEDIDLLD-----FNDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           V ++++D +        +         L ++++ I + D  L++ A   P S     P L
Sbjct: 497 VFIDELDAIAPARKDGGEELSHRIVATLLNLMDGISRTDGILVIAATNRPDSIE---PAL 553

Query: 159 C--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
               RL      +I +P       +++ + ++ +  +       +   +    V A  L 
Sbjct: 554 RRPGRLDREM--EIGVPSPGQRYDILLNLLSEMENSLSDMQIQQLAT-VTHGFVGA-DLA 609

Query: 217 DKMDNLALSRGMGITRSLAAE 237
              +  AL       +S   E
Sbjct: 610 ALCNEAALVCLRRYVKSFIME 630


>gi|261199738|ref|XP_002626270.1| mitochondrial chaperone bcs1 [Ajellomyces dermatitidis SLH14081]
 gi|239594478|gb|EEQ77059.1| mitochondrial chaperone bcs1 [Ajellomyces dermatitidis SLH14081]
          Length = 387

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 23/92 (25%)

Query: 63  PSRVVILV-GPSGSGKSCLANIWSDKSRSTRF----------SNIAKSLDSILIDTRKPV 111
           P R   L  GP G+GK+ LA   + K     +           +  + L S L D    +
Sbjct: 245 PYRRGYLFNGPPGTGKTSLAQALAGKFGLDIYLLSLTGQNMTDDELQWLCSQLPDYPCVL 304

Query: 112 LLEDIDLLDFNDTQ------------LFHIIN 131
           L+EDID     + +              H+ N
Sbjct: 305 LIEDIDRRVDKEVEFTLASEKQIESIFLHLYN 336


>gi|225377814|ref|ZP_03755035.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM
           16841]
 gi|225210325|gb|EEG92679.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM
           16841]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 45/141 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 242 ALLVGPPGTGKTLLAKAVAGEAGVPFFSLAGSDFVEMFVGVGASRVRDLFKEAQKQAPCI 301

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        L++ A   P      L
Sbjct: 302 IFIDEIDAIGKSRDSRYGGGNDEREQTLNQLLAEMDGFDTSKGLLILAATNRPEVLDKAL 361

Query: 156 --------------PDLCSRL 162
                         PDL  RL
Sbjct: 362 LRPGRFDRRIIVDKPDLKGRL 382


>gi|207724502|ref|YP_002254899.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2]
 gi|207727569|ref|YP_002255963.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2]
 gi|206589723|emb|CAQ36684.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2]
 gi|206590807|emb|CAQ56419.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2]
          Length = 262

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 93  ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 147

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 148 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 205

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 206 FTQWATAFAD 215


>gi|171778879|ref|ZP_02919941.1| hypothetical protein STRINF_00800 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282525|gb|EDT47949.1| hypothetical protein STRINF_00800 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 422

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 25/176 (14%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKS-------LDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +   K     F+    S        +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++     D 
Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSTDD 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           +++ +    +D  R     + ID     +I               + +D   +S  
Sbjct: 155 IKQALQTALSDKERGFEFDVDIDADALDFIATATN---GDLRSAFNSLDLAVMSTK 207


>gi|169831648|ref|YP_001717630.1| AAA family ATPase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638492|gb|ACA59998.1| AAA family ATPase, CDC48 subfamily [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 753

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 42/138 (30%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ +A   ++++ +  F                +N+    +    +    
Sbjct: 237 VLLHGPPGTGKTLIARAVANETDAHFFHVNGPEIIHKFYGESEANLRGIFEEAGKNAPSI 296

Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL--- 155
           + L++ID +                 QL  +++ +      +++ A   P S    L   
Sbjct: 297 IFLDEIDAIAPKRESVVGEVEKRVVAQLLGLMDGLESRGQVIVIGATNIPNSLDPALRRP 356

Query: 156 -----------PDLCSRL 162
                      PD  SRL
Sbjct: 357 GRFDREITVNIPDKKSRL 374


>gi|163796890|ref|ZP_02190847.1| AAA ATPase, central region [alpha proteobacterium BAL199]
 gi|159177879|gb|EDP62428.1| AAA ATPase, central region [alpha proteobacterium BAL199]
          Length = 403

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 22/131 (16%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
           IL GP G GK+ +A + ++ +        A    S + D +K              T LF
Sbjct: 21  ILWGPPGCGKTTIARLLAEHTDLEFVPLSAVF--SGVADLKKHFEAARGRRAGGRGTLLF 78

Query: 128 ----HIINSIHQYDSSLLM----------TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
               H  N   Q     ++          T              L SR     V  +   
Sbjct: 79  VDEVHRFNRAQQDGFLPVVEDGTITLVGATTENPSFELNAA---LLSR---CQVFVLRRL 132

Query: 174 DDDFLEKVIVK 184
           DD  L+K++ +
Sbjct: 133 DDAALDKLLAR 143


>gi|156039377|ref|XP_001586796.1| hypothetical protein SS1G_11825 [Sclerotinia sclerotiorum 1980]
 gi|154697562|gb|EDN97300.1| hypothetical protein SS1G_11825 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 430

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 160 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 197


>gi|150865539|ref|XP_001384798.2| hypothetical protein PICST_60303 [Scheffersomyces stipitis CBS
           6054]
 gi|149386795|gb|ABN66769.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 433

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+  ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 162 PTSGILLFGPPGTGKSYLAKAVATEANSTFFSVSSSDL 199


>gi|148559570|ref|YP_001259126.1| recombination factor protein RarA [Brucella ovis ATCC 25840]
 gi|163843471|ref|YP_001627875.1| recombination factor protein RarA [Brucella suis ATCC 23445]
 gi|225852702|ref|YP_002732935.1| recombination factor protein RarA [Brucella melitensis ATCC 23457]
 gi|254701946|ref|ZP_05163774.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513]
 gi|254706613|ref|ZP_05168441.1| recombination factor protein RarA [Brucella pinnipedialis
           M163/99/10]
 gi|254710277|ref|ZP_05172088.1| recombination factor protein RarA [Brucella pinnipedialis B2/94]
 gi|256031771|ref|ZP_05445385.1| recombination factor protein RarA [Brucella pinnipedialis
           M292/94/1]
 gi|256061286|ref|ZP_05451436.1| recombination factor protein RarA [Brucella neotomae 5K33]
 gi|256113760|ref|ZP_05454564.1| recombination factor protein RarA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159941|ref|ZP_05457659.1| recombination factor protein RarA [Brucella ceti M490/95/1]
 gi|256255172|ref|ZP_05460708.1| recombination factor protein RarA [Brucella ceti B1/94]
 gi|256263807|ref|ZP_05466339.1| ATPase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369630|ref|YP_003107140.1| ATPase, AAA family [Brucella microti CCM 4915]
 gi|260168905|ref|ZP_05755716.1| recombination factor protein RarA [Brucella sp. F5/99]
 gi|261222368|ref|ZP_05936649.1| recombination factor protein RarA [Brucella ceti B1/94]
 gi|261314073|ref|ZP_05953270.1| recombination factor protein RarA [Brucella pinnipedialis
           M163/99/10]
 gi|261317839|ref|ZP_05957036.1| recombination factor protein RarA [Brucella pinnipedialis B2/94]
 gi|261325293|ref|ZP_05964490.1| recombination factor protein RarA [Brucella neotomae 5K33]
 gi|261752514|ref|ZP_05996223.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513]
 gi|261758397|ref|ZP_06002106.1| ATPase [Brucella sp. F5/99]
 gi|265988869|ref|ZP_06101426.1| recombination factor protein RarA [Brucella pinnipedialis
           M292/94/1]
 gi|265995120|ref|ZP_06107677.1| recombination factor protein RarA [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998333|ref|ZP_06110890.1| recombination factor protein RarA [Brucella ceti M490/95/1]
 gi|148370827|gb|ABQ60806.1| ATPase, AAA family [Brucella ovis ATCC 25840]
 gi|163674194|gb|ABY38305.1| AAA ATPase central domain protein [Brucella suis ATCC 23445]
 gi|225641067|gb|ACO00981.1| AAA ATPase central domain protein [Brucella melitensis ATCC 23457]
 gi|255999792|gb|ACU48191.1| ATPase, AAA family [Brucella microti CCM 4915]
 gi|260920952|gb|EEX87605.1| recombination factor protein RarA [Brucella ceti B1/94]
 gi|261297062|gb|EEY00559.1| recombination factor protein RarA [Brucella pinnipedialis B2/94]
 gi|261301273|gb|EEY04770.1| recombination factor protein RarA [Brucella neotomae 5K33]
 gi|261303099|gb|EEY06596.1| recombination factor protein RarA [Brucella pinnipedialis
           M163/99/10]
 gi|261738381|gb|EEY26377.1| ATPase [Brucella sp. F5/99]
 gi|261742267|gb|EEY30193.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513]
 gi|262552801|gb|EEZ08791.1| recombination factor protein RarA [Brucella ceti M490/95/1]
 gi|262766233|gb|EEZ12022.1| recombination factor protein RarA [Brucella melitensis bv. 3 str.
           Ether]
 gi|263093935|gb|EEZ17869.1| ATPase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661066|gb|EEZ31327.1| recombination factor protein RarA [Brucella pinnipedialis
           M292/94/1]
 gi|326538935|gb|ADZ87150.1| AAA ATPase central domain protein [Brucella melitensis M5-90]
          Length = 437

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 49  ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +        + +D +  A +++  +     A  L +++  
Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218

Query: 222 L 222
            
Sbjct: 219 A 219


>gi|124024855|ref|YP_001013971.1| fused recombination factor protein RarA/unknown domain-containing
           protein [Prochlorococcus marinus str. NATL1A]
 gi|123959923|gb|ABM74706.1| Hypothetical protein NATL1_01421 [Prochlorococcus marinus str.
           NATL1A]
          Length = 734

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 19/146 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +  + S      A       + +     ++ ++      T L
Sbjct: 57  LLLYGPPGVGKTTLARIIALNTLSHFSVVNAALAGIKDLRSEIESAIDRLNKFGKR-TIL 115

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDL-CSRLKAATVVKISLP 173
           F    H  N+          +  +  L+ A T    + V    L  SRL      +++  
Sbjct: 116 FIDEVHRFNTAQQDALLPWVENGTLTLIGATTENPYFEVNKALLSRSRL-----FRLNSL 170

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAA 199
           +   L +++ +   D++     KL  
Sbjct: 171 NSKALHQLLQRALNDKKRGYGLKLIN 196


>gi|16120141|ref|NP_395729.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|169237400|ref|YP_001690604.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|10584255|gb|AAG20864.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|167728627|emb|CAP15469.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 737

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 36/175 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P++ V+L GP G+GK+ LA   ++++ S   S                 + +       +
Sbjct: 499 PAKGVLLYGPPGTGKTLLAKAVANEANSNFISIKGPELFNKYVGESERGVREVFSKAREN 558

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               V  ++ID +                  +QL   ++ + + +  +++     P    
Sbjct: 559 APTVVFFDEIDAIASERGQGVGDSNVGERVVSQLLTELDGLEELEDIVVIATTNRPDLID 618

Query: 153 VCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
             L  L   RL     V +  PD+    ++      D+ +  D  +   +V+R +
Sbjct: 619 DAL--LRPGRLD--RHVAVDEPDEAARREIFEIHTEDKPLAEDVDV-DELVERTD 668


>gi|45357587|ref|NP_987144.1| ATPase [Methanococcus maripaludis S2]
 gi|45047147|emb|CAF29580.1| putative AAA superfamily ATPase, similar to FtsH [Methanococcus
           maripaludis S2]
          Length = 371

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 60/170 (35%), Gaps = 34/170 (20%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108
            W  + ++  GP G+GK+ LA   + ++                  + +K ++S+  +  
Sbjct: 153 EWAPKNILFYGPPGTGKTMLARALATETDVPLYLIKATELIGDHVGDGSKQIESLYENAS 212

Query: 109 K----PVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151
           +     + ++++D +  +                L   ++ I      + + A   P   
Sbjct: 213 ENTPSIIFIDELDAIALSRQFQSLRGDVSEVVNALLTELDGIKNNLGVVTIAATNNPEML 272

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
              +    SR +     K+  PDD+   K++        I ++  L  Y+
Sbjct: 273 DNAI---RSRFEEEIEFKM--PDDNERLKILELYAEKMPIAVNADLKKYV 317


>gi|333027616|ref|ZP_08455680.1| hypothetical protein STTU_5120 [Streptomyces sp. Tu6071]
 gi|332747468|gb|EGJ77909.1| hypothetical protein STTU_5120 [Streptomyces sp. Tu6071]
          Length = 222

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 31/180 (17%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSA---IEQAVRLIDSWPSWPSRVVIL 69
           PD  +  + +        +          D +V +A      A   + +        ++L
Sbjct: 32  PDLARRYEARIPPRYRGAALGHPAVRVWADQVVAAAERPNPGARAAVTT-----GPSLLL 86

Query: 70  VGPSGSGKSC-------------LANIWSDKSRSTRFSNIAKSLDSIL---------IDT 107
            GP+G GK+              LA  W   + +  ++ +     S           +  
Sbjct: 87  AGPTGVGKTHEAYGAVRALADAGLAVRWEATTAADLYAELRPQPGSDPERVLARVSRVPL 146

Query: 108 RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAAT 166
                L      ++ +   + +IN  + ++   L+T           L D + SRL   T
Sbjct: 147 LLLDDLGAARSSEWVEEITYRLINRRYNHELPTLITTNLPIRDLRATLGDRIASRLAEMT 206


>gi|327532765|ref|NP_001127417.1| 26S protease regulatory subunit 8 [Pongo abelii]
          Length = 398

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L   LI     ++ E
Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKLIGEGARMVRE 225


>gi|298493199|ref|YP_003723376.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298235117|gb|ADI66253.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 631

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 45/204 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 211 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 270

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 271 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 330

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD     +++     ++++     L   I +R       A
Sbjct: 331 ------LRPGRFDRQVTVDAPDIKGRLEILEVHSRNKKLDPSVSL-DAIARRTP-GFTGA 382

Query: 213 EKLVDKMDNLAL--SRGMGITRSL 234
             L + ++  A+  +R    T ++
Sbjct: 383 -DLANLLNEAAILTARRRKDTITI 405


>gi|261403117|ref|YP_003247341.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
 gi|261370110|gb|ACX72859.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7]
          Length = 401

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + V+L GP G+GK+ LA+  +    +T F+  A S+ S        ++
Sbjct: 153 PWKGVLLFGPPGTGKTLLASACAGSLDATFFNVKASSVTSKYFGESSKII 202


>gi|239948017|ref|ZP_04699770.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239948145|ref|ZP_04699898.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239948206|ref|ZP_04699959.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922293|gb|EER22317.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922421|gb|EER22445.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922482|gb|EER22506.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 200

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           +++ G  G+GKS     LA  W    R   ++  A  +  +L                  
Sbjct: 44  ILIFGNPGTGKSHLSIGLAREWCLAGRRVLYTTAANLVQQLLEAKLSLKLKQIIKKFDYF 103

Query: 111 --VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             ++++DI  + +N  +   LF ++   ++  SS+L+T+      W     D
Sbjct: 104 EILIIDDISYVPYNREETDVLFTLLPERYEM-SSVLITSNLVFAKWNTIFKD 154


>gi|225426100|ref|XP_002276971.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 829

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 551 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 582


>gi|255935967|ref|XP_002559010.1| Pc13g05760 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583630|emb|CAP91645.1| Pc13g05760 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 389

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 169 VLLYGPPGTGKTLLARAAAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 216


>gi|194761254|ref|XP_001962844.1| GF14225 [Drosophila ananassae]
 gi|190616541|gb|EDV32065.1| GF14225 [Drosophila ananassae]
          Length = 356

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
           T+R  P           SR      +++S P +  +  ++        + +  +LA  +V
Sbjct: 168 TSRIIPAI--------RSR---CLGIRVSAPSEPEIVSILQNTCKREGLTLPPELAKRLV 216

Query: 203 QRMERSLVFAEKLVDK 218
           ++ ER+L  A  +++ 
Sbjct: 217 EKSERNLRRALLMLEA 232


>gi|159029215|emb|CAO87575.1| ftsH [Microcystis aeruginosa PCC 7806]
          Length = 654

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G+GK+ LA   + ++  T FS  A     + + T    + +
Sbjct: 240 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRD 287


>gi|297619932|ref|YP_003708037.1| AAA ATPase central domain-containing protein [Methanococcus voltae
           A3]
 gi|297378909|gb|ADI37064.1| AAA ATPase central domain protein [Methanococcus voltae A3]
          Length = 373

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 34/151 (22%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108
            W  + ++  G  G+GK+ LA   + ++                  + +K +  +  D  
Sbjct: 152 EWSPKNILFYGSPGTGKTMLARALASQTNSNLKLIKATELIGEHVGDSSKVIKGLYADAA 211

Query: 109 K----PVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
                 + +++ID +  +                L   ++ IH+ +  + + A   P   
Sbjct: 212 ANKPCIIFIDEIDAIALSRNYQSLRGDVSEVVNALLTELDGIHENEGVITIAATNNPDML 271

Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
            + +    SR +   + KI  P++    +++
Sbjct: 272 DLAV---RSRFEEEILFKI--PNEKERLEIL 297


>gi|156545181|ref|XP_001603491.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 913

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            R+ +L GP G GK+ LA++ + +        +  S D      R+ +L
Sbjct: 327 QRIALLTGPPGLGKTTLAHV-AARHAGYNIVELNASDDRGPEAFREALL 374


>gi|147797283|emb|CAN73743.1| hypothetical protein VITISV_026769 [Vitis vinifera]
          Length = 825

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 545 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 576


>gi|145355574|ref|XP_001422034.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582273|gb|ABP00328.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 691

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GP G GK+ LA+  + +++   FS  A  + S +    +  + E       +
Sbjct: 95  PPRGVLLHGPPGCGKTTLAHAIAQEAKVPFFSIAATEIVSGMSGESEAKIRELFQSAAAH 154

Query: 123 DTQL 126
              L
Sbjct: 155 APSL 158


>gi|322815168|gb|EFZ23885.1| proteasome regulatory ATPase subunit, putative [Trypanosoma cruzi]
          Length = 404

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 183 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARLVRE 230


>gi|302797863|ref|XP_002980692.1| hypothetical protein SELMODRAFT_420183 [Selaginella moellendorffii]
 gi|300151698|gb|EFJ18343.1| hypothetical protein SELMODRAFT_420183 [Selaginella moellendorffii]
          Length = 1045

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P + V+L GP G+GK+ L    + +S +  F
Sbjct: 832 PCKGVLLYGPPGTGKTYLTKAVAAQSSANLF 862


>gi|300120926|emb|CBK21168.2| unnamed protein product [Blastocystis hominis]
          Length = 458

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +T    +   L    +     ++ E
Sbjct: 205 PPKGVLLYGPPGTGKTLSARAVANRTEATFIRVLGSELVQKYVGEGARIVRE 256


>gi|258511998|ref|YP_003185432.1| AAA ATPase central domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478724|gb|ACV59043.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 447

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 83/244 (34%), Gaps = 45/244 (18%)

Query: 8   YSFFVPDKQKNDQP---KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS 64
           +S     + + + P   + +   L         + RD +L         R+I+       
Sbjct: 4   FSLASEHEAEREAPLAYRMRPRSLDEMVGHENLVGRDGIL--------RRMIERDR---L 52

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---- 120
             +IL GP G+GK+ +A + + ++++      A +     +        E+ DL      
Sbjct: 53  MSIILYGPPGTGKTTIAEVIARQTKARFIPLNAVTSGIADVRKAVETAREERDLYARRTV 112

Query: 121 --FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
              ++    H  N           +     L+ A T    + V    L SR   + V ++
Sbjct: 113 VFLDEI---HRFNKSQQDALLPHVEAGLLSLVGATTENPYFDVNAA-LLSR---SHVFRL 165

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                D + +++    AD  R +      +    A  ++    R    A + ++ ++  A
Sbjct: 166 EPLSPDDIGRLVDMAIADEERGLGRMRVRLHPD-ARRVLTLQAR--GDARRALNLLELAA 222

Query: 224 LSRG 227
            +  
Sbjct: 223 FAAR 226


>gi|255538752|ref|XP_002510441.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
 gi|223551142|gb|EEF52628.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
          Length = 399

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 223


>gi|134102887|ref|YP_001108548.1| transposase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915510|emb|CAM05623.1| transposase [Saccharopolyspora erythraea NRRL 2338]
          Length = 244

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 47/152 (30%)

Query: 30  FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL- 80
           F F     + RD        D +                      V+ +GP G+GK+ L 
Sbjct: 62  FDFDHQRSLKRDTITHLGTLDFIAGKEN-----------------VVFLGPPGTGKTHLS 104

Query: 81  --ANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND 123
               I + ++        A    + L +                   ++++++  + F  
Sbjct: 105 IGLGIRACQAGHRVSFATAAGWVARLAEASHAGRLQQELVKLGRIPLLIIDEVGYIPFEA 164

Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                 F ++ S     +SL++T+      WG
Sbjct: 165 EAANLFFQLV-SARYERASLIVTSNKPFGRWG 195


>gi|6692099|gb|AAF24564.1|AC007764_6 F22C12.12 [Arabidopsis thaliana]
          Length = 825

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ ++  +
Sbjct: 527 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 558


>gi|71033181|ref|XP_766232.1| 26S proteasome regulatory subunit 7 [Theileria parva strain Muguga]
 gi|68353189|gb|EAN33949.1| 26S proteasome regulatory subunit 7, putative [Theileria parva]
          Length = 425

 Score = 39.4 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P   V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 200 PPNGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARLVRELFQMARSK 259

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                 ++++D +  +               +  I+N +  +D+     +LM        
Sbjct: 260 KACILFIDEVDAIGGSRGEDASNGDHEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319

Query: 148 ------P----VSWGVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 320 DSALLRPGRIDRRIEFGLPDLEGR 343


>gi|332884949|gb|EGK05204.1| hypothetical protein HMPREF9456_03117 [Dysgonomonas mossii DSM
           22836]
          Length = 422

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 38/179 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI-----------LIDTRKPV 111
              +L GP G GK+ LA I ++   +     S I   +  +             +T+ P+
Sbjct: 40  PSFLLWGPPGVGKTTLAQIIANTLDTPFYTLSAINSGVKDVREVIELAKKNQFFNTKSPI 99

Query: 112 L-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           L +++I     +    L        +     L+ A T   S+ V  P L SR     V  
Sbjct: 100 LFIDEIHRFSKSQQDSLL----GAVETGVITLIGATTENPSFEVIRP-LLSR---CQVYV 151

Query: 170 ISLPDDDFLEKVIVKM------FADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMD 220
           +     + LE++  +         DR I +     +  +       S   A KL++ +D
Sbjct: 152 LQSLGKEDLEELAHRALTQDIILKDRDIELKETDAILRF-------SGGDARKLLNILD 203


>gi|328684931|gb|AEB33878.1| transposase [Mycobacterium sp. JS330]
          Length = 266

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 47/152 (30%)

Query: 30  FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           F F    G+ RD        D +                      V+ +GP G+GK+ LA
Sbjct: 85  FDFDHARGLKRDLIAHLGTLDFVTAKDN-----------------VVFLGPPGTGKTHLA 127

Query: 82  ---NIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPVLLEDIDLLDFND 123
               I + ++        A                  +   +     ++++++  + F  
Sbjct: 128 IGIAIRACQAGHRVLFATASQWVDRLAGAHHGGTLQAELARLARYPLLVIDEVGYIPFEP 187

Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                 F ++ S     +SL++T+      WG
Sbjct: 188 EAANLFFQLV-SSRYERASLIVTSNKPFGRWG 218


>gi|291398411|ref|XP_002715511.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase
           5-like, partial [Oryctolagus cuniculus]
          Length = 334

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           S+ V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 111 SKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 161


>gi|260202801|ref|ZP_05770292.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis K85]
 gi|289572264|ref|ZP_06452491.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis K85]
 gi|289536695|gb|EFD41273.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis K85]
          Length = 760

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 82/268 (30%), Gaps = 62/268 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K++ +QL    P+         D          D L + +  QA+         P  V+ 
Sbjct: 147 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 200

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112
           L GP G+GK+ LA   + ++    F+        + +                     + 
Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIF 260

Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +++ID +               +  L  +   ++        +L+ A   P      L  
Sbjct: 261 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPAL-- 318

Query: 158 LCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
               L+       + +S PD      V+      + +  D  L   + +R    +  A  
Sbjct: 319 ----LRPGRFDRQIPVSNPDLAGRRAVLRAHSKGKPMAADADL-DGLAKRTV-GMTGA-D 371

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
           L + ++  AL         +    L+E 
Sbjct: 372 LANVINEAALLTARENGTVITGPALEEA 399


>gi|213409774|ref|XP_002175657.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
 gi|212003704|gb|EEB09364.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
          Length = 629

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + ++L GP G+GK+ LA   + ++++T FS  A SL S  +   + ++
Sbjct: 381 PVQGMLLFGPPGTGKTMLAKAVATEAKATFFSISASSLTSKYLGESEKLV 430


>gi|224062085|ref|XP_002300747.1| predicted protein [Populus trichocarpa]
 gi|118483383|gb|ABK93592.1| unknown [Populus trichocarpa]
 gi|222842473|gb|EEE80020.1| predicted protein [Populus trichocarpa]
          Length = 402

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 175 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 226


>gi|126730808|ref|ZP_01746617.1| hypothetical protein SSE37_13383 [Sagittula stellata E-37]
 gi|126708524|gb|EBA07581.1| hypothetical protein SSE37_13383 [Sagittula stellata E-37]
          Length = 208

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-RSTRFSNIAKSLDSILIDTRKP 110
           A R+ ++      R+V L G  GSGKS LA++ + ++  +         LD  L+     
Sbjct: 11  AERIAETPARGRRRLVALAGAPGSGKSTLAHVVAARTPNAAVMPMDGFHLDDRLLRPAGL 70

Query: 111 V 111
           +
Sbjct: 71  L 71


>gi|119962942|ref|YP_948025.1| recombination factor protein RarA [Arthrobacter aurescens TC1]
 gi|119949801|gb|ABM08712.1| putative ATPase, AAA family [Arthrobacter aurescens TC1]
          Length = 497

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 29/176 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           VIL GP G+GK+ LA++ +          S I   +  +     + +   D+       T
Sbjct: 80  VILWGPPGTGKTTLAHVIARGPGRKFVELSAITAGVKDVRRVMDEALTARDLYKKT---T 136

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +    +L+ A T   S+ V  P     L  + ++ +  
Sbjct: 137 VLFLDEIHRFNKAQQDALLPGVENRWVVLVAATTENPSFSVVSPL----LSRSLLLTLKP 192

Query: 173 PDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             DD +  ++ +   D R +     +  +   ++V+    S   A + +  ++  A
Sbjct: 193 LTDDDISGLLQRAVVDARGLAGRVELSPEALDHLVR---LSGGDARRALTALEAAA 245


>gi|55729400|emb|CAH91432.1| hypothetical protein [Pongo abelii]
          Length = 398

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L   LI     ++ E
Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKLIGEGARMVRE 225


>gi|9294440|dbj|BAB02560.1| unnamed protein product [Arabidopsis thaliana]
          Length = 270

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ LA   + ++ +   S    +L S
Sbjct: 15  PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 54


>gi|297818698|ref|XP_002877232.1| ATPDR10/PDR10 [Arabidopsis lyrata subsp. lyrata]
 gi|297323070|gb|EFH53491.1| ATPDR10/PDR10 [Arabidopsis lyrata subsp. lyrata]
          Length = 1387

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----ILIDTRKPVLLEDIDL 118
           P R+ +L+GP GSGKS L    S K+ +   S    + +       +  R    ++  D+
Sbjct: 171 PGRLTLLLGPPGSGKSTLLKALSGKTEAGLKSTGKVTYNGHELHEFVPERTAGYIDQYDV 230

Query: 119 LDFN 122
              +
Sbjct: 231 HLPD 234


>gi|290976655|ref|XP_002671055.1| predicted protein [Naegleria gruberi]
 gi|284084620|gb|EFC38311.1| predicted protein [Naegleria gruberi]
          Length = 883

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+ V+ L GP G GK+ LA   S+ S +   S
Sbjct: 586 PAGVL-LYGPPGCGKTLLAKAISNDSGANFIS 616



 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 36/141 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKS--------LDSILID 106
           P R ++L GP G GK+ LAN  + +        S     S ++              + +
Sbjct: 258 PPRGILLHGPPGCGKTMLANAIAGELQIPFLKVSAPEIVSGMSGESEAKIRQIFRDAISN 317

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
               + +++ID +           N+  + +  ++            CL DL        
Sbjct: 318 APSIIFIDEIDAILSKRD------NASKEMEKRIV-------AQLITCLDDLTLEKTGGK 364

Query: 167 VVKI-------SLPDDDFLEK 180
            V I          DD     
Sbjct: 365 TVIIIGATNRPDSLDDALRRA 385


>gi|300780995|ref|ZP_07090849.1| recombination protein A [Corynebacterium genitalium ATCC 33030]
 gi|300532702|gb|EFK53763.1| recombination protein A [Corynebacterium genitalium ATCC 33030]
          Length = 396

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVI-LVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDS 102
           + S    AV +      WP   ++ + GP  SGK+ +A +  ++  R+   +    +  +
Sbjct: 71  ISSGN-TAVDVALGIGGWPRGRIVEIYGPESSGKTTVALHAIAEAQRAGGIAAFIDAEHA 129

Query: 103 ILIDTRKPVLLE 114
           +  +  K + ++
Sbjct: 130 LDPEYAKKLGVD 141


>gi|289578211|ref|YP_003476838.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter italicus
           Ab9]
 gi|297544492|ref|YP_003676794.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289527924|gb|ADD02276.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter italicus
           Ab9]
 gi|296842267|gb|ADH60783.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 338

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 43/201 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA + S++           +++           L++ D+L  +
Sbjct: 51  PLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIERSGDLAAILTNLQENDILFID 110

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPD 174
           +    H +N   +    +L      P      L       P   S RL       I    
Sbjct: 111 EI---HRLNRSVEE---ILY-----PAMEDFELDIVIGKGPSARSIRLSLPRFTLIGA-- 157

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDK--------MDNLA-- 223
                 ++     DR   I          R++  S+   ++++ +        +D  A  
Sbjct: 158 -TTRAALMTSPLRDRFGVI---------NRLDYYSVDELKEIIKRSANILNIGIDEDAAL 207

Query: 224 -LSRGMGITRSLAAEVLKETQ 243
            +++    T  +A  +LK  +
Sbjct: 208 EIAKRSRGTPRIANRLLKRVR 228


>gi|300708081|ref|XP_002996228.1| hypothetical protein NCER_100711 [Nosema ceranae BRL01]
 gi|239605510|gb|EEQ82557.1| hypothetical protein NCER_100711 [Nosema ceranae BRL01]
          Length = 397

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 39/166 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112
           V+L GP G+GK+ LA   +          +A +L    I     ++              
Sbjct: 178 VLLYGPPGTGKTLLARATAATMDCNFLKVVASALIEKYIGESSRMIREMFAYAREKAPCV 237

Query: 113 --LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCL 155
             L++ID +                  L  ++N      + D+  ++ A   P      L
Sbjct: 238 IFLDEIDAIGGKRSSESSSSDREVQRTLMELLNQLDGFKELDNVKVIMATNRPDILDPAL 297

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
             L   RL     ++I LP+++   +++     D  + I  +   Y
Sbjct: 298 --LRPGRLD--RKIEIPLPNEEGRREILKIHSKD--MEISGE-IDY 336


>gi|258566938|ref|XP_002584213.1| cell division cycle protein 48 [Uncinocarpus reesii 1704]
 gi|237905659|gb|EEP80060.1| cell division cycle protein 48 [Uncinocarpus reesii 1704]
          Length = 806

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 245 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 304

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 305 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNS---V 361

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 362 DPALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 402


>gi|269118811|ref|YP_003306988.1| Holliday junction DNA helicase RuvB [Sebaldella termitidis ATCC
           33386]
 gi|268612689|gb|ACZ07057.1| Holliday junction DNA helicase RuvB [Sebaldella termitidis ATCC
           33386]
          Length = 339

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA + +++            L+           LE+ D+L  ++   
Sbjct: 57  ILLYGPPGLGKTTLAGVIANEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEI-- 114

Query: 127 FHIINSIHQY 136
            H +N+  + 
Sbjct: 115 -HRLNTSVEE 123


>gi|268317651|ref|YP_003291370.1| AAA ATPase central domain-containing protein [Rhodothermus marinus
           DSM 4252]
 gi|262335185|gb|ACY48982.1| AAA ATPase central domain protein [Rhodothermus marinus DSM 4252]
          Length = 584

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 43/180 (23%)

Query: 68  ILVGPSGSGKSCLANIWSDKSR--------------STRFSNIAKSLDSILIDTRKPVLL 113
           ++ GP G+GK+ L   ++ +                     N+ K L+ +   T   V++
Sbjct: 330 LVTGPVGTGKTFLITCFAGEIGIPMVRFKNFRSQWQGVTEGNLEKILNLLEAMTPVAVMI 389

Query: 114 EDIDLLDFNDTQ---------LFHIINSIHQYDSS------LLMTARTFPVSWGVCLPDL 158
           ++ D    +            +F  I S     +        L+TAR  P    V   DL
Sbjct: 390 DEADAALGHREAEGDSGVSKRVFAQIASFMSNPAHRGRILFFLLTAR--PDLMPV---DL 444

Query: 159 CSRLKAATVVKISLPD-----DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
             + +A   + +  PD     D+ L+ ++ +      I +       +++  ERS   AE
Sbjct: 445 KRQGRAEEHIALFYPDTREERDELLQVMLRR----TGIELSLDEVPDVLRNGERSFSGAE 500


>gi|224008308|ref|XP_002293113.1| 26S proteasome ATPase regulatory subunit [Thalassiosira pseudonana
           CCMP1335]
 gi|220971239|gb|EED89574.1| 26S proteasome ATPase regulatory subunit [Thalassiosira pseudonana
           CCMP1335]
          Length = 413

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 48/188 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112
           V+L GP G+GK+ LA   +    +T    +A ++    I     ++              
Sbjct: 194 VLLYGPPGTGKTLLARALASNISATFLKVVASAIVDKYIGESARIIREMFGFARDHQPCV 253

Query: 113 --LEDIDLLDFN------------DTQLFHIINSIH--QYDSSL-LMTARTFPVSWGVCL 155
             +++ID +  +               L  ++N +   +    + ++ A   P      L
Sbjct: 254 IFMDEIDAIGGSRFSEGTSADREIQRTLMELLNQMDGFEDQGQVKMVMATNRPDILDPAL 313

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L   RL     ++I  P++    +++    A             I +R +       K
Sbjct: 314 --LRPGRLD--RKIEIPEPNETQRLEILKIHSAS------------ITKRGDIDFESVVK 357

Query: 215 LVDKMDNL 222
           L D ++  
Sbjct: 358 LADGLNGA 365


>gi|294657430|ref|XP_459738.2| DEHA2E09922p [Debaryomyces hansenii CBS767]
 gi|199432686|emb|CAG87974.2| DEHA2E09922p [Debaryomyces hansenii]
          Length = 429

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+  ++L GP G+GKS LA   + +++ST FS  +  L
Sbjct: 158 PTSGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDL 195


>gi|149639275|ref|XP_001507929.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 476

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 251 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 310

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 311 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 370

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 371 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 411

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 412 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 446


>gi|145341796|ref|XP_001415989.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576212|gb|ABO94281.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 247

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 35/159 (22%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111
           +LVGP G+GK+ LA   + +S    F   A     + +                     +
Sbjct: 41  LLVGPPGTGKTLLARAVAGESGVAFFPVAASEFVELFVGRGAARVRELFAEARKARPAII 100

Query: 112 LLEDIDLL------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
            ++++D +        N+       QL   ++   +    L++ A   P +    L  L 
Sbjct: 101 FIDELDAVGSRRGAGLNEERDQTLNQLLVEMDGFAKDSGILILAATNRPDALDPAL--LR 158

Query: 160 -SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             RL     V +  P      +++      R + +++ +
Sbjct: 159 PGRL--TRRVFVGPPTQQGRAQILSVHL--RGLDLEEDV 193


>gi|81361350|gb|ABB71513.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361352|gb|ABB71514.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361354|gb|ABB71515.1| chromosomal replication initiator protein [Wolbachia pipientis]
          Length = 134

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           L    V  I+    +    ++        +++ K +  ++ + ++ ++   E  ++K+ +
Sbjct: 1   LGWGLVADINETTFELRLGILQAKVERMNMYVPKDVLEFLARNIKSNIRELEGALNKVAH 60

Query: 222 LALSRGMGITRSLAAEVL 239
            +L  G  +T   A+E L
Sbjct: 61  TSLI-GRSMTVESASETL 77


>gi|107102094|ref|ZP_01366012.1| hypothetical protein PaerPA_01003143 [Pseudomonas aeruginosa PACS2]
          Length = 425

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 18/177 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            IL GP G GK+ L  + +  + S   +  A       I         ++D    + T L
Sbjct: 38  FILWGPPGVGKTTLGRLAASATDSRFIAISAVLAGVKDIRQAIDEAQAELDNHGRS-TVL 96

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +     L+   T      V    L SR   A V  +    
Sbjct: 97  FVDEIHRFNKAQQDALLPHVESGLLTLVGGTTEHPGLAVNSA-LLSR---AQVYTLEPLS 152

Query: 175 DDFLEKVIVKMF-ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            D L ++  +     + + +D      +    +        L++++ N A   G  +
Sbjct: 153 SDELNQLYERALPHLQGVTLDADALDLLKGFADGDGRRFLNLLEQVTNAASGAGKTV 209


>gi|76801412|ref|YP_326420.1| proteasome-activating nucleotidase [Natronomonas pharaonis DSM
           2160]
 gi|76557277|emb|CAI48853.1| proteasome-activating nucleotidase 2 [Natronomonas pharaonis DSM
           2160]
          Length = 404

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ +T        L    I      L+ D+  L   
Sbjct: 181 PPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFI-GEGAKLVRDLFELARQ 239

Query: 123 D 123
           +
Sbjct: 240 E 240


>gi|159903447|ref|YP_001550791.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211]
 gi|159888623|gb|ABX08837.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211]
          Length = 577

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 46/156 (29%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +L+GP G+GK+ LA   + ++    FS  A     + +                     
Sbjct: 159 FLLIGPPGTGKTLLARAIAGEANVPFFSISASEFVELFVGVGASRVRQLFKKALEKSPSI 218

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +           ND       QL   I+   +    +++ A   P       
Sbjct: 219 IFIDEIDAIGRKRGSGIGGGNDEREQTLNQLLTEIDGFAENSGVIVIAATNRPDVLDNAL 278

Query: 152 ----------GVCLPDLCSRLK-AATVVKISLPDDD 176
                      + LPD   RL+  +   +     +D
Sbjct: 279 IRPGRFDRKIEIGLPDRKGRLEILSVHARTKPLSED 314


>gi|40882206|emb|CAF06032.1| probable 26S proteasome regulatory particle chain RPT5 [Neurospora
           crassa]
          Length = 462

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            GP G+GK+ LA   + ++ +T        L  + I     ++ +
Sbjct: 249 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRD 293


>gi|329848734|ref|ZP_08263762.1| metalloprotease [Asticcacaulis biprosthecum C19]
 gi|328843797|gb|EGF93366.1| metalloprotease [Asticcacaulis biprosthecum C19]
          Length = 627

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 195 ALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFDQAKKNAPCI 254

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++     +  +++ A   P      L
Sbjct: 255 IFIDEIDAVGRHRGAGHGGGNDEREQTLNQLLVEMDGFEAQEGIIIIAATNRPDVLDTAL 314

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD    E ++        + +D  +   ++ R       A
Sbjct: 315 ------LRPGRFDRQVTVPNPDLSGREAILRVHMKPVPLAVDVDVK--VIARGTPGFSGA 366

Query: 213 EKLVDKMDNLALSRGMGITRSLA 235
             L + ++  AL       R L 
Sbjct: 367 -DLANLVNEAALMAARK-DRKLV 387


>gi|326563109|gb|EGE13382.1| recombination factor protein RarA [Moraxella catarrhalis 12P80B1]
          Length = 412

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113
             +IL G +G GK+ LA + +D         S ++            D  L      V +
Sbjct: 39  PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98

Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++I   +      L        +     L+ A T   S+ V    L SR     V K+  
Sbjct: 99  DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225
             DD +  +IV+      +   K +    +   ++ S     + ++ ++ +A +
Sbjct: 151 LSDDEIYALIVRAIRQDTLLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAA 204


>gi|326560683|gb|EGE11051.1| recombination factor protein RarA [Moraxella catarrhalis 46P47B1]
          Length = 412

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113
             +IL G +G GK+ LA + +D         S ++            D  L      V +
Sbjct: 39  PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98

Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++I   +      L        +     L+ A T   S+ V    L SR     V K+  
Sbjct: 99  DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225
             DD +  +IV+      +   K +    +   ++ S     + ++ ++ +A +
Sbjct: 151 LSDDEIYALIVRAIRQDTLLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAA 204


>gi|296109169|ref|YP_003616118.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
 gi|295433983|gb|ADG13154.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME]
          Length = 397

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GK+ LA+  +    +T F+  A S+
Sbjct: 149 PWKGILLFGPPGTGKTLLASACAGSLDATFFNVKASSV 186


>gi|225405623|ref|ZP_03760812.1| hypothetical protein CLOSTASPAR_04844 [Clostridium asparagiforme
           DSM 15981]
 gi|225042855|gb|EEG53101.1| hypothetical protein CLOSTASPAR_04844 [Clostridium asparagiforme
           DSM 15981]
          Length = 613

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 210 ALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEMFVGMGAAKVRDLFKQATEKAPCI 269

Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++        +++ A   P S     
Sbjct: 270 VFIDEIDTIGKKRDGGGISGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDAAL 329

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 330 LRPGRFDRRIPVELPDLKGR 349


>gi|224075026|ref|XP_002304524.1| predicted protein [Populus trichocarpa]
 gi|222841956|gb|EEE79503.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ ++  +
Sbjct: 99  PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 130


>gi|218192811|gb|EEC75238.1| hypothetical protein OsI_11534 [Oryza sativa Indica Group]
          Length = 778

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 45/164 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108
           P + ++L GP G+GK+ LA   + ++ +              F    K + ++       
Sbjct: 510 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSISSKWFGEGEKFVKAVFSLASKI 569

Query: 109 --KPVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144
               + ++++D +            +  + N              +  L++ A       
Sbjct: 570 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 629

Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181
                R  P    V LPD  +R  + +  + K  L DD  LE V
Sbjct: 630 DEAVVRRLPRRLMVNLPDASNRRKILSVILAKEDLADDVDLEAV 673


>gi|189091796|ref|XP_001929731.1| hypothetical protein [Podospora anserina S mat+]
 gi|188219251|emb|CAP49231.1| unnamed protein product [Podospora anserina S mat+]
          Length = 830

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 582 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 631


>gi|118594713|ref|ZP_01552060.1| recombination protein [Methylophilales bacterium HTCC2181]
 gi|118440491|gb|EAV47118.1| recombination protein [Methylophilales bacterium HTCC2181]
          Length = 433

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 30/174 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ +A++ S+   +   S  A       I       +E    +  +  
Sbjct: 44  PSMILWGPPGVGKTSIAHVISNCIDAEFLSISAVLSGVKEIRE----AIEKAQFMKEHQQ 99

Query: 125 Q---LF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVV 168
           +   LF    H  N   Q D+ L      L+T   A T   S+ V    L SR     V 
Sbjct: 100 RNTILFVDEVHRFNKSQQ-DAFLPHIESGLITFIGATTENPSFEVNSA-LLSR---CQVY 154

Query: 169 KISLPDDDFLEKVI---VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            +   ++  LE ++   +K++ +R   I++     +V   +        LV+ +
Sbjct: 155 VLKALNEKELESILDKALKLYPER--SINEGARNLVVTYADGDARKLINLVEML 206


>gi|19263883|gb|AAH25134.1| Psmc6 protein [Mus musculus]
          Length = 293

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 70  PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 121

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 122 ------MFNYARDHQ 130


>gi|78212852|ref|YP_381631.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
 gi|78197311|gb|ABB35076.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
          Length = 598

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 68/213 (31%), Gaps = 59/213 (27%)

Query: 18  NDQPKNKEEQ-LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS------RVVILV 70
             QP+ K +Q L   F    GI+   L     +E+ V  +    ++        R V+LV
Sbjct: 136 RSQPRLKPQQDLQLRFEDVAGINDARL----ELEEVVTFLKQPEAFIRLGAKIPRGVLLV 191

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VLLE 114
           GP G+GK+ LA   + ++    FS  A     + +                     V ++
Sbjct: 192 GPPGTGKTLLAKAIAGEAGVPFFSIAASEFVELFVGVGASRVRDLFRQAKEKSPCIVFID 251

Query: 115 DIDLLDF----------NDTQ--------------------LFHIINSIHQYDSSLLMTA 144
           +ID +            ++ +                    L    N     D++LL   
Sbjct: 252 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEENSGVILLAATNRADVLDAALLRPG 311

Query: 145 RTFPVSWGVCLPDLCSRLK-AATVVKISLPDDD 176
           R       V LPD   R    A   +    DD 
Sbjct: 312 RFD-RRIDVGLPDRRGREAILAVHARTRPLDDA 343


>gi|15966502|ref|NP_386855.1| Holliday junction DNA helicase B [Sinorhizobium meliloti 1021]
 gi|307300461|ref|ZP_07580241.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti BL225C]
 gi|307318326|ref|ZP_07597761.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti AK83]
 gi|20140125|sp|Q92M92|RUVB_RHIME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|15075773|emb|CAC47328.1| Probable holliday junction DNA helicase [Sinorhizobium meliloti
           1021]
 gi|306896008|gb|EFN26759.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti AK83]
 gi|306904627|gb|EFN35211.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti BL225C]
          Length = 346

 Score = 39.4 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 90/264 (34%), Gaps = 43/264 (16%)

Query: 4   MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDD---LLVHSAIEQAVRLIDSWP 60
           M E      P+K+  D       Q           +R +    +  +        +D   
Sbjct: 1   MSEAARLIAPEKRGEDLDATMRPQ-TLDEFTGQAEARANLKIFIEAARNRG--EALDH-- 55

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
                 V+ VGP G GK+ LA I + +      S     +            LE+ D+L 
Sbjct: 56  ------VLFVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLF 109

Query: 121 FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAA 165
            ++    H +N   +        D  L +     P +  V + DL         +RL   
Sbjct: 110 IDEI---HRLNPAVEEILYPAMEDFQLDLIIGEGPAARSVKI-DLAKFTLVAATTRLGLL 165

Query: 166 TV---------VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
           T          V+++    + LE ++ +      + +  + A  I +R   +   A +L+
Sbjct: 166 TTPLRDRFGIPVRLNFYTVEELELIVRRGARLMGLGMTDEGAREIARRARGTPRIAGRLL 225

Query: 217 DKM-DNLALSRGMGITRSLAAEVL 239
            ++ D   ++R   +T  +A E L
Sbjct: 226 RRVRDFAEVARAEAVTLKIADEAL 249


>gi|332188786|ref|ZP_08390497.1| AAA ATPase, CDC48 subfamily protein [Sphingomonas sp. S17]
 gi|332011185|gb|EGI53279.1| AAA ATPase, CDC48 subfamily protein [Sphingomonas sp. S17]
          Length = 763

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 70/197 (35%), Gaps = 36/197 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + V+L GP G+GK+ LA   +++S +              +    + L  I  +  K 
Sbjct: 236 PPKGVLLHGPPGTGKTRLARAVANESDAQFFLINGPEIMGSAYGESEQRLREIFEEATKS 295

Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V +++ID +                 QL  +++ +    + +++ A   P +    
Sbjct: 296 APSIVFIDEIDSIAPKRDRVQGEAEKRLVAQLLTLMDGLEARANLVIIAATNRPEAIDEA 355

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L     R     VV +  PD+    +++      R + +  K+    + R   +  F   
Sbjct: 356 LRR-PGRFDREIVVGV--PDERGRREIL--GIHTRGMPLGDKVDLAELART--TFGFVGA 408

Query: 215 LVDKMDN-LALSRGMGI 230
            +  +    A+     I
Sbjct: 409 DLAALTREAAIEAVRRI 425



 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P++  +L GP G+GK+ LA   + ++ +   +  +  L
Sbjct: 509 PAKGFLLYGPPGTGKTLLAKAVAREAEANFIATKSSDL 546


>gi|326573491|gb|EGE23457.1| recombination factor protein RarA [Moraxella catarrhalis O35E]
          Length = 412

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113
             +IL G +G GK+ LA + +D         S ++            D  L      V +
Sbjct: 39  PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98

Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++I   +      L        +     L+ A T   S+ V    L SR     V K+  
Sbjct: 99  DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225
             DD +  +IV+      +   K +    +   ++ S     + ++ ++ +A +
Sbjct: 151 LSDDEIYALIVRAIRQDTLLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAA 204


>gi|325187094|emb|CCA21636.1| 26S proteasome AAAATPase subunit RPT2a putative [Albugo laibachii
           Nc14]
          Length = 442

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 220 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 271


>gi|258626330|ref|ZP_05721177.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581382|gb|EEW06284.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 449

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111

Query: 127 F----HIINSIHQY 136
           F    H  N   Q 
Sbjct: 112 FVDEVHRFNKSQQD 125


>gi|255718169|ref|XP_002555365.1| KLTH0G07524p [Lachancea thermotolerans]
 gi|238936749|emb|CAR24928.1| KLTH0G07524p [Lachancea thermotolerans]
          Length = 445

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 220 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 271


>gi|226286751|gb|EEH42264.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 928

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 321 KVLVLTGPPGLGKTTLAHVCARQAG 345


>gi|295674171|ref|XP_002797631.1| chromosome transmission fidelity protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226280281|gb|EEH35847.1| chromosome transmission fidelity protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 983

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 326 KVLVLTGPPGLGKTTLAHVCARQAG 350


>gi|225426102|ref|XP_002276951.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 797

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 519 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 550


>gi|297742262|emb|CBI34411.3| unnamed protein product [Vitis vinifera]
          Length = 836

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 589


>gi|91200430|emb|CAJ73477.1| hypothetical protein kuste2727 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 395

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
               V L+GP  SGK+ LA     +S ST + ++ +  + + +D + P L++   L+  +
Sbjct: 29  SYPAVALIGPRQSGKTTLA-----RSLSTDYFDLEQEPEQLRLDVQWPSLIKTKRLIVLD 83

Query: 123 DTQ----LF----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK---AATVVKIS 171
           + Q    LF      I+   Q     L+     P         L  RL       +    
Sbjct: 84  EAQSWPELFPRLRGAIDMERQRLGRFLLLGSVSPALMKHVSESLAGRLSLVELTPLTLTE 143

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
           LPD    E  +   F D  +    +   +
Sbjct: 144 LPDIPMTELWLRGGFPDGGVLTSDRYPQW 172


>gi|60735079|dbj|BAD91025.1| valosin containing protein-2 [Eisenia fetida]
 gi|147225258|dbj|BAF62456.1| valosine containing peptide-2 [Eisenia fetida]
          Length = 763

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS+ V+  GP G GK+ LA   + + ++   S
Sbjct: 503 PSKGVLFYGPPGCGKTLLAKAIATQCQANFIS 534


>gi|27803008|emb|CAD60711.1| unnamed protein product [Podospora anserina]
          Length = 820

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S  +   + ++
Sbjct: 572 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 621


>gi|9367755|emb|CAB97492.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis]
          Length = 247

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R  IL GPSG+GKS LA   ++++ +         L          ++ E       N
Sbjct: 26  PPRSCILHGPSGTGKSLLARACANETSACYMKMAGSELIQXYSGEGPRLVRELFKAAKAN 85

Query: 123 DTQL 126
              +
Sbjct: 86  QPTI 89


>gi|86608120|ref|YP_476882.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123738037|sp|Q2JNP0|FTSH_SYNJB RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|86556662|gb|ABD01619.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 638

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 46/203 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS        + +                   
Sbjct: 203 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKQNAP 262

Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
             V +++ID +           ND       QL   ++        +++ A   P     
Sbjct: 263 CIVFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDA 322

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209
            L      L+       V +  PD     +++      R   +   +    + +R     
Sbjct: 323 AL------LRPGRFDRQVTVDRPDFQGRLEILKVHA--RGKTLSADVDLEKLARRTP-GF 373

Query: 210 VFAEKLVDKMDNLA-LSRGMGIT 231
             A  L + ++  A L+    +T
Sbjct: 374 TGA-DLANLLNEAAILAARRNLT 395


>gi|332982883|ref|YP_004464324.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
 gi|332700561|gb|AEE97502.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
          Length = 595

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 59/166 (35%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R VIL GP G+GK+ LA   + ++    ++        + +                   
Sbjct: 189 RGVILYGPPGTGKTLLARALAGEAGVPFYAVSGSDFVQMYVGVGAARIRSLFKKAREQGK 248

Query: 111 --VLLEDIDLLDF-----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
             + +++ID L             ++       L   ++  ++    ++M A        
Sbjct: 249 CVIFIDEIDALGKKRNGGRMDGGSDERDQTLNALLAEMSGFNENQGIVIMAATN------ 302

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID-KKL 197
                   RL            D   E ++     DRQI +    +
Sbjct: 303 --------RL------------DVLDEALLRPGRFDRQIEVGLPDV 328


>gi|296132700|ref|YP_003639947.1| Holliday junction DNA helicase RuvB [Thermincola sp. JR]
 gi|296031278|gb|ADG82046.1| Holliday junction DNA helicase RuvB [Thermincola potens JR]
          Length = 342

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 41/185 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I +++           +++           L   D+L  ++   
Sbjct: 56  VLLFGPPGLGKTTLAHIIANEMGVNIRITSGPAIERPGDLAAILTNLGQGDILFIDEI-- 113

Query: 127 FHIINSIHQ-------YDSSL-LMTARTFPVS-WGVCLPD------------LCS--RLK 163
            H +N   +        D +L ++  +        + LP             L S  R +
Sbjct: 114 -HRLNRSVEEVLYPAMEDYALDIIIGKGPSARSLRIDLPKFTLIGATTRAGMLTSPLRDR 172

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209
              ++++     + L +++ +  A  Q+ ID +              +A  +++R+ R  
Sbjct: 173 FGVILRLEFYTAEELMEIVRRAAAILQVTIDDEGAYEIARRSRGTPRVANRLLKRV-RDF 231

Query: 210 VFAEK 214
              + 
Sbjct: 232 AQVKA 236


>gi|293400875|ref|ZP_06645020.1| putative primosome component (helicase loader) [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305901|gb|EFE47145.1| putative primosome component (helicase loader) [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 305

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 11/73 (15%)

Query: 63  PSRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE---- 114
            S+ + L G  G+GKS LA    N ++ K RS  F N+ K +  + +  ++P+ +E    
Sbjct: 154 SSKGLYLWGKPGAGKSYLAAGMCNYFAKKKRSVSFVNVPKLISDLKMMFQEPLAMEAKLA 213

Query: 115 ---DIDLLDFNDT 124
               +D+L  +D 
Sbjct: 214 SIRHVDVLVLDDI 226


>gi|258645671|ref|ZP_05733140.1| ATP-dependent protease HslVU, ATPase subunit [Dialister invisus
          DSM 15470]
 gi|260403038|gb|EEW96585.1| ATP-dependent protease HslVU, ATPase subunit [Dialister invisus
          DSM 15470]
          Length = 453

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 33 PRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV----------VILVGPSGSGKSC 79
          PR +    D+ +V         AV L + W S               ++L+GP+G GK+ 
Sbjct: 6  PRRIVEYLDEYIVGQQNAKRSVAVALRNRWRSSRLPKEIAREVSPKNILLIGPTGVGKTE 65

Query: 80 LANIWSDKSRS 90
          +A   +  + +
Sbjct: 66 IARRIAALTGA 76


>gi|260578312|ref|ZP_05846228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603614|gb|EEW16875.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Corynebacterium jeikeium ATCC 43734]
          Length = 424

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           V  +   A R  D      S +++L GP+GSGK+ LA   +      R  ++  ++    
Sbjct: 96  VEESNATARRSDDEVELAKSNILML-GPTGSGKTYLAQSLA------RMLDVPFAIADAT 148

Query: 105 IDTRKPVLLEDIDLL 119
             T    + ED++ +
Sbjct: 149 SLTEAGYVGEDVENI 163


>gi|255727949|ref|XP_002548900.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
 gi|240133216|gb|EER32772.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
          Length = 825

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+ V++  GP G GK+ LA   +++SR+   S
Sbjct: 556 PAGVLM-WGPPGCGKTLLAKAVANESRANFIS 586



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R V+L GP G GK+ LAN  + +
Sbjct: 226 PPRGVLLYGPPGCGKTTLANALAGE 250


>gi|255552465|ref|XP_002517276.1| calmodulin-binding protein, putative [Ricinus communis]
 gi|223543539|gb|EEF45069.1| calmodulin-binding protein, putative [Ricinus communis]
          Length = 1094

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 63/170 (37%), Gaps = 35/170 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
           P++ V+L GP+G+GK+ LA + +  +     S                 + +   S    
Sbjct: 451 PTKGVLLHGPTGTGKTSLARLCALDAGVNLLSVNGPEIISQYHGESEQALHEVFASASRG 510

Query: 107 TRKPVLLEDIDLLD-----FND-------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               V ++++D +        +         L ++++ + + D  +++ A   P S    
Sbjct: 511 APAVVFIDELDSIAPARKDGGEALSQRMVATLLNLMDGVSRTDGVIIIAATNRPDSIE-- 568

Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
            P L    RL     ++I +P       ++  + + R+  +      ++ 
Sbjct: 569 -PALRRPGRLD--REIEIGVPSPKQRLDILNTLLSQREHSLSDLQVQHLA 615


>gi|194751155|ref|XP_001957892.1| GF10639 [Drosophila ananassae]
 gi|190625174|gb|EDV40698.1| GF10639 [Drosophila ananassae]
          Length = 972

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 724 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 772



 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P+R ++L GP G GK+ LA   S +
Sbjct: 292 PARGLLLHGPPGCGKTFLARAISGQ 316


>gi|170077793|ref|YP_001734431.1| cell division protein [Synechococcus sp. PCC 7002]
 gi|169885462|gb|ACA99175.1| cell division protein [Synechococcus sp. PCC 7002]
          Length = 637

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 45/201 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R ++L+GP G+GK+ LA   + ++    FS        + +                   
Sbjct: 214 RGMLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFRKAQENAP 273

Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
             V +++ID +           ND       QL   ++        +++ A   P     
Sbjct: 274 CLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDQ 333

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD      ++     D+++  D  L   I +R      
Sbjct: 334 AL------LRPGRFDRQVTVDYPDRLGRLAILEVHAQDKKVAEDVDL-EAIARRTP-GFS 385

Query: 211 FAEKLVDKMDNLAL--SRGMG 229
            A  L + ++  A+  +R   
Sbjct: 386 GA-DLANLLNEAAIFTARRRK 405


>gi|146413066|ref|XP_001482504.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 445

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 220 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 271


>gi|115468870|ref|NP_001058034.1| Os06g0607800 [Oryza sativa Japonica Group]
 gi|51090352|dbj|BAD35613.1| putative 26S proteasome regulatory particle triple-A ATPase
           subunit4 [Oryza sativa Japonica Group]
 gi|51091388|dbj|BAD36121.1| putative 26S proteasome regulatory particle triple-A ATPase
           subunit4 [Oryza sativa Japonica Group]
 gi|113596074|dbj|BAF19948.1| Os06g0607800 [Oryza sativa Japonica Group]
 gi|125597814|gb|EAZ37594.1| hypothetical protein OsJ_21925 [Oryza sativa Japonica Group]
 gi|215693190|dbj|BAG88572.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215694896|dbj|BAG90087.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 401

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++          
Sbjct: 174 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYAREH 233

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID +                  L  ++N      +     ++ A   P   
Sbjct: 234 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 293

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L   RL     ++I LP++    +V+    A             I +  E    
Sbjct: 294 DPAL--LRPGRLD--RKIEIPLPNEQSRMEVLKIHAAG------------IAKHGEIDYE 337

Query: 211 FAEKLVDKMDNLALSR 226
              KL +  +   L  
Sbjct: 338 AVVKLAEGFNGADLRN 353


>gi|12852148|dbj|BAB29293.1| unnamed protein product [Mus musculus]
          Length = 389

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N +  + 
Sbjct: 218 ------MFNYVRDHQ 226


>gi|68171607|ref|ZP_00544977.1| Holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88657636|ref|YP_507140.1| Holliday junction DNA helicase B [Ehrlichia chaffeensis str.
           Arkansas]
 gi|123763771|sp|Q2GHE3|RUVB_EHRCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|67998974|gb|EAM85655.1| Holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599093|gb|ABD44562.1| holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 329

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSIL--IDTRKPVLLE 114
           P   V+L GP G GK+ LA+I +       +S +    + A  L +IL  +  +  + ++
Sbjct: 50  PMDHVLLYGPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFID 109

Query: 115 DIDLLDFNDTQLF 127
           +I  L+ N  ++ 
Sbjct: 110 EIHRLNRNIEEIL 122


>gi|67540186|ref|XP_663867.1| hypothetical protein AN6263.2 [Aspergillus nidulans FGSC A4]
 gi|40739457|gb|EAA58647.1| hypothetical protein AN6263.2 [Aspergillus nidulans FGSC A4]
 gi|259479525|tpe|CBF69827.1| TPA: mitochondrial AAA ATPase, putative (AFU_orthologue;
           AFUA_2G12920) [Aspergillus nidulans FGSC A4]
          Length = 956

 Score = 39.4 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 685 PGLLLYGPPGTGKTLLAKAVARESGATVLE 714


>gi|323498307|ref|ZP_08103309.1| recombination factor protein RarA [Vibrio sinaloensis DSM 21326]
 gi|323316735|gb|EGA69744.1| recombination factor protein RarA [Vibrio sinaloensis DSM 21326]
          Length = 448

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 55/173 (31%), Gaps = 40/173 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+        T L
Sbjct: 54  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KRAGRRTIL 111

Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q        D ++     T              L SR   A V K++ 
Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVD-KMDNLA 223
                + + + +   D                 ER L   +   VD  +D LA
Sbjct: 166 LSQADILQALEQAIQDS----------------ERGLGAIKAQFVDNALDRLA 202


>gi|322703225|gb|EFY94837.1| ATPase family AAA domain-containing protein 1-A [Metarhizium
           anisopliae ARSEF 23]
          Length = 920

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            +  GP G+GK+ L    +  S ++  +  + ++ S  +   + ++
Sbjct: 587 ALFYGPPGTGKTHLCRAIAKASGASMLAIDSAAVHSKYVSETERLI 632


>gi|295107692|emb|CBL05235.1| phage DNA replication protein (predicted replicative helicase
           loader) [Gordonibacter pamelaeae 7-10-1-b]
          Length = 264

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 33/136 (24%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106
           +A R +  + S   + + +VG  G+GK+     LA  + +   + R +     LDS+   
Sbjct: 103 EAARYVVGFGSAGDKGLYIVGGVGTGKTYEACALAKSFIEAGYTVRVTTSLAMLDSVSRS 162

Query: 107 TRKP-------------VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVS 150
              P             ++++D+   +   +  T LF IINS ++     + T++     
Sbjct: 163 YDDPSIAGISIFTGVDVLVIDDLGKENANAWALTTLFQIINSRYEDGKPTIYTSQY---- 218

Query: 151 WGVCLPDLCS---RLK 163
                 DL S   R+ 
Sbjct: 219 ------DLQSLQRRMS 228


>gi|260654226|ref|ZP_05859716.1| protein RecA [Jonquetella anthropi E3_33 E1]
 gi|260630859|gb|EEX49053.1| protein RecA [Jonquetella anthropi E3_33 E1]
          Length = 373

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 13/114 (11%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---- 119
            R+V + GP G+GK+ LA     +++++         +  L       L  D++ L    
Sbjct: 63  GRIVEIFGPEGTGKTTLALHAIAETQASGGIAAFIDAEHALDPRLAAALGVDVESLYLAQ 122

Query: 120 -DFNDTQLFHIINSIHQYDSSLL----MTARTFPVSWGVCLPD----LCSRLKA 164
            D  +  L+ +   +      ++    + A T        + D    L +RL +
Sbjct: 123 PDSGEQALYILETLVRSSAVDMVVVDSVAALTPQAEIDGQIGDPSVGLQARLMS 176


>gi|257866969|ref|ZP_05646622.1| AAA ATPase [Enterococcus casseliflavus EC30]
 gi|257873303|ref|ZP_05652956.1| AAA ATPase [Enterococcus casseliflavus EC10]
 gi|257801025|gb|EEV29955.1| AAA ATPase [Enterococcus casseliflavus EC30]
 gi|257807467|gb|EEV36289.1| AAA ATPase [Enterococcus casseliflavus EC10]
          Length = 425

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +R + R  N A           +   +     +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTRYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +++ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGKIIMIGATTENPYITIN-PAIRSR---TQIFEVKPLQE 152

Query: 176 DFLEKVIVKMFAD--RQI 191
           + +   I +  AD  R +
Sbjct: 153 EDILTAIDQALADETRGL 170


>gi|294932527|ref|XP_002780317.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus
           ATCC 50983]
 gi|239890239|gb|EER12112.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus
           ATCC 50983]
          Length = 398

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +    ++    +A ++    I     V+ E
Sbjct: 179 VLLYGPPGTGKTLLARAMAHNMTASFIKVVASAIVDKYIGESARVIRE 226


>gi|294891603|ref|XP_002773646.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus
           ATCC 50983]
 gi|239878850|gb|EER05462.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus
           ATCC 50983]
          Length = 394

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +    ++    +A ++    I     V+ E
Sbjct: 175 VLLYGPPGTGKTLLARAMAHNMTASFIKVVASAIVDKYIGESARVIRE 222


>gi|260946513|ref|XP_002617554.1| hypothetical protein CLUG_02998 [Clavispora lusitaniae ATCC 42720]
 gi|238849408|gb|EEQ38872.1| hypothetical protein CLUG_02998 [Clavispora lusitaniae ATCC 42720]
          Length = 457

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 60/148 (40%), Gaps = 24/148 (16%)

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD-SSLLMTA 144
           DK R+     +AK +D  + +    VL   ID ++  D ++F  +N   +   + +++ A
Sbjct: 275 DKLRAEVNKVVAKYIDQGVAELIPGVLF--IDEVNMLDIEIFTYLNRALESSMAPVVVLA 332

Query: 145 RTF--------------PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
                            P       PDL  RL    +VK    +++ ++ +I K      
Sbjct: 333 SNRGMTTIRGTEDATKYPHGCP---PDLIDRL---LIVKTLPYNEEEIKVIISKRATLEN 386

Query: 191 IFIDKKLAAYIVQR-MERSLVFAEKLVD 217
           + +     + + Q  ++ SL +A +L+ 
Sbjct: 387 LNVSGDALSKLAQHGVQSSLRYALQLLA 414


>gi|257790542|ref|YP_003181148.1| IstB domain-containing protein ATP-binding protein [Eggerthella
           lenta DSM 2243]
 gi|257474439|gb|ACV54759.1| IstB domain protein ATP-binding protein [Eggerthella lenta DSM
           2243]
          Length = 264

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 33/136 (24%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106
           +A R +  + S   + + +VG  G+GK+     LA  + +   + R +     LDS+   
Sbjct: 103 EAARYVVGFGSAGDKGLYIVGGVGTGKTYEACALAKSFIEAGYTVRVTTSLAMLDSVSRS 162

Query: 107 TRKP-------------VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVS 150
              P             ++++D+   +   +  T LF IINS ++     + T++     
Sbjct: 163 YDDPSIAGISIFTGVDVLVIDDLGKENANAWALTTLFQIINSRYEDGKPTIYTSQY---- 218

Query: 151 WGVCLPDLCS---RLK 163
                 DL S   R+ 
Sbjct: 219 ------DLQSLQRRMS 228


>gi|224107112|ref|XP_002333569.1| predicted protein [Populus trichocarpa]
 gi|222837200|gb|EEE75579.1| predicted protein [Populus trichocarpa]
          Length = 211

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
          P + V+L GP G+GK+ LA     +S +   +
Sbjct: 44 PQKGVLLYGPPGTGKTMLAKAIVRESGAVFIN 75


>gi|221215299|ref|ZP_03588264.1| IstB domain protein ATP-binding protein [Burkholderia multivorans
           CGD1]
 gi|221164731|gb|EED97212.1| IstB domain protein ATP-binding protein [Burkholderia multivorans
           CGD1]
          Length = 261

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSILIDTRK---------PVLLED 115
           V+LVG  G+GK+ LA     +  +R         ++D +    ++            L+ 
Sbjct: 100 VVLVGGPGTGKTHLATAIGVAGITRHGSRVRFYSTVDLVNALEQEKAQGKAGRIAATLQR 159

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +DL+  ++             LFH+++ ++++ +S+++T       W 
Sbjct: 160 MDLVILDELGYLPFSQAGGALLFHLLSKLYEH-TSVMITTNLDFKEWS 206


>gi|218295295|ref|ZP_03496131.1| peptidase M41 FtsH extracellular [Thermus aquaticus Y51MC23]
 gi|218244498|gb|EED11023.1| peptidase M41 FtsH extracellular [Thermus aquaticus Y51MC23]
          Length = 283

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G GK+ +A   + ++R    +        + +      + +
Sbjct: 192 VLLVGPPGVGKTHIARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 239


>gi|220922586|ref|YP_002497888.1| putative deoxyribonuclease [Methylobacterium nodulans ORS 2060]
 gi|219947193|gb|ACL57585.1| putative deoxyribonuclease [Methylobacterium nodulans ORS 2060]
          Length = 373

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 52  AVRLIDSWPSWPSRVVI--LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           A+  I +W   P R  I  L G +G+GK+ LA   + + R T          ++++ ++ 
Sbjct: 10  ALHEIAAWRRAPGRKQIFRLFGFAGTGKTTLARAAAAEVRGTVLFAAFTGKAALVLRSKG 69

Query: 110 P 110
            
Sbjct: 70  C 70


>gi|126466168|ref|YP_001041277.1| ATPase central domain-containing protein [Staphylothermus marinus
           F1]
 gi|126014991|gb|ABN70369.1| AAA ATPase, central domain protein [Staphylothermus marinus F1]
          Length = 379

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
            WP  ++ L GP G GK+ +A   +++  +T  +    ++
Sbjct: 135 GWPKGIL-LFGPPGCGKTLIAYALANEINATLINVSPATI 173


>gi|72386993|ref|XP_843921.1| katanin [Trypanosoma brucei TREU927]
 gi|62176401|gb|AAX70510.1| katanin, putative [Trypanosoma brucei]
 gi|70800453|gb|AAZ10362.1| katanin, putative [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|261327030|emb|CBH10005.1| katanin, putative [Trypanosoma brucei gambiense DAL972]
          Length = 444

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + ++  T  S  +  L
Sbjct: 161 PWKGILLYGPPGTGKSYLAKAVATEADGTFLSVSSADL 198


>gi|148234030|ref|NP_001080548.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Xenopus
           laevis]
 gi|32484378|gb|AAH54287.1| Pros26.4-prov protein [Xenopus laevis]
          Length = 440

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGLELIQKYLGDGPKLVRE 269


>gi|73670349|ref|YP_306364.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro]
 gi|72397511|gb|AAZ71784.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro]
          Length = 764

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           V+L GP G+GK+ LA   + +S +   +     L
Sbjct: 526 VLLYGPPGTGKTLLAKAIAHESEANFITAKGSDL 559


>gi|66805379|ref|XP_636422.1| 26S protease regulatory subunit 6B [Dictyostelium discoideum AX4]
 gi|464860|sp|P34123|PRS6B_DICDI RecName: Full=26S protease regulatory subunit 6B homolog; AltName:
           Full=Tat-binding protein homolog 2
 gi|290055|gb|AAA33253.1| HIV1 TAT-binding protein [Dictyostelium discoideum]
 gi|60464797|gb|EAL62917.1| 26S protease regulatory subunit 6B [Dictyostelium discoideum AX4]
          Length = 403

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   +  + +     +        +    P L+ D+  L 
Sbjct: 183 PPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYL-GEGPRLVRDVFRLA 239


>gi|312877190|ref|ZP_07737159.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795999|gb|EFR12359.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 338

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 81/210 (38%), Gaps = 37/210 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LANI +++       +I  +    +      V +    L +  
Sbjct: 50  PLDHVLLYGPPGLGKTTLANIIANEMG----VDIKVTSGPAIERAGDLVAI----LTNIG 101

Query: 123 DTQ-LF----HIINS--------IHQYDSSLLMTARTFPV-SWGVCLPD----------- 157
           +   LF    H +N           +     +M  +     +  + LP            
Sbjct: 102 ENNILFIDEIHRLNRTIEEVLYPAMEDKKVDIMIGKGPSAKTIRLTLPPFTLIGATTRAG 161

Query: 158 -LCS--RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            L S  R +   + ++     + L +++++  +  +  I+K+    I +R   +   A +
Sbjct: 162 LLSSPLRDRFGIIERLDYYTVEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANR 221

Query: 215 LVDKMDNLALSRGMG-ITRSLAAEVLKETQ 243
           L+ ++ + A+ +  G IT  +A   L+  +
Sbjct: 222 LLRRLRDYAMVKHTGSITYEVAKSGLEMFE 251


>gi|302388828|ref|YP_003824649.1| hypothetical protein Toce_0240 [Thermosediminibacter oceani DSM
          16646]
 gi|302199456|gb|ADL07026.1| conserved hypothetical protein [Thermosediminibacter oceani DSM
          16646]
          Length = 274

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98
          +V+ LVG SG+GKS  A+I +    +    +   
Sbjct: 2  KVIALVGKSGTGKSHKAHIVARHYGAELIIDDGL 35


>gi|291523951|emb|CBK89538.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale DSM 17629]
          Length = 703

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 45/141 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 239 ALLVGPPGTGKTLLAKAVAGEAGVPFFSLAGSDFVEMFVGVGASRVRDLFKEAQKMAPCI 298

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        L++ A   P      L
Sbjct: 299 IFIDEIDAIGKSRDSRYGGGNDEREQTLNQLLAEMDGFDTSKGLLILAATNRPEVLDKAL 358

Query: 156 --------------PDLCSRL 162
                         PDL  RL
Sbjct: 359 LRPGRFDRRIIVDKPDLKGRL 379


>gi|257877045|ref|ZP_05656698.1| AAA ATPase [Enterococcus casseliflavus EC20]
 gi|257811211|gb|EEV40031.1| AAA ATPase [Enterococcus casseliflavus EC20]
          Length = 425

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  +R + R  N A           +   +     +LL+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTRYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+     +    +++ A T      +  P + SR     + ++    +
Sbjct: 102 RLDKTKQDFLLPHL-----ESGKIIMIGATTENPYITIN-PAIRSR---TQIFEVKPLQE 152

Query: 176 DFLEKVIVKMFAD--RQI 191
           + +   I +  AD  R +
Sbjct: 153 EDILTAIDQALADETRGL 170


>gi|238854211|ref|ZP_04644556.1| ABC-type proline/glycine betaine transport system, ATPase component
           [Lactobacillus gasseri 202-4]
 gi|238833147|gb|EEQ25439.1| ABC-type proline/glycine betaine transport system, ATPase component
           [Lactobacillus gasseri 202-4]
          Length = 319

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 23/84 (27%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           + +LVGPSGSGK+ L  ++                + ++  T+  +LL+D  + +++  +
Sbjct: 29  IFVLVGPSGSGKTTLLKMF----------------NRLIEPTKGEILLDDKSIKEYDLRK 72

Query: 126 LFHIINSIHQYDSSLLMTARTFPV 149
           L        +    +L TA  FP 
Sbjct: 73  L-------REKTGYVLQTASLFPN 89


>gi|221102685|ref|XP_002168499.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 769

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 475 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 531



 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 70/188 (37%), Gaps = 57/188 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R ++L GP G+GK+               + +  + +    ++   + +++ID +   
Sbjct: 233 PPRGILLYGPPGTGKT---------------NVLKIAFEEAEKNSPSIIFIDEIDSIAPK 277

Query: 123 DT------------QLFHIINSIHQYDSSLLMTARTFPVSW--------------GVCLP 156
                         QL  +++ + Q    ++M A   P S                + +P
Sbjct: 278 REKTHGEVERRIVSQLLTLMDGLKQRSHVIIMAATNRPNSIDPALRRFGRFDREVDIGIP 337

Query: 157 DLCSRLKAATVVKIS----LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
           D   RL+   +++I       DD+     + ++ A+   ++   +A+        S    
Sbjct: 338 DASGRLE---ILRIHTKNMKLDDE---VDLEQIAAETHGYVGSDVASLC------SEAAL 385

Query: 213 EKLVDKMD 220
           +++ +KMD
Sbjct: 386 QQIREKMD 393


>gi|124023247|ref|YP_001017554.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963533|gb|ABM78289.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus
           str. MIT 9303]
          Length = 638

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 84/251 (33%), Gaps = 55/251 (21%)

Query: 30  FSFPRCLGISRDDLL-VHSA---IEQAVRLIDSWPSWPS------RVVILVGPSGSGKSC 79
           F+     G+  DD+  V  A   +E+ V  +     + S      R V+LVGP G+GK+ 
Sbjct: 170 FAMEAETGVKFDDVAGVSEAKQDLEEVVTFLKKPERFTSVGAQIPRGVLLVGPPGTGKTL 229

Query: 80  LANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLL---- 119
           LA   + ++    FS        + +                     + +++ID +    
Sbjct: 230 LAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENTPCLIFIDEIDAVGRQR 289

Query: 120 -----DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV- 167
                  ND       QL   ++        +++ A   P      L      ++     
Sbjct: 290 GAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSAL------MRPGRFD 343

Query: 168 --VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL- 224
             V +  PD      ++     D+++  D  L   + +R       A  L + ++  A+ 
Sbjct: 344 RQVSVDSPDIKGRLAILEVHARDKKLEEDLSLKN-VARRTP-GFTGA-DLANLLNEAAIL 400

Query: 225 -SRGMGITRSL 234
            +R      SL
Sbjct: 401 TARRRKKAISL 411


>gi|111222751|ref|YP_713545.1| hypothetical protein FRAAL3336 [Frankia alni ACN14a]
 gi|111150283|emb|CAJ61980.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 425

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 8/116 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------NIAKSLDSILIDTRKPVLLEDI 116
             VV+L GP   GKS L    +    +           + A    ++ +    PV +++ 
Sbjct: 24  EPVVLLQGPRSVGKSTLLRGLAADLGAELIDLDDLASRDAAARDPALFVTGAGPVCIDEY 83

Query: 117 DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
             +      +   +N   +    +L T      +       L  RL    V  +S 
Sbjct: 84  QHVPIILDAIKAELNRDGRPGRFVL-TGSARHEALPRAAQALTGRLHRLPVYPLSQ 138


>gi|73667298|ref|YP_303314.1| Holliday junction DNA helicase B [Ehrlichia canis str. Jake]
 gi|97190039|sp|Q3YRD9|RUVB_EHRCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|72394439|gb|AAZ68716.1| Holliday junction DNA helicase subunit RuvB [Ehrlichia canis str.
           Jake]
          Length = 329

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSIL--IDTRKPVLLE 114
           P   V+L GP G GK+ LA+I +       +S +    + A  L +IL  +  +  + ++
Sbjct: 50  PMDHVLLYGPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFID 109

Query: 115 DIDLLDFNDTQLF 127
           +I  L+ N  ++ 
Sbjct: 110 EIHRLNRNIEEIL 122


>gi|49482941|ref|YP_040165.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257424804|ref|ZP_05601231.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427472|ref|ZP_05603871.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430103|ref|ZP_05606487.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257432805|ref|ZP_05609165.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257435709|ref|ZP_05611757.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903312|ref|ZP_06311203.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905092|ref|ZP_06312950.1| ATP-binding cassette subfamily B bacterial [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908069|ref|ZP_06315900.1| ABC transporter, CydDC cysteine exporter (CydDC-E) family,
           permease/ATP-binding protein CydC [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910329|ref|ZP_06318133.1| ABC transporter, CydDC cysteine exporter (CydDC-E) family,
           permease/ATP-binding protein CydC [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282913522|ref|ZP_06321311.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282918475|ref|ZP_06326212.1| ATP-binding cassette, subfamily B protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282923440|ref|ZP_06331120.1| ATP-binding cassette, subfamily B [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957514|ref|ZP_06374967.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500569|ref|ZP_06666420.1| ATP-binding cassette, subfamily B, bacterial [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509515|ref|ZP_06668226.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|293524101|ref|ZP_06670788.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295427261|ref|ZP_06819896.1| ATP-binding cassette-containing protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297590390|ref|ZP_06949029.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus aureus subsp. aureus MN8]
 gi|49241070|emb|CAG39748.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272374|gb|EEV04497.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275665|gb|EEV07138.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279300|gb|EEV09901.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257282220|gb|EEV12355.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284900|gb|EEV15019.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314308|gb|EFB44698.1| ATP-binding cassette, subfamily B [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317609|gb|EFB47981.1| ATP-binding cassette, subfamily B protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282322554|gb|EFB52876.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325721|gb|EFB56029.1| ABC transporter, CydDC cysteine exporter (CydDC-E) family,
           permease/ATP-binding protein CydC [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327734|gb|EFB58016.1| ABC transporter, CydDC cysteine exporter (CydDC-E) family,
           permease/ATP-binding protein CydC [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331917|gb|EFB61428.1| ATP-binding cassette subfamily B bacterial [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282596267|gb|EFC01228.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790965|gb|EFC29780.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290921064|gb|EFD98125.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095574|gb|EFE25835.1| ATP-binding cassette, subfamily B, bacterial [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467612|gb|EFF10127.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128649|gb|EFG58280.1| ATP-binding cassette-containing protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297576689|gb|EFH95404.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312438893|gb|ADQ77964.1| MsbA family ABC superfamily ATP binding cassette transporter, ABC
           protein [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194300|gb|EFU24692.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 557

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 16/72 (22%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            + +VGPSGSGKS L  I                +  +       +  E++D+ + +D  
Sbjct: 359 KIAIVGPSGSGKSTLLQI----------------MAGLYQLDSGSIRFENMDMFEIDDKD 402

Query: 126 LFHIINSIHQYD 137
            F  +N + Q  
Sbjct: 403 KFEALNVLLQSQ 414


>gi|19074903|ref|NP_586409.1| PROTEASOME REGULATORY SUBUNIT YTA6 OF THE AAA FAMILY OF ATPASES
           [Encephalitozoon cuniculi GB-M1]
 gi|19069628|emb|CAD26013.1| PROTEASOME REGULATORY SUBUNIT YTA6 OF THE AAA FAMILY OF ATPASES
           [Encephalitozoon cuniculi GB-M1]
          Length = 425

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R ++L GP G+GK+ +    + + ++T FS  A SL S  +   + ++          
Sbjct: 186 PPRGLLLFGPPGTGKTMIGKCIASQCKATFFSISASSLTSKWVGEGEKMV---------- 235

Query: 123 DTQLFHI 129
              LFH+
Sbjct: 236 -RALFHL 241


>gi|326433195|gb|EGD78765.1| hypothetical protein PTSG_11780 [Salpingoeca sp. ATCC 50818]
          Length = 1521

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 23/103 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--LLED--IDLLDFN 122
           ++L+G  G+GK+ L    +              LD +  +   P+   +E+   D     
Sbjct: 827 LVLIGMRGAGKTTLGRAAAAYLGYDFID-----LDDLFEEKHGPIPAFIEERGWDEFRQQ 881

Query: 123 DTQLF------HIINSIHQYDSSL--------LMTARTFPVSW 151
           +          H  N++      +        L+     P++W
Sbjct: 882 EQAALEEALEQHAYNTVVSCGGGVVETPACRELLAGSRLPIAW 924


>gi|322490859|emb|CBZ26123.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 571

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            +L GP G GK+ LA   + ++  + F       D + +      + E       N   L
Sbjct: 135 ALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEMFVGVGARRVRELFAAAKANSPAL 194


>gi|332160750|ref|YP_004297327.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604629|emb|CBY26127.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664980|gb|ADZ41624.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859949|emb|CBX70278.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           enterocolitica W22703]
          Length = 423

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55
           ++++E+     P ++++  P           P  +    DD ++    A   +  AV   
Sbjct: 46  DIIREEIKEVAPHRERSSLPT----------PHEIRRHLDDYVIGQEPAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|311067743|ref|YP_003972666.1| hypothetical protein BATR1942_03905 [Bacillus atrophaeus 1942]
 gi|310868260|gb|ADP31735.1| hypothetical protein BATR1942_03905 [Bacillus atrophaeus 1942]
          Length = 245

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 28/146 (19%)

Query: 45  VHSAIEQAVRLIDSWPS---WPSRVVILVGPSGSGKSCLANIWSDK-------------- 87
           V  A E A   ++ +          + L+G  GSGK+ L    +++              
Sbjct: 74  VIDAYECAAEFVEHFQDIQSARKNSIALLGQPGSGKTHLLTAAANRLMKTQHVPVVYFPF 133

Query: 88  -SRSTRFSNIAKSLDSIL--IDTRKPVLLEDI--------DLLDFNDTQLFHIINSIHQY 136
               T   N    L++ L  I     + ++D+           D+   Q++ +IN  +  
Sbjct: 134 VEGFTDLKNDFDLLEAKLSRIKQSGVLFIDDLFKPVNGKPRATDWQIEQMYSVINYRYLN 193

Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRL 162
              +L+++             L +R+
Sbjct: 194 HKPILLSSELTVEELVRVDEALGTRI 219


>gi|300120910|emb|CBK21152.2| unnamed protein product [Blastocystis hominis]
          Length = 625

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 15/120 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
             L G  G GKS L   +   S + ++        ++ I       ++   L + N+   
Sbjct: 420 AFLFGAHGVGKSSLLRRFLGSSPAGKYLPDQSLKTAVNIVKHGEGAVDSFILTEVNEET- 478

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPD-------LCSRLKAATVVKISLPDDDFLE 179
               N   ++    L       + W V  PD       LCSR    T V +     D L 
Sbjct: 479 ---ENQAFEH----LRFCDLACLVWDVTRPDSLHYVMRLCSRFPRGTKVLLVAMKSDLLR 531


>gi|295132462|ref|YP_003583138.1| Holliday junction DNA helicase B [Zunongwangia profunda SM-A87]
 gi|294980477|gb|ADF50942.1| Holliday junction DNA helicase B [Zunongwangia profunda SM-A87]
          Length = 340

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 21/99 (21%)

Query: 38  ISRDDL------------LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +S DD              V +A  ++  L            +L GP G GK+ LA+I +
Sbjct: 26  LSFDDFAGQEQVLDNLKVFVAAANLRSEAL---------DHTLLHGPPGLGKTTLAHILA 76

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++            LD           L++ D+L  ++ 
Sbjct: 77  NELGVGLKITSGPVLDKPGDLAGLLTNLDERDILFIDEI 115


>gi|258590861|emb|CBE67156.1| putative insertion sequence IS21 ATP-binding protein [NC10
           bacterium 'Dutch sediment']
          Length = 256

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 56/149 (37%), Gaps = 26/149 (17%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLAN----IW 84
            P+   +   D  +   +  +V        W      V+ L G +G+GK+ LA     + 
Sbjct: 69  LPKVKTLEDFDFTMAPQVSASVVRTLGTGDWIGRAEPVLFL-GDAGTGKTHLAIALAVVA 127

Query: 85  SDKSRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFNDTQ---LF 127
             + +  RF+  A+ ++ ++                  + ++++++  +   +T    LF
Sbjct: 128 CRQRKRVRFTTAAELVNELMEARHQNELSRVLARWMRYEVLVVDEMAYVTMPETAGEVLF 187

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLP 156
            +I +     +++++T       W    P
Sbjct: 188 QVI-AGRAERAAVIVTTNLPFSEWTTMFP 215


>gi|238764859|ref|ZP_04625800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           kristensenii ATCC 33638]
 gi|238696966|gb|EEP89742.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           kristensenii ATCC 33638]
          Length = 423

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55
           ++++E+     P ++++  P           P  +    DD ++    A   +  AV   
Sbjct: 46  DIIREEIKEVAPHRERSSLPT----------PHEIRRHLDDYVIGQEPAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|225464698|ref|XP_002277539.1| PREDICTED: hypothetical protein isoform 3 [Vitis vinifera]
          Length = 730

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 450 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 481


>gi|218133571|ref|ZP_03462375.1| hypothetical protein BACPEC_01438 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990946|gb|EEC56952.1| hypothetical protein BACPEC_01438 [Bacteroides pectinophilus ATCC
           43243]
          Length = 332

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I S++  +        +++           L + D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLASIISNEMGTNLKVTSGPAIEKPGEMAAILNNLNEGDVLFVDEI-- 113

Query: 127 FHIINSIHQY---------DSSLLMTARTFPVSWGVCLPD----------------LCSR 161
            H +N   +             +++       S  + LP                 L  R
Sbjct: 114 -HRLNRQVEEVLYPAMEDFAIDIVIGKGASARSIRLDLPHFTLVGATTRAGLLTAPLRDR 172

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220
                V  +     + LE++I +      + ID++ A  + +R   +   A +++ ++ D
Sbjct: 173 F--GVVSHLEFYTTEELERIIRRSAQVLGVEIDEEGAHELARRSRGTPRLANRMLKRVRD 230

Query: 221 NLALSRGMGITRSLAAEVLK 240
              +     ITR +A   L 
Sbjct: 231 FAQVRYDGRITREVADYALN 250


>gi|146102932|ref|XP_001469447.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial
           ATP-dependent zinc metallopeptidase [Leishmania
           infantum]
 gi|134073817|emb|CAM72556.1| mitochondrial ATP-dependent zinc metallopeptidase [Leishmania
           infantum JPCM5]
 gi|322503637|emb|CBZ38723.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 571

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            +L GP G GK+ LA   + ++  + F       D + +      + E       N   L
Sbjct: 135 ALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEMFVGVGARRVRELFAAAKANSPAL 194


>gi|2853003|gb|AAC02215.1| valosin-containing protein homolog [Trypanosoma brucei]
 gi|261332619|emb|CBH15614.1| Transitional endoplasmic reticulum ATPase,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 780

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP GSGK+ +A   ++++ +  F                 N+  +      +
Sbjct: 226 PPRGILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRNAFVESEKN 285

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      ++M A   P +    
Sbjct: 286 APAIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGLKGRSQVIVMAATNRPNAID-- 343

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    + I +PD+    +++      + + +D  +
Sbjct: 344 -PALR-RFGRFDREIDIGVPDEIGRLEIL--RIHTKNMKLDPNV 383


>gi|123443341|ref|YP_001007315.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|6225174|sp|O33873|CLPX_YEREN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215219|sp|A1JNN1|CLPX_YERE8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|2580495|gb|AAC45783.1| ClpX [Yersinia enterocolitica]
 gi|122090302|emb|CAL13168.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 423

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55
           ++++E+     P ++++  P           P  +    DD ++    A   +  AV   
Sbjct: 46  DIIREEIKEVAPHRERSSLPT----------PHEIRRHLDDYVIGQEPAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|238751007|ref|ZP_04612503.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           rohdei ATCC 43380]
 gi|238783608|ref|ZP_04627629.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           bercovieri ATCC 43970]
 gi|238795541|ref|ZP_04639056.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           mollaretii ATCC 43969]
 gi|238710697|gb|EEQ02919.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           rohdei ATCC 43380]
 gi|238715486|gb|EEQ07477.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           bercovieri ATCC 43970]
 gi|238720660|gb|EEQ12461.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           mollaretii ATCC 43969]
          Length = 423

 Score = 39.4 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55
           ++++E+     P ++++  P           P  +    DD ++    A   +  AV   
Sbjct: 46  DIIREEIKEVAPHRERSSLPT----------PHEIRRHLDDYVIGQEPAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|332712424|ref|ZP_08432351.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
 gi|332348898|gb|EGJ28511.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L]
          Length = 510

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 48/168 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 91  VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 150

Query: 111 VLLEDIDLLDFN------------DTQLFHII--------N-----SIHQYDSSLLMTAR 145
           + +++ID +               +  L  ++        N           + +L TA 
Sbjct: 151 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADVLDTAL 210

Query: 146 TFPVSWG----VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189
             P  +     V  PDL  R+K   V+++   D     ++ +++ A R
Sbjct: 211 LRPGRFDRQVMVDPPDLKGRIK---VLEVHARDKKLASEISIEVIARR 255


>gi|293603799|ref|ZP_06686215.1| replication-associated recombination protein A [Achromobacter
           piechaudii ATCC 43553]
 gi|292817797|gb|EFF76862.1| replication-associated recombination protein A [Achromobacter
           piechaudii ATCC 43553]
          Length = 446

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G GK+ LA + +D   +   +  A  +   + D R+ V +  +       T L
Sbjct: 55  MIFWGPPGVGKTTLARLMADGFDAQFIAISA--VLGGVKDIREAVTVAQVAQGQGRRTIL 112

Query: 127 F----HIINSIHQY 136
           F    H  N   Q 
Sbjct: 113 FVDEVHRFNKAQQD 126


>gi|295688117|ref|YP_003591810.1| Holliday junction DNA helicase Ruvb [Caulobacter segnis ATCC 21756]
 gi|295430020|gb|ADG09192.1| Holliday junction DNA helicase RuvB [Caulobacter segnis ATCC 21756]
          Length = 346

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 36/201 (17%)

Query: 67  VILVGPSGSGKSCLANI--------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           V+L GP G GK+ LA I        +   S          +     ++    + +++I  
Sbjct: 56  VLLFGPPGLGKTTLAQIVARELGVNFRATSGPVLNKPGDLAAILTNLEANDVLFIDEIHR 115

Query: 119 LDFNDTQLF------HIINSIHQYDSSL-----------LMTARTFPVSWGVCLPDLCSR 161
           L  N  ++       H+++ +     S            L+ A T        L D    
Sbjct: 116 LSSNVEEILYPAMEDHVLDLVIGEGPSARSIRIDLAPFTLVAATTRAGMLATPLRD---- 171

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-- 219
            +    +++       L  V+          +    A  I +R   +   A +L+ ++  
Sbjct: 172 -RFGIPIRLEFYTPAELRHVLQHAARKMGAPLSDDGADEIAKRARGTPRVAGRLLRRVRD 230

Query: 220 ----DNLALSRGMGITRSLAA 236
               D   +        +LA 
Sbjct: 231 FATADGATVIDRKAAGLALAR 251


>gi|295662841|ref|XP_002791974.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226279626|gb|EEH35192.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 961

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 690 PGLLLYGPPGTGKTMLAKAVARQSGATVLE 719


>gi|255659637|ref|ZP_05405046.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
 gi|260848199|gb|EEX68206.1| cell division protein FtsH [Mitsuokella multacida DSM 20544]
          Length = 684

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 57/188 (30%), Gaps = 47/188 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 200 VLLVGPPGTGKTMLAKAVAGEANVPFFSIAGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 259

Query: 111 VLLEDIDLLD--------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151
           V +++ID +          ND       QL   ++        +++ A   P S      
Sbjct: 260 VFIDEIDAIGQKRTGAAMGNDEREQTLNQLLTEMDGFEGNTGVIILAATNRPDSLDPALL 319

Query: 152 ---------GVCLPDLCSR--LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
                     V LPDL  R  +      K+ L DD     +           +   +   
Sbjct: 320 RPGRFDRRVPVELPDLKGREDILKVHAKKVRLADDVNFHTIARMAAGASGAEL-ANIINE 378

Query: 201 IVQRMERS 208
              R  RS
Sbjct: 379 GALRAVRS 386


>gi|224145173|ref|XP_002325552.1| white-brown-complex ABC transporter family [Populus trichocarpa]
 gi|222862427|gb|EEE99933.1| white-brown-complex ABC transporter family [Populus trichocarpa]
          Length = 648

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT----RKPVLLEDI-- 116
           P  ++ ++GPSGSGKS L N  + + ++  F+    + +             V  +DI  
Sbjct: 81  PGEILAILGPSGSGKSTLLNAIAGRIQANGFTGTVLTNNRKPAKQIMKRIGFVTQDDILY 140

Query: 117 DLLDFNDTQLF 127
             L   +T +F
Sbjct: 141 PHLTVRETLVF 151


>gi|224120532|ref|XP_002318353.1| predicted protein [Populus trichocarpa]
 gi|222859026|gb|EEE96573.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ ++  +
Sbjct: 549 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 580


>gi|167997942|ref|XP_001751677.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696775|gb|EDQ83112.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1081

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            +V++L GP G GK+ LA++ + +    R   I  S D +    +  +L
Sbjct: 464 EKVLLLCGPPGLGKTTLAHV-AARHCGYRVVEINASDDRVATTLQGKIL 511


>gi|169806672|ref|XP_001828080.1| 19S-PA700 proteasome regulatory particle subunit Rpt4p-S10b
           [Enterocytozoon bieneusi H348]
 gi|161779208|gb|EDQ31232.1| 19S-PA700 proteasome regulatory particle subunit Rpt4p-S10b
           [Enterocytozoon bieneusi H348]
          Length = 388

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 41/171 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA I +     T    +A SL    I     ++          
Sbjct: 166 PPKGVLLYGPPGTGKTLLAKIVASTMDVTFIKVVASSLIEKYIGESAKMVREMFAYARLK 225

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ----YDSSLLMTARTFPVS 150
                 L++ID +                  L  ++N +          ++M A   P  
Sbjct: 226 APCIIFLDEIDAIGGARTNESNSSDREVQRTLMELLNQLDGFSDLDGVKVIM-ATNRPDI 284

Query: 151 WGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIV---KMFADRQIFIDKKL 197
               L  L   RL     ++I LP++   ++++    K     QI +D  +
Sbjct: 285 LDSAL--LRPGRLD--RKIEIPLPNEHGRKEILKIHSKNMNQDQIDLDTIV 331


>gi|164429437|ref|XP_957491.2| hypothetical protein NCU04414 [Neurospora crassa OR74A]
 gi|157073478|gb|EAA28255.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 460

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            GP G+GK+ LA   + ++ +T        L  + I     ++ +
Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRD 291


>gi|154499593|ref|ZP_02037631.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC
           29799]
 gi|150271671|gb|EDM98915.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC
           29799]
          Length = 625

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 45/142 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + +++   FS        + +                     
Sbjct: 219 VLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCI 278

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++        +L+ A   P S     
Sbjct: 279 VFIDEIDAIGKKRDGAGVGGNDEREQTLNQLLAEMDGFDGRKGVVLLAATNRPESLDPAL 338

Query: 152 ----------GVCLPDLCSRLK 163
                      V LPDL  R+ 
Sbjct: 339 LRPGRFDRRVRVELPDLQGRIA 360


>gi|148358606|ref|YP_001249813.1| ATPase N2B [Legionella pneumophila str. Corby]
 gi|148280379|gb|ABQ54467.1| ATPase N2B (nucleotide (GTP) binding protein) [Legionella
           pneumophila str. Corby]
          Length = 360

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 27/122 (22%)

Query: 57  DSWPSW----PSRVVILVGPSGSGKSCLA-----------------NIWSDKSRS--TRF 93
           DSW  W    P + + + GP G GK+ L                  + +  +  +   R 
Sbjct: 41  DSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRL 100

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----LFHIINSIHQYDSSLLMTARTFPV 149
                 L  I  +  K + L   D    +D      L  ++ ++H Y   L++++ T P 
Sbjct: 101 QGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVISSNTHPD 160

Query: 150 SW 151
             
Sbjct: 161 EL 162


>gi|116747588|ref|YP_844275.1| IstB ATP binding domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116750258|ref|YP_846945.1| IstB ATP binding domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696652|gb|ABK15840.1| IstB domain protein ATP-binding protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699322|gb|ABK18510.1| IstB domain protein ATP-binding protein [Syntrophobacter
           fumaroxidans MPOB]
          Length = 259

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 34/149 (22%)

Query: 32  FPRCLGISRDDLLVHSA------IE-QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           FP    +   D     +       E  A R I +  +     VIL+GP G GK+ LA   
Sbjct: 68  FPFVKTLESFDFAFQPSIDKKRINELAACRFIANGEN-----VILLGPPGVGKTHLAVAL 122

Query: 85  SDKSRSTRFS-------NIAKSLDSILIDTR-----------KPVLLEDIDLLDFNDTQ- 125
             K+ +  +         +  SL     + R           K +++++I  +  +    
Sbjct: 123 GIKAVTEGYRTHFTQAMPLVASLTKAYAENRIEERLKFYCQPKLLIIDEIGYIPIDRHGA 182

Query: 126 --LFHIINSIHQYDSSLLMTARTFPVSWG 152
              F +I+  ++  + L++T+      W 
Sbjct: 183 HLFFQLISRRYERGA-LIVTSNRSFGQWN 210


>gi|219668203|ref|YP_002458638.1| ABC transporter [Desulfitobacterium hafniense DCB-2]
 gi|219538463|gb|ACL20202.1| ABC transporter related [Desulfitobacterium hafniense DCB-2]
          Length = 572

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 22/87 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED--IDLLD 120
           P   + ++GP+GSGKS +A +                L       R  ++L+D  I  L 
Sbjct: 356 PGGSLAIIGPTGSGKSTIAWL----------------LLRFYDADRGRIMLDDYPIQELG 399

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTF 147
            ++ +     N        LL +    
Sbjct: 400 ADEIR----HNIAIVPQKPLLFSGTVA 422


>gi|310801152|gb|EFQ36045.1| 26S proteasome subunit P45 family protein [Glomerella graminicola
           M1.001]
          Length = 460

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            GP G+GK+ LA   + ++ +T        L  + I     ++ +
Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRD 291


>gi|312068505|ref|XP_003137245.1| proteasome 26S subunit [Loa loa]
 gi|307767590|gb|EFO26824.1| proteasome 26S subunit [Loa loa]
          Length = 397

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ ++    I     ++ E        
Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIRE-------- 225

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 226 ------MFNYARDHQ 234


>gi|297538757|ref|YP_003674526.1| AAA ATPase central domain-containing protein [Methylotenera sp.
           301]
 gi|297258104|gb|ADI29949.1| AAA ATPase central domain protein [Methylotenera sp. 301]
          Length = 444

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLED 115
           ++ S     +IL GP G GK+ LA + ++ + +     S +   +  I     +  L+  
Sbjct: 42  AFQSGKLPSMILWGPPGVGKTTLARLIANTAEADFIPISAVLSGIKDIREAVERAELIL- 100

Query: 116 IDLLDFNDTQLF----HIINSIHQY 136
                   T LF    H  N   Q 
Sbjct: 101 --QQHGRKTILFVDEVHRFNKGQQD 123


>gi|256827177|ref|YP_003151136.1| RecA protein [Cryptobacterium curtum DSM 15641]
 gi|256583320|gb|ACU94454.1| RecA protein [Cryptobacterium curtum DSM 15641]
          Length = 352

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            R++ + GP  SGK+ LA     ++++          +  L       L  D+D L  + 
Sbjct: 61  GRIIEIYGPESSGKTTLALHILAEAQALGGIAAFIDAEHALDPVYAARLGVDVDDLLISQ 120


>gi|225216858|gb|ACN85156.1| 26S protease regulatory subunit S10B [Oryza nivara]
          Length = 401

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++          
Sbjct: 174 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYAREH 233

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID +                  L  ++N      +     ++ A   P   
Sbjct: 234 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 293

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L   RL     ++I LP++    +V+    A             I +  E    
Sbjct: 294 DPAL--LRPGRLD--RKIEIPLPNEQSRMEVLKIHAAG------------IAKHGEIDYE 337

Query: 211 FAEKLVDKMDNLALSR 226
              KL +  +   L  
Sbjct: 338 AVVKLAEGFNGADLRN 353


>gi|225464696|ref|XP_002277556.1| PREDICTED: hypothetical protein isoform 4 [Vitis vinifera]
          Length = 783

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ ++  +
Sbjct: 506 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 537


>gi|218245487|ref|YP_002370858.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|257058522|ref|YP_003136410.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
 gi|218165965|gb|ACK64702.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801]
 gi|256588688|gb|ACU99574.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802]
          Length = 628

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 47/215 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 268

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 328

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 ++       V +  PD     +++      R   +D  +    I +R       
Sbjct: 329 ------MRPGRFDRQVIVDAPDFKGRIEILEVHA--RNKKLDPDVSIEAIARRTP-GFSG 379

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           A  L + ++  A+       R  A  +L+     D
Sbjct: 380 A-DLANLLNEAAILTARR--RKPAITLLEIDDAVD 411


>gi|162149486|ref|YP_001603947.1| two-component system, response regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161788063|emb|CAP57667.1| putative two-component system, response regulator
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 446

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 30/176 (17%)

Query: 67  VILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSILI-----DTRKPVLLEDI- 116
           V+L GP+G GK+ LA     + + ++      +     D++ +     D R  +L+E+I 
Sbjct: 199 VLLTGPAGVGKTALARRIHRLSAQRAGRLLVLDPRLGEDTVAVRLAGADARDTLLVEEIG 258

Query: 117 DLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLP- 173
           D       +L      +       LL TAR    +    + PDL  RL    VV I+LP 
Sbjct: 259 DWSPALQDRLLA---RVQAGGGARLLATAREGGAALRASVMPDLLCRLD---VVTIALPP 312

Query: 174 ------DDDFLEKVIVKMFADRQI----FIDKKLAAYIVQR-MERSLVFAEKLVDK 218
                 +   L +  +++FA R       +  +    +  R    ++    + +++
Sbjct: 313 LAARGEEIAVLARHFLRLFALRHGVADRTLSPEAEEALAARPWPDNVRALRQAMER 368


>gi|225428386|ref|XP_002283544.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297744432|emb|CBI37694.3| unnamed protein product [Vitis vinifera]
          Length = 399

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 223


>gi|156848053|ref|XP_001646909.1| hypothetical protein Kpol_2000p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117591|gb|EDO19051.1| hypothetical protein Kpol_2000p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 823

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 246 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 305

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 306 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 365

Query: 155 L 155
           L
Sbjct: 366 L 366



 Score = 36.7 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           PS+ V+  GP G+GK+ LA   + +  +                   SNI    D     
Sbjct: 519 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 578

Query: 107 TRKPVLLEDIDLLD 120
               V L+++D + 
Sbjct: 579 APTVVFLDELDSIA 592


>gi|152981347|ref|YP_001354491.1| transposase [Janthinobacterium sp. Marseille]
 gi|151281424|gb|ABR89834.1| transposase [Janthinobacterium sp. Marseille]
          Length = 270

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 22/107 (20%)

Query: 67  VILVGPSGSGKSCLA-----NIWSDKSR------STRFSNIAKSLDSILID-------TR 108
           VI++GP G GK+ LA            R      +   + + K+     +D       T 
Sbjct: 111 VIILGPPGVGKTHLAVSLGLKAIEAGYRVLFTSAANLIAQLTKAHAEGKLDDKLKVFTTP 170

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
           + +++++I  L  +       F +I+  ++    +++T+     +WG
Sbjct: 171 RLLVIDEIGYLPIDQQGANLFFQLISRRYERG-PMILTSNQSFGAWG 216


>gi|157877019|ref|XP_001686849.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial
           ATP-dependent zinc metallopeptidase
 gi|68129924|emb|CAJ09230.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania major strain
           Friedlin]
          Length = 571

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            +L GP G GK+ LA   + ++  + F       D + +      + E       N   L
Sbjct: 135 ALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEMFVGVGARRVRELFAAAKANSPAL 194


>gi|268557298|ref|XP_002636638.1| C. briggsae CBR-RPT-1 protein [Caenorhabditis briggsae]
 gi|187021089|emb|CAP39671.1| CBR-RPT-1 protein [Caenorhabditis briggsae AF16]
          Length = 435

 Score = 39.4 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 270 KACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 330 DPALMRPGRLDRKVEFALPDLVGR 353


>gi|327439662|dbj|BAK16027.1| ATPase [Solibacillus silvestris StLB046]
          Length = 426

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 78/211 (36%), Gaps = 37/211 (17%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSI 103
            R+I+         ++L GP G GK+ +AN  +  S+              +I + +   
Sbjct: 32  FRMIEK---GHVPSMLLYGPPGVGKTSIANAIAGSSKIPFFALNATHAGKKDIEQIVMDA 88

Query: 104 LIDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
            +  +  + L++I   +    DT L H+ N       S+++   T    +    P + SR
Sbjct: 89  RMSGKVLLFLDEIHRFNKLQQDTLLPHVEN------GSIVLIGATTENPFHDVNPAIRSR 142

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEK 214
                ++++     D + +++ +  AD  R +      I ++    I          A  
Sbjct: 143 --CGEILQLERLTGDDIIQLLNQALADKERGLGHLEIDITEQQIEKIANASNGDARKALT 200

Query: 215 LVDKMDNLALSRGMGITR-------SLAAEV 238
           L++ +   +     G+T        +LA  +
Sbjct: 201 LLESVYYAS-DEKDGVTIINDNAIDALAKRI 230


>gi|313835711|gb|EFS73425.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA2]
 gi|314928383|gb|EFS92214.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL044PA1]
 gi|314970189|gb|EFT14287.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes
           HL037PA3]
 gi|328908037|gb|EGG27796.1| putative cell division protein FtsH [Propionibacterium sp. P08]
          Length = 719

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 47/165 (28%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++    +   +L+ A   P      L
Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184
                         PDL  RLK   V     P  D+  L  +  +
Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILQVHAHGKPMADNVDLASIARR 367


>gi|313897534|ref|ZP_07831076.1| cell division protease FtsH [Clostridium sp. HGF2]
 gi|312957486|gb|EFR39112.1| cell division protease FtsH [Clostridium sp. HGF2]
          Length = 617

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 204 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGRGAARVRDLFKQAREKAPCI 263

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           V +++ID +           ND       QL   ++        +L+ A   P S     
Sbjct: 264 VFIDEIDTIGKKRDGAGVGGNDEREQTLNQLLAEMDGFDGSTGVILLAATNRPESLDQAL 323

Query: 152 ----------GVCLPDLCSR 161
                      V LPDL  R
Sbjct: 324 LRPGRFDRRIPVDLPDLAGR 343


>gi|315055597|ref|XP_003177173.1| 26S protease regulatory subunit 6A [Arthroderma gypseum CBS 118893]
 gi|311339019|gb|EFQ98221.1| 26S protease regulatory subunit 6A [Arthroderma gypseum CBS 118893]
          Length = 461

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 15/84 (17%)

Query: 45  VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
           V    +Q   L+++  WP              P   ++  GP G+GK+ LA   + ++ +
Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267

Query: 91  TRFSNIAKSLDSILIDTRKPVLLE 114
           T        L  + I     ++ +
Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRD 291


>gi|302535218|ref|ZP_07287560.1| cell division protein FtsH [Streptomyces sp. C]
 gi|302444113|gb|EFL15929.1| cell division protein FtsH [Streptomyces sp. C]
          Length = 677

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 209 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 268

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 269 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 328

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P   D  L  V  +        +   L  
Sbjct: 329 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLSAVARRTPGFTGADLSNVLNE 388

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R ++ L+    L + +D 
Sbjct: 389 AALLTARSDKKLIDNHMLDEAIDR 412


>gi|289617504|emb|CBI55739.1| unnamed protein product [Sordaria macrospora]
          Length = 460

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            GP G+GK+ LA   + ++ +T        L  + I     ++ +
Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRD 291


>gi|240279441|gb|EER42946.1| ABC transporter [Ajellomyces capsulatus H143]
 gi|325092570|gb|EGC45880.1| ABC transporter [Ajellomyces capsulatus H88]
          Length = 622

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90
          P  VV+L+GPSGSGK+ L N+ + +  +
Sbjct: 54 PGEVVVLMGPSGSGKTTLLNVLAHRDSA 81


>gi|261189835|ref|XP_002621328.1| cell division cycle protein 48 [Ajellomyces dermatitidis SLH14081]
 gi|239591564|gb|EEQ74145.1| cell division cycle protein 48 [Ajellomyces dermatitidis SLH14081]
 gi|239612906|gb|EEQ89893.1| cell division control protein Cdc48 [Ajellomyces dermatitidis ER-3]
 gi|327352078|gb|EGE80935.1| cell division cycle protein 48 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 822

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 254 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 313

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 314 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNS---V 370

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + +   +
Sbjct: 371 DPALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 411


>gi|254569058|ref|XP_002491639.1| ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric
           complex [Pichia pastoris GS115]
 gi|238031436|emb|CAY69359.1| ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric
           complex [Pichia pastoris GS115]
 gi|328351856|emb|CCA38255.1| ATPase family gene 2 protein [Pichia pastoris CBS 7435]
          Length = 763

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 29/122 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ L    +++  +                   S I        + 
Sbjct: 263 PPRGILLHGPPGTGKTMLLRAVANEENAHVLTINGPSVISKYLGETESTIRDMFREAELY 322

Query: 107 TRKPVLLEDIDLLD----FNDTQ---------LFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID L      +D           L  +++ +      +L+ A   P +   
Sbjct: 323 QPSIIFIDEIDALAPSRNSDDAGETESRIVASLLTLMDGMGNAGRVVLVGATNRPNAIDQ 382

Query: 154 CL 155
            L
Sbjct: 383 AL 384


>gi|255071513|ref|XP_002499431.1| proteasomal ATPase [Micromonas sp. RCC299]
 gi|226514693|gb|ACO60689.1| proteasomal ATPase [Micromonas sp. RCC299]
          Length = 405

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 177 PPKGVLLYGPPGTGKTLLAKAIASNIDANFLKVVSSAIVDKYIGESARLIRE 228


>gi|225562633|gb|EEH10912.1| ABC transporter [Ajellomyces capsulatus G186AR]
          Length = 638

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P  VV+L+GPSGSGK+ L N+ + +  +
Sbjct: 135 PGEVVVLMGPSGSGKTTLLNVLAHRDSA 162


>gi|255538750|ref|XP_002510440.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
 gi|223551141|gb|EEF52627.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
          Length = 399

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 223


>gi|224085722|ref|XP_002307679.1| predicted protein [Populus trichocarpa]
 gi|222857128|gb|EEE94675.1| predicted protein [Populus trichocarpa]
          Length = 402

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 175 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 226


>gi|254451539|ref|ZP_05064976.1| cell division protein FtsH [Octadecabacter antarcticus 238]
 gi|198265945|gb|EDY90215.1| cell division protein FtsH [Octadecabacter antarcticus 238]
          Length = 639

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 46/205 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 190 ALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 249

Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH------QYDSSLLMTARTFPVSWGVC 154
           + +++ID +            ++ +    +N +       + +  +++ A T      V 
Sbjct: 250 IFIDEIDAVGRARGVGMGGGNDERE--QTLNQLLVEMDGFEANEGVIIIAAT--NRKDVL 305

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
            P L   L+       V +  PD    EK++      R+  +   +   I+ R       
Sbjct: 306 DPAL---LRPGRFDRQVTVGNPDIKGREKILGVHA--RKTPLGPDVDLRIIARGSPGFSG 360

Query: 212 AEKLVDKMDNLALSRGMGITRSLAA 236
           A  L + ++  AL+    + R   A
Sbjct: 361 A-DLANLVNEAALTAAR-VGRRFVA 383


>gi|190345884|gb|EDK37849.2| hypothetical protein PGUG_01947 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 768

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 32/153 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P R V+L GP G+GK+ L    +++  +   +                +L  I  + R  
Sbjct: 269 PPRGVLLHGPPGTGKTMLLRSVANEVDAHVLAVNGPSIVSKYLGETENALREIFSEARQY 328

Query: 109 --KPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID L  N                L  +++ + +    +++ A   P S   
Sbjct: 329 QPSIIFMDEIDSLAPNRNSDDSGETESRVVATLLTMMDGMGESGRVVVIGATNRPNSLD- 387

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186
             P L    +    V+I +PD +    ++ K F
Sbjct: 388 --PALRRPGRFDQEVEIGIPDVNARLDILSKQF 418


>gi|186492938|ref|NP_001117544.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332196077|gb|AEE34198.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 827

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ ++  +
Sbjct: 552 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 583


>gi|154279596|ref|XP_001540611.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412554|gb|EDN07941.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 550

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90
          P  VV+L+GPSGSGK+ L N+ + +  +
Sbjct: 54 PGEVVVLMGPSGSGKTTLLNVLAHRDSA 81


>gi|148239452|ref|YP_001224839.1| cell division protein FtsH [Synechococcus sp. WH 7803]
 gi|147847991|emb|CAK23542.1| Cell division protein FtsH [Synechococcus sp. WH 7803]
          Length = 620

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 70/210 (33%), Gaps = 43/210 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 192 RGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAASEFVELFVGVGASRVRDLFRKAKEKSP 251

Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
             V +++ID +           ND       QL   ++        +L+ A         
Sbjct: 252 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFADNSGVILLAATNRADVLDT 311

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      ++       + + LPD    E ++      R +  +  LA +  +R      
Sbjct: 312 AL------MRPGRFDRRIAVGLPDRKGREAILSVHARTRPLAEEVSLADW-ARRTP-GFS 363

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
            A  L + ++  A+      + +L    L+
Sbjct: 364 GA-DLANLLNEAAILTARHQSTTLGNRELE 392


>gi|225458173|ref|XP_002281107.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147800891|emb|CAN75568.1| hypothetical protein VITISV_010255 [Vitis vinifera]
 gi|302142551|emb|CBI19754.3| unnamed protein product [Vitis vinifera]
          Length = 398

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 171 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 222


>gi|118586319|ref|ZP_01543772.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
 gi|118433245|gb|EAV39958.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163]
          Length = 467

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 27/176 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL-----------IDTRKPVLL 113
           +I  GP G GK+ LA I + +S++    FS     +  I               R  V +
Sbjct: 77  MIFWGPPGVGKTTLAEIIAHRSKAKFITFSAATSGIKEIRKIMKDAENNRQFGVRTIVFI 136

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ +    L SR K   + ++   
Sbjct: 137 DEIHRFNKAQQDSFLPY---VEKGSIILIGATTENPSFEINSA-LLSRSKVFVLRQLKSS 192

Query: 174 DDDFLEKVIVKM---FADRQIFIDKKLAAYIVQRMERSLV--FAEKLVDKMDNLAL 224
           D   L +  +K    FA ++I I  +    I            A   ++ ++   L
Sbjct: 193 DIVKLLENALKNPHGFAKQKISISSRTLQLIA-----DFANGDARTALNTLEMAVL 243


>gi|50424825|ref|XP_461002.1| DEHA2F14740p [Debaryomyces hansenii CBS767]
 gi|49656671|emb|CAG89370.1| DEHA2F14740p [Debaryomyces hansenii]
          Length = 415

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +    +    + A ++    I     ++ E
Sbjct: 196 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 243


>gi|18407974|ref|NP_564824.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|15810167|gb|AAL06985.1| At1g64110/F22C12_22 [Arabidopsis thaliana]
 gi|30102500|gb|AAP21168.1| At1g64110/F22C12_22 [Arabidopsis thaliana]
 gi|332196076|gb|AEE34197.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 824

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ ++  +
Sbjct: 549 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 580


>gi|30696968|ref|NP_849842.1| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332196075|gb|AEE34196.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 829

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ ++  +
Sbjct: 554 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 585


>gi|326574344|gb|EGE24287.1| recombination factor protein RarA [Moraxella catarrhalis CO72]
          Length = 412

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113
             +IL G +G GK+ LA + +D         S ++            D  L      V +
Sbjct: 39  PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98

Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++I   +      L        +     L+ A T   S+ V    L SR     V K+  
Sbjct: 99  DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225
             DD +  +IV+      +   K +    +   ++ S     + ++ ++ +A +
Sbjct: 151 LSDDEIYALIVRAIRQDALLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAA 204


>gi|307212720|gb|EFN88396.1| ATPase WRNIP1 [Harpegnathos saltator]
          Length = 562

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK 87
             +IL GP G GK+ LAN+ + +
Sbjct: 153 PNMILWGPPGCGKTSLANVIAHR 175


>gi|254714274|ref|ZP_05176085.1| recombination factor protein RarA [Brucella ceti M644/93/1]
 gi|254717711|ref|ZP_05179522.1| recombination factor protein RarA [Brucella ceti M13/05/1]
 gi|261219553|ref|ZP_05933834.1| recombination factor protein RarA [Brucella ceti M13/05/1]
 gi|261322048|ref|ZP_05961245.1| recombination factor protein RarA [Brucella ceti M644/93/1]
 gi|260924642|gb|EEX91210.1| recombination factor protein RarA [Brucella ceti M13/05/1]
 gi|261294738|gb|EEX98234.1| recombination factor protein RarA [Brucella ceti M644/93/1]
          Length = 437

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G+GK+ +A + + ++     + S I   +  +              
Sbjct: 49  ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D + +  ++ +        + +D +  A +++  +     A  L +++  
Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218

Query: 222 L 222
            
Sbjct: 219 A 219


>gi|291457503|ref|ZP_06596893.1| proteasome-activating nucleotidase [Bifidobacterium breve DSM
           20213]
 gi|291381338|gb|EFE88856.1| proteasome-activating nucleotidase [Bifidobacterium breve DSM
           20213]
          Length = 401

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 22/95 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + VI  G  G+GK+ LA I ++ + +  +     ++                 +   D
Sbjct: 186 PIKGVIFTGAPGTGKTHLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQAD 245

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
            R  +  ++ID +  +        N  +     L+
Sbjct: 246 KRAIIFFDEIDSIASSRE------NDTNGVGKRLV 274


>gi|254419693|ref|ZP_05033417.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp.
           BAL3]
 gi|196185870|gb|EDX80846.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp.
           BAL3]
          Length = 654

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 200 ALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 259

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++     +  +L+ A   P      L
Sbjct: 260 IFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDPAL 319

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD    E+++     D  + +   +    + R       A
Sbjct: 320 ------LRPGRFDRQVVVPNPDVSGRERILRVHMKD--VPLAADVNVKTIARGTPGFSGA 371

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL+    
Sbjct: 372 -DLANLVNEAALTAARK 387


>gi|154686914|ref|YP_001422075.1| Holliday junction DNA helicase RuvB [Bacillus amyloliquefaciens
           FZB42]
 gi|166231462|sp|A7Z768|RUVB_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|154352765|gb|ABS74844.1| RuvB [Bacillus amyloliquefaciens FZB42]
          Length = 334

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 114 -HRLNRSIEE 122


>gi|134056206|emb|CAK96381.1| unnamed protein product [Aspergillus niger]
          Length = 1049

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 776 PGLLLYGPPGTGKTLLAKAVARESGATVLE 805


>gi|114800414|ref|YP_758881.1| Holliday junction DNA helicase RuvB [Hyphomonas neptunium ATCC
           15444]
 gi|123028468|sp|Q0C5W2|RUVB_HYPNA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114740588|gb|ABI78713.1| Holliday junction DNA helicase RuvB [Hyphomonas neptunium ATCC
           15444]
          Length = 344

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 32/203 (15%)

Query: 67  VILVGPSGSGKSCLANI--------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           V+L GP G GK+ LA I        +   S          +     ++    + +++I  
Sbjct: 57  VLLFGPPGLGKTTLAQILAREMGVGFRATSGPVIAKAGDLAAILTNLEPNDVLFIDEIHR 116

Query: 119 L-DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC--------SR--LKAATV 167
           L    +  L+  +      D +L +     P +  V L DL         +R  L A  +
Sbjct: 117 LPAIVEEILYPAM-----EDYALDLVIGEGPAARSVRL-DLAPFTLVGATTRAGLLATPL 170

Query: 168 -------VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
                  V++   + + L ++++       + I +  A  I  R   +   A +L+ ++ 
Sbjct: 171 RDRFGIPVRLEFYEPEELGRIVMAAARKLGVPITEDGAVEISARARGTPRIALRLLRRVR 230

Query: 221 NLALSRGMGITRSLAAEVLKETQ 243
           + A + G  I R+ AA  LK  +
Sbjct: 231 DFAEAEGADINRASAARALKRLE 253


>gi|54022420|ref|YP_116662.1| putative ATPase [Nocardia farcinica IFM 10152]
 gi|54013928|dbj|BAD55298.1| putative ATPase [Nocardia farcinica IFM 10152]
          Length = 322

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 24/106 (22%)

Query: 67  VILVGPSGSGKS----CLANIWSDKSRSTRFSNIAKSL-----DSILIDTRKPVLLEDID 117
           V L G  G GK+     L      ++R   F      L     D+  +D     L+ D +
Sbjct: 41  VYLHGRPGRGKTMLMDHLLAATRTRTRRWHFHEFFALLHRARQDAGSVDGALTALIGDAE 100

Query: 118 LLDFNDTQLFH------------IINSIHQYDSSLLMTARTFPVSW 151
           L+ F++   FH            +++++      L++T+   P   
Sbjct: 101 LVCFDE---FHADDIGDAMLMARLLDALFARRVPLVVTSNQRPEQL 143


>gi|312090391|ref|XP_003146598.1| 26S protease regulatory subunit 6A [Loa loa]
 gi|307758239|gb|EFO17473.1| 26S protease regulatory subunit 6A [Loa loa]
          Length = 440

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ +A   + +++ST        L  + I     ++          
Sbjct: 220 PPKGVLLYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 279

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N        D   ++ A       
Sbjct: 280 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDIKVIAATNRVDVL 339

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     +++  P +D   +++      R++ + K +    + R      
Sbjct: 340 DPAL--LRSGRLD--RKIELPSPTEDARARIMQ--IHSRKMNVHKDVNFEELARCTDDFN 393

Query: 211 FAE 213
            A+
Sbjct: 394 GAQ 396


>gi|227510161|ref|ZP_03940210.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190366|gb|EEI70433.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 424

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 16/131 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD      F +   + +  + +L+ A T      +  P + SR     + ++       
Sbjct: 102 RLDKTKQD-FLL--PLLEKGAIILIGATTENPYININ-PAIRSR---TQIFEVHPLSPKD 154

Query: 178 LEKVIVKMFAD 188
           +++ +++   D
Sbjct: 155 IKQAVLRALKD 165


>gi|293337100|ref|NP_001168382.1| hypothetical protein LOC100382151 [Zea mays]
 gi|223947901|gb|ACN28034.1| unknown [Zea mays]
          Length = 710

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 38/190 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           V+LVGP G+GK+ LA   + ++    FS      + + +                     
Sbjct: 259 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 318

Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--P 156
           + +++ID +  +              QL   ++   Q +  +++ A  FP S    L  P
Sbjct: 319 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP 378

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
               R      + +  PD +   +++    +   I     +   I+ R       A  L 
Sbjct: 379 ---GRFD--RHIVVPNPDVEGRRQILESHMSK--ILKGDDVDLMIIARGTPGFSGA-DLA 430

Query: 217 DKMDNLALSR 226
           + ++  AL  
Sbjct: 431 NLVNVAALKA 440


>gi|156368983|ref|XP_001627970.1| predicted protein [Nematostella vectensis]
 gi|156214934|gb|EDO35907.1| predicted protein [Nematostella vectensis]
          Length = 442

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F +++ S
Sbjct: 164 PWRGILLYGPPGTGKSYLAKAVATEANNSTFISVSSS 200


>gi|156087018|ref|XP_001610916.1| 26S protease regulatory subunit 7 [Babesia bovis T2Bo]
 gi|154798169|gb|EDO07348.1| 26S protease regulatory subunit 7, putative [Babesia bovis]
          Length = 425

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 200 PPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARLVRE 251


>gi|81361324|gb|ABB71500.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361328|gb|ABB71502.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361330|gb|ABB71503.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361332|gb|ABB71504.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361334|gb|ABB71505.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361336|gb|ABB71506.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361338|gb|ABB71507.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361340|gb|ABB71508.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361342|gb|ABB71509.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361344|gb|ABB71510.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361346|gb|ABB71511.1| chromosomal replication initiator protein [Wolbachia pipientis]
 gi|81361348|gb|ABB71512.1| chromosomal replication initiator protein [Wolbachia pipientis]
          Length = 134

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
           L    V  I+    +    ++        +++ K +  ++ + ++ ++   E  ++K+ +
Sbjct: 1   LGWGLVADINETTFELRLGILQAKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTH 60

Query: 222 LALSRGMGITRSLAAEVL 239
            +L  G  +T   A+E L
Sbjct: 61  TSLI-GRSMTVESASETL 77


>gi|115511394|dbj|BAF34303.1| putative transcriptional regulator [Pseudonocardia sp. TY-7]
          Length = 591

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 64/219 (29%), Gaps = 45/219 (20%)

Query: 44  LVHSA----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           +V S+       A  L           ++L G  G GK+ LA     +    RFS +   
Sbjct: 326 VVGSSPVWRNRVAEAL---SAFGSDGGLLLTGEHGIGKTHLAKALHRRLAPGRFSTLLDM 382

Query: 100 LDSILIDTRKPVLLEDIDLLDFNDTQLFHI----INS----------IHQYDSSLLMTAR 145
            D   +         D D L+ +   L H+     N           +      + + A 
Sbjct: 383 RDPATVLPSHLGEPSD-DGLEPSTLILAHLDEVPWNRRREVSRWLDGVRAERGLVRVAAT 441

Query: 146 TFPVSWG----------VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
                            V LP L  R+            ++    +  ++ A R++    
Sbjct: 442 CSSAQLPEDMSHHFGAEVRLPVLRERVSDI---------EELAVHLTERIPAARRLRCAD 492

Query: 196 KLAAYIVQ-RMERSLVFAEKLVDKMDNLALSRGMGITRS 233
           +    + + R   ++       D +   ALS    + R 
Sbjct: 493 ETLRILARGRWPGNVAELR---DCLRRAALSCDGEVIRP 528


>gi|86132693|ref|ZP_01051285.1| cell division ATP-binding protein FtsE [Dokdonia donghaensis
          MED134]
 gi|85816647|gb|EAQ37833.1| cell division ATP-binding protein FtsE [Dokdonia donghaensis
          MED134]
          Length = 227

 Score = 39.4 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 9/52 (17%)

Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKS 78
          Q            R++L++          I+     P   V L+G +GSGKS
Sbjct: 3  QPVLQLSHAAIYQRENLILSEVNVT----IE-----PGDFVYLIGKTGSGKS 45


>gi|325915378|ref|ZP_08177695.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937]
 gi|325538425|gb|EGD10104.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937]
          Length = 457

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 65/200 (32%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125
           +IL GP G GK+ LA + +  + +  F  I+  L  +    +  VL E          T 
Sbjct: 62  MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLPDVRQ--VLAEAAQRFASGRRTV 118

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLESVS 175

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  D     +      +R +      +       I    +  +  A  L++    LA 
Sbjct: 176 PQDIVDALQRAL---HDPERGLGQETIQVSDASLLEIASAADGDVRRALTLLEIAAELAG 232

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 233 GEGGEITPQTLLQVLADRTR 252


>gi|317143566|ref|XP_001819556.2| AAA family ATPase [Aspergillus oryzae RIB40]
          Length = 769

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 527 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 566


>gi|317026654|ref|XP_001399304.2| spastin [Aspergillus niger CBS 513.88]
          Length = 964

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 691 PGLLLYGPPGTGKTLLAKAVARESGATVLE 720


>gi|297288904|ref|XP_001101055.2| PREDICTED: peroxisome biogenesis factor 1 isoform 2 [Macaca
           mulatta]
          Length = 1216

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 20/79 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSILIDT 107
           +  ++L G  GSGKS LA     ++                R  R  NI K+L+    + 
Sbjct: 566 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEA 625

Query: 108 R----KPVLLEDIDLLDFN 122
                  VLL+D+D +   
Sbjct: 626 VWMQPSVVLLDDLDHIAGP 644



 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 851 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 898


>gi|264677388|ref|YP_003277294.1| ATP-dependent Clp protease ATP-binding subunit [Comamonas
           testosteroni CNB-2]
 gi|262207900|gb|ACY31998.1| ATP-dependent Clp protease, ATP-binding subunit [Comamonas
           testosteroni CNB-2]
          Length = 420

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 17/72 (23%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
                   +DD+ +  +                  ++L+GP+GSGK+ LA   + +    
Sbjct: 99  LNHKDKAGKDDVELSKSN-----------------ILLIGPTGSGKTLLAQTLARQLNVP 141

Query: 92  RFSNIAKSLDSI 103
                A +L   
Sbjct: 142 FVMADATTLTEA 153


>gi|257870359|ref|ZP_05650012.1| AAA ATPase [Enterococcus gallinarum EG2]
 gi|257804523|gb|EEV33345.1| AAA ATPase [Enterococcus gallinarum EG2]
          Length = 279

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL--ANIWS 85
            +A + A R ++S  +   + ++L G SGSGKS L  A  W+
Sbjct: 106 TAAAKMAQRFVESVINGEPKHMVLGGKSGSGKSHLSMAATWA 147


>gi|238923099|ref|YP_002936612.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
 gi|238874771|gb|ACR74478.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656]
          Length = 707

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 45/141 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 239 ALLVGPPGTGKTLLAKAVAGEAGVPFFSLAGSDFVEMFVGVGASRVRDLFKEAQKMAPCI 298

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        L++ A   P      L
Sbjct: 299 IFIDEIDAIGKSRDSRYGGGNDEREQTLNQLLAEMDGFDTSKGLLILAATNRPEVLDKAL 358

Query: 156 --------------PDLCSRL 162
                         PDL  RL
Sbjct: 359 LRPGRFDRRIIVDKPDLKGRL 379


>gi|242790258|ref|XP_002481526.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718114|gb|EED17534.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 842

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 584 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 623


>gi|213403938|ref|XP_002172741.1| 19S proteasome regulatory subunit Rpt1 [Schizosaccharomyces
           japonicus yFS275]
 gi|212000788|gb|EEB06448.1| 19S proteasome regulatory subunit Rpt1 [Schizosaccharomyces
           japonicus yFS275]
          Length = 438

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 212 PPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 263


>gi|212534472|ref|XP_002147392.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
 gi|210069791|gb|EEA23881.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224]
          Length = 842

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 584 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 623


>gi|207724321|ref|YP_002254718.1| istb-like atp binding protein (partial sequence c terminus)
           [Ralstonia solanacearum MolK2]
 gi|206589537|emb|CAQ36498.1| probable istb-like atp binding protein (partial sequence c
           terminus) [Ralstonia solanacearum MolK2]
          Length = 255

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 86  ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 140

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 141 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 198

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 199 FTQWATAFAD 208


>gi|253700969|ref|YP_003022158.1| Sigma 54 interacting domain protein [Geobacter sp. M21]
 gi|251775819|gb|ACT18400.1| Sigma 54 interacting domain protein [Geobacter sp. M21]
          Length = 672

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 10/103 (9%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKS-----CLANIWSDKSRSTRFSNIAKSLDSILIDT 107
           V  I        R +++ G +GSGKS      LA I  + +R    ++    L       
Sbjct: 192 VASIRIPEDLSRRHILIAGQTGSGKSTVLIQHLAAI-QNATRRAIANDFKGELVERFYRP 250

Query: 108 RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVS 150
            K ++L  ID         + + N +        +T    P +
Sbjct: 251 EKDLILNPIDARGVG----WTLFNELKSKPDLTAVTGSLIPPA 289


>gi|221068423|ref|ZP_03544528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas
           testosteroni KF-1]
 gi|299533086|ref|ZP_07046472.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas
           testosteroni S44]
 gi|220713446|gb|EED68814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas
           testosteroni KF-1]
 gi|298718971|gb|EFI59942.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas
           testosteroni S44]
          Length = 420

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 17/72 (23%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
                   +DD+ +  +                  ++L+GP+GSGK+ LA   + +    
Sbjct: 99  LNHKDKAGKDDVELSKSN-----------------ILLIGPTGSGKTLLAQTLARQLNVP 141

Query: 92  RFSNIAKSLDSI 103
                A +L   
Sbjct: 142 FVMADATTLTEA 153


>gi|207725293|ref|YP_002255689.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2]
 gi|17865161|gb|AAL47164.1|AF450275_2 putative transposition helper protein [Ralstonia solanacearum]
 gi|206590528|emb|CAQ37490.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2]
          Length = 262

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 93  ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 147

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 148 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 205

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 206 FTQWATAFAD 215


>gi|78223596|ref|YP_385343.1| FtsH peptidase [Geobacter metallireducens GS-15]
 gi|78194851|gb|ABB32618.1| FtsH peptidase, Metallo peptidase, MEROPS family M41 [Geobacter
           metallireducens GS-15]
          Length = 619

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 43/210 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------DTRKP 110
           V+LVGP G+GK+ LA   + ++  T  S  A     + +                     
Sbjct: 211 VLLVGPPGTGKTLLARAVAGEAGVTFLSITASQFIEMFVGVGAGRVRDLFATAKKSAPSI 270

Query: 111 VLLEDIDLLDF----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            ++      QL   ++    +D  ++M A   P      L
Sbjct: 271 IFIDEIDAVGRSRGAGLGGGHDEREQTLNQLLSEMDGFDPHDEVIVMAATNRPDVLDAAL 330

Query: 156 PDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V I  PD    EK++      R+I +DK ++  ++ R    +  A
Sbjct: 331 ------LRPGRFDRHVVIDRPDWRDREKILQVH--TRKIPMDKDVSLAVIARGTPGMTGA 382

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             L + ++  A+      + ++  E L+  
Sbjct: 383 -DLENLVNEAAILAARENSSTVTMEHLERA 411


>gi|20093057|ref|NP_619132.1| proteasome-activating nucleotidase [Methanosarcina acetivorans C2A]
 gi|19918381|gb|AAM07612.1| proteasome-activating nucleotidase [Methanosarcina acetivorans C2A]
          Length = 441

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L G  G+GK+ LA   + ++ +T    +   L    I     ++ E
Sbjct: 212 PPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVRE 263


>gi|50291931|ref|XP_448398.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527710|emb|CAG61359.1| unnamed protein product [Candida glabrata]
          Length = 359

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   S
Sbjct: 126 PSGVL-LYGPPGCGKTMLAKALAKESGANFIS 156


>gi|145221180|ref|YP_001131858.1| IstB ATP binding domain-containing protein [Mycobacterium gilvum
           PYR-GCK]
 gi|145213666|gb|ABP43070.1| IstB domain protein ATP-binding protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 283

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 47/147 (31%)

Query: 30  FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           F F    G+ RD        D +V                     V+ +GP G+GK+ LA
Sbjct: 92  FDFDHARGLKRDTIAHLGTLDFVVAKDN-----------------VVFLGPPGTGKTHLA 134

Query: 82  ---NIWSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND 123
               I + ++        A    + L +                   ++++++  + F  
Sbjct: 135 IGIAIRACQAGHRVLFATASQWVARLAEAHQGGRLQQELIRLGRYPLLVVDEVGYIPFEP 194

Query: 124 TQ---LFHIINSIHQYDSSLLMTARTF 147
                 F ++ S     +SL++T+   
Sbjct: 195 EAANLFFQLV-SSRYERASLIVTSNKP 220


>gi|332027158|gb|EGI67251.1| Nuclear valosin-containing protein-like protein [Acromyrmex
           echinatior]
          Length = 942

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R  +L GP G GK+ LA+  + +            L + +    +  + E
Sbjct: 310 PPRGFLLHGPPGCGKTLLAHAVAGELNIPLIKVAGPELVTGVSGESEARIRE 361



 Score = 36.7 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           V+L GP G GK+ LA   ++++     S     L
Sbjct: 677 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPEL 710


>gi|320164481|gb|EFW41380.1| 26S proteasome regulatory complex [Capsaspora owczarzaki ATCC
           30864]
          Length = 1105

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   + +S ++  S
Sbjct: 795 VLLYGPPGCGKTLLAKAIAHESGASFIS 822



 Score = 36.7 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R ++L GP G GK+ LAN  + +
Sbjct: 433 PPRGILLHGPPGCGKTLLANAIAGE 457


>gi|227505015|ref|ZP_03935064.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
 gi|227198379|gb|EEI78427.1| crossover junction endodeoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
          Length = 416

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 33/165 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           VIL GP G+GK+ +A++ +                       I  +   ++   R  + +
Sbjct: 34  VILYGPPGTGKTTIASLIAKAIGQNFVGLSALDSGVKQVREVITHARQELIHGRRTVLFI 93

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +  + LL+ A T   S+ V  P     L  + ++++  
Sbjct: 94  DEVHRFSKTQQDALL----AAVENRTVLLVAATTENPSFSVVAPL----LSRSLLLQLEP 145

Query: 173 PDDDFLEKVIVKMF-ADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
            DD  L  +  K   ++R           +  R+  S    E LV
Sbjct: 146 LDDASLRALAQKALTSERG----------LAGRISASEEALEHLV 180


>gi|223648476|gb|ACN10996.1| 26S protease regulatory subunit 4 [Salmo salar]
          Length = 440

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 67/208 (32%), Gaps = 49/208 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146
                 +++ID +                  L  ++N +     + D  ++M        
Sbjct: 278 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTLLELLNQLDGFDSRGDVKVIMATNRIETL 337

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA--AYIVQR 204
            P        D          ++  LPD+    ++     +   + +   +     I+ +
Sbjct: 338 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFNIHTSR--MTVADDVTLDDLILAK 387

Query: 205 MERSLVFAEKLVDKMDNLALSRGM-GIT 231
            + S    + +  +   +AL      +T
Sbjct: 388 DDLSGADIKAICTEAGLMALRERRMKVT 415


>gi|159471532|ref|XP_001693910.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277077|gb|EDP02846.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 219

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GK+ LA   + +SR+T       S+
Sbjct: 12  PPKALLLFGPPGTGKTLLARAVATESRATFLPVTGSSV 49


>gi|83767415|dbj|BAE57554.1| unnamed protein product [Aspergillus oryzae]
          Length = 743

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 527 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 566


>gi|15100181|ref|NP_150239.1| 26S protease regulatory subunit 7 [Rattus norvegicus]
 gi|2492518|sp|Q63347|PRS7_RAT RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2; AltName:
           Full=Protein MSS1
 gi|1395179|dbj|BAA09339.1| proteasomal ATPase (MSS1) [Rattus norvegicus]
          Length = 433

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 369 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403


>gi|85106684|ref|XP_962231.1| hypothetical protein NCU06393 [Neurospora crassa OR74A]
 gi|28923831|gb|EAA32995.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 802

 Score = 39.4 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 53/203 (26%)

Query: 48  AIEQAVRL-------IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           ++ +AVR+       +  + + P +  +L GP G  K+  A   + +S    F+     L
Sbjct: 533 SLRRAVRMSTEPVHVLSRFFARPPKGFLLYGPPGCSKTMAAQAMATESGLNFFAVKGAEL 592

Query: 101 DSILIDTRKPVL----------------LEDIDLLDFNDTQ------------------L 126
            ++ +   +  +                 ++ID +                        L
Sbjct: 593 LNMYVGESERAVRRLFQRAREVAPSMIFFDEIDSIAGQRAGFGHGGSSTSGGSSSGLNVL 652

Query: 127 FHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT---VVKISLPDDDFLEK 180
             ++N           +++ A   P +    L      L+      ++ +S PD +    
Sbjct: 653 TTLLNEMDGFEALTGVVVLAATNRPQALDPAL------LRPGRFDELIYVSPPDQEARAA 706

Query: 181 VIVKMFADRQIFIDKKLAAYIVQ 203
           +  K    RQ+ I  +    +  
Sbjct: 707 IFKKEAEKRQMLIGDEDIKRLAT 729


>gi|326571741|gb|EGE21754.1| recombination factor protein RarA [Moraxella catarrhalis BC8]
          Length = 412

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113
             +IL G +G GK+ LA + +D         S ++            D  L      V +
Sbjct: 39  PSLILHGSAGIGKTTLAMLLADAVGRPFHPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98

Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++I   +      L        +     L+ A T   S+ V    L SR     V K+  
Sbjct: 99  DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225
             DD +  +IV+      +   K +    +   ++ S     + ++ ++ +A +
Sbjct: 151 LSDDEIYALIVRAIRQDTLLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAA 204


>gi|325919437|ref|ZP_08181463.1| Recombination protein MgsA [Xanthomonas gardneri ATCC 19865]
 gi|325550103|gb|EGD20931.1| Recombination protein MgsA [Xanthomonas gardneri ATCC 19865]
          Length = 457

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125
           +IL GP G GK+ LA + +  S +  F  I+  L    +   + VL E          T 
Sbjct: 62  MILWGPPGCGKTTLALLLAHYSDAE-FKAISAVLSG--LPEVRQVLAEAAQRFASGRRTV 118

Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L    T              L SR +   +  +S
Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 175

Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
             D  +     +     ++R +      +       I    +  +  A  L++    LA 
Sbjct: 176 PQDIVEALQRAL---HDSERGLGQETIQVTDASLLEIASAADGDVRRALTLLEIAAELAT 232

Query: 225 SRGMGITRSLAAEVLKETQQ 244
             G  IT     +VL +  +
Sbjct: 233 GEGGEITPQTLLQVLADRTR 252


>gi|317481683|ref|ZP_07940716.1| ATPase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916862|gb|EFV38251.1| ATPase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 459

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 28/144 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA I + +S          ++  K +  +L    + ++         
Sbjct: 63  VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 116

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 117 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 172

Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192
           +   + D   E V   +  DR + 
Sbjct: 173 LESLEPDQLTELVQRALTDDRGLR 196


>gi|270263571|ref|ZP_06191840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia
           odorifera 4Rx13]
 gi|270042455|gb|EFA15550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia
           odorifera 4Rx13]
          Length = 423

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVSPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  S          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDSSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|261822506|ref|YP_003260612.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium
           wasabiae WPP163]
 gi|261606519|gb|ACX89005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Pectobacterium wasabiae WPP163]
          Length = 424

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVSPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  S          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDSSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|303275720|ref|XP_003057154.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461506|gb|EEH58799.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 731

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 50/202 (24%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111
           +LVGP G+GK+ LA   + ++    FS  A     + +                     V
Sbjct: 299 LLVGPPGTGKTLLAKAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIV 358

Query: 112 LLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
            +++ID +           ND       QL   ++        +++ A   P      L 
Sbjct: 359 FIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFEGNTGVIVLAATNRPDVLDSAL- 417

Query: 157 DLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMER-SLV 210
                L+       V + LPD     +++      R   I K +  Y  + +R    S  
Sbjct: 418 -----LRPGRFDRQVTVDLPDVAGRIRILKVHA--RGKTIGKDV-DYDKVARRTPGFSGA 469

Query: 211 FAEKLVDKMDNLA-LSRGMGIT 231
             + L   ++  A L+    +T
Sbjct: 470 ALQNL---LNEAAILAARRDLT 488


>gi|213691690|ref|YP_002322276.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523151|gb|ACJ51898.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457780|dbj|BAJ68401.1| putative ATPase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 402

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 22/95 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + VI  G  G+GK+ LA I ++ + +  +     ++                 +   D
Sbjct: 186 PIKGVIFTGAPGTGKTHLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQAD 245

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
            R  +  ++ID +  +        N  +     L+
Sbjct: 246 KRAIIFFDEIDSIASSRE------NDTNGVGKRLV 274


>gi|168002563|ref|XP_001753983.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694959|gb|EDQ81305.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 465

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +S +T FS  A SL S  +   + ++
Sbjct: 234 PAKGLLLYGPPGNGKTMLAKAVASESAATFFSISASSLTSKWVGEGEKLV 283


>gi|126326483|ref|XP_001374384.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 774

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F     SL +  +   +
Sbjct: 524 SDAFNGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKISGSSLVTKWLGEGE 579

Query: 110 PVL 112
            ++
Sbjct: 580 KIV 582


>gi|50261991|gb|AAT72755.1| rep [Porcine circovirus 1]
          Length = 312

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSRWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEW 259


>gi|326562332|gb|EGE12658.1| recombination factor protein RarA [Moraxella catarrhalis 103P14B1]
 gi|326575536|gb|EGE25461.1| recombination factor protein RarA [Moraxella catarrhalis 101P30B1]
          Length = 412

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113
             +IL G +G GK+ LA + +D         S ++            D  L      V +
Sbjct: 39  PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98

Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++I   +      L        +     L+ A T   S+ V    L SR     V K+  
Sbjct: 99  DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225
             DD +  +IV+      +   K +    +   ++ S     + ++ ++ +A +
Sbjct: 151 LSDDEIYALIVRAIRQDTLLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAA 204


>gi|302560194|ref|ZP_07312536.1| ATP-binding protein [Streptomyces griseoflavus Tu4000]
 gi|302477812|gb|EFL40905.1| ATP-binding protein [Streptomyces griseoflavus Tu4000]
          Length = 490

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 58/199 (29%), Gaps = 42/199 (21%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLF--FSFPRCLGISRD--------DLLVHSAIEQAVRLI 56
            +   VPD ++    +    QL      P      +         +         A+  +
Sbjct: 123 GWDIAVPDPREVCWRRT---QLTGELPLPAKDTDGKGIDALLRLCNFATAETECLAIAWL 179

Query: 57  --DSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
                PS P     L GP G+GKS     L  I    S   R +   +      +     
Sbjct: 180 IGCLEPSVPVPAPFLTGPQGAGKSTGGRMLTRIIEGMSGDLRRAPKDEENLIAAVAAGWV 239

Query: 111 VLLEDIDLLDFN---------------DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVC 154
             L+++  +  +                  LF   +         LL+T     +  GV 
Sbjct: 240 TALDNLSHMTPDLSDAMCCIVTGAESVKRALFTDGDVFRARYRRPLLLTG----IDVGVI 295

Query: 155 LPDLCSRLKAATVVKISLP 173
            PDL  RL     +++  P
Sbjct: 296 RPDLAERL---LPLRLERP 311


>gi|296108305|ref|YP_003620006.1| ATPase N2B (nucleotide (GTP) binding protein) [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295650207|gb|ADG26054.1| ATPase N2B (nucleotide (GTP) binding protein) [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 360

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 27/122 (22%)

Query: 57  DSWPSW----PSRVVILVGPSGSGKSCLA-----------------NIWSDKSRS--TRF 93
           DSW  W    P + + + GP G GK+ L                  + +  +  +   R 
Sbjct: 41  DSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRL 100

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----LFHIINSIHQYDSSLLMTARTFPV 149
                 L  I  +  K + L   D    +D      L  ++ ++H+Y   L++++ T P 
Sbjct: 101 QGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHRYGVVLVISSNTHPD 160

Query: 150 SW 151
             
Sbjct: 161 EL 162


>gi|256419214|ref|YP_003119867.1| ATPase AAA [Chitinophaga pinensis DSM 2588]
 gi|256034122|gb|ACU57666.1| AAA ATPase central domain protein [Chitinophaga pinensis DSM 2588]
          Length = 419

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 18/121 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSD---------KSRSTRFSNIAKSLDSILIDTRKPVLLED 115
             +IL GP G GK+ +ANI +           + +     + + ++         + +++
Sbjct: 39  PSMILWGPPGVGKTTIANIIAHTLDVPFYTLSAIAAGVKEVREVIEIARKQGYAVLFIDE 98

Query: 116 IDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           I   + +    L        +     L+ A T   S+ V    L SR   + V  +    
Sbjct: 99  IHRFNKSQQDALL----GAVEKGIITLIGATTENPSFEVNSA-LLSR---SQVYVLKPLS 150

Query: 175 D 175
           +
Sbjct: 151 E 151


>gi|226349603|ref|YP_002776717.1| hypothetical protein ROP_pROB01-03660 [Rhodococcus opacus B4]
 gi|226245518|dbj|BAH55865.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 420

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 34/162 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNIAKSLDSILIDTRKP--- 110
           R V+L GP G+GK+  A   + +             +   + +A  L        +    
Sbjct: 197 RAVVLFGPPGTGKTTFARAIASRLGWPFVELFPSRLAAGENGLAAGLGEAFASMGELEHV 256

Query: 111 -VLLEDIDLLDFND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
            V +++++ +               +L   I +  +    LL+ A     +         
Sbjct: 257 VVFIDEVEEVAARRRPGSQSVGVVNELLKSIVNFRERSGRLLVCATNSVRALDDAF---- 312

Query: 160 SRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198
             L+      V+ I  PD +    +  +   + Q+ +   +A
Sbjct: 313 --LRHGRFDYVLPIGAPDSEARHALWERYLGNEQVDVSALVA 352


>gi|206591320|emb|CAQ56932.1| probable transposition helper protein (partial sequence c terminus)
           [Ralstonia solanacearum MolK2]
          Length = 687

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 518 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 572

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 573 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 630

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 631 FTQWATAFAD 640


>gi|207722927|ref|YP_002253360.1| transposase protein [Ralstonia solanacearum MolK2]
 gi|206588112|emb|CAQ18691.1| probable transposase protein [Ralstonia solanacearum MolK2]
          Length = 240

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            ++  I+   +     V+L+GPSG GK+ +A+  + ++          +   +++     
Sbjct: 71  ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 125

Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147
                              +++++I  L F   +  LF   N +       ++++T+   
Sbjct: 126 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 183

Query: 148 PVSWGVCLPD 157
              W     D
Sbjct: 184 FTQWATAFAD 193


>gi|195445293|ref|XP_002070262.1| GK11127 [Drosophila willistoni]
 gi|194166347|gb|EDW81248.1| GK11127 [Drosophila willistoni]
          Length = 389

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G GK+ LA   +  + ++  S +        +     ++ +
Sbjct: 169 PPRGVLLFGPPGCGKTMLAKAVAHHTTASFISVVGSEFVQKYLGEGPRMVRD 220


>gi|154484609|ref|ZP_02027057.1| hypothetical protein EUBVEN_02325 [Eubacterium ventriosum ATCC
           27560]
 gi|149734457|gb|EDM50374.1| hypothetical protein EUBVEN_02325 [Eubacterium ventriosum ATCC
           27560]
          Length = 439

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + ++ + +      A       ++       +++  +    T L
Sbjct: 55  IIFYGPPGTGKTTLAKVIANTTSADFMQLNATVAGKKDMEDVVAKAKQNM-AMSGRKTIL 113

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + V ++    
Sbjct: 114 FVDEIHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNSA-LISR---SIVFELHPLS 169

Query: 175 DDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            + ++ +I++   D+          ID     ++ +        A   V+
Sbjct: 170 VENIKTLILRAVNDKTDGMGIYNGVIDDDAVMFLAEISNGDARTALNAVE 219


>gi|154345946|ref|XP_001568910.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066252|emb|CAM44042.1| putative mitochondrial ATP-dependent zinc metallopeptidase
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 533

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            +L GP G GK+ LA   + ++  + F       D + +      + E       N   L
Sbjct: 97  ALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEMFVGVGARRVRELFAAAKANSPAL 156


>gi|134098618|ref|YP_001104279.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009604|ref|ZP_06567577.1| recombination factor protein RarA [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911241|emb|CAM01354.1| AAA ATPase, central region [Saccharopolyspora erythraea NRRL 2338]
          Length = 453

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 24/141 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRK---------PVL 112
           V+L GP G+GK+ LAN+ S  +     +  A S     + +++ + R+          + 
Sbjct: 66  VLLYGPPGTGKTTLANLVSLATGRRFVALSALSSGVKEVRAVIEEARRRLGRTAEATVLF 125

Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           ++++          L        +  + LL+ A T   S+ V  P L SR   + V+++ 
Sbjct: 126 IDEVHRFSKTQQDALL----GAVEDRTVLLVAATTENPSFSVVAP-LLSR---SLVLQLR 177

Query: 172 LPDDDFLEKVIVKMFAD-RQI 191
              +D + +++ +  AD R +
Sbjct: 178 SHGEDDIRELVRRAVADERGL 198


>gi|91094825|ref|XP_971125.1| PREDICTED: similar to werner helicase interacting protein
           [Tribolium castaneum]
          Length = 494

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 37/168 (22%)

Query: 65  RVVILVGPSGSGKSCLANI-----------------WSDKSRSTRFSNI-AKSLDSILID 106
             ++L GP G GK+ L+ +                  +  +      NI + +       
Sbjct: 129 PNMVLWGPPGCGKTSLSGVIQGICKSNPTKLKFVSLCAATAGVKDVQNIVSAAKLQQKFG 188

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            R  + +++I   +     +F +     +    +L+ A T   S+ V    L SR     
Sbjct: 189 CRTVLFMDEIHRFNKKQQDIFLLH---VEKGDIILVGATTENPSFTVNSA-LLSR---CR 241

Query: 167 VVKISLPDDDFLEKVIV------------KMFADRQIFIDKKLAAYIV 202
           V+ +   D D L +++             K    +   +      ++ 
Sbjct: 242 VIVLQKLDPDCLYQILERGARNFNVEVVDKGARSKGFAVQADALKWLA 289


>gi|56477530|ref|YP_159119.1| ATPase with chaperone activity [Aromatoleum aromaticum EbN1]
 gi|56313573|emb|CAI08218.1| conserved hypothetical protein, predicted ATPase with chaperone
           activity [Aromatoleum aromaticum EbN1]
          Length = 435

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 15/153 (9%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             R + L GP+G+GK+ LA   +           A  +DS +I    P+    I     +
Sbjct: 164 SGRALFLYGPAGAGKTYLAERLALLLDGDIAVPHAILVDSEVIQVFDPL----IHTPVED 219

Query: 123 DTQLFHIINSIHQY------DSSLLMTARTFPVSWGVCLPDLCSRL-KAATVVK----IS 171
           D +   + N +            + +T     +       D  S   +A   VK    + 
Sbjct: 220 DRRPAALDNLMRPDLRWVRCKRPVAITGGELTLRMLDLDYDASSGFYQAPPHVKANNGLF 279

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
           + DD   + V  +   +R I    +   Y+   
Sbjct: 280 VVDDLGRQIVTPEQLMNRWIVPMDRHYDYLALH 312


>gi|23336821|ref|ZP_00121977.1| COG1484: DNA replication protein [Bifidobacterium longum DJO10A]
          Length = 198

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           ++L GP G+GKS LA      +          +   +L                  I   
Sbjct: 54  LVLYGPVGTGKSHLAIAIGRLACERGVPVRFFTATGLLMRLRRAQQENRLDRELASIGKA 113

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + +++++   L  ++     LF II+  ++   S++ T       WG  L D
Sbjct: 114 RLLIIDEFGYLPIDEEGSRLLFQIISDSYET-RSIIYTTNIEFSGWGRVLGD 164


>gi|326571804|gb|EGE21810.1| recombination factor protein RarA [Moraxella catarrhalis BC7]
          Length = 412

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113
             +IL G +G GK+ LA + +D         S ++            D  L      V +
Sbjct: 39  PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98

Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++I   +      L        +     L+ A T   S+ V    L SR     V K+  
Sbjct: 99  DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225
             DD +  +IV+      +   K +    +   ++ S     + ++ ++ +A +
Sbjct: 151 LSDDEIYALIVRAIRQDTLLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAA 204


>gi|296204684|ref|XP_002749432.1| PREDICTED: fidgetin [Callithrix jacchus]
          Length = 759

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 509 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEGE 564

Query: 110 PVL 112
            ++
Sbjct: 565 KII 567


>gi|283769123|ref|ZP_06342028.1| Holliday junction DNA helicase RuvB [Bulleidia extructa W1219]
 gi|283104309|gb|EFC05687.1| Holliday junction DNA helicase RuvB [Bulleidia extructa W1219]
          Length = 337

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ LA+I +++  S        S+           +LE  D+L  ++ 
Sbjct: 55  VLLYGPPGLGKTTLAHILANEMNSKIKVTSGPSIAKAGDLASILSVLEPGDVLFIDEI 112


>gi|242053661|ref|XP_002455976.1| hypothetical protein SORBIDRAFT_03g028368 [Sorghum bicolor]
 gi|241927951|gb|EES01096.1| hypothetical protein SORBIDRAFT_03g028368 [Sorghum bicolor]
          Length = 736

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P R ++L GP G+GK+ LA   ++++ +
Sbjct: 473 PCRGILLFGPPGTGKTMLAKAIANEAGA 500


>gi|222422955|dbj|BAH19462.1| AT1G64110 [Arabidopsis thaliana]
          Length = 769

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ ++  +
Sbjct: 554 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 585


>gi|219112865|ref|XP_002186016.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582866|gb|ACI65486.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 284

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 62  PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 113


>gi|145608348|ref|XP_360648.2| hypothetical protein MGG_03191 [Magnaporthe oryzae 70-15]
 gi|145015827|gb|EDK00317.1| hypothetical protein MGG_03191 [Magnaporthe oryzae 70-15]
          Length = 1040

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           +L GP G+GK+ +A   + +S +      A S++ 
Sbjct: 767 LLYGPPGTGKTLMAKAIARESGANVLEVSAASIND 801


>gi|156717934|ref|NP_001096509.1| nuclear VCP-like [Xenopus (Silurana) tropicalis]
 gi|138519795|gb|AAI35412.1| LOC100125138 protein [Xenopus (Silurana) tropicalis]
          Length = 852

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 42/167 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P R  +L GP G GK+ LA   + +         A  +                +  +  
Sbjct: 291 PPRGFLLHGPPGCGKTLLAQAIAGELDLPMLKVAATEMVSGVSGESEQKLRELFEQAVSS 350

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151
               + +++ID +                 QL   +   NS+      L++ A   P S 
Sbjct: 351 APCILFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNSLAVTAQVLVIGATNRPDSL 410

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195
              L       +A      + + +PD+   ++++  +   R++ + +
Sbjct: 411 DPALR------RAGRFDREICLGIPDEGARKRILQTLC--RKLKLPE 449


>gi|114327774|ref|YP_744931.1| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1]
 gi|114315948|gb|ABI62008.1| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1]
          Length = 642

 Score = 39.4 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 49/207 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 193 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCI 252

Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGV 153
           + +++ID +            ++ +    +N +          +  +L+ A   P     
Sbjct: 253 IFIDEIDAVGRHRGAGLGGGNDERE--QTLNQMLVEMDGFESNEGVILIAATNRPDVLDP 310

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    EK++      R++ +   +   ++ R      
Sbjct: 311 AL------LRPGRFDRQVVVPNPDVAGREKILRVHM--RKVPLASDVDPKVIARGTPGFS 362

Query: 211 FAEKLVDKMDNLAL--SRGMGITRSLA 235
            A  L + ++  AL  +R    T S+A
Sbjct: 363 GA-DLANLVNEAALLAARLSRRTVSMA 388


>gi|330919350|ref|XP_003298576.1| hypothetical protein PTT_09336 [Pyrenophora teres f. teres 0-1]
 gi|311328148|gb|EFQ93325.1| hypothetical protein PTT_09336 [Pyrenophora teres f. teres 0-1]
          Length = 817

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-------LIDTRKPVLLE 114
           W    + L GP G+GKS L    +       +    + +D          +  R  V +E
Sbjct: 308 WRHGYL-LHGPPGTGKSSLITAIASHINIALYVINLQGMDDEDLKECFNRVPPRSVVAIE 366

Query: 115 DIDLLDFN 122
           DID +  +
Sbjct: 367 DIDCVGAD 374


>gi|298712577|emb|CBJ33278.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 446

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 224 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 275


>gi|294660198|ref|NP_852808.2| cell division protease FtsH-like protein [Mycoplasma gallisepticum
           str. R(low)]
 gi|310946906|sp|D3FFN2|FTSH_MYCGH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|284811848|gb|AAP56376.2| cell division protease ftsH-like protein [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930269|gb|ADC30208.1| cell division protease ftsH-like protein [Mycoplasma gallisepticum
           str. R(high)]
          Length = 765

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           R V+L GP G+GK+ LA   + ++    F     + + +L+    
Sbjct: 308 RGVVLYGPPGTGKTLLAKAVAGEAGVPFFQVTGSAFEDMLVGVGA 352


>gi|260776357|ref|ZP_05885252.1| ATPase AAA family [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607580|gb|EEX33845.1| ATPase AAA family [Vibrio coralliilyticus ATCC BAA-450]
          Length = 428

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA + ++ + +      A +     I        E+   L    T L
Sbjct: 34  MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIDKAREN--KLTGRRTIL 91

Query: 127 F----HIINSIHQY 136
           F    H  N   Q 
Sbjct: 92  FVDEVHRFNKSQQD 105


>gi|226471216|emb|CAX70689.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
          Length = 433

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 64/188 (34%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELARSK 267

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                  E+ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACIIFFEEIDAVGGARFDDGLGGENEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + ++K +
Sbjct: 328 DPALVRPGRLDRKVEFGLPDLEGR---THIFKIHA----------------RSMSVEKDI 368

Query: 198 AAYIVQRM 205
              ++ R+
Sbjct: 369 RYELLARL 376


>gi|253990890|ref|YP_003042246.1| ATP-dependent protease ATP-binding subunit ClpX [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782340|emb|CAQ85504.1| ATP-dependent Clp protease ATP-binding subunit clpX [Photorhabdus
           asymbiotica]
          Length = 423

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+    VP ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKELVPHRERSALPT----------PHEIRQHLDDYVIGQETAKKVLAVAVYNH 95

Query: 56  IDSWPSWP--------SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +             ++L+GP+GSGK+ LA   +      R+ ++  ++      T
Sbjct: 96  YKRLRNGDVSNGVELGKSNILLIGPTGSGKTLLAETLA------RYLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|242239684|ref|YP_002987865.1| recombination factor protein RarA [Dickeya dadantii Ech703]
 gi|242131741|gb|ACS86043.1| AAA ATPase central domain protein [Dickeya dadantii Ech703]
          Length = 447

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 36/198 (18%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA +     ++   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAELIGRYGEADVERISAVTSGIKDIREAVERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              D   +E+V+ +   DR+       I +  +    + + +      A  L++ M ++A
Sbjct: 163 KSLDTADIEQVLAQAMVDRERGLGGQHIVLPDETRRLLAELVNGDARRALNLLEMMADMA 222

Query: 224 ---LSRGMGITRSLAAEV 238
                    +T +L   V
Sbjct: 223 EVDADGQRVLTPALLKAV 240


>gi|237746840|ref|ZP_04577320.1| holliday junction DNA helicase B [Oxalobacter formigenes HOxBLS]
 gi|229378191|gb|EEO28282.1| holliday junction DNA helicase B [Oxalobacter formigenes HOxBLS]
          Length = 354

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 33/201 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            +L GP G GK+ LA+I + +            L+           LE  D+L  ++   
Sbjct: 65  TLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERPGDLAAILTNLEANDVLFIDEI-- 122

Query: 127 FH---------IINSIHQYDSSLLMTARTFPVSWGVCLPDLCS----------------- 160
            H         +  ++  Y   +L+     P +  V L DL                   
Sbjct: 123 -HRMSPVVEEILYPALEDYQIDILI--GEGPAARSVKL-DLQPFTLIGATTRAGMLTNPL 178

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM- 219
           R +   V ++   D D L +++ +     +  I +  A  I +R   +   A +L+ ++ 
Sbjct: 179 RDRFGVVARLEFYDIDDLTRIVTRSAMLLKAPIVEDGAREIARRARGTPRIANRLLRRVR 238

Query: 220 DNLALSRGMGITRSLAAEVLK 240
           D   +     ITR +A   LK
Sbjct: 239 DYAEVKGTGEITREMADAALK 259


>gi|281422083|ref|ZP_06253082.1| replication-associated recombination protein A [Prevotella copri
           DSM 18205]
 gi|281403872|gb|EFB34552.1| replication-associated recombination protein A [Prevotella copri
           DSM 18205]
          Length = 424

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 21/191 (10%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI------------LIDTRKPVL 112
            IL GP G GK+ LA I +   K      S +   +  +                   + 
Sbjct: 42  FILWGPPGVGKTTLAQIVAQTIKVPFFTLSAVTSGVKDVREVIERAKSGRFFNSASPILF 101

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +     L+ A T   S+ V  P L SR +   +  + 
Sbjct: 102 IDEIHRFSKSQQDSLL----GAVEKGIVTLIGATTENPSFEVIRP-LLSRCQLYVLKPLE 156

Query: 172 LPD-DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
             D +  L + I +    R+  I  +    +++           +++ +   A S  + I
Sbjct: 157 KADLEGLLHRAITQDVELREKNIKLEETGALLRYSGGDARKLLNILELVVESAGSSEIVI 216

Query: 231 TRSLAAEVLKE 241
           T  +  E L++
Sbjct: 217 TDKMVEEQLQQ 227


>gi|319937217|ref|ZP_08011624.1| ATPase [Coprobacillus sp. 29_1]
 gi|319807583|gb|EFW04176.1| ATPase [Coprobacillus sp. 29_1]
          Length = 442

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 23/151 (15%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT----- 107
            +LI+         +I  GP G GK+ LA I ++ ++S      A +     I       
Sbjct: 41  WQLIEHDQ---ISSMIFWGPPGVGKTTLARIIANCTQSEFIDFSAVTSGIKDIKAVMKQA 97

Query: 108 --------RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159
                   R  V +++I   +      F       +  S +L+ A T   S+ +    L 
Sbjct: 98  QEKQMMGIRTIVFVDEIHRFNKAQQDAFLPY---VEQGSIILIGATTENPSFEINSA-LL 153

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190
           SR     V  +   + + +  ++    +  Q
Sbjct: 154 SR---CKVFVLHGLEIEDILDLLKHALSSEQ 181


>gi|312880490|ref|ZP_07740290.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans
           DSM 12260]
 gi|310783781|gb|EFQ24179.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans
           DSM 12260]
          Length = 624

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +W   P + V+L GP G+GK+ LA   + ++    F         + +      + E
Sbjct: 209 AWGVRPPKGVLLFGPPGTGKTLLARAVAGEAGVPFFRAAGSDFVEMYVGVGASRVRE 265


>gi|307718299|ref|YP_003873831.1| ATPase, AAA family [Spirochaeta thermophila DSM 6192]
 gi|306532024|gb|ADN01558.1| ATPase, AAA family [Spirochaeta thermophila DSM 6192]
          Length = 745

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 30/173 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFND 123
           VI  GP G GK+ LA + ++ ++S   S  A       +       +E            
Sbjct: 56  VIFYGPPGCGKTTLARVIANHTKSAFLSLNAVLSGVQEVRA----AIEKARQEMAYHGRR 111

Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N           +  + +L+ A T    + V    L SR   + + +++
Sbjct: 112 TILFVDEVHRWNKAQQDALLPWVENGTVILIGATTQNPYFEVNSA-LISR---SRIFQLT 167

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
               + L  +  +   D  R      I +D     +++   +         ++
Sbjct: 168 PLTREHLRTIAERALKDPERGYGKYRIIMDDDALEHLITVADGDARTLLSAIE 220


>gi|284931036|gb|ADC30974.1| cell division protease ftsH-like protein [Mycoplasma gallisepticum
           str. F]
          Length = 765

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           R V+L GP G+GK+ LA   + ++    F     + + +L+    
Sbjct: 308 RGVVLYGPPGTGKTLLAKAVAGEAGVPFFQVTGSAFEDMLVGVGA 352


>gi|255731133|ref|XP_002550491.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132448|gb|EER32006.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 698

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 60/199 (30%), Gaps = 48/199 (24%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
              +L G  G GK+ LA I +  SR      +   + AK+L  + +        E+   L
Sbjct: 197 PSFLLWGVPGIGKTSLARIIAKNSRCKFVELSGIDSNAKNLKEVFLQA------ENHKKL 250

Query: 120 DFNDTQLF----HIINSIHQYDSSLLM-------------TARTFPVSWGVCLPDLCSRL 162
               T LF    H  N   Q    LL+             T      +       L SR 
Sbjct: 251 TGQRTILFLDEIHRFNKAVQD---LLLPVIEKGIVTVIGATTENPSFNLNNA---LLSR- 303

Query: 163 KAATVVKISLPD-DDFLEKVIVKMFADRQIF----------IDKKLAAYIVQRMERSLVF 211
                  +   + +  ++ +   +F   +I           + K    YI          
Sbjct: 304 --VHTFVMEPLNTESLIKILTRALFEVNRIRKKLYGFHYISLQKDAYHYIANLSMGDSRV 361

Query: 212 AEKLVDKMDNLALSRGMGI 230
           A  +++ ++    +    I
Sbjct: 362 ALNILETLNAYLSADKFKI 380


>gi|227513090|ref|ZP_03943139.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
           ATCC 11577]
 gi|227083665|gb|EEI18977.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
           ATCC 11577]
          Length = 424

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 16/131 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A          ++   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRVLNAATDTKKDLQVVVEEAKMSGTVVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD      F +   + +  + +L+ A T      +  P + SR     + ++       
Sbjct: 102 RLDKTKQD-FLL--PLLEKGAIILIGATTENPYININ-PAIRSR---TQIFEVHPLSPKD 154

Query: 178 LEKVIVKMFAD 188
           +++ +++   D
Sbjct: 155 IKQAVLRALKD 165


>gi|215259685|gb|ACJ64334.1| 26S proteasome regulatory complex ATPase RPT4 [Culex tarsalis]
          Length = 323

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E        
Sbjct: 103 PPKGCLLYGPPGTGKTSLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 154

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 155 ------MFNYARDHQ 163


>gi|254387536|ref|ZP_05002775.1| ATP-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|294815075|ref|ZP_06773718.1| ATP-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|326443440|ref|ZP_08218174.1| ATP/GTP-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|197701262|gb|EDY47074.1| ATP-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327674|gb|EFG09317.1| ATP-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 491

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 42/199 (21%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLF--FSFPRCLGISRD--------DLLVHSAIEQAVRLI 56
            +   +PD ++    +    QL      P      +         +     +   A+  +
Sbjct: 124 GWDVRIPDPREVCWRRT---QLTGELPLPAKDTNGKGIDLLLRLCNFANAESECLALAWL 180

Query: 57  --DSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
                PS P     L GP G+GKS     L  +    +   R +   +      +     
Sbjct: 181 IGCLEPSVPVPAPFLTGPQGAGKSTGGRMLVRVIEGMTGDLRRAPRDEENLITAVAAGWV 240

Query: 111 VLLEDIDLLDFN---------------DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVC 154
             L+++  L  +                  LF   + +       LL+T     +  GV 
Sbjct: 241 TALDNLSHLPPDLSDLMCCVVTGAESIKRALFTDGDVVRSRYRRPLLLTG----IDVGVI 296

Query: 155 LPDLCSRLKAATVVKISLP 173
            PDL  RL     +++  P
Sbjct: 297 RPDLAERL---LPLRLERP 312


>gi|134095226|ref|YP_001100301.1| recombination factor protein RarA [Herminiimonas arsenicoxydans]
 gi|133739129|emb|CAL62178.1| ATPase, AAA family protein [Herminiimonas arsenicoxydans]
          Length = 437

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 18/148 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            IL GP G GK+ L  + +  + S   +  A       I         ++D    + T L
Sbjct: 50  FILWGPPGVGKTTLGRLAASATDSRFIAISAVLAGVKDIRQAIDEAQAELDNHGRS-TVL 108

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +     L+   T      V    L SR   A V  +    
Sbjct: 109 FVDEIHRFNKAQQDALLPHVESGLLTLVGGTTEHPGLAVNSA-LLSR---AQVYTLEPLS 164

Query: 175 DDFLEKVIVKMF-ADRQIFIDKKLAAYI 201
            D L ++  +     + + +D      +
Sbjct: 165 SDELNQLYERALPHLQGVTLDADALDLL 192


>gi|85058650|ref|YP_454352.1| ATP-dependent protease ATP-binding subunit [Sodalis glossinidius
           str. 'morsitans']
 gi|123519920|sp|Q2NV78|CLPX_SODGM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|84779170|dbj|BAE73947.1| ATP-dependent Clp protease ATP-binding subunit [Sodalis
           glossinidius str. 'morsitans']
          Length = 424

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEKAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDTNNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|57642187|ref|YP_184665.1| proteasome-activating nucleotidase [Thermococcus kodakarensis KOD1]
 gi|73921838|sp|Q5JHS5|PAN_PYRKO RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|57160511|dbj|BAD86441.1| proteasome-activating nucleotidase [Thermococcus kodakarensis KOD1]
          Length = 397

 Score = 39.4 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ +A   ++   +T    +   L    I     ++ E
Sbjct: 171 PPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHE 222


>gi|329121015|ref|ZP_08249646.1| replication-associated recombination protein A [Dialister
           micraerophilus DSM 19965]
 gi|327471177|gb|EGF16631.1| replication-associated recombination protein A [Dialister
           micraerophilus DSM 19965]
          Length = 435

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 19/125 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP------------ 110
             ++L GP G GK+ +A + +   KS   +F+     +  I +   K             
Sbjct: 51  PSLLLFGPPGCGKTTIAKVIASTTKSNFIKFNATENGIKEIRLIAIKAEENLKFYNKKTI 110

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + +++I   + +   +        +  +  L+ A T    + +    L SR++   + ++
Sbjct: 111 LFIDEIHRFNKSQQDVLLPY---TEDGTLTLIGATTENPYFSLNRA-LLSRIRLVRLTEL 166

Query: 171 SLPDD 175
           S+ DD
Sbjct: 167 SI-DD 170


>gi|313891986|ref|ZP_07825587.1| ATPase, AAA family [Dialister microaerophilus UPII 345-E]
 gi|313119629|gb|EFR42820.1| ATPase, AAA family [Dialister microaerophilus UPII 345-E]
          Length = 435

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 19/125 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP------------ 110
             ++L GP G GK+ +A + +   KS   +F+     +  I +   K             
Sbjct: 51  PSLLLFGPPGCGKTTIAKVIASTTKSNFIKFNATENGIKEIRLIAIKAEENLKFYNKRTI 110

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           + +++I   + +   +        +  +  L+ A T    + +    L SR++   + ++
Sbjct: 111 LFIDEIHRFNKSQQDVLLPY---TEDGTLTLIGATTENPYFSLNRA-LLSRIRLVRLTEL 166

Query: 171 SLPDD 175
           S+ DD
Sbjct: 167 SI-DD 170


>gi|313888445|ref|ZP_07822112.1| Holliday junction DNA helicase RuvB [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845474|gb|EFR32868.1| Holliday junction DNA helicase RuvB [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 333

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 23/191 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P    +L GP G GK+ LA I +++           +++           L + D+L  +
Sbjct: 52  PLDHTLLSGPPGLGKTTLAGIIANEMGVNLKVTSGPAIEKQGDLASILTNLNNDDVLFID 111

Query: 123 DTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           +    H +N   +        D +L +     P +  +       RL  A    I     
Sbjct: 112 EI---HRLNKSVEEILYPAMEDHALDIIIGKGPSARSI-------RLDLAPFTLIGA--- 158

Query: 176 DFLEKVIVKMFADR-QIFIDKKLAAY--IVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232
                ++     DR  + +   L     +V+ + RS       +++   L ++R    T 
Sbjct: 159 TTRAGMLTSPLRDRFGVMLKLDLYDTKSLVEIIMRSAKILNVPIEEEGALEIARRSRGTP 218

Query: 233 SLAAEVLKETQ 243
            +A  +LK  +
Sbjct: 219 RIANRLLKRVR 229


>gi|299472669|emb|CBN78321.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 740

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           P R++ ++GPSGSGKS L N+ + +  + R   +  +++   I       L+D D
Sbjct: 67  PGRLLAIMGPSGSGKSSLLNVLTGRVPAARQKRLEGTVEVGKIP------LDDFD 115


>gi|298253850|ref|ZP_06977437.1| ABC-type cobalt transporter, ATPase component [Gardnerella
           vaginalis 5-1]
 gi|297531993|gb|EFH70968.1| ABC-type cobalt transporter, ATPase component [Gardnerella
           vaginalis 5-1]
          Length = 627

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 69  LVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRKPVL-----LEDID- 117
           ++GPSGSGK+ LA+++S       S     S      D+  +            ++DID 
Sbjct: 49  IIGPSGSGKTTLASLFSGAIPHHYSGELLGSVKIAGQDTNNLALTNIACLVGSVIQDIDA 108

Query: 118 ---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                +  D  LF + N    +     + +R       V + DL +R
Sbjct: 109 QMVAANVEDEILFGLENFGVAHSE---IPSRIDEALQIVGISDLRNR 152


>gi|283783094|ref|YP_003373848.1| cobalt ABC transporter, ATP-binding protein [Gardnerella vaginalis
           409-05]
 gi|283441133|gb|ADB13599.1| cobalt ABC transporter, ATP-binding protein [Gardnerella vaginalis
           409-05]
          Length = 627

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 69  LVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRKPVL-----LEDID- 117
           ++GPSGSGK+ LA+++S       S     S      D+  +            ++DID 
Sbjct: 49  IIGPSGSGKTTLASLFSGAIPHHYSGELLGSVKIAGQDTNNLALTNIACLVGSVIQDIDA 108

Query: 118 ---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                +  D  LF + N    +     + +R       V + DL +R
Sbjct: 109 QMVAANVEDEILFGLENFGVAHSE---IPSRIDEALQIVGISDLRNR 152


>gi|297600897|ref|NP_001050084.2| Os03g0344700 [Oryza sativa Japonica Group]
 gi|255674494|dbj|BAF11998.2| Os03g0344700 [Oryza sativa Japonica Group]
          Length = 666

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 45/164 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRK- 109
           P + ++L GP G+GK+ LA   + ++ +              F    K + ++     K 
Sbjct: 398 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSISSKWFGEGEKFVKAVFSLASKI 457

Query: 110 ---PVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144
               + ++++D +            +  + N              +  L++ A       
Sbjct: 458 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 517

Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181
                R  P    V LPD  +R  + +  + K  L DD  LE V
Sbjct: 518 DEAVVRRLPRRLMVNLPDASNRRKILSVILAKEDLADDVDLEAV 561


>gi|300023433|ref|YP_003756044.1| ABC transporter [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525254|gb|ADJ23723.1| ABC transporter related protein [Hyphomicrobium denitrificans
          ATCC 51888]
          Length = 241

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/22 (63%), Positives = 17/22 (77%)

Query: 62 WPSRVVILVGPSGSGKSCLANI 83
          WP + V LVGPSG+GKS L +I
Sbjct: 41 WPGQAVALVGPSGAGKSTLLHI 62


>gi|242032149|ref|XP_002463469.1| hypothetical protein SORBIDRAFT_01g000400 [Sorghum bicolor]
 gi|241917323|gb|EER90467.1| hypothetical protein SORBIDRAFT_01g000400 [Sorghum bicolor]
          Length = 722

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 9/52 (17%)

Query: 40  RDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
             D LV S+   A+         P+ + +++GP+ SGKS L    + +  +T
Sbjct: 116 FSDRLVKSSNGYAL---------PATLTVIMGPARSGKSTLLRAIAGRLSAT 158


>gi|242093492|ref|XP_002437236.1| hypothetical protein SORBIDRAFT_10g023320 [Sorghum bicolor]
 gi|241915459|gb|EER88603.1| hypothetical protein SORBIDRAFT_10g023320 [Sorghum bicolor]
          Length = 419

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 199 VILYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 246


>gi|256088478|ref|XP_002580361.1| 26S protease regulatory subunit [Schistosoma mansoni]
 gi|238665924|emb|CAZ36600.1| 26S protease regulatory subunit, putative [Schistosoma mansoni]
          Length = 436

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 214 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 265


>gi|226313349|ref|YP_002773243.1| hypothetical protein BBR47_37620 [Brevibacillus brevis NBRC 100599]
 gi|226096297|dbj|BAH44739.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 392

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
             ++L GPSG GKS LA   S++ ++  FS       S+   + +   + D+
Sbjct: 146 STILLYGPSGCGKSLLAKATSEECQAHFFSMANTGGRSMYTPSNRQFNIHDL 197


>gi|222634891|gb|EEE65023.1| hypothetical protein OsJ_19991 [Oryza sativa Japonica Group]
          Length = 405

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 26/150 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++          
Sbjct: 165 PARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLV---------- 214

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP---DLCSRLKAATVVKIS----LPDD 175
              LF     +       ++            L    D   RLK+  +++       PDD
Sbjct: 215 -RTLF----MVAVDRQPSVIFMDEIDSVMSARLANENDASRRLKSEFLIQFDGVTSNPDD 269

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
                VIV    ++   +D  +   +V+R+
Sbjct: 270 ----LVIVIGATNKPQELDDAVLRRLVKRI 295


>gi|254441752|ref|ZP_05055245.1| ATP-dependent metallopeptidase HflB subfamily [Octadecabacter
           antarcticus 307]
 gi|198251830|gb|EDY76145.1| ATP-dependent metallopeptidase HflB subfamily [Octadecabacter
           antarcticus 307]
          Length = 628

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 46/205 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 179 ALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 238

Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH------QYDSSLLMTARTFPVSWGVC 154
           + +++ID +            ++ +    +N +       + +  +++ A T      V 
Sbjct: 239 IFIDEIDAVGRARGVGMGGGNDERE--QTLNQLLVEMDGFEANEGVIIIAAT--NRKDVL 294

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
            P L   L+       V +S PD    EK++      R+  +   +   I+ R       
Sbjct: 295 DPAL---LRPGRFDRQVTVSNPDIKGREKILGVHA--RKTPLGPDVDLRIIARGSPGFSG 349

Query: 212 AEKLVDKMDNLALSRGMGITRSLAA 236
           A  L + ++  AL+    I R   A
Sbjct: 350 A-DLANLVNEAALTAAR-IGRRFVA 372


>gi|118486132|gb|ABK94909.1| unknown [Populus trichocarpa]
          Length = 399

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 223


>gi|160331365|ref|XP_001712390.1| prsS7 [Hemiselmis andersenii]
 gi|159765838|gb|ABW98065.1| prsS7 [Hemiselmis andersenii]
          Length = 404

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 45/140 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112
           V+L GP G+GK+ +A   ++++ S     I   L    I     ++              
Sbjct: 183 VMLYGPPGTGKTLVARAVANRTDSCFIKVICSELVQKYIGEGARLVRELFQFAKRKTACI 242

Query: 113 --LEDIDLLDFN------------DTQLFHIINSI----HQYDSSLLMTARTF----PV- 149
              +++D +  +               +  I+N +    ++ ++ +LM         P  
Sbjct: 243 IFFDELDAIGGSRFDDGSGGDNEVQRTMLEIVNQLDGFENRGNTKVLMATNRPDTIDPAL 302

Query: 150 --------SWGVCLPDLCSR 161
                        LPDL SR
Sbjct: 303 TRPGRIDRKIEFGLPDLESR 322


>gi|121711537|ref|XP_001273384.1| sister chromatid cohesion factor (Chl12), putative [Aspergillus
           clavatus NRRL 1]
 gi|119401535|gb|EAW11958.1| sister chromatid cohesion factor (Chl12), putative [Aspergillus
           clavatus NRRL 1]
          Length = 936

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           +V++L GP G GK+ LA++ + ++      
Sbjct: 264 KVLLLCGPPGLGKTTLAHVCAKQAGYEILE 293


>gi|108708096|gb|ABF95891.1| AAA-type ATPase family protein, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 1101

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 45/164 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRK- 109
           P + ++L GP G+GK+ LA   + ++ +              F    K + ++     K 
Sbjct: 833 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSISSKWFGEGEKFVKAVFSLASKI 892

Query: 110 ---PVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144
               + ++++D +            +  + N              +  L++ A       
Sbjct: 893 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 952

Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181
                R  P    V LPD  +R  + +  + K  L DD  LE V
Sbjct: 953 DEAVVRRLPRRLMVNLPDASNRRKILSVILAKEDLADDVDLEAV 996


>gi|23305588|gb|AAN17183.1|AF492466_1 hypothetical protein [Legionella pneumophila 130b]
          Length = 360

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 27/122 (22%)

Query: 57  DSWPSW----PSRVVILVGPSGSGKSCLA-----------------NIWSDKSRS--TRF 93
           DSW  W    P + + + GP G GK+ L                  + +  +  +   R 
Sbjct: 41  DSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRL 100

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----LFHIINSIHQYDSSLLMTARTFPV 149
                 L  I  +  K + L   D    +D      L  ++ ++H Y   L++++ T P 
Sbjct: 101 QGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTHPD 160

Query: 150 SW 151
             
Sbjct: 161 EL 162


>gi|28210102|ref|NP_781046.1| uridine kinase [Clostridium tetani E88]
 gi|28202538|gb|AAO34983.1| uridine kinase [Clostridium tetani E88]
          Length = 552

 Score = 39.4 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----DIDLLD 120
           R++++ GPS SGK+  A   + + R      I   LD   ++       E    D + + 
Sbjct: 287 RLILIAGPSSSGKTTFARRLAIQLRVNGLIPIPIGLDDYFVERDDTPKDENGEYDFESIH 346

Query: 121 FNDTQLF--HIINSIHQYDSSL----LMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             D +LF  H+   +   +  +     +T +       V LP     L    +V+
Sbjct: 347 AVDLELFNEHLTRILKGEEVHIPKYNFITGKRDWNGTKVKLP-----LNGILIVE 396


>gi|332971242|gb|EGK10205.1| hypothetical protein HMPREF9374_2555 [Desmospora sp. 8437]
          Length = 259

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 9/79 (11%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRV------VILVGPSGSGKSCLANIWSDKSRSTR 92
           S D+ +     E+A ++      +          + L GP G GKS L     +      
Sbjct: 72  SFDNFIPREGSEKAYQMAK---DFALNFKQQSAGMYLFGPVGVGKSHLTAAIHNHLSRQG 128

Query: 93  FSNIAKSLDSILIDTRKPV 111
            +++      +    +   
Sbjct: 129 IASVYIDAPQLFGLAKSTF 147


>gi|330790315|ref|XP_003283243.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
 gi|325086924|gb|EGC40307.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
          Length = 828

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD----------------SILID 106
           P R ++L GPSG GK+ LA   + + +   F+  A  +                 S +  
Sbjct: 233 PPRGILLHGPSGCGKTLLAKAIAGELKVPLFAISATEITSGVSGESEARIRQLFSSAIAQ 292

Query: 107 TRKPVLLEDIDLLD 120
               + +++ID + 
Sbjct: 293 APSIIFIDEIDAIA 306


>gi|323456794|gb|EGB12660.1| hypothetical protein AURANDRAFT_18406 [Aureococcus anophagefferens]
          Length = 420

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R ++L GP G+GKS LA   + ++ +  F+  +  L
Sbjct: 158 PWRGILLYGPPGTGKSFLAKAVATEADAQFFAVSSSDL 195


>gi|195386192|ref|XP_002051788.1| GJ10403 [Drosophila virilis]
 gi|194148245|gb|EDW63943.1| GJ10403 [Drosophila virilis]
          Length = 512

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R V+L GP G+GK+ +A   + +SR+T FS    SL S  +   + ++
Sbjct: 271 PPRGVLLFGPPGTGKTLIAKCIASQSRATFFSINPSSLTSKWVGEGEKLV 320


>gi|150865535|ref|XP_001384792.2| AAA ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149386791|gb|ABN66763.2| AAA ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 832

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+ V++  GP G GK+ LA   +++SR+   S
Sbjct: 557 PAGVLM-WGPPGCGKTLLAKAVANESRANFIS 587


>gi|110433433|gb|ABG74398.1| DnaA [Rickettsia australis]
          Length = 199

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--W---------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF 121
           +   W               ++K        +      +  +  + V   +++DI  +  
Sbjct: 123 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|110433445|gb|ABG74404.1| DnaA [Rickettsia akari]
          Length = 199

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--W---------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF 121
           +   W               ++K        +      +  +  + V   +++DI  +  
Sbjct: 123 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|17065032|gb|AAL32670.1| similar to homeobox protein [Arabidopsis thaliana]
          Length = 752

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ ++  +
Sbjct: 554 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 585


>gi|83592434|ref|YP_426186.1| membrane protease FtsH catalytic subunit [Rhodospirillum rubrum
           ATCC 11170]
 gi|83575348|gb|ABC21899.1| membrane protease FtsH catalytic subunit [Rhodospirillum rubrum
           ATCC 11170]
          Length = 640

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 191 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCL 250

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++     +  +L+ A   P      L
Sbjct: 251 IFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDPAL 310

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +S PD    EK++      R+  +   + A ++ R       A
Sbjct: 311 ------LRPGRFDRQVTVSNPDIMGREKILKVHM--RKTPLGPDVDAKVIARGTPGFSGA 362

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 363 -DLSNLVNEAALLAARK 378


>gi|72164728|ref|XP_796230.1| PREDICTED: similar to 26S proteasome regulatory chain 4
           [Strongylocentrotus purpuratus]
 gi|115936872|ref|XP_001175544.1| PREDICTED: similar to 26S proteasome regulatory chain 4
           [Strongylocentrotus purpuratus]
          Length = 443

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 221 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 272


>gi|30678418|ref|NP_171788.2| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 1252

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 47/165 (28%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
            P++ ++L GP G+GK+ LA   + ++ +   +    S+ S                    
Sbjct: 984  PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 1043

Query: 107  TRKPVLLEDIDLL------DFNDTQL------FHIIN----SIHQYDSSLLMTA------ 144
                + ++++D +            +      F +IN         +  L++ A      
Sbjct: 1044 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF-MINWDGLRTKDKERVLVLAATNRPFD 1102

Query: 145  ------RTFPVSWGVCLPDL--CSRLKAATVVKISLPDDDFLEKV 181
                  R  P    V LPD    S++ +  + K  + +D  LE +
Sbjct: 1103 LDEAVIRRLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAI 1147


>gi|73669810|ref|YP_305825.1| cell division control protein 48 AAA family protein [Methanosarcina
           barkeri str. Fusaro]
 gi|72396972|gb|AAZ71245.1| cell division control protein 48 AAA family protein [Methanosarcina
           barkeri str. Fusaro]
          Length = 775

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 47/197 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS----------------TRFSNIAKSLDSILID 106
           P + VIL GP G+GK+ +A   +++S +                     + K  +    D
Sbjct: 231 PPKGVILYGPPGTGKTLIAKAVANESGASFHYIAGPEIVGKFYGESEERLRKIFEEATQD 290

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLM--TARTFPVSWG 152
               + +++ID +                 QL  +++ + +    +++  T R   +   
Sbjct: 291 APSVIFIDEIDSIAPKRENVTGEVERRVVAQLLTLLDGMVERGQVVVIGATNRVDAIDPA 350

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
           +  P    R      + I +PD     +++      R + I++                 
Sbjct: 351 LRRP---GRFD--REIHIGVPDTKDRYEILQ--IHTRGMPIERD----------EETEEI 393

Query: 213 EKLVDKMDNLALSRGMG 229
            K+  + D  AL R   
Sbjct: 394 GKVETEADEAALERERK 410



 Score = 37.1 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           R ++L GP G+GK+ +A   + +S +   S
Sbjct: 533 RGILLYGPPGTGKTLIAKAVAKESNANFIS 562


>gi|56475575|ref|YP_157164.1| transposition helper protein [Aromatoleum aromaticum EbN1]
 gi|56311618|emb|CAI06263.1| transposition helper protein [Aromatoleum aromaticum EbN1]
          Length = 265

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 27/146 (18%)

Query: 31  SFPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC----LAN 82
           + P    +S  D      V  A   A+   DSW       ++L GP G GK+     L +
Sbjct: 67  ALPPDKRLSAFDFAAVPTVSKAHVTALAEGDSWLE-QGANILLFGPPGVGKTHLIAGLGH 125

Query: 83  IWSDKSRSTRFS--------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ--- 125
              ++     F+              ++    +   +D    ++ +D   +  +  +   
Sbjct: 126 ALVERGYRVLFTRTSDLVQRLQAARRDLRLPAELARLDRFDLLICDDFSYVRRDQGETSV 185

Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151
           LF +I +      SL +TA      W
Sbjct: 186 LFELI-AERYERKSLAITANQPFSGW 210


>gi|88803489|ref|ZP_01119014.1| putative AAA family ATPase protein [Polaribacter irgensii 23-P]
 gi|88780501|gb|EAR11681.1| putative AAA family ATPase protein [Polaribacter irgensii 23-P]
          Length = 423

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 24/139 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +IL GP G GK+ LANI +  S                       AK    +      
Sbjct: 40  PSLILWGPPGIGKTTLANIIATTSNRPFYTLSAISSGVKDVRDVIEKAKKSGGLFTAKNP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L        +     L+ A T   S+ V +P L SR     + 
Sbjct: 100 ILFIDEIHRFSKSQQDSLL----GAVEKGWVTLIGATTENPSFEV-IPALLSR---CQIY 151

Query: 169 KISLPDDDFLEKVIVKMFA 187
            ++  D + L  ++ +   
Sbjct: 152 ILNSFDKEELIALLHRAME 170


>gi|85110419|ref|XP_963450.1| hypothetical protein NCU05459 [Neurospora crassa OR74A]
 gi|7801053|emb|CAB91448.1| related to MSP1 protein [Neurospora crassa]
 gi|28925131|gb|EAA34214.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1104

 Score = 39.0 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
           +L GP G+GK+ LA   + +S +      A S++ +
Sbjct: 801 LLYGPPGTGKTLLAKAVAKESGANMLEVSAASINDM 836


>gi|316955508|gb|EFV46580.1| 26S protease regulatory subunit 6A [Trichinella spiralis]
          Length = 154

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           PS+ V+L GP G+GK+ +A   + +++ST        L  + I     ++ +
Sbjct: 45  PSKGVLLYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 96


>gi|297836963|ref|XP_002886363.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332204|gb|EFH62622.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 827

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ ++  +
Sbjct: 552 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 583


>gi|295696965|ref|YP_003590203.1| protein of unknown function DUF815 [Bacillus tusciae DSM 2912]
 gi|295412567|gb|ADG07059.1| protein of unknown function DUF815 [Bacillus tusciae DSM 2912]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 47/211 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------LIDTRKPVLLE 114
           P+  V+L G  G+GKS L      +  +     +  +   +        L+  R    + 
Sbjct: 228 PANNVLLYGDRGTGKSSLVKALVHEFGARGLRLVEVARRDLGDFPLIVRLLRRRPQKFIL 287

Query: 115 DIDLLDFNDTQLF-----------------HIINSIHQYDSSLL---MTARTFPVSWG-- 152
             D L F++ + F                 +++         L+    + R +P      
Sbjct: 288 FFDDLSFSEGETFYKDLKTLLEGGVERRPNNVLLYATSNRRHLVNERFSDRGWPTRGDEE 347

Query: 153 --VCLPD-------LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV- 202
             + L D       L  R      V    PD +   +++  M     + I++     +  
Sbjct: 348 DDLHLEDTVQEKLSLADRF--GLTVSFLSPDQELFLEMVGHMAKRAGLEIEEDSLRRLAL 405

Query: 203 ----QRMERSLVFAEKLVDKMD-NLALSRGM 228
               +   RS   A + VD +   LAL +  
Sbjct: 406 QWERRHNGRSGRSARQFVDHLAGELALEKKK 436


>gi|284165647|ref|YP_003403926.1| gas vesicle protein GvpN [Haloterrigena turkmenica DSM 5511]
 gi|284015302|gb|ADB61253.1| gas vesicle protein GvpN [Haloterrigena turkmenica DSM 5511]
          Length = 347

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-NIWSDKSRS 90
                 ++ +  +   A+      I+ W     + V L+GP+G GK+ LA +  +++ R 
Sbjct: 48  LSAPEDVAPEPFVETDAVASLRDRINGWLE-AEKPVHLIGPTGCGKTALALSAAAERGRP 106

Query: 91  TRFSNIAKSLDSILIDTRKP 110
             + N  +S+D+  +     
Sbjct: 107 VVWINGDESVDTAALVGANA 126


>gi|224080385|ref|XP_002306121.1| predicted protein [Populus trichocarpa]
 gi|222849085|gb|EEE86632.1| predicted protein [Populus trichocarpa]
          Length = 399

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 223


>gi|209544730|ref|YP_002276959.1| two component sigma54 specific Fis family transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532407|gb|ACI52344.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Gluconacetobacter diazotrophicus PAl 5]
          Length = 446

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 30/176 (17%)

Query: 67  VILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSILI-----DTRKPVLLEDI- 116
           V+L GP+G GK+ LA     + + ++      +     D++ +     D R  +L+E+I 
Sbjct: 199 VLLTGPAGVGKTALARRIHRLSAQRAGRLLVLDPRLGEDTVAVRLAGADARDTLLVEEIG 258

Query: 117 DLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLP- 173
           D       +L      +       LL TAR    +    + PDL  RL    VV I+LP 
Sbjct: 259 DWSPALQDRLLA---RVQAGGGARLLATAREGGAALRASVMPDLLCRLD---VVTIALPP 312

Query: 174 ------DDDFLEKVIVKMFADRQI----FIDKKLAAYIVQR-MERSLVFAEKLVDK 218
                 +   L +  +++FA R       +  +    +  R    ++    + +++
Sbjct: 313 LAARGEEIAVLARHFLRLFALRHGVADRTLSPEAEEALAARPWPDNVRALRQAMER 368


>gi|170078004|ref|YP_001734642.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7002]
 gi|238692802|sp|B1XMA0|RUVB_SYNP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|169885673|gb|ACA99386.1| Holliday junction DNA helicase RuvB [Synechococcus sp. PCC 7002]
          Length = 363

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   ++L GP G GK+ ++ I + +         A +L+     +   V LE  D+L  +
Sbjct: 74  PLDHMLLYGPPGLGKTTMSLILAAEMGVNCKITAAPALERPRDISGLLVGLEAGDILFID 133

Query: 123 DTQLFHIINSIHQY 136
           +    H +N + + 
Sbjct: 134 EI---HRLNRMAEE 144


>gi|169823790|ref|YP_001691401.1| DNA replication protein DnaC [Finegoldia magna ATCC 29328]
 gi|167830595|dbj|BAG07511.1| putative DNA replication protein [Finegoldia magna ATCC 29328]
          Length = 325

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 32/122 (26%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS---------------LDSILIDTR 108
           ++ ++L G  G+GK+ L +  + +     FS I  S                +       
Sbjct: 178 AKSLLLYGQVGTGKTYLLSCMAKEIIENGFSVIYLSAMQLLKQLFSIRYQNFNEAPQPEV 237

Query: 109 KPVL-------LEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           + ++       ++D+   +  +T    LF ++N   Q   + +++         + L DL
Sbjct: 238 EDIIYNCDVLMIDDLGTENSTETNISLLFDLLNYRIQNQKTTIIST-------NIDLDDL 290

Query: 159 CS 160
            S
Sbjct: 291 QS 292


>gi|156044192|ref|XP_001588652.1| hypothetical protein SS1G_10199 [Sclerotinia sclerotiorum 1980]
 gi|154694588|gb|EDN94326.1| hypothetical protein SS1G_10199 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 781

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++S++   S
Sbjct: 543 VLLWGPPGCGKTLLAKAVANESKANFIS 570



 Score = 37.4 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R V+L GP G GK+ +AN ++ +   +     A SL +
Sbjct: 223 PPRGVLLHGPPGCGKTMIANAFAAEIGVSFIPISAPSLVA 262


>gi|148695049|gb|EDL26996.1| fidgetin, isoform CRA_b [Mus musculus]
          Length = 771

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  I   +
Sbjct: 521 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAE 576

Query: 110 PVL 112
            ++
Sbjct: 577 KII 579


>gi|167032960|ref|YP_001668191.1| AFG1 family ATPase [Pseudomonas putida GB-1]
 gi|166859448|gb|ABY97855.1| AFG1-family ATPase [Pseudomonas putida GB-1]
          Length = 356

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 23/110 (20%)

Query: 65  RVVILVGPSGSGKS------------------CLANIWSDKSRS----TRFSNIAKSLDS 102
           R + L G  G GKS                     + ++   R         +   +   
Sbjct: 65  RSLYLYGSVGRGKSWLLDGFFQVVPVEAKRRLHFHDFFARLHRGMHHHRALDDALGATLD 124

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151
            L+   + +  ++  + D  D  L   + N++      LL+T+   P   
Sbjct: 125 ELVGGCQVLCFDEFHVHDIGDAMLLTRLFNALFARGVFLLVTSNYAPEGL 174


>gi|17298147|dbj|BAB78495.1| 26S proteasome regulatory particle triple-A ATPase subunit4b [Oryza
           sativa Japonica Group]
          Length = 377

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++          
Sbjct: 150 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYAREH 209

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID +                  L  ++N      +     ++ A   P   
Sbjct: 210 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 269

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L   RL     ++I LP++    +V+    A             I +  E    
Sbjct: 270 DPAL--LRPGRLD--RKIEIPLPNEQSRMEVLKIHAAG------------IAKHGEIDYE 313

Query: 211 FAEKLVDKMDNLALSR 226
              KL +  +   L  
Sbjct: 314 AVVKLAEGFNGADLRN 329


>gi|114320091|ref|YP_741774.1| cytidylate kinase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226485|gb|ABI56284.1| cytidylate kinase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 234

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 20/132 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED---IDLLDF 121
            V+ L GPSGSGK  +A   +++       + A    + L   R+ V L+D   +  L  
Sbjct: 10  PVLTLDGPSGSGKGTIARAVAEQLGWHLLDSGALYRLAALHACRQDVPLDDEGALAALAR 69

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP---DLCSRLKAATVVKISLPDDDFL 178
           +    F       +     ++ A    V+W +      D  SR+ A   V+         
Sbjct: 70  DLPAEF----RQDERGEPHILLAGED-VTWQIRTEQVGDAASRVAAIPAVR--------- 115

Query: 179 EKVIVKMFADRQ 190
           E ++ +  A RQ
Sbjct: 116 EALLERQRAFRQ 127


>gi|238759261|ref|ZP_04620428.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           aldovae ATCC 35236]
 gi|238791432|ref|ZP_04635070.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           intermedia ATCC 29909]
 gi|238702548|gb|EEP95098.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           aldovae ATCC 35236]
 gi|238729048|gb|EEQ20564.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           intermedia ATCC 29909]
          Length = 423

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55
           ++++E+     P ++++  P           P  +    DD ++    A   +  AV   
Sbjct: 46  DIIREEIKEVAPHRERSSLPT----------PHEIRHHLDDYVIGQEPAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|238788009|ref|ZP_04631805.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           frederiksenii ATCC 33641]
 gi|238723957|gb|EEQ15601.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           frederiksenii ATCC 33641]
          Length = 423

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55
           ++++E+     P ++++  P           P  +    DD ++    A   +  AV   
Sbjct: 46  DIIREEIKEVAPHRERSSLPT----------PHEIRHHLDDYVIGQEPAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|326496172|dbj|BAJ90707.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 351

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 36/195 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 98  RGVLLAGPPGTGKTLLAKAVAGEAGIPFFSVSASEFVEMFVGRGAARVRDLFKEAKEAAP 157

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        ++M A   P +    L 
Sbjct: 158 SIIFIDELDAVGGSRGRSFNDERDQTLNQLLTEMDGFDSDVKVIVMAATNRPKALDSALC 217

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V + +PD +   K++        +  D ++   +V  +   LV A  
Sbjct: 218 RPGRFSR-----KVFVGVPDLEGRRKILAVHLRKVPLEEDSEIICDLVANVTPGLVGA-D 271

Query: 215 LVDKMDNLALSRGMG 229
           L + ++  AL     
Sbjct: 272 LANIVNEAALLAARR 286


>gi|310779513|ref|YP_003967846.1| Holliday junction DNA helicase subunit RuvB [Ilyobacter polytropus
           DSM 2926]
 gi|309748836|gb|ADO83498.1| Holliday junction DNA helicase subunit RuvB [Ilyobacter polytropus
           DSM 2926]
          Length = 333

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 75/205 (36%), Gaps = 43/205 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA + + +            LD           LE+ D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLAGVIATEMGVNLKITSGPVLDKAGDLAAILTSLEENDILFIDEI-- 112

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK-----V 181
            H +N+  +      M  R   +  G           +A  ++I LP+   +       +
Sbjct: 113 -HRLNTSVEEILYPAMEDRELDIIIGKGP--------SARSIRIELPNFTLIGATTRAGL 163

Query: 182 IVKMFADRQIFI-------DKKLAAYIVQ---------RME-------RSLVFAE---KL 215
           +     DR   +        ++L   I++         R+E       RS        +L
Sbjct: 164 LSSPLRDRFGVVHRMDYYKSEELIKIILRGGSILGVDVRLEGAEEIAFRSRGTPRISNRL 223

Query: 216 VDKMDNLALSRGMG-ITRSLAAEVL 239
           + ++ + A  RG G +T+ LA E +
Sbjct: 224 LKRVRDYAEIRGDGVVTKPLAKEAM 248


>gi|297809737|ref|XP_002872752.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297318589|gb|EFH49011.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 248

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------DTRKPV 111
            +W    + L GP G+GK+ L    ++    + +    +S+    +        + R  +
Sbjct: 28  RAWKRGYL-LYGPPGTGKTSLVAAIANHMNYSIYDLQIQSVKDDALFRQILTLTENRSIL 86

Query: 112 LLEDIDLLDFN 122
           L+ED+D    +
Sbjct: 87  LIEDLDCSGAD 97


>gi|291565552|dbj|BAI87834.1| AAA ATPase [Aspergillus oryzae]
          Length = 784

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 528 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 567


>gi|256828015|ref|YP_003156743.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577191|gb|ACU88327.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Desulfomicrobium baculatum DSM 4028]
          Length = 416

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 21/121 (17%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV----------RLIDS 58
           D  KND  K   +      P+ +  + DD +V    A   +  AV           L+  
Sbjct: 45  DILKNDNRKEDIDSSDIPLPQEIKAALDDYVVGQDDAKKILSVAVYNHYKRIKYHALVKD 104

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
                   ++L+GP+GSGK+ LA   +      R   +  ++      T    + ED++ 
Sbjct: 105 DVELDKSNILLIGPTGSGKTLLAQTLA------RILKVPFAIADATTLTEAGYVGEDVEN 158

Query: 119 L 119
           +
Sbjct: 159 I 159


>gi|195445207|ref|XP_002070222.1| GK11148 [Drosophila willistoni]
 gi|229559932|sp|B4NBP4|SPAST_DROWI RecName: Full=Spastin
 gi|194166307|gb|EDW81208.1| GK11148 [Drosophila willistoni]
          Length = 777

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 42/190 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++          
Sbjct: 534 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 593

Query: 113 ------LEDIDLL----DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162
                 ++++D L      N+ +      +  +  +  L+     P +     PD   R+
Sbjct: 594 QPSIIFIDEVDSLLSERSSNEHE------ASRRLKTEFLVEFDGLPGN-----PD-GDRI 641

Query: 163 -KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
              A   +    D+  L +   +++       D++    ++ R+       +K    +D 
Sbjct: 642 VVLAATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDT 692

Query: 222 LALSRGMGIT 231
            AL R   IT
Sbjct: 693 EALRRLAKIT 702


>gi|116788974|gb|ABK25069.1| unknown [Picea sitchensis]
          Length = 398

 Score = 39.0 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 171 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 222


>gi|322834045|ref|YP_004214072.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rahnella sp.
           Y9602]
 gi|321169246|gb|ADW74945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rahnella sp.
           Y9602]
          Length = 424

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55
           ++++E+     P ++++  P           P  +    DD ++    A   +  AV   
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRQHLDDYVIGQEPAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|315608969|ref|ZP_07883941.1| AAA family ATPase [Prevotella buccae ATCC 33574]
 gi|315249349|gb|EFU29366.1| AAA family ATPase [Prevotella buccae ATCC 33574]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 42/224 (18%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLD 101
           LV        R+I+          IL GP G GK+ LA I +++  +     S +   + 
Sbjct: 22  LVSPG-AVLRRMIE---GGRISSFILWGPPGVGKTTLAQIIANRLKTPFYTLSAVTSGVK 77

Query: 102 SI-----------LIDTRKPVL-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFP 148
            +             D+  P+L +++I     +    L        +     L+ A T  
Sbjct: 78  DVREVIERAGRNRFFDSLSPILFIDEIHRFSKSQQDSLL----GAVEKGVVTLIGATTEN 133

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM------FADRQIFI--DKKLAAY 200
            S+ V  P L SR     +  +   + + L +++ +          R I +     L  Y
Sbjct: 134 PSFEVIRP-LLSR---CQLYVLKPLEKEDLLRLLHRAVTEDTELRKRDIRLTQTDALLRY 189

Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                  S   A KL++ ++ +  + G   T  +   +++E  Q
Sbjct: 190 -------SGGDARKLLNILELVVEACGDAPTVEITDRLVEERLQ 226


>gi|302519064|ref|ZP_07271406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB78]
 gi|318060126|ref|ZP_07978849.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp.
           SA3_actG]
 gi|318076384|ref|ZP_07983716.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp.
           SA3_actF]
 gi|333027109|ref|ZP_08455173.1| putative ATP-dependent protease ATP-binding subunit ClpX
           [Streptomyces sp. Tu6071]
 gi|302427959|gb|EFK99774.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB78]
 gi|332746961|gb|EGJ77402.1| putative ATP-dependent protease ATP-binding subunit ClpX
           [Streptomyces sp. Tu6071]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 118 ILLLGPTGSGKTHLAQTLA------RMLNVPFAIADATALTEAGYVGEDVENI 164


>gi|226324326|ref|ZP_03799844.1| hypothetical protein COPCOM_02107 [Coprococcus comes ATCC 27758]
 gi|225206774|gb|EEG89128.1| hypothetical protein COPCOM_02107 [Coprococcus comes ATCC 27758]
          Length = 715

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 44/140 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + +++   FS    +   + +                     
Sbjct: 255 ALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSAFVEMYVGVGASRVRDLFKQAQQMAPCI 314

Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
           + +++ID +          ND       QL   ++        LL+ A   P      L 
Sbjct: 315 IFIDEIDAIGKSRDSQLGGNDEREQTLNQLLAEMDGFDSNKGLLLLAATNRPEILDPALL 374

Query: 156 -------------PDLCSRL 162
                        PDL  R+
Sbjct: 375 RPGRFDRRIIVDKPDLKGRI 394


>gi|224105337|ref|XP_002313775.1| predicted protein [Populus trichocarpa]
 gi|222850183|gb|EEE87730.1| predicted protein [Populus trichocarpa]
          Length = 392

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 165 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 216


>gi|167630672|ref|YP_001681171.1| cell division cycle protein 48 [Heliobacterium modesticaldum Ice1]
 gi|167593412|gb|ABZ85160.1| cell division cycle protein 48 [Heliobacterium modesticaldum Ice1]
          Length = 580

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G GK+ LA   +++  +T F+
Sbjct: 341 PPKGVLLYGPPGCGKTLLAQAVANEVEATFFA 372


>gi|326498051|dbj|BAJ94888.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 734

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 38  ISRDDLLVHSAIEQA-----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
           +S +DL V +A  +A     +R +  +   P  V+ ++GPSG GKS L +  + +  
Sbjct: 110 LSWEDLSVSAAGGKAGRVPILRGLSGYAR-PGEVLAIMGPSGCGKSTLLDALAGRLG 165


>gi|325846491|ref|ZP_08169406.1| Holliday junction DNA helicase RuvB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481249|gb|EGC84290.1| Holliday junction DNA helicase RuvB [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 279

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ L+NI +++           +++           L+  D+L  ++   
Sbjct: 1   MLLQGPPGLGKTTLSNIIANELGVNIRITSGPAIERPSDLASILTNLDKGDVLFIDEI-- 58

Query: 127 FHIINSIHQY 136
            H IN   + 
Sbjct: 59  -HRINRSVEE 67


>gi|320095492|ref|ZP_08027162.1| cell division protein FtsH [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977577|gb|EFW09250.1| cell division protein FtsH [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 687

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++ +  FS        + +      + +  D    N  
Sbjct: 211 RGVLLYGPPGTGKTLLAKAVAGEAHAPFFSISGSEFMELYVGVGASRVRDLFDRAKKNAP 270

Query: 125 QL 126
            +
Sbjct: 271 AI 272


>gi|301122931|ref|XP_002909192.1| 26S protease regulatory subunit 8 [Phytophthora infestans T30-4]
 gi|262099954|gb|EEY58006.1| 26S protease regulatory subunit 8 [Phytophthora infestans T30-4]
          Length = 401

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRE 229


>gi|257456871|ref|ZP_05622052.1| recombination factor protein RarA [Treponema vincentii ATCC 35580]
 gi|257445580|gb|EEV20642.1| recombination factor protein RarA [Treponema vincentii ATCC 35580]
          Length = 751

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 25/171 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           VI  GP G+GK+ LA + ++ ++S   S  A       I        E    L    T L
Sbjct: 54  VIFFGPPGTGKTTLAQVIANHTKSNFLSLNAVLAGVQQIRDAIASA-EQYKKLYGKPTIL 112

Query: 127 F----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           F    H  N   Q        + +++    T    +      L SR   + V ++    D
Sbjct: 113 FVDEVHRWNRAQQDALLPWVENGTVIFIGATTENPFFEVNKALVSR---SRVFQLKALTD 169

Query: 176 DFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
             L +   +   D  R      +        ++   +E +   A  L++ +
Sbjct: 170 ADLYRTAERCLRDTERGYGKWKVSFTDGALEHL---IETAAGDARSLLNAL 217


>gi|225684762|gb|EEH23046.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb03]
          Length = 924

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 653 PGLLLYGPPGTGKTMLAKAVARQSGATVLE 682


>gi|223994953|ref|XP_002287160.1| 26S proteasome ATPase regulatory subunit 6 [Thalassiosira
           pseudonana CCMP1335]
 gi|220976276|gb|EED94603.1| 26S proteasome ATPase regulatory subunit 6 [Thalassiosira
           pseudonana CCMP1335]
          Length = 404

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRE 233


>gi|239815682|ref|YP_002944592.1| IstB domain protein ATP-binding protein [Variovorax paradoxus S110]
 gi|239802259|gb|ACS19326.1| IstB domain protein ATP-binding protein [Variovorax paradoxus S110]
          Length = 267

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 30/150 (20%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
            F F            V  A   A+   D W +    ++   GP G GK+ L        
Sbjct: 83  SFDFDAVPA-------VSKAHVTALAEADGWLAQGHNLLA-FGPPGVGKTHLIAGIGHAL 134

Query: 89  RSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDTQ---LF 127
               +  +      ++                  +D    ++L+D+     +  +   LF
Sbjct: 135 IDHGYKVLFVRTSELVQRLQAARRDLRLPNELAKLDRFDLIILDDLSYARRDQAETSVLF 194

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +I +      S+ +TA     +W    PD
Sbjct: 195 ELI-AERYERKSIAITANAPFSAWDEVFPD 223


>gi|212212079|ref|YP_002303015.1| Holliday junction DNA helicase RuvB [Coxiella burnetii CbuG_Q212]
 gi|226698773|sp|B6IYU2|RUVB_COXB2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|212010489|gb|ACJ17870.1| holliday junction DNA helicase [Coxiella burnetii CbuG_Q212]
          Length = 351

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           D  +  +        +D         V++ GP G GK+ LA+I + + ++         L
Sbjct: 44  DIFIRAATNR--REALDH--------VLIFGPPGLGKTTLAHIIAHEMQAGLKQTSGPVL 93

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136
           +           LE  D+L  ++    H +N   + 
Sbjct: 94  EKAGDLAALLTNLEPHDVLFIDEI---HRLNPAIEE 126


>gi|209882379|ref|XP_002142626.1| MIT domain-containing protein [Cryptosporidium muris RN66]
 gi|209558232|gb|EEA08277.1| MIT domain-containing protein [Cryptosporidium muris RN66]
          Length = 434

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 36/171 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + ++L GP G+GK+ LA   + +   T  +  +  L                D     
Sbjct: 148 PWKGILLYGPPGTGKTYLAKACATELNGTFLTLSSADLTSKWQGESEKLIKSLFDIAREK 207

Query: 107 TRKPVLLEDIDLLDF--NDTQ-----------LFHI--INS-IHQYDSSLLMTARTFPVS 150
               + ++++D L    ND +           L  +  INS I   + S+L+   T    
Sbjct: 208 APSIIFIDEVDSLCSSRNDQENESSRRIKTEFLVQMDGINSGILDNNKSILVLGATNVP- 266

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           W +   D+  R +    + I LPD    +++I++   D    +     +YI
Sbjct: 267 WDL---DIAIRRRFERRIYIPLPDYSARKQIILQGLKDTNHNLTDDDISYI 314


>gi|295838902|ref|ZP_06825835.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB74]
 gi|197695454|gb|EDY42387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces
           sp. SPB74]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 118 ILLLGPTGSGKTHLAQTLA------RMLNVPFAIADATALTEAGYVGEDVENI 164


>gi|156084264|ref|XP_001609615.1| ATP-dependent metalloprotease FtsH family protein [Babesia bovis]
 gi|154796867|gb|EDO06047.1| ATP-dependent metalloprotease FtsH family protein [Babesia bovis]
          Length = 706

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           ++L GP G+GK+ LA   + ++            + + +    
Sbjct: 270 ILLSGPPGTGKTLLARAIAGEAGVPFIQASGSEFEEMFVGVGA 312


>gi|145499016|ref|XP_001435494.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402627|emb|CAK68097.1| unnamed protein product [Paramecium tetraurelia]
          Length = 443

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 47  SAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           SA+++AV L   +P +      P + +++ GP G+GK+ LA   + ++  T FS  +  L
Sbjct: 153 SALQEAVLLPIKFPDFFEGARTPWKGILMYGPPGTGKTYLAKACATEAEGTFFSVSSADL 212


>gi|123966164|ref|YP_001011245.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9515]
 gi|123200530|gb|ABM72138.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9515]
          Length = 584

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 45/152 (29%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GP G+GK+ LA   + +S     S  A     + +                     
Sbjct: 171 VLLIGPPGTGKTLLAKAIAGESGVPFLSIAASEFVELFVGVGASRVRDLFVKAKEKSPCI 230

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +           ND       QL   ++        +++ A   P       
Sbjct: 231 IFIDEIDSIGRQRGSGIGGGNDEREQTLNQLLTELDGFSDNSGIIVIAATNRPDILDSAL 290

Query: 152 ----------GVCLPDLCSRLKAATVVKISLP 173
                      V LPDL  R K  +V  +S P
Sbjct: 291 LRPGRFDRKIEVMLPDLDGRKKILSVHSLSKP 322


>gi|110433407|gb|ABG74385.1| DnaA [Rickettsia aeschlimannii]
          Length = 199

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDF 121
           +   W  K  +     I  S +  +    K                   ++++DI  +  
Sbjct: 123 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|110433431|gb|ABG74397.1| DnaA [Rickettsia japonica]
 gi|110433437|gb|ABG74400.1| DnaA [Rickettsia felis]
          Length = 199

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDF 121
           +   W  K  +     I  S +  +    K                   ++++DI  +  
Sbjct: 123 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|110433411|gb|ABG74387.1| DnaA [Rickettsia sp. Bar29]
          Length = 199

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDF 121
           +   W  K  +     I  S +  +    K                   ++++DI  +  
Sbjct: 123 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|110433405|gb|ABG74384.1| DnaA [Rickettsia honei]
          Length = 199

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDF 121
           +   W  K  +     I  S +  +    K                   ++++DI  +  
Sbjct: 123 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|110433427|gb|ABG74395.1| DnaA [Rickettsia rhipicephali]
          Length = 199

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDF 121
           +   W  K  +     I  S +  +    K                   ++++DI  +  
Sbjct: 123 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|13235412|emb|CAC33612.1| DnaD protein [Rickettsia montanensis]
          Length = 255

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDF 121
           +   W  K  +     I  S +  +    K                   ++++DI  +  
Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 239 KDSTQEEFFHTFN 251


>gi|21227108|ref|NP_633030.1| proteasome-activating nucleotidase [Methanosarcina mazei Go1]
 gi|20905437|gb|AAM30702.1| 26S proteasome regulatory subunit RPT2/S4 [Methanosarcina mazei
           Go1]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L G  G+GK+ LA   + ++ +T    +   L    I     ++ E
Sbjct: 212 PPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVRE 263


>gi|19113597|ref|NP_596805.1| 19S proteasome regulatory subunit Rpt1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|24638136|sp|O42931|PRS7_SCHPO RecName: Full=26S protease regulatory subunit 7 homolog
 gi|6681706|emb|CAA16915.2| 19S proteasome regulatory subunit Rpt1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 438

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 212 PPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 263


>gi|17231134|ref|NP_487682.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17132775|dbj|BAB75341.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 628

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 47/205 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 328

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD     +V+     ++++     L   I +R       A
Sbjct: 329 ------LRPGRFDRQVTVDAPDIKGRLEVLQVHARNKKLDPSVSL-EAIARRTP-GFTGA 380

Query: 213 EKLVDKMDNLAL--SRGMG--ITRS 233
             L + ++  A+  +R     IT S
Sbjct: 381 -DLANLLNEAAILTARRRKEGITLS 404


>gi|89095731|ref|ZP_01168625.1| transposase (23) [Bacillus sp. NRRL B-14911]
 gi|89089477|gb|EAR68584.1| transposase (23) [Bacillus sp. NRRL B-14911]
          Length = 257

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 26/121 (21%)

Query: 61  SWPSRVVILV--GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104
           SW      L+  GP+G GK+ L+      +    +     S+D ++              
Sbjct: 96  SWVDEFYTLIMMGPTGVGKTHLSTALGIHAIERGYQVSFISMDRLIYVLKSREYISKSKT 155

Query: 105 ----IDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQ--YDSSLLMTARTFPVSWGVCLP 156
               I     ++++D+  + +   D  LF     I++    ++ ++T+   P  WG  L 
Sbjct: 156 RYNRIVKSDLIIIDDVMYMAYEPQDAHLF--FQFIYEMYDKAAFILTSNKGPGEWGKFLG 213

Query: 157 D 157
           D
Sbjct: 214 D 214


>gi|108804163|ref|YP_644100.1| Holliday junction DNA helicase RuvB [Rubrobacter xylanophilus DSM
           9941]
 gi|122976014|sp|Q1AWE0|RUVB_RUBXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|108765406|gb|ABG04288.1| Holliday junction DNA helicase subunit RuvB [Rubrobacter
           xylanophilus DSM 9941]
          Length = 355

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   ++L GP G GK+ L  I + +           SL+           LE+ D L  +
Sbjct: 73  PLDHMLLAGPPGLGKTSLCRILAAEMGVQLHPTSGPSLERAGDMAAILTSLEEGDFLFID 132

Query: 123 DTQLFHIINSIHQY 136
           +    H +N   + 
Sbjct: 133 EI---HRLNRQIEE 143


>gi|322786219|gb|EFZ12823.1| hypothetical protein SINV_00013 [Solenopsis invicta]
          Length = 431

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 26/118 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKS------LDSILIDTRKPVLL 113
             +I  GP G GK+ L NI +       S +    N++ +      +   + + +  + L
Sbjct: 75  PSMIFWGPPGCGKTSLTNIIATLSKKLTSNNVHIVNLSAANSGVKNIRDAVTEAKNKLKL 134

Query: 114 EDIDLLDFNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSR 161
            D   + F D    H  N +         +  +  L+  T      S     P L SR
Sbjct: 135 SDCKTIVFMDEI--HCFNKLQQDIFLPHVEAGTFTLIGCTTENPSYSLN---PALLSR 187


>gi|321476819|gb|EFX87779.1| hypothetical protein DAPPUDRAFT_306388 [Daphnia pulex]
          Length = 442

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 220 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 271


>gi|319442402|ref|ZP_07991558.1| cell division protein [Corynebacterium variabile DSM 44702]
          Length = 821

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 45/199 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    ++        + +                   
Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEMFVGVGASRVRDLFKTAKENSP 260

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     +  +LM A   P     
Sbjct: 261 CIIFVDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFDDREGVILMAATNRPDILDP 320

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR-MERSL 209
            L      L+       + +  PD    E+++     ++ +  D  L + + +R +  S 
Sbjct: 321 AL------LRPGRFDRQIPVGNPDLAGREQILRVHAKNKPLAPDVDLKS-LAKRTVGMSG 373

Query: 210 VFAEKLVDKMDNLALSRGM 228
                +   ++  AL    
Sbjct: 374 ADLANV---LNEAALLTAR 389


>gi|297809901|ref|XP_002872834.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297318671|gb|EFH49093.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1258

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 47/165 (28%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
            P++ ++L GP G+GK+ LA   + ++ +   +    S+ S                    
Sbjct: 990  PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 1049

Query: 107  TRKPVLLEDIDLL------DFNDTQL------FHIIN----SIHQYDSSLLMTA------ 144
                + ++++D +            +      F +IN         +  L++ A      
Sbjct: 1050 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF-MINWDGLRTKDRERVLVLAATNRPFD 1108

Query: 145  ------RTFPVSWGVCLPDL--CSRLKAATVVKISLPDDDFLEKV 181
                  R  P    V LPD    S++ +  + K  +  D  LE +
Sbjct: 1109 LDEAVIRRLPRRLMVNLPDATNRSKILSVILAKEEIAPDVDLEAI 1153


>gi|268637492|ref|XP_629167.2| ATP-dependent metalloprotease [Dictyostelium discoideum AX4]
 gi|256012808|gb|EAL60761.2| ATP-dependent metalloprotease [Dictyostelium discoideum AX4]
          Length = 767

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 14/71 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L G  G+GK+ LA   + ++  +       S D   +      + E            
Sbjct: 336 VLLSGEPGTGKTLLARAIAGEAGVSFLYTTGSSFDEKYVGVGSRRVRE------------ 383

Query: 127 FHIINSIHQYD 137
             + N+  +  
Sbjct: 384 --LFNAAREKQ 392


>gi|254172798|ref|ZP_04879472.1| replication factor C large subunit [Thermococcus sp. AM4]
 gi|214032954|gb|EEB73782.1| replication factor C large subunit [Thermococcus sp. AM4]
          Length = 498

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 29/185 (15%)

Query: 48  AIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS---------- 94
           AIEQ    I++W          +IL GP G GK+      +++                 
Sbjct: 23  AIEQVRAWIEAWLHGNPPKKKALILAGPPGVGKTTTVYALANEYGFEVIELNASDERTYE 82

Query: 95  -----NIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFP 148
                  A     IL   RK + L++ D ++ +   ++  +I+        ++M+A    
Sbjct: 83  KIERYVQAAYTMDILGKRRKLIFLDEADNIEPSGAREIAKLIDRAKN---PIIMSAN--- 136

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
             W V    + +R   A +V+        + K +V++       + K++   I +R    
Sbjct: 137 HYWEVPRE-IRNR---ALIVQYKRLTQRDIIKALVRILKREGKTVPKEILYEIARRANGD 192

Query: 209 LVFAE 213
           L  A 
Sbjct: 193 LRAAI 197


>gi|260831244|ref|XP_002610569.1| hypothetical protein BRAFLDRAFT_185502 [Branchiostoma floridae]
 gi|229295936|gb|EEN66579.1| hypothetical protein BRAFLDRAFT_185502 [Branchiostoma floridae]
          Length = 188

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S +T F+  A +L S
Sbjct: 120 PARGLLLFGPPGNGKTMLAKAVASESNATFFNISASTLTS 159


>gi|254166710|ref|ZP_04873564.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
 gi|289596184|ref|YP_003482880.1| AAA ATPase central domain protein [Aciduliprofundum boonei T469]
 gi|197624320|gb|EDY36881.1| ATPase, AAA family protein [Aciduliprofundum boonei T469]
 gi|289533971|gb|ADD08318.1| AAA ATPase central domain protein [Aciduliprofundum boonei T469]
          Length = 437

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 78/237 (32%), Gaps = 55/237 (23%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDSW-PSW-----PSRVVILVGPSGSGKSCLANIWSDK 87
                 RD  +V     QA+  I  W   W       + +ILVG  G GK+  A   +++
Sbjct: 9   YRPKRLRD--IVG--NTQAINEILRWAEEWEAGKPSYKALILVGKPGCGKTTTARALANE 64

Query: 88  SRSTRFSNIAK-----------SLDSILIDT--------------RKPVLLEDIDLL--- 119
                    A            +L   + +T              RK ++ ++ D L   
Sbjct: 65  MGWGVIELNASDVRNEEKIKQIALRGAIYETFTDDGKFISTRKGGRKLIIFDEADNLYEG 124

Query: 120 --DFNDTQLFHIINSIHQYDSSLLMTA----RTFPVSWGVCLPDLCSRLKAATVVKISLP 173
             D +      I+ +I      +++           +WG  L         A VVK    
Sbjct: 125 VKDGDRGGKKAIVETIKASKQPIILIGNDYYSITGGTWGKVLK------SVAKVVKFRAV 178

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
           +   + KV+ ++ A   I    ++  YI     +S       ++  D  A++ G  +
Sbjct: 179 NRAQIVKVLRRICAAEGIKCQDEVLKYIA---GKSGGDLRAAIN--DLQAIAEGKKV 230


>gi|195108363|ref|XP_001998762.1| GI24145 [Drosophila mojavensis]
 gi|229559927|sp|B4K799|SPAST_DROMO RecName: Full=Spastin
 gi|193915356|gb|EDW14223.1| GI24145 [Drosophila mojavensis]
          Length = 765

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++
Sbjct: 522 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLV 571


>gi|19075513|ref|NP_588013.1| mitochondrial outer membrane ATPase Msp1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74698334|sp|Q9P7J5|YJNA_SCHPO RecName: Full=Uncharacterized AAA domain-containing protein
           C24B10.10c
 gi|7160255|emb|CAB76219.1| mitochondrial outer membrane ATPase Msp1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 355

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L GP G GK+ LA   + +S++T  +
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQSQATFIN 155


>gi|25009667|gb|AAN71010.1| AT01057p [Drosophila melanogaster]
 gi|25009874|gb|AAN71106.1| AT25963p [Drosophila melanogaster]
          Length = 758

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++
Sbjct: 515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLV 564


>gi|58616346|ref|YP_195476.1| transposition helper protein [Azoarcus sp. EbN1]
 gi|56315808|emb|CAI10452.1| transposition helper protein [Aromatoleum aromaticum EbN1]
          Length = 265

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 27/145 (18%)

Query: 32  FPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANI 83
            P    +S  D      V  A   A+   DSW       ++L GP G GK+     L + 
Sbjct: 68  LPPDKRLSAFDFAAVPTVSKAHVTALAEGDSWLE-QGANILLFGPPGVGKTHLIASLGHA 126

Query: 84  WSDKSRSTRFS--------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---L 126
             ++     F+              ++    +   +D    ++ +D   +  +  +   L
Sbjct: 127 LVERGYRVLFTRTSDLVQRLQAARRDLRLPAELAKLDRFDLLICDDFSYVRRDQGETSVL 186

Query: 127 FHIINSIHQYDSSLLMTARTFPVSW 151
           F +I +      SL +TA      W
Sbjct: 187 FELI-AERYERKSLAITANQPFSGW 210


>gi|38234566|ref|NP_940333.1| cell division protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38200829|emb|CAE50533.1| Cell division protein [Corynebacterium diphtheriae]
          Length = 824

 Score = 39.0 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 57/210 (27%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 204 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQARENSP 263

Query: 111 --VLLEDIDLLDFN------------DTQLFHIINSIH-------QYDSSLLMTARTFPV 149
             + +++ID +               +  L    N +          +  ++M A   P 
Sbjct: 264 CIIFIDEIDAVGRQRGSGMGGGHDEREQTL----NQMLVEMDGFGDREGVIIMAATNRPD 319

Query: 150 SWGVCL--------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFI 193
                L              PDL  R +   V     P   D  +  +  +        +
Sbjct: 320 ILDPALLRPGRFDRQIPVTNPDLKGREQILRVHAKGKPFAKDADITALARRTAGMSGADL 379

Query: 194 DKKL--AAYIVQRMERSLVFAEKLVDKMDN 221
              L  AA +  R+  +++ A+ L +  D 
Sbjct: 380 ANVLNEAALLTARIGGNVITADALEEATDR 409


>gi|332189371|gb|AEE27492.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
          Length = 1246

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 47/165 (28%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
            P++ ++L GP G+GK+ LA   + ++ +   +    S+ S                    
Sbjct: 978  PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 1037

Query: 107  TRKPVLLEDIDLL------DFNDTQL------FHIIN----SIHQYDSSLLMTA------ 144
                + ++++D +            +      F +IN         +  L++ A      
Sbjct: 1038 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF-MINWDGLRTKDKERVLVLAATNRPFD 1096

Query: 145  ------RTFPVSWGVCLPDL--CSRLKAATVVKISLPDDDFLEKV 181
                  R  P    V LPD    S++ +  + K  + +D  LE +
Sbjct: 1097 LDEAVIRRLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAI 1141


>gi|326491233|dbj|BAK05716.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 939

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 56  IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +D+ P    +V++L GP+G GK+ LA++ + K        I  S D     + +P +L+
Sbjct: 316 VDNAPE--QKVLLLCGPAGLGKTTLAHV-AAKHCGYHVVEINAS-DDRSASSIEPKILD 370


>gi|325192426|emb|CCA26865.1| ATPase putative [Albugo laibachii Nc14]
          Length = 691

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P   +IL GP G+GK+ LA   +  +  +  S  A  L
Sbjct: 465 PPSGMILYGPPGTGKTMLAKAAATANGCSLLSVSASDL 502


>gi|316978544|gb|EFV61519.1| 26S protease regulatory subunit S10B [Trichinella spiralis]
          Length = 452

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ ++    I     ++ E        
Sbjct: 173 PPKGCLLYGPPGTGKTLLARAVASQLECNFLKVVSSAIVDKYIGESARMIRE-------- 224

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 225 ------MFNYARDHQ 233


>gi|302770781|ref|XP_002968809.1| ATP-binding cassette transporter [Selaginella moellendorffii]
 gi|300163314|gb|EFJ29925.1| ATP-binding cassette transporter [Selaginella moellendorffii]
          Length = 700

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 29  FFSFPRCLGISRDDLLVHSAIE--QAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIW 84
             +      ++  DL V ++    +   L+     +  P  +  ++GPSGSGKS L +  
Sbjct: 39  PEAMDVSARLAWRDLFVTASNARGEVQVLLHRLSGYAEPGNITAIMGPSGSGKSTLLDTL 98

Query: 85  SDK 87
           + +
Sbjct: 99  AGR 101


>gi|298675870|ref|YP_003727620.1| ABC transporter-like protein [Methanohalobium evestigatum Z-7303]
 gi|298288858|gb|ADI74824.1| ABC transporter related protein [Methanohalobium evestigatum
           Z-7303]
          Length = 252

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 30/128 (23%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
           +L GP+GSGKS L               I    D  +++ R     EDI  L  ++    
Sbjct: 35  VLFGPNGSGKSALLR------------AIMGFGDYKVVEGRILFNGEDITNLSVDERA-- 80

Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVKMF 186
                  +    +++  +  P   GV    L S +KA   +     D D   E + +K F
Sbjct: 81  -------EKGLGIML--QRPPNMTGVK---LSSLIKA---IAKENMDIDKVAEDLDMKRF 125

Query: 187 ADRQIFID 194
            DR+I + 
Sbjct: 126 MDREINVG 133


>gi|261839269|gb|ACX99034.1| recombination factor protein RarA [Helicobacter pylori 52]
          Length = 391

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 20/164 (12%)

Query: 70  VGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLEDIDLL 119
            GP G GK+ LA I +         F+     L+ + +          +  V +++   L
Sbjct: 43  YGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRL 102

Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179
           +    +    I    + D +L++ A T   ++ +    + SR   + + +++      L+
Sbjct: 103 NKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLKKSDLD 155

Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           K+ +K     +  I+     Y++     S   A  L++ +D  A
Sbjct: 156 KLCIKALTLLKKQIEPNAKTYLLNN---SAGDARALLNLLDLSA 196


>gi|189194753|ref|XP_001933715.1| vacuolar sorting ATPase Vps4 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979279|gb|EDU45905.1| vacuolar sorting ATPase Vps4 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 158 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 195


>gi|154305492|ref|XP_001553148.1| hypothetical protein BC1G_08515 [Botryotinia fuckeliana B05.10]
 gi|150853302|gb|EDN28494.1| hypothetical protein BC1G_08515 [Botryotinia fuckeliana B05.10]
          Length = 778

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++S++   S
Sbjct: 540 VLLWGPPGCGKTLLAKAVANESKANFIS 567



 Score = 37.4 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R V+L GP G GK+ +AN ++ +   +     A SL +
Sbjct: 220 PPRGVLLHGPPGCGKTMIANAFAAEIGVSFIPISAPSLVA 259


>gi|148550872|ref|YP_001260302.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii
           RW1]
 gi|148503283|gb|ABQ71535.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii
           RW1]
          Length = 271

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 22/113 (19%)

Query: 66  VVILVGPSGSGKSCLANIWSDKS-----------RSTRFSNIAKSLDSILIDTR------ 108
             +L+GP G+GK+ LA     ++            +T  + +AK+ D   +D +      
Sbjct: 104 TTLLLGPPGTGKTHLAVALGREAIRQNYSVQFVTAATLVAMLAKAHDDGSLDKQLTQLAR 163

Query: 109 -KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            K ++++++  L F        F +++  ++   S+L+T+      WG    D
Sbjct: 164 PKLLIIDELGYLPFEANAAHLFFQLVSRRYEKG-SILITSNRSVGEWGGVFGD 215


>gi|119174931|ref|XP_001239786.1| hypothetical protein CIMG_09407 [Coccidioides immitis RS]
 gi|303314629|ref|XP_003067323.1| Cell division control protein 48, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106991|gb|EER25178.1| Cell division control protein 48, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320037644|gb|EFW19581.1| cell division control protein Cdc48 [Coccidioides posadasii str.
           Silveira]
          Length = 815

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 255 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 315 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNS---V 371

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 372 DPALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLAEDV 412


>gi|22096004|sp|Q8TI88|PAN_METAC RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
          Length = 421

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L G  G+GK+ LA   + ++ +T    +   L    I     ++ E
Sbjct: 192 PPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVRE 243


>gi|29654861|ref|NP_820553.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 493]
 gi|153208757|ref|ZP_01946995.1| Holliday junction DNA helicase RuvB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154706412|ref|YP_001423838.1| Holliday junction DNA helicase RuvB [Coxiella burnetii Dugway
           5J108-111]
 gi|161829825|ref|YP_001597406.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 331]
 gi|165918690|ref|ZP_02218776.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 334]
 gi|212219282|ref|YP_002306069.1| Holliday junction DNA helicase RuvB [Coxiella burnetii CbuK_Q154]
 gi|44888457|sp|Q83BE0|RUVB_COXBU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046028|sp|A9KF39|RUVB_COXBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|189046029|sp|A9N9A3|RUVB_COXBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|226698772|sp|B6J507|RUVB_COXB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|29542130|gb|AAO91067.1| holliday junction DNA helicase [Coxiella burnetii RSA 493]
 gi|120575789|gb|EAX32413.1| Holliday junction DNA helicase RuvB [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154355698|gb|ABS77160.1| holliday junction DNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|161761692|gb|ABX77334.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 331]
 gi|165917625|gb|EDR36229.1| Holliday junction DNA helicase RuvB [Coxiella burnetii RSA 334]
 gi|212013544|gb|ACJ20924.1| holliday junction DNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 351

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           D  +  +        +D         V++ GP G GK+ LA+I + + ++         L
Sbjct: 44  DIFIRAATNR--REALDH--------VLIFGPPGLGKTTLAHIIAHEMQAGLKQTSGPVL 93

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136
           +           LE  D+L  ++    H +N   + 
Sbjct: 94  EKAGDLAALLTNLEPHDVLFIDEI---HRLNPAIEE 126


>gi|15227690|ref|NP_178463.1| CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide
           binding [Arabidopsis thaliana]
 gi|28201774|sp|Q9ZPR1|CD48B_ARATH RecName: Full=Cell division control protein 48 homolog B;
           Short=AtCDC48b
 gi|4406773|gb|AAD20084.1| putative AAA-type ATPase [Arabidopsis thaliana]
 gi|17064734|gb|AAL32521.1| putative AAA-type ATPase [Arabidopsis thaliana]
 gi|30725416|gb|AAP37730.1| At2g03670 [Arabidopsis thaliana]
 gi|330250640|gb|AEC05734.1| cell division control protein 48-B [Arabidopsis thaliana]
          Length = 603

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 42/171 (24%)

Query: 62  WPSRVVILVGPSGSGKS------------CLA--------NIWSDKSRSTRFSNIAKSLD 101
           WP R ++L GP G+GK+             L            + +S        A++  
Sbjct: 55  WP-RGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASS 113

Query: 102 SILIDTRKPVLLEDIDLLDFNDTQ-----------LFHII--NSIHQYDSSLLMTARTFP 148
             + D    + +++ID+L                 LF ++  N        +++ A T  
Sbjct: 114 HAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMDSNKPSSSAPRVVVVAST-- 171

Query: 149 VSWGVCLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                  P L    R  A  +V++S P+++   K++      +++ +D  +
Sbjct: 172 NRVDAIDPALRRAGRFDA--LVEVSTPNEEDRLKILQ--LYTKKVNLDPSV 218


>gi|323489998|ref|ZP_08095219.1| Holliday junction DNA helicase RuvB [Planococcus donghaensis
           MPA1U2]
 gi|323396294|gb|EGA89119.1| Holliday junction DNA helicase RuvB [Planococcus donghaensis
           MPA1U2]
          Length = 332

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 29/202 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA + +++           +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLAAVIANEMEVNVKMTSGPAIERPGDLAAIVSSLEPGDVLFIDEI-- 113

Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDL--------CSRLKA------- 164
            H +N   +        D  L +     P +  V L DL         +R  A       
Sbjct: 114 -HRLNRAIEEVLYPAMEDFCLDIVVGKGPTARSVRL-DLPPFTLIGATTRAGALSAPLRD 171

Query: 165 --ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
               + ++   D + L +++++     +  I+   A  I +R   +   A +L+ ++ + 
Sbjct: 172 RFGVLSRLDYYDTEALTEIVIRSSKLFEADINPNAAVEIARRSRGTPRIANRLLKRVRDY 231

Query: 223 ALSRGMG-ITRSLAAEVLKETQ 243
           A  RG G IT  +A + L+  Q
Sbjct: 232 AQVRGTGTITMDMAEQALEMLQ 253


>gi|308490035|ref|XP_003107210.1| hypothetical protein CRE_14579 [Caenorhabditis remanei]
 gi|308252316|gb|EFO96268.1| hypothetical protein CRE_14579 [Caenorhabditis remanei]
          Length = 404

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P    +L GP G+GK+ LA+    +        ++ ++    I     ++ E        
Sbjct: 183 PFNSCLLFGPPGTGKTLLASALESQLDCAFIKVVSSAIVDKYIGESARIIRE-------- 234

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 235 ------MFNYARDHQ 243


>gi|302348095|ref|YP_003815733.1| Proteasome-activating nucleotidase [Acidilobus saccharovorans
           345-15]
 gi|302328507|gb|ADL18702.1| Proteasome-activating nucleotidase [Acidilobus saccharovorans
           345-15]
          Length = 388

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   + + ++T    +A    +  I     ++ E
Sbjct: 166 PPKGVLLYGPPGTGKTLVARALAGEVKATFIRVVASQFVNKFIGEGARIVRE 217


>gi|308235855|ref|ZP_07666592.1| cobalt ABC transporter, ATP-binding protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311114442|ref|YP_003985663.1| ABC transporter ATP-binding protein [Gardnerella vaginalis ATCC
           14019]
 gi|310945936|gb|ADP38640.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Gardnerella vaginalis ATCC 14019]
          Length = 605

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 17/107 (15%)

Query: 69  LVGPSGSGKSCLANIWS---------DKSRSTRFSNIA-KSLDSILIDTRKPVLLEDID- 117
           ++GPSGSGK+ LA+I+S         + S   + +    K+L    I      +++DID 
Sbjct: 49  IIGPSGSGKTTLASIFSGAIPHHYSGELSGIVKIAGQETKNLALTNIACLIGSVIQDIDA 108

Query: 118 ---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
                +  D  LF + N    ++    +  R       V + DL +R
Sbjct: 109 QMVAANVEDEILFGLENFGVAHNE---IPNRIDEALQIVGISDLRNR 152


>gi|227431371|ref|ZP_03913423.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227352881|gb|EEJ43055.1| crossover junction endodeoxyribonuclease [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  S+ + R  N A          ++   +     +LL++I 
Sbjct: 43  MILYGPPGTGKTSIASAIAGSSKYAFRMLNAATDSQKDLQIVVEEAKMSGTVVLLLDEIH 102

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            L+    D  L H+     +  + +L+ A T      V  P + SR     + +++   +
Sbjct: 103 RLNKIKQDFLLPHL-----ESGAIILIGATTENPYINVT-PAIRSR---TQIFEVNSLSE 153

Query: 176 DFLEKVIVKMFADR 189
             +   + +   D+
Sbjct: 154 TDITNAVKRAITDK 167


>gi|227524305|ref|ZP_03954354.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088536|gb|EEI23848.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
           ATCC 8290]
          Length = 424

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 16/131 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117
           +IL GP G+GK+ +A+  +  ++ + R  N A           +   +     +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD      F +   + +  + +L+ A T      +  P + SR     + ++       
Sbjct: 102 RLDKTKQD-FLL--PLLEKGAIILIGATTENPYININ-PAIRSR---TQIFEVHPLSPKD 154

Query: 178 LEKVIVKMFAD 188
           +++ +++   D
Sbjct: 155 IKQAVLRALKD 165


>gi|213409838|ref|XP_002175689.1| ribosome biogenesis ATPase RIX7 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003736|gb|EEB09396.1| ribosome biogenesis ATPase RIX7 [Schizosaccharomyces japonicus
           yFS275]
          Length = 782

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++S++   S     L +  +   +  +
Sbjct: 534 VLLWGPPGCGKTLLAKAVANESKANFISVRGPELLNKFVGESERAV 579



 Score = 36.3 bits (83), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R V+L GP G GK+ LAN  +++      S  A S+
Sbjct: 206 PPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSI 243


>gi|254468300|ref|ZP_05081706.1| AAA ATPase, central region [beta proteobacterium KB13]
 gi|207087110|gb|EDZ64393.1| AAA ATPase, central region [beta proteobacterium KB13]
          Length = 429

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 30/193 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ +A   ++       S  A       + +    + E +D  +FN  
Sbjct: 43  PSIILWGPPGVGKTSIAYAIANSVNYEFISLSA-------VLSGVKDIREAVDKANFNKD 95

Query: 125 Q------LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
           Q      LF    H  N           +      + A T   S+ V    L SR     
Sbjct: 96  QNQKKTMLFIDEVHRFNKSQQDAFLPHVENGLFTFIGATTENPSFEVNSA-LLSR---CQ 151

Query: 167 VVKISLPDDDFLEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
           V  ++   ++ L+ ++ K  +    I +D+    +I++           LV+ +   +  
Sbjct: 152 VYILNSLSNEALKTILNKALSIQENIKLDEPSTEFIIEYANGDGRRLLNLVEVVYFYSKD 211

Query: 226 RGMGITRSLAAEV 238
           + + +   L  ++
Sbjct: 212 KPIEVDIDLIKKI 224


>gi|198285461|gb|ACH85269.1| proteasome (prosome, macropain) 26S subunit, ATPase 1a [Salmo
           salar]
          Length = 438

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 67/208 (32%), Gaps = 49/208 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 216 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 275

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146
                 +++ID +                  L  ++N +     + D  ++M        
Sbjct: 276 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTLLELLNQLDGFDSRGDVKVIMATNRIETL 335

Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA--AYIVQR 204
            P        D          ++  LPD+    ++     +   + +   +     I+ +
Sbjct: 336 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFNIHTSR--MTVADDVTLDDLILAK 385

Query: 205 MERSLVFAEKLVDKMDNLALSRGM-GIT 231
            + S    + +  +   +AL      +T
Sbjct: 386 DDLSGADIKAICTEAGLMALRERRMKVT 413


>gi|81362425|gb|ABB71588.1| 26S proteasome subunit ATPase 4 [Schistosoma mansoni]
          Length = 407

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 185 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 236


>gi|157413172|ref|YP_001484038.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9215]
 gi|254526354|ref|ZP_05138406.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|157387747|gb|ABV50452.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9215]
 gi|221537778|gb|EEE40231.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 637

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 44/200 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCL 276

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 277 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSAL 336

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       V +  PD      ++     ++++  D      I +R       A
Sbjct: 337 ------MRPGRFDRQVTVDAPDIKGRLSILEVHARNKKLQ-DDLTLESIARRTP-GFTGA 388

Query: 213 EKLVDKMDNLA-LSRGMGIT 231
             L + ++  A L+     T
Sbjct: 389 -DLANLLNEAAILTARRRKT 407


>gi|134098338|ref|YP_001103999.1| transposase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910961|emb|CAM01074.1| transposase, ISlxx1 [Saccharopolyspora erythraea NRRL 2338]
          Length = 255

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 47/152 (30%)

Query: 30  FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL- 80
           F F     + RD        D +                      V+ +GP G+GK+ L 
Sbjct: 73  FDFDHQRSLKRDTITHLGTLDFIAGKEN-----------------VVFLGPPGTGKTHLS 115

Query: 81  --ANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND 123
               I + ++        A    + L +                   ++++++  + F  
Sbjct: 116 IGLGIRACQAGHRVSFATAAGWVARLAEASHAGRLQQELVKLGRIPLLIIDEVGYIPFEA 175

Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                 F ++ S     +SL++T+      WG
Sbjct: 176 EAANLFFQLV-SARYERASLIVTSNKPFGRWG 206


>gi|126725519|ref|ZP_01741361.1| FtsH [Rhodobacterales bacterium HTCC2150]
 gi|126704723|gb|EBA03814.1| FtsH [Rhodobacterales bacterium HTCC2150]
          Length = 629

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 63/198 (31%), Gaps = 47/198 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 179 ALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 238

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTF-----PVS 150
           V +++ID +  N            +  L  +   ++     +  +++ A        P  
Sbjct: 239 VFIDEIDAVGRNRGAGHGGGNDEREQTLNQLLVEMDGFESNEGVIILAATNRRDVLDPAL 298

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
                 D          V++  PD    +K++      R+  +   +   ++ R      
Sbjct: 299 LRPGRFD--------RQVQVPNPDIKGRDKILAVHA--RKTPLGPDVDLRLIARGTPGFS 348

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  AL+   
Sbjct: 349 GA-DLANLVNEAALTAAR 365


>gi|88603693|ref|YP_503871.1| AAA family ATPase, CDC48 subfamily protein [Methanospirillum
           hungatei JF-1]
 gi|88189155|gb|ABD42152.1| AAA family ATPase, CDC48 subfamily [Methanospirillum hungatei JF-1]
          Length = 804

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           R V+L GP G+GK+ LA   +++S +   +
Sbjct: 492 RGVLLYGPPGTGKTLLAKAVANESGANFIA 521



 Score = 36.3 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ +A   +++S +    
Sbjct: 217 PPKGVLLFGPPGTGKTLIAKAVANESGAHFIP 248


>gi|74150873|dbj|BAE25540.1| unnamed protein product [Mus musculus]
          Length = 759

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  I   +
Sbjct: 509 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAE 564

Query: 110 PVL 112
            ++
Sbjct: 565 KII 567


>gi|11181772|ref|NP_068362.1| fidgetin [Mus musculus]
 gi|81917406|sp|Q9ERZ6|FIGN_MOUSE RecName: Full=Fidgetin
 gi|10442027|gb|AAG17289.1|AF263913_1 fidgetin [Mus musculus]
 gi|74200924|dbj|BAE37359.1| unnamed protein product [Mus musculus]
 gi|123228758|emb|CAM15990.1| fidgetin [Mus musculus]
 gi|123232911|emb|CAM20502.1| fidgetin [Mus musculus]
          Length = 759

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  I   +
Sbjct: 509 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAE 564

Query: 110 PVL 112
            ++
Sbjct: 565 KII 567


>gi|46143545|ref|ZP_00204501.1| COG0593: ATPase involved in DNA replication initiation
          [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
          Length = 91

 Score = 39.0 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 19/58 (32%)

Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
           QL     +    + D+    +++     L  ++         + G   SGKS L   
Sbjct: 1  MQLPLPIHQVDDETFDNFYAENSLVLLDSLRQNFIDVQQPFFYIWGGKSSGKSHLLKA 58


>gi|259417998|ref|ZP_05741917.1| lipase B [Silicibacter sp. TrichCH4B]
 gi|259346904|gb|EEW58718.1| lipase B [Silicibacter sp. TrichCH4B]
          Length = 587

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           P   V ++GPSGSGKS LA +    + + R +     LD   +    P +L
Sbjct: 359 PGEAVGVIGPSGSGKSTLARV---LTGAWRTAAGTVRLDGASLSQYDPAVL 406


>gi|260576967|ref|ZP_05844948.1| type I secretion system ATPase [Rhodobacter sp. SW2]
 gi|259020809|gb|EEW24124.1| type I secretion system ATPase [Rhodobacter sp. SW2]
          Length = 578

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
           +V    +QAV    S+   P + + ++GPSGSGKS LA        + + +     LD  
Sbjct: 341 VVPPGDQQAVLRAVSFRLEPGQALGVIGPSGSGKSTLAR---ALIGAWKPAGGKVRLDGA 397

Query: 104 LIDTRKPVLLEDIDLLDFNDTQLFH---IINSIHQYDSS 139
            ++   P +L            LF      N      + 
Sbjct: 398 TLEQYDPDVLGSYIGYLPQRVALFDGTVAENIARLQGNR 436


>gi|196228384|ref|ZP_03127251.1| AAA ATPase central domain protein [Chthoniobacter flavus Ellin428]
 gi|196227787|gb|EDY22290.1| AAA ATPase central domain protein [Chthoniobacter flavus Ellin428]
          Length = 426

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 27/172 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ LA I +  ++S RF  ++    ++    R      +        T L
Sbjct: 34  IILFGPPGTGKTTLAEIIASATQS-RFERLSGVESNVADLRRVIATAANRLTNKGEKTIL 92

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  +  L+ A T    + +  P L SR   + V ++    
Sbjct: 93  FIDEIHRWNKAQQDVLLPDVERGTVRLIGATTHNPFYYINSP-LVSR---SQVFQLEPLT 148

Query: 175 DDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
              L K+  +   D  R      I + ++   ++    +     A K ++ +
Sbjct: 149 PADLVKLQKRALTDEERGFGKMKIEVAEEALLHLATVAD---GDARKCLNAL 197


>gi|195576292|ref|XP_002078010.1| GD22765 [Drosophila simulans]
 gi|194190019|gb|EDX03595.1| GD22765 [Drosophila simulans]
          Length = 523

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 37/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P R V+L GP G+GK+ +A   + ++++  FS    SL S               +    
Sbjct: 282 PPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAH 341

Query: 109 KPVL--LEDIDLL----DFNDTQ---------LFHIINSIHQYDSSLLMTART-FPVSWG 152
           +P +  ++++D L      N+ +         L H+  +    +  +L+   T  P    
Sbjct: 342 QPAIIFIDEVDSLLSKRSGNENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQEL- 400

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
               D   R +    + + LP  +  +K+I K+   RQ+  +  +  
Sbjct: 401 ----DEAVRRRFVRRLYVPLPTREARQKIIEKLI--RQVKHNLDVVQ 441


>gi|154420964|ref|XP_001583496.1| proteasome endopeptidase complex [Trichomonas vaginalis G3]
 gi|121917738|gb|EAY22510.1| proteasome endopeptidase complex, putative [Trichomonas vaginalis
           G3]
          Length = 422

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + V+L GP G+GK+ LA   +  + ST        L  + +     ++
Sbjct: 201 PPKGVLLFGPPGTGKTMLARACAASTNSTFLRLAGPQLVQMFVGEGSRLV 250


>gi|78779330|ref|YP_397442.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712829|gb|ABB50006.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str.
           MIT 9312]
          Length = 584

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 69/217 (31%), Gaps = 55/217 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GP G+GK+ LA   + +S     S  A     + +                     
Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRELFFKAKEKSPCI 229

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +           ND       QL   ++        +++ A   P       
Sbjct: 230 IFIDEIDSIGRQRGSGIGGGNDEREQTLNQLLTELDGFADNSGIIVLAATNRPDILDAAL 289

Query: 152 ----------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID-KKLAAY 200
                      V LPDL  R K  +V  +  P     ++V +  +A R +      LA  
Sbjct: 290 LRPGRFDRKIEVMLPDLDGRKKILSVHSLPKP---LSKEVDLGYWASRTVGFSGADLANL 346

Query: 201 I---VQRMERSLVFA---EKLVDKMDNLALSRGMGIT 231
           +        R          + + +D + +     +T
Sbjct: 347 MNESAIHCARDESKLISDLHIENALDKITIGLRSSLT 383


>gi|9507562|ref|NP_052893.1| transposon NTP-binding protein [Plasmid R100]
 gi|66968559|ref|YP_245436.1| IstB-1 transposition-associated protein [Pseudomonas aeruginosa]
 gi|111038086|ref|YP_709173.1| IstB protein [IncP-1 plasmid pKJK5]
 gi|133756453|ref|YP_001096409.1| hypothetical protein NR1_p013 [Escherichia coli]
 gi|194451615|ref|YP_002045449.1| transposon NTP-binding protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|221218589|ref|YP_002527547.1| putative transposase protein IstB [Escherichia coli]
 gi|237640312|ref|YP_002891167.1| IstB [Escherichia coli]
 gi|237810055|ref|YP_002894495.1| IstB [Escherichia coli]
 gi|261888721|ref|YP_003264409.1| istb-1 transposition-associated protein [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|300819963|ref|ZP_07100144.1| IstB-like ATP binding protein [Escherichia coli MS 107-1]
 gi|300906163|ref|ZP_07123878.1| IstB-like ATP binding protein [Escherichia coli MS 84-1]
 gi|301302522|ref|ZP_07208652.1| IstB-like ATP binding protein [Escherichia coli MS 124-1]
 gi|301329496|ref|ZP_07222295.1| IstB-like ATP binding protein [Escherichia coli MS 78-1]
 gi|305696847|ref|YP_003864161.1| istb-1 transposition-associated protein [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|1022913|gb|AAA79726.1| IstB [Insertion sequence IS1326]
 gi|1155276|gb|AAC53728.1| IstB [Shigella flexneri]
 gi|1292928|gb|AAC44319.1| IstB [Pseudomonas aeruginosa]
 gi|2209191|gb|AAB61449.1| IstB [Pseudomonas aeruginosa]
 gi|3513666|gb|AAC33916.1| IstB [Escherichia coli]
 gi|5103161|dbj|BAA78797.1| NTP-binding protein [Plasmid R100]
 gi|24527242|gb|AAM89411.1| IstB [Klebsiella pneumoniae]
 gi|46092535|dbj|BAD14391.1| IstB [Pseudomonas aeruginosa]
 gi|66862641|emb|CAI46939.1| IstB-1 transposition-associated protein [Pseudomonas aeruginosa]
 gi|74055075|gb|AAZ95876.1| IstB [Escherichia coli]
 gi|83627326|dbj|BAE54327.1| hypothetical protein [Escherichia coli]
 gi|89033274|gb|ABD59952.1| istB [Escherichia coli]
 gi|110781091|emb|CAK02675.1| IstB protein [IncP-1 plasmid pKJK5]
 gi|194337958|emb|CAQ51370.1| IstB protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|194409919|gb|ACF70138.1| transposon NTP-binding protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|215252917|gb|ACJ63576.1| putative transposase protein IstB [Escherichia coli]
 gi|229561531|gb|ACQ77734.1| IstB [Escherichia coli]
 gi|229561911|gb|ACQ78112.1| IstB [Escherichia coli]
 gi|257043827|gb|ACV33244.1| IstB [Enterobacter cloacae]
 gi|261857308|emb|CBA11375.1| istb (istb-1 transposition-associated protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium]
 gi|289065284|gb|ADC80787.1| IstB [Escherichia coli]
 gi|289065332|gb|ADC80833.1| IstB [Escherichia coli]
 gi|300402032|gb|EFJ85570.1| IstB-like ATP binding protein [Escherichia coli MS 84-1]
 gi|300527463|gb|EFK48525.1| IstB-like ATP binding protein [Escherichia coli MS 107-1]
 gi|300842047|gb|EFK69807.1| IstB-like ATP binding protein [Escherichia coli MS 124-1]
 gi|300844359|gb|EFK72119.1| IstB-like ATP binding protein [Escherichia coli MS 78-1]
 gi|304376148|dbj|BAJ15310.1| istb-1 transposition-associated protein [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|315252939|gb|EFU32907.1| IstB-like ATP binding protein [Escherichia coli MS 85-1]
 gi|323903323|gb|ADY11087.1| IstB [Escherichia coli]
          Length = 261

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-----------------RSTRFSNIAKSLDSIL--IDT 107
           V+L+G  G+GK+ LA     ++                  +      +     I   +  
Sbjct: 102 VVLIGGPGTGKTHLATAIGTQAVMHLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLY 161

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
              V+L+++  L F+ T    LFH+++ +++  +S+++T       W 
Sbjct: 162 ADLVILDELGYLPFSQTGGALLFHLLSKLYE-KTSVILTTNLSFSEWS 208


>gi|300934649|ref|ZP_07149905.1| DNA repair protein RadA [Corynebacterium resistens DSM 45100]
          Length = 478

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 63  PSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED--- 115
           P   V+L G  G GKS L    A  W+   R+       +S+  +     +   L+D   
Sbjct: 96  PGSAVLLAGEPGVGKSTLLLEVAARWAKLGRTVLILTAEESVGQVRHRAERTGALDDRLY 155

Query: 116 IDLLDFNDTQLFHI 129
           +   +  +  L HI
Sbjct: 156 LANENDLERALAHI 169


>gi|296535991|ref|ZP_06898135.1| crossover junction ATP-dependent DNA helicase RuvB [Roseomonas
           cervicalis ATCC 49957]
 gi|296263677|gb|EFH10158.1| crossover junction ATP-dependent DNA helicase RuvB [Roseomonas
           cervicalis ATCC 49957]
          Length = 342

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 76/201 (37%), Gaps = 28/201 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----STRFSNIAKSLDSILIDT----RKPVLLEDIDL 118
           V+L GP G GK+ LA I + +      +T    + ++ D   I T    R  + +++I  
Sbjct: 55  VLLHGPPGLGKTTLAQIVAREMGVGFRATSGPVLQRAGDLAAILTNLQPRDVLFVDEIHR 114

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP----------------DLCSRL 162
           L     +   +  ++  +   L++       +  + LP                 L  R 
Sbjct: 115 LQPALEE--TLYPAMEDFQLDLIIGEGPAARTVRIDLPPFTLVGATTRAGLLATPLRDRF 172

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
                ++   P++  L  ++ +        + ++ AA I  R   +   A +L+ ++ + 
Sbjct: 173 GIPLRLQFYTPEELLL--IVRRGAQKLGFALTEEGAAEIANRSRGTPRIAGRLLRRVRDF 230

Query: 223 ALSRGMGITRSLAAEVLKETQ 243
           AL  G    R++A   L   +
Sbjct: 231 ALVSGKPADRAMADAALNRLE 251


>gi|288573311|ref|ZP_06391668.1| AAA family ATPase, CDC48 subfamily [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569052|gb|EFC90609.1| AAA family ATPase, CDC48 subfamily [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 707

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 45/123 (36%), Gaps = 30/123 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + V+L GP G+GK+ +A   ++++ +              +    + L  +  + +  
Sbjct: 207 PPKGVLLYGPPGTGKTVIAKAVANETDAWFTHISGPEIIGKYYGESEQRLREVFEEAQAH 266

Query: 111 ----VLLEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID +                   QL  +++ +      +++ A   P +  
Sbjct: 267 APSIIFIDEIDAIAPKREEMGGEKQVERRVVAQLLALMDGLQARGQIVVIAATNLPNTLD 326

Query: 153 VCL 155
             L
Sbjct: 327 PAL 329



 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R ++L G SG+GK+ L    + +S +   S    SL S  +   +  + E
Sbjct: 482 PPRGIMLHGKSGTGKTLLVKALARESGANYISVKGPSLMSRFVGESERAIRE 533


>gi|257083007|ref|ZP_05577368.1| IstB domain-containing protein ATP-binding protein [Enterococcus
           faecalis E1Sol]
 gi|256991037|gb|EEU78339.1| IstB domain-containing protein ATP-binding protein [Enterococcus
           faecalis E1Sol]
          Length = 253

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 22/106 (20%)

Query: 67  VILVGPSGSGKSCLANIW---SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI------- 116
           ++ +G SG GK+ LA      + K  ++ +  ++  L   L    K   LE         
Sbjct: 103 LLFIGNSGVGKTHLATAIGIEASKRENSVYFILSNELIEKLDRAHKRGTLEAALKRYSRY 162

Query: 117 DLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSW 151
           DLL  ++              F +IN  ++  S++L T+      W
Sbjct: 163 DLLIIDEIGYLPMTKNGANLFFQLINLRYEKKSTVL-TSNIPLSQW 207


>gi|226286674|gb|EEH42187.1| ATPase family AAA domain-containing protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 973

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 702 PGLLLYGPPGTGKTMLAKAVARQSGATVLE 731


>gi|223985489|ref|ZP_03635548.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM
           12042]
 gi|223962578|gb|EEF67031.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM
           12042]
          Length = 619

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 46/141 (32%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 202 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGAARVRDLFKQAQEKAPCI 261

Query: 111 VLLEDIDLL----------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
           V +++ID +            ND       QL   ++        +++ A   P +    
Sbjct: 262 VFIDEIDTIGKKRDSANGMGGNDEREQTLNQLLAEMDGFDGSKGVVILAATNRPETLDKA 321

Query: 152 -----------GVCLPDLCSR 161
                       V LPDL  R
Sbjct: 322 LLRPGRFDRRIPVELPDLKGR 342


>gi|218291271|ref|ZP_03495247.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238819|gb|EED06031.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 447

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 83/244 (34%), Gaps = 45/244 (18%)

Query: 8   YSFFVPDKQKNDQP---KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS 64
           +S     + + + P   + +   L         + RD +L         R+I+       
Sbjct: 4   FSLASEHEAEREAPLAYRMRPRSLDEMVGHENLVGRDGIL--------RRMIERDR---L 52

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---- 120
             +IL GP G+GK+ +A + + ++++      A +     +        E+ DL      
Sbjct: 53  MSIILYGPPGTGKTTIAEVIARQTKARFIPLNAVTSGIADVRKAVETAREERDLYGRRTV 112

Query: 121 --FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
              ++    H  N           +     L+ A T    + V    L SR   + V ++
Sbjct: 113 VFLDEI---HRFNKNQQDALLPHVEAGLISLVGATTENPYFDVNAA-LLSR---SHVFRL 165

Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
                D + +++    AD  R +      +    A  ++    R    A + ++ ++  A
Sbjct: 166 EPLSPDDIGRLVDMAIADEERGLGRMRVRLHPD-ARRVLTLQAR--GDARRALNLLELAA 222

Query: 224 LSRG 227
            +  
Sbjct: 223 FAAR 226


>gi|238609839|ref|XP_002397573.1| hypothetical protein MPER_01973 [Moniliophthora perniciosa FA553]
 gi|215472338|gb|EEB98503.1| hypothetical protein MPER_01973 [Moniliophthora perniciosa FA553]
          Length = 226

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 73/190 (38%), Gaps = 40/190 (21%)

Query: 37  GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF--- 93
            ++R D L+       ++L+ S    P R +I  G  G+GK+ +A   ++++ +  F   
Sbjct: 9   SVNRSDFLISH-----LQLLQSIGIKPPRGIISSGHPGTGKTFMARAVANETGAFFFLIN 63

Query: 94  -------------SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT------------QLFH 128
                        SN+ K+ +    ++   + +++ID +                 QL  
Sbjct: 64  GPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLT 123

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFA 187
           +++ +    + ++M A   P S     P L  R  +    V I +PD     +++     
Sbjct: 124 LMDGLKARSNVVVMAATNRPNSID---PALR-RFGRFDREVDIGIPDPTGRLEIL--RIH 177

Query: 188 DRQIFIDKKL 197
            + + +   +
Sbjct: 178 TKNMKLADDV 187


>gi|195037092|ref|XP_001989999.1| GH18484 [Drosophila grimshawi]
 gi|229559926|sp|B4JII0|SPAST_DROGR RecName: Full=Spastin
 gi|193894195|gb|EDV93061.1| GH18484 [Drosophila grimshawi]
          Length = 782

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++
Sbjct: 539 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLV 588


>gi|172060287|ref|YP_001807939.1| transcriptional regulator [Burkholderia ambifaria MC40-6]
 gi|171992804|gb|ACB63723.1| transcriptional regulator, winged helix family [Burkholderia
           ambifaria MC40-6]
          Length = 481

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 70/196 (35%), Gaps = 53/196 (27%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS--------------RSTRFSNIAKSLDSILIDTRK 109
           SRVV L GP G GK+CLA   + ++               +   + +++   +       
Sbjct: 173 SRVVTLTGPGGVGKTCLAIEHAHRTTAAGTSDVVFIDLEEARSLAAVSQIGPAPSRPAGT 232

Query: 110 PVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLPDLCSRLKAAT- 166
            ++L++ + +  ++     ++  +     SL  L+T+R               RL+ A  
Sbjct: 233 LLVLDNAEHI-VDEVA--DLVERLIGQWHSLRVLLTSRE--------------RLRIAPE 275

Query: 167 -VVKISL---PDDDFLEKVIVK---------MFADRQIFIDKKLAAYIVQRMERSLVFAE 213
            V ++     P D+     +++           +   + +D +    +V  + R L    
Sbjct: 276 TVFRVEPLALPADESCRDKLMQSPAVELFLERASRCGVRVDDEHQLRLVAEICRRLDGLP 335

Query: 214 KLVDKMDNLALSRGMG 229
             ++      L+ G  
Sbjct: 336 LAIE------LAAGRA 345


>gi|167463109|ref|ZP_02328198.1| Vesicle-fusing ATPase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381863|ref|ZP_08055817.1| hypothetical protein PL1_0569 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154251|gb|EFX46573.1| hypothetical protein PL1_0569 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 516

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           D L+          I+     P + ++L GP G+GK+ +A   +  + S   +       
Sbjct: 89  DFLIKP------EQIERLGIRPLKGILLTGPPGTGKTLMAKAAAHYTNSVFVAASGSEFV 142

Query: 102 SILIDTRKP 110
            + +     
Sbjct: 143 EMYVGVGAS 151


>gi|163815847|ref|ZP_02207217.1| hypothetical protein COPEUT_02026 [Coprococcus eutactus ATCC 27759]
 gi|158448657|gb|EDP25652.1| hypothetical protein COPEUT_02026 [Coprococcus eutactus ATCC 27759]
          Length = 813

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDT 124
            + G SGSGK+ L + +    +           D ++I+    RK ++++++  L + D 
Sbjct: 33  YIYGVSGSGKTTLVSRYLGTRKYMLVDAGGIRPDDLVIEVSNARKIIVIDNLHELSWGDV 92

Query: 125 QLF--HIINSIHQYDSSLLMTARTFPVSW 151
                 II  I + D  +++  R     W
Sbjct: 93  DTVREQIIELIRREDVWVILVGRCPVPPW 121


>gi|149046587|gb|EDL99412.1| proteasome (prosome, macropain) 26S subunit, ATPase 2, isoform
           CRA_c [Rattus norvegicus]
 gi|221042402|dbj|BAH12878.1| unnamed protein product [Homo sapiens]
          Length = 296

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 71  PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 130

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 131 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 190

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 191 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 231

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 232 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 266


>gi|149032004|gb|EDL86916.1| rCG50526 [Rattus norvegicus]
          Length = 621

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 43/178 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P R V+  GP G GK+ L    + +  +T                 A+ L +     R  
Sbjct: 396 PPRTVLFFGPRGCGKALLGRCLATRLGATLLRLRGAGLATSGAVEGARLLQAAFAAARCR 455

Query: 109 --KPVLLEDIDLL--DFNDTQ-----LFHIINS---IHQYDSSLLMTARTFPVSWGVCLP 156
               +L+ ++D L    +D       L   ++           ++ T             
Sbjct: 456 PPAVLLISELDALLPARDDGASLRAPLLTCLDGGCGARADGVLVVGTTSRPAAL------ 509

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           D  +R + A    ++LPD     +++ +  A +   +            ER L    +
Sbjct: 510 DEATRRRFALRFYVALPDGAARGQILQRALAQQGCVLS-----------ERELAALVQ 556


>gi|148695048|gb|EDL26995.1| fidgetin, isoform CRA_a [Mus musculus]
          Length = 755

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  I   +
Sbjct: 505 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAE 560

Query: 110 PVL 112
            ++
Sbjct: 561 KII 563


>gi|154415376|ref|XP_001580713.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121914933|gb|EAY19727.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 382

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G+GK+ LA   +  + +   S +        +     ++ +
Sbjct: 162 PPRGVLLYGPPGTGKTMLAKAVAHHTHAAFISIVGSEFGQKYLGEGPKMVRD 213


>gi|119472663|ref|XP_001258398.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119406550|gb|EAW16501.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 805

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 550 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 589


>gi|91079282|ref|XP_972572.1| PREDICTED: similar to Nuclear valosin-containing protein-like
           (Nuclear VCP-like protein) (NVLp) [Tribolium castaneum]
          Length = 822

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R  +L GP G GK+ LAN  + +         A  L +
Sbjct: 241 PPRGFLLHGPPGCGKTLLANAIAGEIGVPLLKVAAPELVA 280



 Score = 37.1 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 574 VLLCGPPGCGKTLLAKAMANEAGINFISVKGPELLNMYVGESERAV 619


>gi|88602331|ref|YP_502509.1| proteasome-activating nucleotidase [Methanospirillum hungatei JF-1]
 gi|88187793|gb|ABD40790.1| Proteasome-activating nucleotidase [Methanospirillum hungatei JF-1]
          Length = 387

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ LA   +  +++T        L    I     ++ E
Sbjct: 166 PPKGILLHGPPGTGKTLLAKAVAHNAKATFIRMSGSELVHKYIGEGAQMVRE 217


>gi|39961729|ref|XP_364712.1| hypothetical protein MGG_09557 [Magnaporthe oryzae 70-15]
 gi|145011060|gb|EDJ95716.1| hypothetical protein MGG_09557 [Magnaporthe oryzae 70-15]
          Length = 750

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           P R ++L GP G+GK+ LA   + +S ST  +  A +L+S  +   +
Sbjct: 495 PPRGILLFGPPGTGKTMLARAVATESESTYIAVTASTLNSKYLGESE 541


>gi|13235385|emb|CAC33735.1| DnaA protein [Rickettsia typhi]
          Length = 255

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 32/131 (24%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCLANI 83
                     + D+ +V +  E A          S   + S  + L G  G GK+ L + 
Sbjct: 125 TLDL----RFTFDNFVVGAPNELAYAAARAVAESSGAVFESNPLFLYGGVGLGKTHLMHA 180

Query: 84  --W---------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND 123
             W               ++K        +      +  +  + V   +++DI  +   D
Sbjct: 181 IGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICGKD 240

Query: 124 ---TQLFHIIN 131
               + FH  N
Sbjct: 241 STQEEFFHTFN 251


>gi|73668165|ref|YP_304180.1| proteasome-activating nucleotidase [Methanosarcina barkeri str.
           Fusaro]
 gi|72395327|gb|AAZ69600.1| Proteasome-activating nucleotidase [Methanosarcina barkeri str.
           Fusaro]
          Length = 431

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L G  G+GK+ LA   + ++ +T    +   L    I     ++ E
Sbjct: 203 PPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVRE 254


>gi|58616284|ref|YP_195413.1| transposition helper protein [Azoarcus sp. EbN1]
 gi|56315745|emb|CAI10389.1| transposition helper protein [Aromatoleum aromaticum EbN1]
          Length = 255

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 27/145 (18%)

Query: 32  FPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANI 83
            P    +S  D      V  A   A+   DSW       ++L GP G GK+     L + 
Sbjct: 58  LPPDKRLSAFDFAAVPTVSKAHVTALAEGDSWLE-QGANILLFGPPGVGKTHLIASLGHA 116

Query: 84  WSDKSRSTRFS--------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---L 126
             ++     F+              ++    +   +D    ++ +D   +  +  +   L
Sbjct: 117 LVERGYRVLFTRTSDLVQRLQAARRDLRLPAELAKLDRFDLLICDDFSYVRRDQGETSVL 176

Query: 127 FHIINSIHQYDSSLLMTARTFPVSW 151
           F +I +      SL +TA      W
Sbjct: 177 FELI-AERYERKSLAITANQPFSGW 200


>gi|66812296|ref|XP_640327.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|74897137|sp|Q54SY2|NVL_DICDI RecName: Full=Putative ribosome biogenesis ATPase nvl; AltName:
           Full=Nuclear valosin-containing protein-like
 gi|60468363|gb|EAL66370.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 867

 Score = 39.0 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P R ++L GPSG GK+ LA   + + +   F+  A  + S +    +             
Sbjct: 249 PPRGILLHGPSGCGKTLLAKAIAGELKVPLFAISATEITSGVSGESEARVRTLFSNAIAQ 308

Query: 111 ----VLLEDIDLLD 120
               + +++ID + 
Sbjct: 309 APCIIFIDEIDAIA 322


>gi|323454767|gb|EGB10636.1| hypothetical protein AURANDRAFT_22562 [Aureococcus anophagefferens]
          Length = 267

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 14/140 (10%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI--AKSLDSILIDTRKPVLLEDIDLLD 120
            ++   L+GPSGSGK+ L +  +   RS   + +  A  +D      R+   +       
Sbjct: 35  AAQTTALMGPSGSGKTTLIHALAGTLRSRVPAELSGAVRVDGEPAGARRRCAVV------ 88

Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK--ISLPDDDFL 178
             +  LF +  ++ +  +      R       V    L  RL  A V +  +  P +  L
Sbjct: 89  GQEDALFPLF-TVRETLTLCAALTRRGEDPDRVAEATLR-RLGLAKVAETRVGDPSEPLL 146

Query: 179 EKVIVKMFADRQIFIDKKLA 198
             V       R++ I  +L 
Sbjct: 147 RGV--SGGERRRLSIGCELI 164


>gi|307244276|ref|ZP_07526391.1| Holliday junction DNA helicase RuvB [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492426|gb|EFM64464.1| Holliday junction DNA helicase RuvB [Peptostreptococcus stomatis
           DSM 17678]
          Length = 337

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I +++           +++           L++ D+L  ++   
Sbjct: 57  VLLYGPPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLQENDVLFIDEI-- 114

Query: 127 FHIINSIHQY 136
            H IN   + 
Sbjct: 115 -HRINRSVEE 123


>gi|301090485|ref|XP_002895455.1| 26S protease regulatory subunit 8 [Phytophthora infestans T30-4]
 gi|262098635|gb|EEY56687.1| 26S protease regulatory subunit 8 [Phytophthora infestans T30-4]
          Length = 326

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRE 229


>gi|229074127|ref|ZP_04207174.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-18]
 gi|229094787|ref|ZP_04225793.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-29]
 gi|229100862|ref|ZP_04231670.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-28]
 gi|229113742|ref|ZP_04243178.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-3]
 gi|228669739|gb|EEL25145.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-3]
 gi|228682562|gb|EEL36631.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-28]
 gi|228688655|gb|EEL42527.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-29]
 gi|228709021|gb|EEL61147.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-18]
          Length = 612

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 62/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D  +    I  R       
Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDDHINLRAIATRTP-GFSG 347

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 348 A-DLENLLNEAALVAAR 363


>gi|229170916|ref|ZP_04298519.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus MM3]
 gi|228612582|gb|EEK69801.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus MM3]
          Length = 612

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 62/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D  +    I  R       
Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDDHINLRAIATRTP-GFSG 347

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 348 A-DLENLLNEAALVAAR 363


>gi|221108162|ref|XP_002156452.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 412

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
             ++L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 107 PGILLAGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGESEKAV 154


>gi|167538762|ref|XP_001751040.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770449|gb|EDQ84145.1| predicted protein [Monosiga brevicollis MX1]
          Length = 331

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 57/157 (36%), Gaps = 16/157 (10%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-D 123
             ++L GP G+GK+      + +     +  +   +  ++    K V+L++ D +     
Sbjct: 56  PHLLLYGPPGTGKTSTIKACAKQLYGKGYKRMVLEVR-LVTSGFKLVILDEADAMSNEAQ 114

Query: 124 TQLFHIINSIHQYDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
             L  +I    ++    L+    ++  P           SR    T  + +   +D L+ 
Sbjct: 115 AALRRVIEQYTKHTRFCLICNYVSKISPAV--------QSR---CTRFRFAPLSEDELKS 163

Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
            + ++     + +  +    + +  +  +  A  ++ 
Sbjct: 164 QVQRVIKAENLTVTPEGIDALTRLADGDMRKALNILQ 200


>gi|110433415|gb|ABG74389.1| DnaA [Rickettsia typhi str. Wilmington]
          Length = 199

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 32/131 (24%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCLANI 83
                     + D+ +V +  E A          S   + S  + L G  G GK+ L + 
Sbjct: 69  TLDL----RFTFDNFVVGAPNELAYAAARAVAESSGAVFESNPLFLYGGVGLGKTHLMHA 124

Query: 84  --W---------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND 123
             W               ++K        +      +  +  + V   +++DI  +   D
Sbjct: 125 IGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICGKD 184

Query: 124 ---TQLFHIIN 131
               + FH  N
Sbjct: 185 STQEEFFHTFN 195


>gi|57997594|emb|CAI45980.1| hypothetical protein [Homo sapiens]
 gi|190690063|gb|ACE86806.1| fidgetin protein [synthetic construct]
 gi|190691437|gb|ACE87493.1| fidgetin protein [synthetic construct]
          Length = 759

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 509 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 564

Query: 110 PVL 112
            ++
Sbjct: 565 KII 567


>gi|169768094|ref|XP_001818518.1| hypothetical protein AOR_1_2826174 [Aspergillus oryzae RIB40]
 gi|238485043|ref|XP_002373760.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus flavus NRRL3357]
 gi|83766373|dbj|BAE56516.1| unnamed protein product [Aspergillus oryzae]
 gi|220701810|gb|EED58148.1| AAA family ATPase/60S ribosome export protein Rix7, putative
           [Aspergillus flavus NRRL3357]
          Length = 735

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   +++S +   S     L +  +   +  +
Sbjct: 512 VLLWGPPGCGKTLLAKAVANESHANFISVKGPELLNKYVGESERAV 557



 Score = 37.1 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G GK+ +AN ++ +      S  A S+ S +    +  L E
Sbjct: 204 PPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALRE 255


>gi|49475767|ref|YP_033808.1| recombination factor protein RarA [Bartonella henselae str.
           Houston-1]
 gi|49238574|emb|CAF27815.1| ATPase, aaa family [Bartonella henselae str. Houston-1]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 42/198 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             +I  GP G+GK+ +A + + ++     + S I   +  +               +  +
Sbjct: 55  GSMIFWGPPGTGKTTVARLLALETNFAFEQVSAIFTGVAELKKIFESA----QARFMSGS 110

Query: 123 DTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVV 168
            T LF    H  N           +  + +L+  T              L SR   A V+
Sbjct: 111 QTVLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR---ARVL 164

Query: 169 KISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
                D++ L  ++ +     ++ + +D      ++   +     A  L +++       
Sbjct: 165 TFLPHDNESLGMLLKRAEALEEKTLPLDDNARDVLIDMSDGDARAALTLAEEVWSVARPG 224

Query: 220 ---DNLAL----SRGMGI 230
              D  AL     R   I
Sbjct: 225 EIFDAAALRKIVQRRAPI 242


>gi|332234061|ref|XP_003266226.1| PREDICTED: fidgetin [Nomascus leucogenys]
          Length = 759

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 509 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 564

Query: 110 PVL 112
            ++
Sbjct: 565 KII 567


>gi|327275516|ref|XP_003222519.1| PREDICTED: 26S protease regulatory subunit 8-like [Anolis
           carolinensis]
          Length = 414

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 194 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 241


>gi|317419381|emb|CBN81418.1| 26S protease regulatory subunit 8 [Dicentrarchus labrax]
          Length = 398

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 225


>gi|297668728|ref|XP_002812574.1| PREDICTED: fidgetin-like [Pongo abelii]
          Length = 759

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 509 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 564

Query: 110 PVL 112
            ++
Sbjct: 565 KII 567


>gi|288919187|ref|ZP_06413525.1| ABC transporter related protein [Frankia sp. EUN1f]
 gi|288349434|gb|EFC83673.1| ABC transporter related protein [Frankia sp. EUN1f]
          Length = 289

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 43  LLVHSAIEQAVRLID---SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
                A   A+R +D   +   W    V +VGPSG GKS L ++ +    +   S +  +
Sbjct: 23  FGRAPAKRVALRGVDLSVAPGEW----VAIVGPSGCGKSTLLHLLAGLDTADSGS-VRLA 77

Query: 100 LDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI--------HQYDSSLLMTARTFPVSW 151
            + I   +     L     +      +F   N +         +    +  T R    + 
Sbjct: 78  GEEISALSAGRRALARRHRVGL----VFQAYNLVPHLTVQANVELGMRVAGTGRRATRAR 133

Query: 152 GVCLPDL 158
              L DL
Sbjct: 134 AQELLDL 140


>gi|281351659|gb|EFB27243.1| hypothetical protein PANDA_013936 [Ailuropoda melanoleuca]
          Length = 357

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 137 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 184


>gi|269138348|ref|YP_003295048.1| ATP-dependent protease Clp, ATPase subunit [Edwardsiella tarda
           EIB202]
 gi|267984008|gb|ACY83837.1| ATP-dependent protease Clp, ATPase subunit [Edwardsiella tarda
           EIB202]
 gi|304558380|gb|ADM41044.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Edwardsiella
           tarda FL6-60]
          Length = 423

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKDVTPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  S          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDSSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|229366526|gb|ACQ58243.1| 26S protease regulatory subunit 8 [Anoplopoma fimbria]
          Length = 406

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 233


>gi|225707968|gb|ACO09830.1| 26S protease regulatory subunit 8 [Osmerus mordax]
          Length = 406

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 233


>gi|254526680|ref|ZP_05138732.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202]
 gi|221538104|gb|EEE40557.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202]
          Length = 584

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 45/152 (29%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GP G+GK+ LA   + +S     S  A     + +                     
Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +           ND       QL   ++        +++ A   P       
Sbjct: 230 IFIDEIDSIGRQRGSGIGGGNDEREQTLNQLLTELDGFADNSGIIVLAATNRPDILDKAL 289

Query: 152 ----------GVCLPDLCSRLKAATVVKISLP 173
                      V LPDL  R K  +V  +S P
Sbjct: 290 LRPGRFDRKIEVMLPDLDGRKKILSVHSLSKP 321


>gi|222112089|ref|YP_002554353.1| phosphonate c-p lyase system protein phnk [Acidovorax ebreus
          TPSY]
 gi|221731533|gb|ACM34353.1| phosphonate C-P lyase system protein PhnK [Acidovorax ebreus
          TPSY]
          Length = 262

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSR 89
          WP  V+ +VG SGSGKS L N  + ++R
Sbjct: 34 WPGEVLAVVGESGSGKSTLLNAIAARTR 61


>gi|213691612|ref|YP_002322198.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523073|gb|ACJ51820.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457699|dbj|BAJ68320.1| recombination factor protein RarA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 465

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 28/144 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA I + +S          ++  K +  +L    + ++         
Sbjct: 63  VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 116

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 117 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 172

Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192
           +   + D   E V   +  DR + 
Sbjct: 173 LESLEPDQLTELVQRALTDDRGLK 196


>gi|197128441|gb|ACH44939.1| putative proteasome 26S subunit ATPase 5 variant 1 [Taeniopygia
           guttata]
          Length = 411

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 191 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 238


>gi|190347457|gb|EDK39727.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 418

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +    +    + A ++    I     ++ E
Sbjct: 199 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 246


>gi|157413381|ref|YP_001484247.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215]
 gi|157387956|gb|ABV50661.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215]
          Length = 584

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 45/152 (29%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GP G+GK+ LA   + +S     S  A     + +                     
Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +           ND       QL   ++        +++ A   P       
Sbjct: 230 IFIDEIDSIGRQRGSGIGGGNDEREQTLNQLLTELDGFADNSGIIVLAATNRPDILDKAL 289

Query: 152 ----------GVCLPDLCSRLKAATVVKISLP 173
                      V LPDL  R K  +V  +S P
Sbjct: 290 LRPGRFDRKIEVMLPDLDGRKKILSVHSLSKP 321


>gi|149054556|gb|EDM06373.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_b
           [Rattus norvegicus]
          Length = 416

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 196 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 243


>gi|149054559|gb|EDM06376.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_e
           [Rattus norvegicus]
          Length = 269

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 49  VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 96


>gi|123968548|ref|YP_001009406.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601]
 gi|123198658|gb|ABM70299.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601]
          Length = 584

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 45/152 (29%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GP G+GK+ LA   + +S     S  A     + +                     
Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +           ND       QL   ++        +++ A   P       
Sbjct: 230 IFIDEIDSIGRQRGSGIGGGNDEREQTLNQLLTELDGFADNSGIIVLAATNRPDILDSAL 289

Query: 152 ----------GVCLPDLCSRLKAATVVKISLP 173
                      V LPDL  R K  +V  +S P
Sbjct: 290 LRPGRFDRKIEVMLPDLDGRKKILSVHSLSKP 321


>gi|119513548|ref|ZP_01632566.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
 gi|119461797|gb|EAW42816.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414]
          Length = 628

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 67/205 (32%), Gaps = 47/205 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 328

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD     +V+     ++++     L   I +R       A
Sbjct: 329 ------LRPGRFDRQITVDAPDIKGRLEVLQVHARNKKLDPSVSL-DAIARRTP-GFTGA 380

Query: 213 EKLVDKMDNLAL--SRGMG--ITRS 233
             L + ++  A+  +R     IT  
Sbjct: 381 -DLANLLNEAAILTARRRKEGITIR 404


>gi|90078576|dbj|BAE88968.1| unnamed protein product [Macaca fascicularis]
          Length = 398

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 225


>gi|118102836|ref|XP_425834.2| PREDICTED: similar to mSUG1 protein [Gallus gallus]
          Length = 406

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 233


>gi|114669878|ref|XP_001149776.1| PREDICTED: similar to mSUG1 protein isoform 7 [Pan troglodytes]
 gi|119614675|gb|EAW94269.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
           CRA_a [Homo sapiens]
          Length = 383

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 163 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 210


>gi|114669882|ref|XP_511591.2| PREDICTED: similar to mSUG1 protein isoform 12 [Pan troglodytes]
          Length = 268

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 48  VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 95


>gi|109099868|ref|XP_001097992.1| PREDICTED: fidgetin [Macaca mulatta]
          Length = 759

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 509 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 564

Query: 110 PVL 112
            ++
Sbjct: 565 KII 567


>gi|148236805|ref|NP_001085482.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Xenopus
           laevis]
 gi|49255977|gb|AAH72829.1| MGC80185 protein [Xenopus laevis]
 gi|116284353|gb|AAH45221.1| MGC80185 protein [Xenopus laevis]
          Length = 415

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 195 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 242


>gi|326933955|ref|XP_003213063.1| PREDICTED: 26S protease regulatory subunit 8-like [Meleagris
           gallopavo]
          Length = 411

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 191 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 238


>gi|45361563|ref|NP_989358.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Xenopus
           (Silurana) tropicalis]
 gi|39850038|gb|AAH64153.1| hypothetical protein MGC75584 [Xenopus (Silurana) tropicalis]
          Length = 414

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 194 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 241


>gi|73965197|ref|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 3
           [Canis familiaris]
 gi|114669880|ref|XP_001149643.1| PREDICTED: similar to mSUG1 protein isoform 6 [Pan troglodytes]
          Length = 327

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 107 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 154


>gi|64084766|ref|NP_060556.2| fidgetin [Homo sapiens]
 gi|114581443|ref|XP_001151294.1| PREDICTED: fidgetin [Pan troglodytes]
 gi|115502199|sp|Q5HY92|FIGN_HUMAN RecName: Full=Fidgetin
 gi|151556526|gb|AAI48650.1| Fidgetin [synthetic construct]
 gi|162318224|gb|AAI56959.1| Fidgetin [synthetic construct]
 gi|193785029|dbj|BAG54182.1| unnamed protein product [Homo sapiens]
 gi|261857940|dbj|BAI45492.1| fidgetin [synthetic construct]
          Length = 759

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 509 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 564

Query: 110 PVL 112
            ++
Sbjct: 565 KII 567


>gi|51230594|ref|NP_001003740.1| 26S protease regulatory subunit 8 [Danio rerio]
 gi|50603847|gb|AAH78375.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Danio
           rerio]
 gi|182891110|gb|AAI65834.1| Psmc5 protein [Danio rerio]
          Length = 406

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 233


>gi|47219715|emb|CAG12637.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 406

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 233


>gi|148238082|ref|NP_001081635.1| 26S protease regulatory subunit 8 [Xenopus laevis]
 gi|3041724|sp|P46470|PRS8_XENLA RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName: Full=SUG1
           homolog; Short=xSUG1
 gi|1877414|emb|CAA57512.1| XSUG1 [Xenopus laevis]
          Length = 461

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 181 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 228


>gi|12846001|dbj|BAB26990.1| unnamed protein product [Mus musculus]
          Length = 406

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 233


>gi|1079323|pir||S52928 XSUG1 protein - African clawed frog
          Length = 283

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 181 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 228


>gi|695370|gb|AAC41735.1| thyroid receptor interactor [Homo sapiens]
 gi|1094810|prf||2106382A thyroid hormone receptor-interacting protein
          Length = 406

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 233


>gi|7110703|ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus]
 gi|13592141|ref|NP_112411.1| 26S protease regulatory subunit 8 [Rattus norvegicus]
 gi|24497435|ref|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Homo sapiens]
 gi|27806101|ref|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus]
 gi|47522792|ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa]
 gi|73965193|ref|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1
           [Canis familiaris]
 gi|114669860|ref|XP_001150043.1| PREDICTED: 26S protease regulatory subunit 8 isoform 10 [Pan
           troglodytes]
 gi|114669862|ref|XP_001150100.1| PREDICTED: similar to mSUG1 protein isoform 11 [Pan troglodytes]
 gi|149723381|ref|XP_001500958.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 5
           [Equus caballus]
 gi|291406361|ref|XP_002719523.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase 5-like
           [Oryctolagus cuniculus]
 gi|296201787|ref|XP_002806873.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit
           8-like [Callithrix jacchus]
 gi|297273391|ref|XP_001108909.2| PREDICTED: 26S protease regulatory subunit 8-like isoform 1 [Macaca
           mulatta]
 gi|301778301|ref|XP_002924560.1| PREDICTED: 26S protease regulatory subunit 8-like [Ailuropoda
           melanoleuca]
 gi|332243114|ref|XP_003270727.1| PREDICTED: 26S protease regulatory subunit 8 [Nomascus leucogenys]
 gi|49065781|sp|P62197|PRS8_PIG RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName:
           Full=Proteasome subunit p45; AltName: Full=Tat-binding
           protein homolog 10; Short=TBP10; AltName: Full=p45/SUG
 gi|49065782|sp|P62198|PRS8_RAT RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName:
           Full=Proteasome subunit p45; AltName: Full=Thyroid
           hormone receptor-interacting protein 1; Short=TRIP1;
           AltName: Full=p45/SUG
 gi|49065819|sp|P62195|PRS8_HUMAN RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName:
           Full=Proteasome subunit p45; AltName: Full=Thyroid
           hormone receptor-interacting protein 1; Short=TRIP1;
           AltName: Full=p45/SUG
 gi|49065820|sp|P62196|PRS8_MOUSE RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName:
           Full=Proteasome subunit p45; AltName: Full=p45/SUG;
           Short=mSUG1
 gi|68630545|sp|P62194|PRS8_BOVIN RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName:
           Full=Proteasome subunit p45; AltName: Full=p45/SUG
 gi|1165125|emb|CAA90961.1| mSUG1 protein [Mus musculus]
 gi|1262433|emb|CAA61863.1| 26S protease subunit [Sus scrofa]
 gi|1395177|dbj|BAA11938.1| proteasomal ATPase (rat SUG1) [Rattus norvegicus]
 gi|2564003|dbj|BAA22933.1| proteasome p45/SUG [Rattus norvegicus]
 gi|3193258|gb|AAC19266.1| proteasome subunit SUG1 [Bos taurus]
 gi|12804959|gb|AAH01932.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Homo
           sapiens]
 gi|32425744|gb|AAH02367.3| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Homo
           sapiens]
 gi|37231718|gb|AAH58462.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Rattus
           norvegicus]
 gi|74183188|dbj|BAE22539.1| unnamed protein product [Mus musculus]
 gi|74216976|dbj|BAE26599.1| unnamed protein product [Mus musculus]
 gi|90075232|dbj|BAE87296.1| unnamed protein product [Macaca fascicularis]
 gi|119614678|gb|EAW94272.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
           CRA_c [Homo sapiens]
 gi|123242266|emb|CAM23783.1| protease (prosome, macropain) 26S subunit, ATPase 5 [Mus musculus]
 gi|123982762|gb|ABM83122.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic
           construct]
 gi|123997431|gb|ABM86317.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic
           construct]
 gi|148702335|gb|EDL34282.1| protease (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_a
           [Mus musculus]
 gi|148877455|gb|AAI46196.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Bos taurus]
 gi|158257188|dbj|BAF84567.1| unnamed protein product [Homo sapiens]
 gi|208967154|dbj|BAG73591.1| proteasome (prosome, macropain) 26S subunit ATPase 5 [synthetic
           construct]
 gi|296476226|gb|DAA18341.1| 26S protease regulatory subunit 8 [Bos taurus]
          Length = 406

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 233


>gi|312596881|ref|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 [Homo sapiens]
 gi|114669874|ref|XP_001149920.1| PREDICTED: similar to mSUG1 protein isoform 9 [Pan troglodytes]
 gi|297273393|ref|XP_002800611.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 3 [Macaca
           mulatta]
 gi|332848822|ref|XP_001149845.2| PREDICTED: 26S protease regulatory subunit 8 isoform 8 [Pan
           troglodytes]
 gi|1262435|emb|CAA61864.1| put. 26S protease subunit [Sus scrofa]
 gi|119614676|gb|EAW94270.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
           CRA_b [Homo sapiens]
 gi|119614677|gb|EAW94271.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
           CRA_b [Homo sapiens]
 gi|158254952|dbj|BAF83447.1| unnamed protein product [Homo sapiens]
          Length = 398

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 225


>gi|976227|dbj|BAA07919.1| 26S proteasome subunit p45 [Homo sapiens]
 gi|1096205|prf||2111282A 26S proteasome
          Length = 406

 Score = 39.0 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 233


>gi|332865235|ref|XP_001154105.2| PREDICTED: fidgetin-like 1 isoform 5 [Pan troglodytes]
 gi|332865237|ref|XP_003339446.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865239|ref|XP_003318482.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865241|ref|XP_003339447.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865243|ref|XP_003318484.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865245|ref|XP_527740.3| PREDICTED: fidgetin-like 1 isoform 6 [Pan troglodytes]
 gi|332865247|ref|XP_001153855.2| PREDICTED: fidgetin-like 1 isoform 2 [Pan troglodytes]
 gi|332865249|ref|XP_003339448.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865251|ref|XP_003318486.1| PREDICTED: fidgetin-like 1 [Pan troglodytes]
 gi|332865253|ref|XP_001153978.2| PREDICTED: fidgetin-like 1 isoform 3 [Pan troglodytes]
          Length = 674

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 433 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 472


>gi|332251814|ref|XP_003275045.1| PREDICTED: fidgetin-like protein 1 isoform 1 [Nomascus leucogenys]
 gi|332251816|ref|XP_003275046.1| PREDICTED: fidgetin-like protein 1 isoform 2 [Nomascus leucogenys]
 gi|332251818|ref|XP_003275047.1| PREDICTED: fidgetin-like protein 1 isoform 3 [Nomascus leucogenys]
 gi|332251820|ref|XP_003275048.1| PREDICTED: fidgetin-like protein 1 isoform 4 [Nomascus leucogenys]
 gi|332251822|ref|XP_003275049.1| PREDICTED: fidgetin-like protein 1 isoform 5 [Nomascus leucogenys]
 gi|332251824|ref|XP_003275050.1| PREDICTED: fidgetin-like protein 1 isoform 6 [Nomascus leucogenys]
          Length = 674

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 433 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 472


>gi|330810442|ref|YP_004354904.1| Replication-associated recombination protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378550|gb|AEA69900.1| Replication-associated recombination protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 442

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 22/150 (14%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + ++ S +  F  ++  L  +    +   + +  
Sbjct: 41  EALEQGALHSMIFWGPPGVGKTTLARLLAEVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 99

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 100 AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 155

Query: 163 KAATVVKISLPDDDFLEKVIVKMF-ADRQI 191
             A V  +   D+  + K++ +    +R +
Sbjct: 156 --ARVYVLKSLDEAAMRKLVHRALTEERGL 183


>gi|320589257|gb|EFX01719.1| proteasome regulatory particle subunit [Grosmannia clavigera
           kw1407]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGVLLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|320540338|ref|ZP_08039990.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Serratia symbiotica str. Tucson]
 gi|320029658|gb|EFW11685.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Serratia symbiotica str. Tucson]
          Length = 423

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 31/122 (25%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHS------------------AIEQAVRLID 57
           +     + + E      P  +    DD ++                        A   ++
Sbjct: 53  KDVAPHRERSE---LPTPHEIRQHLDDYVIGQEQAKKVLAVAVYNHYKRLRNSDASNGVE 109

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
                    ++L+GP+GSGK+ LA   +      RF ++  ++      T    + ED++
Sbjct: 110 L----GKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLTEAGYVGEDVE 159

Query: 118 LL 119
            +
Sbjct: 160 NI 161


>gi|307168241|gb|EFN61467.1| Nuclear valosin-containing protein-like [Camponotus floridanus]
          Length = 943

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 692 VLLCGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGESEKAV 737


>gi|297680434|ref|XP_002817996.1| PREDICTED: fidgetin-like protein 1-like isoform 1 [Pongo abelii]
 gi|297680436|ref|XP_002817997.1| PREDICTED: fidgetin-like protein 1-like isoform 2 [Pongo abelii]
          Length = 674

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 433 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 472


>gi|297288317|ref|XP_002803322.1| PREDICTED: fidgetin-like protein 1-like isoform 6 [Macaca mulatta]
 gi|297288319|ref|XP_002803323.1| PREDICTED: fidgetin-like protein 1-like isoform 7 [Macaca mulatta]
          Length = 563

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 322 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 361


>gi|297288307|ref|XP_001083559.2| PREDICTED: fidgetin-like protein 1-like isoform 1 [Macaca mulatta]
 gi|297288309|ref|XP_002803318.1| PREDICTED: fidgetin-like protein 1-like isoform 2 [Macaca mulatta]
 gi|297288311|ref|XP_002803319.1| PREDICTED: fidgetin-like protein 1-like isoform 3 [Macaca mulatta]
 gi|297288313|ref|XP_002803320.1| PREDICTED: fidgetin-like protein 1-like isoform 4 [Macaca mulatta]
 gi|297288315|ref|XP_002803321.1| PREDICTED: fidgetin-like protein 1-like isoform 5 [Macaca mulatta]
          Length = 674

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 433 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 472


>gi|296209257|ref|XP_002751459.1| PREDICTED: fidgetin-like protein 1-like [Callithrix jacchus]
          Length = 674

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 433 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 472


>gi|296454485|ref|YP_003661628.1| vesicle-fusing ATPase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183916|gb|ADH00798.1| Vesicle-fusing ATPase [Bifidobacterium longum subsp. longum JDM301]
          Length = 402

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 22/95 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + VI  G  G+GK+ LA I ++ + +  +     ++                 +   D
Sbjct: 186 PIKGVIFTGAPGTGKTHLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQAD 245

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141
            R  +  ++ID +  +        N  +     L+
Sbjct: 246 KRAIIFFDEIDSIASSRE------NDTNGVGKRLV 274


>gi|296116064|ref|ZP_06834684.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977418|gb|EFG84176.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC
           23769]
          Length = 431

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 20/144 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA I + +S     + S +   +  +     +   L           
Sbjct: 50  MIFWGPPGTGKTTLARILAARSGMAFEQISAVMSGMADLKKALARAQGLRQ--QGQTKGM 107

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T   S+ +    L SR +   + +++ 
Sbjct: 108 VLFVDEIHRWNKAQQDALLPYVEDGTIVLIGATTENPSFELNRA-LASRAQVMVLERLAT 166

Query: 173 PDDDFLEKVIVKMFADRQIFIDKK 196
            D   L  ++ +  A     +  +
Sbjct: 167 HD---LSILLERAEAHLGHTLPLE 187


>gi|301764501|ref|XP_002917669.1| PREDICTED: fidgetin-like protein 1-like [Ailuropoda melanoleuca]
 gi|281343445|gb|EFB19029.1| hypothetical protein PANDA_006009 [Ailuropoda melanoleuca]
          Length = 676

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 435 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 474


>gi|240103029|ref|YP_002959338.1| ATPase of the AAA family [Thermococcus gammatolerans EJ3]
 gi|239910583|gb|ACS33474.1| ATPase of the AAA family [Thermococcus gammatolerans EJ3]
          Length = 400

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97
           P + ++L GP G+GK+ LA+  +    +T FS  A
Sbjct: 151 PWKGILLFGPPGTGKTLLASAAAGSLNATFFSVKA 185


>gi|261195270|ref|XP_002624039.1| mitochondrial AAA ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239587911|gb|EEQ70554.1| mitochondrial AAA ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239610599|gb|EEQ87586.1| mitochondrial AAA ATPase [Ajellomyces dermatitidis ER-3]
 gi|327348966|gb|EGE77823.1| mitochondrial AAA ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 973

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 702 PGLLLYGPPGTGKTMLAKAVARQSGATVLE 731


>gi|224119534|ref|XP_002318098.1| predicted protein [Populus trichocarpa]
 gi|222858771|gb|EEE96318.1| predicted protein [Populus trichocarpa]
          Length = 965

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 57/215 (26%)

Query: 67  VIL-VGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
           + L  GP G+GK+  + I++         +       + +   + +   ++++D +    
Sbjct: 328 LYLFHGPRGTGKTSASRIFAAALNCLSREYKPCGVCRECVAFFSGRSRDVKEVDSMR--- 384

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVS------------------WGVCLPDLCSRLKAA 165
                 IN       SL+  A   P+S                  WG  L  L + L   
Sbjct: 385 ------INRAKGI-RSLIKNASMPPISSRFKVFIVDECHLLHGETWGTVLNSLEN-LSQN 436

Query: 166 TVVKISLPD---------------------DDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
            V  +  P+                     D  +   +  +  +  +  D+    +I  +
Sbjct: 437 VVFVMITPELDMLPRSAVSRSQKYHFPKIKDADIAGRLRNICVEEDLDFDQVALDFIAAK 496

Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239
              S          +D L+L  G  IT SLA E++
Sbjct: 497 ---SSGSLRDAEIMLDQLSL-LGKRITMSLAHELI 527


>gi|315231153|ref|YP_004071589.1| hypothetical protein TERMP_01391 [Thermococcus barophilus MP]
 gi|315184181|gb|ADT84366.1| hypothetical protein TERMP_01391 [Thermococcus barophilus MP]
          Length = 393

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R ++L GP G+GK+ LA+  +    +T F+  A S+
Sbjct: 144 PWRGILLFGPPGTGKTLLASAAAGSLNATFFNVKASSV 181


>gi|197305085|pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
           Complex With Adp
 gi|197305086|pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
           Complex With Adp
          Length = 357

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155


>gi|193786555|dbj|BAG51338.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 433 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 472


>gi|149704647|ref|XP_001498326.1| PREDICTED: fidgetin-like 1 [Equus caballus]
          Length = 677

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 436 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 475


>gi|148708698|gb|EDL40645.1| fidgetin-like 1, isoform CRA_b [Mus musculus]
          Length = 686

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 445 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 484


>gi|148708697|gb|EDL40644.1| fidgetin-like 1, isoform CRA_a [Mus musculus]
          Length = 701

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 460 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 499


>gi|114669876|ref|XP_001149010.1| PREDICTED: similar to mSUG1 protein isoform 1 [Pan troglodytes]
          Length = 425

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 205 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 252


>gi|114613357|ref|XP_001153794.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 563

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 322 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 361


>gi|114613355|ref|XP_001154038.1| PREDICTED: similar to Fidgetin-like 1 isoform 4 [Pan troglodytes]
          Length = 674

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 433 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 472


>gi|26353602|dbj|BAC40431.1| unnamed protein product [Mus musculus]
          Length = 683

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 442 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 481


>gi|21740068|emb|CAD39050.1| hypothetical protein [Homo sapiens]
          Length = 563

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 322 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 361


>gi|118353063|ref|XP_001009802.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89291569|gb|EAR89557.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 1060

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           R V+L GP G GK+ LA   +++     FS     + +  I   +  + +  +  
Sbjct: 809 RGVLLYGPPGCGKTYLAKATANELGLNFFSVKGPEILNKYIGASEQAVRDVFEKA 863


>gi|10442029|gb|AAG17290.1|AF263914_1 fidgetin-like 1 [Mus musculus]
          Length = 683

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 442 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 481


>gi|73981824|ref|XP_540351.2| PREDICTED: similar to fidgetin-like 1 [Canis familiaris]
          Length = 689

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 448 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 487


>gi|58865396|ref|NP_001011913.1| fidgetin-like protein 1 [Rattus norvegicus]
 gi|81911001|sp|Q6GX84|FIGL1_RAT RecName: Full=Fidgetin-like protein 1
 gi|48686585|gb|AAT46048.1| fidgetin-like 1 [Rattus norvegicus]
 gi|48686587|gb|AAT46049.1| fidgetin-like 1 [Rattus norvegicus]
 gi|149016958|gb|EDL76063.1| rCG24478 [Rattus norvegicus]
          Length = 677

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 436 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 475


>gi|10434929|dbj|BAB14426.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 433 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 472


>gi|31560300|ref|NP_068691.2| fidgetin-like protein 1 [Mus musculus]
 gi|254039741|ref|NP_001156831.1| fidgetin-like protein 1 [Mus musculus]
 gi|254039743|ref|NP_001156832.1| fidgetin-like protein 1 [Mus musculus]
 gi|81913480|sp|Q8BPY9|FIGL1_MOUSE RecName: Full=Fidgetin-like protein 1
 gi|26342268|dbj|BAC34796.1| unnamed protein product [Mus musculus]
 gi|30354687|gb|AAH51942.1| Fidgetin-like 1 [Mus musculus]
 gi|30851350|gb|AAH52415.1| Fidgetin-like 1 [Mus musculus]
 gi|56205315|emb|CAI25376.1| fidgetin-like 1 [Mus musculus]
 gi|74180683|dbj|BAE25569.1| unnamed protein product [Mus musculus]
 gi|148708699|gb|EDL40646.1| fidgetin-like 1, isoform CRA_c [Mus musculus]
          Length = 683

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 442 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 481


>gi|2564007|dbj|BAA22935.1| proteasome p45/SUG [Rattus norvegicus]
          Length = 374

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 154 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 201


>gi|31742536|ref|NP_071399.2| fidgetin-like protein 1 [Homo sapiens]
 gi|112789543|ref|NP_001036227.1| fidgetin-like protein 1 [Homo sapiens]
 gi|158563967|sp|Q6PIW4|FIGL1_HUMAN RecName: Full=Fidgetin-like protein 1
 gi|30354010|gb|AAH51867.1| Fidgetin-like 1 [Homo sapiens]
 gi|41393465|gb|AAS01996.1| unknown [Homo sapiens]
 gi|51094648|gb|EAL23899.1| fidgetin-like 1 [Homo sapiens]
 gi|119581379|gb|EAW60975.1| fidgetin-like 1, isoform CRA_a [Homo sapiens]
 gi|119581380|gb|EAW60976.1| fidgetin-like 1, isoform CRA_a [Homo sapiens]
 gi|190690423|gb|ACE86986.1| fidgetin-like 1 protein [synthetic construct]
          Length = 674

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 433 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 472


>gi|293348964|ref|XP_001065624.2| PREDICTED: rCG50526-like [Rattus norvegicus]
          Length = 595

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 43/178 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108
           P R V+  GP G GK+ L    + +  +T                 A+ L +     R  
Sbjct: 370 PPRTVLFFGPRGCGKALLGRCLATRLGATLLRLRGAGLATSGAVEGARLLQAAFAAARCR 429

Query: 109 --KPVLLEDIDLL--DFNDTQ-----LFHIINS---IHQYDSSLLMTARTFPVSWGVCLP 156
               +L+ ++D L    +D       L   ++           ++ T             
Sbjct: 430 PPAVLLISELDALLPARDDGASLRAPLLTCLDGGCGARADGVLVVGTTSRPAAL------ 483

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           D  +R + A    ++LPD     +++ +  A +   +            ER L    +
Sbjct: 484 DEATRRRFALRFYVALPDGAARGQILQRALAQQGCVLS-----------ERELAALVQ 530


>gi|294013345|ref|YP_003546805.1| putative ATPase [Sphingobium japonicum UT26S]
 gi|292676675|dbj|BAI98193.1| putative ATPase [Sphingobium japonicum UT26S]
          Length = 484

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-- 103
             +   AV L+D      +R+++  G SGSGKS L     ++S +     +         
Sbjct: 9   SDSNGNAV-LVDVEELLATRLLV-QGNSGSGKSHLLRRLLEESAALVQQVVIDPEGDFVT 66

Query: 104 LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
           L D    V++   D  D+N+ ++  +   I ++ +S++++
Sbjct: 67  LADEYGHVVI---DAGDYNEREIVKMAMRIREHRASVVLS 103


>gi|255088145|ref|XP_002505995.1| hypothetical protein MICPUN_106506 [Micromonas sp. RCC299]
 gi|226521266|gb|ACO67253.1| hypothetical protein MICPUN_106506 [Micromonas sp. RCC299]
          Length = 718

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 48/201 (23%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111
           +LVGP G+GK+ LA   + ++    FS  A     + +                     V
Sbjct: 288 LLVGPPGTGKTLLAKAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIV 347

Query: 112 LLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
            +++ID +           ND       QL   ++        +++ A   P      L 
Sbjct: 348 FIDEIDAVGRQRGSGMGGGNDEREQTINQLLTEMDGFEGNTGVIVLAATNRPDVLDSAL- 406

Query: 157 DLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMER-SLVF 211
                L+       V + LPD     +++      R   I K +    + +R    S   
Sbjct: 407 -----LRPGRFDRQVTVDLPDVAGRIRILKVHA--RGKTIGKDVDFDKVARRTPGFSGAA 459

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
            + L   ++  A L+    +T
Sbjct: 460 LQNL---LNEAAILAARRDLT 477


>gi|295672730|ref|XP_002796911.1| 26S protease regulatory subunit [Paracoccidioides brasiliensis
           Pb01]
 gi|226282283|gb|EEH37849.1| 26S protease regulatory subunit [Paracoccidioides brasiliensis
           Pb01]
          Length = 354

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 229

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 230 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 289

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +++    +   + I+ ++           
Sbjct: 290 DPAL------LRAGRLDRKIEIPLPNEVGRLEILKIHAS--GVAIEGEI----------D 331

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 332 FESIVKMSDGLNGADLRN 349


>gi|222148826|ref|YP_002549783.1| recombination factor protein RarA [Agrobacterium vitis S4]
 gi|221735812|gb|ACM36775.1| ATPase AAA family protein [Agrobacterium vitis S4]
          Length = 435

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 64/182 (35%), Gaps = 28/182 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     +I  GP G+GK+ +A + S ++     + S I   +  +              
Sbjct: 49  ASGSLGSMIFWGPPGTGKTTVARLLSGEADLAFEQISAIFSGVADLKRVFEGA----RAR 104

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
            +    T LF    H  N           +  + +L+  T              L SR  
Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA---LLSR-- 159

Query: 164 AATVVKISLPDDDFLEKVIVKMFA--DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
            A V+     D++ +E ++ +  A  ++ + +D+     +++  +     A  L +++  
Sbjct: 160 -ARVLTFKPHDEESIETLLKRAEATEEKPLPLDEPARTSLIRMADGDGRAALTLAEEVWR 218

Query: 222 LA 223
            A
Sbjct: 219 AA 220


>gi|195392383|ref|XP_002054837.1| GJ24660 [Drosophila virilis]
 gi|229559931|sp|B4M0H8|SPAST_DROVI RecName: Full=Spastin
 gi|194152923|gb|EDW68357.1| GJ24660 [Drosophila virilis]
          Length = 769

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++
Sbjct: 526 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLV 575


>gi|156326605|ref|XP_001618654.1| hypothetical protein NEMVEDRAFT_v1g2803 [Nematostella vectensis]
 gi|156199720|gb|EDO26554.1| predicted protein [Nematostella vectensis]
          Length = 337

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G GK+ LA   +  + +     +        +    P ++ D+  L 
Sbjct: 171 PPRGVLLYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL-GEGPRMVRDVFRLA 227


>gi|150006968|ref|YP_001301711.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|150007366|ref|YP_001302109.1| putative transposase [Parabacteroides distasonis ATCC 8503]
 gi|150007389|ref|YP_001302132.1| putative transposase [Parabacteroides distasonis ATCC 8503]
 gi|150008740|ref|YP_001303483.1| putative transposase [Parabacteroides distasonis ATCC 8503]
 gi|150010375|ref|YP_001305118.1| putative transposase [Parabacteroides distasonis ATCC 8503]
 gi|150010461|ref|YP_001305204.1| putative transposase [Parabacteroides distasonis ATCC 8503]
 gi|149935392|gb|ABR42089.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|149935790|gb|ABR42487.1| putative transposase [Parabacteroides distasonis ATCC 8503]
 gi|149935813|gb|ABR42510.1| putative transposase [Parabacteroides distasonis ATCC 8503]
 gi|149937164|gb|ABR43861.1| putative transposase [Parabacteroides distasonis ATCC 8503]
 gi|149938799|gb|ABR45496.1| putative transposase [Parabacteroides distasonis ATCC 8503]
 gi|149938885|gb|ABR45582.1| putative transposase [Parabacteroides distasonis ATCC 8503]
          Length = 251

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 24/116 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------VLL 113
            R ++L G  G+GK+ +A     K+    F+ +  S+  +L   R+           +  
Sbjct: 101 GRNIVLYGNPGTGKTHIATALGIKACQQDFTVLFTSVPVLLTQIREAKSAKTLRALQLRF 160

Query: 114 EDIDLLDFND-----------TQLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           E  DL+  ++             LF H+  S+     + ++T       W   + D
Sbjct: 161 EKYDLVICDEFGYVSCDKEGGELLFNHL--SLRAGKKATIITTNLAFNRWNEIIKD 214


>gi|149003110|ref|ZP_01828019.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147758851|gb|EDK65847.1| chromosomal replication initiation protein [Streptococcus
           pneumoniae SP14-BS69]
          Length = 188

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 160 SR-LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
           SR         I+ PD +    ++                 Y+  + + ++   E  ++ 
Sbjct: 2   SRVFSWGLTQTITPPDFETRIAILQSKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAIND 61

Query: 219 MDNLALSRG-MGITRSLAAEVLKETQQ 244
           +  +A  +    IT  +AAE ++  +Q
Sbjct: 62  ITLIARVKKIKDITIDIAAEAIRARKQ 88


>gi|62087652|dbj|BAD92273.1| proteasome 26S ATPase subunit 5 variant [Homo sapiens]
          Length = 345

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 229


>gi|21410100|gb|AAH30840.1| Psmc5 protein [Mus musculus]
 gi|148702337|gb|EDL34284.1| protease (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_c
           [Mus musculus]
          Length = 348

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 233


>gi|74218854|dbj|BAE37827.1| unnamed protein product [Mus musculus]
          Length = 748

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  I   +
Sbjct: 498 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAE 553

Query: 110 PVL 112
            ++
Sbjct: 554 KII 556


>gi|15238774|ref|NP_200166.1| MSP1 protein, putative / intramitochondrial sorting protein,
           putative [Arabidopsis thaliana]
 gi|9759193|dbj|BAB09730.1| 26S proteasome regulatory particle chain RPT6-like protein
           [Arabidopsis thaliana]
 gi|16604478|gb|AAL24245.1| AT5g53540/MNC6_8 [Arabidopsis thaliana]
 gi|27363282|gb|AAO11560.1| At5g53540/MNC6_8 [Arabidopsis thaliana]
 gi|332008991|gb|AED96374.1| P-loop containing nucleoside triphosphate hydrolase-like protein
           [Arabidopsis thaliana]
          Length = 403

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 121 PQKGVLLYGPPGTGKTMLAKAIARESEAVFIN 152


>gi|134299288|ref|YP_001112784.1| recombination factor protein RarA [Desulfotomaculum reducens MI-1]
 gi|134051988|gb|ABO49959.1| Recombination protein MgsA [Desulfotomaculum reducens MI-1]
          Length = 438

 Score = 39.0 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 28/142 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT--------------RKP 110
             +IL GP GSGK+ LA I S+ + +      A S     I T              R  
Sbjct: 51  GSIILYGPPGSGKTTLATIISEMTEANFVKINAVSAGVAEIRTEIKKARDNLNFYGKRTI 110

Query: 111 VLLEDIDLL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAAT 166
             +++I  L        L        +     L+  T              L SR   + 
Sbjct: 111 FFIDEIHSLKRGAQQDCLL----EAVEKGEVTLIGATTENPYFELNGA---LLSR---SR 160

Query: 167 VVKISLPDDDFLEKVIVKMFAD 188
           + +++   +D L +++ +   D
Sbjct: 161 IFQLAEHTEDDLYRLVQRALKD 182


>gi|328955565|ref|YP_004372898.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Coriobacterium
           glomerans PW2]
 gi|328455889|gb|AEB07083.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Coriobacterium
           glomerans PW2]
          Length = 328

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 67/185 (36%), Gaps = 31/185 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------KSLDSILIDTRKPV-LLE 114
            V+ +VGP+G GKS +A++ +   RS   S  A          +        R P+ L++
Sbjct: 12  PVIAIVGPTGVGKSHVADLVAAAMRSEVISADAMQVYRGMDIGTAKMPAAQRRAPLRLID 71

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
            +D  +     L+       Q+   LL       V  G  L      ++AA    +  P 
Sbjct: 72  IVDPTESYSAALYQ--KDARQHIERLLADGSVPVVCGGTGLY-----VRAALDDCVFPPG 124

Query: 175 D--DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE--------KLVDKMDN-LA 223
           +  D   +    + A +    D+ +   + +R   S +           + ++ +D  ++
Sbjct: 125 EKGDRRRRRYEALAARKG---DQAVYDLLARRDPDSALAIHPHNVRRVIRALEMLDQGVS 181

Query: 224 LSRGM 228
            +   
Sbjct: 182 YAERR 186


>gi|325182701|emb|CCA17155.1| 26S proteasome subunit 7like protein putative [Albugo laibachii
           Nc14]
          Length = 438

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 212 PPKGVLLYGPPGTGKTLSARAVANRTDACFIRVIGSELVQKYVGEGGRLVRE 263


>gi|317120983|ref|YP_004100986.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           marianensis DSM 12885]
 gi|315590963|gb|ADU50259.1| membrane protease FtsH catalytic subunit [Thermaerobacter
           marianensis DSM 12885]
          Length = 615

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 61/197 (30%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ +A   + ++                     S +    +    +    
Sbjct: 195 VLLYGPPGTGKTHMARAVAGEAGVPFYYISGSDFVEMFVGVGASRVRDLFEQAKRNAPAI 254

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +               +  L  +   ++     +  ++M A   P      L
Sbjct: 255 VFIDEIDAVGRQRGAGYGGGHDEREQTLNQLLVEMDGFGTNEGIIVMAATNRPDVLDPAL 314

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + I  PD    E ++      + +  D  L   ++ R       A
Sbjct: 315 ------LRPGRFDRQIVIDRPDLVAREAILKVHTRSKPLAPDVDLG--LLARRTPGFTGA 366

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 367 -DLENLVNEAALLAARR 382


>gi|302784790|ref|XP_002974167.1| hypothetical protein SELMODRAFT_10835 [Selaginella
          moellendorffii]
 gi|300158499|gb|EFJ25122.1| hypothetical protein SELMODRAFT_10835 [Selaginella
          moellendorffii]
          Length = 452

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 29 FFSFPRCLGISRDDLLVHSAIE--QAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIW 84
            +      ++  DL V ++        L+     +  P  +  ++GPSGSGKS L +  
Sbjct: 29 PEAMDVSARLAWRDLFVTASNARGDVQVLLHRLSGYAEPGNITAIMGPSGSGKSTLLDTL 88

Query: 85 SDK 87
          + +
Sbjct: 89 AGR 91


>gi|261334863|emb|CBH17857.1| ATPase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 652

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 47 SAIEQAVRLIDS-WPSWPSRV----VILVGPSGSGKSCLANIWSDKSRSTRFS 94
          SA E A  LI     +WP       ++L GPSG+GKS L    ++K R+  F 
Sbjct: 30 SAFEHARDLICGILANWPYPSQAVSLLLCGPSGNGKSYLVRAAAEKVRTQDFH 82



 Score = 36.3 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           PS  V+L GP G+GK+ LA + + +  ++  
Sbjct: 396 PSTGVLLYGPPGTGKTMLARVIATELNASFI 426


>gi|229152603|ref|ZP_04280792.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550]
 gi|228630864|gb|EEK87504.1| hypothetical protein bcere0011_41380 [Bacillus cereus m1550]
          Length = 476

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 90  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 149

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 150 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 198

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            ++ +   + +   D++       + +  +   +        +  A   ++         
Sbjct: 199 TEEDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTT 258

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 259 DDQAA-----EITLEIAEECLQK 276


>gi|255609009|ref|XP_002538985.1| werner helicase interacting protein, putative [Ricinus communis]
 gi|223509400|gb|EEF23399.1| werner helicase interacting protein, putative [Ricinus communis]
          Length = 109

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++ S     +IL GP G GK+ LA + +  + +    
Sbjct: 42 RAFESGKLPSMILWGPPGVGKTTLARLIAQTADAEFVP 79


>gi|124514183|gb|EAY55698.1| RecA protein [Leptospirillum rubarum]
          Length = 360

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 21/129 (16%)

Query: 19  DQPKNKEEQLFFSFPRCL-----------GISRD----DLLVHSAIEQAVRLIDSWPSWP 63
            + +++  Q                     + +D    ++ V  +   A+ +      +P
Sbjct: 2   AEERDQARQKSLDLAVSQIEKQFGKGSIMRLGKDQVPQNVPVIPSGSLALDIALGIGGYP 61

Query: 64  SRVVI-LVGPSGSGKSCLA-NIWSDKSRSTRFSNI--AKSLDSILIDTRKPVLLED--ID 117
              V+ L GP  SGK+ LA +  S+  ++   +    A+    +    R  V  ED  I 
Sbjct: 62  RGRVVELYGPESSGKTTLALHAISEVHKAGGVAAFIDAEHALDVTYAKRLGVRTEDLLIA 121

Query: 118 LLDFNDTQL 126
             D  +  L
Sbjct: 122 QPDTGEQAL 130


>gi|116253705|ref|YP_769543.1| cell division protein FtsH [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258353|emb|CAK09455.1| putative cell division protein FtsH [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 643

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    F+        + +                   
Sbjct: 192 RGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 251

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +            D  +  L  +   ++     +  +L+ A   P     
Sbjct: 252 CIIFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDP 311

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    E+++      R + +   +   I+ R      
Sbjct: 312 AL------LRPGRFDRQVVVPNPDIVGRERILKVHA--RNVPLAPNVDLKILARGTPGFS 363

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L++ ++  AL     
Sbjct: 364 GA-DLMNLVNEAALMAARR 381


>gi|50344836|ref|NP_001002091.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1b [Danio
           rerio]
 gi|48734936|gb|AAH71538.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1b [Danio
           rerio]
 gi|55251319|emb|CAH68890.1| novel protein similar to proteasome (prosome, macropain) 26S
           subunit ATPase 1 (psmc1) [Danio rerio]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|72383277|ref|YP_292632.1| recombination factor protein RarA/unknown domain fusion protein
           [Prochlorococcus marinus str. NATL2A]
 gi|72003127|gb|AAZ58929.1| Recombination protein MgsA [Prochlorococcus marinus str. NATL2A]
          Length = 734

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +  + S      A       + +     ++ ++      T L
Sbjct: 57  LLLYGPPGVGKTTLARIIALNTLSHFSVVNAALAGIKDLRSEIESAIDRLNKFGKR-TIL 115

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N+          +  +  L+ A T    + V    L SR   + + +++  +
Sbjct: 116 FIDEVHRFNTAQQDALLPWVENGTLTLIGATTENPYFEVNKA-LVSR---SRLFRLNSLN 171

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAA 199
              L +++ +   D++     KL  
Sbjct: 172 SKALHQLLQRALNDKKRGYGLKLIN 196


>gi|329946416|ref|ZP_08293983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328527392|gb|EGF54390.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +             A +    + +  + +LL+ I   D +
Sbjct: 123 ILLLGPTGTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGD 180


>gi|325964694|ref|YP_004242600.1| ATP-dependent 26S proteasome regulatory subunit [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470781|gb|ADX74466.1| ATP-dependent 26S proteasome regulatory subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 463

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 37/151 (24%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDI 116
           R V+L GP G+GK+        +S       +A    + + +  +         V+LED 
Sbjct: 250 RGVLLYGPPGTGKTHTVRYLLGQSAGVTVILLAGGSLARISEAARMARALQPSIVVLEDC 309

Query: 117 DLLDFN-------DTQLFHIINSI----HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           DL+  +          LF +++++       D + ++T            PDL  R  A 
Sbjct: 310 DLIAEDRSFGHGPQPLLFEVLDAMDGLDQDADVAFILTTNR---------PDLLERALAQ 360

Query: 166 ------TVVKISLPDDDFLEKV-IVKMFADR 189
                   V+I LP     E+V ++++++ R
Sbjct: 361 RPGRVDLAVEIPLP--ALPERVELLRLYSRR 389


>gi|322699145|gb|EFY90909.1| 26S protease regulatory subunit 7 [Metarhizium acridum CQMa 102]
 gi|322708804|gb|EFZ00381.1| 26S protease regulatory subunit 7 [Metarhizium anisopliae ARSEF 23]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 215 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 266


>gi|320333578|ref|YP_004170289.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
 gi|319754867|gb|ADV66624.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
          Length = 624

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V+LVGP G+GK+ LA   + ++ +  FS  A     + +      +
Sbjct: 204 VLLVGPPGTGKTLLARAVAGEADAPFFSVSASEFMEMFVGVGASRV 249


>gi|315185392|gb|EFU19164.1| Recombination protein MgsA [Spirochaeta thermophila DSM 6578]
          Length = 741

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 30/173 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFND 123
           VI  GP G GK+ LA + ++ ++S   S  A       +       +E            
Sbjct: 56  VIFYGPPGCGKTTLARVIANHTKSAFLSLNAVLSGVQEVRA----AIEKARQEMAYHGRR 111

Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N           +  + +L+ A T    + V    L SR   + + ++ 
Sbjct: 112 TILFVDEVHRWNKAQQDALLPWVENGTVILIGATTQNPYFEVNSA-LISR---SRIFQLK 167

Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
                 L  +  +  +D  R      I +D+    +++   +         ++
Sbjct: 168 PLTRQHLRTIAERALSDPERGYGKYRIILDEDALEHLITVADGDARTLLSAIE 220


>gi|312215808|emb|CBX95760.1| similar to 26S protease regulatory subunit 7 [Leptosphaeria
           maculans]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|330915288|ref|XP_003296969.1| hypothetical protein PTT_07229 [Pyrenophora teres f. teres 0-1]
 gi|311330604|gb|EFQ94933.1| hypothetical protein PTT_07229 [Pyrenophora teres f. teres 0-1]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|331222455|ref|XP_003323901.1| suppressor protein of bem1/bed5 double mutants [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309302891|gb|EFP79482.1| suppressor protein of bem1/bed5 double mutants [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 421

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P R +++ GP G+GKS LA   + +++ST FS    + ++        + ++++D L  
Sbjct: 164 PWRGILMYGPPGTGKSYLAKAVATEAKSTFFSLFTMARENKP----AIIFIDEVDSLCG 218


>gi|307295569|ref|ZP_07575405.1| AAA ATPase central domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306878608|gb|EFN09828.1| AAA ATPase central domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ ++ + +D     RF  I+     +    +     +D        T L
Sbjct: 60  IILWGPPGTGKTTISRLLADAVG-MRFEPISAVFSGVADLKKVFAAAKD-HARRGEKTLL 117

Query: 127 F----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           F    H  N           +  +  L+  T              L SR   A V+ +  
Sbjct: 118 FVDEIHRFNRAQQDSFLPFVEDGTVTLVGATTENPSFELNAA---LLSR---AQVLILRR 171

Query: 173 PDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            D   LE+++ +     +R + +D      ++   +    F    V+ +
Sbjct: 172 LDAGALEQLLDRAEALTERPLPLDAAAREALLASADGDGRFLLNQVETL 220


>gi|298710322|emb|CBJ31942.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 647

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+  V+L GP G+GK+ LA   + ++ +T   
Sbjct: 297 PASGVLLFGPPGTGKTLLAKAAATETGATFIE 328


>gi|290562333|gb|ADD38563.1| 26S protease regulatory subunit 7 [Lepeophtheirus salmonis]
          Length = 434

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 45/146 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELARSK 268

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACIIFFDEIDAIGGARFDDGAGVDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDAL 328

Query: 148 ------PVSW----GVCLPDLCSRLK 163
                 P          LPDL  R+K
Sbjct: 329 DPALVRPGRLDRKIEFGLPDLEGRVK 354


>gi|302926371|ref|XP_003054283.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256735224|gb|EEU48570.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 215 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 266


>gi|227510039|ref|ZP_03940088.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190418|gb|EEI70485.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 245

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 21/71 (29%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           VV+++GPSGSGKS L                  +L+ +   T   V+++++D+ + N   
Sbjct: 32  VVVIIGPSGSGKSTLLR----------------TLNKLEEPTSGSVVIDNVDIANKNAN- 74

Query: 126 LFHIINSIHQY 136
               +N++ + 
Sbjct: 75  ----MNTVREN 81


>gi|227524182|ref|ZP_03954231.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus hilgardii ATCC 8290]
 gi|227088652|gb|EEI23964.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus hilgardii ATCC 8290]
          Length = 245

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 21/71 (29%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           VV+++GPSGSGKS L                  +L+ +   T   V+++++D+ + N   
Sbjct: 32  VVVIIGPSGSGKSTLLR----------------TLNKLEEPTSGSVVIDNVDIANKNAN- 74

Query: 126 LFHIINSIHQY 136
               +N++ + 
Sbjct: 75  ----MNTVREN 81


>gi|227512969|ref|ZP_03943018.1| amino acid ABC superfamily ATP binding cassette transporter, ABC
           protein [Lactobacillus buchneri ATCC 11577]
 gi|227083726|gb|EEI19038.1| amino acid ABC superfamily ATP binding cassette transporter, ABC
           protein [Lactobacillus buchneri ATCC 11577]
          Length = 245

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 21/71 (29%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           VV+++GPSGSGKS L                  +L+ +   T   V+++++D+ + N   
Sbjct: 32  VVVIIGPSGSGKSTLLR----------------TLNKLEEPTSGSVVIDNVDIANKNAN- 74

Query: 126 LFHIINSIHQY 136
               +N++ + 
Sbjct: 75  ----MNTVREN 81


>gi|295672343|ref|XP_002796718.1| 26S protease regulatory subunit 8 [Paracoccidioides brasiliensis
           Pb01]
 gi|225683273|gb|EEH21557.1| 26S protease regulatory subunit 7 [Paracoccidioides brasiliensis
           Pb03]
 gi|226283698|gb|EEH39264.1| 26S protease regulatory subunit 8 [Paracoccidioides brasiliensis
           Pb01]
 gi|226288250|gb|EEH43762.1| 26S protease regulatory subunit 8 [Paracoccidioides brasiliensis
           Pb18]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|225562323|gb|EEH10602.1| 26S protease regulatory subunit [Ajellomyces capsulatus G186AR]
 gi|325089508|gb|EGC42818.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus H88]
          Length = 392

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 169 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 228

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 229 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 288

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +++    +   + I+ ++           
Sbjct: 289 DPAL------LRAGRLDRKIEIPLPNEVGRLEILKIHAS--GVAIEGEI----------D 330

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 331 FESIVKMSDGLNGADLRN 348


>gi|198468333|ref|XP_001354666.2| GA10562 [Drosophila pseudoobscura pseudoobscura]
 gi|198146365|gb|EAL31721.2| GA10562 [Drosophila pseudoobscura pseudoobscura]
          Length = 532

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 24/88 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANI-WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P R ++L GP GSGK+ LA   +++      F NI  S+           +L        
Sbjct: 240 PWRSLLLHGPPGSGKTFLAKALYAETQGQVTFFNITASIMVSKWRGESEKIL-------- 291

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPV 149
               LFH             M AR  P 
Sbjct: 292 --RVLFH-------------MAARRAPS 304


>gi|189204227|ref|XP_001938449.1| 26S protease regulatory subunit 7 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187985548|gb|EDU51036.1| 26S protease regulatory subunit 7 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 438

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 213 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 264


>gi|185177972|pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177973|pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177974|pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177975|pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177976|pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177977|pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177978|pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177979|pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177980|pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177981|pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177982|pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177983|pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177984|pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
 gi|185177985|pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
          Length = 301

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 48  PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 104


>gi|163796934|ref|ZP_02190890.1| Peptidase M41, FtsH [alpha proteobacterium BAL199]
 gi|159177681|gb|EDP62232.1| Peptidase M41, FtsH [alpha proteobacterium BAL199]
          Length = 643

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111
           +LVGP G+GK+ LA   + ++    F+        + +                     +
Sbjct: 193 LLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCII 252

Query: 112 LLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLP 156
            +++ID +            D  +  L  +   ++     +  +L+ A   P      L 
Sbjct: 253 FIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDPAL- 311

Query: 157 DLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
            L   R     VV    P+ D L +  +     R++ +   +    + R       A  L
Sbjct: 312 -LRPGRFDRQIVV----PNPDILGREKILKVHMRKVPLGPDVEPRTIARGTPGFSGA-DL 365

Query: 216 VDKMDNLALSRGMG 229
            + ++  AL     
Sbjct: 366 ANLVNEAALLAARK 379


>gi|156063418|ref|XP_001597631.1| hypothetical protein SS1G_01827 [Sclerotinia sclerotiorum 1980]
 gi|154697161|gb|EDN96899.1| hypothetical protein SS1G_01827 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|154319207|ref|XP_001558921.1| 26S protease regulatory subunit 7 [Botryotinia fuckeliana B05.10]
 gi|150856986|gb|EDN32178.1| 26S protease regulatory subunit 7 [Botryotinia fuckeliana B05.10]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|39951877|ref|XP_363655.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145020575|gb|EDK04704.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|37590686|gb|AAH59266.1| Fign protein [Mus musculus]
          Length = 748

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  I   +
Sbjct: 498 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAE 553

Query: 110 PVL 112
            ++
Sbjct: 554 KII 556


>gi|332000025|ref|NP_001193643.1| fidgetin-like protein 1 [Bos taurus]
          Length = 677

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + ++ +T FS  A SL S
Sbjct: 436 PPKGILLFGPPGTGKTLIGKCIASQAGATFFSISASSLTS 475


>gi|552189|gb|AAA29520.1| cell division cycle ATPase [Plasmodium falciparum]
          Length = 709

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++ ++L GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 590 NKGILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKA 645


>gi|20088903|ref|NP_614978.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20090392|ref|NP_616467.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20090436|ref|NP_616511.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20090733|ref|NP_616808.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20090876|ref|NP_616951.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20091645|ref|NP_617720.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20092245|ref|NP_618320.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20092315|ref|NP_618390.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20092558|ref|NP_618633.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20092926|ref|NP_619001.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|20093314|ref|NP_619389.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19913745|gb|AAM03458.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19915401|gb|AAM04947.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19915450|gb|AAM04991.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19915788|gb|AAM05288.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19915950|gb|AAM05431.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19916813|gb|AAM06200.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19917480|gb|AAM06800.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19917560|gb|AAM06870.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19917831|gb|AAM07113.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19918237|gb|AAM07481.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19918673|gb|AAM07869.1| IstB helper protein [Methanosarcina acetivorans C2A]
          Length = 257

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 23/116 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIW----SDKSRSTRFSNIAKSLDSILIDTRKP-------- 110
              VV L GP G GKS LA       +    S  F+N    ++ + I  R+         
Sbjct: 102 SENVVFL-GPPGVGKSHLAIALGIEVAKAGISVYFTNTGNLIEKLKIANREGMLEKKLRD 160

Query: 111 ------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                 +++++I  L F++     LF +I+  ++  S++L T+      WG    D
Sbjct: 161 LMKYKVLIIDEIGYLPFDEEGAHCLFQLISRRYEKSSTIL-TSNKSYGEWGEIFKD 215


>gi|20089920|ref|NP_615995.1| IstB helper protein [Methanosarcina acetivorans C2A]
 gi|19914877|gb|AAM04475.1| IstB helper protein [Methanosarcina acetivorans C2A]
          Length = 257

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 23/116 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIW----SDKSRSTRFSNIAKSLDSILIDTRKP-------- 110
              VV L GP G GKS LA       +    S  F+N    ++ + I  R+         
Sbjct: 102 SENVVFL-GPPGVGKSHLAIALGIEVAKAGISVYFTNTGNLIEKLKIANREGMLEKKLRD 160

Query: 111 ------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                 +++++I  L F++     LF +I+  ++  S++L T+      WG    D
Sbjct: 161 LMKYKVLIIDEIGYLPFDEEGAHCLFQLISRRYEKSSTIL-TSNKSYGEWGEIFKD 215


>gi|23821982|sp|Q8PY58|PAN_METMA RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
          Length = 420

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L G  G+GK+ LA   + ++ +T    +   L    I     ++ E
Sbjct: 192 PPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVRE 243


>gi|11265294|pir||T49507 probable 26S proteasome regulatory particle chain RPT1 [imported] -
           Neurospora crassa
          Length = 439

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|5912498|emb|CAB56168.1| ISTB [Mycobacterium bovis]
          Length = 266

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 47/152 (30%)

Query: 30  FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           F F    G+ RD        D +                      V+ +GP+G+GK+ LA
Sbjct: 84  FDFEHARGLKRDTIAHLGTLDFITARDN-----------------VVFLGPAGTGKTHLA 126

Query: 82  ---NIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND 123
               I + ++        A    + L +                   ++++++  + F  
Sbjct: 127 VGLAIRACQAGHRVLFATAAEWVARLAEAHHAGRIYAELTRLCAYPLLVVDEVGYIPFEP 186

Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                 F ++ S     +SL++T+      WG
Sbjct: 187 EAANLFFQLV-SSRYERASLIVTSNKAFGRWG 217


>gi|116181620|ref|XP_001220659.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88185735|gb|EAQ93203.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 401

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|76787547|ref|YP_330532.1| recombination factor protein RarA [Streptococcus agalactiae A909]
 gi|77405039|ref|ZP_00782139.1| ATPase, AAA family [Streptococcus agalactiae H36B]
 gi|76562604|gb|ABA45188.1| ATPase, AAA family [Streptococcus agalactiae A909]
 gi|77176333|gb|EAO79102.1| ATPase, AAA family [Streptococcus agalactiae H36B]
          Length = 422

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +        +T      + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++K I    +D  R     + ID +   +I+      L  A   +D
Sbjct: 155 IKKAIQLAISDKERGFPFLVTIDDEALDFIITATNGDLRSAYNSLD 200


>gi|46107352|ref|XP_380735.1| hypothetical protein FG00559.1 [Gibberella zeae PH-1]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 215 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 266


>gi|310790696|gb|EFQ26229.1| 26S proteasome subunit P45 family protein [Glomerella graminicola
           M1.001]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|297796187|ref|XP_002865978.1| hypothetical protein ARALYDRAFT_495431 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311813|gb|EFH42237.1| hypothetical protein ARALYDRAFT_495431 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 402

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 121 PQKGVLLYGPPGTGKTMLAKAIARESEAVFIN 152


>gi|296454390|ref|YP_003661533.1| IstB domain-containing protein ATP-binding protein [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296183821|gb|ADH00703.1| IstB domain protein ATP-binding protein [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 235

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           ++L GP G+GKS LA      +          +   +L                  I   
Sbjct: 91  LVLYGPVGTGKSHLAIAIGRLACERGVPVRFFTATGLLMRLRRAQQENRLDRELASIGKA 150

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + +++++   L  ++     LF II+  ++   S++ T       WG  L D
Sbjct: 151 RLLIIDEFGYLPIDEEGSRLLFQIISDSYET-RSIIYTTNIEFSGWGRVLGD 201


>gi|317128203|ref|YP_004094485.1| Holliday junction DNA helicase RuvB [Bacillus cellulosilyticus DSM
           2522]
 gi|315473151|gb|ADU29754.1| Holliday junction DNA helicase RuvB [Bacillus cellulosilyticus DSM
           2522]
          Length = 334

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 41/196 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L+ I +++      +    +++           LE  D+L  ++   
Sbjct: 57  VLLYGPPGLGKTTLSMIIANEMNVQLRTTSGPAIERPGDLAAILTALEPGDVLFIDEI-- 114

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPDDDFL 178
            H +N   +    +L      P     CL       P   S RL       +        
Sbjct: 115 -HRLNRSVEE---VLY-----PAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGA---TTR 162

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK--------MDNLA---LSRG 227
             ++     DR   + +    Y       +     ++V++        +D+ A   ++R 
Sbjct: 163 AGMLSAPLRDRFGVVSR--LQY------YTHEELTEIVERTALVMNVEIDHEAAIEIARR 214

Query: 228 MGITRSLAAEVLKETQ 243
              T  +A  +L+  +
Sbjct: 215 SRGTPRIANRLLRRVR 230


>gi|301125838|ref|XP_002909803.1| 26S protease regulatory subunit 8 [Phytophthora infestans T30-4]
 gi|262104053|gb|EEY62105.1| 26S protease regulatory subunit 8 [Phytophthora infestans T30-4]
          Length = 326

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRE 229


>gi|301103434|ref|XP_002900803.1| 26S protease regulatory subunit 4 [Phytophthora infestans T30-4]
 gi|262101558|gb|EEY59610.1| 26S protease regulatory subunit 4 [Phytophthora infestans T30-4]
          Length = 445

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 223 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKLVRE 274


>gi|302414934|ref|XP_003005299.1| 26S protease regulatory subunit 7 [Verticillium albo-atrum
           VaMs.102]
 gi|261356368|gb|EEY18796.1| 26S protease regulatory subunit 7 [Verticillium albo-atrum
           VaMs.102]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|241206180|ref|YP_002977276.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860070|gb|ACS57737.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 648

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    F+        + +                   
Sbjct: 197 RGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 256

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +            D  +  L  +   ++     +  +L+ A   P     
Sbjct: 257 CIIFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDP 316

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    E+++      R + +   +   I+ R      
Sbjct: 317 AL------LRPGRFDRQVVVPNPDIVGRERILKVHA--RNVPLAPNVDLKILARGTPGFS 368

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L++ ++  AL     
Sbjct: 369 GA-DLMNLVNEAALMAARR 386


>gi|226323791|ref|ZP_03799309.1| hypothetical protein COPCOM_01566 [Coprococcus comes ATCC 27758]
 gi|225207975|gb|EEG90329.1| hypothetical protein COPCOM_01566 [Coprococcus comes ATCC 27758]
          Length = 271

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 20/116 (17%)

Query: 52  AVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDK-----------SRSTRFSNIAK 98
           A   +D+W       +  +  GP G+GKS +A   +++           + +T   +I  
Sbjct: 97  AKNYVDNWEKMKRNHIGCLFWGPVGTGKSYVAGCIANELLKREVTVKMTNFNTIIDDIFP 156

Query: 99  SLDSI----LIDTRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTF 147
             D       + + + ++++D+ +   ++  L   F +I+   +    L++T    
Sbjct: 157 LADKTEYINALASYQLLIIDDLGVERNSEYALGIVFSVIDRRIRSGRPLIITTNLP 212


>gi|195125639|ref|XP_002007285.1| GI12852 [Drosophila mojavensis]
 gi|193918894|gb|EDW17761.1| GI12852 [Drosophila mojavensis]
          Length = 307

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS V+ L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 59  PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 107


>gi|171684681|ref|XP_001907282.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942301|emb|CAP67953.1| unnamed protein product [Podospora anserina S mat+]
          Length = 390

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     +A ++    I     ++ E
Sbjct: 167 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVASAIVDKYIGESARLIRE 218


>gi|58000319|ref|YP_190217.1| IstB [Escherichia coli]
 gi|134044909|ref|YP_001102247.1| transposition protein IstB for insertion sequence IS1326 [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|134047265|ref|YP_001102027.1| transposition protein IstB for insertion sequence IS1326
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|165937930|ref|ZP_02226490.1| IstB protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|57903220|gb|AAQ75570.2| IstB [Escherichia coli]
 gi|133905184|gb|ABO41199.1| transposition protein IstB for insertion sequence IS1326
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|133905443|gb|ABO42205.1| transposition protein IstB for insertion sequence IS1326 [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165913953|gb|EDR32570.1| IstB protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|284923824|emb|CBG36922.1| putative transposase [Escherichia coli 042]
 gi|312914898|dbj|BAJ38872.1| IstB [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|312949091|gb|ADR29917.1| transposition protein IstB for insertion sequence IS1326
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|327536594|gb|AEA95427.1| ISPsy4 transposition helper protein [Salmonella enterica subsp.
           enterica serovar Dublin]
          Length = 260

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-----------------RSTRFSNIAKSLDSIL--IDT 107
           V+L+G  G+GK+ LA     ++                  +      +     I   +  
Sbjct: 101 VVLIGGPGTGKTHLATAIGTQAVMHLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLY 160

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
              V+L+++  L F+ T    LFH+++ +++  +S+++T       W 
Sbjct: 161 ADLVILDELGYLPFSQTGGALLFHLLSKLYE-KTSVILTTNLSFSEWS 207


>gi|7022415|dbj|BAA91590.1| unnamed protein product [Homo sapiens]
 gi|62420273|gb|AAX81992.1| unknown [Homo sapiens]
          Length = 639

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 389 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 444

Query: 110 PVL 112
            ++
Sbjct: 445 KII 447


>gi|87124626|ref|ZP_01080474.1| cell division protein [Synechococcus sp. RS9917]
 gi|86167505|gb|EAQ68764.1| cell division protein [Synechococcus sp. RS9917]
          Length = 587

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 165 RGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVELFVGVGASRVRDLFKKAKEKAP 224

Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
             V +++ID +           ND       QL   ++        +L+ A         
Sbjct: 225 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFADNSGVILLAATNRADVLDT 284

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      ++       + + LPD    E ++      R +  +  L  +  +R      
Sbjct: 285 AL------MRPGRFDRRIHVDLPDRKGREAILGVHARTRPLAPEVSLQDW-ARRTP-GFS 336

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  A+    
Sbjct: 337 GA-DLANLLNEAAILTAR 353


>gi|85111842|ref|XP_964130.1| 26S protease regulatory subunit 7 [Neurospora crassa OR74A]
 gi|28925898|gb|EAA34894.1| 26S protease regulatory subunit 7 [Neurospora crassa OR74A]
 gi|38566935|emb|CAE76238.1| probable 26S proteasome regulatory subunit YTA3 [Neurospora crassa]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|332306867|ref|YP_004434718.1| AAA ATPase central domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174196|gb|AEE23450.1| AAA ATPase central domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 445

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 37/181 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125
           +IL GP G+GK+ LA I +    +      A +     I +     +E       +  + 
Sbjct: 55  MILWGPPGTGKTTLAEIIAMHCDAHIERISAVTSGVKDIRS----AIEQAKQNALSQAKR 110

Query: 126 --LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVK 169
             LF    H  N   Q        D ++     T              L SR   A V  
Sbjct: 111 TILFVDEVHRFNKSQQDAFLPFIEDGTITFIGATTENPSFELNGA---LLSR---ARVYV 164

Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
           +     D L  +  +   D  R      + I+ K    +    E +   A +L++ ++  
Sbjct: 165 LKSLTQDDLTDIAKQALEDKTRGLGRLSLHIEDKGIDLL---TELAGGDARRLLNYIELA 221

Query: 223 A 223
           A
Sbjct: 222 A 222


>gi|328865370|gb|EGG13756.1| hypothetical protein DFA_11517 [Dictyostelium fasciculatum]
          Length = 579

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GKS LA   +  S +  F ++  +      D   PV+ E       +
Sbjct: 338 PPSGVLLHGPPGTGKSLLARAIASSSPNINFISVQST------DIISPVVGE-------S 384

Query: 123 DTQLFHIINSIHQYDSSLLM 142
           + +L  +   +     ++L 
Sbjct: 385 EKKLTALFRVLRDSAPAILF 404


>gi|326561726|gb|EGE12061.1| recombination factor protein RarA [Moraxella catarrhalis 7169]
 gi|326569052|gb|EGE19121.1| recombination factor protein RarA [Moraxella catarrhalis BC1]
          Length = 412

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113
             +IL G +G GK+ LA + +D         S ++            D  L      V +
Sbjct: 39  PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98

Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++I   +      L        +     L+ A T   S+ V    L SR     V K+  
Sbjct: 99  DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225
             DD +  +IV+      +   K +    +   ++ S     + ++ ++ +A +
Sbjct: 151 LSDDEIYALIVRAIRQDTLLKTKDIQINDLAALIDLSQGDGRRALNLLELVAAA 204


>gi|326523327|dbj|BAJ88704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 575

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 36/195 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 322 RGVLLAGPPGTGKTLLAKAVAGEAGIPFFSVSASEFVEMFVGRGAARVRDLFKEAKEAAP 381

Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155
             + ++++D +         ++      QL   ++        ++M A   P +    L 
Sbjct: 382 SIIFIDELDAVGGSRGRSFNDERDQTLNQLLTEMDGFDSDVKVIVMAATNRPKALDSALC 441

Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
            P   SR      V + +PD +   K++        +  D ++   +V  +   LV A  
Sbjct: 442 RPGRFSR-----KVFVGVPDLEGRRKILAVHLRKVPLEEDSEIICDLVANVTPGLVGA-D 495

Query: 215 LVDKMDNLALSRGMG 229
           L + ++  AL     
Sbjct: 496 LANIVNEAALLAARR 510


>gi|320534810|ref|ZP_08035229.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320132989|gb|EFW25518.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +             A +    + +  + +LL+ I   D +
Sbjct: 123 ILLLGPTGTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGD 180


>gi|326771853|ref|ZP_08231138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           viscosus C505]
 gi|326637986|gb|EGE38887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           viscosus C505]
          Length = 433

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +             A +    + +  + +LL+ I   D +
Sbjct: 116 ILLLGPTGTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGD 173


>gi|291562233|emb|CBL41049.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [butyrate-producing bacterium SS3/4]
          Length = 458

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 73/205 (35%), Gaps = 39/205 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             VI  GP G+GK+ LA + ++ + +            K ++ I+ + +  +       +
Sbjct: 67  GSVIFYGPPGTGKTTLAKVIANTTSARFEQINATVAGKKDMEEIVKNAKDSI------GM 120

Query: 120 DFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
               T LF    H  N           +  +  L+ A T    + V    L SR   + +
Sbjct: 121 YGQKTILFVDEIHRFNKSQQDYLLPFVEDGTITLIGATTENPYFEVNNA-LLSR---SRI 176

Query: 168 VKISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD--- 217
            ++   +   + +++++   D           I  + A ++          A   V+   
Sbjct: 177 FELKPLEKQDIRELVMRAVYDTEKGMGTYSADITDEAADFLADVANGDARAALNAVELGI 236

Query: 218 -KMDNLALSRGMGITRSLAAEVLKE 241
              D  +    + IT  +AAE +++
Sbjct: 237 LTTDK-SDDGKIHITIDVAAECIQK 260


>gi|292656507|ref|YP_003536404.1| cell division control protein 48 [Haloferax volcanii DS2]
 gi|291371302|gb|ADE03529.1| cell division control protein 48 [Haloferax volcanii DS2]
          Length = 743

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   ++++ ++ FS
Sbjct: 222 PPQGVLLHGPPGTGKTLLARAVANETSASFFS 253



 Score = 36.3 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 55/213 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G+GK+ +A   ++++ +   S                 I ++       +   
Sbjct: 499 VLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVSPTI 558

Query: 111 VLLEDIDLLD---FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +  +++D L     ND           QL   ++ +    + +++ A   P      L  
Sbjct: 559 IFFDELDALAPARGNDMGNNVSERVVNQLLTELDGLEDAGNVMVIAATNRPDMIDPAL-- 616

Query: 158 LCS----RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           + S    RL     V I  P+++  E+++       Q  +   +                
Sbjct: 617 IRSGRFDRL-----VLIGQPEEEGREQILDIHTQ--QSPLAPDV-------------SLR 656

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           ++ +  D    S    I R  A E L+E    +
Sbjct: 657 EIAEITDGYVGSDLESICREAAIEALREDSDAE 689


>gi|268325558|emb|CBH39146.1| putative replication factor C, large subunit [uncultured archaeon]
          Length = 466

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 48  AIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDK---------------SR 89
             E+A+  ++SW        + VIL+GP G GK+  A   + +               + 
Sbjct: 22  GNEKAIEELNSWADGVAKSKKAVILLGPPGCGKTSAAYALASERDWEVIELNASDQRNAG 81

Query: 90  STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
             R      S  +      + ++L++ D +  N+
Sbjct: 82  VIRSIVGPASASNTFSRATRLIILDEADNIHGNE 115


>gi|228923151|ref|ZP_04086442.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836530|gb|EEM81880.1| hypothetical protein bthur0011_41310 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 476

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 71/203 (34%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 90  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 149

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 150 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 198

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D +   + +   D++       + +      +        +  A   ++         
Sbjct: 199 TEDDILIGLKRALEDKEKGLGEYAVTVTDDALHHFANASGGDMRSAYNALELAVLSSFTT 258

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 259 DDQAA-----EITLEIAEECLQK 276


>gi|225018947|ref|ZP_03708139.1| hypothetical protein CLOSTMETH_02898 [Clostridium methylpentosum
           DSM 5476]
 gi|224948291|gb|EEG29500.1| hypothetical protein CLOSTMETH_02898 [Clostridium methylpentosum
           DSM 5476]
          Length = 227

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 16/61 (26%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V ++GPSGSGKS L +I                L  +   T   V +++ D+   ++T+
Sbjct: 35  FVAIIGPSGSGKSTLLHI----------------LGGVDRPTAGRVFIDNTDVYALDETK 78

Query: 126 L 126
           L
Sbjct: 79  L 79


>gi|171696202|ref|XP_001913025.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948343|emb|CAP60507.1| unnamed protein product [Podospora anserina S mat+]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|167624685|ref|YP_001674979.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           halifaxensis HAW-EB4]
 gi|189044151|sp|B0TLU8|CLPX_SHEHH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167354707|gb|ABZ77320.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           halifaxensis HAW-EB4]
          Length = 425

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 20/110 (18%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVH-----SAIEQAV-----RLIDSWP-SWPS---RVVIL 69
           K++Q     P  L    DD ++        +  AV     RL ++ P          ++L
Sbjct: 59  KQDQDKLPTPHELRAHLDDYVIGQDKAKKVLAVAVYNHYKRLRNATPKDGVELGKSNILL 118

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           +GP+GSGK+ LA   +      R  ++  ++      T    + ED++ +
Sbjct: 119 IGPTGSGKTLLAETLA------RVLDVPFTMADATTLTEAGYVGEDVENI 162


>gi|156363865|ref|XP_001626260.1| predicted protein [Nematostella vectensis]
 gi|156213130|gb|EDO34160.1| predicted protein [Nematostella vectensis]
          Length = 391

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   + +  +     ++ ++    I     ++ E
Sbjct: 168 PPKGCLLFGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE 219


>gi|154272710|ref|XP_001537207.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415719|gb|EDN11063.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 445

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 19/102 (18%)

Query: 49  IEQ-AVRLIDSWPSWPSRVVILV-GPSGSGKSCLANIWSDKSR----STRFSNIAKSLDS 102
             Q A    +     P R   L  GP G+GK+ LA   + K      +   +    + D 
Sbjct: 231 NAQSAYAKTER----PYRRGYLFNGPPGTGKTSLALALAGKFGLDIYTLSLTGQNMTDDE 286

Query: 103 IL-----IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS 139
           +      +  R  +L+EDID    N  +    + +I ++ + 
Sbjct: 287 LQWLCSHLPRRCVLLIEDIDSAGINREK----MRAIQEHGTR 324


>gi|157817141|ref|NP_001099954.1| fidgetin [Rattus norvegicus]
 gi|149022122|gb|EDL79016.1| fidgetin (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 759

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 509 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 564

Query: 110 PVL 112
            ++
Sbjct: 565 KII 567


>gi|50604137|gb|AAH77223.1| Unknown (protein for MGC:79055) [Xenopus laevis]
          Length = 414

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 194 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 241


>gi|13278504|gb|AAH04052.1| Psmc5 protein [Mus musculus]
          Length = 306

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 86  VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 133


>gi|54696318|gb|AAV38531.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic
           construct]
          Length = 407

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 233


>gi|58040123|ref|YP_192087.1| cell division protein FtsH [Gluconobacter oxydans 621H]
 gi|58002537|gb|AAW61431.1| Cell division protein FtsH [Gluconobacter oxydans 621H]
          Length = 634

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 69/207 (33%), Gaps = 49/207 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 192 ALLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKSAPCI 251

Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGV 153
           + +++ID +            ++ +    +N +          +  +L+ A   P     
Sbjct: 252 IFIDEIDAVGRHRGAGLGGGNDERE--QTLNQMLVEMDGFESNEGVILIAATNRPDVLDP 309

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    EK++      R++ +   +   ++ R      
Sbjct: 310 AL------LRPGRFDRQVVVPNPDVAGREKILRVHM--RKVPLSSDVDPKVIARGTPGFS 361

Query: 211 FAEKLVDKMDNLAL--SRGMGITRSLA 235
            A  L + ++  AL  +R    T  +A
Sbjct: 362 GA-DLSNLVNEAALMAARQGRRTVGMA 387


>gi|33303987|gb|AAQ02501.1| fidgetin [synthetic construct]
          Length = 640

 Score = 39.0 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 389 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 444

Query: 110 PVL 112
            ++
Sbjct: 445 KII 447


>gi|316975801|gb|EFV59199.1| 26S protease regulatory subunit 4 [Trichinella spiralis]
          Length = 646

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 424 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 475


>gi|312218373|emb|CBX98319.1| similar to vacuolar protein sorting-associated protein VPS4
           [Leptosphaeria maculans]
          Length = 438

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + ++ ST FS  +  L
Sbjct: 168 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 205


>gi|281342914|gb|EFB18498.1| hypothetical protein PANDA_018742 [Ailuropoda melanoleuca]
          Length = 397

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 172 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 231

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 232 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 291

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 292 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 332

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 333 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 367


>gi|281207192|gb|EFA81375.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 801

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P R ++L GP G+GK+ LA I S +  ST F
Sbjct: 309 PPRGILLYGPPGTGKTLLARIVSKEINSTLF 339


>gi|256085939|ref|XP_002579166.1| hypothetical protein [Schistosoma mansoni]
 gi|238664580|emb|CAZ35405.1| expressed protein [Schistosoma mansoni]
          Length = 4140

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 37   GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLA 81
               R  L++        R ID++  W S  +     +LVGP G GK+ L 
Sbjct: 2129 ASGRSPLVLTP---DVRRSIDAFRCWLSNPLSKQSFLLVGPEGCGKTLLL 2175


>gi|119631750|gb|EAX11345.1| hCG1648200 [Homo sapiens]
          Length = 748

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 498 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 553

Query: 110 PVL 112
            ++
Sbjct: 554 KII 556


>gi|114669864|ref|XP_001149426.1| PREDICTED: similar to mSUG1 protein isoform 3 [Pan troglodytes]
          Length = 433

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 213 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 260


>gi|114045761|ref|YP_736311.1| sporulation domain-containing protein [Shewanella sp. MR-7]
 gi|113887203|gb|ABI41254.1| Sporulation domain protein [Shewanella sp. MR-7]
          Length = 464

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 39/148 (26%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS---DKSRSTRF---------- 93
            + E  V  +    S+  ++++LVG  GSGK+ L    +   D+S +             
Sbjct: 3   PSQEALVERLHHVASYSDQLLVLVGAHGSGKTTLLTALATDFDESNAALVICPMHADNAE 62

Query: 94  ------------------SNIAKSLDSILIDTRKP--VLLEDIDLLDFNDTQLFH---II 130
                              ++A+++  +     KP  ++++D  LL     +L+    I+
Sbjct: 63  IRRKILVQLVSSPIFDDEISLAETILRVAPKQSKPLHIIIDDAHLLS---KELWAECIIL 119

Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDL 158
           N +      + +T    P      LP L
Sbjct: 120 NQVQCAGQRIAVTLAVPPAFLAELLPQL 147


>gi|169626507|ref|XP_001806653.1| hypothetical protein SNOG_16544 [Phaeosphaeria nodorum SN15]
 gi|111054964|gb|EAT76084.1| hypothetical protein SNOG_16544 [Phaeosphaeria nodorum SN15]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|157877405|ref|XP_001687020.1| proteasome regulatory ATPase subunit [Leishmania major]
 gi|68130095|emb|CAJ09403.1| proteasome regulatory ATPase subunit [Leishmania major strain
           Friedlin]
          Length = 410

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 190 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRE 237


>gi|11596250|gb|AAG38539.1|AF309805_4 putative 26S protease regulatory subunit 4 [Pneumocystis carinii]
          Length = 437

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +      + E
Sbjct: 213 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKFVRE 264


>gi|169780544|ref|XP_001824736.1| 26S protease regulatory subunit 7 [Aspergillus oryzae RIB40]
 gi|238505286|ref|XP_002383872.1| proteasome regulatory particle subunit Rpt1, putative [Aspergillus
           flavus NRRL3357]
 gi|83773476|dbj|BAE63603.1| unnamed protein product [Aspergillus oryzae]
 gi|220689986|gb|EED46336.1| proteasome regulatory particle subunit Rpt1, putative [Aspergillus
           flavus NRRL3357]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|152976813|ref|YP_001376330.1| recombination factor protein RarA [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025565|gb|ABS23335.1| AAA ATPase central domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 74/198 (37%), Gaps = 34/198 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDK--MDNLAL 224
            +D +   + +  AD++       + +  +   +        +  A   ++   + + A 
Sbjct: 151 TEDDILTGLKRALADKEKGLGEYHVTVTDEAIRHFASASGGDMRSAYNALELAVLSSFAT 210

Query: 225 SRG-MGITRSLAAEVLKE 241
                 IT  +A E L++
Sbjct: 211 DEQAGEITLEIAEECLQK 228


>gi|125775093|ref|XP_001358798.1| GA19274 [Drosophila pseudoobscura pseudoobscura]
 gi|121991043|sp|Q298L4|SPAST_DROPS RecName: Full=Spastin
 gi|54638539|gb|EAL27941.1| GA19274 [Drosophila pseudoobscura pseudoobscura]
          Length = 788

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++
Sbjct: 545 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLV 594


>gi|311694708|gb|ADP97581.1| recombination factor protein RarA [marine bacterium HP15]
          Length = 445

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 68/179 (37%), Gaps = 35/179 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--LLEDI---DLLDF 121
           +IL GP G GK+  A + ++        +++    S ++   K +  ++E          
Sbjct: 52  MILWGPPGVGKTTFAQLLAN------VGDLSFETVSAVLSGVKEIRAVVERARNRKQSQG 105

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
            DT LF    H  N           +  + + + A T   S+ +    L SR +   V  
Sbjct: 106 RDTLLFVDEVHRFNKSQQDAFLPHIEDGTFIFVGATTENPSFELNSA-LLSRTR---VYV 161

Query: 170 ISLPDDDFLEKVIVKMFADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   +++ + +++ +          ++ +D+ +   +      S   A + ++ ++  A
Sbjct: 162 LKNLEEEDILQLLRRALTVDEGFGGRLRVDEDVLTLMAAA---SGGDARRALNILEVAA 217


>gi|301109904|ref|XP_002904032.1| fidgetin-like protein [Phytophthora infestans T30-4]
 gi|262096158|gb|EEY54210.1| fidgetin-like protein [Phytophthora infestans T30-4]
          Length = 576

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G+GK+ +    + +S +T FS  A SL S  I   + ++
Sbjct: 334 LLLFGPPGTGKTLIGKAIASQSGATFFSISASSLTSKWIGQGEKLV 379


>gi|260892526|ref|YP_003238623.1| Vesicle-fusing ATPase [Ammonifex degensii KC4]
 gi|260864667|gb|ACX51773.1| Vesicle-fusing ATPase [Ammonifex degensii KC4]
          Length = 500

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 19/47 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           P + ++L GP G+GK+ LA   +  + +   +        +      
Sbjct: 98  PLKGILLTGPPGTGKTLLAKAAAGYTDAVFIAASGSEFVEMYAGVGA 144


>gi|302874689|ref|YP_003843322.1| MgsA AAA+ ATPase-like [Clostridium cellulovorans 743B]
 gi|307690699|ref|ZP_07633145.1| recombination factor protein RarA [Clostridium cellulovorans 743B]
 gi|302577546|gb|ADL51558.1| MgsA AAA+ ATPase-like [Clostridium cellulovorans 743B]
          Length = 424

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 24/155 (15%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKPVL 112
             +I  GP G GK+ +ANI +  +                   I   LD+ +      + 
Sbjct: 39  PNMIFYGPPGCGKTTVANIIAKATNKRFFKLNATNASTKDIKEIILELDTFMGAKGVLLY 98

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           L++I   +      L   I    +  S  L+ + T    + V    L SR       K+ 
Sbjct: 99  LDEIQNFNKKQQQSLLEFI----ENGSITLIASTTENPYFYVYNAIL-SR-SNVFEFKMV 152

Query: 172 LPDD---DFLEK--VIVKMFADRQIFIDKKLAAYI 201
             DD     +    V+   F   +I ++ +   YI
Sbjct: 153 SSDDIEKALMRAVEVLQNDFKSSKILLEDEALKYI 187


>gi|226363733|ref|YP_002781515.1| ATP-dependent protease FtsH [Rhodococcus opacus B4]
 gi|226242222|dbj|BAH52570.1| ATP-dependent protease FtsH [Rhodococcus opacus B4]
          Length = 768

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 19/114 (16%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K+K +QL    P+         D          D L + A  QA+         P  V+ 
Sbjct: 150 KSKAKQLSKDMPKTTFADVAGADEAVEELYEIKDFLQNPARYQALG-----AKIPKGVL- 203

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           L GP G+GK+ LA   + ++    F+        + +      + +  D    N
Sbjct: 204 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFDQAKQN 257


>gi|218197837|gb|EEC80264.1| hypothetical protein OsI_22232 [Oryza sativa Indica Group]
          Length = 951

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 33  PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           P  +G+  DD+    A+E   + +D  P    + ++L GP G+GK+ LA   + ++ +  
Sbjct: 671 PNEIGVKFDDI---GALEDVKKTLDELPC---KGILLFGPPGTGKTLLAKALATEAGANF 724

Query: 93  FS 94
            S
Sbjct: 725 IS 726


>gi|213510772|ref|NP_001133113.1| 26S protease regulatory subunit 7 [Salmo salar]
 gi|197631973|gb|ACH70710.1| 26S protease regulatory subunit 7 [Salmo salar]
 gi|209732288|gb|ACI67013.1| 26S protease regulatory subunit 7 [Salmo salar]
          Length = 434

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 268

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 329 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 369

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 370 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 404


>gi|194374563|dbj|BAG57177.1| unnamed protein product [Homo sapiens]
          Length = 1075

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 20/78 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSILIDT 107
           +  ++L G  GSGKS LA     ++                R  R  NI K+L+    + 
Sbjct: 384 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEA 443

Query: 108 R----KPVLLEDIDLLDF 121
                  VLL+D+DL+  
Sbjct: 444 VWMQPSVVLLDDLDLIAG 461



 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 669 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 716


>gi|195144956|ref|XP_002013462.1| GL23394 [Drosophila persimilis]
 gi|229559928|sp|B4G437|SPAST_DROPE RecName: Full=Spastin
 gi|194102405|gb|EDW24448.1| GL23394 [Drosophila persimilis]
          Length = 788

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++
Sbjct: 545 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLV 594


>gi|148702336|gb|EDL34283.1| protease (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_b
           [Mus musculus]
          Length = 326

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 106 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 153


>gi|114669868|ref|XP_001149361.1| PREDICTED: similar to mSUG1 protein isoform 2 [Pan troglodytes]
          Length = 387

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 167 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 214


>gi|2661071|gb|AAB88187.1| similar to 26S proteasome subunit p45 [Homo sapiens]
          Length = 280

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 60  VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 107


>gi|58259998|ref|XP_567409.1| ATPase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134116132|ref|XP_773237.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255859|gb|EAL18590.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229459|gb|AAW45892.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 405

 Score = 39.0 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 182 PPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLIRE 233


>gi|325185494|emb|CCA19977.1| IQ and AAA domaincontaining protein putative [Albugo laibachii
           Nc14]
          Length = 854

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           R ++L GP G GK+ L NI + ++++   +     L +    T  
Sbjct: 582 RSILLYGPRGCGKTKLVNIIAAQAKAFILNLSPNYLQAFPGKTGP 626


>gi|325093185|gb|EGC46495.1| spastin [Ajellomyces capsulatus H88]
          Length = 968

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 697 PGLLLYGPPGTGKTMLAKAVARQSGATVLE 726


>gi|313227570|emb|CBY22717.1| unnamed protein product [Oikopleura dioica]
          Length = 447

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 226 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGSRMVRE 273


>gi|313218802|emb|CBY42601.1| unnamed protein product [Oikopleura dioica]
          Length = 350

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 226 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGSRMVRE 273


>gi|296209712|ref|XP_002751689.1| PREDICTED: peroxisome biogenesis factor 1 [Callithrix jacchus]
          Length = 1239

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 20/78 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSILIDT 107
           +  ++L G  GSGKS LA     ++                R  R  NI K+L+    + 
Sbjct: 593 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEA 652

Query: 108 R----KPVLLEDIDLLDF 121
                  VLL+D+DL+  
Sbjct: 653 MWRQPSVVLLDDLDLIAG 670


>gi|291225648|ref|XP_002732818.1| PREDICTED: Pros45-like [Saccoglossus kowalevskii]
          Length = 376

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 190 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGSRMVRE 237


>gi|281209066|gb|EFA83241.1| 26S protease regulatory subunit 6B [Polysphondylium pallidum PN500]
          Length = 411

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   +  + ++    +        +    P L+ D+  L 
Sbjct: 190 PPRGVLLYGPPGTGKTMLAKAVAHHTSASFIRVVGSEFVQKYL-GEGPRLVRDVFRLA 246


>gi|240103465|ref|YP_002959774.1| proteasome-activating nucleotidase [Thermococcus gammatolerans EJ3]
 gi|259535124|sp|C5A6P8|PAN_THEGJ RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|239911019|gb|ACS33910.1| ATP-dependent 26S proteasome regulatory subunit P45 family
           [Thermococcus gammatolerans EJ3]
          Length = 397

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ +A   ++   +T    +   L    I     ++ E
Sbjct: 171 PPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHE 222


>gi|261203275|ref|XP_002628851.1| 26S protease regulatory subunit [Ajellomyces dermatitidis SLH14081]
 gi|239586636|gb|EEQ69279.1| 26S protease regulatory subunit [Ajellomyces dermatitidis SLH14081]
 gi|239608325|gb|EEQ85312.1| proteasome regulatory particle subunit Rpt1 [Ajellomyces
           dermatitidis ER-3]
 gi|327349523|gb|EGE78380.1| hypothetical protein BDDG_01317 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|238754236|ref|ZP_04615593.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           ruckeri ATCC 29473]
 gi|238707483|gb|EEP99843.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia
           ruckeri ATCC 29473]
          Length = 423

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55
           ++++E+     P ++++  P           P  +    DD ++    A   +  AV   
Sbjct: 46  DIIREEIKEVSPHRERSSLPT----------PHEIRRHLDDYVIGQEPAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|229083384|ref|ZP_04215734.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-44]
 gi|228699920|gb|EEL52555.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-44]
          Length = 633

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 62/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D  +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDDNINLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 369 A-DLENLLNEAALVAAR 384


>gi|241645478|ref|XP_002411084.1| 26S proteasome regulatory complex, ATPase RPT6, putative [Ixodes
           scapularis]
 gi|215503714|gb|EEC13208.1| 26S proteasome regulatory complex, ATPase RPT6, putative [Ixodes
           scapularis]
          Length = 348

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|260787763|ref|XP_002588921.1| hypothetical protein BRAFLDRAFT_125428 [Branchiostoma floridae]
 gi|229274093|gb|EEN44932.1| hypothetical protein BRAFLDRAFT_125428 [Branchiostoma floridae]
          Length = 405

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|195342232|ref|XP_002037705.1| GM18154 [Drosophila sechellia]
 gi|194132555|gb|EDW54123.1| GM18154 [Drosophila sechellia]
          Length = 523

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 37/167 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P R V+L GP G+GK+ +A   + ++++  FS    SL S               +    
Sbjct: 282 PPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAH 341

Query: 109 KPVL--LEDIDLL----DFNDTQ---------LFHIINSIHQYDSSLLMTART-FPVSWG 152
           +P +  ++++D L      N+ +         L H+  +    +  +L+   T  P    
Sbjct: 342 QPAIIFIDEVDSLLSKRSGNENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQEL- 400

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199
               D   R +    + + LP  +  +K+I K+   RQ+  +  +  
Sbjct: 401 ----DEAVRRRFVRRLYVPLPTREARQKIIEKLI--RQVKHNLDVVQ 441


>gi|154279056|ref|XP_001540341.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus NAm1]
 gi|150412284|gb|EDN07671.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus NAm1]
          Length = 392

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 169 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 228

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 229 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 288

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +++    +   + I+ ++           
Sbjct: 289 DPAL------LRAGRLDRKIEIPLPNEVGRLEILKIHAS--GVAIEGEI----------D 330

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 331 FESIVKMSDGLNGADLRN 348


>gi|115385026|ref|XP_001209060.1| 26S protease regulatory subunit 7 [Aspergillus terreus NIH2624]
 gi|114196752|gb|EAU38452.1| 26S protease regulatory subunit 7 [Aspergillus terreus NIH2624]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|73975780|ref|XP_860512.1| PREDICTED: similar to peroxisome biogenesis factor 1 isoform 2
           [Canis familiaris]
          Length = 1210

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA + + +S     S     L S  I   +  + +
Sbjct: 804 VLLYGPPGTGKTLLAGVIARESGMNFISVKGPELLSKYIGASEQAVRD 851


>gi|39934798|ref|NP_947074.1| hypothetical protein RPA1728 [Rhodopseudomonas palustris CGA009]
 gi|39648648|emb|CAE27169.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 1419

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
            +  ++L+G  GSGK+ L    +    +                  +P+ ++ +D
Sbjct: 110 ATPNLVLLGDPGSGKTHLFKEAATAEGARFLKARDFLNMPAHALAGQPLFIDGLD 164


>gi|13508410|ref|NP_110360.1| cell division protein FtsH [Mycoplasma pneumoniae M129]
 gi|2492509|sp|P75120|FTSH_MYCPN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1673833|gb|AAB95819.1| cell division protein FtsH [Mycoplasma pneumoniae M129]
 gi|301633109|gb|ADK86663.1| ATP-dependent metallopeptidase HflB [Mycoplasma pneumoniae FH]
          Length = 709

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           R VIL GP G+GK+ LA   + ++    F +     + +L+    
Sbjct: 262 RGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGA 306


>gi|12045316|ref|NP_073127.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37]
 gi|255660039|ref|ZP_05405448.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37]
 gi|1346047|sp|P47695|FTSH_MYCGE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|3845051|gb|AAC72477.1| ATP-dependent metalloprotease FtsH [Mycoplasma genitalium G37]
 gi|166078722|gb|ABY79340.1| ATP-dependent metalloprotease FtsH [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 702

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           R VIL GP G+GK+ LA   + ++    F +     + +L+    
Sbjct: 265 RGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGA 309


>gi|330870560|gb|EGH05269.1| transposase/IS protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 161

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 26/122 (21%)

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------------TRKPVL 112
           PSG GKS LA   + ++          +   +++                        ++
Sbjct: 1   PSGVGKSHLAIALAYRAVMAGIKTRFVTAADLMLQLTAAHRQERLKEYFSRVVMAPGLLV 60

Query: 113 LEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           +++I  L F  ++  LF   N +       SL++T+      W     D  + L AA + 
Sbjct: 61  IDEIGYLPFGRDEANLF--FNVVAKRYEQGSLILTSNLPFTQWAGTFADDQT-LTAAMLD 117

Query: 169 KI 170
           ++
Sbjct: 118 RL 119


>gi|325495819|gb|EGC93679.1| transposon NTP-binding protein [Escherichia fergusonii ECD227]
          Length = 243

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-----------------RSTRFSNIAKSLDSIL--IDT 107
           V+L+G  G+GK+ LA     ++                  +      +     I   +  
Sbjct: 84  VVLIGGPGTGKTHLATAIGTQAVMHLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLY 143

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
              V+L+++  L F+ T    LFH+++ +++  +S+++T       W 
Sbjct: 144 ADLVILDELGYLPFSQTGGALLFHLLSKLYE-KTSVILTTNLSFSEWS 190


>gi|320584045|gb|EFW98257.1| MSP1 putative membrane-spanning ATPase [Pichia angusta DL-1]
          Length = 357

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA   + KSR+   S    ++          ++             L
Sbjct: 126 VLLYGPPGCGKTMLAKALASKSRANFISIRMSTIMDKWYGESNKLV-----------DAL 174

Query: 127 FHIINSIH 134
           F + N + 
Sbjct: 175 FSLANKLQ 182


>gi|321263320|ref|XP_003196378.1| 6S protease subunit rpt4 [Cryptococcus gattii WM276]
 gi|317462854|gb|ADV24591.1| 6S protease subunit rpt4, putative [Cryptococcus gattii WM276]
          Length = 405

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 182 PPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLIRE 233


>gi|303238756|ref|ZP_07325288.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
 gi|302593635|gb|EFL63351.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2]
          Length = 617

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
           D LV     +   ++      P +  +L GP G+GK+ LA   +  + 
Sbjct: 195 DFLVSPERFKKFGVV------PPKGTVLFGPPGTGKTLLAKALAGTAG 236


>gi|289621630|emb|CBI52413.1| unnamed protein product [Sordaria macrospora]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|229032049|ref|ZP_04188032.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271]
 gi|228729294|gb|EEL80288.1| hypothetical protein bcere0028_40940 [Bacillus cereus AH1271]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|229158015|ref|ZP_04286086.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342]
 gi|228625468|gb|EEK82224.1| hypothetical protein bcere0010_41940 [Bacillus cereus ATCC 4342]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|303274320|ref|XP_003056481.1| AAA ATPase [Micromonas pusilla CCMP1545]
 gi|226462565|gb|EEH59857.1| AAA ATPase [Micromonas pusilla CCMP1545]
          Length = 749

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P+  ++LVGP GSGKS LA +      +   S    S    L+   +  +++
Sbjct: 219 PASHMVLVGPPGSGKSMLARL-----TAYIVSECDVSRHGPLVRPSRADIID 265


>gi|225563233|gb|EEH11512.1| spastin [Ajellomyces capsulatus G186AR]
          Length = 968

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 697 PGLLLYGPPGTGKTMLAKAVARQSGATVLE 726


>gi|296488727|gb|DAA30840.1| fidgetin-like [Bos taurus]
          Length = 974

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + ++ +T FS  A SL S
Sbjct: 733 PPKGILLFGPPGTGKTLIGKCIASQAGATFFSISASSLTS 772


>gi|159129610|gb|EDP54724.1| midasin, putative [Aspergillus fumigatus A1163]
          Length = 4925

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 55   LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            ++    SWPS   ILVGPSG GK+ L    +  + +     +A S D+  +D       E
Sbjct: 2040 MLCIEQSWPS---ILVGPSGCGKTTLIRKLAALNGADLVE-LALSADTDTMDLIGGF--E 2093

Query: 115  DID 117
             ID
Sbjct: 2094 QID 2096



 Score = 35.5 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 19/124 (15%)

Query: 67   VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            V+LVG +G GK+ L    ++  + +    +         LI  ++PV           +T
Sbjct: 1361 VLLVGETGCGKTQLCQAVAEICRKQLFIVNAHVNLETGDLIGAQRPVR-----NRAAIET 1415

Query: 125  QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
            QL    N +     +++ T    P S    L +L S   A TV ++   D + + + I K
Sbjct: 1416 QLL---NDLR----TVVNTGDAEPRS----LDELRSTFSAMTVEQLEACDSE-IVQRIQK 1463

Query: 185  MFAD 188
              A 
Sbjct: 1464 NIAR 1467


>gi|160947140|ref|ZP_02094307.1| hypothetical protein PEPMIC_01072 [Parvimonas micra ATCC 33270]
 gi|158446274|gb|EDP23269.1| hypothetical protein PEPMIC_01072 [Parvimonas micra ATCC 33270]
          Length = 335

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P    +L GP G GK+ LANI +++           +++           L   D+L  +
Sbjct: 56  PLDHSLLYGPPGLGKTTLANIIANEMGVNIRVTSGPAIEKPSDLASILTNLSKDDVLFID 115

Query: 123 DTQLFHIINSIHQY 136
           +    H IN   + 
Sbjct: 116 EI---HRINRSVEE 126


>gi|110433425|gb|ABG74394.1| DnaA [Rickettsia helvetica]
          Length = 199

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDF 121
           +   W  K  +     I  S +  +    K                   ++++DI  +  
Sbjct: 123 HAIGWYIKQNTPNRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|119603739|gb|EAW83333.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2, isoform
           CRA_c [Homo sapiens]
          Length = 271

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 46  PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 105

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 106 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 165

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 166 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 206

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 207 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 241


>gi|119597250|gb|EAW76844.1| peroxisome biogenesis factor 1, isoform CRA_e [Homo sapiens]
          Length = 1284

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 20/78 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSILIDT 107
           +  ++L G  GSGKS LA     ++                R  R  NI K+L+    + 
Sbjct: 592 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEA 651

Query: 108 R----KPVLLEDIDLLDF 121
                  VLL+D+DL+  
Sbjct: 652 VWMQPSVVLLDDLDLIAG 669



 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 924


>gi|118347433|ref|XP_001007193.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89288960|gb|EAR86948.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 761

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 24/102 (23%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKN---KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS 58
           +++ E+ +    D    D  K    +  Q+   +P                     +++ 
Sbjct: 236 DILVENPNVKFKDIVGLDDAKRLLKEAVQIPLKYPH--------FFTG--------ILEP 279

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           W     R V+L GP G+GK+ LA   + +  +T F+  A S+
Sbjct: 280 W-----RGVLLYGPPGTGKTMLAKAVATECGTTFFNISASSV 316


>gi|42525535|ref|NP_970633.1| recombination factor protein RarA [Treponema denticola ATCC 35405]
 gi|41815546|gb|AAS10514.1| ATPase, AAA family [Treponema denticola ATCC 35405]
          Length = 441

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 21/129 (16%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA + ++  KS     + +   +  I          E+   L    T
Sbjct: 56  LIFFGPPGTGKTTLARVIANTTKSNFLSLNAVLAGVQQIREAVTNA---EENKKLYNRKT 112

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V    L SR   + V ++  
Sbjct: 113 ILFVDEVHRWNKSQQDALLPWVENGTIILIGATTENPYFEVNKA-LVSR---SRVFELKP 168

Query: 173 PDDDFLEKV 181
             D+ L+KV
Sbjct: 169 LTDNDLKKV 177


>gi|89070526|ref|ZP_01157815.1| ATPase, AAA family protein [Oceanicola granulosus HTCC2516]
 gi|89043833|gb|EAR50031.1| ATPase, AAA family protein [Oceanicola granulosus HTCC2516]
          Length = 441

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 35/201 (17%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G GK+ +A + + ++     + S I   +  +            + 
Sbjct: 54  ASGSLSSLVFWGPPGVGKTTIARLLAAETDLHFVQISAIFTGVQELRKVFEAA----RLR 109

Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163
                 T LF    H  N   Q          ++L+   T              L SR +
Sbjct: 110 RQAGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LLSRAQ 166

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK----- 218
              + ++ L   + L +        R + +D      +++  +        LV++     
Sbjct: 167 VLVLERLPLARLELLAQRAEAELG-RPLPLDGPAREALLEMADGDGRALLNLVEQVAGWR 225

Query: 219 ----MDNLALSRGMGITRSLA 235
               +D  AL+    +TR  A
Sbjct: 226 TDAPLDKTALA--TRLTRRAA 244


>gi|71001732|ref|XP_755547.1| midasin [Aspergillus fumigatus Af293]
 gi|66853185|gb|EAL93509.1| midasin, putative [Aspergillus fumigatus Af293]
          Length = 4925

 Score = 39.0 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 55   LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            ++    SWPS   ILVGPSG GK+ L    +  + +     +A S D+  +D       E
Sbjct: 2040 MLCIEQSWPS---ILVGPSGCGKTTLIRKLAALNGADLVE-LALSADTDTMDLIGGF--E 2093

Query: 115  DID 117
             ID
Sbjct: 2094 QID 2096



 Score = 35.5 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 19/124 (15%)

Query: 67   VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            V+LVG +G GK+ L    ++  + +    +         LI  ++PV           +T
Sbjct: 1361 VLLVGETGCGKTQLCQAVAEICRKQLFIVNAHVNLETGDLIGAQRPVR-----NRAAIET 1415

Query: 125  QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184
            QL    N +     +++ T    P S    L +L S   A TV ++   D + + + I K
Sbjct: 1416 QLL---NDLR----TVVNTGDAEPRS----LDELRSTFSAMTVEQLEACDSE-IVQRIQK 1463

Query: 185  MFAD 188
              A 
Sbjct: 1464 NIAR 1467


>gi|255019901|ref|ZP_05291976.1| Cell division protein FtsH [Acidithiobacillus caldus ATCC 51756]
 gi|254970681|gb|EET28168.1| Cell division protein FtsH [Acidithiobacillus caldus ATCC 51756]
          Length = 639

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+G  GSGK+ LA   + ++R   FS        + +                     
Sbjct: 194 VLLMGSPGSGKTLLARAIAGEARVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKHAPCI 253

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 254 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFEGTEGIIVIAATNRPDVLDPAL 313

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V + LPD    E+++      R++ I   +   ++ R       A
Sbjct: 314 ------LRPGRFDRQVTVPLPDIRGREQILQVHM--RKVPIGPDVDPKVIARGTPGFSGA 365

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 366 -DLANLVNEAALMAARK 381


>gi|255944731|ref|XP_002563133.1| Pc20g06040 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587868|emb|CAP85933.1| Pc20g06040 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|212546613|ref|XP_002153460.1| proteasome regulatory particle subunit Rpt1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210064980|gb|EEA19075.1| proteasome regulatory particle subunit Rpt1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 349

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 124 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 175


>gi|195110965|ref|XP_002000050.1| GI24873 [Drosophila mojavensis]
 gi|193916644|gb|EDW15511.1| GI24873 [Drosophila mojavensis]
          Length = 392

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G GK+ LA   ++ + ++  + +        +     ++ +
Sbjct: 172 PPRGVLLYGPPGCGKTMLAKAVANHTTASFIAVVGSEFVQKYLGEGPRMVRD 223


>gi|156079716|gb|ABU48445.1| putative replication-associated protein [Swan circovirus]
          Length = 293

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 55  LIDSWPSWPSRVVILVGPSGSGKS 78
           ++++   W + V++L+GP GSGKS
Sbjct: 152 IVETPRDWKTEVIVLIGPPGSGKS 175


>gi|167770543|ref|ZP_02442596.1| hypothetical protein ANACOL_01889 [Anaerotruncus colihominis DSM
           17241]
 gi|167667138|gb|EDS11268.1| hypothetical protein ANACOL_01889 [Anaerotruncus colihominis DSM
           17241]
          Length = 346

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 75/206 (36%), Gaps = 29/206 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P   V+L GP G GK+ L+NI +++        S          +     +     + ++
Sbjct: 59  PLDHVLLYGPPGLGKTTLSNIIANEMGVNIRITSGPAIEKPGDLAALLTNLAPNDILFID 118

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD----------------L 158
           +I  L     ++  +  ++  +   +++       S  + LP                 L
Sbjct: 119 EIHRLSRAVEEV--LYPAMEDFALDIIIGKGPSARSIRIDLPHFTLVGATTRAGQLTSPL 176

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
             R      +++   D+  L+ +I++      +  D K A  + +R   +   A +L+ +
Sbjct: 177 RDRFGVIQRLELYTADE--LQTIILRSAGILGVMCDPKGAYELARRSRGTPRVANRLLKR 234

Query: 219 M-DNLALSRGMGITRSLAAEVLKETQ 243
           + D   +     IT  +AA  L   +
Sbjct: 235 VRDFAEVMGNGRITEEIAAIALDRME 260


>gi|116788138|gb|ABK24770.1| unknown [Picea sitchensis]
          Length = 416

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P+R V+L GP G  K+ L N  +  S++  FS     L S+ +   + +L E
Sbjct: 173 PARGVLLHGPPGCSKTTLVNAAAHASQANLFSLSGAELYSMYVGEGEALLRE 224


>gi|154275720|ref|XP_001538711.1| proteasome-activating nucleotidase [Ajellomyces capsulatus NAm1]
 gi|150415151|gb|EDN10513.1| proteasome-activating nucleotidase [Ajellomyces capsulatus NAm1]
 gi|225556435|gb|EEH04723.1| 26S protease regulatory subunit [Ajellomyces capsulatus G186AR]
 gi|240273543|gb|EER37063.1| 26S protease regulatory subunit 7 [Ajellomyces capsulatus H143]
 gi|325087446|gb|EGC40756.1| 26S protease regulatory subunit 7 [Ajellomyces capsulatus H88]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|145234069|ref|XP_001400407.1| 26S protease regulatory subunit 7 [Aspergillus niger CBS 513.88]
 gi|134057348|emb|CAK44546.1| unnamed protein product [Aspergillus niger]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|123463531|ref|XP_001316980.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121899702|gb|EAY04757.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 485

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 21/132 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+LVGPSG GKS +A        ++R S    +   I+              +  +
Sbjct: 245 PPRGVLLVGPSGVGKSLIAR---SIGHASRVSFFDITCTEIIAP-----------EVGES 290

Query: 123 DTQLFHIINSIHQYDSSLLMT----ARTFPVSWGVCLPDLCSRLKAATVVKISLP---DD 175
           + +L  I         SL++     +   P ++G  L +   RL    +V+       DD
Sbjct: 291 ERRLHSIFERARSSSPSLILFDDIDSIAPPRTFGQSLNEAADRLLTTLLVETDGLVGRDD 350

Query: 176 DFLEKVIVKMFA 187
             +        +
Sbjct: 351 GVIVMATTSRLS 362


>gi|86740052|ref|YP_480452.1| AFG1-like ATPase [Frankia sp. CcI3]
 gi|86566914|gb|ABD10723.1| AFG1-like ATPase [Frankia sp. CcI3]
          Length = 390

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 12/105 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTR 108
           PS     V L G  G GK+  LA++W               ++    +  +  +  +   
Sbjct: 114 PSGMRPGVYLDGGFGVGKTHLLASLWHAVPGPKAYGTFVELTSLVGALGFAATARALAGL 173

Query: 109 KPVLLEDIDLLDFNDTQLF-HIINSIHQYDSSLLMTARTFPVSWG 152
           + V +++ +L D  DT L   ++  + +    L  T+ T P   G
Sbjct: 174 RLVAIDEFELDDPGDTVLVSSLLTRLVEAGVHLAATSNTQPEDLG 218


>gi|322692520|gb|EFY84425.1| ATPase [Metarhizium acridum CQMa 102]
          Length = 831

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
            +  GP G+GK+ L    +  S ++  +
Sbjct: 506 ALFCGPPGTGKTHLCRAIAKASGASMLA 533


>gi|307354219|ref|YP_003895270.1| 26S proteasome subunit P45 family [Methanoplanus petrolearius DSM
           11571]
 gi|307157452|gb|ADN36832.1| 26S proteasome subunit P45 family [Methanoplanus petrolearius DSM
           11571]
          Length = 391

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ +A   ++++ +T        L    I     ++ +
Sbjct: 172 PPKGILLYGPPGTGKTLIAKAVANQANATFIRMSGSELVHKFIGEGAQMVRD 223


>gi|300710268|ref|YP_003736082.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus
           jeotgali B3]
 gi|299123951|gb|ADJ14290.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus
           jeotgali B3]
          Length = 741

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 61/163 (37%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    +
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEE 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + ++++D +                 QL  +++ +      +++ A     S    
Sbjct: 282 SPAIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDS---V 338

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L    +    + I +PD+   E+++      R + +   +
Sbjct: 339 DPALRRPGRFDREISIDVPDEVGREEILQ--IHTRGMPLSDDV 379



 Score = 36.7 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   V+L GP G+GK+ +A   ++++ +   S
Sbjct: 495 PPAGVLLYGPPGTGKTLMAKAVANETNANFIS 526


>gi|300716072|ref|YP_003740875.1| polynucleotide ATPase [Erwinia billingiae Eb661]
 gi|299061908|emb|CAX59024.1| Putative polynucleotide ATPase protein [Erwinia billingiae Eb661]
          Length = 447

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 36/202 (17%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I     ++   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEIIGRYGQADVERISAVTSGVKEIREAIERA----RQNRDAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRMERSL--VFAEKLVDKM----DNL 222
                + +E V+ +    +DR    +  +     +RM   L    A + ++ +    D  
Sbjct: 163 KSLTSEDIEIVLDQAMKDSDRGYGKENIVLPEGTRRMIAELVNGDARRALNTLEMMADMA 222

Query: 223 ALSRGMGITRSLAAEVLKETQQ 244
            ++      R L A++L E   
Sbjct: 223 EVNSKGK--RELTAQLLNEVSG 242


>gi|289642581|ref|ZP_06474723.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
 gi|289507576|gb|EFD28533.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca
           glomerata]
          Length = 720

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 39/208 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 194 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 253

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 254 IFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 313

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L   R     VV    PD     + I+K+ A +   I+  +   ++ R       A  
Sbjct: 314 --LRPGRFDRQIVV--DRPD-LLGREAILKVHA-KGKPIEPDVDMLVIARRTPGFTGA-D 366

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
           L + ++  AL       + +++++L+E+
Sbjct: 367 LANVLNEAALLTARSDHKFISSDLLEES 394


>gi|242091832|ref|XP_002436406.1| hypothetical protein SORBIDRAFT_10g001950 [Sorghum bicolor]
 gi|241914629|gb|EER87773.1| hypothetical protein SORBIDRAFT_10g001950 [Sorghum bicolor]
          Length = 490

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 250 PARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLV 299


>gi|240275818|gb|EER39331.1| spastin [Ajellomyces capsulatus H143]
          Length = 968

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 697 PGLLLYGPPGTGKTMLAKAVARQSGATVLE 726


>gi|239989048|ref|ZP_04709712.1| putative AfsR-like transcriptional regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 632

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 28/65 (43%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
              +  +    +  + V ++ GP+G GK+ LA  W+ +S +        +      +  +
Sbjct: 11  AAELAALTRAAAGEAPVCLVTGPAGVGKTALALQWAHRSGALFPDGRLFADLRGFSEAGE 70

Query: 110 PVLLE 114
           P L++
Sbjct: 71  PALID 75


>gi|224130038|ref|XP_002320737.1| predicted protein [Populus trichocarpa]
 gi|222861510|gb|EEE99052.1| predicted protein [Populus trichocarpa]
          Length = 292

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 54  PARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLV 103


>gi|224053835|ref|XP_002298003.1| predicted protein [Populus trichocarpa]
 gi|222845261|gb|EEE82808.1| predicted protein [Populus trichocarpa]
          Length = 344

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
          P R ++L GP G+GK+ LA   + ++ ++  +
Sbjct: 64 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 95


>gi|242822819|ref|XP_002487965.1| proteasome regulatory particle subunit Rpt1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218712886|gb|EED12311.1| proteasome regulatory particle subunit Rpt1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|226502728|ref|NP_001141317.1| hypothetical protein LOC100273408 [Zea mays]
 gi|194703948|gb|ACF86058.1| unknown [Zea mays]
          Length = 490

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++
Sbjct: 250 PARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLV 299


>gi|195160265|ref|XP_002020996.1| GL25072 [Drosophila persimilis]
 gi|198464587|ref|XP_001353280.2| GA20215 [Drosophila pseudoobscura pseudoobscura]
 gi|194118109|gb|EDW40152.1| GL25072 [Drosophila persimilis]
 gi|198149786|gb|EAL30783.2| GA20215 [Drosophila pseudoobscura pseudoobscura]
          Length = 389

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ +A   + +  +     ++ ++    I     ++ E
Sbjct: 166 PPKGCLLYGPPGTGKTLMARAIASQMDANFLKVVSSAIVDKYIGESARLIRE 217


>gi|194246470|ref|YP_002004109.1| DNA replication protein [Candidatus Phytoplasma mali]
 gi|193806827|emb|CAP18256.1| DNA replication protein [Candidatus Phytoplasma mali]
          Length = 266

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 30/117 (25%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------------I 105
           R   L GP  +GK+    I + +    +   I   +  ++                   +
Sbjct: 121 RGFFLHGPFNTGKTYFLKIIAKELIKQQIPFIFVLMSDLVRQFKIISWHNEVLENKLNYL 180

Query: 106 DTRKPVLLEDIDLLDFN----DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
                + L+D+     N    D  LF ++N   +    L +T+        + L DL
Sbjct: 181 KKVPYLFLDDLGSEQMNSNFRDDILFSLLNYRLENKKPLFITS-------NMKLNDL 230


>gi|119481291|ref|XP_001260674.1| midasin, putative [Neosartorya fischeri NRRL 181]
 gi|119408828|gb|EAW18777.1| midasin, putative [Neosartorya fischeri NRRL 181]
          Length = 4926

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 55   LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            ++    SWPS   ILVGPSG GK+ L    +  + +     +A S D+  +D       E
Sbjct: 2040 MLCIEQSWPS---ILVGPSGCGKTTLIRKLAALNGADLVE-LALSADTDTMDLIGGF--E 2093

Query: 115  DID 117
             ID
Sbjct: 2094 QID 2096


>gi|114669870|ref|XP_001149504.1| PREDICTED: similar to mSUG1 protein isoform 4 [Pan troglodytes]
          Length = 329

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 109 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 156


>gi|194468283|ref|ZP_03074269.1| AAA ATPase central domain protein [Lactobacillus reuteri 100-23]
 gi|194453136|gb|EDX42034.1| AAA ATPase central domain protein [Lactobacillus reuteri 100-23]
          Length = 434

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   K    + +    +   + I   +        +LL++I 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTKYAFRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101

Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD    D  L H+ N        +L+ A T      +  P + SR     +  +     
Sbjct: 102 RLDKGKQDFLLPHLEN-----GRIILIGATTENPYISIN-PAIRSR---TQIFPVHPLST 152

Query: 176 DFLEKVIVKMFAD--RQI 191
           D ++  I     D  R +
Sbjct: 153 DEMKIAIQHALVDKERGL 170


>gi|73975782|ref|XP_860539.1| PREDICTED: similar to peroxisome biogenesis factor 1 isoform 3
           [Canis familiaris]
          Length = 1227

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA + + +S     S     L S  I   +  + +
Sbjct: 821 VLLYGPPGTGKTLLAGVIARESGMNFISVKGPELLSKYIGASEQAVRD 868


>gi|15922918|ref|NP_378587.1| cell division control protein [Sulfolobus tokodaii str. 7]
 gi|15623709|dbj|BAB67696.1| 700aa long hypothetical cell division control protein [Sulfolobus
           tokodaii str. 7]
          Length = 700

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L GP G+GK+ LA   + +S +   +
Sbjct: 468 ILLYGPPGTGKTMLARAVAHESGANFIA 495


>gi|67582656|ref|XP_664935.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54655117|gb|EAL34705.1| hypothetical protein Chro.60119 [Cryptosporidium hominis]
          Length = 172

 Score = 39.0 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 14/76 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E            
Sbjct: 49  VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE------------ 96

Query: 127 FHIINSIHQYDSSLLM 142
             +     ++  SL+ 
Sbjct: 97  --LFVMAREHAPSLIF 110


>gi|332206820|ref|XP_003252493.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome biogenesis factor 1-like
           [Nomascus leucogenys]
          Length = 1283

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 20/78 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSILIDT 107
           +  ++L G  GSGKS LA     ++                R  R  NI K+L+    + 
Sbjct: 592 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEA 651

Query: 108 R----KPVLLEDIDLLDF 121
                  VLL+D+DL+  
Sbjct: 652 VWMQPSVVLLDDLDLIAG 669



 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 924


>gi|325475344|gb|EGC78529.1| AAA family ATPase [Treponema denticola F0402]
          Length = 441

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 21/129 (16%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +I  GP G+GK+ LA + ++  KS     + +   +  I          E+   L    T
Sbjct: 56  LIFFGPPGTGKTTLARVIANTTKSNFLSLNAVLAGVQQIREAVSNA---EENKKLYNRKT 112

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            LF    H  N           +  + +L+ A T    + V    L SR   + V ++  
Sbjct: 113 ILFVDEVHRWNKSQQDALLPWVENGTIILIGATTENPYFEVNKA-LVSR---SRVFELKP 168

Query: 173 PDDDFLEKV 181
             D+ L+KV
Sbjct: 169 LTDNDLKKV 177


>gi|325066965|ref|ZP_08125638.1| ATP-dependent protease ATP-binding subunit ClpX [Actinomyces oris
           K20]
          Length = 433

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +             A +    + +  + +LL+ I   D +
Sbjct: 116 ILLLGPTGTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGD 173


>gi|322700463|gb|EFY92218.1| DNA replication ATPase [Metarhizium acridum CQMa 102]
          Length = 1289

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 43/205 (20%)

Query: 65   RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS-----ILIDTRKPVLLEDIDLL 119
              +IL G SG+GK+ +A   +    S      A S        +  +    +       L
Sbjct: 911  PSMILWGASGTGKTTIARCIAHMVGSRFVELNATSTGVSECKKLFQEAASEL------SL 964

Query: 120  DFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR-----L 162
                T +F    H  N           +  +  L+ A T   S+ V    L SR     L
Sbjct: 965  TGRRTIIFCDEIHRFNKAQQDVFLKPVEAGTVTLIGATTENPSFKVASA-LLSRCRTFTL 1023

Query: 163  KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA-----YIVQRMERSLVFAEKLVD 217
            ++ TV       +D +  +     A+  ++    L       Y+ +  +     A  L++
Sbjct: 1024 RSLTV-------EDIMGILKRARAAEEAVYPPTPLIDEEMMGYLARFSDGDARTALNLLE 1076

Query: 218  KMDNLALSRGMGITRSLAAEVLKET 242
                L+L+   GIT+      L +T
Sbjct: 1077 V--ALSLTTREGITKEDIKSSLTKT 1099


>gi|228935720|ref|ZP_04098533.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823958|gb|EEM69777.1| hypothetical protein bthur0009_41650 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            ++ L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEEDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|256826340|ref|YP_003150300.1| DNA replication protein [Kytococcus sedentarius DSM 20547]
 gi|256689733|gb|ACV07535.1| DNA replication protein [Kytococcus sedentarius DSM 20547]
          Length = 267

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 22/108 (20%)

Query: 65  RVVILVGPSGSGKSCLA---NIWSDKSRSTRFSNIAKSLDSILIDTR------------- 108
           R V+L+GP G+GK+ LA    + + +         A    + L +               
Sbjct: 109 RNVVLLGPPGTGKTHLATALGVAAARQGHRVLFATATDWVTRLTEAHDRGRLAAELTRLR 168

Query: 109 --KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSW 151
               ++++++  L F        F +++S +++ +SL++T+     SW
Sbjct: 169 RYSLIIVDEVGYLPFEQYAANLFFQLVSSRYEH-ASLILTSNLPFSSW 215


>gi|222474858|ref|YP_002563273.1| Holliday junction DNA helicase (ruvB) [Anaplasma marginale str.
           Florida]
 gi|254994713|ref|ZP_05276903.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str.
           Mississippi]
 gi|255002827|ref|ZP_05277791.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str.
           Puerto Rico]
 gi|255003959|ref|ZP_05278760.1| Holliday junction DNA helicase RuvB [Anaplasma marginale str.
           Virginia]
 gi|269959098|ref|YP_003328887.1| Holliday junction DNA helicase B [Anaplasma centrale str. Israel]
 gi|254767405|sp|B9KHQ5|RUVB_ANAMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222418994|gb|ACM49017.1| Holliday junction DNA helicase (ruvB) [Anaplasma marginale str.
           Florida]
 gi|269848929|gb|ACZ49573.1| Holliday junction DNA helicase B [Anaplasma centrale str. Israel]
          Length = 331

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA+I + + +    S     L            L+ +D+L  +
Sbjct: 52  PMDHVLLYGPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQPMDVLFID 111

Query: 123 DTQLFHIINSIHQYDSSLLMTA 144
           +    H +N   +    +L +A
Sbjct: 112 EI---HRLNRNIEE---VLYSA 127


>gi|146416949|ref|XP_001484444.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 418

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +    +    + A ++    I     ++ E
Sbjct: 199 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 246


>gi|114614480|ref|XP_519198.2| PREDICTED: peroxisome biogenesis factor 1 isoform 2 [Pan
           troglodytes]
          Length = 1283

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 20/78 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSILIDT 107
           +  ++L G  GSGKS LA     ++                R  R  NI K+L+    + 
Sbjct: 592 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEA 651

Query: 108 R----KPVLLEDIDLLDF 121
                  VLL+D+DL+  
Sbjct: 652 VWMQPSVVLLDDLDLIAG 669



 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 924


>gi|149022121|gb|EDL79015.1| fidgetin (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 748

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 498 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 553

Query: 110 PVL 112
            ++
Sbjct: 554 KII 556


>gi|52141108|ref|YP_085721.1| recombination factor protein RarA [Bacillus cereus E33L]
 gi|51974577|gb|AAU16127.1| ATPase, AAA family [Bacillus cereus E33L]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|78059884|ref|YP_366459.1| recombination factor protein RarA [Burkholderia sp. 383]
 gi|77964434|gb|ABB05815.1| Recombination protein MgsA [Burkholderia sp. 383]
          Length = 434

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 23/177 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF-- 121
           +I  GP G GK+ LA + +       +   + +    D   +  R   L ++        
Sbjct: 50  MIFWGPPGVGKTTLARLTAQAFDCEFAALSAVLGGVKDIRAVTARAQQLFDEAGRRTIVF 109

Query: 122 -NDTQLFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            ++    H  N   Q          + + + A T   S+ V    L SR   A V  +  
Sbjct: 110 VDEI---HRFNETQQGALLPSVTSGAVVFIGATTENPSFEVNRA-LLSR---ARVYVLKP 162

Query: 173 PDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
             DD L  + V+    A   +  D      ++ + +        L++++   + S G
Sbjct: 163 LGDDALRALFVRAHETALGTLSFDDDALGKLIDQADGDARRFLNLLEQVRTASASAG 219


>gi|297605428|ref|NP_001057200.2| Os06g0225900 [Oryza sativa Japonica Group]
 gi|51535008|dbj|BAD37292.1| spastin-like [Oryza sativa Japonica Group]
 gi|255676849|dbj|BAF19114.2| Os06g0225900 [Oryza sativa Japonica Group]
          Length = 271

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
          P + ++L GP G+GK+ LA   + ++ +   S
Sbjct: 15 PCKGILLFGPPGTGKTLLAKALATEAGANFIS 46


>gi|319407591|emb|CBI81241.1| glycerol-3-phosphate ABC transporter ATP-binding protein
           [Bartonella sp. 1-1C]
          Length = 345

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           +++LVGPSG GKS L  I +      + ++    +D+ LI+ R+P 
Sbjct: 32  LLVLVGPSGCGKSTLLRIIA---GLEQVTSGELYIDNELINNREPA 74


>gi|319404600|emb|CBI78206.1| glycerol-3-phosphate ABC transporter ATP-binding protein
           [Bartonella rochalimae ATCC BAA-1498]
          Length = 345

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           +++LVGPSG GKS L  I +      + ++    +D+ LI+ R+P 
Sbjct: 32  LLVLVGPSGCGKSTLLRIIA---GLEQVTSGELYIDNELINNREPA 74


>gi|317500305|ref|ZP_07958530.1| hypothetical protein HMPREF1026_00473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089691|ref|ZP_08338589.1| hypothetical protein HMPREF1025_02172 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898246|gb|EFV20292.1| hypothetical protein HMPREF1026_00473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330404526|gb|EGG84069.1| hypothetical protein HMPREF1025_02172 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 271

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 20/116 (17%)

Query: 52  AVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDK-----------SRSTRFSNIAK 98
           A   +D+W       +  +  GP G+GKS +A   +++           + +T   +I  
Sbjct: 97  AKNYVDNWDEMKRNHIGCLFWGPVGTGKSYIAGCIANELLKQEVTVKMTNFNTIIDDIFP 156

Query: 99  SLDSI----LIDTRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTF 147
             D       + + + ++++D+ +   ++  L   F +I+   +    L++T    
Sbjct: 157 LADKTEYINALASYQLLIIDDLGVERNSEYALGIIFSVIDRRIRSGRPLIITTNLP 212


>gi|295093945|emb|CBK83036.1| ATP-dependent transcriptional regulator [Coprococcus sp. ART55/1]
          Length = 813

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFN 122
              + G SGSGK+ L + +    +           D +++++      ++++++  L + 
Sbjct: 31  TAYIFGVSGSGKTTLVSRYLGTRKYMVVDAGGIRPDDLVVESSNARKIIVIDNLHELSWG 90

Query: 123 DTQLF--HIINSIHQYDSSLLMTARTFPVSW 151
           D       II  I + D  +++  R     W
Sbjct: 91  DVDTVREQIIELIRREDVWVILVGRCPVPPW 121


>gi|281208808|gb|EFA82983.1| peroxisomal biogenesis factor 1 [Polysphondylium pallidum PN500]
          Length = 1212

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 14/81 (17%)

Query: 48  AIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTRF 93
            +     ++     WPS+               ++L GP G GK+ LA+  + +      
Sbjct: 859 GLANVRAMVKETVGWPSKYPRLFQSSPIRMRSGLLLYGPPGCGKTMLASSIAGEFGLNFI 918

Query: 94  SNIAKSLDSILIDTRKPVLLE 114
           S     L +  I + +  + +
Sbjct: 919 SVKGPELLNKYIGSSEQAVRD 939


>gi|239500908|ref|ZP_04660218.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           AB900]
          Length = 583

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 17/123 (13%)

Query: 8   YSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRD--DLLVHSAIEQAVRLIDSWPSWPSR 65
           Y ++  +++  +Q +  ++Q     P       +  DLL       A++++         
Sbjct: 91  YRYWNLEQRLAEQIRRLKQQ-----PIQPVSCEEHLDLLTDPHQRAALQMVSR-----QS 140

Query: 66  VVILVGPSGSGKSC-LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           + I+ G  G+GK+  LA I +  S++     +A +  +     R    L++     FND 
Sbjct: 141 LSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAPTGKAAQRMQEALQN----SFNDP 196

Query: 125 QLF 127
           +LF
Sbjct: 197 KLF 199


>gi|224061258|ref|XP_002300394.1| white-brown-complex ABC transporter family [Populus trichocarpa]
 gi|222847652|gb|EEE85199.1| white-brown-complex ABC transporter family [Populus trichocarpa]
          Length = 672

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST---RFSNIAKSLDSILIDTRKPVLLEDI--D 117
           P  ++ L+GPSGSGK+ L  I   +       R +    + ++++      V  +D+   
Sbjct: 98  PGEILALMGPSGSGKTTLLKIIGGRLSENVKGRITYDDIAYNAVIKRRIGFVTQDDVLLP 157

Query: 118 LLDFNDTQLFHII-----NSIHQYD 137
            L   +T +F        N   Q  
Sbjct: 158 QLTVEETLVFAAFLRLPGNMSRQQK 182


>gi|212546611|ref|XP_002153459.1| proteasome regulatory particle subunit Rpt1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210064979|gb|EEA19074.1| proteasome regulatory particle subunit Rpt1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|190347960|gb|EDK40330.2| cell division control protein 48 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 825

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 246 PPKGILMYGPPGTGKTVMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 305

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +    +++++ A   P S    
Sbjct: 306 APSIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNTVVIAATNRPNSIDPA 365

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE +
Sbjct: 366 LRRFGRFDREVDIGVPDAAGRLEILRIHTKNMKLADDVDLEAI 408


>gi|170747185|ref|YP_001753445.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653707|gb|ACB22762.1| Holliday junction DNA helicase RuvB [Methylobacterium radiotolerans
           JCM 2831]
          Length = 351

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+ VGP G GK+ LA I + +      S     +        +   LE+ D+L  ++   
Sbjct: 60  VLFVGPPGLGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEI-- 117

Query: 127 FHIINSIHQ-------YDSSL-LMTARTFPVSW-GVCLPD----------------LCSR 161
            H +N   +        D  L L+           + LP                 L  R
Sbjct: 118 -HRLNPAVEEILYPAMEDYQLDLIIGEGPAARSVKIELPKFTLVGATTRAGLLTTPLRDR 176

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220
                 +++   + D LE+++ +      + +  + A  I +R   +   A +L+ ++ D
Sbjct: 177 F--GIPIRLEFYEIDELEQIVARGARVLGLGMSAEGANEIARRARGTPRIAGRLLRRVRD 234

Query: 221 NLALSRGMGITRSLAAEVLK 240
              ++    +TR++A   L+
Sbjct: 235 FAVVAEAETVTRAIADRALQ 254


>gi|168010129|ref|XP_001757757.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691033|gb|EDQ77397.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 394

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   + +S +   +
Sbjct: 119 PQKGVLLFGPPGTGKTLLAKAIAKESSAVFIN 150


>gi|158259371|dbj|BAF85644.1| unnamed protein product [Homo sapiens]
          Length = 1283

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 20/78 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSILIDT 107
           +  ++L G  GSGKS LA     ++                R  R  NI K+L+    + 
Sbjct: 592 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEA 651

Query: 108 R----KPVLLEDIDLLDF 121
                  VLL+D+DL+  
Sbjct: 652 VWMQPSVVLLDDLDLIAG 669



 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 924


>gi|157962501|ref|YP_001502535.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella
           pealeana ATCC 700345]
 gi|189044152|sp|A8H613|CLPX_SHEPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157847501|gb|ABV88000.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella
           pealeana ATCC 700345]
          Length = 425

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 20/110 (18%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVH-----SAIEQAV-----RLIDSWP-SWPS---RVVIL 69
           K++Q     P  L    DD ++        +  AV     RL ++ P          ++L
Sbjct: 59  KQDQDKLPTPHELRAHLDDYVIGQDKAKKVLAVAVYNHYKRLRNASPKDGVELGKSNILL 118

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           +GP+GSGK+ LA   +      R  ++  ++      T    + ED++ +
Sbjct: 119 IGPTGSGKTLLAETLA------RVLDVPFTMADATTLTEAGYVGEDVENI 162


>gi|149730661|ref|XP_001494791.1| PREDICTED: fidgetin [Equus caballus]
          Length = 759

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F   +  L +  +   +
Sbjct: 509 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIASSGLVAKWLGEAE 564

Query: 110 PVL 112
            ++
Sbjct: 565 KII 567


>gi|156743183|ref|YP_001433312.1| ATPase central domain-containing protein [Roseiflexus castenholzii
           DSM 13941]
 gi|156234511|gb|ABU59294.1| AAA ATPase central domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 459

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 54  RLIDS--WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           R++D     +  +R + L GP G+GK+ +A   ++          A  +D  +I    P+
Sbjct: 165 RMLDRIGPAANSARSLFLYGPPGNGKTTIAEGIANMLGGNVLIPYAVEVDGQIIKLFDPL 224

Query: 112 ---LLEDIDLLDFNDTQL 126
              ++E       ++  +
Sbjct: 225 NHQVVEQPAAAPTHEPAV 242


>gi|16331552|ref|NP_442280.1| Holliday junction DNA helicase RuvB [Synechocystis sp. PCC 6803]
 gi|2498877|sp|Q57396|RUVB_SYNY3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|1001619|dbj|BAA10350.1| Holliday junction DNA helicase; RuvB [Synechocystis sp. PCC 6803]
 gi|1256590|gb|AAA96396.1| RuvB [Synechocystis sp. PCC 6803]
          Length = 361

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ LA I +++ +       A +L+     T   + L+  D+L  ++   
Sbjct: 77  LLLYGPPGLGKTTLALILAEEMQVRCKITAAPALERPRDITGLLLALQPGDILFIDEI-- 134

Query: 127 FHIINSIHQY 136
            H +N + + 
Sbjct: 135 -HRLNRLTEE 143


>gi|116491207|ref|YP_810751.1| recombination factor protein RarA [Oenococcus oeni PSU-1]
 gi|116091932|gb|ABJ57086.1| Recombination protein MgsA [Oenococcus oeni PSU-1]
          Length = 445

 Score = 39.0 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 23/174 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL-----------IDTRKPVLL 113
           +I  GP G GK+ LA I + +S++    FS     +  I               R  V +
Sbjct: 55  MIFWGPPGVGKTTLAEIIAHRSKAKFITFSAATSGIKEIRKIMKDAENNRQFGVRTIVFI 114

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ +    L SR K   + ++   
Sbjct: 115 DEIHRFNKAQQDSFLPY---VEKGSIILIGATTENPSFEINSA-LLSRSKVFVLRQLKSS 170

Query: 174 DDDFLEKVIVKM---FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
           D   L +  +K    FA ++I I  +    I          A   ++ ++   L
Sbjct: 171 DIVKLLENALKNPHGFAKQKISISSRTLQLIANFAN---GDARTALNTLEMAVL 221


>gi|326514766|dbj|BAJ99744.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 329

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 112 PPKGVILYGEPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 163


>gi|324506159|gb|ADY42638.1| Nuclear valosin-containing protein-like protein [Ascaris suum]
          Length = 812

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   ++++     S     L S+ +   +  +
Sbjct: 576 ILLCGPPGCGKTLLAKAIANETGMNFISVKGPELLSMYVGESERAV 621


>gi|320585809|gb|EFW98488.1| RNA polymerase 2 transcription factor related protein [Grosmannia
            clavigera kw1407]
          Length = 1736

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 68   ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
            +L GP G+GK+ LA   + +  ++     A S++ +
Sbjct: 1467 LLYGPPGTGKTLLAKAVAKQGGASMIEVSAASINDM 1502


>gi|297817718|ref|XP_002876742.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322580|gb|EFH53001.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 729

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P R++ ++GPSGSGK+ L N+ + +  
Sbjct: 104 PGRLLAIMGPSGSGKTTLLNVLAGQLG 130


>gi|297273389|ref|XP_002800610.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 2 [Macaca
           mulatta]
          Length = 422

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 202 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 249


>gi|297616334|ref|YP_003701493.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144171|gb|ADI00928.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 600

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 43/210 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GP G+GK+ +A   + ++    FS        + +                     
Sbjct: 193 VLLYGPPGTGKTLMARAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFENAKKNAPCI 252

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +               +  L  +   ++     +  ++M     P      L
Sbjct: 253 VFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFSTNEGIIVMAGTNRPDILDPAL 312

Query: 156 PDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + I  PD    E ++      + +     ++  I +R       A
Sbjct: 313 ------LRPGRFDRHIVIDRPDVKGREAILKVHAEGKPLAPGVDMSV-IAKRTP-GFTGA 364

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             L + M+  AL       + +  E L++ 
Sbjct: 365 -DLANVMNEAALLSARRNKKEITMEELEDA 393


>gi|229148475|ref|ZP_04276732.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1550]
 gi|228635017|gb|EEK91589.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1550]
          Length = 585

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 210 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 269

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 270 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 320

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 321 A-DLENLLNEAALVAAR 336


>gi|224373744|ref|YP_002608116.1| transporter [Nautilia profundicola AmH]
 gi|223588716|gb|ACM92452.1| transporter [Nautilia profundicola AmH]
          Length = 567

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 18/122 (14%)

Query: 19  DQPKNKEEQLFFSFPRCLGISRDDLLVHSA---IEQAVRLIDSWPSWPSRVVILVGPSGS 75
            +PK   +Q  F  P  + I       + +   ++ A   I      P+++  L+G SG 
Sbjct: 333 TEPKFPHKQNPFENPVQIEIQNISFKYNESDWILKNASAAIR-----PNKITALIGASGG 387

Query: 76  GKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH---II 130
           GK+ LA I +               S   I +D  +    E++ L+   +T+LF+   + 
Sbjct: 388 GKTTLAKIIAGFFTPNEGDIKYNGVSFKEIGLDKIR----ENVSLI-LQETRLFNDTLLF 442

Query: 131 NS 132
           N 
Sbjct: 443 NL 444


>gi|155212694|gb|ABT17415.1| bacterio-opsin-associated chaperone [Halorubrum sp. TP009]
          Length = 694

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P   V+L GP G+GK+ LA   +  S +         L    +   +  + +
Sbjct: 460 PPSGVLLYGPPGTGKTLLARAAASLSDANFIPVNGPELLDKYVGASEQAVRD 511



 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 16/73 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDTRKP 110
           ++L GP GSGK+ L    +  + ++     A  L                +++       
Sbjct: 212 LLLHGPRGSGKTTLVEAVAAATDASLVRTSAARLRGERASDQSDGLDRVVEAVPAGEPTV 271

Query: 111 VLLEDIDLLDFND 123
           VLL+D++ L  +D
Sbjct: 272 VLLDDLEALGADD 284


>gi|150865438|ref|XP_001384655.2| ABC transporter [Scheffersomyces stipitis CBS 6054]
 gi|149386694|gb|ABN66626.2| ABC transporter [Scheffersomyces stipitis CBS 6054]
          Length = 1476

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
               +  ID W   P ++  L+G +G+GK+ L N  SD+  +   ++  + ++   +D 
Sbjct: 851 NRIILDDIDGWVK-PGQITALMGATGAGKTTLLNAISDRLTAGVVTDGVRMVNGRPLDA 908


>gi|110433413|gb|ABG74388.1| DnaA [Rickettsia helvetica]
          Length = 199

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDF 121
           +   W  K  +     I  S +  +    K                   ++++DI  +  
Sbjct: 123 HAIGWYIKQNNPNRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|146311073|ref|YP_001176147.1| recombination factor protein RarA [Enterobacter sp. 638]
 gi|145317949|gb|ABP60096.1| Recombination protein MgsA [Enterobacter sp. 638]
          Length = 447

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 24/138 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113
           +IL GP G+GK+ LA + +  + +                  I ++  +     R  + +
Sbjct: 53  MILWGPPGTGKTTLAEVIARYADADVERLSAVTSGVKEIREAIERARQNRNAGRRTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  +   + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIFFIGATTENPSFELNSA-LLSR---ARVYLLK 163

Query: 172 LPDDDFLEKVIVKMFADR 189
               + +E+V+ +   D+
Sbjct: 164 PLTTEDIEQVLTQAMEDK 181


>gi|56416489|ref|YP_153563.1| Holliday junction DNA helicase B [Anaplasma marginale str. St.
           Maries]
 gi|81821306|sp|Q5PBM1|RUVB_ANAMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|56387721|gb|AAV86308.1| holliday junction DNA helicase [Anaplasma marginale str. St.
           Maries]
          Length = 331

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA+I + + +    S     L            L+ +D+L  +
Sbjct: 52  PMDHVLLYGPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQPMDVLFID 111

Query: 123 DTQLFHIINSIHQYDSSLLMTA 144
           +    H +N   +    +L +A
Sbjct: 112 EI---HRLNRNIEE---VLYSA 127


>gi|4505725|ref|NP_000457.1| peroxisome biogenesis factor 1 [Homo sapiens]
 gi|8134613|sp|O43933|PEX1_HUMAN RecName: Full=Peroxisome biogenesis factor 1; AltName:
           Full=Peroxin-1; AltName: Full=Peroxisome biogenesis
           disorder protein 1
 gi|2655141|gb|AAB87880.1| peroxisome biogenesis disorder protein 1 [Homo sapiens]
 gi|2827156|gb|AAB99758.1| peroxisome biogenesis gene 1 [Homo sapiens]
 gi|6015438|dbj|BAA85162.1| PEX1 [Homo sapiens]
 gi|23242696|gb|AAH35575.1| Peroxisomal biogenesis factor 1 [Homo sapiens]
 gi|51094904|gb|EAL24149.1| peroxisome biogenesis factor 1 [Homo sapiens]
 gi|119597246|gb|EAW76840.1| peroxisome biogenesis factor 1, isoform CRA_a [Homo sapiens]
 gi|123980036|gb|ABM81847.1| peroxisome biogenesis factor 1 [synthetic construct]
          Length = 1283

 Score = 39.0 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 20/78 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSILIDT 107
           +  ++L G  GSGKS LA     ++                R  R  NI K+L+    + 
Sbjct: 592 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEA 651

Query: 108 R----KPVLLEDIDLLDF 121
                  VLL+D+DL+  
Sbjct: 652 VWMQPSVVLLDDLDLIAG 669



 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 924


>gi|325117286|emb|CBZ52838.1| 26S proteasome regulatory subunit S4 like AAA ATpase, related
           [Neospora caninum Liverpool]
          Length = 375

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 156 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGGELVQKYIGEGSRMVRE 203


>gi|322507320|gb|ADX02774.1| IstB [Acinetobacter baumannii 1656-2]
          Length = 254

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-----------------RSTRFSNIAKSLDSIL--IDT 107
           V+L+G  G+GK+ LA     ++                  +      +     I   +  
Sbjct: 95  VVLIGGPGTGKTHLATAIGTQAVMHLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLY 154

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
              V+L+++  L F+ T    LFH+++ +++  +S+++T       W 
Sbjct: 155 ADLVILDELGYLPFSQTGGALLFHLLSKLYE-KTSVILTTNLSFSEWS 201


>gi|310825776|ref|YP_003958133.1| hypothetical protein ELI_0145 [Eubacterium limosum KIST612]
 gi|308737510|gb|ADO35170.1| hypothetical protein ELI_0145 [Eubacterium limosum KIST612]
          Length = 323

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 24/119 (20%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------------TRK 109
            G  G GK+ ++N  ++      ++ I  +   ++ D                    T  
Sbjct: 185 TGKPGVGKTFMSNCVANALIGQGYNVIYITAAHLVQDIQSKIFNDNIPINEIYSPLFTAD 244

Query: 110 PVLLEDIDLL---DFNDTQLFHIIN-SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
            ++++D       DF+  QLF +IN  + ++   +L T  T P         L SR++ 
Sbjct: 245 LLIIDDFGAEFYSDFSKKQLFEVINTRLQEHKKIILSTNLTMPQILENYDERLTSRIRG 303


>gi|307106438|gb|EFN54684.1| 26S proteasome AAA-ATPase subunit RPT6a [Chlorella variabilis]
          Length = 349

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 128 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGGELVQKYIGEGSRMVRE 175


>gi|298709371|emb|CBJ31305.1| putative; AAA family ATP ase [Ectocarpus siliculosus]
          Length = 513

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           ++L GP G+GK+ +    + +S +T FS  A SL
Sbjct: 275 LLLFGPPGTGKTLIGKAIAHQSGATFFSISASSL 308


>gi|294786969|ref|ZP_06752223.1| ATPase, AAA family [Parascardovia denticolens F0305]
 gi|315226608|ref|ZP_07868396.1| replication-associated recombination protein A [Parascardovia
           denticolens DSM 10105]
 gi|294485802|gb|EFG33436.1| ATPase, AAA family [Parascardovia denticolens F0305]
 gi|315120740|gb|EFT83872.1| replication-associated recombination protein A [Parascardovia
           denticolens DSM 10105]
          Length = 487

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 23/136 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ LA I + +S           +  K L  +L  +R+ ++ E  + + F
Sbjct: 62  IILFGPPGVGKTTLAYIAAHESGRAFEELSAVIDGVKELREVLARSRQRLVAEGKETVLF 121

Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            D     +         +LL          + A T   S+ +  P L SR   + VVK+ 
Sbjct: 122 IDE----VHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIISP-LLSR---SVVVKLE 173

Query: 172 LPDDDFLEKVIVKMFA 187
               + ++ ++ +   
Sbjct: 174 ALSQESIKAIVNRALR 189


>gi|289618330|emb|CBI55054.1| unnamed protein product [Sordaria macrospora]
          Length = 1130

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 53  VRLIDSWPSWPSRVVI-LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           V  ID  P  P   ++ +VGP G GK+ L   +  +       +    +  +    ++  
Sbjct: 58  VPAIDRVPDEPPPRLVAIVGPPGVGKTTLLKSFIRRYAKETIQDPVGPITVVTSKKQRLT 117

Query: 112 LLE 114
            +E
Sbjct: 118 FIE 120


>gi|226294184|gb|EEH49604.1| cell division control protein [Paracoccidioides brasiliensis Pb18]
          Length = 820

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 253 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 312

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 313 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNS---V 369

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 370 DPALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLAEDV 410


>gi|148907029|gb|ABR16658.1| unknown [Picea sitchensis]
          Length = 398

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 171 PPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIRE 222


>gi|237831913|ref|XP_002365254.1| 26S protease regulatory subunit 8, putative [Toxoplasma gondii
           ME49]
 gi|211962918|gb|EEA98113.1| 26S protease regulatory subunit 8, putative [Toxoplasma gondii
           ME49]
 gi|221486895|gb|EEE25141.1| 26S protease regulatory subunit, putative [Toxoplasma gondii GT1]
 gi|221506585|gb|EEE32202.1| 26S protease regulatory subunit, putative [Toxoplasma gondii VEG]
          Length = 409

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 190 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGGELVQKYIGEGSRMVRE 237


>gi|218440504|ref|YP_002378833.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
 gi|218173232|gb|ACK71965.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424]
          Length = 616

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 197 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCI 256

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 257 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 316

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD    ++++      R   +   +    I +R       
Sbjct: 317 ------LRPGRFDRQVVVDRPDYAGRQEILKVHA--RGKTLAPDVDLDKIARRTP-GFTG 367

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 368 A-DLSNLLNEAAILAARRNLT 387


>gi|49481747|ref|YP_038449.1| recombination factor protein RarA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196034307|ref|ZP_03101716.1| ATPase, AAA family [Bacillus cereus W]
 gi|196039170|ref|ZP_03106476.1| ATPase, AAA family [Bacillus cereus NVH0597-99]
 gi|49333303|gb|AAT63949.1| ATPase, AAA family [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|195992849|gb|EDX56808.1| ATPase, AAA family [Bacillus cereus W]
 gi|196029797|gb|EDX68398.1| ATPase, AAA family [Bacillus cereus NVH0597-99]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            ++ L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEEDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|83592982|ref|YP_426734.1| hypothetical protein Rru_A1647 [Rhodospirillum rubrum ATCC 11170]
 gi|83575896|gb|ABC22447.1| hypothetical protein Rru_A1647 [Rhodospirillum rubrum ATCC 11170]
          Length = 1491

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 30/169 (17%)

Query: 60  PSWP---SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           P W    S+ +++ G +GSGKS L      +  +     +     +++       +L  +
Sbjct: 318 PHWTLLNSQSLLISGAAGSGKSHLLADACARQLAAGRPALMVLGGTLVDAEPWDQILRAL 377

Query: 117 DLLDFNDT-QLFHIINSIHQ-YDSSLLMTART---------FPVSWGVCLPD-------- 157
           DL    +  Q   ++N+  +      L+             +P      L D        
Sbjct: 378 DLPRHLEVGQFLGVLNAAGEAAGVRALIAIDALNEKSGQAIWPERLTGLLHDIKDYPWVA 437

Query: 158 --LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
             L  R     ++     DD  L ++  + F+        ++  Y+ QR
Sbjct: 438 VVLSCRTTYLELIVPDTLDDTKLPRITHRGFSV------AEVRDYLRQR 480


>gi|51891370|ref|YP_074061.1| hypothetical protein STH232 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855059|dbj|BAD39217.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 272

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           VV LVGP+GSGKS  A I + +++     +    +D
Sbjct: 3   VVALVGPAGSGKSHRAQIVAYQNQCELIVDDGLLID 38


>gi|30264469|ref|NP_846846.1| recombination factor protein RarA [Bacillus anthracis str. Ames]
 gi|47529927|ref|YP_021276.1| recombination factor protein RarA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187290|ref|YP_030542.1| recombination factor protein RarA [Bacillus anthracis str. Sterne]
 gi|65321766|ref|ZP_00394725.1| COG2256: ATPase related to the helicase subunit of the Holliday
           junction resolvase [Bacillus anthracis str. A2012]
 gi|167636495|ref|ZP_02394792.1| ATPase, AAA family [Bacillus anthracis str. A0442]
 gi|167638625|ref|ZP_02396901.1| ATPase, AAA family [Bacillus anthracis str. A0193]
 gi|170689631|ref|ZP_02880813.1| ATPase, AAA family [Bacillus anthracis str. A0465]
 gi|177653256|ref|ZP_02935508.1| ATPase, AAA family [Bacillus anthracis str. A0174]
 gi|190566921|ref|ZP_03019837.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I]
 gi|227817178|ref|YP_002817187.1| ATPase, AAA family [Bacillus anthracis str. CDC 684]
 gi|229603735|ref|YP_002868686.1| ATPase, AAA family [Bacillus anthracis str. A0248]
 gi|254684155|ref|ZP_05148015.1| recombination factor protein RarA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724674|ref|ZP_05186457.1| recombination factor protein RarA [Bacillus anthracis str. A1055]
 gi|254736502|ref|ZP_05194208.1| recombination factor protein RarA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741540|ref|ZP_05199227.1| recombination factor protein RarA [Bacillus anthracis str. Kruger
           B]
 gi|254751361|ref|ZP_05203398.1| recombination factor protein RarA [Bacillus anthracis str. Vollum]
 gi|254757693|ref|ZP_05209720.1| recombination factor protein RarA [Bacillus anthracis str.
           Australia 94]
 gi|30259127|gb|AAP28332.1| ATPase, AAA family [Bacillus anthracis str. Ames]
 gi|47505075|gb|AAT33751.1| ATPase, AAA family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181217|gb|AAT56593.1| ATPase, AAA family [Bacillus anthracis str. Sterne]
 gi|167513473|gb|EDR88843.1| ATPase, AAA family [Bacillus anthracis str. A0193]
 gi|167528088|gb|EDR90885.1| ATPase, AAA family [Bacillus anthracis str. A0442]
 gi|170666401|gb|EDT17182.1| ATPase, AAA family [Bacillus anthracis str. A0465]
 gi|172081538|gb|EDT66610.1| ATPase, AAA family [Bacillus anthracis str. A0174]
 gi|190561912|gb|EDV15881.1| ATPase, AAA family [Bacillus anthracis Tsiankovskii-I]
 gi|227006926|gb|ACP16669.1| ATPase, AAA family [Bacillus anthracis str. CDC 684]
 gi|229268143|gb|ACQ49780.1| ATPase, AAA family [Bacillus anthracis str. A0248]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            ++ L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEEDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|328774431|gb|EGF84468.1| hypothetical protein BATDEDRAFT_85172 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 747

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P R ++L GP G+GK+ LA   + ++ +   
Sbjct: 233 PPRGILLFGPPGTGKTLLARAVAYETSAHVI 263


>gi|323451377|gb|EGB07254.1| hypothetical protein AURANDRAFT_14060 [Aureococcus anophagefferens]
          Length = 221

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+L GPSG+GK+ LA   +D+++    S  A +   +L+      + +
Sbjct: 36  RGVLLTGPSGTGKTLLARAVADEAQCAFLSCSASAFVELLVGRGAARVRD 85


>gi|294788556|ref|ZP_06753798.1| magnesium chelatase, subunit ChlI family [Simonsiella muelleri ATCC
           29453]
 gi|294483433|gb|EFG31118.1| magnesium chelatase, subunit ChlI family [Simonsiella muelleri ATCC
           29453]
          Length = 442

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 23/169 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL G +G GK+ LA I ++   +   S  A    S + + R+ VL  ++       T +
Sbjct: 56  MILWGATGVGKTTLAQIIANSFDAQFISLSAVF--SGVKEIREAVLKAELAWQQGRRTII 113

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V    L SR   A+V  ++  
Sbjct: 114 FVDEVHRFNKAQQ-DAFLPHVESGLITFIGATTENPSFEVNAA-LLSR---ASVYTLNPL 168

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
               L  +  ++F     + I ++      I+Q  +        L++++
Sbjct: 169 TPAELTLLCQRVFRLPEYQGIMLESPAEQLIIQSADGDARRLLNLLEQI 217


>gi|289645265|ref|ZP_06477266.1| conserved hypothetical protein [Frankia symbiont of Datisca
           glomerata]
 gi|289504927|gb|EFD26024.1| conserved hypothetical protein [Frankia symbiont of Datisca
           glomerata]
          Length = 423

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 8/116 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------NIAKSLDSILIDTRKPVLLEDI 116
             VV+L GP   GKS L    + +  +           +         +   +PV +++ 
Sbjct: 24  EPVVLLQGPRSVGKSTLLRNLAGEVGAELVDLDDVAVRDAVARDPGTFVAGPRPVCIDEY 83

Query: 117 DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
             +      +   +N   +    +L T      +       L  RL    V  +S 
Sbjct: 84  QHVPLALDAIKAELNRDGRPGRFVL-TGSARHEALPQAAQALTGRLHRLPVYPLSQ 138


>gi|294954398|ref|XP_002788148.1| AAA ATPase, putative [Perkinsus marinus ATCC 50983]
 gi|239903363|gb|EER19944.1| AAA ATPase, putative [Perkinsus marinus ATCC 50983]
          Length = 713

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 20/97 (20%)

Query: 41  DDLLVHS-AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           +DL++   +       +   P  P  V+ L GP GSGK+ LA   + +     F   A  
Sbjct: 182 EDLIIRPISHRDVYENLGVSP--PVGVL-LHGPPGSGKTMLATAIAGELGCAWFKVSAPE 238

Query: 100 LDSILIDTRKP----------------VLLEDIDLLD 120
           + S +    +                 VL+++ID + 
Sbjct: 239 IVSGVSGESEATLRSLFATAVSNAPCIVLIDEIDAIC 275



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           V+L GP G GK+ LA   ++ S +   S     L
Sbjct: 477 VLLFGPPGCGKTLLAKAVANASNANFISVKGPEL 510


>gi|260947222|ref|XP_002617908.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720]
 gi|238847780|gb|EEQ37244.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720]
          Length = 809

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+ V++  GP G GK+ LA   +++SR+   S     L
Sbjct: 544 PAGVLM-WGPPGCGKTLLAKAVANESRANFISVKGPEL 580


>gi|257792051|ref|YP_003182657.1| ABC transporter-like protein [Eggerthella lenta DSM 2243]
 gi|257475948|gb|ACV56268.1| ABC transporter related [Eggerthella lenta DSM 2243]
          Length = 609

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 63  PSRVVILVGPSGSGKS----CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           P  +V LVGPSGSGKS     +A+ W     + R        D  L      +     D 
Sbjct: 392 PGSMVALVGPSGSGKSTVAKLIASQWEAAGGAVRIGGSDVR-DMPLSQVADAIAYVAQDN 450

Query: 119 LDFNDT 124
             F+DT
Sbjct: 451 YLFDDT 456


>gi|225684527|gb|EEH22811.1| cell division cycle protein [Paracoccidioides brasiliensis Pb03]
          Length = 820

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 253 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 312

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 313 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNS---V 369

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 370 DPALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLAEDV 410


>gi|238482649|ref|XP_002372563.1| sister chromatid cohesion factor (Chl12), putative [Aspergillus
           flavus NRRL3357]
 gi|220700613|gb|EED56951.1| sister chromatid cohesion factor (Chl12), putative [Aspergillus
           flavus NRRL3357]
          Length = 948

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 272 KVMLLCGPPGLGKTTLAHVCAKQAG 296


>gi|260831900|ref|XP_002610896.1| hypothetical protein BRAFLDRAFT_126283 [Branchiostoma floridae]
 gi|229296265|gb|EEN66906.1| hypothetical protein BRAFLDRAFT_126283 [Branchiostoma floridae]
          Length = 433

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 62/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R   + + KI                  R + +++ +
Sbjct: 328 DPALMRPGRLDRKIEFGLPDLEGR---SHIFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 369 RYELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403


>gi|270307967|ref|YP_003330025.1| Holliday junction DNA helicase subunit [Dehalococcoides sp. VS]
 gi|270153859|gb|ACZ61697.1| Holliday junction DNA helicase subunit [Dehalococcoides sp. VS]
          Length = 349

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTR----FSNIAKSLDSILIDTR----KPVLLEDIDL 118
           V+L GP G GK+ L++I + +            I +  D   I T       + +++I  
Sbjct: 59  VLLYGPPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHR 118

Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD----------------LCSR 161
           L  N  ++ +      +  +  +M  +     S  + LP                 L  R
Sbjct: 119 LSRNVEEVLYP---AMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDR 175

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221
             +  + ++   D++ +  ++ +      +  D+     I  R   +   A +L+ ++ +
Sbjct: 176 FGS--IFRLDFYDEEAIYDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRD 233

Query: 222 LALSRGMG-ITRSLAAEVLK 240
            A  +G G IT  +AAE L 
Sbjct: 234 YAQVKGNGLITGDIAAESLA 253


>gi|145603202|ref|XP_369262.2| hypothetical protein MGG_06202 [Magnaporthe oryzae 70-15]
 gi|145011482|gb|EDJ96138.1| hypothetical protein MGG_06202 [Magnaporthe oryzae 70-15]
          Length = 1129

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 53  VRLIDSWPSWPSRVVI-LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           V L+D  P  P   ++ +VGP G GK+ L      +      S+    +  +    ++  
Sbjct: 25  VPLVDRLPDEPPPRLVTIVGPPGVGKTTLLKSLVRRYAKETISDPQGPITVVTSKKQRLT 84

Query: 112 LLE 114
            LE
Sbjct: 85  FLE 87


>gi|119597247|gb|EAW76841.1| peroxisome biogenesis factor 1, isoform CRA_b [Homo sapiens]
          Length = 1227

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 820 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 867


>gi|148553805|ref|YP_001261387.1| recombination factor protein RarA [Sphingomonas wittichii RW1]
 gi|148498995|gb|ABQ67249.1| Recombination protein MgsA [Sphingomonas wittichii RW1]
          Length = 481

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 42/162 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILIDTRKPVLL 113
           ++L GP G+GK+ +A + +D                +      A++ +   I TR  + +
Sbjct: 101 LVLWGPPGTGKTTIARLLADAVGLRFAPVSAVFSGVADLKKIFAEAREHARIGTRTLLFV 160

Query: 114 EDIDLLDFNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
           ++I           H  N           +  + +L+  T              L SR  
Sbjct: 161 DEI-----------HRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNAA---LLSR-- 204

Query: 164 AATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQ 203
            A V+ ++  D   L K+I +     +R + + +     +V 
Sbjct: 205 -AQVLILNRLDAAALGKLIARAEEIEERALPLTEGAREALVA 245


>gi|75909397|ref|YP_323693.1| FtsH peptidase [Anabaena variabilis ATCC 29413]
 gi|75703122|gb|ABA22798.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC
           29413]
          Length = 628

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 47/205 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 268

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 328

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD     +V+     ++++     L   I +R       A
Sbjct: 329 ------LRPGRFDRQVTVDAPDIKGRLEVLQVHARNKKLDPSVSL-EAIARRTP-GFTGA 380

Query: 213 EKLVDKMDNLAL--SRGMG--ITRS 233
             L + ++  A+  +R     IT S
Sbjct: 381 -DLANLLNEAAILTARRRKEGITLS 404


>gi|73542280|ref|YP_296800.1| recombination factor protein RarA [Ralstonia eutropha JMP134]
 gi|72119693|gb|AAZ61956.1| Recombination protein MgsA [Ralstonia eutropha JMP134]
          Length = 446

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 20/135 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +IL GP G GK+ LA + +D   +   +              + ++        R  V +
Sbjct: 54  MILWGPPGVGKTTLARLMADAFDAEFIALSAVLSGVKDIREAVDRAEQFRAHGRRTLVFV 113

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +      + A T   S+ V    L SR   A V  +   
Sbjct: 114 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKSL 166

Query: 174 DDDFLEKVIVKMFAD 188
           DD  L ++  +   +
Sbjct: 167 DDAELTQLAQRASEE 181


>gi|37525039|ref|NP_928383.1| hypothetical protein plu1054 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784465|emb|CAE13349.1| pilQ [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 517

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 14/114 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           P  +++L GP+GSGKS     +  +         R   +    +  +    +  ++ D  
Sbjct: 224 PEGLIVLSGPTGSGKSTTLRTFCRQYLDRTGGKKRLLTVEDPPEGRIAGAIQTPIVCD-- 281

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
               ++  +    +        L              + DL S L A    +  
Sbjct: 282 --KSDEEAVRLAWHRALTSALRL-----DPDAVMPGEMRDLTSMLTAIYAAQTG 328


>gi|71027455|ref|XP_763371.1| vacuolar sorting protein 4 [Theileria parva strain Muguga]
 gi|68350324|gb|EAN31088.1| vacuolar sorting protein 4, putative [Theileria parva]
          Length = 362

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 64  SRVVILVGPSGSGKSCLANI 83
              ++L GP G+GK+ LAN 
Sbjct: 121 YNCILLYGPPGTGKTHLANA 140


>gi|70992571|ref|XP_751134.1| AAA family ATPase [Aspergillus fumigatus Af293]
 gi|66848767|gb|EAL89096.1| AAA family ATPase, putative [Aspergillus fumigatus Af293]
          Length = 802

 Score = 39.0 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 547 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 586


>gi|322491030|emb|CBZ26294.1| proteasome regulatory ATPase subunit [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 409

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 189 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRE 236


>gi|295103888|emb|CBL01432.1| Holliday junction DNA helicase, RuvB subunit [Faecalibacterium
           prausnitzii SL3/3]
          Length = 351

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 61/234 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   ++L GP G GK+ LA I +++           +++           L++ D+L  +
Sbjct: 58  PVDHILLYGPPGLGKTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFID 117

Query: 123 DTQLFHIINSIHQYDSSL----------LMTARTFPVS-WGVCLPD-------------- 157
           +     I     Q +  L          +M  +        + LP               
Sbjct: 118 E-----IHRLSRQVEEVLYPALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQIT 172

Query: 158 --LCSRLKAATVVKISLPDDDFLEKVIVKMFA--DRQIFID------------KKLAAYI 201
             L  R      +++  PD+  L ++I++     D+ I  +             ++A   
Sbjct: 173 GPLRDRFGVLLKLELYSPDE--LSRIIMRSAGILDQPITPEGAYELAKCSRGTPRVANRF 230

Query: 202 VQRMERSLVFAE--KLVDKMDNLALSRGM---------GITRSLAAEVLKETQQ 244
           ++R+ R         ++D+ D   L              + RSL   +++    
Sbjct: 231 LKRI-RDFATVLGDGIIDR-DVALLGLKRMDVDALGLDELDRSLLRAIIEMYNG 282


>gi|260221544|emb|CBA30215.1| hypothetical protein Csp_C22430 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 733

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 32  FPRCLGISRDDL-LVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS 85
                 +  +D   V    E A  L        +R      ++L GP G+GK+ LA + +
Sbjct: 267 LSSKSSLHLEDFAFVA---EDAHMLCRLLQHAVARKEAGVNILLYGPPGTGKTELAKVIA 323

Query: 86  DKSRSTRFSNIAKSLDSILIDTRK 109
                  F       D   +  R 
Sbjct: 324 QHVGLELFEVEYADRDGNSLSGRD 347


>gi|218188506|gb|EEC70933.1| hypothetical protein OsI_02523 [Oryza sativa Indica Group]
          Length = 702

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 38/190 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTRKPVL 112
           V+LVGP G+GK+ LA   + ++    FS      +                    R P +
Sbjct: 253 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 312

Query: 113 L--EDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--P 156
           +  ++ID +  +              QL   ++   Q +  +++ A  FP S    L  P
Sbjct: 313 IFMDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP 372

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
               R      + +  PD +   +++    +   +     +   I+ R       A  L 
Sbjct: 373 ---GRFD--RHIVVPNPDVEGRRQILESHMSK--VLKSDDVDLMIIARGTPGFSGA-DLA 424

Query: 217 DKMDNLALSR 226
           + ++  AL  
Sbjct: 425 NLVNVAALKA 434


>gi|158254352|gb|AAI54337.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1a [Danio
           rerio]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|154281721|ref|XP_001541673.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150411852|gb|EDN07240.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 978

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 707 PGLLLYGPPGTGKTMLAKAVARQSGATVLE 736


>gi|149054555|gb|EDM06372.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_a
           [Rattus norvegicus]
          Length = 385

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 196 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 243


>gi|37932204|gb|AAP72958.1| 26S proteasome subunit 7-like protein [Lactuca sativa]
          Length = 426

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 261 KACIVFFDEVDAIGGARFDDGAGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPD+ SR
Sbjct: 321 DPALLRPGRLDRKVEFGLPDMESR 344


>gi|37932196|gb|AAP72957.1| 26S proteasome subunit 7-like protein [Lactuca sativa]
          Length = 426

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++          
Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147
                  +++D +                  +  I+N +  +D+     +LM        
Sbjct: 261 KACIVFFDEVDAIGGARFDDGAGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPD+ SR
Sbjct: 321 DPALLRPGRLDRKVEFGLPDMESR 344


>gi|118576017|ref|YP_875760.1| AAA ATPase [Cenarchaeum symbiosum A]
 gi|118194538|gb|ABK77456.1| AAA ATPase [Cenarchaeum symbiosum A]
          Length = 397

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
            WP R ++L GP G GK+ LA   + +      +  A S+
Sbjct: 147 GWP-RGILLYGPPGCGKTILAAATASEIDGYFINVDAASM 185


>gi|2077957|emb|CAA73318.1| ATPase [Arabidopsis thaliana]
          Length = 634

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 231 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 277


>gi|118393771|ref|XP_001029293.1| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|89283465|gb|EAR81630.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 702

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+ V+ L GP G GK+ LA   ++ S++   S     L
Sbjct: 460 PAGVL-LYGPPGCGKTLLAKAVANASKANFISVKGPEL 496


>gi|71000273|ref|XP_754831.1| proteasome regulatory particle subunit Rpt1 [Aspergillus fumigatus
           Af293]
 gi|119492632|ref|XP_001263660.1| proteasome regulatory particle subunit Rpt1, putative [Neosartorya
           fischeri NRRL 181]
 gi|66852468|gb|EAL92793.1| proteasome regulatory particle subunit Rpt1, putative [Aspergillus
           fumigatus Af293]
 gi|119411820|gb|EAW21763.1| proteasome regulatory particle subunit Rpt1, putative [Neosartorya
           fischeri NRRL 181]
 gi|159127842|gb|EDP52957.1| proteasome regulatory particle subunit Rpt1, putative [Aspergillus
           fumigatus A1163]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|332716452|ref|YP_004443918.1| Holliday junction DNA helicase RuvB [Agrobacterium sp. H13-3]
 gi|325063137|gb|ADY66827.1| Holliday junction DNA helicase RuvB [Agrobacterium sp. H13-3]
          Length = 349

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 29/198 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+ VGP G GK+ LA I + +      S     +            LE+ D+L  ++   
Sbjct: 59  VLFVGPPGLGKTTLAQIMAKELGVNFKSTSGPVIAKAGDLAALLTNLEERDVLFIDEI-- 116

Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAATV---- 167
            H +N   +        D  L +     P +  V + DL         +RL   T     
Sbjct: 117 -HRLNPAVEEILYPAMEDFQLDLIIGEGPAARSVKI-DLSKFTLVAATTRLGLLTTPLRD 174

Query: 168 -----VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DN 221
                V+++    D LE ++ +      + +    A  I +R   +   A +L+ ++ D 
Sbjct: 175 RFGIPVRLAFYTVDELELIVRRGARLMGLNMTDDGAREIARRARGTPRIAGRLLRRVRDF 234

Query: 222 LALSRGMGITRSLAAEVL 239
             ++R   +TR +A E L
Sbjct: 235 AEVARAEAVTREIADEAL 252


>gi|315046434|ref|XP_003172592.1| 26S protease regulatory subunit 7 [Arthroderma gypseum CBS 118893]
 gi|311342978|gb|EFR02181.1| 26S protease regulatory subunit 7 [Arthroderma gypseum CBS 118893]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|302338771|ref|YP_003803977.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM
           11293]
 gi|301635956|gb|ADK81383.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM
           11293]
          Length = 646

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 56/217 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++    F         + +                     
Sbjct: 232 ILLVGPPGTGKTLLARAVAGEAGVVFFRMSGADFVEMFVGVGAARVRDLFRQAREKAPCI 291

Query: 111 VLLEDIDLLDFN-----------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL- 155
           + ++++D +  +           +  L  +   ++        +L+ A   P      L 
Sbjct: 292 IFVDELDAIGKSRANNIGGNDEREQTLNQLLVEMDGFDATSGVILLAATNRPELLDPALL 351

Query: 156 -------------PDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA-- 199
                        PDL  R     ++ I   D    + V + ++ A    F+   LA   
Sbjct: 352 RPGRFDRQVLVDRPDLEGR---EAILNIHAKDVKLDKSVDLKEIAASTPGFVGSDLANII 408

Query: 200 ----YIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230
                +  R  R+LV    L + ++     L +   +
Sbjct: 409 NEAALLAVRGGRNLVTMADLHEAIEKTVAGLQKKNRL 445


>gi|302841222|ref|XP_002952156.1| hypothetical protein VOLCADRAFT_92777 [Volvox carteri f.
           nagariensis]
 gi|300262421|gb|EFJ46627.1| hypothetical protein VOLCADRAFT_92777 [Volvox carteri f.
           nagariensis]
          Length = 840

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 19/82 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P+  V++ GPSG+GKS LA     +  +         +D +  D     +          
Sbjct: 550 PNAAVLIAGPSGNGKSLLARALRSELDAAYVHVPPNLVDRLAQDPGGAEVVLRSVARVAT 609

Query: 113 ---------LEDIDLLDFNDTQ 125
                    +ED+D L   +  
Sbjct: 610 HLPGPVVVHIEDVDRLASVEAT 631


>gi|297845668|ref|XP_002890715.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336557|gb|EFH66974.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 525

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 25/174 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-- 122
             ++  GP G+GK+ +A    + S+                       +E    L+    
Sbjct: 138 PSIVFWGPPGTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGK 197

Query: 123 -DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N         + +  S L + A T   S+ +  P L SR     V+ 
Sbjct: 198 KRTVLFMDEVHRFNKSQQDSFLPVIEDGSILFIGATTENPSFHLITP-LLSR---CRVLT 253

Query: 170 ISLPDDDFLEKVIVKMFAD--RQIF----IDKKLAAYIVQRMERSLVFAEKLVD 217
           ++    + +E ++ +   D  R +     +D  +  ++    +     A   ++
Sbjct: 254 LNPLKPNHVETLLRRAVDDSERGLSNSVEVDDSVIEFLAYNCDGDARVALNALE 307


>gi|295114827|emb|CBL35674.1| phage DNA replication protein (predicted replicative helicase
           loader) [butyrate-producing bacterium SM4/1]
          Length = 214

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 51  QAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDKSR-----------STRFSNIA 97
            A   ++ W    +  +  +L G  G+GKS LA   ++              +   +++A
Sbjct: 46  TAHFYVEHWEDMKAGNIGYLLWGSVGTGKSYLAGCIANALMEKEISVRMTNFALILNDLA 105

Query: 98  KSLDS-----ILIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFPV 149
            + +        +     ++L+D  +    +  L  + N I   ++    L++T      
Sbjct: 106 ATFEGKNEYISNLCRYPLLILDDFGMERGTEYGLEQVYNVIDSRYRSGKPLIVTTNLTLT 165

Query: 150 SWG 152
              
Sbjct: 166 ELQ 168


>gi|289621345|emb|CBI52128.1| unnamed protein product [Sordaria macrospora]
          Length = 368

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 67/198 (33%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 145 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 204

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 205 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 264

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +++    +   + I+  +           
Sbjct: 265 DPAL------LRAGRLDRKIEIPLPNEVGRLEILKIHAS--GVVIEGDI----------D 306

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 307 YESVVKMSDGLNGADLRN 324


>gi|283787429|ref|YP_003367294.1| transcription regulator of PTS system [Citrobacter rodentium
           ICC168]
 gi|282950883|emb|CBG90560.1| putative transcription regulator of PTS system [Citrobacter
           rodentium ICC168]
          Length = 867

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 48  AIEQAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105
           ++ +AV L  S   +P   +  ++ G SG GKS LA++    +         K    +  
Sbjct: 95  SLAEAVALCRSAVDYPGDGLPVLISGESGVGKSHLASLIYQYAIGRGVIAADKPFVELNC 154

Query: 106 DTRK 109
               
Sbjct: 155 ADYA 158


>gi|227497468|ref|ZP_03927697.1| ATP-dependent protease ATP-binding subunit [Actinomyces
           urogenitalis DSM 15434]
 gi|226833042|gb|EEH65425.1| ATP-dependent protease ATP-binding subunit [Actinomyces
           urogenitalis DSM 15434]
          Length = 430

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +             A +    + +  + +LL+ I   D +
Sbjct: 116 ILLLGPTGTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGD 173


>gi|221115745|ref|XP_002160777.1| PREDICTED: similar to Werner helicase interacting protein 1 [Hydra
           magnipapillata]
          Length = 527

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
             +IL GP G GK+  A+I S + +      RF  ++ ++  I     +  + ++   L 
Sbjct: 145 PSLILWGPPGCGKTSFAHIISRRCKESDSKYRFVTLSATMAGINDVKDEIKVAKNEKKLT 204

Query: 121 FNDTQLF----HIINSIHQY 136
              T LF    H  N + Q 
Sbjct: 205 SRKTVLFIDEIHRFNKMQQD 224


>gi|167045683|gb|ABZ10331.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine crenarchaeote HF4000_APKG10L15]
          Length = 398

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
            WP R ++L GP G GK+ LA   + +      +    S+
Sbjct: 148 GWP-RGILLYGPPGCGKTVLAAATAHELDGYFINVDGSSM 186


>gi|189485650|ref|YP_001956591.1| ABC transporter lipoprotein-releasing system ATP-binding component
           LolD [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287609|dbj|BAG14130.1| ABC transporter lipoprotein-releasing system ATP-binding component
           LolD [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 220

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 16/64 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             + + L GPSG+GKS L +I                L  +   T   + ++D+D    +
Sbjct: 32  SGQKITLTGPSGAGKSTLIHI----------------LGLMDRPTSGKIYIDDVDCFAGD 75

Query: 123 DTQL 126
           D  L
Sbjct: 76  DKYL 79


>gi|159124705|gb|EDP49823.1| AAA family ATPase, putative [Aspergillus fumigatus A1163]
          Length = 802

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 547 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 586


>gi|160934604|ref|ZP_02081990.1| hypothetical protein CLOLEP_03477 [Clostridium leptum DSM 753]
 gi|240147647|ref|ZP_04746248.1| replicative DNA helicase [Roseburia intestinalis L1-82]
 gi|156866057|gb|EDO59429.1| hypothetical protein CLOLEP_03477 [Clostridium leptum DSM 753]
 gi|257200142|gb|EEU98426.1| replicative DNA helicase [Roseburia intestinalis L1-82]
          Length = 280

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 51  QAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDKSR-----------STRFSNIA 97
            A   ++ W    +  +  +L G  G+GKS LA   ++              +   +++A
Sbjct: 112 TAHFYVEHWEDMKAGNIGYLLWGSVGTGKSYLAGCIANALMEKEISVRMTNFALILNDLA 171

Query: 98  KSLDS-----ILIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFPV 149
            + +        +     ++L+D  +    +  L  + N I   ++    L++T      
Sbjct: 172 ATFEGKNEYISNLCRYPLLILDDFGMERGTEYGLEQVYNVIDSRYRSGKPLIVTTNLTLT 231

Query: 150 SWG 152
              
Sbjct: 232 ELQ 234


>gi|149054558|gb|EDM06375.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_d
           [Rattus norvegicus]
          Length = 320

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 100 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 147


>gi|126179255|ref|YP_001047220.1| proteasome-activating nucleotidase [Methanoculleus marisnigri JR1]
 gi|125862049|gb|ABN57238.1| Proteasome-activating nucleotidase [Methanoculleus marisnigri JR1]
          Length = 390

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ +A   + +S++         L    I     ++ E
Sbjct: 169 PPKGILLYGPPGTGKTLIAKAVARQSQARFIRMSGSELVHKYIGEGAQLVRE 220


>gi|120404041|ref|YP_953870.1| ATPase central domain-containing protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956859|gb|ABM13864.1| AAA ATPase, central domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNIAKSLDSILI----DT 107
           P + VIL GP G+GK+  A   + +             +T    +  +L  +        
Sbjct: 211 PPKAVILFGPPGTGKTSFAKAVAGRLGWPFVEIFPSRLATPDVAMPTALREVFTNLNELD 270

Query: 108 RKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWG--V 153
              V +++++ +  +              +L  +I +  Q++  LL+ A     S     
Sbjct: 271 AAVVFIDEVEEIAGSRSGIPSDPAHGVTNELLKLIPTFRQHEERLLICATNSVRSLDSAF 330

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKV 181
             P    R     ++ +  PDD   + +
Sbjct: 331 LRP---GRFDY--IIPVGPPDDAARKAI 353


>gi|41053325|ref|NP_956327.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Danio
           rerio]
 gi|29436782|gb|AAH49471.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1a [Danio
           rerio]
          Length = 440

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269


>gi|25026924|ref|NP_736978.1| hypothetical protein CE0368 [Corynebacterium efficiens YS-314]
 gi|25027057|ref|NP_737111.1| putative insertion sequence ATP-binding protein [Corynebacterium
           efficiens YS-314]
 gi|25028019|ref|NP_738073.1| putative insertion element ATP-binding protein [Corynebacterium
           efficiens YS-314]
 gi|25029257|ref|NP_739311.1| putative transposase [Corynebacterium efficiens YS-314]
 gi|23492204|dbj|BAC17178.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|23492337|dbj|BAC17311.1| putative insertion sequence ATP-binding protein [Corynebacterium
           efficiens YS-314]
 gi|23493302|dbj|BAC18273.1| putative insertion element ATP-binding protein [Corynebacterium
           efficiens YS-314]
 gi|23494545|dbj|BAC19511.1| putative transposase [Corynebacterium efficiens YS-314]
          Length = 260

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 24/121 (19%)

Query: 59  WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104
           W + P+ ++IL  P+GSGK+ L       +    +S     +D +               
Sbjct: 102 WGADPTNLLILS-PTGSGKTYLTCAVGISACHNGYSVAYWRMDDLARRLAVTRIDTLEHE 160

Query: 105 -----IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
                +     ++L+D   +  ++     LF I+ +  +   + ++ +++ P  W   LP
Sbjct: 161 DMLAGLFGVDVLILDDFLTVGVDERTASDLFAIL-ANRENIHATIIGSQSTPGHWLDVLP 219

Query: 157 D 157
           D
Sbjct: 220 D 220


>gi|14289175|dbj|BAB59063.1| Pex1pG843D [Homo sapiens]
          Length = 1283

 Score = 39.0 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 20/78 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSILIDT 107
           +  ++L G  GSGKS LA     ++                R  R  NI K+L+    + 
Sbjct: 592 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEA 651

Query: 108 R----KPVLLEDIDLLDF 121
                  VLL+D+DL+  
Sbjct: 652 VWMQPSVVLLDDLDLIAG 669



 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 924


>gi|325095291|gb|EGC48601.1| ATPase family AAA domain-containing protein [Ajellomyces capsulatus
           H88]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 148 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 178


>gi|315122873|ref|YP_004063362.1| metalloprotease [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496275|gb|ADR52874.1| metalloprotease [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 660

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 66/208 (31%), Gaps = 54/208 (25%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 196 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCI 255

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++     +  +L+ A   P      L
Sbjct: 256 IFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDPAL 315

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----- 207
                 L+       + +  PD    E+++      R + +   +    ++ + R     
Sbjct: 316 ------LRPGRFDRQITVPNPDVVGRERILKVH--SRNVPLAPNVV---LKTIARGTPGF 364

Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLA 235
           S      LV   +  AL       R L 
Sbjct: 365 SGADLRNLV---NEAALVAARR-NRRLV 388


>gi|311272536|ref|XP_003133487.1| PREDICTED: fidgetin-like [Sus scrofa]
          Length = 806

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +  +   +
Sbjct: 556 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 611

Query: 110 PVL 112
            ++
Sbjct: 612 KII 614


>gi|302872057|ref|YP_003840693.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574916|gb|ADL42707.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 338

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 82/204 (40%), Gaps = 25/204 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDT----RKPVLLE 114
           P   V+L GP G GK+ LANI +++            I ++ D + I T       + ++
Sbjct: 50  PLDHVLLYGPPGLGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFID 109

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS-- 160
           +I  L+    ++  +  ++      +++       +  + LP             L S  
Sbjct: 110 EIHRLNRTIEEV--LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPL 167

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM- 219
           R +   + ++     + L +++++  +  +  I+K+    I +R   +   A +L+ ++ 
Sbjct: 168 RDRFGIIERLDYYTVEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLR 227

Query: 220 DNLALSRGMGITRSLAAEVLKETQ 243
           D   +     IT  +A   L+  +
Sbjct: 228 DYATVKHTGSITYEVAKNGLEMFE 251


>gi|300859209|ref|YP_003784192.1| cell division protein [Corynebacterium pseudotuberculosis FRC41]
 gi|300686663|gb|ADK29585.1| cell division protein [Corynebacterium pseudotuberculosis FRC41]
 gi|302206898|gb|ADL11240.1| Cell division protease ftsH-like protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302331465|gb|ADL21659.1| Cell division protein [Corynebacterium pseudotuberculosis 1002]
 gi|308277152|gb|ADO27051.1| Cell division protein [Corynebacterium pseudotuberculosis I19]
          Length = 667

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 57/210 (27%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 197 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFRQARENSP 256

Query: 111 --VLLEDIDLLDFN------------DTQLFHIINSIH-------QYDSSLLMTARTFPV 149
             + +++ID +               +  L    N +          +  ++M A   P 
Sbjct: 257 CIIFIDEIDAVGRQRGSGMGGGHDEREQTL----NQMLVEMDGFGDREGVIIMAATNRPD 312

Query: 150 SWGVCL--------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFI 193
                L              PDL  R +   V     P   D  +E +  +        +
Sbjct: 313 ILDPALLRPGRFDRQIPVSNPDLKGREQILRVHAKGKPFAPDADIESLARRTAGMSGADL 372

Query: 194 DKKL--AAYIVQRMERSLVFAEKLVDKMDN 221
              L  AA +  R+ ++++ A+ L +  D 
Sbjct: 373 ANVLNEAALLTARIGKTVITADALEEATDR 402


>gi|302762657|ref|XP_002964750.1| hypothetical protein SELMODRAFT_82645 [Selaginella moellendorffii]
 gi|300166983|gb|EFJ33588.1| hypothetical protein SELMODRAFT_82645 [Selaginella moellendorffii]
          Length = 1439

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R+++L+GP GSGKS L    + K
Sbjct: 192 PGRMMLLLGPPGSGKSTLLRALAGK 216


>gi|294789941|ref|ZP_06755162.1| DNA replication protein DnaC [Simonsiella muelleri ATCC 29453]
 gi|294482122|gb|EFG29828.1| DNA replication protein DnaC [Simonsiella muelleri ATCC 29453]
          Length = 279

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 24/109 (22%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSI-----LIDTRK 109
            S  +  +IL G  G+GK+ LA        +    S +++ +A     +        T +
Sbjct: 126 QSGKAGALILHGNKGTGKTHLACALLSMRKAQMGGSVQYATVADLFRKVRESKRFSSTPE 185

Query: 110 PVLLED---IDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTA 144
             L+E+    DLL  ++             LF ++N  ++     ++ +
Sbjct: 186 SELIEEYAKFDLLALDEIGNQRGDDDEKRILFDVLNKRYEKALPTVLVS 234


>gi|302507019|ref|XP_003015466.1| hypothetical protein ARB_06592 [Arthroderma benhamiae CBS 112371]
 gi|302658797|ref|XP_003021098.1| hypothetical protein TRV_04811 [Trichophyton verrucosum HKI 0517]
 gi|291179038|gb|EFE34826.1| hypothetical protein ARB_06592 [Arthroderma benhamiae CBS 112371]
 gi|291184977|gb|EFE40480.1| hypothetical protein TRV_04811 [Trichophyton verrucosum HKI 0517]
 gi|326472139|gb|EGD96148.1| proteasome-activating nucleotidase [Trichophyton tonsurans CBS
           112818]
 gi|326477000|gb|EGE01010.1| proteasome regulatory particle subunit Rpt1 [Trichophyton equinum
           CBS 127.97]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|307726373|ref|YP_003909586.1| AAA ATPase [Burkholderia sp. CCGE1003]
 gi|307586898|gb|ADN60295.1| AAA ATPase [Burkholderia sp. CCGE1003]
          Length = 461

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 35  CLGISRDDLLVHSAIEQ-AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
            +  +  + +   ++   AV  +++      R V+L GP+GSGK+ LA            
Sbjct: 151 DVRAAFANFVADMSLLDCAVAALNA-----GRPVMLYGPAGSGKTYLAERLGRLLGGAVP 205

Query: 94  SNIAKSLDSILIDTRKPVL 112
              A  +   +I    P+L
Sbjct: 206 IPYALYVAGDVIQIHDPLL 224


>gi|257094688|ref|YP_003168329.1| AAA ATPase central domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047212|gb|ACV36400.1| AAA ATPase central domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 439

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 19/187 (10%)

Query: 55  LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           L  ++ S     +IL GP G GK+ LA + +D   +  F  ++     +          E
Sbjct: 40  LATAFQSGQLHSMILWGPPGVGKTTLARLMADAFDAD-FMALSAVFSGVKDIRAAVARAE 98

Query: 115 DIDLLDFNDTQLF----HIINSIHQY------DSSLL--MTARTFPVSWGVCLPDLCSRL 162
               L    T LF    H  N   Q       +  LL  + A T   S+ V    L SR 
Sbjct: 99  TTRALSGRRTILFVDEVHRFNKAQQDAFLPYVEGGLLTFVGATTENPSFEVNSA-LLSR- 156

Query: 163 KAATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
             A+V  +       L ++  +    A   +  D    A ++ + +        LV+++ 
Sbjct: 157 --ASVYVLHPLSATELGQLFERACRLALPGLGFDADARARLIGQADGDARRLLNLVEQVG 214

Query: 221 NLALSRG 227
             A +  
Sbjct: 215 TAAATER 221


>gi|251772664|gb|EES53228.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Leptospirillum
           ferrodiazotrophum]
          Length = 309

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL-DSILIDTRKPVLLED-------IDL 118
           +++ GP+ SGKS LA  W+ K+ +   S  ++ +   I I T KP L E        IDL
Sbjct: 10  LVIAGPTASGKSSLALEWAQKNGAEIVSADSRQIYREISIGTGKPSLTEQEAIPHHMIDL 69

Query: 119 LDFND 123
               +
Sbjct: 70  CSVQE 74


>gi|221107178|ref|XP_002169843.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 572

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
             ++L GP G GK+ LA   ++++     S     L ++ +   +  +
Sbjct: 288 PGILLAGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGESEKAV 335


>gi|218905594|ref|YP_002453428.1| ATPase, AAA family [Bacillus cereus AH820]
 gi|228917033|ref|ZP_04080593.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929444|ref|ZP_04092465.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229123940|ref|ZP_04253132.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201]
 gi|301055907|ref|YP_003794118.1| ATPase, AAA family [Bacillus anthracis CI]
 gi|218539593|gb|ACK91991.1| ATPase, AAA family [Bacillus cereus AH820]
 gi|228659242|gb|EEL14890.1| hypothetical protein bcere0016_42250 [Bacillus cereus 95/8201]
 gi|228830232|gb|EEM75848.1| hypothetical protein bthur0010_41290 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842640|gb|EEM87728.1| hypothetical protein bthur0012_42450 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300378076|gb|ADK06980.1| ATPase, AAA family [Bacillus cereus biovar anthracis str. CI]
          Length = 428

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|163787904|ref|ZP_02182350.1| cell division cycle protein 48-related protein [Flavobacteriales
           bacterium ALC-1]
 gi|159876224|gb|EDP70282.1| cell division cycle protein 48-related protein [Flavobacteriales
           bacterium ALC-1]
          Length = 434

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L GP G GK+ +A   + +  +   +
Sbjct: 193 ILLYGPPGCGKTHIAKATAGEIDANFIN 220


>gi|114614482|ref|XP_001167033.1| PREDICTED: peroxisome biogenesis factor 1 isoform 1 [Pan
           troglodytes]
          Length = 1226

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 820 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 867


>gi|57095978|ref|XP_532459.1| PREDICTED: similar to peroxisome biogenesis factor 1 isoform 1
           [Canis familiaris]
          Length = 1267

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA + + +S     S     L S  I   +  + +
Sbjct: 861 VLLYGPPGTGKTLLAGVIARESGMNFISVKGPELLSKYIGASEQAVRD 908


>gi|14289171|dbj|BAB59061.1| Pex1p-634del690 [Homo sapiens]
 gi|119597248|gb|EAW76842.1| peroxisome biogenesis factor 1, isoform CRA_c [Homo sapiens]
          Length = 1226

 Score = 39.0 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 820 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 867


>gi|328873251|gb|EGG21618.1| 26S protease regulatory subunit 6B [Dictyostelium fasciculatum]
          Length = 411

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   +  + ++    +        +    P L+ D+  L 
Sbjct: 190 PPRGVLLYGPPGTGKTMLAKAVAHHTSASFIRVVGSEFVQKYL-GEGPRLVRDVFRLA 246


>gi|327305323|ref|XP_003237353.1| proteasome-activating nucleotidase [Trichophyton rubrum CBS 118892]
 gi|326460351|gb|EGD85804.1| proteasome-activating nucleotidase [Trichophyton rubrum CBS 118892]
          Length = 439

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|324328302|gb|ADY23562.1| recombination factor protein RarA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|321468365|gb|EFX79350.1| hypothetical protein DAPPUDRAFT_52572 [Daphnia pulex]
          Length = 399

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 179 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGSRMVRE 226


>gi|309791299|ref|ZP_07685827.1| hypothetical protein OSCT_1778 [Oscillochloris trichoides DG6]
 gi|308226661|gb|EFO80361.1| hypothetical protein OSCT_1778 [Oscillochloris trichoides DG6]
          Length = 1045

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 65  RVVILVGPSGSGKS----CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--LLEDIDL 118
           R ++L+G  GSGKS     L +I + ++            +   +    P+  + E +  
Sbjct: 272 RRLVLLGEPGSGKSTVLRYLGHILAQRAGGAAIPLKGWPAEETPLPILIPLAQVAEQLTK 331

Query: 119 LDFNDTQLF 127
               D  L+
Sbjct: 332 TPDPDQALW 340


>gi|303235370|ref|ZP_07321987.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302493491|gb|EFL53280.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 325

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 32/122 (26%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------- 104
           ++ ++L G  G+GK+ L +  + +     FS I  S   +L                   
Sbjct: 178 AKSLLLYGQVGTGKTYLLSCMAKEIIENGFSVIYLSAMQLLKQLFSIRYQNFNEEPQPEV 237

Query: 105 ---IDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158
              I     ++++D+   +  +T    LF ++N   Q   + +++         + L DL
Sbjct: 238 EDIIYNCDVLMIDDLGTENSTETNISLLFDLLNYRIQNQKTTIIST-------NIDLDDL 290

Query: 159 CS 160
            S
Sbjct: 291 QS 292


>gi|302559295|ref|ZP_07311637.1| cell division protein [Streptomyces griseoflavus Tu4000]
 gi|302476913|gb|EFL40006.1| cell division protein [Streptomyces griseoflavus Tu4000]
          Length = 668

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 255

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 256 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 315

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P   D  L  V  +        +   L  
Sbjct: 316 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLSAVARRTPGMTGADLANVLNE 375

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R ++ L+    L + +D 
Sbjct: 376 AALLTARSDQKLIDNHMLDEAIDR 399


>gi|257438694|ref|ZP_05614449.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
 gi|257198829|gb|EEU97113.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165]
          Length = 688

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           V+LVGP G+GK+ LA   + ++    +S        + +      + +  D  
Sbjct: 225 VLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEMYVGVGASRVRDLFDKA 277


>gi|256075365|ref|XP_002573990.1| skd/vacuolar sorting [Schistosoma mansoni]
 gi|238659182|emb|CAZ30223.1| skd/vacuolar sorting, putative [Schistosoma mansoni]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P R ++L GP G+GKS LA   + ++ ++ F
Sbjct: 154 PWRGILLYGPPGTGKSYLAKAVATEANNSTF 184


>gi|228954684|ref|ZP_04116707.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229081664|ref|ZP_04214159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2]
 gi|229180675|ref|ZP_04308015.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W]
 gi|228602820|gb|EEK60301.1| hypothetical protein bcere0005_40190 [Bacillus cereus 172560W]
 gi|228701668|gb|EEL54159.1| hypothetical protein bcere0023_42940 [Bacillus cereus Rock4-2]
 gi|228805011|gb|EEM51607.1| hypothetical protein bthur0006_40530 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 476

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 90  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 149

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 150 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 198

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D +   + +   D++       + +  +   +        +  A   ++         
Sbjct: 199 TEDDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTT 258

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 259 DDQAA-----EITLEIAEECLQK 276


>gi|226304114|ref|YP_002764072.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4]
 gi|310946759|sp|C0ZPK5|FTSH_RHOE4 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|226183229|dbj|BAH31333.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4]
          Length = 854

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 19/81 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K+K +QL    P+         D          D L + A  QA+           R V+
Sbjct: 151 KSKAKQLTKDMPKTTFADVAGADEAVEELYEIKDFLQNPARYQALGAK------IPRGVL 204

Query: 69  LVGPSGSGKSCLANIWSDKSR 89
           L GP G+GK+ LA   + ++ 
Sbjct: 205 LYGPPGTGKTLLARAVAGEAG 225


>gi|198437706|ref|XP_002121586.1| PREDICTED: similar to vacuolar protein sorting 4 homolog b-like
           [Ciona intestinalis]
          Length = 438

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P R ++L GP G+GKS LA   + ++ ++ F
Sbjct: 160 PWRGILLYGPPGTGKSYLAKAVATEANNSTF 190


>gi|170086734|ref|XP_001874590.1| 26S proteasome regulatory complex, ATPase RPT4 [Laccaria bicolor
           S238N-H82]
 gi|164649790|gb|EDR14031.1| 26S proteasome regulatory complex, ATPase RPT4 [Laccaria bicolor
           S238N-H82]
          Length = 404

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 36/157 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +   ++     ++ ++    I     V+          
Sbjct: 177 PPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVIREMFGYARDH 236

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID +                  L  ++N          + L+ A   P + 
Sbjct: 237 EPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGRTKLIMATNRPDTL 296

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFA 187
              L  L   RL     +++ LP++    +++    A
Sbjct: 297 DPAL--LRPGRLD--RKIEVPLPNEQARLEILKIHAA 329


>gi|146105219|ref|XP_001470007.1| proteasome regulatory ATPase subunit [Leishmania infantum]
 gi|134074377|emb|CAM73128.1| proteasome regulatory ATPase subunit [Leishmania infantum JPCM5]
 gi|322503808|emb|CBZ38894.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 409

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 189 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRE 236


>gi|126733589|ref|ZP_01749336.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. CCS2]
 gi|126716455|gb|EBA13319.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. CCS2]
          Length = 633

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 46/204 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 183 ALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 242

Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH------QYDSSLLMTARTFPVSWGVC 154
           V +++ID +            ++ +    +N +       + +  +++ A T      V 
Sbjct: 243 VFIDEIDAVGRSRGVGIGGGNDERE--QTLNQLLVEMDGFEANEGVIIVAAT--NRRDVL 298

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
            P L   L+       V +  PD    EK++      R+I +   +   I+ R       
Sbjct: 299 DPAL---LRPGRFDRQVTVPNPDIKGREKILGVHA--RKIPLGPDVDLRIIARGSPGFSG 353

Query: 212 AEKLVDKMDNLALSRGMGITRSLA 235
           A  L + ++  AL     + R   
Sbjct: 354 A-DLANLVNEAALMAAR-VGRRFV 375


>gi|121705070|ref|XP_001270798.1| proteasome regulatory particle subunit Rpt1, putative [Aspergillus
           clavatus NRRL 1]
 gi|119398944|gb|EAW09372.1| proteasome regulatory particle subunit Rpt1, putative [Aspergillus
           clavatus NRRL 1]
          Length = 439

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|56757317|gb|AAW26830.1| SJCHGC00707 protein [Schistosoma japonicum]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P R ++L GP G+GKS LA   + ++ ++ F
Sbjct: 154 PWRGILLYGPPGTGKSYLAKAVATEANNSTF 184


>gi|41472112|gb|AAS07429.1| unknown [Homo sapiens]
          Length = 409

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 184 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 243

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 244 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 303

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 304 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 344

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 345 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 379


>gi|21221831|ref|NP_627610.1| cell division protein ftsH-like protein [Streptomyces coelicolor
           A3(2)]
 gi|256786989|ref|ZP_05525420.1| cell division protein ftsH-like protein [Streptomyces lividans
           TK24]
 gi|289770882|ref|ZP_06530260.1| cell division protein FtsH [Streptomyces lividans TK24]
 gi|4808343|emb|CAB42757.1| cell division protein ftsH homolog [Streptomyces coelicolor A3(2)]
 gi|289701081|gb|EFD68510.1| cell division protein FtsH [Streptomyces lividans TK24]
          Length = 668

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 255

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 256 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 315

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P   D  L  V  +        +   L  
Sbjct: 316 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLSAVARRTPGMTGADLANVLNE 375

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R ++ L+    L + +D 
Sbjct: 376 AALLTARSDQKLIDNHMLDEAIDR 399


>gi|331696260|ref|YP_004332499.1| GAF modulated sigma54 specific Fis family transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950949|gb|AEA24646.1| GAF modulated sigma54 specific transcriptional regulator, Fis
           family [Pseudonocardia dioxanivorans CB1190]
          Length = 587

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 59/159 (37%), Gaps = 24/159 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK---SRSTRFSNIAKSLDSI-------LIDTRKPVL 112
             R +++VG  GSG++ L    + +     +   +    +            +D    ++
Sbjct: 347 AGRALLVVGEPGSGRTRLLTDLAGRRSGPGADVVAAADVTARPAGALARIRSLDGGTLLV 406

Query: 113 LEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV--- 168
           L D+D L      +   ++  +      +  TA T P   G     L +R +++  V   
Sbjct: 407 LRDVDALTPAALGILDEVVADLLAAGRPVAATAATPPRHDG-----LLARFRSSVTVPPL 461

Query: 169 ---KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
               + LP  + +  ++ ++   R++ +  +    + + 
Sbjct: 462 RARVVDLP--ELVATILGELAPHREVGVSAEAMRTLARH 498


>gi|302671007|ref|YP_003830967.1| holliday junction DNA helicase RuvB [Butyrivibrio proteoclasticus
           B316]
 gi|302395480|gb|ADL34385.1| holliday junction DNA helicase RuvB [Butyrivibrio proteoclasticus
           B316]
          Length = 343

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 31/200 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G GK+ LA I + +           +++           L++ D+L  ++   
Sbjct: 63  LLFYGPPGLGKTTLAGIIAAEMGVNIKITSGPAIEKPGDMAAILNNLQEGDVLFVDEI-- 120

Query: 127 FHIINS--------IHQYDSSLLMTARTFPVS-WGVCLPD----------------LCSR 161
            H +N           +  +  +M  +        + LP                 L  R
Sbjct: 121 -HRLNRQVEEVLYPAMEDYAIDIMIGKGPTARSIRLDLPHFTLIGATTRAGMLSAPLRDR 179

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220
                + ++   D D L  +I++      + +D+K A  + +R   +   A +++ ++ D
Sbjct: 180 F--GMIHRMEYYDIDELSTIIMQSAGVLGVEVDEKGAVEMARRSRGTPRLANRILKRVRD 237

Query: 221 NLALSRGMGITRSLAAEVLK 240
              +     IT  +A   L 
Sbjct: 238 FAQVKYDGRITEDIAITALD 257


>gi|302768635|ref|XP_002967737.1| hypothetical protein SELMODRAFT_88110 [Selaginella moellendorffii]
 gi|300164475|gb|EFJ31084.1| hypothetical protein SELMODRAFT_88110 [Selaginella moellendorffii]
          Length = 641

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ +   +
Sbjct: 371 PCRGLLLFGPPGTGKTMLAKAVATEAGANFIN 402


>gi|297852706|ref|XP_002894234.1| hypothetical protein ARALYDRAFT_891942 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297340076|gb|EFH70493.1| hypothetical protein ARALYDRAFT_891942 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1002

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ L    + ++ +   S    +L S
Sbjct: 747 PCKGILLFGPPGTGKTLLTKALATEAGANFISITGSTLTS 786


>gi|291519780|emb|CBK75001.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Butyrivibrio fibrisolvens 16/4]
          Length = 439

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 23/137 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---D 123
           +I  GP G+GK+ LA + +  + +   S  A +     ++     ++E            
Sbjct: 55  IIFYGPPGTGKTTLAQVIAHTTAAEFTSINATTSGKKDMEA----VVEAAKQTLGAYGKK 110

Query: 124 TQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           T LF    H  N           +  + +L+ A T    + V    L SR   + + ++ 
Sbjct: 111 TILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SIIFELK 166

Query: 172 LPDDDFLEKVIVKMFAD 188
             +   ++ +I++   D
Sbjct: 167 PLEAADIKTLIMRAITD 183


>gi|303321742|ref|XP_003070865.1| 26S protease regulatory subunit, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240110562|gb|EER28720.1| 26S protease regulatory subunit, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320040354|gb|EFW22287.1| 26S protease regulatory subunit 7 [Coccidioides posadasii str.
           Silveira]
          Length = 439

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|224475654|ref|YP_002633260.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420261|emb|CAL27075.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 700

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 65/197 (32%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++   + +  +++ A   P      L
Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       +++  PD    E ++      R   +D+ +    I QR       
Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILYVHA--RNKPLDETVDLKAIAQRTP-GFSG 371

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  +L    
Sbjct: 372 A-DLENLLNEASLIAVR 387


>gi|218460214|ref|ZP_03500305.1| recombination factor protein RarA [Rhizobium etli Kim 5]
          Length = 255

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 29/157 (18%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111
           R+I+   S     +I  GP G+GK+ +A + S ++     + S I   +  +        
Sbjct: 47  RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAA- 102

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
               +  +D   T LF    H  N           +  + +L+  T              
Sbjct: 103 ---RMRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194
           L SR   A V+     D++ LE+++ +  A  Q  + 
Sbjct: 157 LLSR---ARVLTFKSHDEESLEELLKRAEAIEQKPLP 190


>gi|189440275|ref|YP_001955356.1| DNA replication protein [Bifidobacterium longum DJO10A]
 gi|189428710|gb|ACD98858.1| DNA replication protein [Bifidobacterium longum DJO10A]
          Length = 254

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           ++L GP G+GKS LA      +          +   +L                  I   
Sbjct: 110 LVLYGPVGTGKSHLAIAIGRLACERGVPVRFFTATGLLMRLRRAQQENRLDRELASIGKA 169

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + +++++   L  ++     LF II+  ++   S++ T       WG  L D
Sbjct: 170 RLLIIDEFGYLPIDEEGSRLLFQIISDSYET-RSIIYTTNIEFSGWGRVLGD 220


>gi|146415458|ref|XP_001483699.1| cell division control protein 48 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 825

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 44/163 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 246 PPKGILMYGPPGTGKTVMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 305

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151
               + +++ID +                 QL  +++ +    +++++ A   P S    
Sbjct: 306 APSIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNTVVIAATNRPNSIDPA 365

Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181
                       + +PD   RL+        + L DD  LE +
Sbjct: 366 LRRFGRFDREVDIGVPDAAGRLEILRIHTKNMKLADDVDLEAI 408


>gi|113866790|ref|YP_725279.1| recombination factor protein RarA [Ralstonia eutropha H16]
 gi|113525566|emb|CAJ91911.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ralstonia eutropha H16]
          Length = 455

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 20/142 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +IL GP G GK+ LA + +    +   +              + ++        R  V +
Sbjct: 54  MILWGPPGVGKTTLARLMASAFDAEFIALSAVLSGVKDIREAVERAEQFRAHGRRTLVFV 113

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +      + A T   S+ V    L SR   A V  +   
Sbjct: 114 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKSL 166

Query: 174 DDDFLEKVIVKMFADRQIFIDK 195
           DD  L ++ ++   +       
Sbjct: 167 DDAELTQLALRASEELGAQAGD 188


>gi|83816138|ref|YP_445932.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
 gi|294507843|ref|YP_003571901.1| cell division protein [Salinibacter ruber M8]
 gi|310943098|sp|D5HA94|FTSH2_SALRM RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|83757532|gb|ABC45645.1| cell division protein FtsH [Salinibacter ruber DSM 13855]
 gi|294344171|emb|CBH24949.1| cell division protein [Salinibacter ruber M8]
          Length = 683

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G+GK+ LA   + ++ +  FS        + +      + +
Sbjct: 224 VLLVGPPGTGKTLLARAVAGEANAPFFSVSGSDFMEMFVGVGASRVRD 271


>gi|42783528|ref|NP_980775.1| recombination factor protein RarA [Bacillus cereus ATCC 10987]
 gi|42739457|gb|AAS43383.1| ATPase, AAA family [Bacillus cereus ATCC 10987]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|6321465|ref|NP_011542.1| Msp1p [Saccharomyces cerevisiae S288c]
 gi|462627|sp|P28737|MSP1_YEAST RecName: Full=Protein MSP1; AltName: Full=Tat-binding homolog 4
 gi|404217|emb|CAA48191.1| MSP1 protein [Saccharomyces cerevisiae]
 gi|531756|emb|CAA56956.1| YTA4 (=MSP1) [Saccharomyces cerevisiae]
 gi|1323004|emb|CAA97015.1| MSP1 [Saccharomyces cerevisiae]
 gi|45269435|gb|AAS56098.1| YGR028W [Saccharomyces cerevisiae]
 gi|151943311|gb|EDN61624.1| 40 kDa membrane-spanning ATPase [Saccharomyces cerevisiae YJM789]
 gi|190406946|gb|EDV10213.1| 40 kDa membrane-spanning ATPase [Saccharomyces cerevisiae RM11-1a]
 gi|207345217|gb|EDZ72108.1| YGR028Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273852|gb|EEU08773.1| Msp1p [Saccharomyces cerevisiae JAY291]
 gi|259146531|emb|CAY79788.1| Msp1p [Saccharomyces cerevisiae EC1118]
 gi|285812224|tpg|DAA08124.1| TPA: Msp1p [Saccharomyces cerevisiae S288c]
 gi|323309131|gb|EGA62359.1| Msp1p [Saccharomyces cerevisiae FostersO]
 gi|323354997|gb|EGA86828.1| Msp1p [Saccharomyces cerevisiae VL3]
          Length = 362

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   S
Sbjct: 126 PSGVL-LYGPPGCGKTMLAKALAKESGANFIS 156


>gi|332520127|ref|ZP_08396591.1| NadR-like transcriptional regulator [Lacinutrix algicola 5H-3-7-4]
 gi|332044686|gb|EGI80880.1| NadR-like transcriptional regulator [Lacinutrix algicola 5H-3-7-4]
          Length = 189

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT 124
            + L GP  +GK+ LA   +   ++      A+       +    +  LEDI  +     
Sbjct: 14  KIALFGPESTGKTTLAKALAAHYKTNWVPEFARDYLQKKWNEEAKICELEDILPIGIGQM 73

Query: 125 QLFHIINSIHQYDSSLLM 142
           +L    N + +  + LL 
Sbjct: 74  EL---ENKLTKEANKLLF 88


>gi|317147104|ref|XP_001821885.2| midasin [Aspergillus oryzae RIB40]
          Length = 4888

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 55   LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            ++    SWPS   ILVGPSG GK+ L    +  + ++    +A S D+  +D       E
Sbjct: 2006 MLCIEQSWPS---ILVGPSGCGKTTLIRKLAAVNGASLIE-LALSADTDTMDLIGGF--E 2059

Query: 115  DID 117
             ID
Sbjct: 2060 QID 2062


>gi|312196285|ref|YP_004016346.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
 gi|311227621|gb|ADP80476.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c]
          Length = 654

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V++VGP G+GK+ LA   + ++     S    S   + +                   
Sbjct: 222 RGVLMVGPPGTGKTLLARAVAGEAEVPFLSVTGSSFVEMFVGVGASRVRDLFAEARKRAP 281

Query: 111 --VLLEDIDLLDF-----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
             + +++ID +             ++      QL   ++        +++ A   P +  
Sbjct: 282 SIIFIDEIDSIGGRRGGSVIGGSNDEREQTLNQLLAEMDGFDGSTGVVVLAATNRPETLD 341

Query: 153 VCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY-IVQRMERS 208
             L      L+A      V + LP       ++      +Q+  D     + +V R    
Sbjct: 342 AAL------LRAGRFDRQVTVPLPTQAERAAILAVHARGKQLAPD---VDFDVVARATPG 392

Query: 209 LVFAEKLVDKMDNLALSRGMG 229
              A  L + ++  A+     
Sbjct: 393 FSGA-DLANLLNEAAIHAVRE 412


>gi|317047548|ref|YP_004115196.1| AAA ATPase central domain-containing protein [Pantoea sp. At-9b]
 gi|316949165|gb|ADU68640.1| AAA ATPase central domain protein [Pantoea sp. At-9b]
          Length = 449

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-----------VLL 113
           +IL GP G+GK+ LA I +   K+   R S +   +  I     +            + +
Sbjct: 54  MILWGPPGTGKTTLAEIIAHYGKADVERISAVTSGVKEIREAIERARQNRQVGRRTILFV 113

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169
           +++   + +    F  HI     +  +   +  T              L SR   A V  
Sbjct: 114 DEVHRFNKSQQDAFLPHI-----EDGTITFIGATTENPSFELNSA---LLSR---ARVYL 162

Query: 170 ISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSL--VFAEKLVDKMDNLAL- 224
           +       +E+V+ +   D  R       L     +RM   L    A + ++ ++ +A  
Sbjct: 163 LKSLTTADIEQVLQQAMQDSTRGYGNSDILLPDNTRRMIAELVNGDARRALNTLEMMADM 222

Query: 225 -----SRGMGITRSLAAEV 238
                +    +T  L  EV
Sbjct: 223 AETNGAGQRELTPQLLNEV 241


>gi|296805197|ref|XP_002843423.1| 26S protease regulatory subunit S10B [Arthroderma otae CBS 113480]
 gi|238844725|gb|EEQ34387.1| 26S protease regulatory subunit S10B [Arthroderma otae CBS 113480]
          Length = 393

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 229

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 230 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 289

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +V+    +   + ++ ++           
Sbjct: 290 DPAL------LRAGRLDRKIEIPLPNEVGRLEVLKIHAS--GVSMEGEI----------D 331

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 332 FETIVKMSDGLNGADLRN 349


>gi|295664474|ref|XP_002792789.1| cell division cycle protein [Paracoccidioides brasiliensis Pb01]
 gi|226278903|gb|EEH34469.1| cell division cycle protein [Paracoccidioides brasiliensis Pb01]
          Length = 820

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 253 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 312

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 313 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNS---V 369

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 370 DPALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLAEDV 410


>gi|163753418|ref|ZP_02160542.1| NadR-like protein [Kordia algicida OT-1]
 gi|161327150|gb|EDP98475.1| NadR-like protein [Kordia algicida OT-1]
          Length = 185

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            +++ GP  +GK+ LA   +    +T     ++ L        + +  ED+  +     +
Sbjct: 14  KIVIFGPESTGKTTLAKQLAAHYNATFVPEYSRILAEEKQQKGEKLTSEDVIPIAKGQLR 73

Query: 126 L 126
           L
Sbjct: 74  L 74


>gi|149183225|ref|ZP_01861670.1| FtsH [Bacillus sp. SG-1]
 gi|148849058|gb|EDL63263.1| FtsH [Bacillus sp. SG-1]
          Length = 608

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 45/198 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 181 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 240

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 241 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIVAATNRPDILDPAL 300

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD    E V+      R   +D+ +    I  R       
Sbjct: 301 ------LRPGRFDRQITVDRPDVKGREAVLKVHA--RNKPLDESVDLQAIAARTP-GFSG 351

Query: 212 AEKLVDKMDNLALSRGMG 229
           A  L + ++  AL     
Sbjct: 352 A-DLENLLNEAALVAARE 368


>gi|83765337|dbj|BAE55480.1| unnamed protein product [Aspergillus oryzae]
          Length = 896

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 220 KVMLLCGPPGLGKTTLAHVCAKQAG 244


>gi|13541365|ref|NP_111053.1| replication factor C large subunit [Thermoplasma volcanium GSS1]
 gi|42559520|sp|Q97BC2|RFCL_THEVO RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|14324749|dbj|BAB59676.1| replication factor C subunit [Thermoplasma volcanium GSS1]
          Length = 420

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 31/134 (23%)

Query: 41  DDLLVHSAIEQAVR-LIDSWPSWP--SRVVILVGPSGSGKSCLANIWSD----------- 86
           +DL+V   I Q ++  ID+W       R +IL G  GSGK+  A   +            
Sbjct: 13  EDLIVSEEIRQKIQSWIDAWEEGSPKKRALILYGVQGSGKTSAAYAIAGTFGLPVVEMNA 72

Query: 87  ---------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--------DFNDTQLFHI 129
                    K+ +   S  A    S      K +L+++ D +          +   ++ +
Sbjct: 73  SEQRNRESMKATALMASLYADLGASDFRKPSKVILIDEADNIFESNNPKRGGDTGGVYEL 132

Query: 130 INSIHQYDSSLLMT 143
              + +  + +++T
Sbjct: 133 SKIVKETRNPVIIT 146


>gi|19112272|ref|NP_595480.1| 19S proteasome regulatory subunit Rpt2 [Schizosaccharomyces pombe
           972h-]
 gi|547935|sp|P36612|PRS4_SCHPO RecName: Full=26S protease regulatory subunit 4 homolog; AltName:
           Full=Protein mts2
 gi|442508|emb|CAA82554.1| mts2 gene [Schizosaccharomyces pombe]
 gi|6066725|emb|CAB58406.1| 19S proteasome regulatory subunit Rpt2 [Schizosaccharomyces pombe]
 gi|738776|prf||2001429A ubiquitin-dependent protease
          Length = 448

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 224 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLV---------- 273

Query: 123 DTQLFHIINSIHQYDSSLLM 142
             QLF   N+  ++  S++ 
Sbjct: 274 -RQLF---NAAEEHSPSIVF 289


>gi|89096804|ref|ZP_01169696.1| ABC transporter ATP-binding protein [Bacillus sp. NRRL B-14911]
 gi|89088819|gb|EAR67928.1| ABC transporter ATP-binding protein [Bacillus sp. NRRL B-14911]
          Length = 227

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 18/84 (21%)

Query: 45  VHSAIEQAVRLID--SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           V+ + + AV+ +D  S+       V ++GPSGSGKS L ++                L  
Sbjct: 12  VYGSGDTAVKALDDVSFSVNKGEFVAIIGPSGSGKSTLLHM----------------LGG 55

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQL 126
           +   T   VL+++ D+   N+TQL
Sbjct: 56  VDRPTGGRVLVDNTDIYKLNETQL 79


>gi|313498638|gb|ADR60004.1| Carbohydrate kinase [Pseudomonas putida BIRD-1]
          Length = 179

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P   ++++G +G GKSC+    + +S        A      +      + L+D D   +
Sbjct: 4   PLSAIVVMGVAGCGKSCIGAAIAARSGGRLIEGDAFHPAENIRKMSAGIPLDDSDRAGW 62


>gi|302756521|ref|XP_002961684.1| hypothetical protein SELMODRAFT_230050 [Selaginella moellendorffii]
 gi|300170343|gb|EFJ36944.1| hypothetical protein SELMODRAFT_230050 [Selaginella moellendorffii]
          Length = 1416

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R+++L+GP GSGKS L    + K
Sbjct: 194 PGRMMLLLGPPGSGKSTLLRALAGK 218


>gi|296114100|ref|YP_003628038.1| recombination protein MgsA [Moraxella catarrhalis RH4]
 gi|295921794|gb|ADG62145.1| recombination protein MgsA [Moraxella catarrhalis RH4]
          Length = 412

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113
             +IL G +G GK+ LA + +D         S ++            D  L      V +
Sbjct: 39  PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98

Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++I   +      L        +     L+ A T   S+ V    L SR     V K+  
Sbjct: 99  DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150

Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225
             DD +  +IV+      +   K +    +   ++ S     + ++ ++ +A +
Sbjct: 151 LSDDEIYALIVRAIRQDTLLKTKDIQINDLAALIDLSQGDGRRALNLLELVAAA 204


>gi|261201460|ref|XP_002627130.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
           SLH14081]
 gi|239592189|gb|EEQ74770.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
           SLH14081]
 gi|327348334|gb|EGE77191.1| proteasome regulatory particle subunit Rpt4 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 392

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 169 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 228

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 229 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 288

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +++    +   + I+ ++           
Sbjct: 289 DPAL------LRAGRLDRKIEIPLPNEVGRLEILKIHAS--GVAIEGEI----------D 330

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 331 FESIVKMSDGLNGADLRN 348


>gi|296805902|ref|XP_002843775.1| 26S protease regulatory subunit 7 [Arthroderma otae CBS 113480]
 gi|238845077|gb|EEQ34739.1| 26S protease regulatory subunit 7 [Arthroderma otae CBS 113480]
          Length = 439

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|258575429|ref|XP_002541896.1| 26S protease regulatory subunit 7 [Uncinocarpus reesii 1704]
 gi|237902162|gb|EEP76563.1| 26S protease regulatory subunit 7 [Uncinocarpus reesii 1704]
          Length = 439

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 214 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 265


>gi|228960671|ref|ZP_04122316.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228799035|gb|EEM46007.1| hypothetical protein bthur0005_41330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 476

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 90  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 149

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 150 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 198

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            ++ +   + +   D++       + +  +   +        +  A   ++         
Sbjct: 199 TEEDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTT 258

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 259 DDQAA-----EITLEIAEECLQK 276


>gi|260784200|ref|XP_002587156.1| hypothetical protein BRAFLDRAFT_115817 [Branchiostoma floridae]
 gi|229272295|gb|EEN43167.1| hypothetical protein BRAFLDRAFT_115817 [Branchiostoma floridae]
          Length = 467

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 13  PDKQKNDQPKNKEEQLFFSFPRC-----LGISRDDLLVHSAIEQAVRLIDSW---PSW-- 62
           PD++K   P   ++ L  +  R        +  DD+   +   +A RL++     P W  
Sbjct: 154 PDEEKKFDPAGYDKDLVEALERDIVQRNPNVHWDDI---AGNPEAKRLLEEAVVLPMWMP 210

Query: 63  --------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
                   P + V++VGP G+GK+ LA   + +  +T F+  + +L S      + ++
Sbjct: 211 DFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVTSSTLSSKYRGESEKLV 268


>gi|189440660|ref|YP_001955741.1| AAA-superfamily ATPase [Bifidobacterium longum DJO10A]
 gi|239620862|ref|ZP_04663893.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322688562|ref|YP_004208296.1| DNA replication protein [Bifidobacterium longum subsp. infantis
           157F]
 gi|322688578|ref|YP_004208312.1| DNA replication protein [Bifidobacterium longum subsp. infantis
           157F]
 gi|322688866|ref|YP_004208600.1| DNA replication protein [Bifidobacterium longum subsp. infantis
           157F]
 gi|322689364|ref|YP_004209098.1| DNA replication protein [Bifidobacterium longum subsp. infantis
           157F]
 gi|322689969|ref|YP_004209703.1| DNA replication protein [Bifidobacterium longum subsp. infantis
           157F]
 gi|322690165|ref|YP_004209899.1| hypothetical protein BLIF_1987 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691145|ref|YP_004220715.1| hypothetical protein BLLJ_0956 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|322691241|ref|YP_004220811.1| hypothetical protein BLLJ_1052 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|322692053|ref|YP_004221623.1| hypothetical protein BLLJ_1867 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189429095|gb|ACD99243.1| AAA-superfamily ATPase [Bifidobacterium longum DJO10A]
 gi|239516232|gb|EEQ56099.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|320456001|dbj|BAJ66623.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456097|dbj|BAJ66719.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456909|dbj|BAJ67531.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459898|dbj|BAJ70518.1| putative DNA replication protein [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320459914|dbj|BAJ70534.1| putative DNA replication protein [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460202|dbj|BAJ70822.1| putative DNA replication protein [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460700|dbj|BAJ71320.1| putative DNA replication protein [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320461305|dbj|BAJ71925.1| putative DNA replication protein [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320461501|dbj|BAJ72121.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 233

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           ++L GP G+GKS LA      +          +   +L                  I   
Sbjct: 89  LVLYGPVGTGKSHLAIAIGRLACERGVPVRFFTATGLLMRLRRAQQENRLDRELASIGKA 148

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + +++++   L  ++     LF II+  ++   S++ T       WG  L D
Sbjct: 149 RLLIIDEFGYLPIDEEGSRLLFQIISDSYET-RSIIYTTNIEFSGWGRVLGD 199


>gi|239827858|ref|YP_002950482.1| Holliday junction DNA helicase RuvB [Geobacillus sp. WCH70]
 gi|259495669|sp|C5D5E8|RUVB_GEOSW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|239808151|gb|ACS25216.1| Holliday junction DNA helicase RuvB [Geobacillus sp. WCH70]
          Length = 333

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLAAIIANEMGVHLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHR 115

Query: 127 FH 128
            H
Sbjct: 116 LH 117


>gi|121595667|ref|YP_987563.1| recombination factor protein RarA [Acidovorax sp. JS42]
 gi|120607747|gb|ABM43487.1| Recombination protein MgsA [Acidovorax sp. JS42]
          Length = 442

 Score = 38.6 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 23/176 (13%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112
           IL GP G GK+ +A + ++   +   S                +A+S    L+  R  V 
Sbjct: 50  ILWGPPGVGKTTIARLMAEAFDAQFISISAVLGGVKDIRDAVQLAESARDGLMQQRTIVF 109

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR   A V  +  
Sbjct: 110 VDEVHRFNKSQQDAFLPH---VESGLFTFVGATTENPSFEVNSA-LLSR---AAVYVLQP 162

Query: 173 PDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
              D L++++ K  A + +  I+      ++   +         ++ ++  A   G
Sbjct: 163 LGSDDLKQIVAKAQALQALPAIENAALERLIAYADGDARRLLNTLETLEVTASQAG 218


>gi|328876170|gb|EGG24533.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 918

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 25/101 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P R ++L GP G GK+ LAN  + + +    S  A  + S +    +             
Sbjct: 289 PPRGILLHGPPGCGKTLLANCIAGELKVPLISISAPEITSGMSGESEAKIRQLFASAVEQ 348

Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144
               V +++ID +           N+  + +  +   L+T 
Sbjct: 349 SPCIVFIDEIDAIAPKRE------NASKEMERRIVAQLLTC 383


>gi|323348569|gb|EGA82813.1| Msp1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 362

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   S
Sbjct: 126 PSGVL-LYGPPGCGKTMLAKALAKESGANFIS 156


>gi|301051803|ref|YP_003790014.1| cell division protein [Bacillus anthracis CI]
 gi|300373972|gb|ADK02876.1| cell division protein [Bacillus cereus biovar anthracis str. CI]
          Length = 633

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 369 A-DLENLLNEAALVAAR 384


>gi|297537338|ref|YP_003673107.1| Sporulation domain-containing protein [Methylotenera sp. 301]
 gi|297256685|gb|ADI28530.1| Sporulation domain protein [Methylotenera sp. 301]
          Length = 519

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 66/229 (28%), Gaps = 49/229 (21%)

Query: 42  DLLVHSAIEQAV--RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           D         AV   L+ +  +    ++ +VG  GSGK+ L  +          S    +
Sbjct: 20  DFFFSGGNRGAVLDALVYAITNG-EGIIKVVGEVGSGKTMLCRMLQTILPEKVESVYLAN 78

Query: 100 LDSILIDTRKPVLLE-------DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
                 D    +  E       + D L        H++N  H     +++         G
Sbjct: 79  PSVAPEDVLHAIAFELQLKVPKNADRLKVMQLLQAHLLNR-HAEGRQVVIFVEEA---QG 134

Query: 153 VCLPDLCS-RLKAATVVKISLPDDDFLEKVI---------VKMFADRQI--------FID 194
           + L  L   RL +     +    D  L+ V+         +     RQ+         ++
Sbjct: 135 MPLATLEEIRLLS----NLETKQDKLLQIVLFGQPELDVNLSEAHIRQLRERITHSFHLE 190

Query: 195 K----KLAAYIVQRM-------ERSLVFAEKLVDKMDNLALSRGMGITR 232
                 +  Y++ R+             A   + K+   A      +  
Sbjct: 191 PLGTKDIGEYLILRLRAAGYHGPHLFSAA--AIKKLSAAAEGLARRVNI 237


>gi|293602017|ref|ZP_06684472.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292819547|gb|EFF78573.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 751

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 22/123 (17%)

Query: 40  RDDL---LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96
           RDDL   ++  +  +AV  +D         V+L+G   +GK+ +A++ +  +     S++
Sbjct: 173 RDDLAKVVITESYRKAVNALDE-----HGFVLLIGEPAAGKTTIASMLAMAAADKWKSSV 227

Query: 97  AKSLDSI-------LIDTRKPVLLEDIDLLDFNDTQLFHIINSI-------HQYDSSLLM 142
            K  D         + +  +   ++D   +   ++ L H  N          +  + ++M
Sbjct: 228 LKLADPAKVVDRWNVDEPSQFFWIDDAFGVTQYESPLVHGWNHALTQVKTMLRRGAKIVM 287

Query: 143 TAR 145
           T+R
Sbjct: 288 TSR 290


>gi|295401966|ref|ZP_06811928.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109217|ref|YP_003987533.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1]
 gi|294975968|gb|EFG51584.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214318|gb|ADP72922.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1]
          Length = 634

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFETAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSGNEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + +  PD    E V+     ++ +     L   I  R       A
Sbjct: 318 ------LRPGRFDRQITVDRPDVKGREAVLRVHARNKPLDESVDLKT-IAMRTP-GFSGA 369

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 370 -DLENLLNEAALVAARR 385


>gi|229027912|ref|ZP_04184067.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1271]
 gi|228733426|gb|EEL84253.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH1271]
          Length = 612

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 347

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 348 A-DLENLLNEAALVAAR 363


>gi|229067830|ref|ZP_04201148.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus F65185]
 gi|228715314|gb|EEL67172.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus F65185]
          Length = 612

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 347

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 348 A-DLENLLNEAALVAAR 363


>gi|229159239|ref|ZP_04287264.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           R309803]
 gi|228624254|gb|EEK81055.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           R309803]
          Length = 612

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 347

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 348 A-DLENLLNEAALVAAR 363


>gi|228912805|ref|ZP_04076453.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925319|ref|ZP_04088416.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931568|ref|ZP_04094475.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228943872|ref|ZP_04106258.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228983321|ref|ZP_04143535.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089197|ref|ZP_04220479.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-42]
 gi|229119728|ref|ZP_04248990.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           95/8201]
 gi|229136912|ref|ZP_04265540.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|229153844|ref|ZP_04281975.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           4342]
 gi|229182460|ref|ZP_04309712.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus BGSC
           6E1]
 gi|228601040|gb|EEK58608.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus BGSC
           6E1]
 gi|228629648|gb|EEK86344.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           4342]
 gi|228646577|gb|EEL02783.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST26]
 gi|228663753|gb|EEL19331.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           95/8201]
 gi|228694160|gb|EEL47841.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock3-42]
 gi|228776435|gb|EEM24787.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228815829|gb|EEM62064.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228828120|gb|EEM73847.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834366|gb|EEM79906.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846865|gb|EEM91869.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 612

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 347

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 348 A-DLENLLNEAALVAAR 363


>gi|229176666|ref|ZP_04304071.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           172560W]
 gi|229188351|ref|ZP_04315400.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           10876]
 gi|228595150|gb|EEK52920.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus ATCC
           10876]
 gi|228606833|gb|EEK64249.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           172560W]
          Length = 612

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 347

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 348 A-DLENLLNEAALVAAR 363


>gi|229194456|ref|ZP_04321260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1293]
 gi|228589046|gb|EEK47060.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus m1293]
          Length = 612

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 347

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 348 A-DLENLLNEAALVAAR 363


>gi|227529658|ref|ZP_03959707.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350448|gb|EEJ40739.1| crossover junction endodeoxyribonuclease [Lactobacillus vaginalis
           ATCC 49540]
          Length = 432

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 22/138 (15%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117
           +IL GP G+GK+ +A+  +   K    + +    +   + +   +        +LL++I 
Sbjct: 41  LILYGPPGTGKTSIASAIAGSTKYAFRKLNAATDTKKDLQVVAEEAKMSGTVILLLDEIH 100

Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
            LD +       H+ N        +L+ A T      +  P + SR     +  +     
Sbjct: 101 RLDKSKQDFLLPHLEN-----GRIILIGATTENPYISIN-PAIRSR---TQIFPVHPLSI 151

Query: 176 DFLEKVIVKMFAD--RQI 191
           + ++  + +   D  R +
Sbjct: 152 EDMKVAVNRALTDSERGL 169


>gi|238496553|ref|XP_002379512.1| midasin, putative [Aspergillus flavus NRRL3357]
 gi|220694392|gb|EED50736.1| midasin, putative [Aspergillus flavus NRRL3357]
          Length = 4913

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 55   LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            ++    SWPS   ILVGPSG GK+ L    +  + ++    +A S D+  +D       E
Sbjct: 2031 MLCIEQSWPS---ILVGPSGCGKTTLIRKLAAVNGASLIE-LALSADTDTMDLIGGF--E 2084

Query: 115  DID 117
             ID
Sbjct: 2085 QID 2087


>gi|197285879|ref|YP_002151751.1| toxin transporter [Proteus mirabilis HI4320]
 gi|194683366|emb|CAR44073.1| putative toxin transporter [Proteus mirabilis HI4320]
          Length = 690

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128
           +VG SGSGKS LA I +              LD I +    P +L         +  LFH
Sbjct: 484 IVGTSGSGKSTLARIIA---GLYIPQLGQVKLDDIPVCEIPPAVLRQQIGFVLQENFLFH 540

Query: 129 I 129
           +
Sbjct: 541 L 541


>gi|170688931|ref|ZP_02880133.1| cell division protein FtsH [Bacillus anthracis str. A0465]
 gi|254682308|ref|ZP_05146169.1| cell division protein FtsH [Bacillus anthracis str. CNEVA-9066]
 gi|170667155|gb|EDT17916.1| cell division protein FtsH [Bacillus anthracis str. A0465]
          Length = 633

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 369 A-DLENLLNEAALVAAR 384


>gi|206972571|ref|ZP_03233514.1| cell division protein FtsH [Bacillus cereus AH1134]
 gi|229077355|ref|ZP_04210025.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-2]
 gi|206732473|gb|EDZ49652.1| cell division protein FtsH [Bacillus cereus AH1134]
 gi|228705952|gb|EEL58268.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock4-2]
          Length = 633

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 369 A-DLENLLNEAALVAAR 384


>gi|170028516|ref|XP_001842141.1| fidgetin [Culex quinquefasciatus]
 gi|167876263|gb|EDS39646.1| fidgetin [Culex quinquefasciatus]
          Length = 607

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ +    + +S +T FS  A SL S  I   + ++
Sbjct: 364 PPRGILLFGPPGTGKTLIGKCIASQSNATFFSISASSLTSKWIGEGEKMV 413


>gi|161504374|ref|YP_001571486.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|189044147|sp|A9MM22|CLPX_SALAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|160865721|gb|ABX22344.1| hypothetical protein SARI_02485 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  + I  DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRIHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|126728481|ref|ZP_01744297.1| type I secretion system ATPase [Sagittula stellata E-37]
 gi|126711446|gb|EBA10496.1| type I secretion system ATPase [Sagittula stellata E-37]
          Length = 577

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 44  LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
           +V    +QA   + S+   P   V ++GPSGSGKS LA      +   R +     LD  
Sbjct: 340 VVAPGEQQAALRLVSFNVAPGEAVGVIGPSGSGKSTLAR---ALTGIWRPAGGKIRLDGA 396

Query: 104 LIDTRKPVLL 113
            +D   P +L
Sbjct: 397 SLDQYGPDVL 406


>gi|110433419|gb|ABG74391.1| DnaA [Israeli tick typhus rickettsia]
 gi|110433421|gb|ABG74392.1| DnaA [Rickettsia conorii]
 gi|110433423|gb|ABG74393.1| DnaA [Rickettsia conorii]
 gi|110433435|gb|ABG74399.1| DnaA [Rickettsia sp. A-167]
 gi|110433439|gb|ABG74401.1| DnaA [Rickettsia rickettsii]
 gi|110433443|gb|ABG74403.1| DnaA [Rickettsia africae]
 gi|110433449|gb|ABG74406.1| DnaA [Israeli tick typhus rickettsia]
 gi|110433451|gb|ABG74407.1| DnaA [Israeli tick typhus rickettsia]
 gi|110433453|gb|ABG74408.1| DnaA [Israeli tick typhus rickettsia]
 gi|110433455|gb|ABG74409.1| DnaA [Rickettsia conorii]
 gi|110433457|gb|ABG74410.1| DnaA [Israeli tick typhus rickettsia]
          Length = 199

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 42/133 (31%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121
           +   W     + SR   + +  K +   +   R                ++++DI  +  
Sbjct: 123 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|110433447|gb|ABG74405.1| DnaA [Rickettsia mongolotimonae]
          Length = 199

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 42/133 (31%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121
           +   W     + SR   + +  K +   +   R                ++++DI  +  
Sbjct: 123 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|110433399|gb|ABG74381.1| DnaA [Rickettsia slovaca 13-B]
 gi|110433401|gb|ABG74382.1| DnaA [Rickettsia slovaca]
 gi|110433403|gb|ABG74383.1| DnaA [Rickettsia slovaca]
          Length = 199

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 42/133 (31%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121
           +   W     + SR   + +  K +   +   R                ++++DI  +  
Sbjct: 123 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|13235398|emb|CAC33675.1| DnaA protein [Rickettsia rickettsii]
          Length = 255

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 42/133 (31%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178

Query: 82  NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121
           +   W     + SR   + +  K +   +   R                ++++DI  +  
Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 239 KDSTQEEFFHTFN 251


>gi|42779144|ref|NP_976391.1| cell division protein FtsH [Bacillus cereus ATCC 10987]
 gi|42735059|gb|AAS38999.1| cell division protein FtsH [Bacillus cereus ATCC 10987]
          Length = 633

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 369 A-DLENLLNEAALVAAR 384


>gi|83769748|dbj|BAE59883.1| unnamed protein product [Aspergillus oryzae]
          Length = 4913

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 55   LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
            ++    SWPS   ILVGPSG GK+ L    +  + ++    +A S D+  +D       E
Sbjct: 2031 MLCIEQSWPS---ILVGPSGCGKTTLIRKLAAVNGASLIE-LALSADTDTMDLIGGF--E 2084

Query: 115  DID 117
             ID
Sbjct: 2085 QID 2087


>gi|71411094|ref|XP_807811.1| ATP-dependent chaperone [Trypanosoma cruzi strain CL Brener]
 gi|70871890|gb|EAN85960.1| ATP-dependent chaperone, putative [Trypanosoma cruzi]
          Length = 468

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 51/145 (35%), Gaps = 32/145 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLED 115
           R  +L GP G GKS      + + R         S   S+ A          R  VLLED
Sbjct: 257 RGYLLHGPPGCGKSSFVMALAGELRLSICPLSLSSRGLSDEALVGLLNSAPLRSIVLLED 316

Query: 116 IDLLDFNDTQLFH-----IINS----IHQYDSSLLMT---------ARTFPVSWGVCLP- 156
           ID     D+   H     ++N+      Q    + MT         A   P    V L  
Sbjct: 317 IDRAFSADS---HITMSGLLNALDGVAAQEGRIVFMTTNHVERLDDALIRPGRCDVKLEI 373

Query: 157 DLCSRLKAATVVKISLPD-DDFLEK 180
            L SR +A  + +   PD DD L  
Sbjct: 374 GLLSRDQAQQLFRKFFPDADDKLRA 398


>gi|47570189|ref|ZP_00240843.1| cell division protein FtsH [Bacillus cereus G9241]
 gi|47553133|gb|EAL11530.1| cell division protein FtsH [Bacillus cereus G9241]
          Length = 633

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 369 A-DLENLLNEAALVAAR 384


>gi|30260256|ref|NP_842633.1| cell division protein FtsH [Bacillus anthracis str. Ames]
 gi|47525318|ref|YP_016667.1| cell division protein FtsH [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183099|ref|YP_026351.1| cell division protein FtsH [Bacillus anthracis str. Sterne]
 gi|49476704|ref|YP_034418.1| cell division protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52145151|ref|YP_081677.1| cell division protein [Bacillus cereus E33L]
 gi|65317526|ref|ZP_00390485.1| COG0465: ATP-dependent Zn proteases [Bacillus anthracis str. A2012]
 gi|118475836|ref|YP_892987.1| FtsH-2 peptidase [Bacillus thuringiensis str. Al Hakam]
 gi|165872578|ref|ZP_02217210.1| cell division protein FtsH [Bacillus anthracis str. A0488]
 gi|167635100|ref|ZP_02393417.1| cell division protein FtsH [Bacillus anthracis str. A0442]
 gi|167641516|ref|ZP_02399764.1| cell division protein FtsH [Bacillus anthracis str. A0193]
 gi|170707578|ref|ZP_02898031.1| cell division protein FtsH [Bacillus anthracis str. A0389]
 gi|177655624|ref|ZP_02936987.1| cell division protein FtsH [Bacillus anthracis str. A0174]
 gi|190568979|ref|ZP_03021880.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I]
 gi|196036369|ref|ZP_03103766.1| cell division protein FtsH [Bacillus cereus W]
 gi|196041768|ref|ZP_03109058.1| cell division protein FtsH [Bacillus cereus NVH0597-99]
 gi|196047383|ref|ZP_03114596.1| cell division protein FtsH [Bacillus cereus 03BB108]
 gi|206977945|ref|ZP_03238832.1| cell division protein FtsH [Bacillus cereus H3081.97]
 gi|217957641|ref|YP_002336183.1| cell division protein FtsH [Bacillus cereus AH187]
 gi|218901267|ref|YP_002449101.1| cell division protein FtsH [Bacillus cereus AH820]
 gi|222093835|ref|YP_002527884.1| cell division protein [Bacillus cereus Q1]
 gi|225862118|ref|YP_002747496.1| cell division protein FtsH [Bacillus cereus 03BB102]
 gi|227812739|ref|YP_002812748.1| cell division protein FtsH [Bacillus anthracis str. CDC 684]
 gi|229600537|ref|YP_002864717.1| cell division protein FtsH [Bacillus anthracis str. A0248]
 gi|254724206|ref|ZP_05185991.1| cell division protein FtsH [Bacillus anthracis str. A1055]
 gi|254735467|ref|ZP_05193175.1| cell division protein FtsH [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744631|ref|ZP_05202310.1| cell division protein FtsH [Bacillus anthracis str. Kruger B]
 gi|254756336|ref|ZP_05208365.1| cell division protein FtsH [Bacillus anthracis str. Vollum]
 gi|254762392|ref|ZP_05214234.1| cell division protein FtsH [Bacillus anthracis str. Australia 94]
 gi|300119160|ref|ZP_07056861.1| cell division protein FtsH [Bacillus cereus SJ1]
 gi|30253577|gb|AAP24119.1| cell division protein FtsH [Bacillus anthracis str. Ames]
 gi|47500466|gb|AAT29142.1| cell division protein FtsH [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177026|gb|AAT52402.1| cell division protein FtsH [Bacillus anthracis str. Sterne]
 gi|49328260|gb|AAT58906.1| cell division protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51978620|gb|AAU20170.1| cell division protein [Bacillus cereus E33L]
 gi|118415061|gb|ABK83480.1| membrane protease FtsH catalytic subunit [Bacillus thuringiensis
           str. Al Hakam]
 gi|164711706|gb|EDR17251.1| cell division protein FtsH [Bacillus anthracis str. A0488]
 gi|167510501|gb|EDR85899.1| cell division protein FtsH [Bacillus anthracis str. A0193]
 gi|167529574|gb|EDR92324.1| cell division protein FtsH [Bacillus anthracis str. A0442]
 gi|170127574|gb|EDS96448.1| cell division protein FtsH [Bacillus anthracis str. A0389]
 gi|172080035|gb|EDT65134.1| cell division protein FtsH [Bacillus anthracis str. A0174]
 gi|190559903|gb|EDV13887.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I]
 gi|195990999|gb|EDX54970.1| cell division protein FtsH [Bacillus cereus W]
 gi|196021785|gb|EDX60479.1| cell division protein FtsH [Bacillus cereus 03BB108]
 gi|196027388|gb|EDX66005.1| cell division protein FtsH [Bacillus cereus NVH0597-99]
 gi|206743851|gb|EDZ55271.1| cell division protein FtsH [Bacillus cereus H3081.97]
 gi|217067927|gb|ACJ82177.1| cell division protein FtsH [Bacillus cereus AH187]
 gi|218538348|gb|ACK90746.1| cell division protein FtsH [Bacillus cereus AH820]
 gi|221237882|gb|ACM10592.1| cell division protein [Bacillus cereus Q1]
 gi|225790446|gb|ACO30663.1| cell division protein FtsH [Bacillus cereus 03BB102]
 gi|227006912|gb|ACP16655.1| cell division protein FtsH [Bacillus anthracis str. CDC 684]
 gi|229264945|gb|ACQ46582.1| cell division protein FtsH [Bacillus anthracis str. A0248]
 gi|298723482|gb|EFI64223.1| cell division protein FtsH [Bacillus cereus SJ1]
 gi|324324055|gb|ADY19315.1| cell division protein FtsH [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 633

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 369 A-DLENLLNEAALVAAR 384


>gi|330816996|ref|YP_004360701.1| hypothetical protein bgla_1g21110 [Burkholderia gladioli BSR3]
 gi|327369389|gb|AEA60745.1| hypothetical protein bgla_1g21110 [Burkholderia gladioli BSR3]
          Length = 564

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 66/176 (37%), Gaps = 30/176 (17%)

Query: 49  IEQAVRLIDSWPSWPSRVVILV-GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
           +  A R++ +     +  ++L  G SGSGK+  + + + +  + R S+ A+    +L   
Sbjct: 330 LRTAERMV-ASRIGAAPCLLLCHGFSGSGKTSASRVLASRLGAIRLSSDAQRKRPLLDAA 388

Query: 108 RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV----CLPD---LCS 160
           +    +  +    +++  +  +   +    + +L +A T  V           D   L S
Sbjct: 389 Q----VSRLPASAYSEAAVGAVYQRLRDQAAEVLASAHTVIVDASFLRRQHRADFLALAS 444

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
           RL A                 I+   A R   ++ ++      R+ R L  A+  V
Sbjct: 445 RLGA--------------RAAILDFAASR-ATLEARVIDR--ARLARDLSDADAQV 483


>gi|325189289|emb|CCA23809.1| conserved unknown protein putative [Albugo laibachii Nc14]
          Length = 407

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 188 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGAELVQKYIGEGSRMVRE 235


>gi|323185143|gb|EFZ70508.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli 1357]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 34  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 89

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 90  ILFVDEVHRFNKSQQD 105


>gi|312132286|ref|YP_003999625.1| protein [Bifidobacterium longum subsp. longum BBMN68]
 gi|312132611|ref|YP_003999950.1| protein [Bifidobacterium longum subsp. longum BBMN68]
 gi|312132726|ref|YP_004000065.1| protein [Bifidobacterium longum subsp. longum BBMN68]
 gi|312132979|ref|YP_004000318.1| protein [Bifidobacterium longum subsp. longum BBMN68]
 gi|312133829|ref|YP_004001168.1| protein [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482900|ref|ZP_07941906.1| IstB-like ATP binding protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689993|ref|YP_004209727.1| hypothetical protein BLIF_1814 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|311772384|gb|ADQ01872.1| Hypothetical protein BBMN68_11 [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|311773119|gb|ADQ02607.1| Hypothetical protein BBMN68_1570 [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|311773558|gb|ADQ03046.1| Hypothetical protein BBMN68_340 [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|311773687|gb|ADQ03175.1| Hypothetical protein BBMN68_455 [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|311773963|gb|ADQ03451.1| Hypothetical protein BBMN68_714 [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|316915640|gb|EFV37056.1| IstB-like ATP binding protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|320461329|dbj|BAJ71949.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 261

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           ++L GP G+GKS LA      +          +   +L                  I   
Sbjct: 117 LVLYGPVGTGKSHLAIAIGRLACERGVPVRFFTATGLLMRLRRAQQENRLDRELASIGKA 176

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + +++++   L  ++     LF II+  ++   S++ T       WG  L D
Sbjct: 177 RLLIIDEFGYLPIDEEGSRLLFQIISDSYET-RSIIYTTNIEFSGWGRVLGD 227


>gi|290890726|ref|ZP_06553796.1| hypothetical protein AWRIB429_1186 [Oenococcus oeni AWRIB429]
 gi|290479701|gb|EFD88355.1| hypothetical protein AWRIB429_1186 [Oenococcus oeni AWRIB429]
          Length = 445

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 27/176 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL-----------IDTRKPVLL 113
           +I  GP G GK+ LA I + +S++    FS     +  I               R  V +
Sbjct: 55  MIFWGPPGVGKTTLAEIIAHRSKAKFITFSAATSGIKEIRKIMKDAENNRQFGVRTIVFI 114

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   +      F       +  S +L+ A T   S+ +    L SR K   + ++   
Sbjct: 115 DEIHRFNKAQQDSFLPY---VEKGSIILIGATTENPSFEINSA-LLSRSKVFVLRQLKSS 170

Query: 174 DDDFLEKVIVKM---FADRQIFIDKKLAAYIVQRMERSLV--FAEKLVDKMDNLAL 224
           D   L +  +K    FA ++I I  +    I            A   ++ ++   L
Sbjct: 171 DIVKLLENALKNPHGFAKQKISISSRTLQLIA-----DFANGDARTALNTLEMAVL 221


>gi|229192611|ref|ZP_04319572.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876]
 gi|228590918|gb|EEK48776.1| hypothetical protein bcere0002_42620 [Bacillus cereus ATCC 10876]
          Length = 476

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 90  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 149

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 150 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 198

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D +   + +   D++       + +  +   +        +  A   ++         
Sbjct: 199 TEDDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTT 258

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 259 DDQAA-----EITLEIAEECLQK 276


>gi|255539168|ref|XP_002510649.1| Cell division protease ftsH, putative [Ricinus communis]
 gi|223551350|gb|EEF52836.1| Cell division protease ftsH, putative [Ricinus communis]
          Length = 692

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +  D  
Sbjct: 302 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFDKA 353


>gi|254385665|ref|ZP_05000988.1| cell division protein FtsH [Streptomyces sp. Mg1]
 gi|194344533|gb|EDX25499.1| cell division protein FtsH [Streptomyces sp. Mg1]
          Length = 673

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 207 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 266

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 267 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 326

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P   D  L  V  +        +   L  
Sbjct: 327 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLSAVARRTPGFTGADLSNVLNE 386

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R ++ L+    L + +D 
Sbjct: 387 AALLTARSDKKLIDNHMLDEAIDR 410


>gi|183602356|ref|ZP_02963722.1| ATP binding protein of ABC transporter for glutamate_aspartate
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683329|ref|YP_002469712.1| ATP binding protein of ABC transporter for glutamate/aspartate
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191290|ref|YP_002968684.1| glutamate/aspartate ABC transporter ATP binding protein
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196696|ref|YP_002970251.1| glutamate/aspartate ABC transporter ATP binding protein
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218275|gb|EDT88920.1| ATP binding protein of ABC transporter for glutamate_aspartate
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620979|gb|ACL29136.1| ATP binding protein of ABC transporter for glutamate/aspartate
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249682|gb|ACS46622.1| ATP binding protein of ABC transporter for glutamate_aspartate
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251250|gb|ACS48189.1| ATP binding protein of ABC transporter for glutamate_aspartate
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289177406|gb|ADC84652.1| Transporter [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794283|gb|ADG33818.1| ATP binding protein of ABC transporter for glutamate/aspartate
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 297

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            +V+++VGPSGSGKS L    +             +LD  +I+T KP
Sbjct: 45  GKVLVIVGPSGSGKSTLLRAIA---GLEPIQGGTIALDGQVIETGKP 88


>gi|171683465|ref|XP_001906675.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941692|emb|CAP67346.1| unnamed protein product [Podospora anserina S mat+]
          Length = 984

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           ++++L GP G GK+ LA++ + ++ 
Sbjct: 295 KILVLHGPPGLGKTTLAHVCARQAG 319


>gi|170066801|ref|XP_001868229.1| fidgetin [Culex quinquefasciatus]
 gi|167862972|gb|EDS26355.1| fidgetin [Culex quinquefasciatus]
          Length = 607

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ +    + +S +T FS  A SL S  I   + ++
Sbjct: 364 PPRGILLFGPPGTGKTLIGKCIASQSNATFFSISASSLTSKWIGEGEKMV 413


>gi|146163969|ref|XP_001012750.2| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|146145857|gb|EAR92505.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 719

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 36/169 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + ++L GP G+GK+ +    +++S ST FS  A SL S  I   + ++          
Sbjct: 467 PPKGLLLFGPPGTGKTMIGKAIANQSGSTFFSISASSLTSKYIGEGEKMVKILFKLAEMR 526

Query: 113 ------LEDIDLL--DFNDTQLFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163
                 +++ID L     + +     N    +  +  L+          V L      L 
Sbjct: 527 QPSVIFIDEIDSLLCARQENE-----NEASRRIKTEFLVQMEGATSREEVRL------LL 575

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA-YIVQR-MERSLV 210
                +    DD    + + K++    I +   +A   +++R +ER   
Sbjct: 576 IGATNRPQELDDAVRRRFVKKLY----IPLPNMVAREQLIRRVIERESA 620


>gi|117620337|ref|YP_856543.1| ATP-dependent protease ATP-binding subunit ClpX [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|226706638|sp|A0KJU2|CLPX_AERHH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|117561744|gb|ABK38692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 424

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 22/125 (17%)

Query: 9   SFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRLIDSWPSW 62
           +  + ++ +   PK    +L    P  +    DD ++                     S 
Sbjct: 45  NDIIREEIREISPKRDGSELP--TPHEIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRSG 102

Query: 63  PSR--------VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
                       ++L+GP+GSGK+ LA   +      R  ++  ++      T    + E
Sbjct: 103 SESGGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLTEAGYVGE 156

Query: 115 DIDLL 119
           D++ +
Sbjct: 157 DVENI 161


>gi|108755190|emb|CAK32582.1| putative ATP-dependent Zn protease [uncultured organism]
          Length = 641

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 42/198 (21%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111
           +LVGP G+GK+ LA   + ++    F+        + +                     +
Sbjct: 192 LLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCII 251

Query: 112 LLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLP 156
            ++++D +            D  +  L  +   ++     +  +L++A   P      L 
Sbjct: 252 FIDELDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFESNEGVILISATNRPDVLDPAL- 310

Query: 157 DLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
            L   R     VV    P+ D L +  +     R++ +   + A ++ R       A  L
Sbjct: 311 -LRPGRFDRQVVV----PNPDILGREKIMKVHMRKVPLAPDVDARVIARGTPGFSGA-DL 364

Query: 216 VDKMDNLAL---SRGMGI 230
            + ++  AL    RG  +
Sbjct: 365 ANLVNEAALLAARRGRRV 382


>gi|6807907|emb|CAB70717.1| hypothetical protein [Homo sapiens]
          Length = 431

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 135 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 191


>gi|17865463|sp|Q9BAE0|FTSH_MEDSA RecName: Full=ATP-dependent zinc metalloprotease FTSH,
           chloroplastic; Flags: Precursor
 gi|13183728|gb|AAK15322.1|AF332134_1 FtsH protease [Medicago sativa]
          Length = 706

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++ +  FS  A     + +      + +
Sbjct: 290 LLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRD 336


>gi|103487091|ref|YP_616652.1| AAA family ATPase, CDC48 subfamily protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977168|gb|ABF53319.1| AAA family ATPase, CDC48 subfamily [Sphingopyxis alaskensis RB2256]
          Length = 773

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 33/163 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P R V+L GP G+GK+ LA   +++S +              +    K L  I     K 
Sbjct: 240 PPRGVLLHGPPGTGKTRLARAVANESEAQFFLINGPEIMGSAYGESEKRLRDIFEAAAKA 299

Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + +++ A   P +    
Sbjct: 300 APSILFIDEIDSIAPKRGQVHGEAEKRLVAQLLTLMDGLEPRTNLVVIAATNRPDAIDEA 359

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L     R     V  I +PD+    +++      R + +   +
Sbjct: 360 LRR-PGRFDREIV--IGVPDEKGRREIL--GIHTRGMPLGDDV 397



 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P++  +L GP G+GK+ LA   + +S +   +
Sbjct: 513 PAKGFLLYGPPGTGKTLLAKAAARESDANFIA 544


>gi|113477982|ref|YP_724043.1| FtsH peptidase [Trichodesmium erythraeum IMS101]
 gi|110169030|gb|ABG53570.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
           family M41 [Trichodesmium erythraeum IMS101]
          Length = 628

 Score = 38.6 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 45/214 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCI 268

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSAL 328

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD      ++     D+++   +     I +R       A
Sbjct: 329 ------LRPGRFDRQVTVDAPDIKGRLSILDVHARDKKLS-SEISLEAIARRTP-GFTGA 380

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             L + ++  A+       R  A  +L+     D
Sbjct: 381 -DLANLLNEAAILTARR--RKEAITMLEINDAVD 411


>gi|328865731|gb|EGG14117.1| 26S proteasome subunit ATPase 5 [Dictyostelium fasciculatum]
          Length = 396

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 175 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 222


>gi|330798429|ref|XP_003287255.1| 26S proteasome subunit ATPase 5 [Dictyostelium purpureum]
 gi|325082715|gb|EGC36188.1| 26S proteasome subunit ATPase 5 [Dictyostelium purpureum]
          Length = 398

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 177 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 224


>gi|323355782|gb|EGA87596.1| Rpt2p [Saccharomyces cerevisiae VL3]
          Length = 476

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 264


>gi|320163732|gb|EFW40631.1| FTSH4 [Capsaspora owczarzaki ATCC 30864]
          Length = 775

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           V+L GP G+GK+ LA   S++++++ F       D + +    
Sbjct: 369 VLLYGPPGTGKTLLAKAISNEAKASFFYASGSEFDELFVGVGS 411


>gi|312793295|ref|YP_004026218.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180435|gb|ADQ40605.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 338

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 85/204 (41%), Gaps = 25/204 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDT----RKPVLLE 114
           P   V+L GP G GK+ LANI +++            I ++ D + I T       + ++
Sbjct: 50  PLDHVLLYGPPGLGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFID 109

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS-- 160
           +I  L+    ++  +  ++      +++       +  + LP             L S  
Sbjct: 110 EIHRLNRTIEEV--LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPL 167

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R +   + ++     + L +++++  +  +  I+K+    I +R   +   A +L+ ++ 
Sbjct: 168 RDRFGIIERLDYYTVEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLR 227

Query: 221 NLALSRGMG-ITRSLAAEVLKETQ 243
           + A+ +  G IT  +A   L+  +
Sbjct: 228 DYAMVKHTGSITYEVAKSGLEMFE 251


>gi|312622644|ref|YP_004024257.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203111|gb|ADQ46438.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 338

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 85/204 (41%), Gaps = 25/204 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDT----RKPVLLE 114
           P   V+L GP G GK+ LANI +++            I ++ D + I T       + ++
Sbjct: 50  PLDHVLLYGPPGLGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFID 109

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS-- 160
           +I  L+    ++  +  ++      +++       +  + LP             L S  
Sbjct: 110 EIHRLNRTIEEV--LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPL 167

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R +   + ++     + L +++++  +  +  I+K+    I +R   +   A +L+ ++ 
Sbjct: 168 RDRFGIIERLDYYTVEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLR 227

Query: 221 NLALSRGMG-ITRSLAAEVLKETQ 243
           + A+ +  G IT  +A   L+  +
Sbjct: 228 DYAMVKHTGSITYEVAKSGLEMFE 251


>gi|312127828|ref|YP_003992702.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777847|gb|ADQ07333.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 338

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 85/204 (41%), Gaps = 25/204 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDT----RKPVLLE 114
           P   V+L GP G GK+ LANI +++            I ++ D + I T       + ++
Sbjct: 50  PLDHVLLYGPPGLGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFID 109

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS-- 160
           +I  L+    ++  +  ++      +++       +  + LP             L S  
Sbjct: 110 EIHRLNRTIEEV--LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPL 167

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R +   + ++     + L +++++  +  +  I+K+    I +R   +   A +L+ ++ 
Sbjct: 168 RDRFGIIERLDYYTVEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLR 227

Query: 221 NLALSRGMG-ITRSLAAEVLKETQ 243
           + A+ +  G IT  +A   L+  +
Sbjct: 228 DYAMVKHTGSITYEVAKSGLEMFE 251


>gi|302838905|ref|XP_002951010.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis]
 gi|300263705|gb|EFJ47904.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis]
          Length = 396

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 175 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 222


>gi|302774182|ref|XP_002970508.1| hypothetical protein SELMODRAFT_441130 [Selaginella moellendorffii]
 gi|302793650|ref|XP_002978590.1| hypothetical protein SELMODRAFT_177014 [Selaginella moellendorffii]
 gi|300153939|gb|EFJ20576.1| hypothetical protein SELMODRAFT_177014 [Selaginella moellendorffii]
 gi|300162024|gb|EFJ28638.1| hypothetical protein SELMODRAFT_441130 [Selaginella moellendorffii]
          Length = 395

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 174 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 221


>gi|302793644|ref|XP_002978587.1| hypothetical protein SELMODRAFT_108927 [Selaginella moellendorffii]
 gi|300153936|gb|EFJ20573.1| hypothetical protein SELMODRAFT_108927 [Selaginella moellendorffii]
          Length = 352

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 131 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 178


>gi|302826746|ref|XP_002994774.1| hypothetical protein SELMODRAFT_139105 [Selaginella moellendorffii]
 gi|300136905|gb|EFJ04162.1| hypothetical protein SELMODRAFT_139105 [Selaginella moellendorffii]
          Length = 352

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 131 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 178


>gi|299472009|emb|CBN80092.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 398

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 225


>gi|291547110|emb|CBL20218.1| ATPase related to the helicase subunit of the Holliday junction
           resolvase [Ruminococcus sp. SR1/5]
          Length = 440

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 64/170 (37%), Gaps = 24/170 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           VI  GP G+GK+ LA + ++ + ++     A       ++       +D+ +     T L
Sbjct: 55  VIFYGPPGTGKTTLAKVIANTTSASFTQINATVAGKKDMEAVVKQAQDDLGMYGKK-TIL 113

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   + + ++   +
Sbjct: 114 FIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SIIFELKSLE 169

Query: 175 DDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217
              ++++I++   D  R +      I++    ++          A   ++
Sbjct: 170 IPEIKELILRAVNDPERGMGSYGAVIEEDALEFLADMAGGDARSALNAIE 219


>gi|258592316|emb|CBE68625.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease
           [NC10 bacterium 'Dutch sediment']
          Length = 603

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L+GP G+GK+ LA   + ++ +  FS        + +      + +
Sbjct: 189 VLLMGPPGTGKTLLARAIAGEANAPFFSISGSDFVEMFVGVGASRVRD 236


>gi|281425637|ref|ZP_06256550.1| ATPase, AAA family [Prevotella oris F0302]
 gi|281400224|gb|EFB31055.1| ATPase, AAA family [Prevotella oris F0302]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 23/133 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVL- 112
            IL GP G GK+ LA I ++K  +  +               I K+ ++   +T  P+L 
Sbjct: 42  FILWGPPGVGKTTLAQIIANKLETPFYTLSAVTSGVKDVRDVIEKAKNNRFFNTASPILF 101

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +     L+ A T   S+ V  P L SR     +  + 
Sbjct: 102 IDEIHRFSKSQQDSLL----GAVERGVVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 153

Query: 172 LPDDDFLEKVIVK 184
             D + + +++ +
Sbjct: 154 SLDKEDMLQLVNR 166


>gi|281205166|gb|EFA79359.1| 26S proteasome subunit ATPase 5 [Polysphondylium pallidum PN500]
          Length = 412

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 175 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 222


>gi|255634811|gb|ACU17766.1| unknown [Glycine max]
          Length = 395

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 197 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 244


>gi|240276675|gb|EER40186.1| ATPase family AAA protein [Ajellomyces capsulatus H143]
          Length = 411

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 131 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 161


>gi|294931935|ref|XP_002780060.1| tat-binding protein, putative [Perkinsus marinus ATCC 50983]
 gi|239889904|gb|EER11855.1| tat-binding protein, putative [Perkinsus marinus ATCC 50983]
          Length = 408

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 188 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 235


>gi|294888080|ref|XP_002772340.1| tat-binding protein, putative [Perkinsus marinus ATCC 50983]
 gi|239876459|gb|EER04156.1| tat-binding protein, putative [Perkinsus marinus ATCC 50983]
          Length = 408

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 188 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 235


>gi|254574502|ref|XP_002494360.1| ATPase in ER, nuclear membrane and cytosol with homology to
           mammalian p97 [Pichia pastoris GS115]
 gi|238034159|emb|CAY72181.1| ATPase in ER, nuclear membrane and cytosol with homology to
           mammalian p97 [Pichia pastoris GS115]
 gi|328353810|emb|CCA40207.1| transitional endoplasmic reticulum ATPase [Pichia pastoris CBS
           7435]
          Length = 830

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + +++ GP G+GK+ +A   ++++ +  F                SN+  + +    +
Sbjct: 247 PPKGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRSAFEEAEKN 306

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +    + +++ A   P S    
Sbjct: 307 APSIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNIVVIAATNRPNSIDPA 366

Query: 155 L 155
           L
Sbjct: 367 L 367


>gi|229093470|ref|ZP_04224573.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42]
 gi|228689941|gb|EEL43745.1| hypothetical protein bcere0021_41940 [Bacillus cereus Rock3-42]
          Length = 430

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|229111872|ref|ZP_04241418.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15]
 gi|229146970|ref|ZP_04275334.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24]
 gi|228636569|gb|EEK93035.1| hypothetical protein bcere0012_41090 [Bacillus cereus BDRD-ST24]
 gi|228671628|gb|EEL26926.1| hypothetical protein bcere0018_41160 [Bacillus cereus Rock1-15]
          Length = 476

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 90  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 149

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 150 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 198

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            ++ +   + +   D++       + +  +   +        +  A   ++         
Sbjct: 199 TEEDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTT 258

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 259 DDQAA-----EITLEIAEECLQK 276


>gi|224111360|ref|XP_002315825.1| predicted protein [Populus trichocarpa]
 gi|222864865|gb|EEF01996.1| predicted protein [Populus trichocarpa]
          Length = 409

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 188 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 235


>gi|224099663|ref|XP_002311569.1| predicted protein [Populus trichocarpa]
 gi|222851389|gb|EEE88936.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 233


>gi|221111048|ref|XP_002158993.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 180

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
              +  ++L G SG GK+ +A  + ++S 
Sbjct: 37 QDANNSSLVLYGMSGVGKTHIARKFCEQSN 66


>gi|148909913|gb|ABR18043.1| unknown [Picea sitchensis]
          Length = 288

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 67  VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 114


>gi|217072902|gb|ACJ84811.1| unknown [Medicago truncatula]
          Length = 236

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     +
Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESAVI 220


>gi|215259783|gb|ACJ64383.1| 26S protease regulatory subunit 8 [Culex tarsalis]
          Length = 267

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I  R  ++ E
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGERSRMVRE 229


>gi|222529108|ref|YP_002572990.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254767406|sp|B9MRB3|RUVB_ANATD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|222455955|gb|ACM60217.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 338

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 85/204 (41%), Gaps = 25/204 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDT----RKPVLLE 114
           P   V+L GP G GK+ LANI +++            I ++ D + I T       + ++
Sbjct: 50  PLDHVLLYGPPGLGKTTLANIIANEMGVDIKITSGPAIERAGDLVAILTNIGENNILFID 109

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS-- 160
           +I  L+    ++  +  ++      +++       +  + LP             L S  
Sbjct: 110 EIHRLNRTIEEV--LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPL 167

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R +   + ++     + L +++++  +  +  I+K+    I +R   +   A +L+ ++ 
Sbjct: 168 RDRFGIIERLDYYTVEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLR 227

Query: 221 NLALSRGMG-ITRSLAAEVLKETQ 243
           + A+ +  G IT  +A   L+  +
Sbjct: 228 DYAMVKHTGSITYEVAKSGLEMFE 251


>gi|197312891|gb|ACH63226.1| putative 26S proteasome AAA-ATPase subunit RPT6a [Rheum australe]
          Length = 395

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 194 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 241


>gi|158828259|gb|ABW81135.1| unknown [Capsella rubella]
          Length = 419

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 245


>gi|118487039|gb|ABK95350.1| unknown [Populus trichocarpa]
          Length = 426

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 205 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 252


>gi|225430151|ref|XP_002284747.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296081963|emb|CBI20968.3| unnamed protein product [Vitis vinifera]
          Length = 420

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 199 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 246


>gi|156082451|ref|XP_001608710.1| tat-binding protein-like protein [Babesia bovis T2Bo]
 gi|154795959|gb|EDO05142.1| tat-binding protein-like protein [Babesia bovis]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 233


>gi|156095959|ref|XP_001614014.1| 26S protease regulatory subunit 8 [Plasmodium vivax SaI-1]
 gi|148802888|gb|EDL44287.1| 26S protease regulatory subunit 8, putative [Plasmodium vivax]
          Length = 424

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 205 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 252


>gi|145589940|ref|YP_001156537.1| tRNA delta(2)-isopentenylpyrophosphate transferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|239977435|sp|A4SZQ9|MIAA_POLSQ RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|145048346|gb|ABP34973.1| tRNA delta(2)-isopentenylpyrophosphate transferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 333

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 26/41 (63%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105
            ++ +VGP+G+GK+ LA   ++ ++S   +    S+DS L+
Sbjct: 17  PILCIVGPTGAGKTHLAMSLAEHAQSIGLTVELISMDSALV 57


>gi|126178781|ref|YP_001046746.1| replication factor C large subunit [Methanoculleus marisnigri JR1]
 gi|150415664|sp|A3CTR4|RFCL_METMJ RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|125861575|gb|ABN56764.1| replication factor C large subunit [Methanoculleus marisnigri JR1]
          Length = 454

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 39/202 (19%)

Query: 48  AIEQAVRLIDSW-PSWPSRV--VILVGPSGSGKSCLANIWSD----------------KS 88
               AVRLI  W   W  +   +IL G  G+GK+  A   ++                K+
Sbjct: 17  GNSGAVRLIYEWARDWSRQKKPLILYGKPGTGKTSSAYALANDMNWEVVELNASDQRTKA 76

Query: 89  RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFP 148
              R +    +  S+   +RK +LL++ D L                   +  +      
Sbjct: 77  ALERVAGAGSTTASLSGASRKLILLDEADNLHGQ-----------ADRGGAKAIVEIIAA 125

Query: 149 VSWGVCL--PD---LCSRLKAAT-VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
               + L   D   L   LKA T  V+        +   + ++ A   +  D      I 
Sbjct: 126 AQQPIILIANDYYSLTRELKAVTEPVQFRALQARSIVPRLRQICAAEGVACDPAALDDIA 185

Query: 203 QRMERSLVFAEKLVDKMDNLAL 224
            R    +  A   V+ +   A+
Sbjct: 186 NRAGGDMRAA---VNMLYAAAI 204


>gi|50311433|ref|XP_455741.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644877|emb|CAG98449.1| KLLA0F14707p [Kluyveromyces lactis]
          Length = 434

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 212 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 261


>gi|32400818|gb|AAP80641.1|AF475120_1 26S proteasome ATPase subunit [Triticum aestivum]
          Length = 287

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 160 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 207


>gi|124806952|ref|XP_001350873.1| tat-binding protein homolog [Plasmodium falciparum 3D7]
 gi|23497002|gb|AAN36553.1|AE014851_72 tat-binding protein homolog [Plasmodium falciparum 3D7]
          Length = 435

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 216 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 263


>gi|6599051|emb|CAB63651.1| 26S proteasome subunit 8 [Fagus sylvatica]
          Length = 418

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 195 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 242


>gi|557599|gb|AAA97498.1| ATPase [Saccharomyces cerevisiae]
          Length = 437

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 264


>gi|6652888|gb|AAF22526.1|AF123395_1 26S proteasome AAA-ATPase subunit RPT6a [Arabidopsis thaliana]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 184 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 231


>gi|45190596|ref|NP_984850.1| AEL011Wp [Ashbya gossypii ATCC 10895]
 gi|44983575|gb|AAS52674.1| AEL011Wp [Ashbya gossypii ATCC 10895]
          Length = 437

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 264


>gi|68067983|ref|XP_675910.1| tat-binding protein [Plasmodium berghei strain ANKA]
 gi|56495356|emb|CAH93865.1| tat-binding protein homolog, putative [Plasmodium berghei]
          Length = 422

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 203 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 250


>gi|18420092|ref|NP_568389.1| RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase [Arabidopsis
           thaliana]
 gi|75168996|sp|Q9C5U3|PRS8A_ARATH RecName: Full=26S protease regulatory subunit 8 homolog A; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT6a; AltName:
           Full=26S proteasome subunit 8 homolog A; AltName:
           Full=Regulatory particle triple-A ATPase subunit 6a
 gi|13537115|dbj|BAB40755.1| AtSUG1 [Arabidopsis thaliana]
 gi|17473854|gb|AAL38350.1| unknown protein [Arabidopsis thaliana]
 gi|32306505|gb|AAP78936.1| At5g19990 [Arabidopsis thaliana]
 gi|332005394|gb|AED92777.1| regulatory particle triple-A ATPase 6A [Arabidopsis thaliana]
          Length = 419

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 245


>gi|1078797|pir||S51042 tat-binding protein homolog - malaria parasite (Plasmodium
           falciparum)
          Length = 435

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 216 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 263


>gi|6320197|ref|NP_010277.1| Rpt2p [Saccharomyces cerevisiae S288c]
 gi|730904|sp|P40327|PRS4_YEAST RecName: Full=26S protease regulatory subunit 4 homolog; AltName:
           Full=Tat-binding homolog 5
 gi|531758|emb|CAA56957.1| YTA5 [Saccharomyces cerevisiae]
 gi|683690|emb|CAA88352.1| homolog to S4 subunit of human 26S proteasome (X81070)
           [Saccharomyces cerevisiae]
 gi|1430967|emb|CAA98563.1| RPT2 [Saccharomyces cerevisiae]
 gi|151941983|gb|EDN60339.1| proteasome ATPase subunit [Saccharomyces cerevisiae YJM789]
 gi|190405027|gb|EDV08294.1| one of the ATPase subunits of the proteasome [Saccharomyces
           cerevisiae RM11-1a]
 gi|207346882|gb|EDZ73241.1| YDL007Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256268983|gb|EEU04326.1| Rpt2p [Saccharomyces cerevisiae JAY291]
 gi|259145238|emb|CAY78502.1| Rpt2p [Saccharomyces cerevisiae EC1118]
 gi|285811017|tpg|DAA11841.1| TPA: Rpt2p [Saccharomyces cerevisiae S288c]
 gi|323305747|gb|EGA59487.1| Rpt2p [Saccharomyces cerevisiae FostersB]
 gi|323334249|gb|EGA75631.1| Rpt2p [Saccharomyces cerevisiae AWRI796]
 gi|323338361|gb|EGA79588.1| Rpt2p [Saccharomyces cerevisiae Vin13]
 gi|323349496|gb|EGA83720.1| Rpt2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 437

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 264


>gi|116204757|ref|XP_001228189.1| hypothetical protein CHGG_10262 [Chaetomium globosum CBS 148.51]
 gi|88176390|gb|EAQ83858.1| hypothetical protein CHGG_10262 [Chaetomium globosum CBS 148.51]
          Length = 1066

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           +L GP G+GK+ LA   + +S ++     A S++   +   +
Sbjct: 792 LLYGPPGTGKTLLAKAVAKESGASMLEVSAASINDKYVGQSE 833


>gi|146296578|ref|YP_001180349.1| Holliday junction DNA helicase B [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166231474|sp|A4XJS3|RUVB_CALS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|145410154|gb|ABP67158.1| Holliday junction DNA helicase subunit RuvB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 338

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 85/204 (41%), Gaps = 25/204 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDT----RKPVLLE 114
           P   V+L GP G GK+ LANI +++            I ++ D + I T       + ++
Sbjct: 50  PLDHVLLYGPPGLGKTTLANIIANEMGVDIKVTSGPAIERAGDLVAILTNIGENNILFID 109

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS-- 160
           +I  L+    ++  +  ++      +++       +  + LP             L S  
Sbjct: 110 EIHRLNRTIEEV--LYPAMEDKKVDIVIGKGPSAKTIRLTLPPFTLIGATTRAGLLSSPL 167

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
           R +   + ++     + L +++++  +  +  I+K+    I +R   +   A +L+ ++ 
Sbjct: 168 RDRFGIIERLDYYTVEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANRLLRRLR 227

Query: 221 NLALSRGMG-ITRSLAAEVLKETQ 243
           + A+ +  G IT  +A   L+  +
Sbjct: 228 DYAMVKHTGSITYEVAKSGLEMFE 251


>gi|66801413|ref|XP_629632.1| 26S proteasome subunit ATPase 5 [Dictyostelium discoideum AX4]
 gi|166208497|sp|P34124|PRS8_DICDI RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName:
           Full=Tat-binding protein homolog 10
 gi|60462974|gb|EAL61170.1| 26S proteasome subunit ATPase 5 [Dictyostelium discoideum AX4]
          Length = 403

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 229


>gi|83315560|ref|XP_730846.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490696|gb|EAA22411.1| tat-binding protein homolog [Plasmodium yoelii yoelii]
          Length = 442

 Score = 38.6 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 203 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 250


>gi|320166895|gb|EFW43794.1| tat-binding protein 10 [Capsaspora owczarzaki ATCC 30864]
          Length = 425

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 204 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 251


>gi|303311035|ref|XP_003065529.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105191|gb|EER23384.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320039331|gb|EFW21265.1| vacuolar sorting protein 4b [Coccidioides posadasii str. Silveira]
          Length = 772

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 517 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISATSLTS 556


>gi|229198526|ref|ZP_04325230.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293]
 gi|228585029|gb|EEK43143.1| hypothetical protein bcere0001_40540 [Bacillus cereus m1293]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|229586748|ref|YP_002845249.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           africae ESF-5]
 gi|228021798|gb|ACP53506.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           africae ESF-5]
          Length = 344

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            ++IL GP+ SGKS L +  +        + +  +    I I T  P          +  
Sbjct: 43  SIMILCGPTASGKSYLGHELAKAYNGEIINIDSMQVYKEIPIITASP-------PKSYKT 95

Query: 124 TQLFHIIN 131
             L+H+ N
Sbjct: 96  EILYHLYN 103


>gi|209877256|ref|XP_002140070.1| 26S protease regulatory subunit 8 [Cryptosporidium muris RN66]
 gi|209555676|gb|EEA05721.1| 26S protease regulatory subunit 8, putative [Cryptosporidium muris
           RN66]
          Length = 396

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 14/76 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E            
Sbjct: 177 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE------------ 224

Query: 127 FHIINSIHQYDSSLLM 142
             +     ++  SL+ 
Sbjct: 225 --LFVMAREHAPSLIF 238


>gi|157780276|gb|ABV71694.1| ORF1 [Human parvovirus 4]
          Length = 508

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 58  SWPS--WPSRVVI-LVGPSGSGKSCLANIWSDKS 88
           +W    WP R  I L GP+ +GK+ LA   ++ S
Sbjct: 163 AWARGVWPKRRAIWLWGPASTGKTLLAAAIANLS 196


>gi|206976016|ref|ZP_03236926.1| ATPase, AAA family [Bacillus cereus H3081.97]
 gi|206745768|gb|EDZ57165.1| ATPase, AAA family [Bacillus cereus H3081.97]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|156377219|ref|XP_001630754.1| predicted protein [Nematostella vectensis]
 gi|156217781|gb|EDO38691.1| predicted protein [Nematostella vectensis]
          Length = 703

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 30/128 (23%)

Query: 39  SRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           +RD+ ++  A     + +      P  V    + ++GP  SGK+ LA  ++ +    R S
Sbjct: 179 ARDEFVLCPA-----KYLKQPS--PKPVVPIRIAIIGPPKSGKTTLAKRFTAEYGVVRLS 231

Query: 95  ------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL- 141
                       +  +    I +      ++++  ++   D  L    N   Q    +L 
Sbjct: 232 IGEAIRKVLNNQSHTELARQINLRVGAHRVVDEASMVQAVDITLL---NMHFQTGGFVLD 288

Query: 142 ---MTART 146
              +TAR 
Sbjct: 289 GYPLTARQ 296


>gi|121700090|ref|XP_001268310.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119396452|gb|EAW06884.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 805

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 550 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 589


>gi|15604370|ref|NP_220886.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           prowazekii str. Madrid E]
 gi|6225674|sp|Q9ZD37|MIAA_RICPR RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|3861062|emb|CAA14962.1| TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE (miaA)
           [Rickettsia prowazekii]
 gi|292572123|gb|ADE30038.1| tRNAdelta(2)-isopentenylpyrophosphate transferase [Rickettsia
           prowazekii Rp22]
          Length = 311

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++IL GP+ SGKSCL +  +        + +  +    I I T  P+ + + D+      
Sbjct: 6   IIILCGPTASGKSCLGHELAKAYDCEIINIDSMQVYKEIPIITASPIQIYNTDIH----- 60

Query: 125 QLFHIIN 131
             +H+ N
Sbjct: 61  --YHLYN 65


>gi|58616639|ref|YP_195848.1| IstB protein [Achromobacter xylosoxidans A8]
 gi|58616675|ref|YP_195884.1| transposase IstB protein [Achromobacter xylosoxidans A8]
 gi|311109706|ref|YP_003982558.1| istB-like ATP binding family protein 1 [Achromobacter xylosoxidans
           A8]
 gi|311109743|ref|YP_003982595.1| istB-like ATP binding family protein 3 [Achromobacter xylosoxidans
           A8]
 gi|1805362|dbj|BAA33970.1| IstB [Cupriavidus necator]
 gi|26185985|emb|CAD56212.1| IstB protein [Achromobacter xylosoxidans]
 gi|58416266|emb|CAI47861.1| transposase IstB protein [Achromobacter xylosoxidans]
 gi|306415536|gb|ADM86740.1| cointegrase [Delftia acidovorans]
 gi|310764395|gb|ADP19843.1| istB-like ATP binding family protein 1 [Achromobacter xylosoxidans
           A8]
 gi|310764432|gb|ADP19880.1| istB-like ATP binding family protein 3 [Achromobacter xylosoxidans
           A8]
          Length = 264

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 25/154 (16%)

Query: 22  KNKEEQL-FFSFPRCLGISRDDLLVHSAIEQ-AVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           ++   QL    FP    ++  D       E  A +L        +  V+LVG  G+GK+ 
Sbjct: 58  RSVAYQLKVARFPVYRDLAGFDFAHSEVNEALARQLHRCEFLEEANNVVLVGGPGTGKTH 117

Query: 80  LA-----NIWSDKSRSTRFSNIAKSLDSILIDTRK------PVLLEDIDLLDFND----- 123
           LA            R  RF +  + ++++ ++  +         L   DL+  ++     
Sbjct: 118 LATALGVQAIEHHHRRVRFFSTVELVNALEVEKAQGKSGQIATRLMYADLVILDELGYLP 177

Query: 124 ------TQLFHIINSIHQYDSSLLMTARTFPVSW 151
                   LFH+++ +++  +S+++T       W
Sbjct: 178 FSASGGALLFHLLSKLYER-TSVVITTNLSFSEW 210


>gi|47566587|ref|ZP_00237409.1| ATPase, AAA family [Bacillus cereus G9241]
 gi|47556617|gb|EAL14949.1| ATPase, AAA family [Bacillus cereus G9241]
          Length = 431

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMYRHLILILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|67541048|ref|XP_664298.1| hypothetical protein AN6694.2 [Aspergillus nidulans FGSC A4]
 gi|40739322|gb|EAA58512.1| hypothetical protein AN6694.2 [Aspergillus nidulans FGSC A4]
          Length = 1301

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 315 KVLLLCGPPGLGKTTLAHVCARQAG 339


>gi|332526025|ref|ZP_08402163.1| recombination factor protein RarA [Rubrivivax benzoatilyticus JA2]
 gi|332109868|gb|EGJ10496.1| recombination factor protein RarA [Rubrivivax benzoatilyticus JA2]
          Length = 447

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 24/172 (13%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111
             +IL GP G GK+ LA + +    +                  +  + D+        V
Sbjct: 63  PSMILWGPPGVGKTTLARLVAGSVDAQFLVLSAVLAGVKDIRDAVELAKDARRRGQATVV 122

Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            ++++   +      F       +      + A T   S+ V    L SR   ATV  + 
Sbjct: 123 FVDEVHRFNKAQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---ATVHVLK 175

Query: 172 LPDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
              D+ L  ++ +  A      +       +V   +     A +L++  DNL
Sbjct: 176 SLADEDLGVLLDRARALLGAPPLTDSARTRLVAHAD---GDARRLLNAYDNL 224


>gi|313113476|ref|ZP_07799065.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624203|gb|EFQ07569.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 723

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           V+LVGP G+GK+ LA   + ++    +S        + +      + +  D  
Sbjct: 250 VLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEMYVGVGASRVRDLFDKA 302


>gi|307197198|gb|EFN78520.1| 26S protease regulatory subunit 7 [Harpegnathos saltator]
          Length = 434

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 268

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 329 DPALMRPGRLDRKIEFGLPDLEGR 352


>gi|301607417|ref|XP_002933319.1| PREDICTED: fidgetin-like, partial [Xenopus (Silurana) tropicalis]
          Length = 745

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             A   + + P    R ++L GP G+GK+ L    + +  +T F   A +L +  I   +
Sbjct: 495 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKISASNLVTKWITEGE 550

Query: 110 PVL 112
            ++
Sbjct: 551 KIV 553


>gi|297808061|ref|XP_002871914.1| ATSUG1 [Arabidopsis lyrata subsp. lyrata]
 gi|297317751|gb|EFH48173.1| ATSUG1 [Arabidopsis lyrata subsp. lyrata]
          Length = 419

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 245


>gi|291166156|gb|EFE28202.1| phosphoribulokinase family protein [Filifactor alocis ATCC 35896]
          Length = 542

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----DIDLL 119
            R++++ GPS SGK+  A+    + +    S I  S+D+  +D  +  L E    D + +
Sbjct: 276 GRIILIAGPSSSGKTSFAHRLELQLKVNGLSPITISMDNYFVDREETPLDEHGEPDFETV 335

Query: 120 DFNDTQLFH 128
           D  D  LF+
Sbjct: 336 DAVDITLFN 344


>gi|303272525|ref|XP_003055624.1| ATP-binding cassette superfamily [Micromonas pusilla CCMP1545]
 gi|226463598|gb|EEH60876.1| ATP-binding cassette superfamily [Micromonas pusilla CCMP1545]
          Length = 694

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 35 CLGISRDD--LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87
             ++  D   +V  A    +          SR++ ++GPSGSGK+ L N+ + +
Sbjct: 9  DDALAWSDIRYVVGRANRVVLDGTSGVAR-ASRLLGILGPSGSGKTTLLNVLAGR 62


>gi|221109190|ref|XP_002169357.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 518

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 224 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 280


>gi|54295499|ref|YP_127914.1| hypothetical protein lpl2586 [Legionella pneumophila str. Lens]
 gi|53755331|emb|CAH16827.1| hypothetical protein lpl2586 [Legionella pneumophila str. Lens]
          Length = 360

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 27/122 (22%)

Query: 57  DSWPSW----PSRVVILVGPSGSGKSCLA-----------------NIWSDKSRS--TRF 93
           DSW  W    P + + + GP G GK+ L                  + +  +  +   R 
Sbjct: 41  DSWFPWRKKPPIKGLYIYGPVGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRL 100

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----LFHIINSIHQYDSSLLMTARTFPV 149
                 L  I  +  K + L   D    +D      L  ++ ++H Y   L++++ T P 
Sbjct: 101 QGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTRPD 160

Query: 150 SW 151
             
Sbjct: 161 EL 162


>gi|49473840|ref|YP_031882.1| glycerol-3-phosphate transporter ATP-binding subunit [Bartonella
           quintana str. Toulouse]
 gi|81827656|sp|Q6G194|UGPC_BARQU RecName: Full=sn-glycerol-3-phosphate import ATP-binding protein
           UgpC
 gi|49239343|emb|CAF25676.1| Sugar ABC transporter, ATP-binding protein [Bartonella quintana
           str. Toulouse]
          Length = 348

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           +++LVGPSG GKS L  I +      + ++    +D   I+ R+P 
Sbjct: 32  LLVLVGPSGCGKSTLLRIIA---GLEQVTSGELYIDDERINDREPA 74


>gi|71019167|ref|XP_759814.1| hypothetical protein UM03667.1 [Ustilago maydis 521]
 gi|46099612|gb|EAK84845.1| hypothetical protein UM03667.1 [Ustilago maydis 521]
          Length = 566

 Score = 38.6 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 38/189 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRST----RFSNIAKSLDSILIDTRKP-----VLLED 115
             +IL GP G+GK+ LA + +  + ST    R          I            +L E 
Sbjct: 61  PSMILWGPPGTGKTTLARLLAKSASSTDSTCRQGPPPHRFVEISATNSGANDVKKILDEA 120

Query: 116 IDLLDF--NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR 161
           +  L+     T LF       N           +    +L+ A T   S+ +    L SR
Sbjct: 121 LHRLELTAQRTLLFIDEIQRFNRAQQDVLLPAVEKGQIVLVAATTENPSFRLQSA-LISR 179

Query: 162 LKAATVVKISLPDD--DFLEKVI--VKMFAD---------RQIFIDKKLAAYIVQRMERS 208
           ++   + K+S+ D+    L   +  VK  +D            +ID+ L  +I    +  
Sbjct: 180 MRVFVLTKLSV-DECCQVLRNALASVKRESDQADQHAECVAAAYIDEHLIRWIANMADGD 238

Query: 209 LVFAEKLVD 217
              A   ++
Sbjct: 239 ARTALGALE 247


>gi|312143983|ref|YP_003995429.1| Holliday junction DNA helicase RuvB [Halanaerobium sp.
           'sapolanicus']
 gi|311904634|gb|ADQ15075.1| Holliday junction DNA helicase RuvB [Halanaerobium sp.
           'sapolanicus']
          Length = 344

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 13/94 (13%)

Query: 43  LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
            +  +   +    +D         V+L GP G GK+ LA I +++           +++ 
Sbjct: 44  FIEAACNRE--EALDH--------VMLYGPPGLGKTTLAAIIANELNVNIHQTSGPAIER 93

Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136
                     L+  D+L  ++    H +N + + 
Sbjct: 94  PGDLASILTNLQSKDVLFIDEI---HRLNKMVEE 124


>gi|307266278|ref|ZP_07547819.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326391162|ref|ZP_08212707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
 gi|306918728|gb|EFN48961.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325992795|gb|EGD51242.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 611

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 68/205 (33%), Gaps = 47/205 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKKNAPCI 256

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 257 VFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSVNEGIIVIAATNRPDILDPAL 316

Query: 156 PDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       + + +PD    E+++     ++ +  D  L   + +R       A
Sbjct: 317 ------LRPGRFDRHITVGIPDIKGREEILKIHARNKPLAPDVSL-QVLARRTP-GFTGA 368

Query: 213 EKLVDKMDNLALSRGMG----ITRS 233
             L + M+  AL         IT +
Sbjct: 369 -DLENLMNEAALLAARRGLKQITMA 392


>gi|293392544|ref|ZP_06636864.1| ATP-dependent Clp protease ATP-binding subunit [Serratia odorifera
           DSM 4582]
 gi|291424946|gb|EFE98155.1| ATP-dependent Clp protease ATP-binding subunit [Serratia odorifera
           DSM 4582]
          Length = 437

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 60  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 109

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 110 YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 163

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 164 EAGYVGEDVENI 175


>gi|270006572|gb|EFA03020.1| hypothetical protein TcasGA2_TC010443 [Tribolium castaneum]
          Length = 478

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 37/168 (22%)

Query: 65  RVVILVGPSGSGKSCLANI-----------------WSDKSRSTRFSNI-AKSLDSILID 106
             ++L GP G GK+ L+ +                  +  +      NI + +       
Sbjct: 129 PNMVLWGPPGCGKTSLSGVIQGICKSNPTKLKFVSLCAATAGVKDVQNIVSAAKLQQKFG 188

Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166
            R  + +++I   +     +F +     +    +L+ A T   S+ V    L SR     
Sbjct: 189 CRTVLFMDEIHRFNKKQQDIFLLH---VEKGDIILVGATTENPSFTVNSA-LLSR---CR 241

Query: 167 VVKISLPDDDFLEKVIV------------KMFADRQIFIDKKLAAYIV 202
           V+ +   D D L +++             K    +   +      ++ 
Sbjct: 242 VIVLQKLDPDCLYQILERGARNFNVEVVDKGARSKGFAVQADALKWLA 289


>gi|320007798|gb|ADW02648.1| AFG1-family ATPase [Streptomyces flavogriseus ATCC 33331]
          Length = 363

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 16/110 (14%)

Query: 58  SWPSWPSRVVILVGPSGSGKSC-LANIWSDKSRS-------------TRFSNIAKSLDSI 103
           + P+ P R V L G  G GK+  LA++W     +                  +       
Sbjct: 93  AAPTGP-RGVYLDGGYGVGKTHLLASLWHATPAAPSLKAFGTFVELTNLVGALGFQQTVQ 151

Query: 104 LIDTRKPVLLEDIDLLDFNDTQLF-HIINSIHQYDSSLLMTARTFPVSWG 152
            +   + + +++ +L D  DT L   +++ + +   +L  T+ T P   G
Sbjct: 152 TLSGHRLLCIDEFELDDPGDTVLVSSLLSRLVEAGVALAATSNTLPGKLG 201


>gi|242053915|ref|XP_002456103.1| hypothetical protein SORBIDRAFT_03g030500 [Sorghum bicolor]
 gi|241928078|gb|EES01223.1| hypothetical protein SORBIDRAFT_03g030500 [Sorghum bicolor]
          Length = 426

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++ E
Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRE 252


>gi|258568020|ref|XP_002584754.1| spastin [Uncinocarpus reesii 1704]
 gi|237906200|gb|EEP80601.1| spastin [Uncinocarpus reesii 1704]
          Length = 943

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 688 PTRGMLLFGPPGTGKTMLARAVATESKSTFFSISATSLTS 727


>gi|228950614|ref|ZP_04112749.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228809089|gb|EEM55573.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 585

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 210 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 269

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 270 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENINLRAIATRTP-GFSG 320

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 321 A-DLENLLNEAALVAAR 336


>gi|225440141|ref|XP_002277745.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1132

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 28/117 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA +    +    FS                 + +  DS        
Sbjct: 499 VLLHGPPGTGKTSLAQLCICDAGVNLFSVNGAEIVSQYYGESEQALHEIFDSASQAAPAV 558

Query: 111 VLLEDIDLLD-----FNDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V ++++D +        +         L ++++ I + D  L++ A   P S    L
Sbjct: 559 VFIDELDAIAPARKDGGEELSHRIVATLLNLMDGISRTDGILVIAATNRPDSIEPAL 615


>gi|225387376|ref|ZP_03757140.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme DSM
            15981]
 gi|225046508|gb|EEG56754.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme DSM
            15981]
          Length = 1690

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 71/226 (31%)

Query: 67   VILVGPSGSGKSCLANIWSDKSRSTR--------------------------FSNIAKSL 100
             +LVGP G+GK+ LA   + ++                               S  A  +
Sbjct: 1230 ALLVGPPGTGKTLLARAVAGETARRVREMDPGCSKGRTAFIALAATDLLVGGLSTGADRV 1289

Query: 101  DSILIDTRKP------VLLEDIDLLD--------FND--TQLFHIINSIHQYDSSLLMTA 144
              + +  +K       + ++++D +          ++    L   ++      +  ++ A
Sbjct: 1290 RDLFLQAQKAEAASVVIFIDELDAVAKARGARGGADEVLIALLACMDGFSGNQNLFVLGA 1349

Query: 145  RTFP--------------VSWGVCLPDLCSR---LKAATVVKISLPDDDFLEKVI---VK 184
               P                  V LPD   R   L+     ++       L   +    K
Sbjct: 1350 TNRPEILDPALLRPGRFDRRIPVGLPDRKGREDILRLYAQKQLRPA----LAASLNQKEK 1405

Query: 185  MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LSRGM 228
                R     + +     +   RS   +   +  + N A  L+ G 
Sbjct: 1406 ELDARWAETAEAVIR---ETASRSYGASPAELANLVNEAGILAAGR 1448


>gi|260792398|ref|XP_002591202.1| hypothetical protein BRAFLDRAFT_62177 [Branchiostoma floridae]
 gi|229276405|gb|EEN47213.1| hypothetical protein BRAFLDRAFT_62177 [Branchiostoma floridae]
          Length = 431

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S +T F+  A +L S  +   + ++
Sbjct: 189 PVRGLLLFGPPGNGKTMLAKAVASESNATFFNMSASALTSKWVGESEKLV 238


>gi|254417700|ref|ZP_05031424.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
 gi|196183877|gb|EDX78853.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3]
          Length = 748

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 22/114 (19%)

Query: 65  RVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLD-------SILIDTRKPVL--LE 114
           R ++LVG +G+GK+ LA  I ++  R+        ++D          +     +   L 
Sbjct: 605 RNIVLVGGTGTGKTHLATAIIANVVRAGARGRYFNTVDLVNRLEEETRLGKAGALAAHLC 664

Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
            +D++  ++             LFH+I+ +++  +S+++T       W     D
Sbjct: 665 RLDVVVLDELGYLPFARSGGQLLFHLISKLYER-TSVIVTTNLAFGEWPTVFGD 717


>gi|194707130|gb|ACF87649.1| unknown [Zea mays]
          Length = 356

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++ E
Sbjct: 132 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRE 182


>gi|194742702|ref|XP_001953840.1| GF17034 [Drosophila ananassae]
 gi|229559924|sp|B3M301|SPAST_DROAN RecName: Full=Spastin
 gi|190626877|gb|EDV42401.1| GF17034 [Drosophila ananassae]
          Length = 770

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++
Sbjct: 527 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLV 576


>gi|162382774|ref|YP_896708.2| recombination factor protein RarA [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044812|ref|ZP_03112046.1| ATPase, AAA family [Bacillus cereus 03BB108]
 gi|225866381|ref|YP_002751759.1| ATPase, AAA family [Bacillus cereus 03BB102]
 gi|196024300|gb|EDX62973.1| ATPase, AAA family [Bacillus cereus 03BB108]
 gi|225786800|gb|ACO27017.1| ATPase, AAA family [Bacillus cereus 03BB102]
          Length = 426

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|154282971|ref|XP_001542281.1| cell division cycle protein 48 [Ajellomyces capsulatus NAm1]
 gi|150410461|gb|EDN05849.1| cell division cycle protein 48 [Ajellomyces capsulatus NAm1]
          Length = 806

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R + + GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 239 PPRGIFMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 298

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           +   + +++ID +                 QL  +++ +    + ++M A   P S    
Sbjct: 299 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNS---V 355

Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            P L  R  +    V I +PD     +++      + + + + +
Sbjct: 356 DPALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLAEDV 396


>gi|125596332|gb|EAZ36112.1| hypothetical protein OsJ_20424 [Oryza sativa Japonica Group]
          Length = 417

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++ E
Sbjct: 193 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRE 243


>gi|145592820|ref|YP_001157117.1| microtubule-severing ATPase [Salinispora tropica CNB-440]
 gi|145302157|gb|ABP52739.1| Microtubule-severing ATPase [Salinispora tropica CNB-440]
          Length = 750

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GP G GK+ L    +   R+   S     L S  +   +  + E        
Sbjct: 524 PPRGVLLYGPPGCGKTYLVTALAGSGRANVLSVKGAELLSKWVGESERAVRE-------- 575

Query: 123 DTQLFHIINSIHQYDSSLLM 142
                 +     +   +L+ 
Sbjct: 576 ------LFRRAREAAPTLVF 589



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 37/191 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI----------------LIDTRKP 110
           V+L GP+GSGKS L    + +  +         L ++                  D    
Sbjct: 275 VLLDGPAGSGKSALVRAVAAQVGARVRPVWGPELAALTNSAAAERLRAAAAAVRTDGPAV 334

Query: 111 VLLEDIDLLDFND-----TQLF-HIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLK 163
           +L+ D++ L         T +F  ++       ++++  T+R   V   +  PDL S   
Sbjct: 335 LLVTDVEALAPAAAPGPVTTVFRQVVAETVAAGAAVVCTTSRLDAVDPALRTPDLLS--- 391

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               V I LPD    ++ +  +   RQ+ + + +      R++         V   D  A
Sbjct: 392 --LRVSIPLPDAALRQEQLEVL--TRQVSLAEDV------RLDEVAARTPGFVAA-DLAA 440

Query: 224 LSRGMGITRSL 234
           L R  G+  +L
Sbjct: 441 LIREAGVRAAL 451


>gi|91088885|ref|XP_972389.1| PREDICTED: similar to Rpt1 CG1341-PA [Tribolium castaneum]
 gi|270012350|gb|EFA08798.1| hypothetical protein TcasGA2_TC006492 [Tribolium castaneum]
          Length = 434

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 268

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 329 DPALMRPGRLDRKVEFGLPDLEGR 352


>gi|126649271|ref|XP_001388307.1| 26s protease regulatory subunit 8 [Cryptosporidium parvum Iowa II]
 gi|32398680|emb|CAD98640.1| 26s protease regulatory subunit 8, probable [Cryptosporidium
           parvum]
 gi|126117401|gb|EAZ51501.1| 26s protease regulatory subunit 8, putative [Cryptosporidium parvum
           Iowa II]
          Length = 393

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 14/76 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E            
Sbjct: 174 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE------------ 221

Query: 127 FHIINSIHQYDSSLLM 142
             +     ++  SL+ 
Sbjct: 222 --LFVMAREHAPSLIF 235


>gi|115466876|ref|NP_001057037.1| Os06g0192600 [Oryza sativa Japonica Group]
 gi|226497700|ref|NP_001141915.1| hypothetical protein LOC100274064 [Zea mays]
 gi|226499298|ref|NP_001140694.1| hypothetical protein LOC100272769 [Zea mays]
 gi|242066762|ref|XP_002454670.1| hypothetical protein SORBIDRAFT_04g035230 [Sorghum bicolor]
 gi|28558165|sp|Q9FXT9|PRS7_ORYSJ RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName: Full=26S
           proteasome subunit 7; AltName: Full=Regulatory particle
           triple-A ATPase subunit 1
 gi|11094190|dbj|BAB17624.1| 26S proteasome regulatory particle triple-A ATPase subunit1 [Oryza
           sativa Japonica Group]
 gi|47497255|dbj|BAD19299.1| 26S proteasome regulatory particle triple-A ATPase subunit1 [Oryza
           sativa Japonica Group]
 gi|51090788|dbj|BAD35266.1| 26S protease regulatory subunit 7 [Oryza sativa Japonica Group]
 gi|51091125|dbj|BAD35822.1| 26S protease regulatory subunit 7 [Oryza sativa Japonica Group]
 gi|113595077|dbj|BAF18951.1| Os06g0192600 [Oryza sativa Japonica Group]
 gi|125541384|gb|EAY87779.1| hypothetical protein OsI_09197 [Oryza sativa Indica Group]
 gi|125554381|gb|EAY99986.1| hypothetical protein OsI_21990 [Oryza sativa Indica Group]
 gi|125583923|gb|EAZ24854.1| hypothetical protein OsJ_08636 [Oryza sativa Japonica Group]
 gi|194700610|gb|ACF84389.1| unknown [Zea mays]
 gi|194706436|gb|ACF87302.1| unknown [Zea mays]
 gi|215692740|dbj|BAG88160.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697824|dbj|BAG92017.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|241934501|gb|EES07646.1| hypothetical protein SORBIDRAFT_04g035230 [Sorghum bicolor]
          Length = 426

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++ E
Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRE 252


>gi|2492519|sp|Q41365|PRS7_SPIOL RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName: Full=26S
           proteasome subunit 7; AltName: Full=Regulatory particle
           triple-A ATPase subunit 1
 gi|1395191|dbj|BAA13021.1| 26S proteasome ATPase subunit [Spinacia oleracea]
          Length = 426

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++ E
Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRE 252


>gi|115449095|ref|NP_001048327.1| Os02g0784700 [Oryza sativa Japonica Group]
 gi|17298143|dbj|BAB78493.1| 26S proteasome regulatory particle triple-A ATPase subunit1b [Oryza
           sativa Japonica Group]
 gi|113537858|dbj|BAF10241.1| Os02g0784700 [Oryza sativa Japonica Group]
          Length = 235

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V+   GP G+GK+ LA   ++++ +     I   L    +     ++ E
Sbjct: 11  PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRE 61


>gi|325091041|gb|EGC44351.1| cell division control protein [Ajellomyces capsulatus H88]
          Length = 771

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 28/116 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R +++ GP G+GK+ +A   ++++ +  F                SN+ K+ +    +
Sbjct: 253 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 312

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150
           +   + +++ID +                 QL  +++ +    + ++M A   P S
Sbjct: 313 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNS 368


>gi|318041527|ref|ZP_07973483.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 654

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 73/219 (33%), Gaps = 58/219 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCL 276

Query: 111 VLLEDIDLLDFN------------DTQLFHII------------------NSIHQYDSSL 140
           + +++ID +               +  L  ++                  N     DS+L
Sbjct: 277 IFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRADVLDSAL 336

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195
           L   R       V +PD+  RL    V+K+      L DD  LE +  +        +  
Sbjct: 337 LRPGRFD-RQVQVDVPDIKGRLS---VLKVHSRDKKLADDVSLEAIARRTPGFSGADLAN 392

Query: 196 KL--AAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGIT 231
            L  AA +  R  +      ++ D +D  +A   G  +T
Sbjct: 393 LLNEAAILTARRRKDATSLAEIDDAVDRIIAGMEGKPLT 431


>gi|304382033|ref|ZP_07364585.1| replication-associated recombination protein A [Prevotella marshii
           DSM 16973]
 gi|304336787|gb|EFM03011.1| replication-associated recombination protein A [Prevotella marshii
           DSM 16973]
          Length = 430

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 31/178 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVL- 112
            IL GP G GK+ LA I + +     +               I ++          P+L 
Sbjct: 42  FILWGPPGVGKTTLAQIIAHQMEVPFYTLSAVTSGVKDVREVIERAKSGRFFSQGSPILF 101

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +     L+ A T   S+ V  P L SR     +  + 
Sbjct: 102 IDEIHRFSKSQQDSLL----GAVEQGVVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 153

Query: 172 LPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             + + L  ++ +        + R I + +  A  +++           +++ +   +
Sbjct: 154 SLEKEDLLALVERAITTDVELSKRSIELRQTGA--LLRYSGGDARKLLNILELVAEAS 209


>gi|299535693|ref|ZP_07049014.1| hypothetical protein BFZC1_06708 [Lysinibacillus fusiformis ZC1]
 gi|298728893|gb|EFI69447.1| hypothetical protein BFZC1_06708 [Lysinibacillus fusiformis ZC1]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 31/211 (14%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88
                  +   D +         ++I    +     ++L G  G GK+ +AN  +  S  
Sbjct: 12  PLTLDEIVGHQDFI--GPNTALYKMI---QNEHVPSMLLYGEPGIGKTSIANAIAGSSKL 66

Query: 89  -----RSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSS 139
                 +TR    ++   +    I  +  + L++I   +    DT L H+ N       S
Sbjct: 67  PFFALNATRAGKKDVEDIVQEARISGKVILFLDEIHRFNKLQQDTLLPHVEN------GS 120

Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQI-----F 192
           +++   T    +    P + SR     + ++     + L +++ K  AD  R +      
Sbjct: 121 IVLIGATTENPYHDVNPAIRSR--CGEIYQLKRLTKENLIELVEKALADERRGLGKYHFA 178

Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +       I          A  L++ +   +
Sbjct: 179 LTPSQIEQIAAAANGDARKALTLLESIYYAS 209


>gi|297681089|ref|XP_002818269.1| PREDICTED: peroxisome biogenesis factor 1-like [Pongo abelii]
          Length = 1259

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 20/78 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSILIDT 107
           +  ++L G  GSGKS LA     ++                R  R  NI K+L+    + 
Sbjct: 592 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEA 651

Query: 108 R----KPVLLEDIDLLDF 121
                  +LL+D+DL+  
Sbjct: 652 VWMQPSVILLDDLDLIAG 669



 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 853 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 900


>gi|298243635|ref|ZP_06967442.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297556689|gb|EFH90553.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 676

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           R V+LVGP G+GK+ LA   + ++    FS        +L+      + +  D  
Sbjct: 236 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEVLVGVGASRVRDLFDQA 290


>gi|288921153|ref|ZP_06415441.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
 gi|288347462|gb|EFC81751.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f]
          Length = 751

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 39/208 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 201 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKTNAPAI 260

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 261 IFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 320

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L   R     VV    PD    E ++      + I  D  L   I +R       A  
Sbjct: 321 --LRPGRFDRQIVV--DRPDLLGREAILKVHAKGKPIGPDVDLLT-IARRTP-GFTGA-D 373

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
           L + ++  AL       R +++ +L+E+
Sbjct: 374 LANVLNEAALLAARSDVRFISSALLEES 401


>gi|229494160|ref|ZP_04387923.1| cell division protease FtsH [Rhodococcus erythropolis SK121]
 gi|229318522|gb|EEN84380.1| cell division protease FtsH [Rhodococcus erythropolis SK121]
          Length = 850

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 19/81 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K+K +QL    P+         D          D L + A  QA+           R V+
Sbjct: 142 KSKAKQLTKDMPKTTFADVAGADEAVEELYEIKDFLQNPARYQALGAK------IPRGVL 195

Query: 69  LVGPSGSGKSCLANIWSDKSR 89
           L GP G+GK+ LA   + ++ 
Sbjct: 196 LYGPPGTGKTLLARAVAGEAG 216


>gi|221102479|ref|XP_002155686.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase,
           partial [Hydra magnipapillata]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + +  D  
Sbjct: 134 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 190


>gi|190346315|gb|EDK38368.2| hypothetical protein PGUG_02466 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 819

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+ V++  GP G GK+ LA   +++SR+   S
Sbjct: 543 PAGVLM-WGPPGCGKTLLAKAVANESRANFIS 573


>gi|134097030|ref|YP_001102691.1| transposase [Saccharopolyspora erythraea NRRL 2338]
 gi|134097352|ref|YP_001103013.1| transposase [Saccharopolyspora erythraea NRRL 2338]
 gi|134098404|ref|YP_001104065.1| transposase [Saccharopolyspora erythraea NRRL 2338]
 gi|134101621|ref|YP_001107282.1| transposase [Saccharopolyspora erythraea NRRL 2338]
 gi|133909653|emb|CAL99765.1| transposase, ISlxx1 [Saccharopolyspora erythraea NRRL 2338]
 gi|133909975|emb|CAM00087.1| putative IS21 family transposase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911027|emb|CAM01140.1| transposase, ISlxx1 [Saccharopolyspora erythraea NRRL 2338]
 gi|133914244|emb|CAM04357.1| transposase [Saccharopolyspora erythraea NRRL 2338]
          Length = 255

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 47/152 (30%)

Query: 30  FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL- 80
           F F     + RD        D +                      V+ +GP G+GK+ L 
Sbjct: 73  FDFDHQRSLKRDTITHLGTLDFIAGKEN-----------------VVFLGPPGTGKTHLS 115

Query: 81  --ANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND 123
               I + ++        A    + L +                   ++++++  + F  
Sbjct: 116 IGLGIRACQAGHRVSFATAAGWVARLAEASHAGRLQQELVKLGRIPLLIIDEVGYIPFEA 175

Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                 F ++ S     +SL++T+      WG
Sbjct: 176 EAANLFFQLV-SARYERASLIVTSNKPFGRWG 206


>gi|110433429|gb|ABG74396.1| DnaA [Rickettsia sp. BJ-90]
          Length = 199

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 42/133 (31%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DIRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121
           +   W     + SR   + +  K +   +   R                ++++DI  +  
Sbjct: 123 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D    + FH  N
Sbjct: 183 KDSTQEEFFHTFN 195


>gi|111225921|ref|YP_716715.1| cell division protein FtsH [Frankia alni ACN14a]
 gi|111153453|emb|CAJ65211.1| Cell division protein FtsH (ATP-dependent zinc-metallo protease)
           [Frankia alni ACN14a]
          Length = 739

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 40/205 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 194 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 253

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 254 IFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 313

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L   R     VV    PD    E ++      + I  D  +   I +R       A  
Sbjct: 314 --LRPGRFDRQIVV--DRPDLLGREAILRVHAKGKPIGPDADMMV-IARRTP-GFTGA-D 366

Query: 215 LVDKMDNLALSRGMGITRSLAAEVL 239
           L + ++  AL           +  L
Sbjct: 367 LANVLNEAALLAARS-NLKFISSAL 390


>gi|21223942|ref|NP_629721.1| cell division protein FtsH-like protein [Streptomyces coelicolor
           A3(2)]
 gi|3191980|emb|CAA19379.1| cell division protein FtsH homolog [Streptomyces coelicolor A3(2)]
          Length = 648

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+L GP G+GK+ LA   + ++    FS  A     +++      + E
Sbjct: 237 RGVLLTGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRE 286


>gi|46204752|ref|ZP_00049541.2| COG0465: ATP-dependent Zn proteases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 485

 Score = 38.6 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   + ++  T FS        + +      + +
Sbjct: 192 ILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMFVGVGAARVRD 239


>gi|330836020|ref|YP_004410661.1| thymidine kinase [Spirochaeta coccoides DSM 17374]
 gi|329747923|gb|AEC01279.1| thymidine kinase [Spirochaeta coccoides DSM 17374]
          Length = 384

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 63  PSRVVILVGPSGSGKSCL-ANIWSDKSRSTRFSNIAKSLDS 102
           P R V+L+GP GSGK+   A +W D + + + S++ + L +
Sbjct: 39  PGRRVLLIGPMGSGKTEFSARVWRDAAVAQKKSDVVRRLTA 79


>gi|328790361|ref|XP_395463.3| PREDICTED: ATP-binding cassette sub-family G member 4-like [Apis
          mellifera]
          Length = 611

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSD 86
          P R++ ++GPSG+GK+ L  I   
Sbjct: 73 PGRLMAIIGPSGAGKTTLLRIICS 96


>gi|320335120|ref|YP_004171831.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
 gi|319756409|gb|ADV68166.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
          Length = 623

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 47/205 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP GSGK+ LA   + ++    FS        + +                     
Sbjct: 193 LLLVGPPGSGKTLLAKAVAGEAGVPYFSISGSDFVEMFVGVGAARVRDLFEQAKKQTPCI 252

Query: 111 VLLEDIDLL------------DFNDTQLFHIINSIHQYDSS---LLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  ++  +  + ++   +++ A   P      L
Sbjct: 253 VFIDEIDAVGRKRGTGLNGGNDEREQTLNQLLVEMDGFGTTHDVIVLAATNRPDVLDAAL 312

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD    E ++      + +     LA  +V R    +V A
Sbjct: 313 ------LRPGRFDRQVVVDAPDVRGREMILKIHARKKPLDPTVDLA--LVARRTPGMVGA 364

Query: 213 EKLVDKMDNLALSRGM----GITRS 233
             L + ++  AL         IT  
Sbjct: 365 -DLENLLNEAALQAARNGRKRITTP 388


>gi|317139393|ref|XP_001817482.2| chromosome transmission fidelity protein 18 [Aspergillus oryzae
           RIB40]
          Length = 1049

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 373 KVMLLCGPPGLGKTTLAHVCAKQAG 397


>gi|312380668|gb|EFR26600.1| hypothetical protein AND_07217 [Anopheles darlingi]
          Length = 304

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 79  PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 138

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 139 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 198

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 199 DPALMRPGRLDRKVEFGLPDLEGR 222


>gi|303390889|ref|XP_003073675.1| 26S proteasome regulatory subunit 8 [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302822|gb|ADM12315.1| 26S proteasome regulatory subunit 8 [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 392

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  ++          L    I     ++ E
Sbjct: 172 VLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRE 219


>gi|302841358|ref|XP_002952224.1| hypothetical protein VOLCADRAFT_62257 [Volvox carteri f.
           nagariensis]
 gi|300262489|gb|EFJ46695.1| hypothetical protein VOLCADRAFT_62257 [Volvox carteri f.
           nagariensis]
          Length = 294

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S++T F+  A SL S  +   + ++
Sbjct: 52  PVRGILLYGPPGNGKTMLAKALAAQSQATFFNISASSLTSKWVGDGEKLV 101


>gi|224089933|ref|XP_002308870.1| predicted protein [Populus trichocarpa]
 gi|222854846|gb|EEE92393.1| predicted protein [Populus trichocarpa]
          Length = 1042

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 28/117 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA +    +    FS                 + K  DS        
Sbjct: 443 VLLHGPPGTGKTSLARLCVIDAGVNLFSVNGPEIFSQYYGESEQAMHKVFDSACQSAPAV 502

Query: 111 VLLEDIDLLD-----FNDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V ++++D +        +         L ++++ I + D  L++ A   P S    L
Sbjct: 503 VFIDELDAIAPARKDGGEELSQRMVATLLNLMDGIARTDGLLVIAATNRPDSIEPAL 559


>gi|255942225|ref|XP_002561881.1| Pc18g00340 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586614|emb|CAP94258.1| Pc18g00340 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 803

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 11  FVPDKQKNDQPKNKEEQLF-FSFPRCLGI-SRDDLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           +      +  P+ + + L    FP      SRDDLL           I    S P   ++
Sbjct: 34  YYGGTHYHQHPEPRPKPLSTVPFPHDPDFVSRDDLL---------AQIHERSSTPGSRIV 84

Query: 69  LVGPSGSGKSCLANIWSDKSR 89
           LVG  G GKS LA  +  + R
Sbjct: 85  LVGLGGVGKSRLAIEYCHRVR 105


>gi|196014821|ref|XP_002117269.1| 26S proteasome regulatory chain 4 [Trichoplax adhaerens]
 gi|190580234|gb|EDV20319.1| 26S proteasome regulatory chain 4 [Trichoplax adhaerens]
          Length = 413

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++ E
Sbjct: 190 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 241


>gi|163752933|ref|ZP_02160057.1| ATPase, AAA family protein [Kordia algicida OT-1]
 gi|161326665|gb|EDP97990.1| ATPase, AAA family protein [Kordia algicida OT-1]
          Length = 431

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 30/153 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             ++L GP G+GK+ LANI +  S                       AK  + +      
Sbjct: 46  PSLLLWGPPGTGKTTLANIIATTSDRPFYTLSAISSGVKEVREVIQRAKQDNGLFTTKNP 105

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L        +     L+ A T   S+ V +P L SR     V 
Sbjct: 106 ILFIDEIHRFSKSQQDSLL----GAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 157

Query: 169 KISLPDDDFLEKVIVKM------FADRQIFIDK 195
            ++    D L K++ +        A +QI + +
Sbjct: 158 VLNPFGKDDLVKLLQRAIKEDTELAKKQIILKE 190


>gi|119194717|ref|XP_001247962.1| hypothetical protein CIMG_01733 [Coccidioides immitis RS]
          Length = 734

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 479 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISATSLTS 518


>gi|85014485|ref|XP_955738.1| 26S proteasome regulatory subunit 8 [Encephalitozoon cuniculi
           GB-M1]
 gi|74697469|sp|Q8SQK0|PRS8_ENCCU RecName: Full=26S protease regulatory subunit 8 homolog
 gi|19171432|emb|CAD27157.1| 26S PROTEASOME REGULATORY SUBUNIT 8 [Encephalitozoon cuniculi
           GB-M1]
          Length = 453

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  ++          L    I     ++ E
Sbjct: 233 VLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRE 280


>gi|14289173|dbj|BAB59062.1| Pex1pL664P [Homo sapiens]
          Length = 1283

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 877 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 924



 Score = 37.1 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 20/78 (25%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSILIDT 107
           +  ++L G  GSGKS LA     ++                R  R  NI K+L+    + 
Sbjct: 592 NGALLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEA 651

Query: 108 R----KPVLLEDIDLLDF 121
                  VLL+D DL+  
Sbjct: 652 VWMQPSVVLLDDPDLIAG 669


>gi|67524919|ref|XP_660521.1| hypothetical protein AN2917.2 [Aspergillus nidulans FGSC A4]
 gi|40744312|gb|EAA63488.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
 gi|259486144|tpe|CBF83751.1| TPA: hypothetical protein similar to 26S proteasome regulatory
           subunit (Broad) [Aspergillus nidulans FGSC A4]
          Length = 443

 Score = 38.6 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 218 PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 269


>gi|324517522|gb|ADY46845.1| 26S protease regulatory subunit 8 [Ascaris suum]
          Length = 407

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 187 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 234


>gi|324515052|gb|ADY46074.1| 26S protease regulatory subunit 8 [Ascaris suum]
          Length = 465

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 245 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 292


>gi|321474885|gb|EFX85849.1| hypothetical protein DAPPUDRAFT_45426 [Daphnia pulex]
          Length = 517

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 37/217 (17%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD---- 86
             P CL +  D L+    + + V L++         VIL GPSG+GKS LA   +D    
Sbjct: 162 DLPACLAL--DTLIPLPILSRYVSLLNE-----HGRVILSGPSGTGKSYLARKLADYCIG 214

Query: 87  --------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDT 124
                               + R          L     D    ++LED+ L     +  
Sbjct: 215 KDDVPSTSTTVLKVDASSCKEVRQYLSHVCESLLTGSSSDVPTVIILEDLHLAPSLCDIF 274

Query: 125 QLFHIINSIHQYDSSLLMTARTFP-VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183
                  S+ +      +   T P     V L  L    +   +   + P    +++ + 
Sbjct: 275 APLSHFESVRENQKFPYLIGTTGPMAQSSVHLQ-LQFNFRWILLANHAEPVQGLIQRFLR 333

Query: 184 KMFADRQIFID--KKLAAYIVQRMERSLVFAEKLVDK 218
           +     Q+           +V+ + R      K ++ 
Sbjct: 334 RRLIQSQLLAKSRDGALERVVEWIPRCWAHLNKFLET 370


>gi|316972496|gb|EFV56173.1| 26S protease regulatory subunit 8 [Trichinella spiralis]
          Length = 349

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 129 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 176


>gi|311069237|ref|YP_003974160.1| recombination factor protein RarA [Bacillus atrophaeus 1942]
 gi|310869754|gb|ADP33229.1| recombination factor protein RarA [Bacillus atrophaeus 1942]
          Length = 422

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A   +  +        +      ++        +  +  ++L+++ 
Sbjct: 41  MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVH 100

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD              +    +L+ A T      +  P + SR     + ++     + 
Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPEL 153

Query: 178 LEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229
           +++ + +   D         + +D +   +               ++ ++   LS     
Sbjct: 154 IKQAMERALQDEHHGLGSYNVSVDDQAMDHFAHGCG---GDVRSALNALELAVLSTKESS 210

Query: 230 -----ITRSLAAEVLKE 241
                I+ + A E L++
Sbjct: 211 DGTIHISLATAEECLQK 227


>gi|309366885|emb|CAP20654.2| hypothetical protein CBG_23920 [Caenorhabditis briggsae AF16]
          Length = 268

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 48  VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 95


>gi|312071353|ref|XP_003138569.1| 26S protease regulatory subunit 8 [Loa loa]
 gi|307766267|gb|EFO25501.1| 26S protease regulatory subunit 8 [Loa loa]
          Length = 409

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 189 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 236


>gi|306822726|ref|ZP_07456104.1| crossover junction ATP-dependent DNA helicase RuvB [Bifidobacterium
           dentium ATCC 27679]
 gi|309801011|ref|ZP_07695143.1| Holliday junction DNA helicase RuvB [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554271|gb|EFM42180.1| crossover junction ATP-dependent DNA helicase RuvB [Bifidobacterium
           dentium ATCC 27679]
 gi|308222547|gb|EFO78827.1| Holliday junction DNA helicase RuvB [Bifidobacterium dentium
           JCVIHMP022]
          Length = 362

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 30/181 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P   ++L GP G GK+ LA I +++        S          +     +D  + + ++
Sbjct: 73  PPDHILLAGPPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFID 132

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD---------------- 157
           +I  L     +L +I     +     +M  +     S  + LP                 
Sbjct: 133 EIHRLPRAAEELLYI---AMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSP 189

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L +R      +     D+  LEK+I +  A   + +++  A  +  R   +   A +L+ 
Sbjct: 190 LRARFGFTAHLDFYPHDE--LEKLIERSSAVLGVLLEEGSAHQLAMRSRGTPRIANRLLR 247

Query: 218 K 218
           +
Sbjct: 248 R 248


>gi|326773865|ref|ZP_08233147.1| cell division protein [Actinomyces viscosus C505]
 gi|326636004|gb|EGE36908.1| cell division protein [Actinomyces viscosus C505]
          Length = 691

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    FS  A     + +      + +  D    N   +
Sbjct: 241 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEMFVGVGASRVRDLFDQAKENAPAI 300


>gi|300926530|ref|ZP_07142319.1| replication-associated recombination protein A [Escherichia coli MS
           182-1]
 gi|301325785|ref|ZP_07219233.1| replication-associated recombination protein A [Escherichia coli MS
           78-1]
 gi|300417447|gb|EFK00758.1| replication-associated recombination protein A [Escherichia coli MS
           182-1]
 gi|300847428|gb|EFK75188.1| replication-associated recombination protein A [Escherichia coli MS
           78-1]
 gi|323175486|gb|EFZ61081.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli
           1180]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 34  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 89

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 90  ILFVDEVHRFNKSQQD 105


>gi|283469980|emb|CAQ49191.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 557

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 16/74 (21%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            + + +VGPSGSGKS L  I                +  +       +  E++D+ + +D
Sbjct: 357 GKKIAIVGPSGSGKSTLLQI----------------MAGLYQLDSGSIRFENMDMFEIDD 400

Query: 124 TQLFHIINSIHQYD 137
              F  +N + Q  
Sbjct: 401 KDKFESLNVLLQSQ 414


>gi|258516173|ref|YP_003192395.1| AAA family ATPase, CDC48 subfamily [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779878|gb|ACV63772.1| AAA family ATPase, CDC48 subfamily [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 709

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ +A   ++++ +    
Sbjct: 213 PPKGVLLYGPPGTGKTLIARAVAEETDAHFIH 244


>gi|227879019|ref|ZP_03996914.1| ABC superfamily ATP binding cassette transporter ABC protein
           [Lactobacillus crispatus JV-V01]
 gi|256844237|ref|ZP_05549723.1| ABC transporter ATP-binding protein [Lactobacillus crispatus
           125-2-CHN]
 gi|262047868|ref|ZP_06020816.1| ABC transporter ATP-binding protein [Lactobacillus crispatus
           MV-3A-US]
 gi|293381119|ref|ZP_06627136.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus
           214-1]
 gi|312977009|ref|ZP_07788758.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus
           CTV-05]
 gi|227861390|gb|EEJ69014.1| ABC superfamily ATP binding cassette transporter ABC protein
           [Lactobacillus crispatus JV-V01]
 gi|256613315|gb|EEU18518.1| ABC transporter ATP-binding protein [Lactobacillus crispatus
           125-2-CHN]
 gi|260571812|gb|EEX28385.1| ABC transporter ATP-binding protein [Lactobacillus crispatus
           MV-3A-US]
 gi|290922331|gb|EFD99316.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus
           214-1]
 gi|310896337|gb|EFQ45402.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus
           CTV-05]
          Length = 450

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL------EDI 116
           P    +L+GP+G GKS L  I +       +   A  L  ++    +   +      E  
Sbjct: 26  PHGFSLLIGPTGCGKSTLLKIIAG-----LYPKYAGRLTGMVDLHGQKAAMMFQNAAEQF 80

Query: 117 DLLDFNDTQLFHIINSIHQYDSS 139
            +    +  +F + N        
Sbjct: 81  TMPTPREEIVFALENLQLDEGEY 103


>gi|224010559|ref|XP_002294237.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970254|gb|EED88592.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 2575

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 65   RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
            R ++  GP GSGK+ +A   + ++ +   +    ++D+        
Sbjct: 2398 RSILFHGPMGSGKTLMAQAIASETGALFINLSPSTIDNAFRGKEGA 2443


>gi|219127011|ref|XP_002183738.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404975|gb|EEC44920.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 403

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 184 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRE 231


>gi|241999600|ref|XP_002434443.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215497773|gb|EEC07267.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 737

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R  +L GP G GK+ LA+  + +
Sbjct: 194 PPRGFLLHGPPGCGKTLLAHAIAGE 218



 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   +++S     S     L ++ +   +  +
Sbjct: 496 ILLHGPPGCGKTLLAKAIANESGINFISVKGPELLNMYVGESERAV 541


>gi|195477378|ref|XP_002100183.1| GE16898 [Drosophila yakuba]
 gi|194187707|gb|EDX01291.1| GE16898 [Drosophila yakuba]
          Length = 479

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 63  PSRVVILVGPSGSGKSCLANI-WSDKSRSTRFSNIAKSL 100
           P R ++L GP GSGK+ LA   +S+      F NI  S+
Sbjct: 239 PWRSLLLHGPPGSGKTLLAKALYSETHGQVTFFNITASI 277


>gi|169830250|ref|YP_001716232.1| DNA polymerase III subunits gamma and tau [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637094|gb|ACA58600.1| DNA polymerase III, subunits gamma and tau [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 447

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 40/198 (20%)

Query: 70  VGPSGSGKSCLANIWSDKSRST---RFSNIAKSLDSILIDTRKPVLLEDIDLLD------ 120
            GP G+GK+  A + +     T         +    + I T   V + +ID         
Sbjct: 44  CGPRGTGKTTAAKVLAKAVNCTERDGAEPCGECASCVSIGTGSAVDVLEIDAASNRGVDE 103

Query: 121 ---FNDTQLFH-------------IINSIHQYDSSLLMTARTFPVS----WGVCLPD--- 157
                +   FH             +    ++  ++LL T    P           P    
Sbjct: 104 VRELRERVKFHPAAGRFKVYIIDEVHMLTNEAFNALLKTLEEPPPHVIFVLATTEPHKVP 163

Query: 158 --LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215
             + SR +     +I  PD   L   + ++ A   + ++  + A I +  + SL  A  +
Sbjct: 164 LTIISRCQRFDFRRIGRPD---LVSRLEEVAAQAGLAVESGVLALIARVADGSLRDALGI 220

Query: 216 VDKMDNLALSRGMGITRS 233
              +D  A   G  +T +
Sbjct: 221 ---LDQAAALGGNRVTLA 235


>gi|157780307|gb|ABV71710.1| ORF1 [Human parvovirus 4]
          Length = 663

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 58  SWPS--WPSRVVI-LVGPSGSGKSCLANIWSDKS 88
           +W    WP R  I L GP+ +GK+ LA   ++ S
Sbjct: 318 AWARGVWPKRRAIWLWGPASTGKTLLAAAIANLS 351


>gi|170581732|ref|XP_001895811.1| 26S protease regulatory subunit 8 [Brugia malayi]
 gi|158597104|gb|EDP35330.1| 26S protease regulatory subunit 8, putative [Brugia malayi]
          Length = 349

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 129 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 176


>gi|156407884|ref|XP_001641587.1| predicted protein [Nematostella vectensis]
 gi|156228726|gb|EDO49524.1| predicted protein [Nematostella vectensis]
          Length = 398

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 225


>gi|52842865|ref|YP_096664.1| ATPase N2B (nucleotide (GTP) binding protein) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629976|gb|AAU28717.1| ATPase N2B (nucleotide (GTP) binding protein) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 363

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 27/122 (22%)

Query: 57  DSWPSW----PSRVVILVGPSGSGKSCLA-----------------NIWSDKSRS--TRF 93
           DSW  W    P + + + GP G GK+ L                  + +  +  +   R 
Sbjct: 44  DSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRL 103

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----LFHIINSIHQYDSSLLMTARTFPV 149
                 L  I  +  K + L   D    +D      L  ++ ++H Y   L++++ T P 
Sbjct: 104 QGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTRPD 163

Query: 150 SW 151
             
Sbjct: 164 EL 165


>gi|23464657|ref|NP_695260.1| recombination factor protein RarA [Bifidobacterium longum NCC2705]
 gi|23325217|gb|AAN23896.1| widely conserved hypothetical protein with possible helicase and
           ATP binding domains [Bifidobacterium longum NCC2705]
          Length = 459

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 28/144 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA I + +S          ++  K +  +L    + ++         
Sbjct: 63  VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 116

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 117 RETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 172

Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192
           +   + D   E V   +  DR + 
Sbjct: 173 LESLEPDQLTELVQRALTDDRGLR 196


>gi|76879893|dbj|BAE45763.1| putative protein product of Nbla10058 [Homo sapiens]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 369 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403


>gi|268568260|ref|XP_002647983.1| Hypothetical protein CBG23920 [Caenorhabditis briggsae]
          Length = 269

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 49  VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 96


>gi|268561690|ref|XP_002646506.1| Hypothetical protein CBG20339 [Caenorhabditis briggsae]
 gi|268561700|ref|XP_002646508.1| Hypothetical protein CBG20343 [Caenorhabditis briggsae]
 gi|187023416|emb|CAP37377.1| hypothetical protein CBG_20339 [Caenorhabditis briggsae AF16]
 gi|187023418|emb|CAP37379.1| hypothetical protein CBG_20343 [Caenorhabditis briggsae AF16]
          Length = 415

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 195 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 242


>gi|17228756|ref|NP_485304.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17130608|dbj|BAB73218.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 613

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKSNAPCI 253

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 254 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 313

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD     +++      R   + K +    I +R       
Sbjct: 314 ------LRPGRFDRQVVVDRPDYAGRSEILKVHA--RGKTLAKDVDLDKIARRTP-GFTG 364

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 365 A-DLSNLLNEAAILAARRNLT 384


>gi|3193292|gb|AAC19276.1| T14P8.7 [Arabidopsis thaliana]
 gi|7269007|emb|CAB80740.1| AT4g02470 [Arabidopsis thaliana]
          Length = 371

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 45/164 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106
           P++ ++L GP G+GK+ LA   + ++ +   +    S+ S                    
Sbjct: 103 PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 162

Query: 107 TRKPVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144
               + ++++D +            +  + N              +  L++ A       
Sbjct: 163 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDL 222

Query: 145 -----RTFPVSWGVCLPDL--CSRLKAATVVKISLPDDDFLEKV 181
                R  P    V LPD    S++ +  + K  +  D  LE +
Sbjct: 223 DEAVIRRLPRRLMVNLPDATNRSKILSVILAKEEIAPDVDLEAI 266


>gi|7504439|pir||T33633 hypothetical protein F56F11.4 - Caenorhabditis elegans
          Length = 443

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 223 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 270


>gi|19112584|ref|NP_595792.1| AAA family ATPase Rix7 (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|74582013|sp|O14325|YB7A_SCHPO RecName: Full=Uncharacterized AAA domain-containing protein
           C16E9.10c
 gi|2467272|emb|CAB16902.1| AAA family ATPase Rix7 (predicted) [Schizosaccharomyces pombe]
          Length = 779

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   +++S++   S
Sbjct: 529 VLLWGPPGCGKTLLAKAVANESKANFIS 556



 Score = 36.3 bits (83), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P R V+L GP G GK+ LAN  +++      S  A S+
Sbjct: 207 PPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSI 244


>gi|330469259|ref|YP_004407002.1| ABC transporter-like protein [Verrucosispora maris AB-18-032]
 gi|328812230|gb|AEB46402.1| abc transporter related protein [Verrucosispora maris AB-18-032]
          Length = 614

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKS-------LDSILIDTRKPV 111
           P R V LVGP+GSGKS +A++        + + R   +            +  +  + P 
Sbjct: 373 PGRTVALVGPTGSGKSTIASLAVRLVDPLAGAVRIDGVDVRQLTADSLAANAALVAQVPF 432

Query: 112 LLED-------IDLLDFNDTQLFHIINSIHQYD 137
           + +D       +D    +D  ++  +       
Sbjct: 433 IFDDTIRANVSLDRPGIDDEVVWSALRLAEADG 465


>gi|315287521|gb|EFU46932.1| replication-associated recombination protein A [Escherichia coli MS
           110-3]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 34  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 89

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 90  ILFVDEVHRFNKSQQD 105


>gi|310829090|ref|YP_003961447.1| ATP-dependent Clp protease ATP-binding subunit clpX [Eubacterium
           limosum KIST612]
 gi|308740824|gb|ADO38484.1| ATP-dependent Clp protease ATP-binding subunit clpX [Eubacterium
           limosum KIST612]
          Length = 421

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 21/102 (20%)

Query: 33  PRCLGISRDDLLVH-----SAIEQAV--------RLIDSWPSWPSRV--VILVGPSGSGK 77
           PR +    D+ ++       A+  AV         ++DS      +   +IL+GP+GSGK
Sbjct: 63  PREIKAKLDEYVISQHRAKRALAVAVYNHYKRINAMLDSDDDVELQKSNIILIGPTGSGK 122

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + LA   +      R  ++  ++      T    + ED++ +
Sbjct: 123 TLLAQTLA------RVLDVPFAIADATSLTEAGYVGEDVENI 158


>gi|297808063|ref|XP_002871915.1| ATSUG1 [Arabidopsis lyrata subsp. lyrata]
 gi|297317752|gb|EFH48174.1| ATSUG1 [Arabidopsis lyrata subsp. lyrata]
          Length = 419

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 245


>gi|288904363|ref|YP_003429584.1| ATPase, AAA family [Streptococcus gallolyticus UCN34]
 gi|306830395|ref|ZP_07463565.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325977359|ref|YP_004287075.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288731088|emb|CBI12634.1| putative ATPase, AAA family [Streptococcus gallolyticus UCN34]
 gi|304427420|gb|EFM30522.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177287|emb|CBZ47331.1| AAA family ATPase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 422

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 25/176 (14%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKS-------LDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +   K     F+    S        +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++     D 
Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSTDD 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           ++  +    +D  R     + ID     +I               + +D   +S  
Sbjct: 155 IKTALQTALSDKERGFDFDVDIDADALDFIATTTN---GDLRSAFNSLDLAVMSTK 207


>gi|226471212|emb|CAX70687.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
          Length = 296

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 64/188 (34%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 71  PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELARSK 130

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 131 KACIIFFDEIDAVGGARFDDGLGGENEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 190

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + ++K +
Sbjct: 191 DPALVRPGRLDRKVEFGLPDLEGR---THIFKIHA----------------RSMSVEKDI 231

Query: 198 AAYIVQRM 205
              ++ R+
Sbjct: 232 RYELLARL 239


>gi|256072775|ref|XP_002572709.1| 26S protease regulatory subunit [Schistosoma mansoni]
 gi|238657873|emb|CAZ28941.1| 26S protease regulatory subunit, putative [Schistosoma mansoni]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 64/188 (34%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELARSK 267

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACIIFFDEIDAVGGARFDDGLGGENEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + ++K +
Sbjct: 328 DPALVRPGRLDRKVEFGLPDLEGR---THIFKIHA----------------RSMSVEKDI 368

Query: 198 AAYIVQRM 205
              ++ R+
Sbjct: 369 RYELLARL 376


>gi|194209436|ref|XP_001914838.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 2
           [Equus caballus]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 369 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403


>gi|169627637|ref|YP_001701286.1| cell division protein FtsH-like protein [Mycobacterium abscessus
           ATCC 19977]
 gi|169239604|emb|CAM60632.1| Cell division protein FtsH homolog [Mycobacterium abscessus]
          Length = 750

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 19/81 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K++ +QL    P+         D          D L + +  QA+           R V+
Sbjct: 148 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALGAK------IPRGVL 201

Query: 69  LVGPSGSGKSCLANIWSDKSR 89
           L GP G+GK+ LA   + ++ 
Sbjct: 202 LYGPPGTGKTLLARAVAGEAG 222


>gi|81362382|gb|ABB71587.1| 26S proteasome subunit ATPase 2 [Schistosoma mansoni]
          Length = 296

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 64/188 (34%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 71  PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELARSK 130

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 131 KACIIFFDEIDAVGGARFDDGLGGENEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 190

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + ++K +
Sbjct: 191 DPALVRPGRLDRKVEFGLPDLEGR---THIFKIHA----------------RSMSVEKDI 231

Query: 198 AAYIVQRM 205
              ++ R+
Sbjct: 232 RYELLARL 239


>gi|164424303|ref|XP_958860.2| hypothetical protein NCU07367 [Neurospora crassa OR74A]
 gi|157070458|gb|EAA29624.2| hypothetical protein NCU07367 [Neurospora crassa OR74A]
          Length = 390

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 67/198 (33%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 167 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 226

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 227 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 286

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +++    +   + I+  +           
Sbjct: 287 DPAL------LRAGRLDRKIEIPLPNEVGRLEILKIHAS--GVVIEGDI----------D 328

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 329 YESVVKMSDGLNGADLRN 346


>gi|126696352|ref|YP_001091238.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301]
 gi|126543395|gb|ABO17637.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301]
          Length = 584

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 45/152 (29%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GP G+GK+ LA   + +S     S  A     + +                     
Sbjct: 170 VLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVELFVGVGASRVRDLFSKAKEKSPCI 229

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +           ND       QL   ++        +++ A   P       
Sbjct: 230 IFIDEIDSIGRQRGSGIGGGNDEREQTLNQLLTELDGFADNSGIIVLAATNRPDILDAAL 289

Query: 152 ----------GVCLPDLCSRLKAATVVKISLP 173
                      V LPDL  R K  +V  +S P
Sbjct: 290 LRPGRFDRKIEVMLPDLDGRKKILSVHSLSKP 321


>gi|126308659|ref|XP_001376943.1| PREDICTED: similar to mSUG1 protein [Monodelphis domestica]
          Length = 451

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 231 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 278


>gi|125596557|gb|EAZ36337.1| hypothetical protein OsJ_20663 [Oryza sativa Japonica Group]
          Length = 937

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ LA   + ++ +   S
Sbjct: 681 PCKGILLFGPPGTGKTLLAKALATEAGANFIS 712


>gi|126340424|ref|XP_001364875.1| PREDICTED: hypothetical protein [Monodelphis domestica]
 gi|20532410|sp|P46471|PRS7_MOUSE RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2; AltName:
           Full=Protein MSS1
 gi|12836770|dbj|BAB23807.1| unnamed protein product [Mus musculus]
 gi|13529470|gb|AAH05462.1| Psmc2 protein [Mus musculus]
 gi|74214370|dbj|BAE40423.1| unnamed protein product [Mus musculus]
 gi|148671245|gb|EDL03192.1| proteasome (prosome, macropain) 26S subunit, ATPase 2, isoform
           CRA_e [Mus musculus]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 369 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403


>gi|114566955|ref|YP_754109.1| Holliday junction DNA helicase RuvB [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|122318041|sp|Q0AX16|RUVB_SYNWW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|114337890|gb|ABI68738.1| Holliday junction DNA helicase subunit RuvB [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 344

 Score = 38.6 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 76/206 (36%), Gaps = 37/206 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I +++           +++           LE  ++L  ++   
Sbjct: 57  VLLSGPPGLGKTTLASIIANEVGKPIRKTSGPAIERPGDLAAILTNLEPGEVLFIDEI-- 114

Query: 127 FHIINSIHQ--------------------YDSSL--------LMTARTFPVSWGVCLPDL 158
            H +N   +                       +L        L+ A T P      L D 
Sbjct: 115 -HRLNRNVEEIMYPAMEDYVIDIIIGKGPAARTLRLDLPPFTLIGATTRPGLLSSPLRD- 172

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
               +     ++       L ++I++     +I +DK+ A  I  R   +   A +L+ +
Sbjct: 173 ----RFGISCRLDFYTPLELSEIILRAARILEISLDKEGATEIAGRSRGTPRVANRLLRR 228

Query: 219 MDNLALSRGM-GITRSLAAEVLKETQ 243
           + + AL +G   I  SLA   L+  +
Sbjct: 229 VRDYALVKGNGNIDFSLAKWALEMLE 254


>gi|328885330|emb|CCA58569.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712]
          Length = 611

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+L GP G+GK+ LA   + ++    FS  A     +++      + E
Sbjct: 203 RGVLLAGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRE 252


>gi|313891077|ref|ZP_07824696.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120440|gb|EFR43560.1| ATPase, AAA family [Streptococcus pseudoporcinus SPIN 20026]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 25/176 (14%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKS-------LDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +   K     F+    +        +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDTKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNEA 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           ++K I    +D  R     I +D     +I               + +D   +S  
Sbjct: 155 IKKAIATAISDKERGYSFEITLDSDALDFIATATN---GDLRSAYNSLDLAVMSTK 207


>gi|297273395|ref|XP_002800612.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 4 [Macaca
           mulatta]
          Length = 416

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 196 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 243


>gi|226471210|emb|CAX70686.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
          Length = 271

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 64/188 (34%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 46  PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELARSK 105

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 106 KACIIFFDEIDAVGGARFDDGLGGENEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 165

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + ++K +
Sbjct: 166 DPALVRPGRLDRKVEFGLPDLEGR---THIFKIHA----------------RSMSVEKDI 206

Query: 198 AAYIVQRM 205
              ++ R+
Sbjct: 207 RYELLARL 214


>gi|256784957|ref|ZP_05523388.1| cell division protein FtsH-like protein [Streptomyces lividans
           TK24]
 gi|289768848|ref|ZP_06528226.1| cell division protein [Streptomyces lividans TK24]
 gi|289699047|gb|EFD66476.1| cell division protein [Streptomyces lividans TK24]
          Length = 648

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+L GP G+GK+ LA   + ++    FS  A     +++      + E
Sbjct: 237 RGVLLTGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRE 286


>gi|240104120|ref|YP_002960429.1| replication factor C large subunit [Thermococcus gammatolerans EJ3]
 gi|239911674|gb|ACS34565.1| Replication factor C, large subunit (rfcL) [Thermococcus
           gammatolerans EJ3]
          Length = 507

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 68/185 (36%), Gaps = 29/185 (15%)

Query: 48  AIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS---------- 94
           AIEQ    +++W          +IL GP G GK+      +++                 
Sbjct: 27  AIEQVRAWVEAWLHGNPPKKKALILAGPPGVGKTTTVYALANEYGFEVIELNASDERTYE 86

Query: 95  -----NIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFP 148
                  A     IL   RK + L++ D ++ +   ++  +I+        ++M+A    
Sbjct: 87  KIERYVQAAYTMDILGKRRKLIFLDEADNIEPSGAREIAKLIDRARN---PIIMSAN--- 140

Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
             W V   ++ +R   A +V+        + K +V++       + K++   I +R    
Sbjct: 141 HYWEV-PKEIRNR---AQIVEYKRLTQRDIIKALVRILKREGKTVPKEILYEIAKRANGD 196

Query: 209 LVFAE 213
           L  A 
Sbjct: 197 LRAAI 201


>gi|238880466|gb|EEQ44104.1| 26S protease regulatory subunit 4 [Candida albicans WO-1]
          Length = 441

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 219 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 268


>gi|254172455|ref|ZP_04879130.1| proteasome-activating nucleotidase [Thermococcus sp. AM4]
 gi|214033384|gb|EEB74211.1| proteasome-activating nucleotidase [Thermococcus sp. AM4]
          Length = 397

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G GK+ +A   ++   +T    +   L    I     ++ E
Sbjct: 171 PPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHE 222


>gi|167388905|ref|XP_001738738.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165897880|gb|EDR24926.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 505

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + ++L GP G+GK+ +    + +S +T F+  A +L S  I   + ++
Sbjct: 262 PPKGLLLFGPPGTGKTMIGKAIASQSNATFFNISASALTSKWIGEGEKLV 311


>gi|225442805|ref|XP_002285273.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743378|emb|CBI36245.3| unnamed protein product [Vitis vinifera]
          Length = 417

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 196 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 243


>gi|218531682|ref|YP_002422498.1| hypothetical protein Mchl_3751 [Methylobacterium chloromethanicum
           CM4]
 gi|218523985|gb|ACK84570.1| conserved hypothetical protein [Methylobacterium chloromethanicum
           CM4]
          Length = 499

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFND 123
            +++ G SGSGKS L     ++S       I         L +    V++E     D N+
Sbjct: 26  RLLVQGNSGSGKSHLLRRLLEQSAGLVQQAIIDPEGDFVTLAERYGHVVIE----ADGNE 81

Query: 124 TQLFHIINSIHQYDSSLLMT 143
            +L  I   + ++  S++++
Sbjct: 82  AELLRIAARVREHRVSVVLS 101


>gi|145494081|ref|XP_001433035.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400151|emb|CAK65638.1| unnamed protein product [Paramecium tetraurelia]
          Length = 387

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
           V+L GP G+GK+ LA   +  +  T        L  +
Sbjct: 173 VLLYGPPGTGKTLLARAIAHHTDCTFIRVSGSELKEL 209


>gi|157369339|ref|YP_001477328.1| ATP-dependent protease ATP-binding subunit ClpX [Serratia
           proteamaculans 568]
 gi|167009020|sp|A8GAR0|CLPX_SERP5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157321103|gb|ABV40200.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia
           proteamaculans 568]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55
           ++++E+     P ++++  P           P  +    DD ++    A   +  AV   
Sbjct: 46  DIIREEIKEVSPHRERSALPT----------PHEIRHHLDDYVIGQEPAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      RF ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|97046721|sp|P0C1D3|CTF18_EMENI RecName: Full=Chromosome transmission fidelity protein 18
 gi|259480278|tpe|CBF71262.1| TPA: Chromosome transmission fidelity protein 18
           [Source:UniProtKB/Swiss-Prot;Acc:P0C1D3] [Aspergillus
           nidulans FGSC A4]
          Length = 993

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 315 KVLLLCGPPGLGKTTLAHVCARQAG 339


>gi|50310995|ref|XP_455520.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644656|emb|CAG98228.1| KLLA0F09691p [Kluyveromyces lactis]
          Length = 505

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 27/106 (25%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVG 71
               +     +N + QL            +DL +  +                  +++VG
Sbjct: 96  FTSTEAEQGMRNLQRQLSLELDNDD----EDLELSKSN-----------------LMVVG 134

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           PSGSGK+ LA      +   R  ++  ++      T+   + ED++
Sbjct: 135 PSGSGKTLLA------TTLARMLDVPIAITDCTQLTQAGYIGEDVE 174


>gi|15241241|ref|NP_197500.1| 26S proteasome AAA-ATPase subunit, putative [Arabidopsis thaliana]
 gi|75165109|sp|Q94BQ2|PRS8B_ARATH RecName: Full=26S protease regulatory subunit 8 homolog B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT6b; AltName:
           Full=26S proteasome subunit 8 homolog B; AltName:
           Full=Regulatory particle triple-A ATPase subunit 6b
 gi|14532682|gb|AAK64142.1| putative 26S proteasome AAA-ATPase subunit RPT6a [Arabidopsis
           thaliana]
 gi|19310807|gb|AAL85134.1| putative 26S proteasome AAA-ATPase subunit RPT6a [Arabidopsis
           thaliana]
 gi|21593097|gb|AAM65046.1| 26S proteasome AAA-ATPase subunit RPT6a-like protein [Arabidopsis
           thaliana]
 gi|110740531|dbj|BAE98371.1| 26S proteasome AAA-ATPase subunit RPT6a - like protein [Arabidopsis
           thaliana]
 gi|332005395|gb|AED92778.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 419

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 245


>gi|290057|gb|AAA33254.1| HIV1 TAT-binding protein [Dictyostelium discoideum]
          Length = 389

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 168 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 215


>gi|67467034|ref|XP_649637.1| ATPase, Vps4 oligomerisation domain containing protein [Entamoeba
           histolytica HM-1:IMSS]
 gi|56466121|gb|EAL44253.1| ATPase, Vps4 oligomerisation domain containing protein [Entamoeba
           histolytica HM-1:IMSS]
          Length = 505

 Score = 38.6 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + ++L GP G+GK+ +    + +S +T F+  A +L S  I   + ++
Sbjct: 262 PPKGLLLFGPPGTGKTMIGKAIASQSNATFFNISASALTSKWIGEGEKLV 311


>gi|332085738|gb|EGI90902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           dysenteriae 155-74]
          Length = 424

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSW--------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +             ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELSKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|326477677|gb|EGE01687.1| ABC transporter [Trichophyton equinum CBS 127.97]
          Length = 624

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 21/27 (77%)

Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTR 92
          +++L+GPSGSGK+ L N+ + ++ S R
Sbjct: 56 LMVLMGPSGSGKTTLLNVLAGRANSLR 82


>gi|326473215|gb|EGD97224.1| ABC transporter [Trichophyton tonsurans CBS 112818]
          Length = 629

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 21/27 (77%)

Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTR 92
          +++L+GPSGSGK+ L N+ + ++ S R
Sbjct: 56 LMVLMGPSGSGKTTLLNVLAGRANSLR 82


>gi|323337619|gb|EGA78864.1| Rpt6p [Saccharomyces cerevisiae Vin13]
          Length = 285

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 65  VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE 112


>gi|316975096|gb|EFV58555.1| protease regulatory subunit S10B [Trichinella spiralis]
          Length = 401

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A + + +         A ++    I     ++ E
Sbjct: 181 PPKGVLLYGPPGTGKTLIARLVASQIDCLFLQASATTITDSYIGEAAKMVRE 232


>gi|303325891|ref|ZP_07356334.1| ABC transporter, ATP-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863807|gb|EFL86738.1| ABC transporter, ATP-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 536

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 11/76 (14%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--------SRVVILVG 71
           +P+ K ++L FS+P        + +V +A + A    D    WP           + LVG
Sbjct: 302 RPEPKRKELNFSWPEAPH---SEKIVLAAADLAFHFPDGKSMWPPLTFTLYRGGRIALVG 358

Query: 72  PSGSGKSCLANIWSDK 87
            +G GKS L  I + +
Sbjct: 359 HNGCGKSTLLRILAGQ 374


>gi|302761752|ref|XP_002964298.1| hypothetical protein SELMODRAFT_166381 [Selaginella moellendorffii]
 gi|300168027|gb|EFJ34631.1| hypothetical protein SELMODRAFT_166381 [Selaginella moellendorffii]
          Length = 600

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ +   +
Sbjct: 330 PCRGLLLFGPPGTGKTMLAKAVATEAGANFIN 361


>gi|302764360|ref|XP_002965601.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii]
 gi|300166415|gb|EFJ33021.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii]
          Length = 858

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 69/196 (35%), Gaps = 30/196 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P R V+LVGP G+GK+ LA   + ++     S  A     + +                 
Sbjct: 401 PPRGVLLVGPPGTGKTLLAKAVAGEASVPFISCSASEFVELYVGMGASRVRELFARAKKN 460

Query: 111 ----VLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMT-------ART-----FPVSWGV 153
               V +++ID +    D +L  + N   +   + L+T       A T           V
Sbjct: 461 APSIVFIDEIDAVAKGRDGRLRSVSNDEREQTLNQLLTELDGFESASTVIVIGATNRADV 520

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
             P L    +   +V +  PD    E+++      + + + K +   +V         A 
Sbjct: 521 LDPALRRPGRFDRIVMVEPPDRQGREEILNVHVTKKGLPLSKDVNLNVVAGATSGFTGA- 579

Query: 214 KLVDKMDNLALSRGMG 229
            L + ++  AL  G  
Sbjct: 580 DLANLVNEAALLAGRE 595


>gi|302657989|ref|XP_003020705.1| ABC transporter, putative [Trichophyton verrucosum HKI 0517]
 gi|291184562|gb|EFE40087.1| ABC transporter, putative [Trichophyton verrucosum HKI 0517]
          Length = 620

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 21/27 (77%)

Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTR 92
          +++L+GPSGSGK+ L N+ + ++ S R
Sbjct: 56 LMVLMGPSGSGKTTLLNVLAGRANSLR 82


>gi|302502921|ref|XP_003013421.1| ABC transporter, putative [Arthroderma benhamiae CBS 112371]
 gi|291176985|gb|EFE32781.1| ABC transporter, putative [Arthroderma benhamiae CBS 112371]
          Length = 646

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 21/27 (77%)

Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTR 92
          +++L+GPSGSGK+ L N+ + ++ S R
Sbjct: 56 LMVLMGPSGSGKTTLLNVLAGRANSLR 82


>gi|256271329|gb|EEU06395.1| Rpt6p [Saccharomyces cerevisiae JAY291]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE 232


>gi|294893028|ref|XP_002774316.1| AAA ATPase, putative [Perkinsus marinus ATCC 50983]
 gi|239879610|gb|EER06132.1| AAA ATPase, putative [Perkinsus marinus ATCC 50983]
          Length = 711

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 20/97 (20%)

Query: 41  DDLLVHS-AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           +DL++   +  +    +   P  P  V+ L GP GSGK+ LA   + +     F   A  
Sbjct: 180 EDLIIRPISHREVYENLGVSP--PVGVL-LHGPPGSGKTMLATAIAGELGCAWFKVSAPE 236

Query: 100 LDSILIDTRKP----------------VLLEDIDLLD 120
           + S +    +                 VL+++ID + 
Sbjct: 237 IVSGVSGESEATLRSLFATAVSNAPCIVLIDEIDAIC 273



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           V+L GP G GK+ LA   ++ S +   S     L
Sbjct: 475 VLLFGPPGCGKTLLAKAVANASNANFISVKGPEL 508


>gi|254586757|ref|XP_002498946.1| ZYRO0G22330p [Zygosaccharomyces rouxii]
 gi|238941840|emb|CAR30013.1| ZYRO0G22330p [Zygosaccharomyces rouxii]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE 232


>gi|255718959|ref|XP_002555760.1| KLTH0G16698p [Lachancea thermotolerans]
 gi|238937144|emb|CAR25323.1| KLTH0G16698p [Lachancea thermotolerans]
          Length = 455

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 233 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 282


>gi|296811000|ref|XP_002845838.1| ABC transporter family protein [Arthroderma otae CBS 113480]
 gi|238843226|gb|EEQ32888.1| ABC transporter family protein [Arthroderma otae CBS 113480]
          Length = 621

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 21/27 (77%)

Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTR 92
          +++L+GPSGSGK+ L N+ + ++ S R
Sbjct: 56 LMVLMGPSGSGKTTLLNVLAGRANSLR 82


>gi|194209614|ref|XP_001493415.2| PREDICTED: peroxisome biogenesis factor 1 [Equus caballus]
          Length = 1283

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA + + +S     S     L S  I   +  + +
Sbjct: 877 VLLYGPPGTGKTLLAGVIARESGMNFISVKGPELLSKYIGASEKAVRD 924


>gi|218438533|ref|YP_002376862.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7424]
 gi|226725455|sp|B7K9M6|RUVB_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|218171261|gb|ACK69994.1| Holliday junction DNA helicase RuvB [Cyanothece sp. PCC 7424]
          Length = 366

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 35/204 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L GP G GK+ +A I + +         A +L+     T   + L+  D+L  ++   
Sbjct: 85  LLLYGPPGLGKTTMALILAAEMGVNCKITAAPALERPRDITGLLINLKPGDILFIDEI-- 142

Query: 127 FHIINSIHQ-------YDSSLLMTA--------RTFPVSWGVCL------------PDLC 159
            H +N + +        D  L +T         R+ P+S    L            P L 
Sbjct: 143 -HRLNRMSEELLYPAMEDQRLDITTGKGKSAKIRSIPLS-PFTLIGATTKIGALTSP-LR 199

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            R      ++    D+  L  V+++        I ++ A  I +R   +   A +L+ ++
Sbjct: 200 DRFGLIQRLRFYEVDE--LCLVVLRTAKILNAKIKEEGALEIARRSRGTPRIANRLLKRV 257

Query: 220 DNLALSRG-MGITRSLAAEVLKET 242
            + AL +    IT +LAAE L + 
Sbjct: 258 RDYALVKKIESITEALAAEALDKL 281


>gi|171186450|ref|YP_001795369.1| replication factor C large subunit [Thermoproteus neutrophilus
           V24Sta]
 gi|226739140|sp|B1YC69|RFCL_THENV RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit
 gi|170935662|gb|ACB40923.1| AAA ATPase central domain protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 422

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 72/196 (36%), Gaps = 33/196 (16%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD----------------SILIDT 107
           ++ V+L GP G GK+ + +  + + R       A  +                 S+    
Sbjct: 56  AKAVLLAGPPGIGKTTVVHALAREIRYELIELNASDIRTGERIKLVVGRGLKESSLFGYE 115

Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTF--PVSWGVCLPDLCSRLK 163
            K VL +++D L    ++  L  I+  +      ++MTA     P      L D+     
Sbjct: 116 GKLVLFDEVDGLHVKEDEGGLEAIVEIVETAKVPIVMTANNPYDPKFRP--LRDI----- 168

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
            + VV +    ++ + +V+ ++        +++    I +    SL      ++ +  + 
Sbjct: 169 -SLVVNLKRLSEEEVVEVLRRICTAEGAKCEEEALRSIAKS---SLGDLRAAINDL-QMY 223

Query: 224 LSRGMG-ITRSLAAEV 238
           LS G   +T      V
Sbjct: 224 LSGGRKTLTVDDIKRV 239


>gi|163735743|ref|ZP_02143173.1| alpha-glucoside transporter, ATP-binding protein AglK [Roseobacter
           litoralis Och 149]
 gi|161390996|gb|EDQ15335.1| alpha-glucoside transporter, ATP-binding protein AglK [Roseobacter
           litoralis Och 149]
          Length = 365

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 28/161 (17%)

Query: 66  VVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
           +++ VGPSG GKS L  + +  +K  +       + ++ +    R   ++       F  
Sbjct: 32  LIVFVGPSGCGKSTLLRMIAGLEKITAGELLIDGQRMNDVPPAQRGIAMV-------FQS 84

Query: 124 TQLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182
             L+ H+  ++    +  L  A+  P           SR  AA V+++    D   + + 
Sbjct: 85  YALYPHM--TVRDNMAFALKLAKKSPSEIDAA----VSR--AAKVLQLDEYLDRLPKALS 136

Query: 183 ----VKMFADRQIFIDKKLAAYI----VQRMERSLVFAEKL 215
                ++   R I  D K+  Y+    +  ++ SL  A ++
Sbjct: 137 GGQRQRVAIGRSIVRDPKV--YLFDEPLSNLDASLRVATRI 175


>gi|156845849|ref|XP_001645814.1| hypothetical protein Kpol_1010p74 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116482|gb|EDO17956.1| hypothetical protein Kpol_1010p74 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 437

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 264


>gi|156843550|ref|XP_001644842.1| hypothetical protein Kpol_1041p42 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115493|gb|EDO16984.1| hypothetical protein Kpol_1041p42 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 403

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 182 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE 229


>gi|156063576|ref|XP_001597710.1| hypothetical protein SS1G_01906 [Sclerotinia sclerotiorum 1980]
 gi|154697240|gb|EDN96978.1| hypothetical protein SS1G_01906 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1006

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           ++++L GP G GK+ LA++ + ++ 
Sbjct: 304 KILMLTGPPGLGKTTLAHVCARQAG 328


>gi|154296999|ref|XP_001548928.1| hypothetical protein BC1G_12588 [Botryotinia fuckeliana B05.10]
 gi|150843115|gb|EDN18308.1| hypothetical protein BC1G_12588 [Botryotinia fuckeliana B05.10]
          Length = 483

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           ++++L GP G GK+ LA++ + ++ 
Sbjct: 405 KILLLTGPPGLGKTTLAHVCARQAG 429


>gi|116694069|ref|YP_728280.1| ABC-type transporter, ATPase component [Ralstonia eutropha H16]
 gi|113528568|emb|CAJ94915.1| ABC-type transporter, ATPase component [Ralstonia eutropha H16]
          Length = 364

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 66  VVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           ++ L+GPSG GK+ L  I +  ++  + R    A+ L  +    R   +L
Sbjct: 40  LLCLLGPSGCGKTTLLRIIAGLEREDAGRIHAGARELTGLPPQARDYGIL 89


>gi|50302545|ref|XP_451208.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640339|emb|CAH02796.1| KLLA0A04752p [Kluyveromyces lactis]
          Length = 404

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 184 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE 231


>gi|4591|emb|CAA47023.1| sug1 [Saccharomyces cerevisiae]
 gi|1195528|gb|AAB35417.1| 26S protease subunit S8=SUG1 homolog [human, erythrocytes, Peptide,
           405 aa]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE 232


>gi|45201053|ref|NP_986623.1| AGL043Cp [Ashbya gossypii ATCC 10895]
 gi|44985836|gb|AAS54447.1| AGL043Cp [Ashbya gossypii ATCC 10895]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 184 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE 231


>gi|50286501|ref|XP_445679.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524984|emb|CAG58590.1| unnamed protein product [Candida glabrata]
          Length = 400

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 178 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE 225


>gi|6321390|ref|NP_011467.1| Rpt6p [Saccharomyces cerevisiae S288c]
 gi|1709801|sp|Q01939|PRS8_YEAST RecName: Full=26S protease regulatory subunit 8 homolog; AltName:
           Full=Protein CIM3; AltName: Full=Protein SUG1; AltName:
           Full=Tat-binding protein TBY1
 gi|172878|gb|AAA35138.1| Tat-binding protein [Saccharomyces cerevisiae]
 gi|1322539|emb|CAA96750.1| SUG1 [Saccharomyces cerevisiae]
 gi|51013721|gb|AAT93154.1| YGL048C [Saccharomyces cerevisiae]
 gi|151943244|gb|EDN61557.1| ATPase [Saccharomyces cerevisiae YJM789]
 gi|190407011|gb|EDV10278.1| 26S protease regulatory subunit 8 [Saccharomyces cerevisiae
           RM11-1a]
 gi|207345311|gb|EDZ72174.1| YGL048Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146455|emb|CAY79712.1| Rpt6p [Saccharomyces cerevisiae EC1118]
 gi|285812153|tpg|DAA08053.1| TPA: Rpt6p [Saccharomyces cerevisiae S288c]
 gi|323309082|gb|EGA62310.1| Rpt6p [Saccharomyces cerevisiae FostersO]
 gi|323333434|gb|EGA74828.1| Rpt6p [Saccharomyces cerevisiae AWRI796]
 gi|323348524|gb|EGA82768.1| Rpt6p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354945|gb|EGA86776.1| Rpt6p [Saccharomyces cerevisiae VL3]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE 232


>gi|228885|prf||1813279A SUG1 gene
          Length = 400

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE 232


>gi|326478821|gb|EGE02831.1| AAA-type ATPase [Trichophyton equinum CBS 127.97]
          Length = 774

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 502 PGLLLYGPPGTGKTMLAKAVARESGATVLE 531


>gi|320164654|gb|EFW41553.1| proteasome 26S subunit [Capsaspora owczarzaki ATCC 30864]
          Length = 391

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    ++    ++ S+    I     ++ E
Sbjct: 168 PPKGVLLYGPPGTGKTLLARAVASNIEASFLKVVSSSIVDKYIGESARLIRE 219


>gi|315045474|ref|XP_003172112.1| 26S protease regulatory subunit S10B [Arthroderma gypseum CBS
           118893]
 gi|311342498|gb|EFR01701.1| 26S protease regulatory subunit S10B [Arthroderma gypseum CBS
           118893]
          Length = 393

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 229

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 230 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 289

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +V+    +   + ++ ++           
Sbjct: 290 DPAL------LRAGRLDRKIEIPLPNEVGRLEVLKIHAS--GVSMEGEI----------D 331

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 332 FETIVKMSDGLNGADLRN 349


>gi|310821962|ref|YP_003954320.1| ATP-dependent metalloprotease ftsh [Stigmatella aurantiaca DW4/3-1]
 gi|309395034|gb|ADO72493.1| ATP-dependent metalloprotease FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 683

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 49/206 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 237 VLLVGPPGTGKTLLARAVAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFGQATAKAPCI 296

Query: 111 VLLEDIDLLDF----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + ++++D +            ++      QL   ++        +++ A   P      L
Sbjct: 297 IFIDELDAIGKSRNSGVAGGHDEREQTLNQLLAEMDGFDGRTGLIILAATNRPEILDSAL 356

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 ++       V +  PD    E+V+      RQ+ +   +    +  R       
Sbjct: 357 ------MRPGRFDRQVLVDRPDKRGRERVLE--IHSRQVKLGPDVDLKGLAARTP-GFAG 407

Query: 212 AEKLVDKMDNLALSRGMG----ITRS 233
           A  L + ++  AL         +TR+
Sbjct: 408 A-DLANVVNEAALLAARRNRDAVTRA 432


>gi|300817006|ref|ZP_07097225.1| replication-associated recombination protein A [Escherichia coli MS
           107-1]
 gi|301022877|ref|ZP_07186710.1| replication-associated recombination protein A [Escherichia coli MS
           69-1]
 gi|309795299|ref|ZP_07689717.1| replication-associated recombination protein A [Escherichia coli MS
           145-7]
 gi|300397339|gb|EFJ80877.1| replication-associated recombination protein A [Escherichia coli MS
           69-1]
 gi|300530358|gb|EFK51420.1| replication-associated recombination protein A [Escherichia coli MS
           107-1]
 gi|308120949|gb|EFO58211.1| replication-associated recombination protein A [Escherichia coli MS
           145-7]
 gi|332091064|gb|EGI96154.1| ATPase family associated with various cellular activities family
           protein [Shigella dysenteriae 155-74]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 34  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 89

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 90  ILFVDEVHRFNKSQQD 105


>gi|294011479|ref|YP_003544939.1| putative ATPase [Sphingobium japonicum UT26S]
 gi|292674809|dbj|BAI96327.1| putative ATPase [Sphingobium japonicum UT26S]
          Length = 436

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ ++ + +D     RF  I+     +    +     +D        T L
Sbjct: 56  IILWGPPGTGKTTISRLLADAVG-MRFEPISAVFSGVADLKKVFAAAKD-HARRGEKTLL 113

Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172
           F    H  N   Q            +L+      P          L SR   A V+ +  
Sbjct: 114 FVDEIHRFNRAQQDGFLPFVEDGTVTLVGATTENPSFELNAA---LLSR---AQVLILRR 167

Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219
            D   LE+++ +  A   R + +D      ++   +    F    V+ +
Sbjct: 168 LDASALEQLLDRAEALTGRPLPLDAAAREALLASADGDGRFLLNQVETL 216


>gi|289606626|emb|CBI61102.1| unnamed protein product [Sordaria macrospora]
          Length = 196

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 64  SRVVILVGPSGSGKS----CLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
              +++ G  G+GK+     L   I + +    R        D +L      +   D+D 
Sbjct: 45  EGFIVITGDPGTGKTTLLGHLMRTIDAARLNVIRIVTTQIEADDLLRLVASGL---DVDH 101

Query: 119 LDFNDTQLFH-----IINSIHQYDSSLLM 142
                 QL       + N       +LL+
Sbjct: 102 DGLTKAQLLSGIERGLHNVARSGRRTLLV 130


>gi|301095569|ref|XP_002896884.1| chromosome transmission fidelity protein, putative [Phytophthora
           infestans T30-4]
 gi|262108531|gb|EEY66583.1| chromosome transmission fidelity protein, putative [Phytophthora
           infestans T30-4]
          Length = 881

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           ++++++ GP G+GK+ LANI +  +        A    +  +   K +
Sbjct: 302 NKIILICGPPGAGKTTLANIVARHAGYNPIEVNASDDRTAPVLRNKII 349


>gi|260944488|ref|XP_002616542.1| hypothetical protein CLUG_03783 [Clavispora lusitaniae ATCC 42720]
 gi|238850191|gb|EEQ39655.1| hypothetical protein CLUG_03783 [Clavispora lusitaniae ATCC 42720]
          Length = 434

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 212 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 261


>gi|257068552|ref|YP_003154807.1| putative ATPase [Brachybacterium faecium DSM 4810]
 gi|256559370|gb|ACU85217.1| predicted ATPase [Brachybacterium faecium DSM 4810]
          Length = 353

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 23/154 (14%)

Query: 11  FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILV 70
           +VPD  +    +   +Q   +F   L   R   L           +    S P+R + + 
Sbjct: 35  YVPDPAR--PSQEDAKQRVTAFAAELAAPRGGFL---------AKLRRRKSGPARGIYMD 83

Query: 71  GPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDSI----------LIDTRKPVLLEDIDLL 119
           G  G GK+ L  +++        +    +  D +          L+     V +++ +L 
Sbjct: 84  GGFGVGKTHLLTSLFHAVPGHRVYGTFVEYTDLVGALGFQKAVDLLGESVLVCIDEFELD 143

Query: 120 DFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
           D  DT L   +I  +     +++ T+ T P + G
Sbjct: 144 DPGDTLLMTRLIRELSDRGVAIVATSNTLPDALG 177


>gi|291457478|ref|ZP_06596868.1| replication-associated recombination protein A [Bifidobacterium
           breve DSM 20213]
 gi|291381313|gb|EFE88831.1| replication-associated recombination protein A [Bifidobacterium
           breve DSM 20213]
          Length = 459

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 28/144 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA I + +S          ++  K +  +L    + ++         
Sbjct: 63  VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 116

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ V  P L SR   + VVK
Sbjct: 117 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSVIKP-LLSR---SVVVK 172

Query: 170 ISLPDDDFLEKVIVKMFAD-RQIF 192
           +   + + L +++ +  AD R + 
Sbjct: 173 LESLEPNQLTELVQRALADERGLK 196


>gi|126697424|gb|ABO26669.1| psmc6 protein [Haliotis discus discus]
          Length = 272

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   + +        ++ ++    I     ++ E
Sbjct: 171 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARLIRE 222


>gi|260830274|ref|XP_002610086.1| hypothetical protein BRAFLDRAFT_125661 [Branchiostoma floridae]
 gi|229295449|gb|EEN66096.1| hypothetical protein BRAFLDRAFT_125661 [Branchiostoma floridae]
          Length = 854

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
             V+L GP G GK+ LA   +++S     S     L ++ +   +  +
Sbjct: 606 PGVLLAGPPGCGKTLLAKAIANESGVNFISVKGPELLNMYVGESERAV 653



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R  +L GP G GK+ LAN  + +
Sbjct: 272 PPRGFLLHGPPGCGKTLLANAIAGE 296


>gi|167773595|gb|ABZ92232.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2 [synthetic
           construct]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 369 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403


>gi|167378436|ref|XP_001734800.1| 26S protease regulatory subunit [Entamoeba dispar SAW760]
 gi|165903522|gb|EDR29030.1| 26S protease regulatory subunit, putative [Entamoeba dispar SAW760]
          Length = 398

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGTELVQKYIGEGSRMVRE 225


>gi|167378685|ref|XP_001734886.1| 26S protease regulatory subunit [Entamoeba dispar SAW760]
 gi|165903356|gb|EDR28931.1| 26S protease regulatory subunit, putative [Entamoeba dispar SAW760]
          Length = 376

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 156 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGTELVQKYIGEGSRMVRE 203


>gi|126660834|ref|ZP_01731928.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
 gi|126617885|gb|EAZ88660.1| cell division protein; FtsH [Cyanothece sp. CCY0110]
          Length = 628

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 45/214 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 268

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 328

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       V +  PD     +++     ++++  D      I +R       A
Sbjct: 329 ------MRPGRFDRQVIVDAPDFKGRLEILEVHARNKKLAPDVS-IESIARRTP-GFSGA 380

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             L + ++  A+       R  A  +L+     D
Sbjct: 381 -DLANLLNEAAILTARR--RKEAITLLEIDDAVD 411


>gi|126131656|ref|XP_001382353.1| 26S protease regulatory subunit 4-like protein [Scheffersomyces
           stipitis CBS 6054]
 gi|126094178|gb|ABN64324.1| 26S protease regulatory subunit 4-like protein [Scheffersomyces
           stipitis CBS 6054]
          Length = 434

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 212 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 261


>gi|118121359|ref|XP_428317.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 546

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 250 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 306


>gi|50290061|ref|XP_447462.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526772|emb|CAG60399.1| unnamed protein product [Candida glabrata]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 211 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 260


>gi|41055738|ref|NP_957260.1| 26S protease regulatory subunit 7 [Danio rerio]
 gi|31419198|gb|AAH53187.1| Proteasome (prosome, macropain) 26S subunit, ATPase 2 [Danio rerio]
 gi|56207862|emb|CAI20760.1| novel protein similar to vertebrate proteasome (prosome, macropain)
           26S subunit, ATPase, 2 (PSMC2) (zgc:63995) [Danio rerio]
 gi|182890060|gb|AAI65223.1| Psmc2 protein [Danio rerio]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 369 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403


>gi|10435339|dbj|BAB14567.1| unnamed protein product [Homo sapiens]
          Length = 254

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P + ++L GP G+GK+ +    + +S +T FS  A SL S
Sbjct: 13  PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 52


>gi|18402995|ref|NP_564563.1| FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|17865766|sp|Q39102|FTSH1_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 1,
           chloroplastic; Short=AtFTSH1; Flags: Precursor
 gi|5734790|gb|AAD50055.1|AC007980_20 ATP-dependent metalloprotease [Arabidopsis thaliana]
 gi|20268684|gb|AAM14046.1| putative chloroplast FtsH protease [Arabidopsis thaliana]
 gi|21689847|gb|AAM67567.1| putative chloroplast FtsH protease [Arabidopsis thaliana]
 gi|332194407|gb|AEE32528.1| cell division protease ftsH-1 [Arabidopsis thaliana]
          Length = 716

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 299 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 345


>gi|191167587|ref|ZP_03029398.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B7A]
 gi|190902348|gb|EDV62086.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B7A]
          Length = 447

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|67465840|ref|XP_649078.1| 26S protease regulatory subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56465447|gb|EAL43703.1| 26S protease regulatory subunit, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 398

 Score = 38.6 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGTELVQKYIGEGSRMVRE 225


>gi|328772400|gb|EGF82438.1| hypothetical protein BATDEDRAFT_86245 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 1299

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 36 LGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
             S  +L    +   A R + +  + + P +V+ ++G SGSGK+ L ++ + + ++ + 
Sbjct: 22 ESFSWWNLFTGQS--AAFRALSNVSFNAAPGQVIAIMGASGSGKTTLLHMLAGRIQNAKV 79

Query: 94 SN 95
            
Sbjct: 80 DG 81


>gi|300311231|ref|YP_003775323.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1]
 gi|300074016|gb|ADJ63415.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1]
          Length = 434

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 71/192 (36%), Gaps = 27/192 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           +I  GP G GK+ LA + +                     + + ++  ++ +     + +
Sbjct: 50  MIFWGPPGVGKTTLARLTATAFECEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFV 109

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   + +            +      + A T   S+ V    L SR   A V  +   
Sbjct: 110 DEIHRFNKSQQDALLPY---AESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSL 162

Query: 174 DDDFLEKVIVKMFADRQ---IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            D+ L++++ K   D+    +  D++    I+   +        L+++ D  A + G   
Sbjct: 163 TDEELKQLL-KRAQDKALGDLQFDQQATDTIIGYADGDARRFLNLLEQTDTAARTTG--- 218

Query: 231 TRSLAAEVLKET 242
           TR + AE L+  
Sbjct: 219 TRLVTAEFLQNA 230


>gi|290988944|ref|XP_002677130.1| predicted protein [Naegleria gruberi]
 gi|284090736|gb|EFC44386.1| predicted protein [Naegleria gruberi]
          Length = 452

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   +  + +T    +   L    +     ++ E
Sbjct: 230 PPKGVILYGEPGTGKTLLAKAVAHHTSATFLRVVGSELIQKYLGEGPKLVRE 281


>gi|269215585|ref|ZP_06159439.1| protein RecA [Slackia exigua ATCC 700122]
 gi|269131072|gb|EEZ62147.1| protein RecA [Slackia exigua ATCC 700122]
          Length = 349

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            R++ + GP  SGK+ LA     ++++          +  L  T    L  DID +  + 
Sbjct: 66  GRIIEIYGPESSGKTTLALQIIAEAQAAGGIVAFIDAEHALDPTYAARLGVDIDEVLISQ 125


>gi|320009150|gb|ADW04000.1| ATP-binding protein [Streptomyces flavogriseus ATCC 33331]
          Length = 490

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 42/199 (21%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLG----------ISRDDLLVHSAIEQAVRLI 56
            +   VPD ++    +    QL    P              +   +         A+  +
Sbjct: 123 GWEVKVPDPREVCWRRT---QLTGELPMPARDTEGKGIDQLLRLTNFATADTESLALAWL 179

Query: 57  --DSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
                PS P     L GP G+GKS     L  I    +   R +   +      +     
Sbjct: 180 IGCLGPSVPVPAPFLTGPQGAGKSTAGRMLVRIIEGMTGDLRRAPRDEENLITAVAAGWV 239

Query: 111 VLLEDIDLLDFN---------------DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVC 154
             L+++  L  +                  LF   + +       LL+T     +  GV 
Sbjct: 240 TALDNLSHLAPDLSDLMCCIVTGAESIKRALFSDGDVVRSRYRRPLLLTG----IDVGVI 295

Query: 155 LPDLCSRLKAATVVKISLP 173
            PDL  RL     +++  P
Sbjct: 296 RPDLAERL---LPLRLERP 311


>gi|294931118|ref|XP_002779763.1| 26S protease regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239889384|gb|EER11558.1| 26S protease regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 432

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 211 PPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRE 262


>gi|225556242|gb|EEH04531.1| ATPase family AAA domain-containing protein [Ajellomyces capsulatus
           G186AR]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 148 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 178


>gi|225452592|ref|XP_002280981.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 515

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF------- 93
           DDL+  S  E+    I    +W    + L GP G+GKS + +  ++      +       
Sbjct: 262 DDLIAFSKAEEFYARIGR--AWKRGYL-LYGPPGTGKSTMISAMANLLGYDVYDLELTSV 318

Query: 94  -SNIAKSLDSILIDTRKPVLLEDID 117
             N       I I +R  +++EDID
Sbjct: 319 KDNTELRRLLIEISSRSIIVIEDID 343


>gi|225434315|ref|XP_002276130.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 573

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   ++ + +     +        +    P ++ D+  L 
Sbjct: 353 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL-GEGPRMVRDVFRLA 409


>gi|222085712|ref|YP_002544242.1| ATPase associated with chromosome architecture/replication protein
           [Agrobacterium radiobacter K84]
 gi|221723160|gb|ACM26316.1| ATPase associated with chromosome architecture/replication protein
           [Agrobacterium radiobacter K84]
          Length = 438

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 31/188 (16%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111
           R+I+   S     +I  GP G+GK+ +A + S ++     + S I   +  +        
Sbjct: 47  RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFETA- 102

Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157
               +  +D   T LF    H  N           +  + +L+  T              
Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215
           L SR   A V+     D++ L +++ +        + + +   A +++  +        L
Sbjct: 157 LLSR---ARVLTFRSHDEESLAELLSRAEKTEGKPLPLTEDARASLIRMADGDGRSVLTL 213

Query: 216 VDKMDNLA 223
            +++   A
Sbjct: 214 AEEVWRAA 221


>gi|154272137|ref|XP_001536921.1| ATPase family AAA domain-containing protein 1 [Ajellomyces
           capsulatus NAm1]
 gi|150408908|gb|EDN04364.1| ATPase family AAA domain-containing protein 1 [Ajellomyces
           capsulatus NAm1]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 148 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 178


>gi|146310566|ref|YP_001175640.1| ATP-dependent protease ATP-binding subunit ClpX [Enterobacter sp.
           638]
 gi|167009015|sp|A4W7A9|CLPX_ENT38 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145317442|gb|ABP59589.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           sp. 638]
          Length = 424

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55
           ++++E+     P ++++  P           P  +    DD ++    A   +  AV   
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEPAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|68476325|ref|XP_717812.1| likely proteasome regulatory particle ATPase Rpt2p [Candida
           albicans SC5314]
 gi|68476514|ref|XP_717718.1| likely proteasome regulatory particle ATPase Rpt2p [Candida
           albicans SC5314]
 gi|46439443|gb|EAK98761.1| likely proteasome regulatory particle ATPase Rpt2p [Candida
           albicans SC5314]
 gi|46439544|gb|EAK98861.1| likely proteasome regulatory particle ATPase Rpt2p [Candida
           albicans SC5314]
          Length = 465

 Score = 38.6 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 219 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 268


>gi|330507349|ref|YP_004383777.1| AAA family ATPase [Methanosaeta concilii GP-6]
 gi|328928157|gb|AEB67959.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6]
          Length = 737

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + V+L GP G+GK+ +A   +++S +   S               + L  I  + +K 
Sbjct: 225 PPKGVLLYGPPGTGKTLIAKAVANESGANFISIAGPEIMSKYYGESEQRLREIFEEAQKS 284

Query: 111 ----VLLEDIDLLD 120
               + +++ID + 
Sbjct: 285 APSIIFIDEIDSIA 298



 Score = 36.7 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ +A   ++++ +   S
Sbjct: 497 PPKGILLYGPPGTGKTMIAQAVANETNANFIS 528


>gi|308505464|ref|XP_003114915.1| hypothetical protein CRE_28272 [Caenorhabditis remanei]
 gi|308259097|gb|EFP03050.1| hypothetical protein CRE_28272 [Caenorhabditis remanei]
          Length = 409

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 189 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 236


>gi|308463093|ref|XP_003093824.1| CRE-RPT-6 protein [Caenorhabditis remanei]
 gi|308249314|gb|EFO93266.1| CRE-RPT-6 protein [Caenorhabditis remanei]
          Length = 408

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 193 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 240


>gi|302760953|ref|XP_002963899.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii]
 gi|300169167|gb|EFJ35770.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii]
          Length = 765

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   + ++    FS        +        + +
Sbjct: 255 VLLHGPPGTGKTLLARAIAGEAGLPFFSVGGAEFVEMYAGVAAARVQD 302


>gi|295103325|emb|CBL00869.1| phage DNA replication protein (predicted replicative helicase
           loader) [Faecalibacterium prausnitzii SL3/3]
          Length = 280

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 22/128 (17%)

Query: 51  QAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDKSR-----------STRFSNIA 97
            A   ++ W    +  +  +L G  G+GKS LA   ++              +   +++A
Sbjct: 112 TARFYVEHWEDMKAGNIGYLLWGSVGTGKSYLAGCIANALMEQEISVKMTNFAAVLNDLA 171

Query: 98  KSLDSIL-----IDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFPV 149
            + +        +     ++L+D  +    +  L  + N I   ++ +  L++T      
Sbjct: 172 ATFEGRNEYISKLCRYPLLILDDFGMERGTEYGLEQVYNVIDSRYRSEKPLIVTTNLSLD 231

Query: 150 SWGVCLPD 157
                 PD
Sbjct: 232 ELN-NPPD 238


>gi|294658879|ref|XP_461219.2| DEHA2F20086p [Debaryomyces hansenii CBS767]
 gi|202953457|emb|CAG89607.2| DEHA2F20086p [Debaryomyces hansenii]
          Length = 366

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 41/139 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------DSILIDTRKP 110
           P  V+   GP G GK+ LA   + +S +   S    ++            D+I     K 
Sbjct: 134 PKGVLF-YGPPGCGKTMLAKAIAKESGAFFLSIRMSTIMDKWYGESNKIVDAIFSLANKL 192

Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTA---------- 144
               V +++ID    +              +   + + +      ++M A          
Sbjct: 193 QPCIVFIDEIDSFLRDRSSNDHEVSSIIKAEFMTLWDGLMSNGRIMVMGATNRREDIDQA 252

Query: 145 --RTFPVSWGVCLPDLCSR 161
             R  P  + +  PD   R
Sbjct: 253 FMRRLPKQFPIGRPDASQR 271


>gi|146417537|ref|XP_001484737.1| hypothetical protein PGUG_02466 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 819

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P+ V++  GP G GK+ LA   +++SR+   S
Sbjct: 543 PAGVLM-WGPPGCGKTLLAKAVANESRANFIS 573


>gi|167033528|ref|YP_001668759.1| carbohydrate kinase [Pseudomonas putida GB-1]
 gi|166860016|gb|ABY98423.1| carbohydrate kinase, thermoresistant glucokinase family
           [Pseudomonas putida GB-1]
          Length = 179

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P   ++++G +G GKSC+    + +S        A      +      + L+D D   +
Sbjct: 4   PLSAIVVMGVAGCGKSCIGAAIAARSGGRLIEGDAFHPAENIRKMSAGIPLDDSDRAGW 62


>gi|56756889|gb|AAW26616.1| SJCHGC09284 protein [Schistosoma japonicum]
 gi|226471214|emb|CAX70688.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
 gi|226488012|emb|CAX75671.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
 gi|226488014|emb|CAX75672.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Schistosoma
           japonicum]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 64/188 (34%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELARSK 267

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACIIFFDEIDAVGGARFDDGLGGENEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + ++K +
Sbjct: 328 DPALVRPGRLDRKVEFGLPDLEGR---THIFKIHA----------------RSMSVEKDI 368

Query: 198 AAYIVQRM 205
              ++ R+
Sbjct: 369 RYELLARL 376


>gi|25144281|ref|NP_741098.1| hypothetical protein F56F11.4 [Caenorhabditis elegans]
 gi|21328360|gb|AAM48537.1|AF099922_5 Hypothetical protein F56F11.4b [Caenorhabditis elegans]
          Length = 432

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 212 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 259


>gi|26990129|ref|NP_745554.1| carbohydrate kinase, thermoresistant glucokinase family
           [Pseudomonas putida KT2440]
 gi|24985063|gb|AAN69018.1|AE016534_1 gluconokinase [Pseudomonas putida KT2440]
          Length = 179

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P   ++++G +G GKSC+    + +S        A      +      + L+D D   +
Sbjct: 4   PLSAIVVMGVAGCGKSCIGAAIAARSGGRLIEGDAFHPAENIRKMSAGIPLDDSDRAGW 62


>gi|268571361|ref|XP_002641019.1| C. briggsae CBR-RPT-6 protein [Caenorhabditis briggsae]
 gi|187030024|emb|CAP30811.1| CBR-RPT-6 protein [Caenorhabditis briggsae AF16]
          Length = 417

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 197 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 244


>gi|322799608|gb|EFZ20880.1| hypothetical protein SINV_01171 [Solenopsis invicta]
          Length = 434

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 268

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 329 DPALMRPGRLDRKIEFGLPDLEGR 352


>gi|322374037|ref|ZP_08048571.1| ATPase, AAA family [Streptococcus sp. C150]
 gi|321277003|gb|EFX54074.1| ATPase, AAA family [Streptococcus sp. C150]
          Length = 422

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  ++               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +    +++ A T    + V  P + SR     + ++    +  
Sbjct: 102 RLDKAKQDFLLP---LLENGKIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNTD 154

Query: 178 LEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++  I  +  DR+      + +D     +I       L  A   +D
Sbjct: 155 IKVAIQGVLEDRERGFDFDVQLDDDALDFIATATNGDLRSAYNSLD 200


>gi|320102131|ref|YP_004177722.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Isosphaera
           pallida ATCC 43644]
 gi|319749413|gb|ADV61173.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Isosphaera
           pallida ATCC 43644]
          Length = 478

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +     +L
Sbjct: 138 ILLIGPTGSGKTLLARTLA------RVLNVPFAIGDATTLTEAGYVGEDVENILL---KL 188

Query: 127 FHIINSIHQYDSS 139
            H  N   +    
Sbjct: 189 LHAANFDLEAAQR 201


>gi|307109493|gb|EFN57731.1| hypothetical protein CHLNCDRAFT_56078 [Chlorella variabilis]
          Length = 399

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P   V+L GP G+GK+ LA   +    +     +A  +    I     V+ E
Sbjct: 169 PPTGVLLYGPPGTGKTLLAKAIASNIEANFLKVVASGVVDKYIGESARVIRE 220


>gi|296209885|ref|XP_002751728.1| PREDICTED: 26S protease regulatory subunit 7 [Callithrix jacchus]
          Length = 435

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 210 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 270 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 330 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 370

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 371 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 405


>gi|296120718|ref|YP_003628496.1| type II secretory pathway component ExeA (predicted ATPase)-like
           protein [Planctomyces limnophilus DSM 3776]
 gi|296013058|gb|ADG66297.1| Type II secretory pathway component ExeA (predicted ATPase)-like
           protein [Planctomyces limnophilus DSM 3776]
          Length = 277

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%)

Query: 24  KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83
            E+ L    P  L ++ DD       E+A+  +       + V +L G SG+GK+ L ++
Sbjct: 3   PEDSLTRPSPFRLTLAPDDFFASVEHEEALSRLWYLAEQRAPVGVLSGISGTGKTFLLHV 62

Query: 84  WSDKSRSTRFSNIAKSLDSI 103
            + +        I     S+
Sbjct: 63  LARELSQVGVEAILLDATSL 82


>gi|241895371|ref|ZP_04782667.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Weissella paramesenteroides ATCC 33313]
 gi|241871345|gb|EER75096.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Weissella paramesenteroides ATCC 33313]
          Length = 561

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 54/208 (25%)

Query: 63  PSRVVILVGPSGSGKSCLA--------NIWSDKSRSTRFSNIAKSLDSILIDTRKPV--L 112
           P   V+L GPSGSGK+ L         + +  +       N     D+ + +    +  +
Sbjct: 31  PGERVLLSGPSGSGKTTLGQLLNGLIPHAYQGEVTGNIKINGHDIKDASIFERSFDIGTV 90

Query: 113 LEDIDL----LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           L+D D     L   +   F + N         L+T         V         + A  +
Sbjct: 91  LQDTDTQFVGLTVAEDIAFALEND--HVGHDELLT--------KVK--------QWAQTL 132

Query: 169 KISLPDDDFLEKV-------IVKMFADRQIFIDKKLAAYIVQRMERSLVFA-----EKLV 216
           ++    D+ L+           +  A   + ID  L   ++   +  L         +++
Sbjct: 133 QL----DELLKAAPQELSGGQKQRVAMAGVLIDDSLI--LL--FDEPLASLDPASGHRML 184

Query: 217 DKMDNLALSRGMGITRSLAAEVLKETQQ 244
             +D   L     +T  +    L++  Q
Sbjct: 185 ALLDE--LQEKYHLTVIMIEHRLEDVLQ 210


>gi|229071908|ref|ZP_04205119.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185]
 gi|228711204|gb|EEL63168.1| hypothetical protein bcere0025_40750 [Bacillus cereus F65185]
          Length = 476

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 90  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 149

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 150 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 198

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D +   + +   D++       + +  +   +        +  A   ++         
Sbjct: 199 TEDDILIGLKRALEDKEKGLGEYAVTVTDEALHHFANASGGDMRSAYNALELAVLSSFTT 258

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 259 DDQAA-----EITLEIAEECLQK 276


>gi|237842335|ref|XP_002370465.1| 26S proteasome AAA-ATPase subunit RPT1, putative [Toxoplasma gondii
           ME49]
 gi|211968129|gb|EEB03325.1| 26S proteasome AAA-ATPase subunit RPT1, putative [Toxoplasma gondii
           ME49]
 gi|221502597|gb|EEE28317.1| 26S proteasome AAA-ATPase subunit RPT1, putative [Toxoplasma gondii
           VEG]
          Length = 476

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 248 PPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRE 299


>gi|195425933|ref|XP_002061212.1| GK10264 [Drosophila willistoni]
 gi|194157297|gb|EDW72198.1| GK10264 [Drosophila willistoni]
          Length = 503

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           P R ++L GP GSGK+ LA +   +++S  
Sbjct: 260 PWRSLLLHGPPGSGKTLLAKVLYAETQSRV 289


>gi|164688546|ref|ZP_02212574.1| hypothetical protein CLOBAR_02191 [Clostridium bartlettii DSM
          16795]
 gi|164602959|gb|EDQ96424.1| hypothetical protein CLOBAR_02191 [Clostridium bartlettii DSM
          16795]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 65 RVVILVGPSGSGKSCLANIWSDKSR 89
            +IL GP G+GK+ LANI ++ + 
Sbjct: 39 PNMILYGPPGTGKTTLANIIANVTG 63


>gi|164427356|ref|XP_956468.2| hypothetical protein NCU03359 [Neurospora crassa OR74A]
 gi|157071709|gb|EAA27232.2| hypothetical protein NCU03359 [Neurospora crassa OR74A]
          Length = 828

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 21/152 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK-----PVLLEDIDLLDF 121
           V+LVGP G+GK+ LA   + ++    F+      + + +                     
Sbjct: 404 VLLVGPPGTGKTLLARAVAGEAGVPFFNMSGSEFEEVYVGVGAKRVRDLFAAAKAKAPSI 463

Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWG--------------VCLPDLCSRLKAATV 167
              QL   ++   Q    +++ A  FP S                V LPD+  R+     
Sbjct: 464 TLNQLLTELDGFEQNSGVIIIGATNFPESLDKALTRPGRFDRNVVVSLPDVRGRMAILQH 523

Query: 168 V--KISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              +I    D  LE +  +        ++  +
Sbjct: 524 HAKRIKAAADVNLEAIASRTSGLSGAELENIV 555


>gi|156550335|ref|XP_001603253.1| PREDICTED: similar to 26S protease regulatory subunit [Nasonia
           vitripennis]
          Length = 434

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 268

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 329 DPALMRPGRLDRKIEFGLPDLEGR 352


>gi|123390004|ref|XP_001299810.1| proteasome endopeptidase complex [Trichomonas vaginalis G3]
 gi|121880737|gb|EAX86880.1| proteasome endopeptidase complex, putative [Trichomonas vaginalis
           G3]
          Length = 388

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G+GK+ LA   +  + ++  + +        +     ++ +
Sbjct: 168 PPRGVLLYGPPGTGKTMLAKAVAHHTSASFIAVVGSEFVQKFLGEGPRMVRD 219


>gi|114570962|ref|YP_757642.1| membrane protease FtsH catalytic subunit [Maricaulis maris MCS10]
 gi|114341424|gb|ABI66704.1| membrane protease FtsH catalytic subunit [Maricaulis maris MCS10]
          Length = 628

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 72/209 (34%), Gaps = 41/209 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 193 ALLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 252

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++     +  +L+ A   P    V  
Sbjct: 253 IFIDEIDAVGRSRGAGIGGGNDEREQTLNQLLVEMDGFETNEGIILIAATNRP---DVLD 309

Query: 156 PDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           P L    R     VV    PD    EK++      R++ + + +   I+ R       A 
Sbjct: 310 PALRRPGRFDREVVV--GNPDILGREKILKVHM--REVPLSEDVDVKIIARGTPGFSGA- 364

Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242
            L + ++  AL       R +A +  ++ 
Sbjct: 365 DLANLVNEAALLAARRNKRRVAMQEFEDA 393


>gi|78186575|ref|YP_374618.1| AAA ATPase, CDC48 [Chlorobium luteolum DSM 273]
 gi|78166477|gb|ABB23575.1| AAA ATPase, CDC48 [Chlorobium luteolum DSM 273]
          Length = 718

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 39/167 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P + V L GP G+GK+ +    + ++ +                   + I          
Sbjct: 214 PPKGVFLYGPPGTGKTLIVRAVARETDAYFINISGPEIMGKFYGESEARIRNIFAEAEAH 273

Query: 107 TRKPVLLEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID +                   QL  +++ +      +++ A   P +  
Sbjct: 274 APSIIFIDEIDAIAPRREDMGGEKQVEKRVVAQLLSLMDGLKSRGKVIVIGATNIPNAID 333

Query: 153 VCLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
              P L    R      V +  PD +   ++I      R I +   +
Sbjct: 334 ---PALRRPGRFDREISVSV--PDRNGRLEII--HIHTRGIPLSDDV 373


>gi|56963699|ref|YP_175430.1| cobalt ABC transporter ATP-binding protein [Bacillus clausii
           KSM-K16]
 gi|56909942|dbj|BAD64469.1| cobalt ABC transporter ATP-binding protein [Bacillus clausii
           KSM-K16]
          Length = 489

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 20/111 (18%)

Query: 26  EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +QL  S+P    +  +DL +                +    V+L+GPSGSGKS LA++ +
Sbjct: 10  KQLSLSYPNSGTLLFEDLSID--------------IYSGEKVLLLGPSGSGKSTLAHMMA 55

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL----DFNDTQLFHIINS 132
               S          + ++   +  ++ +D D        ++   F + N 
Sbjct: 56  GLIPSAIELPYHA--EVLVPAKQPAIVFQDPDTQFCMPYVDEEIAFVLENR 104


>gi|268534030|ref|XP_002632145.1| C. briggsae CBR-RPT-4 protein [Caenorhabditis briggsae]
 gi|187033705|emb|CAP27340.1| CBR-RPT-4 protein [Caenorhabditis briggsae AF16]
          Length = 398

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ ++    I     ++ E        
Sbjct: 175 PPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIRE-------- 226

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 227 ------MFNYARDHQ 235


>gi|22297767|ref|NP_681014.1| ATP-binding protein of ABC transporter [Thermosynechococcus
           elongatus BP-1]
 gi|22293944|dbj|BAC07776.1| ATP-binding protein of ABC transporter [Thermosynechococcus
           elongatus BP-1]
          Length = 616

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 23/136 (16%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID--SWPSWPSRVVILVG 71
           D+     P   + Q+         I+ + + V +    A RL++  ++       V+++G
Sbjct: 385 DEALTTPPVPPQSQI--ELVEKPYIALEHVSVDTPN-LARRLVEDVTFALEAGESVVIMG 441

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL------------------ 113
           PSG GKS L    +   +S +   +  ++D +L   ++P ++                  
Sbjct: 442 PSGVGKSSLLRAIAGLWQSGKGRIMRPAVDEVLFLPQRPYMVLGTLRTQLLYPGGDRQTP 501

Query: 114 EDIDLLDFNDTQLFHI 129
           +DI L   ++  L H+
Sbjct: 502 DDILLRALDEVNLAHL 517


>gi|71987372|ref|NP_001022114.1| proteasome Regulatory Particle, ATPase-like family member (rpt-4)
           [Caenorhabditis elegans]
 gi|55710062|gb|AAV58871.1| Proteasome regulatory particle, atpase-like protein 4, isoform b
           [Caenorhabditis elegans]
          Length = 398

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ ++    I     ++ E        
Sbjct: 175 PPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIRE-------- 226

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 227 ------MFNYARDHQ 235


>gi|71413849|ref|XP_809048.1| ATP-dependent chaperone [Trypanosoma cruzi strain CL Brener]
 gi|70873369|gb|EAN87197.1| ATP-dependent chaperone, putative [Trypanosoma cruzi]
          Length = 468

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 51/145 (35%), Gaps = 32/145 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLED 115
           R  +L GP G GKS      + + R         S   S+ A          R  VLLED
Sbjct: 257 RGYLLHGPPGCGKSSFVMALAGELRLSICPLSLSSRGLSDEALVGLLNSAPLRSIVLLED 316

Query: 116 IDLLDFNDTQLFH-----IINS----IHQYDSSLLMT---------ARTFPVSWGVCLP- 156
           ID     D+   H     ++N+      Q    + MT         A   P    V L  
Sbjct: 317 IDRAFSADS---HITMSGLLNALDGVAAQEGRIVFMTTNHVERLDDALIRPGRCDVKLEI 373

Query: 157 DLCSRLKAATVVKISLPD-DDFLEK 180
            L SR +A  + +   PD DD L  
Sbjct: 374 GLLSRDQAQQLFRKFFPDADDKLRA 398


>gi|94309594|ref|YP_582804.1| ATPase [Cupriavidus metallidurans CH34]
 gi|93353446|gb|ABF07535.1| Predicted ATPase with chaperone activity [Cupriavidus metallidurans
           CH34]
          Length = 470

 Score = 38.6 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---LEDIDL 118
           +R +++ GP GSGK+ LA               A ++   +I    P++   ++D + 
Sbjct: 181 ARALMIYGPPGSGKTYLAQRLGALLPGAVPVPHAITVAGEIIQIMDPLVHTPIDDSEA 238


>gi|307172188|gb|EFN63713.1| 26S protease regulatory subunit 7 [Camponotus floridanus]
          Length = 434

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 268

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 329 DPALMRPGRLDRKIEFGLPDLEGR 352


>gi|300937614|ref|ZP_07152423.1| replication-associated recombination protein A [Escherichia coli MS
           21-1]
 gi|300457344|gb|EFK20837.1| replication-associated recombination protein A [Escherichia coli MS
           21-1]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 34  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 89

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 90  ILFVDEVHRFNKSQQD 105


>gi|302853734|ref|XP_002958380.1| hypothetical protein VOLCADRAFT_121711 [Volvox carteri f.
           nagariensis]
 gi|300256260|gb|EFJ40530.1| hypothetical protein VOLCADRAFT_121711 [Volvox carteri f.
           nagariensis]
          Length = 1021

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           D LV     + VR++   P++   ++   GP G+GK+ LA   + ++    FS++     
Sbjct: 310 DYLVVEM-REVVRMLKGDPAYVKGIIF-QGPPGTGKTYLARAIAGEAGVPFFSSVGSEFV 367

Query: 102 SILIDTRKPVL 112
            +        +
Sbjct: 368 EMFAGVAAARV 378


>gi|289065650|gb|ADC80901.1| ATP-binding cassette transporter G family ABCG-107 protein
           [Toxoplasma gondii]
          Length = 981

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           P  +++++GPSGSGK+ L N ++ +S  +       SL  + +   +P+
Sbjct: 178 PGEMLVIMGPSGSGKTTLLNAFAGRSPPSSRVVQDGSLLYLGLQPGEPL 226


>gi|288549436|ref|ZP_05967088.2| hypothetical protein ENTCAN_05464 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319085|gb|EFC58023.1| replication-associated recombination protein A [Enterobacter
           cancerogenus ATCC 35316]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 34  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 89

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 90  ILFVDEVHRFNKSQQD 105


>gi|303315103|ref|XP_003067559.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240107229|gb|EER25414.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320035672|gb|EFW17613.1| sister chromatid cohesion factor [Coccidioides posadasii str.
           Silveira]
          Length = 958

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           ++++L GP G GK+ LA++ + ++ 
Sbjct: 268 KILLLTGPPGLGKTTLAHVCASQAG 292


>gi|239611652|gb|EEQ88639.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
           ER-3]
          Length = 392

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 169 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 228

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 229 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 288

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +++    +   + I+ ++           
Sbjct: 289 DPAL------LRAGRLDRKIEIPLPNEVGRLEILKIHAS--GVAIEGEI----------D 330

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 331 FESIVKMSDGLNGADLRN 348


>gi|254582312|ref|XP_002497141.1| ZYRO0D16346p [Zygosaccharomyces rouxii]
 gi|238940033|emb|CAR28208.1| ZYRO0D16346p [Zygosaccharomyces rouxii]
          Length = 841

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ LA   + +S ST FS  A +L S  +   + ++
Sbjct: 589 PIRGMLLFGPPGTGKTMLARSVATESHSTFFSVSASTLTSKYLGESEKLV 638


>gi|238487444|ref|XP_002374960.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220699839|gb|EED56178.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 640

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 372 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 411


>gi|210049983|dbj|BAG80727.1| putative transposase [Terrabacter sp. YK1]
          Length = 264

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 20/110 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSIL--IDTR 108
           + + GPSG+GK+      + K+                 +   + +  S+  +L  I   
Sbjct: 115 LAISGPSGTGKTHFVEALAHKAIDEGMRVSWFTLESLTTAISRAAVDGSISKVLAKITRA 174

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQ--YDSSLLMTARTFPVSWGVCLP 156
           + V+++DI +L             +       SL +T+   P  +   +P
Sbjct: 175 ELVVVDDIGMLPSGQAAAEAFYRLVDATYERRSLAVTSNIHPAGYDTIMP 224


>gi|209550176|ref|YP_002282093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535932|gb|ACI55867.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 470

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            R V L G  GSG   LA   +  S     +    + DS+   + + +  ED+  +D++ 
Sbjct: 9   DRKVALFGLGGSG---LATARALVSGGAEVTAWDDNPDSVAKASAEGIRTEDLHTIDWSQ 65

Query: 124 TQLF 127
             LF
Sbjct: 66  QALF 69


>gi|149054557|gb|EDM06374.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_c
           [Rattus norvegicus]
          Length = 289

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 100 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 147


>gi|146171839|ref|XP_001018127.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila]
 gi|146144947|gb|EAR97882.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila
           SB210]
          Length = 430

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 205 PPKGVLLYGPPGTGKTLTARAVANRTDACFIRVIGSELVQRYVGEGARMVRE 256


>gi|126740837|ref|ZP_01756522.1| type I secretion system ATPase [Roseobacter sp. SK209-2-6]
 gi|126718133|gb|EBA14850.1| type I secretion system ATPase [Roseobacter sp. SK209-2-6]
          Length = 577

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           P + + ++GPSGSGKS LA      + + R +  +  LD   +D   P +L
Sbjct: 359 PGQALGVIGPSGSGKSTLAK---ALTGAWRPAVGSVRLDGASLDQYAPEVL 406


>gi|71061808|gb|AAZ20819.1| ATP-binding cassette, sub-family G, member 5 [Toxoplasma gondii]
          Length = 999

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           P  +++++GPSGSGK+ L N ++ +S  +       SL  + +   +P+
Sbjct: 178 PGEMLVIMGPSGSGKTTLLNAFAGRSPPSSRVVQDGSLLYLGLQPGEPL 226


>gi|50555003|ref|XP_504910.1| YALI0F02585p [Yarrowia lipolytica]
 gi|49650780|emb|CAG77715.1| YALI0F02585p [Yarrowia lipolytica]
          Length = 436

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 214 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 263


>gi|89092932|ref|ZP_01165884.1| ATPase, AAA family protein [Oceanospirillum sp. MED92]
 gi|89082957|gb|EAR62177.1| ATPase, AAA family protein [Oceanospirillum sp. MED92]
          Length = 452

 Score = 38.6 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 31/178 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND 123
           +I  GP G GK+ LA + +    +   +  A       I     V +E            
Sbjct: 50  MIFWGPPGVGKTTLAKLIAHHVDAHFLTLSAVLSGVKDIR----VAVEQAKQHSAQTGRK 105

Query: 124 TQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVK 169
           T LF    H  N   Q        D +++    T              L SR +   +  
Sbjct: 106 TILFVDEVHRFNKSQQDAFLPYIEDGTIIFVGATTENPSFELNNA---LLSRARVYLLRS 162

Query: 170 ISLPD--DDFLEKV--IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           +   D  +     +    + +  R++ I  ++   + Q  +     A + ++ ++  A
Sbjct: 163 LEATDILNVLNRALDDQERGYGQRKLNISDEMLNRLAQAAD---GDARRSLNLLEIAA 217


>gi|332374604|gb|AEE62443.1| unknown [Dendroctonus ponderosae]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|332030480|gb|EGI70168.1| 26S protease regulatory subunit 8 [Acromyrmex echinatior]
          Length = 427

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 207 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 254


>gi|329849435|ref|ZP_08264281.1| tRNA delta2-isopentenylpyrophosphate transferase [Asticcacaulis
           biprosthecum C19]
 gi|328841346|gb|EGF90916.1| tRNA delta2-isopentenylpyrophosphate transferase [Asticcacaulis
           biprosthecum C19]
          Length = 290

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL-DSILIDTRKPVLLE 114
            + +L GP+ SGKS LA  W+ ++     +  +  L   + I T +P + +
Sbjct: 7   PIYLLAGPTASGKSALALAWARETGGIILNADSMQLYRDVPILTARPTVTD 57


>gi|320531218|ref|ZP_08032203.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320136587|gb|EFW28550.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 688

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    FS  A     + +      + +  D    N   +
Sbjct: 241 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEMFVGVGASRVRDLFDQAKENAPAI 300


>gi|312372820|gb|EFR20697.1| hypothetical protein AND_19657 [Anopheles darlingi]
          Length = 389

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 183 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 230


>gi|307212064|gb|EFN87947.1| 26S protease regulatory subunit 8 [Harpegnathos saltator]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|302820726|ref|XP_002992029.1| hypothetical protein SELMODRAFT_430300 [Selaginella moellendorffii]
 gi|300140151|gb|EFJ06878.1| hypothetical protein SELMODRAFT_430300 [Selaginella moellendorffii]
          Length = 984

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 65  RVVILVGPSGSGKSCLANIWSDK-------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           R +++ GP G+GK+ +A   + +       +  + F +        +      V +++ID
Sbjct: 511 RGILIHGPPGTGKTHIARAMARELQLPFIFASGSEFGDSEIPGPKKVSQAPSIVFIDEID 570

Query: 118 LLDFND 123
            L    
Sbjct: 571 ALAGKQ 576


>gi|300790552|ref|YP_003770843.1| cell division protease FtsH [Amycolatopsis mediterranei U32]
 gi|299800066|gb|ADJ50441.1| cell division protease FtsH [Amycolatopsis mediterranei U32]
          Length = 799

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 64/198 (32%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K+K +QL    P+         D          D L + A  QA+         P  V+ 
Sbjct: 155 KSKAKQLNKDMPKTTFGDVAGADEAVEELYEIKDFLQNPARYQALG-----AKIPKGVL- 208

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112
           L GP G+GK+ LA   + ++    ++        + +                     + 
Sbjct: 209 LYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEMFVGVGASRVRDLFEQAKQNAPCIIF 268

Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSW------ 151
           +++ID +               +  L  +   ++        +L+ A   P         
Sbjct: 269 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFDARGGIILIAATNRPDILDPALLR 328

Query: 152 --------GVCLPDLCSR 161
                    V  PDL  R
Sbjct: 329 PGRFDRQIPVSAPDLRGR 346


>gi|297473582|ref|XP_002686698.1| PREDICTED: peroxisomal biogenesis factor 1 [Bos taurus]
 gi|296488689|gb|DAA30802.1| peroxisomal biogenesis factor 1 [Bos taurus]
          Length = 1254

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA + + +S     S     L S  I   +  + +
Sbjct: 876 VLLYGPPGTGKTLLAGVIARESGMNFISVKGPELLSKYIGASEQAVRD 923


>gi|289743503|gb|ADD20499.1| 26S proteasome regulatory complex ATPase RPT6 [Glossina morsitans
           morsitans]
          Length = 404

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 184 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 231


>gi|270013070|gb|EFA09518.1| hypothetical protein TcasGA2_TC011620 [Tribolium castaneum]
          Length = 441

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 221 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 268


>gi|242064454|ref|XP_002453516.1| hypothetical protein SORBIDRAFT_04g007170 [Sorghum bicolor]
 gi|241933347|gb|EES06492.1| hypothetical protein SORBIDRAFT_04g007170 [Sorghum bicolor]
          Length = 422

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 201 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 248


>gi|237508039|ref|ZP_04520754.1| AAA ATPase [Burkholderia pseudomallei MSHR346]
 gi|235000244|gb|EEP49668.1| AAA ATPase [Burkholderia pseudomallei MSHR346]
          Length = 460

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 34  RCLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
                + D ++V  A ++ A   +++      R +++ GP+GSGK+ LA       R   
Sbjct: 155 ADAHAAFDGIVVEPAMLDAAAASLNA-----GRPLLIYGPAGSGKTYLAERLGSLLRGNV 209

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLD 120
               A      +I    P++  D     
Sbjct: 210 PIPYAIYASGEVIKIHDPLVHVDAPRAA 237


>gi|225712564|gb|ACO12128.1| 26S protease regulatory subunit 8 [Lepeophtheirus salmonis]
 gi|290462495|gb|ADD24295.1| 26S protease regulatory subunit 8 [Lepeophtheirus salmonis]
 gi|290561817|gb|ADD38306.1| 26S protease regulatory subunit 8 [Lepeophtheirus salmonis]
          Length = 410

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 189 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 236


>gi|224285939|gb|ACN40682.1| unknown [Picea sitchensis]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 212 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 259


>gi|224108347|ref|XP_002314815.1| white-brown-complex ABC transporter family [Populus trichocarpa]
 gi|222863855|gb|EEF00986.1| white-brown-complex ABC transporter family [Populus trichocarpa]
          Length = 660

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P R++ ++GPSGSGK+ L N+ + +  +
Sbjct: 85  PGRLLAIMGPSGSGKTTLLNVLAGQLMA 112


>gi|242005917|ref|XP_002423806.1| 26S protease regulatory subunit, putative [Pediculus humanus
           corporis]
 gi|212507022|gb|EEB11068.1| 26S protease regulatory subunit, putative [Pediculus humanus
           corporis]
          Length = 414

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 194 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 241


>gi|204309537|gb|ACI01033.1| replication-associated protein [Porcine circovirus 1]
 gi|204309541|gb|ACI01036.1| replication-associated protein [Porcine circovirus 1]
 gi|204309544|gb|ACI01038.1| replication-associated protein [Porcine circovirus 1]
 gi|204309546|gb|ACI01039.1| replication-associated protein [Porcine circovirus 1]
 gi|204309549|gb|ACI01041.1| replication-associated protein [Porcine circovirus 1]
          Length = 312

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEW 259


>gi|198451681|ref|XP_002137338.1| GA26607 [Drosophila pseudoobscura pseudoobscura]
 gi|198131597|gb|EDY67896.1| GA26607 [Drosophila pseudoobscura pseudoobscura]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 233


>gi|195575129|ref|XP_002105532.1| GD16958 [Drosophila simulans]
 gi|194201459|gb|EDX15035.1| GD16958 [Drosophila simulans]
          Length = 400

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 181 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 228


>gi|195505230|ref|XP_002099414.1| GE23375 [Drosophila yakuba]
 gi|194185515|gb|EDW99126.1| GE23375 [Drosophila yakuba]
          Length = 401

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 229


>gi|195438627|ref|XP_002067234.1| GK16292 [Drosophila willistoni]
 gi|194163319|gb|EDW78220.1| GK16292 [Drosophila willistoni]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|195393634|ref|XP_002055458.1| GJ19383 [Drosophila virilis]
 gi|194149968|gb|EDW65659.1| GJ19383 [Drosophila virilis]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|195341572|ref|XP_002037380.1| GM12144 [Drosophila sechellia]
 gi|194131496|gb|EDW53539.1| GM12144 [Drosophila sechellia]
          Length = 400

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 181 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 228


>gi|195164327|ref|XP_002023000.1| GL16409 [Drosophila persimilis]
 gi|194105062|gb|EDW27105.1| GL16409 [Drosophila persimilis]
          Length = 269

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 49  VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 96


>gi|195134921|ref|XP_002011885.1| GI14329 [Drosophila mojavensis]
 gi|193909139|gb|EDW08006.1| GI14329 [Drosophila mojavensis]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|195044618|ref|XP_001991849.1| GH11847 [Drosophila grimshawi]
 gi|193901607|gb|EDW00474.1| GH11847 [Drosophila grimshawi]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|193709132|ref|XP_001943740.1| PREDICTED: 26S protease regulatory subunit 8-like [Acyrthosiphon
           pisum]
          Length = 408

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 188 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 235


>gi|194905344|ref|XP_001981178.1| GG11925 [Drosophila erecta]
 gi|190655816|gb|EDV53048.1| GG11925 [Drosophila erecta]
          Length = 401

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 229


>gi|194897562|ref|XP_001978679.1| GG19719 [Drosophila erecta]
 gi|195346140|ref|XP_002039625.1| GM23074 [Drosophila sechellia]
 gi|195482260|ref|XP_002101976.1| GE17917 [Drosophila yakuba]
 gi|195567993|ref|XP_002107540.1| GD17527 [Drosophila simulans]
 gi|190650328|gb|EDV47606.1| GG19719 [Drosophila erecta]
 gi|194134851|gb|EDW56367.1| GM23074 [Drosophila sechellia]
 gi|194189500|gb|EDX03084.1| GE17917 [Drosophila yakuba]
 gi|194204950|gb|EDX18526.1| GD17527 [Drosophila simulans]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|194769924|ref|XP_001967051.1| GF21725 [Drosophila ananassae]
 gi|190622846|gb|EDV38370.1| GF21725 [Drosophila ananassae]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|194765156|ref|XP_001964693.1| GF23322 [Drosophila ananassae]
 gi|190614965|gb|EDV30489.1| GF23322 [Drosophila ananassae]
          Length = 402

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 183 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 230


>gi|170048670|ref|XP_001870728.1| 26S protease regulatory subunit 8 [Culex quinquefasciatus]
 gi|167870706|gb|EDS34089.1| 26S protease regulatory subunit 8 [Culex quinquefasciatus]
          Length = 402

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 229


>gi|220920765|ref|YP_002496066.1| Holliday junction DNA helicase RuvB [Methylobacterium nodulans ORS
           2060]
 gi|219945371|gb|ACL55763.1| Holliday junction DNA helicase RuvB [Methylobacterium nodulans ORS
           2060]
          Length = 348

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 37/203 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+ VGP G GK+ LA I + +      S     +        +   LE+ D+L  ++   
Sbjct: 56  VLFVGPPGLGKTTLAQIVARELGVNFRSTSGPVIAKAGDLAAQLTNLEERDVLFIDEI-- 113

Query: 127 FHIINSIHQY----------------------------DSSLLMTARTFPVSWGVCLPDL 158
            H +N   +                                 L+ A T        L D 
Sbjct: 114 -HRLNPAVEEILYPAMEDYQLDLIIGEGPAARSVKIELPKFTLVAATTRAGLLTTPLRD- 171

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
               +    +++   + D LE ++ +      I +    A  I +R   +   A +L+ +
Sbjct: 172 ----RFGIPIRLEFYEIDELEAIVARGARVLGIGMAPDGANEIAKRARGTPRIAGRLLRR 227

Query: 219 MDNLALSRGMG-ITRSLAAEVLK 240
           + + A+      +TR++A + L+
Sbjct: 228 VRDFAIVEDAPTVTRAIADKALR 250


>gi|160943998|ref|ZP_02091228.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444674|gb|EDP21678.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii
           M21/2]
          Length = 714

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           V+LVGP G+GK+ LA   + ++    +S        + +      + +  D  
Sbjct: 249 VLLVGPPGTGKTLLARACAGEAGVPFYSLSGSDFVEMYVGVGASRVRDLFDKA 301


>gi|156544994|ref|XP_001608055.1| PREDICTED: similar to GA13327-PA [Nasonia vitripennis]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|148927687|ref|ZP_01811136.1| DNA polymerase III, subunits gamma and tau [candidate division TM7
           genomosp. GTL1]
 gi|147886962|gb|EDK72483.1| DNA polymerase III, subunits gamma and tau [candidate division TM7
           genomosp. GTL1]
          Length = 454

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 33/181 (18%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--- 120
               +  GP G+GK+ +A I +       + N +  LD + ID      ++DI  L    
Sbjct: 37  GHAFLFTGPRGTGKTSIARILAHAINDLPYENDSLHLDIVEIDAASNRRIDDIRDLREKV 96

Query: 121 -------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL---------PDL 158
                         ++  +        +  ++LL T    P      L           +
Sbjct: 97  HIAPTSAPFKVYIIDEVHM-----LTGESFNALLKTLEEPPAHVVFILATTEAHKLPATI 151

Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218
            SR +     ++    +  + K +  +     I ID+     I +  E S   +  L+D+
Sbjct: 152 VSRTQRF-HFRLIP--EAEVAKHLSHIAEQENIKIDEDALELIAEHGEGSFRDSISLLDQ 208

Query: 219 M 219
           +
Sbjct: 209 L 209


>gi|145910334|gb|ABP98815.1| rep protein [Porcine circovirus 1]
          Length = 312

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEW 259


>gi|145344936|ref|XP_001416980.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577206|gb|ABO95273.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 400

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 173 PPKGVLLYGPPGTGKTLLAKAIASNIDANFLKIVSSAIVDKYIGESARLIRE 224


>gi|122891978|gb|ABM67071.1| replicase [Porcine circovirus 1]
          Length = 308

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEW 259


>gi|115712886|ref|XP_784151.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115942106|ref|XP_001184577.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 401

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 181 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 228


>gi|289163351|ref|YP_003422530.1| replicase [Porcine circovirus type 1/2a]
 gi|110005950|gb|ABG48510.1| rep [Porcine circovirus 1]
 gi|257838635|gb|ACV71292.1| replicase [Porcine circovirus type 1/2a]
 gi|257838638|gb|ACV71294.1| replicase [Porcine circovirus type 1/2a]
 gi|258589107|gb|ACV82591.1| replicase [Porcine circovirus type 1/2a]
          Length = 312

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEW 259


>gi|109675125|gb|ABG37025.1| replicase [Porcine circovirus 1]
          Length = 312

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEW 259


>gi|157106669|ref|XP_001649429.1| 26S protease regulatory subunit [Aedes aegypti]
 gi|157136893|ref|XP_001663850.1| 26S protease regulatory subunit [Aedes aegypti]
 gi|108868799|gb|EAT33024.1| 26S protease regulatory subunit [Aedes aegypti]
 gi|108869833|gb|EAT34058.1| 26S protease regulatory subunit [Aedes aegypti]
          Length = 403

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 183 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 230


>gi|91091360|ref|XP_972551.1| PREDICTED: similar to GA13327-PA [Tribolium castaneum]
          Length = 404

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 184 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 231


>gi|92918917|gb|ABE96822.1| rep [Porcine circovirus 1]
          Length = 312

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEW 259


>gi|92918920|gb|ABE96824.1| rep [Porcine circovirus 1]
          Length = 312

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEW 259


>gi|119190425|ref|XP_001245819.1| hypothetical protein CIMG_05260 [Coccidioides immitis RS]
          Length = 963

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           ++++L GP G GK+ LA++ + ++ 
Sbjct: 268 KILLLTGPPGLGKTTLAHVCASQAG 292


>gi|54399525|gb|AAV34141.1| replicase [Porcine circovirus 1]
 gi|58465247|gb|AAW78477.1| replicase [Porcine circovirus 1]
 gi|58465253|gb|AAW78481.1| replicase [Porcine circovirus 1]
          Length = 312

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEW 259


>gi|52630927|gb|AAU84927.1| putative 26S protease regulatory subunit 8 [Toxoptera citricida]
 gi|326509375|dbj|BAJ91604.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 408

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 188 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 235


>gi|2245467|gb|AAC48284.1| DUG [Drosophila melanogaster]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|25144278|ref|NP_741099.1| hypothetical protein F56F11.4 [Caenorhabditis elegans]
 gi|14916328|gb|AAK21407.2| Hypothetical protein F56F11.4a [Caenorhabditis elegans]
          Length = 411

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 191 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 238


>gi|300823631|ref|ZP_07103758.1| replication-associated recombination protein A [Escherichia coli MS
           119-7]
 gi|300896501|ref|ZP_07115025.1| replication-associated recombination protein A [Escherichia coli MS
           198-1]
 gi|300902951|ref|ZP_07120895.1| replication-associated recombination protein A [Escherichia coli MS
           84-1]
 gi|300929585|ref|ZP_07145048.1| replication-associated recombination protein A [Escherichia coli MS
           187-1]
 gi|300949748|ref|ZP_07163725.1| replication-associated recombination protein A [Escherichia coli MS
           116-1]
 gi|300954715|ref|ZP_07167150.1| replication-associated recombination protein A [Escherichia coli MS
           175-1]
 gi|300978544|ref|ZP_07174297.1| replication-associated recombination protein A [Escherichia coli MS
           45-1]
 gi|300983197|ref|ZP_07176476.1| replication-associated recombination protein A [Escherichia coli MS
           200-1]
 gi|301047850|ref|ZP_07194900.1| replication-associated recombination protein A [Escherichia coli MS
           185-1]
 gi|301302501|ref|ZP_07208632.1| replication-associated recombination protein A [Escherichia coli MS
           124-1]
 gi|301646337|ref|ZP_07246225.1| replication-associated recombination protein A [Escherichia coli MS
           146-1]
 gi|300300278|gb|EFJ56663.1| replication-associated recombination protein A [Escherichia coli MS
           185-1]
 gi|300306961|gb|EFJ61481.1| replication-associated recombination protein A [Escherichia coli MS
           200-1]
 gi|300318326|gb|EFJ68110.1| replication-associated recombination protein A [Escherichia coli MS
           175-1]
 gi|300359650|gb|EFJ75520.1| replication-associated recombination protein A [Escherichia coli MS
           198-1]
 gi|300405012|gb|EFJ88550.1| replication-associated recombination protein A [Escherichia coli MS
           84-1]
 gi|300409623|gb|EFJ93161.1| replication-associated recombination protein A [Escherichia coli MS
           45-1]
 gi|300450862|gb|EFK14482.1| replication-associated recombination protein A [Escherichia coli MS
           116-1]
 gi|300462473|gb|EFK25966.1| replication-associated recombination protein A [Escherichia coli MS
           187-1]
 gi|300523831|gb|EFK44900.1| replication-associated recombination protein A [Escherichia coli MS
           119-7]
 gi|300842340|gb|EFK70100.1| replication-associated recombination protein A [Escherichia coli MS
           124-1]
 gi|301075440|gb|EFK90246.1| replication-associated recombination protein A [Escherichia coli MS
           146-1]
 gi|315257932|gb|EFU37900.1| replication-associated recombination protein A [Escherichia coli MS
           85-1]
 gi|315291251|gb|EFU50611.1| replication-associated recombination protein A [Escherichia coli MS
           153-1]
 gi|315296140|gb|EFU55449.1| replication-associated recombination protein A [Escherichia coli MS
           16-3]
 gi|323190714|gb|EFZ75983.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli RN587/1]
 gi|324009813|gb|EGB79032.1| replication-associated recombination protein A [Escherichia coli MS
           57-2]
 gi|324012982|gb|EGB82201.1| replication-associated recombination protein A [Escherichia coli MS
           60-1]
 gi|324019017|gb|EGB88236.1| replication-associated recombination protein A [Escherichia coli MS
           117-3]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 34  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 89

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 90  ILFVDEVHRFNKSQQD 105


>gi|57233617|ref|YP_182301.1| hypothetical protein DET1606 [Dehalococcoides ethenogenes 195]
 gi|57224065|gb|AAW39122.1| RecA [Dehalococcoides ethenogenes 195]
          Length = 337

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 42  DLLVHSAIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           + +  S++   + L +   P    R+  + GP GSGK+ LA     +++          +
Sbjct: 38  EFIPTSSLALDIALGVGGIPR--GRISEIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDV 95

Query: 101 DSILIDTRKPVLLEDIDLL-----DFNDTQL 126
           +  L          ++D L     D  +  L
Sbjct: 96  EHALDPKYASTCGVNLDELLISQPDTGEEAL 126


>gi|11528025|gb|AAG37080.1| unknown [Beet necrotic yellow vein virus]
          Length = 384

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 47  SAIEQAVRL-----IDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIA 97
                AV+L     +     W +RV I++G  G GKS     L + +  K +       +
Sbjct: 94  PCNAAAVKLDTLQKVKMSSDWTARVGIVLGAPGVGKSTSIKNLLDKFGAKHKMVLCLPFS 153

Query: 98  KSLDSILIDTRKPVLLEDI 116
           + L+ +        L++D+
Sbjct: 154 QLLEGVFAGRLDTFLVDDL 172


>gi|66520165|ref|XP_623053.1| PREDICTED: 26S protease regulatory subunit 8 isoform 1 [Apis
           mellifera]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|58465250|gb|AAW78479.1| replicase [Porcine circovirus 1]
          Length = 312

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEW 259


>gi|24651451|ref|NP_651811.1| Rpt6R [Drosophila melanogaster]
 gi|7301963|gb|AAF57069.1| Rpt6R [Drosophila melanogaster]
 gi|21430822|gb|AAM51089.1| SD17676p [Drosophila melanogaster]
 gi|220959236|gb|ACL92161.1| CG2241-PA [synthetic construct]
          Length = 399

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 180 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 227


>gi|78099141|sp|Q805H4|REP_PCV1C RecName: Full=Replication-associated protein; AltName:
           Full=ATP-dependent helicase Rep; AltName: Full=RepP
 gi|28192631|gb|AAN77859.1| rep [Porcine circovirus 1]
 gi|28397776|gb|AAO39666.1| putative replicase [Porcine circovirus 1]
 gi|58465256|gb|AAW78483.1| replicase [Porcine circovirus 1]
 gi|88824785|gb|ABD52438.1| rep [Porcine circovirus 1]
 gi|92918914|gb|ABE96820.1| rep [Porcine circovirus 1]
 gi|145226659|gb|ABP48093.1| rep protein [Porcine circovirus 1]
 gi|229597236|gb|ACQ82767.1| rep protein [Porcine circovirus 1]
 gi|261410352|gb|ACX80270.1| replicase [Porcine circovirus 1]
 gi|285013662|gb|ADC32807.1| rep protein [Porcine circovirus 1]
 gi|298352663|gb|ADI76907.1| replicase [Porcine circovirus 1]
 gi|312434210|gb|ADQ74863.1| replicase [Porcine circovirus 1]
          Length = 312

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEW 259


>gi|19920408|ref|NP_608447.1| Pros45 [Drosophila melanogaster]
 gi|14286160|sp|O18413|PRS8_DROME RecName: Full=26S protease regulatory subunit 8
 gi|2815905|gb|AAC63219.1| Pros45 proteosome subunit homolog [Drosophila melanogaster]
 gi|7295522|gb|AAF50835.1| Pros45 [Drosophila melanogaster]
 gi|15291775|gb|AAK93156.1| LD26005p [Drosophila melanogaster]
 gi|220945798|gb|ACL85442.1| Pros45-PA [synthetic construct]
 gi|220955554|gb|ACL90320.1| Pros45-PA [synthetic construct]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|1709799|sp|P54814|PRS8_MANSE RecName: Full=26S protease regulatory subunit 8; AltName:
           Full=Protein 18-56
 gi|1167963|gb|AAC46996.1| 18-56 protein [Manduca sexta]
          Length = 402

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 229


>gi|58376339|ref|XP_308557.2| AGAP007243-PA [Anopheles gambiae str. PEST]
 gi|55245639|gb|EAA04200.3| AGAP007243-PA [Anopheles gambiae str. PEST]
          Length = 403

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 183 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 230


>gi|125983936|ref|XP_001355733.1| GA13327 [Drosophila pseudoobscura pseudoobscura]
 gi|54644049|gb|EAL32792.1| GA13327 [Drosophila pseudoobscura pseudoobscura]
          Length = 405

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|325120859|emb|CBZ56414.1| hypothetical protein NCLIV_068380 [Neospora caninum Liverpool]
          Length = 489

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 261 PPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRE 312


>gi|315619204|gb|EFU99783.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 3431]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 34  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 89

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 90  ILFVDEVHRFNKSQQD 105


>gi|302668717|ref|YP_003832542.1| ATP-dependent metallopeptidase HflB3 [Butyrivibrio proteoclasticus
           B316]
 gi|302397057|gb|ADL35960.1| ATP-dependent metallopeptidase HflB3 [Butyrivibrio proteoclasticus
           B316]
          Length = 608

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L+GP G+GK+ LA   + ++  T     +  + +       P  +E
Sbjct: 217 LLLIGPPGTGKTMLAKAVAHEAGVTFIYQNSAKVVNNAFVGTGPARIE 264


>gi|302390612|ref|YP_003826433.1| membrane protease FtsH catalytic subunit [Thermosediminibacter
           oceani DSM 16646]
 gi|302201240|gb|ADL08810.1| membrane protease FtsH catalytic subunit [Thermosediminibacter
           oceani DSM 16646]
          Length = 599

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKKN 248


>gi|291085633|ref|ZP_06353556.2| replication-associated recombination protein A [Citrobacter youngae
           ATCC 29220]
 gi|291070482|gb|EFE08591.1| replication-associated recombination protein A [Citrobacter youngae
           ATCC 29220]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 34  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 89

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 90  ILFVDEVHRFNKSQQD 105


>gi|290466863|gb|ADD25765.1| replicase protein [Porcine circovirus 2]
          Length = 314

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  ++D+  +       K  D       + V+++D    
Sbjct: 163 RDWKTNVHVIVGPPGCGKSKWAANFADQETTYWKPPRNKWWDG--YHGEEVVVIDDFYGW 220

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P+ W
Sbjct: 221 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEW 262


>gi|281204261|gb|EFA78457.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 907

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P R ++L GP G+GK+ LAN  + + +    S  A  + S L    +             
Sbjct: 290 PPRGILLHGPPGTGKTLLANAIAGELKIPLISISAPEIASGLSGESESKIRGLFASAQEQ 349

Query: 111 ----VLLEDIDLLD 120
               V +++ID + 
Sbjct: 350 APCIVFIDEIDAIA 363


>gi|270001190|gb|EEZ97637.1| hypothetical protein TcasGA2_TC016085 [Tribolium castaneum]
          Length = 691

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 24/46 (52%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           R ++L G  G+GK+ LA   ++     +  + A+++ +  +D +  
Sbjct: 374 RRLVLCGAPGTGKTHLATRLAEFHAQAQGRDPAEAVATFNVDNKSA 419


>gi|294940170|ref|XP_002782699.1| 26S protease regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239894579|gb|EER14494.1| 26S protease regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 419

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 163 PPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRE 214


>gi|254577819|ref|XP_002494896.1| ZYRO0A12342p [Zygosaccharomyces rouxii]
 gi|238937785|emb|CAR25963.1| ZYRO0A12342p [Zygosaccharomyces rouxii]
          Length = 363

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   S
Sbjct: 126 PSGVL-LHGPPGCGKTMLAKALAHESGANFIS 156


>gi|190348537|gb|EDK41003.2| hypothetical protein PGUG_05101 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 522

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 300 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 349


>gi|170769294|ref|ZP_02903747.1| putative DNA recombination-associated ATPase RarA [Escherichia
           albertii TW07627]
 gi|170121946|gb|EDS90877.1| putative DNA recombination-associated ATPase RarA [Escherichia
           albertii TW07627]
          Length = 447

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|157780270|gb|ABV71690.1| ORF1 [Human parvovirus 4]
          Length = 663

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 58  SWPS--WPSRVVI-LVGPSGSGKSCLANIWSDKS 88
           +W    WP R  I L GP+ +GK+ LA   ++ S
Sbjct: 318 AWARGVWPKRRAIWLWGPASTGKTLLAAAIANLS 351


>gi|167899811|ref|ZP_02487212.1| hypothetical protein Bpse7_39170 [Burkholderia pseudomallei 7894]
          Length = 460

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 34  RCLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
                + D ++V  A ++ A   +++      R +++ GP+GSGK+ LA       R   
Sbjct: 155 ADAHAAFDGIVVEPAMLDAAAASLNA-----GRPLLIYGPAGSGKTYLAERLGSLLRGNV 209

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLD 120
               A      +I    P++  D     
Sbjct: 210 PIPYAIYASGEVIKIHDPLVHVDAPRAA 237


>gi|158340995|ref|YP_001522162.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
 gi|158311236|gb|ABW32848.1| transposase-associated ATP-binding protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 233

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 14/55 (25%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA 81
           F F  C  +              +  + + P W       +IL GPSG GK+ LA
Sbjct: 86  FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLA 129


>gi|156045467|ref|XP_001589289.1| hypothetical protein SS1G_09923 [Sclerotinia sclerotiorum 1980]
 gi|154694317|gb|EDN94055.1| hypothetical protein SS1G_09923 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 399

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 132 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 162


>gi|163852856|ref|YP_001640899.1| hypothetical protein Mext_3442 [Methylobacterium extorquens PA1]
 gi|240140182|ref|YP_002964659.1| hypothetical protein MexAM1_META1p3671 [Methylobacterium extorquens
           AM1]
 gi|254562621|ref|YP_003069716.1| hypothetical protein METDI4246 [Methylobacterium extorquens DM4]
 gi|163664461|gb|ABY31828.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
 gi|240010156|gb|ACS41382.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
 gi|254269899|emb|CAX25877.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 499

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFND 123
            +++ G SGSGKS L     ++S       I         L +    V++E     D N+
Sbjct: 26  RLLVQGNSGSGKSHLLRRLLEQSAGLVQQAIIDPEGDFVTLAERYGHVVIE----ADGNE 81

Query: 124 TQLFHIINSIHQYDSSLLMT 143
            +L  I   + ++  S++++
Sbjct: 82  AELLRIAARVREHRVSVVLS 101


>gi|146093343|ref|XP_001466783.1| katanin-like protein; serine peptidase, Clan SJ, family S16
           [Leishmania infantum]
 gi|134071146|emb|CAM69830.1| vacuolar protein sorting-associated protein 4 [Leishmania infantum
           JPCM5]
 gi|322500909|emb|CBZ35986.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 445

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST 91
           P R ++L GP G+GKS LA   + ++  T
Sbjct: 162 PWRGILLYGPPGTGKSYLAKAVATEADGT 190


>gi|119482928|ref|XP_001261492.1| sister chromatid cohesion factor (Chl12), putative [Neosartorya
           fischeri NRRL 181]
 gi|119409647|gb|EAW19595.1| sister chromatid cohesion factor (Chl12), putative [Neosartorya
           fischeri NRRL 181]
          Length = 940

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 266 KVLLLCGPPGLGKTTLAHVCAKQAG 290


>gi|157803767|ref|YP_001492316.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           canadensis str. McKiel]
 gi|166216984|sp|A8EYU8|MIAA_RICCK RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|157785030|gb|ABV73531.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           canadensis str. McKiel]
          Length = 325

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           ++IL GP+ SGKS L + ++        +     +DS+ +    P++      +   +  
Sbjct: 6   IIILCGPTASGKSYLGHEFAKAYNGEIIN-----IDSMQVYKETPIITASPSQIYKTEIP 60

Query: 126 LFHIIN 131
            +H+ N
Sbjct: 61  -YHLYN 65


>gi|115437804|ref|NP_001043385.1| Os01g0574500 [Oryza sativa Japonica Group]
 gi|75330321|sp|Q8LQJ8|FTSH5_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 5,
           mitochondrial; Short=OsFTSH5; Flags: Precursor
 gi|20521392|dbj|BAB91903.1| cell division protein ftsH (ftsH)-like [Oryza sativa Japonica
           Group]
 gi|113532916|dbj|BAF05299.1| Os01g0574500 [Oryza sativa Japonica Group]
 gi|125570901|gb|EAZ12416.1| hypothetical protein OsJ_02306 [Oryza sativa Japonica Group]
          Length = 715

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 38/190 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TRKPVL 112
           V+LVGP G+GK+ LA   + ++    FS      + + +                R P +
Sbjct: 266 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 325

Query: 113 L--EDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--P 156
           +  ++ID +  +              QL   ++   Q +  +++ A  FP S    L  P
Sbjct: 326 IFMDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP 385

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
               R      + +  PD +   +++    +   +     +   I+ R       A  L 
Sbjct: 386 ---GRFD--RHIVVPNPDVEGRRQILESHMSK--VLKSDDVDLMIIARGTPGFSGA-DLA 437

Query: 217 DKMDNLALSR 226
           + ++  AL  
Sbjct: 438 NLVNVAALKA 447


>gi|33859604|ref|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus]
 gi|26345730|dbj|BAC36516.1| unnamed protein product [Mus musculus]
          Length = 475

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 250 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 309

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 310 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 369

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 370 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 410

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 411 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 445


>gi|74311450|ref|YP_309869.1| recombination factor protein RarA [Shigella sonnei Ss046]
 gi|157159331|ref|YP_001462090.1| recombination factor protein RarA [Escherichia coli E24377A]
 gi|218694365|ref|YP_002402032.1| recombination factor protein RarA [Escherichia coli 55989]
 gi|260854183|ref|YP_003228074.1| recombination protein [Escherichia coli O26:H11 str. 11368]
 gi|260867064|ref|YP_003233466.1| recombination protein [Escherichia coli O111:H- str. 11128]
 gi|307311721|ref|ZP_07591361.1| AAA ATPase central domain protein [Escherichia coli W]
 gi|73854927|gb|AAZ87634.1| putative polynucleotide enzyme [Shigella sonnei Ss046]
 gi|157081361|gb|ABV21069.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E24377A]
 gi|218351097|emb|CAU96801.1| recombination protein [Escherichia coli 55989]
 gi|257752832|dbj|BAI24334.1| recombination protein [Escherichia coli O26:H11 str. 11368]
 gi|257763420|dbj|BAI34915.1| recombination protein [Escherichia coli O111:H- str. 11128]
 gi|306908276|gb|EFN38775.1| AAA ATPase central domain protein [Escherichia coli W]
 gi|315060177|gb|ADT74504.1| recombination protein [Escherichia coli W]
 gi|323157222|gb|EFZ43345.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli
           EPECa14]
 gi|323165353|gb|EFZ51140.1| magnesium chelatase, subunit ChlI family protein [Shigella sonnei
           53G]
 gi|323172136|gb|EFZ57774.1| magnesium chelatase, subunit ChlI family protein [Escherichia coli
           LT-68]
 gi|323379266|gb|ADX51534.1| AAA ATPase central domain protein [Escherichia coli KO11]
          Length = 447

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|70986950|ref|XP_748961.1| sister chromatid cohesion factor (Chl12) [Aspergillus fumigatus
           Af293]
 gi|66846591|gb|EAL86923.1| sister chromatid cohesion factor (Chl12), putative [Aspergillus
           fumigatus Af293]
 gi|159123269|gb|EDP48389.1| sister chromatid cohesion factor (Chl12), putative [Aspergillus
           fumigatus A1163]
          Length = 940

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 266 KVLLLCGPPGLGKTTLAHVCAKQAG 290


>gi|4506209|ref|NP_002794.1| 26S protease regulatory subunit 7 1 [Homo sapiens]
 gi|62751409|ref|NP_001015639.1| 26S protease regulatory subunit 7 [Bos taurus]
 gi|114615260|ref|XP_001159873.1| PREDICTED: proteasome 26S ATPase subunit 2 isoform 1 [Pan
           troglodytes]
 gi|114615262|ref|XP_519288.2| PREDICTED: 26S protease regulatory subunit 7 isoform 2 [Pan
           troglodytes]
 gi|301786591|ref|XP_002928709.1| PREDICTED: 26S protease regulatory subunit 7-like [Ailuropoda
           melanoleuca]
 gi|311264705|ref|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa]
 gi|332238048|ref|XP_003268215.1| PREDICTED: 26S protease regulatory subunit 7 [Nomascus leucogenys]
 gi|547930|sp|P35998|PRS7_HUMAN RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2; AltName:
           Full=Protein MSS1
 gi|75070030|sp|Q5E9F9|PRS7_BOVIN RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2
 gi|75075782|sp|Q4R4R0|PRS7_MACFA RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2
 gi|219931|dbj|BAA01868.1| mammalian suppressor of sgv1 [Homo sapiens]
 gi|12803525|gb|AAH02589.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Homo
           sapiens]
 gi|51095169|gb|EAL24412.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Homo
           sapiens]
 gi|59858287|gb|AAX08978.1| proteasome 26S ATPase subunit 2 [Bos taurus]
 gi|67971146|dbj|BAE01915.1| unnamed protein product [Macaca fascicularis]
 gi|119603738|gb|EAW83332.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2, isoform
           CRA_b [Homo sapiens]
 gi|149046588|gb|EDL99413.1| proteasome (prosome, macropain) 26S subunit, ATPase 2, isoform
           CRA_d [Rattus norvegicus]
 gi|158455000|gb|AAI02392.2| Proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Bos taurus]
 gi|261858398|dbj|BAI45721.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2 [synthetic
           construct]
 gi|296488578|gb|DAA30691.1| 26S protease regulatory subunit 7 [Bos taurus]
 gi|228886|prf||1813280A tat-mediated transactivation modulator
          Length = 433

 Score = 38.6 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 369 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403


>gi|333008794|gb|EGK28254.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-272]
 gi|333020322|gb|EGK39588.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-227]
          Length = 447

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|323453628|gb|EGB09499.1| hypothetical protein AURANDRAFT_24084 [Aureococcus anophagefferens]
          Length = 282

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P R V+L GP G+GK+ LA   +    +T F+  A +L S
Sbjct: 36  PWRGVLLFGPPGTGKTLLAKAAAGVEGATFFNVSAATLAS 75


>gi|320588326|gb|EFX00795.1| aaa family ATPase [Grosmannia clavigera kw1407]
          Length = 846

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+  ++L GP G+GK+ LA   + +SRST FS  A SL S  +   + ++
Sbjct: 591 PATGMLLFGPPGTGKTMLARAVATESRSTFFSISASSLTSKYLGESEKLV 640


>gi|301791878|ref|XP_002930906.1| PREDICTED: peroxisome biogenesis factor 1-like [Ailuropoda
           melanoleuca]
          Length = 1269

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA + + +S     S     L S  I   +  + +
Sbjct: 863 VLLYGPPGTGKTLLAGVIARESGMNFISVKGPELLSKYIGASEQAVRD 910


>gi|291551020|emb|CBL27282.1| phage DNA replication protein (predicted replicative helicase
           loader) [Ruminococcus torques L2-14]
          Length = 271

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 20/116 (17%)

Query: 52  AVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDK-----------SRSTRFSNIAK 98
           A   +D+W       +  +  GP G+GKS +A   +++           + +T   +I  
Sbjct: 97  AKSYVDNWDEMKRNHIGCLFWGPVGTGKSYIAGCIANELLKQEVTVKMTNFNTIIDDIFP 156

Query: 99  SLDSI----LIDTRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTF 147
             D       + + + ++++D+ +   ++  L   F +I+   +    L++T    
Sbjct: 157 LADKTEYINALASYQLLIIDDLGVERNSEYALGIIFSVIDRRIRSGRPLIITTNLP 212


>gi|302501592|ref|XP_003012788.1| hypothetical protein ARB_01039 [Arthroderma benhamiae CBS 112371]
 gi|327304381|ref|XP_003236882.1| 26S protease regulatory subunit S10B [Trichophyton rubrum CBS
           118892]
 gi|291176348|gb|EFE32148.1| hypothetical protein ARB_01039 [Arthroderma benhamiae CBS 112371]
 gi|326459880|gb|EGD85333.1| 26S protease regulatory subunit S10B [Trichophyton rubrum CBS
           118892]
 gi|326472718|gb|EGD96727.1| 26S proteasome regulatory subunit [Trichophyton tonsurans CBS
           112818]
 gi|326482035|gb|EGE06045.1| 26S protease regulatory subunit S10B [Trichophyton equinum CBS
           127.97]
          Length = 393

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 229

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 230 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 289

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +V+    +   + ++ ++           
Sbjct: 290 DPAL------LRAGRLDRKIEIPLPNEVGRLEVLKIHAS--GVSMEGEI----------D 331

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 332 FETIVKMSDGLNGADLRN 349


>gi|281353480|gb|EFB29064.1| hypothetical protein PANDA_021538 [Ailuropoda melanoleuca]
          Length = 1268

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA + + +S     S     L S  I   +  + +
Sbjct: 862 VLLYGPPGTGKTLLAGVIARESGMNFISVKGPELLSKYIGASEQAVRD 909


>gi|267026872|gb|ACY78469.1| non-structural protein [Human parvovirus 4]
          Length = 663

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 58  SWPS--WPSRVVI-LVGPSGSGKSCLANIWSDKS 88
           +W    WP R  I L GP+ +GK+ LA   ++ S
Sbjct: 318 AWARGVWPKRRAIWLWGPASTGKTLLAAAIANLS 351


>gi|258651092|ref|YP_003200248.1| ATP-dependent metalloprotease FtsH [Nakamurella multipartita DSM
           44233]
 gi|258554317|gb|ACV77259.1| ATP-dependent metalloprotease FtsH [Nakamurella multipartita DSM
           44233]
          Length = 760

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 46/148 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 200 VLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 259

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 260 IFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEAKGGIILIAATNRPDILDPAL 319

Query: 156 --------------PDLCSRLKAATVVK 169
                         PDL  R +A   V 
Sbjct: 320 LRPGRFDRQIPVGQPDLKGR-QAILAVH 346


>gi|257063441|ref|YP_003143113.1| Holliday junction DNA helicase subunit RuvB [Slackia
           heliotrinireducens DSM 20476]
 gi|256791094|gb|ACV21764.1| Holliday junction DNA helicase subunit RuvB [Slackia
           heliotrinireducens DSM 20476]
          Length = 346

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSRVVILVGP 72
           +   P+  E+ L            DD +    V  ++   ++           V+   GP
Sbjct: 19  RAVTPELTEDDLALDRSLRPK-HLDDYIGQTRVKDSLSILIQAAKQRGECMDHVLF-SGP 76

Query: 73  SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINS 132
            G GK+ LA + +++  +   +    ++            LED D+L  ++    H +N 
Sbjct: 77  PGLGKTTLATVVANELGANIRTTSGPAIARTGDLAAILTNLEDGDVLFIDEI---HRLNR 133

Query: 133 IHQY 136
             + 
Sbjct: 134 QVEE 137


>gi|254574126|ref|XP_002494172.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
 gi|238033971|emb|CAY71993.1| One of six ATPases of the 19S regulatory particle of the 26S
           proteasome [Pichia pastoris GS115]
 gi|328354009|emb|CCA40406.1| 26S protease regulatory subunit 4 homolog [Pichia pastoris CBS
           7435]
          Length = 438

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 216 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 265


>gi|167841423|ref|ZP_02468107.1| Predicted ATPase with chaperone activity, putative [Burkholderia
           thailandensis MSMB43]
          Length = 460

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 49  IEQAV--RLIDSWPS--WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
              A+   ++D+  +     R +++ GP+GSGK+ LA       R       A      +
Sbjct: 162 NGVAIEPAMLDAAAASMNAGRPLLIYGPAGSGKTYLAERLGALLRGNVPIPYAIHASGEI 221

Query: 105 IDTRKPVLLEDIDLLD 120
           I    P++  D     
Sbjct: 222 IRIHDPLVHVDAPRAA 237


>gi|168066656|ref|XP_001785250.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663155|gb|EDQ49936.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 498

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 38/188 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ L    +   R+  +  +A S  S  +   +  L E   L  F +  L
Sbjct: 117 IIFWGPPGTGKTSLVQTIA---RAVSYRFVALSAVSSGLKEVRETLEEAKRLQKFGERTL 173

Query: 127 F-----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
                 H  N           +    +L+ A T   S+ +    L SR K  T+ K+   
Sbjct: 174 LLLDEIHRFNKAQLDVFLPCVEAGHIVLIGATTENPSFEINAA-LLSRCKVLTLNKLQP- 231

Query: 174 DDDFLEKVIVKMFADRQ---------------IFIDKKLAAYIVQRMERSLVFAEKLVDK 218
             D +  ++ +  +D++               I +++    ++    +     A   ++ 
Sbjct: 232 --DHIRSLLDRAISDKEKGLMVSLAGSAAEDVIKVEQDALEFLADAAD---GDARVALNT 286

Query: 219 MDNLALSR 226
           ++   L+ 
Sbjct: 287 LELAGLAA 294


>gi|145236695|ref|XP_001390995.1| AAA family ATPase [Aspergillus niger CBS 513.88]
 gi|134075456|emb|CAK48017.1| unnamed protein product [Aspergillus niger]
          Length = 783

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 529 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 568


>gi|115400277|ref|XP_001215727.1| hypothetical protein ATEG_06549 [Aspergillus terreus NIH2624]
 gi|114191393|gb|EAU33093.1| hypothetical protein ATEG_06549 [Aspergillus terreus NIH2624]
          Length = 1814

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 10/127 (7%)

Query: 5   KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS 64
            E Y    P +     P+   E+   ++    G  +DDL   S    A RLI+   S+  
Sbjct: 811 TEKYIQLDPGEADGQPPRIALEKATLAWGSPKGSYQDDL---SKDTDAFRLINIDVSFQV 867

Query: 65  RVV-ILVGPSGSGKSCLANIWSDK----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
             + I+ GP+GSGK+ L      +               S   + +D +   L+E +   
Sbjct: 868 GALNIITGPTGSGKTSLLMALLGEMKLLEGRVHLPGGTVSRSDLPVDPQTG-LIESV-AY 925

Query: 120 DFNDTQL 126
              +  L
Sbjct: 926 CAQEAWL 932


>gi|70951134|ref|XP_744832.1| ATPase [Plasmodium chabaudi chabaudi]
 gi|56524945|emb|CAH87902.1| ATPase, putative [Plasmodium chabaudi chabaudi]
          Length = 430

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P + ++L GP G+GK+ LA+  +++
Sbjct: 146 PYKGILLYGPPGTGKTFLASACANE 170


>gi|50812277|ref|YP_054590.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310712|ref|ZP_03592559.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315036|ref|ZP_03596841.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319957|ref|ZP_03601251.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324238|ref|ZP_03605532.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312302|ref|YP_004204589.1| Holliday junction DNA helicase RuvB [Bacillus subtilis BSn5]
 gi|3122842|sp|O32055|RUVB_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|6977806|emb|CAB75331.1| RuvB protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|32468806|emb|CAB14733.2| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|291485184|dbj|BAI86259.1| Holliday junction DNA helicase B [Bacillus subtilis subsp. natto
           BEST195]
 gi|320018576|gb|ADV93562.1| Holliday junction DNA helicase RuvB [Bacillus subtilis BSn5]
          Length = 334

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLASIVANEMGVELRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHR 115

Query: 127 FH 128
            H
Sbjct: 116 LH 117


>gi|148547567|ref|YP_001267669.1| carbohydrate kinase [Pseudomonas putida F1]
 gi|148511625|gb|ABQ78485.1| gluconate kinase [Pseudomonas putida F1]
          Length = 179

 Score = 38.6 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF- 121
           P   ++++G +G GKSC+    + +S        A      +      + L+D D   + 
Sbjct: 4   PLSAIVVMGVAGCGKSCIGAAIAARSGGRLIEGDAFHPAENIRKMSAGIPLDDSDRAGWL 63

Query: 122 ----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
                + Q      +  Q     ++T       +   L D
Sbjct: 64  VRLGEELQ------AATQAGERPILTCSALKRRYRDTLRD 97


>gi|300921074|ref|ZP_07137458.1| replication-associated recombination protein A [Escherichia coli MS
           115-1]
 gi|300411925|gb|EFJ95235.1| replication-associated recombination protein A [Escherichia coli MS
           115-1]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 34  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 89

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 90  ILFVDEVHRFNKSQQD 105


>gi|296331681|ref|ZP_06874150.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675360|ref|YP_003867032.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151276|gb|EFG92156.1| Holliday junction DNA helicase RuvB [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413604|gb|ADM38723.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 334

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLASIVANEMGVELRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHR 115

Query: 127 FH 128
            H
Sbjct: 116 LH 117


>gi|226467157|emb|CAX76059.1| Tat-binding protein 10 [Schistosoma japonicum]
 gi|226467161|emb|CAX76061.1| Tat-binding protein 10 [Schistosoma japonicum]
 gi|226467163|emb|CAX76062.1| Tat-binding protein 10 [Schistosoma japonicum]
          Length = 430

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 210 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 257


>gi|255639529|gb|ACU20059.1| unknown [Glycine max]
          Length = 418

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 197 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 244


>gi|261194156|ref|XP_002623483.1| 26S protease regulatory subunit 6A [Ajellomyces dermatitidis
           SLH14081]
 gi|239588497|gb|EEQ71140.1| 26S protease regulatory subunit 6A [Ajellomyces dermatitidis
           SLH14081]
          Length = 454

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 38/158 (24%)

Query: 72  PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------LED 115
           P G+GK+ LA   + ++ +T        L  + I     ++                +++
Sbjct: 242 PPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFIDE 301

Query: 116 IDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS 160
           +D +                  +  ++N        D   ++ A          L  L S
Sbjct: 302 LDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--LRS 359

Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            RL     ++  LP+++   +++      R++ +D  +
Sbjct: 360 GRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 393


>gi|225707392|gb|ACO09542.1| 26S protease regulatory subunit 7 [Osmerus mordax]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 369 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403


>gi|221215313|ref|ZP_03588278.1| ATPase, AAA family [Burkholderia multivorans CGD1]
 gi|221164745|gb|EED97226.1| ATPase, AAA family [Burkholderia multivorans CGD1]
          Length = 437

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 18/177 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
            IL GP G GK+ L  + +  + S   +  A       I         ++D    + T L
Sbjct: 50  FILWGPPGVGKTTLGRLAASATDSRFIAISAVLAGVKDIRQAIDEAQAELDNHGRS-TVL 108

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +     L+   T      V    L SR   A V  +    
Sbjct: 109 FVDEIHRFNKAQQDALLPHVESGLLTLVGGTTEHPGLAVNSA-LLSR---AQVYTLEPLS 164

Query: 175 DDFLEKVIVKMF-ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230
            D L ++  +     + + +D      +    +        L++++ N A   G  +
Sbjct: 165 SDELNQLYERALPHLQGVKLDADALDLLKGFADGDGRRFLNLLEQVTNAASGAGKTV 221


>gi|213692040|ref|YP_002322626.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254767412|sp|B7GR18|RUVB_BIFLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|213523501|gb|ACJ52248.1| Holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458152|dbj|BAJ68773.1| holliday junction DNA helicase RuvB [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 354

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 45/194 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P   ++L GP G GK+ LA I +++        S          +     +DT + + ++
Sbjct: 68  PPDHILLAGPPGLGKTTLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDTGEVLFID 127

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD---------------- 157
           +I  L     +L +I     +     +M  +     S  + LP                 
Sbjct: 128 EIHRLPRAAEELLYI---AMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSP 184

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMF----------ADRQIFI----DKKLAAYIVQ 203
           L +R      +     D+  L+K+I +            + R++ +      ++A  +++
Sbjct: 185 LRARFGFTAHLDFYPHDE--LQKLIERSANVLGVNLGDGSARELALRSRGTPRIANRLLR 242

Query: 204 RMERSLVFAEKLVD 217
           R+ R       L++
Sbjct: 243 RV-RDWAIVHDLIE 255


>gi|226492191|ref|NP_001142276.1| hypothetical protein LOC100274445 [Zea mays]
 gi|194707966|gb|ACF88067.1| unknown [Zea mays]
 gi|195638490|gb|ACG38713.1| 26S protease regulatory subunit 8 [Zea mays]
          Length = 422

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 201 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 248


>gi|217961889|ref|YP_002340459.1| recombination factor protein RarA [Bacillus cereus AH187]
 gi|229141136|ref|ZP_04269678.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26]
 gi|217063641|gb|ACJ77891.1| ATPase, AAA family [Bacillus cereus AH187]
 gi|228642414|gb|EEK98703.1| hypothetical protein bcere0013_42300 [Bacillus cereus BDRD-ST26]
          Length = 428

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 42  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 101

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 102 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 150

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D L   + +   D++       + +  +   +        +  A   ++         
Sbjct: 151 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 210

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 211 DDKAA-----EITLEIAEECLQK 228


>gi|134281823|ref|ZP_01768530.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|167908127|ref|ZP_02495332.1| hypothetical protein BpseN_38246 [Burkholderia pseudomallei NCTC
           13177]
 gi|134246885|gb|EBA46972.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
          Length = 460

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 34  RCLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
                + D ++V  A ++ A   +++      R +++ GP+GSGK+ LA       R   
Sbjct: 155 ADAHAAFDGIVVEPAMLDAAAASLNA-----GRPLLIYGPAGSGKTYLAERLGSLLRGNV 209

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLD 120
               A      +I    P++  D     
Sbjct: 210 PIPYAIYASGEVIKIHDPLVHVDAPRAA 237


>gi|124027677|ref|YP_001012997.1| ATPase [Hyperthermus butylicus DSM 5456]
 gi|123978371|gb|ABM80652.1| predicted ATPase [Hyperthermus butylicus DSM 5456]
          Length = 370

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
            WP R ++L GP G GK+ LA   +++     F+  A ++
Sbjct: 130 GWP-RGILLFGPPGCGKTMLAAAVANEVDGVFFNVDAATI 168


>gi|115918066|ref|XP_785648.2| PREDICTED: similar to Nuclear VCP-like [Strongylocentrotus
           purpuratus]
 gi|115960912|ref|XP_001195929.1| PREDICTED: similar to Nuclear VCP-like [Strongylocentrotus
           purpuratus]
          Length = 742

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
             ++L GP G GK+ LA   +++S     S     L ++ +   +  +
Sbjct: 568 PGILLAGPPGCGKTLLAKAIANESGINFISVKGPELMNMYVGESERAV 615



 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILID-------- 106
           P R V+L GP G GK+ LAN  + +        + +   S ++   +  + D        
Sbjct: 276 PPRGVLLHGPPGCGKTLLANAIAGELDLPYLKLAATEIVSGVSGESEENIRDLFEQAQAL 335

Query: 107 TRKPVLLEDIDLLD 120
               + +++ID + 
Sbjct: 336 APSVLFIDEIDAIT 349


>gi|112818458|gb|AAI22551.1| VCP protein [Homo sapiens]
          Length = 475

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 179 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 235


>gi|6752880|gb|AAF27916.1|AF220199_1 26S proteasome regulatory subunit 8 [Pinus taeda]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 212 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 259


>gi|115466174|ref|NP_001056686.1| Os06g0130000 [Oryza sativa Japonica Group]
 gi|52075628|dbj|BAD44799.1| putative spastin protein orthologue [Oryza sativa Japonica Group]
 gi|113594726|dbj|BAF18600.1| Os06g0130000 [Oryza sativa Japonica Group]
 gi|124361604|gb|ABN09244.1| putative spastin-like protein [Oryza sativa Japonica Group]
 gi|215687196|dbj|BAG91761.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767388|dbj|BAG99616.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197493|gb|EEC79920.1| hypothetical protein OsI_21482 [Oryza sativa Indica Group]
          Length = 487

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 26/150 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+R ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++          
Sbjct: 247 PARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLV---------- 296

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP---DLCSRLKAATVVKIS----LPDD 175
              LF     +       ++            L    D   RLK+  +++       PDD
Sbjct: 297 -RTLF----MVAVDRQPSVIFMDEIDSVMSARLANENDASRRLKSEFLIQFDGVTSNPDD 351

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
                VIV    ++   +D  +   +V+R+
Sbjct: 352 ----LVIVIGATNKPQELDDAVLRRLVKRI 377


>gi|51893425|ref|YP_076116.1| IS21 family transposase [Symbiobacterium thermophilum IAM 14863]
 gi|51857114|dbj|BAD41272.1| IS21 family transposase [Symbiobacterium thermophilum IAM 14863]
          Length = 209

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 24/144 (16%)

Query: 32  FPRCLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLAN----IWS 85
           FP    +   D  V  +  +  +  +        R  ++LVG SG+GK+ LA        
Sbjct: 18  FPVPKTLESFDFTVMPSVNKAKILALSKSEYIRDRENILLVGNSGTGKTHLATALGIAAC 77

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVL--LE----DIDLLDFND-----------TQLFH 128
            +    RF  + + +  +     +  L  LE      DL+  ++             LFH
Sbjct: 78  RQGYRVRFWRVGQFVAELQEAQNEHRLSRLEKQWLRFDLVVLDELGYVSLSRPASELLFH 137

Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152
            + +      SL++T       W 
Sbjct: 138 FV-AARYERGSLIITTNLEFSEWP 160


>gi|17385640|dbj|BAA87070.2| TAT-binding protein homolog [Matricaria chamomilla]
          Length = 414

 Score = 38.6 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 193 VLLYGPPGTGKTLLARAVAHHTDCAFIRVSGSELVQKYIGEGSRMVRE 240


>gi|325927614|ref|ZP_08188843.1| Recombination protein MgsA [Xanthomonas perforans 91-118]
 gi|325541981|gb|EGD13494.1| Recombination protein MgsA [Xanthomonas perforans 91-118]
          Length = 457

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 33/201 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G GK+ LA + +  + +     S +   L  +                    T
Sbjct: 62  MILWGPPGCGKTTLALLLAHYADAEFKAISAVLSGLPEVRQVLAGAAQ----RFAGGRRT 117

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q          ++L    T              L SR +   +  +
Sbjct: 118 VLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGV 174

Query: 171 SLPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
           S  D  +     +     A+R +      + +     I    +  +  A  L++    LA
Sbjct: 175 SPQDIVEALQRAL---RDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELA 231

Query: 224 LSRGMGITRSLAAEVLKETQQ 244
              G  IT     +VL +  +
Sbjct: 232 AGEGGEITPQTLLQVLADRTR 252


>gi|319654928|ref|ZP_08009002.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2]
 gi|317393353|gb|EFV74117.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2]
          Length = 663

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 45/198 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAAAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD    E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVKGREAVLKVHA--RNKPLDESVNLKSIAMRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGMG 229
           A  L + ++  AL     
Sbjct: 369 A-DLENLLNEAALVAARR 385


>gi|295691945|ref|YP_003600555.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus ST1]
 gi|295030051|emb|CBL49530.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus ST1]
          Length = 450

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL------EDI 116
           P    +L+GP+G GKS L  I +       +   A  L  ++    +   +      E  
Sbjct: 26  PHGFSLLIGPTGCGKSTLLKIIAG-----LYPKYAGRLTGMVDLHGQKAAMMFQNAAEQF 80

Query: 117 DLLDFNDTQLFHIINSIHQYDSS 139
            +    +  +F + N        
Sbjct: 81  TMPTPREEIVFALENLQLDEGEY 103


>gi|294790942|ref|ZP_06756100.1| ATPase, AAA family [Scardovia inopinata F0304]
 gi|294458839|gb|EFG27192.1| ATPase, AAA family [Scardovia inopinata F0304]
          Length = 506

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 27/141 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +IL GP G GK+ LA I + +S          ++  K L  +L    + ++         
Sbjct: 67  IILFGPPGVGKTTLAYIAARQSGRAFEELSAVTSGVKDLRQVLQRAHERLV------SQG 120

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 121 KETVLFIDEVHRFSKSQQDALLPSVENRDITFIGATTENPSFSIISP-LLSR---SVVVK 176

Query: 170 ISLPDDDFLEKVIVKMFADRQ 190
           +     D ++ ++++  A  Q
Sbjct: 177 LETLSADDIKAILLRALASEQ 197


>gi|294155533|ref|YP_003559917.1| Holliday junction DNA helicase [Mycoplasma crocodyli MP145]
 gi|291600218|gb|ADE19714.1| Holliday junction DNA helicase [Mycoplasma crocodyli MP145]
          Length = 314

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++  GP G+GK+ LA I +++  +      A ++D           +   D+L  ++   
Sbjct: 40  ILFYGPPGTGKTSLATIIANEQNAIIHYVQASNIDKKSDLVSILSTINHGDILFIDEV-- 97

Query: 127 FHIINSIHQY 136
            H +N + + 
Sbjct: 98  -HGLNKVIEE 106


>gi|290473946|ref|YP_003466820.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Xenorhabdus bovienii SS-2004]
 gi|289173253|emb|CBJ80028.1| putative polynucleotide enzyme with nucleotide triphosphate
           hydrolase domain [Xenorhabdus bovienii SS-2004]
          Length = 447

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 63/199 (31%), Gaps = 38/199 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I    +++   R S +   +  I     K       +      T
Sbjct: 53  MILWGPPGTGKTTLAEIIGHYAQADIERISAVTSGIKEIRESIEKASQ----NRNAGRRT 108

Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q        D ++     T              L SR   A V  +
Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162

Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKL----AAYIVQRMERSLVFAEKLVDKM 219
                  +E+V+ +   D  R      I +        A  +     RSL    +++  M
Sbjct: 163 KSLSAAEIEQVLFQAMNDKERGFGGQNIVLQDDTRQMAAELVAGDARRSLN-LLEMMSDM 221

Query: 220 DNLALSRGMGITRSLAAEV 238
                     +T  L  EV
Sbjct: 222 AEANAQGQRVLTPELLKEV 240


>gi|302876968|ref|YP_003845601.1| ABC transporter related [Clostridium cellulovorans 743B]
 gi|307687659|ref|ZP_07630105.1| ABC transporter related protein [Clostridium cellulovorans 743B]
 gi|302579825|gb|ADL53837.1| ABC transporter related [Clostridium cellulovorans 743B]
          Length = 227

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 16/61 (26%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V ++GPSGSGKS L ++                L  +   T   VL+++ D+   N+TQ
Sbjct: 35  FVAIIGPSGSGKSTLLHM----------------LGGVDKPTSGRVLIDNTDIYKLNETQ 78

Query: 126 L 126
           L
Sbjct: 79  L 79


>gi|219886375|gb|ACL53562.1| unknown [Zea mays]
          Length = 422

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 201 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 248


>gi|218290854|ref|ZP_03494918.1| IstB domain protein ATP-binding protein [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239121|gb|EED06323.1| IstB domain protein ATP-binding protein [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 206

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
              V+ L GP G GK+ LA     ++    +S     L  ++ D R+             
Sbjct: 44  AENVLFL-GPPGVGKTHLAVALGLEALRAGYSVYFSPLARLVEDLRRAYDERRLNVRMRP 102

Query: 111 ------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                 ++++++     +       F ++N+ ++   SL++T+      WG  L
Sbjct: 103 YLRPKLLIVDEVGYTKLDPVAANVFFQLVNARYERG-SLILTSNKSFGEWGELL 155


>gi|226505738|ref|NP_001140953.1| hypothetical protein LOC100273032 [Zea mays]
 gi|194701920|gb|ACF85044.1| unknown [Zea mays]
 gi|194708276|gb|ACF88222.1| unknown [Zea mays]
          Length = 422

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 201 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 248


>gi|168052699|ref|XP_001778777.1| 26S proteasome regulatory complex, ATPase RPT6 [Physcomitrella
           patens subsp. patens]
 gi|162669783|gb|EDQ56363.1| 26S proteasome regulatory complex, ATPase RPT6 [Physcomitrella
           patens subsp. patens]
          Length = 410

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 184 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 231


>gi|153938511|ref|YP_001390237.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|152934407|gb|ABS39905.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|295318331|gb|ADF98708.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str.
           230613]
          Length = 227

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 16/61 (26%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V ++GPSGSGKS L ++                +  +   T   VL+++ D+ + N+TQ
Sbjct: 35  FVAIIGPSGSGKSTLLHM----------------IGGVDRPTSGKVLVDNTDIYNLNETQ 78

Query: 126 L 126
           L
Sbjct: 79  L 79


>gi|147676533|ref|YP_001210748.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI]
 gi|146272630|dbj|BAF58379.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI]
          Length = 609

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 66/206 (32%), Gaps = 49/206 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GP G+GK+ LA   + ++    FS        + +                     
Sbjct: 194 VLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKNSPCI 253

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 254 VFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSPNEGIIILAATNRPDILDPAL 313

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD +  ++++      R   ID+ +    + +R       
Sbjct: 314 ------LRPGRFDRQVVVDAPDVNGRKEILKVHM--RGKPIDESVNLEVLARRTP-GFTG 364

Query: 212 AEKLVDKMDNLAL----SRGMGITRS 233
           A  L +  +  AL         IT +
Sbjct: 365 A-DLANLTNEAALLAARQNRKKITMA 389


>gi|91209937|ref|YP_539923.1| recombination factor protein RarA [Escherichia coli UTI89]
 gi|117623076|ref|YP_851989.1| recombination factor protein RarA [Escherichia coli APEC O1]
 gi|218557800|ref|YP_002390713.1| recombination factor protein RarA [Escherichia coli S88]
 gi|237707118|ref|ZP_04537599.1| recombination factor protein RarA [Escherichia sp. 3_2_53FAA]
 gi|91071511|gb|ABE06392.1| putative polynucleotide enzyme [Escherichia coli UTI89]
 gi|115512200|gb|ABJ00275.1| putative polynucleotide enzyme [Escherichia coli APEC O1]
 gi|218364569|emb|CAR02255.1| recombination protein [Escherichia coli S88]
 gi|226898328|gb|EEH84587.1| recombination factor protein RarA [Escherichia sp. 3_2_53FAA]
 gi|281178026|dbj|BAI54356.1| putative polynucleotide enzyme [Escherichia coli SE15]
 gi|294490173|gb|ADE88929.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           IHE3034]
 gi|307627678|gb|ADN71982.1| recombination factor protein RarA [Escherichia coli UM146]
 gi|320196612|gb|EFW71235.1| recombination factor protein RarA [Escherichia coli WV_060327]
 gi|323953398|gb|EGB49264.1| ATPase [Escherichia coli H252]
 gi|323958199|gb|EGB53908.1| ATPase [Escherichia coli H263]
          Length = 447

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|1841972|gb|AAC45211.1| unknown [Pseudomonas alcaligenes]
          Length = 219

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRK---------PVLLED 115
           V+L+G  G+GK+ LA   +    +R  +      ++D + +  R+            L  
Sbjct: 49  VVLIGGPGTGKTHLATALAVSGITRHGKRVRFYSTVDLVNLLEREKHDGKAGRIAQALLR 108

Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
           +DL+  ++             LFH+++ ++++ +S+++T       W 
Sbjct: 109 MDLVILDELGYLPFSQAGGALLFHLLSKLYEH-TSVVITTNLSFAEWS 155


>gi|54290174|dbj|BAD61062.1| putative p60 katanin [Oryza sativa Japonica Group]
 gi|222617709|gb|EEE53841.1| hypothetical protein OsJ_00317 [Oryza sativa Japonica Group]
          Length = 478

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 42/141 (29%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106
           P +  +L GP G+GKS LA   + +  ST FS                 +A        +
Sbjct: 141 PWKAFLLYGPPGTGKSYLAEAVATEVDSTFFSISSSDLVSKWMGESEKLVANLFQMAREN 200

Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152
               + +++ID L                    L  +    +  D  L++ A   P    
Sbjct: 201 APSIIFIDEIDSLCGQRGECNENEASRRIKTELLVQMQGFDNSNDKVLVLAATNMPHVLD 260

Query: 153 ------------VCLPDLCSR 161
                       + LPDL +R
Sbjct: 261 QAMRRRFDKCIYIPLPDLKAR 281


>gi|20807636|ref|NP_622807.1| Holliday junction DNA helicase B [Thermoanaerobacter tengcongensis
           MB4]
 gi|254478016|ref|ZP_05091400.1| Holliday junction DNA helicase RuvB [Carboxydibrachium pacificum
           DSM 12653]
 gi|22001975|sp|Q8RAN2|RUVB_THETN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|20516179|gb|AAM24411.1| Holliday junction resolvasome helicase subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|214036020|gb|EEB76710.1| Holliday junction DNA helicase RuvB [Carboxydibrachium pacificum
           DSM 12653]
          Length = 338

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 43/201 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA + S++           +++           L++ D+L  +
Sbjct: 51  PLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIERSGDLAAILTNLQENDILFID 110

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPD 174
           +    H +N   +    +L      P      L       P   S RL       I    
Sbjct: 111 EI---HRLNRSVEE---ILY-----PAMEDFELDIVIGKGPSARSIRLSLPKFTLIGA-- 157

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDK--------MDNLA-- 223
                 ++      R   I          R++  S+   ++++ +        +D  A  
Sbjct: 158 -TTRAALMTSPLRSRFGVI---------NRLDYYSVEELKEIIKRSANILNIGIDEDAAF 207

Query: 224 -LSRGMGITRSLAAEVLKETQ 243
            ++R    T  +A  +LK  +
Sbjct: 208 EIARRSRGTPRIANRLLKRVR 228


>gi|53723205|ref|YP_112190.1| hypothetical protein BPSS2188 [Burkholderia pseudomallei K96243]
 gi|76817362|ref|YP_336467.1| hypothetical protein BURPS1710b_A1310 [Burkholderia pseudomallei
           1710b]
 gi|126458340|ref|YP_001076987.1| hypothetical protein BURPS1106A_A2958 [Burkholderia pseudomallei
           1106a]
 gi|167744173|ref|ZP_02416947.1| hypothetical protein Bpse14_39238 [Burkholderia pseudomallei 14]
 gi|167821372|ref|ZP_02453052.1| hypothetical protein Bpse9_39998 [Burkholderia pseudomallei 91]
 gi|167829713|ref|ZP_02461184.1| hypothetical protein Bpseu9_38900 [Burkholderia pseudomallei 9]
 gi|167916474|ref|ZP_02503565.1| hypothetical protein Bpse112_38737 [Burkholderia pseudomallei 112]
 gi|167924330|ref|ZP_02511421.1| hypothetical protein BpseBC_37588 [Burkholderia pseudomallei
           BCC215]
 gi|217424172|ref|ZP_03455671.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
 gi|226193993|ref|ZP_03789594.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
           9]
 gi|242312580|ref|ZP_04811597.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
 gi|254265288|ref|ZP_04956153.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
 gi|254296483|ref|ZP_04963939.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|52213619|emb|CAH39673.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|76581835|gb|ABA51309.1| conserved hypothetical protein [Burkholderia pseudomallei 1710b]
 gi|126232108|gb|ABN95521.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a]
 gi|157806523|gb|EDO83693.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|217392637|gb|EEC32660.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
 gi|225933938|gb|EEH29924.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
           9]
 gi|242135819|gb|EES22222.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
 gi|254216290|gb|EET05675.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
          Length = 460

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 34  RCLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
                + D ++V  A ++ A   +++      R +++ GP+GSGK+ LA       R   
Sbjct: 155 ADAHAAFDGIVVEPAMLDAAAASLNA-----GRPLLIYGPAGSGKTYLAERLGSLLRGNV 209

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLD 120
               A      +I    P++  D     
Sbjct: 210 PIPYAIYASGEVIKIHDPLVHVDAPRAA 237


>gi|85079318|ref|XP_956329.1| hypothetical protein NCU04348 [Neurospora crassa OR74A]
 gi|28917388|gb|EAA27093.1| hypothetical protein NCU04348 [Neurospora crassa OR74A]
          Length = 1160

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 53  VRLIDSWPSWPSRVVI-LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           V  +D  P  P   ++ +VGP G GK+ L   +  +       +    +  +    ++  
Sbjct: 58  VPAVDRLPDEPPPRLVAIVGPPGVGKTTLLKSFIRRYAKETIQDPVGPITVVTSKKQRLT 117

Query: 112 LLE 114
            +E
Sbjct: 118 FIE 120


>gi|332019605|gb|EGI60083.1| 26S protease regulatory subunit 7 [Acromyrmex echinatior]
          Length = 434

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 268

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 329 DPALMRPGRLDRKIEFGLPDLEGR 352


>gi|326509267|dbj|BAJ91550.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 840

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   +++++++  +
Sbjct: 564 PCRGILLFGPPGTGKTMLAKAIANEAQASFIN 595


>gi|325496837|gb|EGC94696.1| recombination factor protein RarA [Escherichia fergusonii ECD227]
          Length = 447

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|312213191|emb|CBX93273.1| similar to AAA ATPase central domain protein [Leptosphaeria
           maculans]
          Length = 541

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 21/172 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             ++L G  G+GK+ +A + ++ S +      + S     +         D+  L    T
Sbjct: 159 PSMVLWGRPGTGKTTIARLIANTSGARYVEINSTSTKLEQVRKIFAEAASDL-QLTGRKT 217

Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
            +F    H  +           +  +  L+ A T   S+ V    L SR +  T+  +  
Sbjct: 218 IVFCDELHRFSKTQQDAFLGPVESGTITLIAATTENPSFKVISA-LLSRCRTFTLDDLKE 276

Query: 173 PDDDFLEKVIVKMFADRQIF--IDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
             DD +  +   + ++      +D+ +  Y  Q  +     A   ++ +D  
Sbjct: 277 --DDLVRILERALASENCTSPLLDRSMLTYFAQFSD---GDARTALNLLDLA 323


>gi|302836043|ref|XP_002949582.1| hypothetical protein VOLCADRAFT_74263 [Volvox carteri f.
           nagariensis]
 gi|300264941|gb|EFJ49134.1| hypothetical protein VOLCADRAFT_74263 [Volvox carteri f.
           nagariensis]
          Length = 435

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P   ++L GP G+GKS LA   + ++ ST FS  ++ L S  +   + ++
Sbjct: 160 PWSGILLYGPPGTGKSYLAKAVATEADSTFFSISSQDLVSKWLGESEKLV 209


>gi|298250644|ref|ZP_06974448.1| Microtubule-severing ATPase [Ktedonobacter racemifer DSM 44963]
 gi|297548648|gb|EFH82515.1| Microtubule-severing ATPase [Ktedonobacter racemifer DSM 44963]
          Length = 443

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           ++L GP G GK+ LA   + +  +   +     +  + I   +
Sbjct: 202 ILLYGPPGCGKTFLARATAGECNARFINIAIDDILDMYIGNSE 244


>gi|289740279|gb|ADD18887.1| 26S proteasome regulatory complex ATPase RPT1 [Glossina morsitans
           morsitans]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 328 DPALMRPGRLDRKVEFGLPDLEGR 351


>gi|302381982|ref|YP_003817805.1| ATP-dependent metalloprotease FtsH [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192610|gb|ADL00182.1| ATP-dependent metalloprotease FtsH [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 646

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 ALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 257

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++     +  +L+ A   P      L
Sbjct: 258 IFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD    E+++     D  + +   +    + R       A
Sbjct: 318 ------LRPGRFDRQVVVPNPDVSGRERILRVHMKD--VPLAADVNVKTIARGTPGFSGA 369

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 370 -DLANLVNEAALMAARK 385


>gi|260893477|ref|YP_003239574.1| Holliday junction DNA helicase RuvB [Ammonifex degensii KC4]
 gi|260865618|gb|ACX52724.1| Holliday junction DNA helicase RuvB [Ammonifex degensii KC4]
          Length = 347

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 80/243 (32%), Gaps = 29/243 (11%)

Query: 23  NKEEQLFFSFPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKS 78
            +E Q  F          ++ +    V  A+  A          P   V+L GP G GK+
Sbjct: 14  EEERQ--FELSLRPRR-LEEFVGQEKVKEALRIACEAARRRRE-PLDHVLLSGPPGLGKT 69

Query: 79  CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH------IINS 132
            LA I + +           +++           L   D+L  ++    H      +  +
Sbjct: 70  TLARIIAAEMGVNVRVTSGPAIERPGDLAAILTSLSPGDVLFIDEIHRLHRAVEEILYPA 129

Query: 133 IHQYDSSLLMTARTFPVSWGVCLPD------------LCS--RLKAATVVKISLPDDDFL 178
           +      L++       +  + LP             L S  R +      +       L
Sbjct: 130 MEDRALDLVIGKGPGARAVRLSLPPFTLVGATTRMGLLSSPLRDRFGLAFHLEYYSPAEL 189

Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAE 237
           E+++ +      I +  + AA I +R   +   A +L+ ++ D + +     IT   A E
Sbjct: 190 ERILERTADILGIKLLPEGAAVIARRARGTPRVAIRLLRRVRDYVEVKAEGIITEEAAVE 249

Query: 238 VLK 240
            L 
Sbjct: 250 ALD 252


>gi|256545113|ref|ZP_05472479.1| Holliday junction DNA helicase RuvB [Anaerococcus vaginalis ATCC
           51170]
 gi|256399154|gb|EEU12765.1| Holliday junction DNA helicase RuvB [Anaerococcus vaginalis ATCC
           51170]
          Length = 336

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L+NI +++           +++           L+  D+L  ++   
Sbjct: 59  VLLQGPPGLGKTTLSNIIANELGVNIRITSGPAIERPSDLASILTNLDKGDVLFIDEI-- 116

Query: 127 FHIINSIHQY 136
            H IN   + 
Sbjct: 117 -HRINRSVEE 125


>gi|255723526|ref|XP_002546696.1| 26S protease regulatory subunit 4 [Candida tropicalis MYA-3404]
 gi|240130570|gb|EER30134.1| 26S protease regulatory subunit 4 [Candida tropicalis MYA-3404]
          Length = 441

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 219 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 268


>gi|238061363|ref|ZP_04606072.1| microtubule-severing ATPase [Micromonospora sp. ATCC 39149]
 gi|237883174|gb|EEP72002.1| microtubule-severing ATPase [Micromonospora sp. ATCC 39149]
          Length = 755

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GP G GK+ L    +   R+   S     L S  +   +  + E        
Sbjct: 525 PPRGVLLYGPPGCGKTYLVTALAGSGRANVLSVKGAELLSKWVGESERAVRE-------- 576

Query: 123 DTQLFHIINSIHQYDSSLLM 142
                 +     +   +L+ 
Sbjct: 577 ------LFRRAREAAPTLIF 590



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 30/154 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILIDTRKP 110
           V++ GP+GSGKS L    + +  +      A  L +                +  +    
Sbjct: 276 VLVAGPAGSGKSALVRAVAARVGARVRPLWAPELAALTNDAAARRLRAAADDVRGNGPAV 335

Query: 111 VLLEDIDLLDFNDTQ--LFHIINSIHQ----YDSSLLMTARTFPVSWG-VCLPDLCSRLK 163
           +L+ D++ L   D    +  +   +         +++ T          +  PDL S   
Sbjct: 336 LLVTDVEALAPADDAGPVSTVFRQVLAETVRAGVAVVCTTSRPEAVDPGLRAPDLLS--- 392

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
               + + LPD     + +  +   RQ+ + + +
Sbjct: 393 --LRITVPLPDQALRREQLTVL--TRQVPLAEDV 422


>gi|241952505|ref|XP_002418974.1| 26s protease regulatory subunit, putative; ATPase subunit of
           proteasome [Candida dubliniensis CD36]
 gi|223642314|emb|CAX42556.1| 26s protease regulatory subunit, putative [Candida dubliniensis
           CD36]
          Length = 441

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 219 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 268


>gi|189439859|ref|YP_001954940.1| DNA replication protein [Bifidobacterium longum DJO10A]
 gi|189428294|gb|ACD98442.1| DNA replication protein [Bifidobacterium longum DJO10A]
          Length = 261

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 22/112 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108
           ++L GP G+GKS LA      +          +   +L                  I   
Sbjct: 117 LVLYGPVGAGKSHLAIAIGRLACERGVPVRFFTATGLLMRLRRAQQENRLDRELASIGKA 176

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           + +++++   L  ++     LF II+  ++   S++ T       WG  L D
Sbjct: 177 RLLIIDEFGYLPIDEEGSRLLFQIISDSYET-RSIIYTTNIEFSGWGRVLGD 227


>gi|251797284|ref|YP_003012015.1| ATPase AAA [Paenibacillus sp. JDR-2]
 gi|247544910|gb|ACT01929.1| AAA ATPase central domain protein [Paenibacillus sp. JDR-2]
          Length = 318

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 29/114 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
               ++L GP G GK+ LA   + +  +       +++ S+ +   +             
Sbjct: 71  AGGSLLLFGPPGCGKTFLARAVAGEIDANFIHIELQAILSMYVGQSEHNLHDVFQKAREN 130

Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160
               + ++++D +  +  Q+        Q+   +L+            L  L S
Sbjct: 131 KPCVIFIDELDAMGGSRHQM-------RQHHERMLV------NQLLTELDGLQS 171


>gi|50418765|ref|XP_457903.1| DEHA2C04972p [Debaryomyces hansenii CBS767]
 gi|49653569|emb|CAG85953.1| DEHA2C04972p [Debaryomyces hansenii]
          Length = 433

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 211 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 260


>gi|58377204|ref|XP_309476.2| AGAP011174-PA [Anopheles gambiae str. PEST]
 gi|55244811|gb|EAA05145.2| AGAP011174-PA [Anopheles gambiae str. PEST]
          Length = 434

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 268

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 329 DPALMRPGRLDRKVEFGLPDLEGR 352


>gi|67539154|ref|XP_663351.1| hypothetical protein AN5747.2 [Aspergillus nidulans FGSC A4]
 gi|40743650|gb|EAA62840.1| hypothetical protein AN5747.2 [Aspergillus nidulans FGSC A4]
          Length = 339

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIRE 221


>gi|186684974|ref|YP_001868170.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
 gi|186467426|gb|ACC83227.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102]
          Length = 613

 Score = 38.6 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKTNAPCI 253

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 254 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 313

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD     +++      R   + K +    I +R       
Sbjct: 314 ------LRPGRFDRQVVVDRPDYAGRSEILKVHA--RGKTLAKDVDLDKIARRTP-GFTG 364

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 365 A-DLSNLLNEAAILAARRNLT 384


>gi|332967839|gb|EGK06938.1| replication-associated recombination protein A [Kingella kingae
           ATCC 23330]
          Length = 435

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 72/195 (36%), Gaps = 24/195 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L G  G GK+ LA I +    +      A    S + D R+ +   +I       T L
Sbjct: 50  MLLWGSPGIGKTTLARIVAQGFGAQFLPLSAVF--SGVKDIREAIQKAEIAWQHGQRTIL 107

Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           F    H  N   Q D+ L      L+T   A T   S+ V  P L SR   A V  +   
Sbjct: 108 FVDEVHRFNKSQQ-DAFLPYVENGLITFIGATTENPSFEVN-PALLSR---AQVYVLKSL 162

Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMG 229
           D   L  ++ K+ A         D    + +++  +          +++   A + +   
Sbjct: 163 DKSSLHLLLDKVRALPEFSAFHWDDDAPSLLIESADGDARRFLNNAEQIGRAATMRQQNT 222

Query: 230 ITRSLAAEVLKETQQ 244
           IT    A+ L E  +
Sbjct: 223 ITAQFIAQTLGEQVR 237


>gi|332292456|ref|YP_004431065.1| AAA ATPase central domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170542|gb|AEE19797.1| AAA ATPase central domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 425

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 24/149 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109
             +IL GP G GK+ LA I S++S                     + AK    +      
Sbjct: 40  PSLILWGPPGIGKTTLATIISEESNRPFYTLSAINSGVKDIRDVIDKAKQSGGLFTQKNP 99

Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
            + +++I     +    L        +     L+ A T   S+ V +P L SR     V 
Sbjct: 100 ILFIDEIHRFSKSQQDSLL----GAVERGWVTLIGATTENPSFEV-IPALLSR---CQVY 151

Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKL 197
            +   D   LE ++ +   +  I   K +
Sbjct: 152 ILKPFDKKDLELLLNRAITEDSILKKKDI 180


>gi|300690797|ref|YP_003751792.1| Replication-associated recombination protein A [Ralstonia
           solanacearum PSI07]
 gi|299077857|emb|CBJ50495.2| Replication-associated recombination protein A [Ralstonia
           solanacearum PSI07]
          Length = 436

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 39/191 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113
           +IL GP G GK+ LA + +D   +   +              + ++        R  V +
Sbjct: 40  MILWGPPGVGKTTLARLMADAFDAEFIALSAVLSGVKDIREAVERAEQFRAHGRRTLVFV 99

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           +++   + +    F       +      + A T   S+ V    L SR   A V  +   
Sbjct: 100 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKSL 152

Query: 174 DDDFLEKVIVKMFADRQ------IFIDKKLAAY------------IVQRMERSLVFAEKL 215
            DD L+++  +   +          +D  +A+             IV R  RS       
Sbjct: 153 SDDELKQLAERARQELGGLEWTPTALDAVVASADGDGRKLLNNIEIVTRAARSQAG-GDA 211

Query: 216 VDKMDNLALSR 226
           V  +D   L+ 
Sbjct: 212 VPTIDEALLAS 222


>gi|297527148|ref|YP_003669172.1| AAA ATPase central domain protein [Staphylothermus hellenicus DSM
           12710]
 gi|297256064|gb|ADI32273.1| AAA ATPase central domain protein [Staphylothermus hellenicus DSM
           12710]
          Length = 379

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
            WP  ++ L GP G GK+ +A   +++  +T  +    ++
Sbjct: 135 GWPKGIL-LFGPPGCGKTLVAYALANEINATLINVSPATI 173


>gi|288927100|ref|ZP_06420988.1| ATPase, AAA family [Prevotella buccae D17]
 gi|288336127|gb|EFC74520.1| ATPase, AAA family [Prevotella buccae D17]
          Length = 419

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 38/201 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-----------LIDTRKPVL- 112
            IL GP G GK+ LA I +++  +     S +   +  +             D+  P+L 
Sbjct: 41  FILWGPPGVGKTTLAQIIANRLKTPFYTLSAVTSGVKDVREVIERAGRNRFFDSLSPILF 100

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +     L+ A T   S+ V  P L SR     +  + 
Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEKGVVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152

Query: 172 LPDDDFLEKVIVK--------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
             + + L +++ +           D ++     L  Y       S   A KL++ ++ + 
Sbjct: 153 PLEKEDLLRLLHRAVTEDTELRKRDIRLTQTDALLRY-------SGGDARKLLNILELVV 205

Query: 224 LSRGMGITRSLAAEVLKETQQ 244
            + G   T  +   +++E  Q
Sbjct: 206 EACGDAPTVEITDRLVEERLQ 226


>gi|282878037|ref|ZP_06286845.1| endonuclease family protein [Prevotella buccalis ATCC 35310]
 gi|281299872|gb|EFA92233.1| endonuclease family protein [Prevotella buccalis ATCC 35310]
          Length = 893

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 6/25 (24%), Positives = 14/25 (56%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST 91
           ++L G  G+GK+ +A   + +  + 
Sbjct: 493 LVLTGAPGTGKTHMAQEIAAEMGAV 517


>gi|302418882|ref|XP_003007272.1| spastin [Verticillium albo-atrum VaMs.102]
 gi|261354874|gb|EEY17302.1| spastin [Verticillium albo-atrum VaMs.102]
          Length = 1032

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           +L GP G+GK+ LA   + +S ++       S++ + +   +
Sbjct: 761 LLYGPPGTGKTLLAKAVAKESGASMLEVSGASINDMYVGQSE 802


>gi|227542927|ref|ZP_03972976.1| hypothetical protein HMPREF0293_2246 [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181149|gb|EEI62121.1| hypothetical protein HMPREF0293_2246 [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 1168

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L G  G+GK+ +A    D        ++   LD +L  T K V+++D      +   L
Sbjct: 187 LVLFGVPGAGKTHVAGELEDSYFLNEIYDVNLLLDDLLEATPKYVVVDDAGARSRDIEAL 246

Query: 127 FHIINSIHQYDSSLLMT 143
             +     +     ++T
Sbjct: 247 LQL--RAQERLRFQIVT 261


>gi|225165789|ref|ZP_03727575.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
 gi|224799965|gb|EEG18408.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
          Length = 279

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           P   V LVGPSG GKS L  I +   R+T  S      +    DTR   + +D +L  +
Sbjct: 53  PGEFVSLVGPSGCGKSTLLRIVAGLERATSGSVRLGEREVTGPDTRVGFVFQDPNLFPW 111


>gi|222424562|dbj|BAH20236.1| AT5G42270 [Arabidopsis thaliana]
          Length = 510

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 93  LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 139


>gi|218198492|gb|EEC80919.1| hypothetical protein OsI_23597 [Oryza sativa Indica Group]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 202 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 249


>gi|146414351|ref|XP_001483146.1| hypothetical protein PGUG_05101 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 522

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 300 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 349


>gi|119512548|ref|ZP_01631626.1| cell division protein [Nodularia spumigena CCY9414]
 gi|119462809|gb|EAW43768.1| cell division protein [Nodularia spumigena CCY9414]
          Length = 612

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKTNAPCI 252

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 253 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 312

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD     +++      R   + K +    I +R       
Sbjct: 313 ------LRPGRFDRQVVVDRPDYAGRSEILKVHA--RGKTLAKDVDLDKIARRTP-GFTG 363

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 364 A-DLSNLLNEAAILAARRNLT 383


>gi|11993907|gb|AAG42150.1| 26S proteasome RPT6a subunit [Dactylis glomerata]
          Length = 452

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 231 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 278


>gi|115468800|ref|NP_001057999.1| Os06g0600100 [Oryza sativa Japonica Group]
 gi|50725031|dbj|BAD32833.1| putative 26S proteasome regulatory particle triple-A ATPase
           subunit6 [Oryza sativa Japonica Group]
 gi|50725483|dbj|BAD32954.1| putative 26S proteasome regulatory particle triple-A ATPase
           subunit6 [Oryza sativa Japonica Group]
 gi|113596039|dbj|BAF19913.1| Os06g0600100 [Oryza sativa Japonica Group]
 gi|215686740|dbj|BAG89590.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222635839|gb|EEE65971.1| hypothetical protein OsJ_21883 [Oryza sativa Japonica Group]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 202 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 249


>gi|71987364|ref|NP_001022113.1| proteasome Regulatory Particle, ATPase-like family member (rpt-4)
           [Caenorhabditis elegans]
 gi|21264496|sp|O17071|PRS10_CAEEL RecName: Full=Probable 26S protease regulatory subunit 10B;
           AltName: Full=26S proteasome AAA-ATPase subunit rpt-4;
           AltName: Full=Proteasome regulatory particle ATPase-like
           protein 4
 gi|15617798|gb|AAB70326.2| Proteasome regulatory particle, atpase-like protein 4, isoform a
           [Caenorhabditis elegans]
          Length = 406

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ ++    I     ++ E        
Sbjct: 183 PPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIRE-------- 234

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 235 ------MFNYARDHQ 243


>gi|126444559|ref|YP_001064074.1| hypothetical protein BURPS668_A3083 [Burkholderia pseudomallei 668]
 gi|167725245|ref|ZP_02408481.1| hypothetical protein BpseD_39866 [Burkholderia pseudomallei DM98]
 gi|167851180|ref|ZP_02476688.1| hypothetical protein BpseB_38431 [Burkholderia pseudomallei B7210]
 gi|254182585|ref|ZP_04889179.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|254187136|ref|ZP_04893651.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254192565|ref|ZP_04899004.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|126224050|gb|ABN87555.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
 gi|157934819|gb|EDO90489.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169649323|gb|EDS82016.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|184213120|gb|EDU10163.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
          Length = 460

 Score = 38.6 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 34  RCLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
                + D ++V  A ++ A   +++      R +++ GP+GSGK+ LA       R   
Sbjct: 155 ADAHAAFDGIVVEPAMLDAAAASLNA-----GRPLLIYGPAGSGKTYLAERLGSLLRGNV 209

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLLD 120
               A      +I    P++  D     
Sbjct: 210 PIPYAIYASGEVIKIHDPLVHVDAPRAA 237


>gi|302769330|ref|XP_002968084.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii]
 gi|300163728|gb|EFJ30338.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii]
          Length = 857

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 29/164 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P R V+LVGP G+GK+ LA   + ++     S  A     + +                 
Sbjct: 400 PPRGVLLVGPPGTGKTLLAKAVAGEASVPFISCSASEFVELYVGMGASRVRELFARAKKN 459

Query: 111 ----VLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMT-------ART-----FPVSWGV 153
               V +++ID +    D +L  + N   +   + L+T       A T           V
Sbjct: 460 APSIVFIDEIDAVAKGRDGRLRSVSNDEREQTLNQLLTELDGFESASTVIVIGATNRADV 519

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
             P L    +   +V +  PD    E+++      + + + K +
Sbjct: 520 LDPALRRPGRFDRIVMVEPPDRQGREEILNVHVTKKGLPLSKDV 563


>gi|297243665|ref|ZP_06927596.1| ABC-type transporter, ATPase [Gardnerella vaginalis AMD]
 gi|296888416|gb|EFH27157.1| ABC-type transporter, ATPase [Gardnerella vaginalis AMD]
          Length = 654

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 14/77 (18%)

Query: 69  LVGPSGSGKSCLANIWSDK---------SRSTRFSNI-AKSLDSILIDTRKPVLLEDID- 117
           ++GPSGSGK+ LA+++S             + R +     +L+   I      +++DID 
Sbjct: 85  IIGPSGSGKTTLASLFSGAIPHHYSGKFFGTVRIAGHDTTTLELTNIACLIGSVIQDIDA 144

Query: 118 ---LLDFNDTQLFHIIN 131
                +  D  LF + N
Sbjct: 145 QMVAANVEDELLFGLEN 161


>gi|296185108|ref|ZP_06853518.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
 gi|296049942|gb|EFG89366.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans
           P7]
          Length = 491

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           +IL GP G+GK+ LA   + ++ S    
Sbjct: 101 IILYGPPGTGKTLLAKALAGETGSEFIP 128


>gi|294085870|ref|YP_003552630.1| cell division protein ftsH [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665445|gb|ADE40546.1| cell division protein ftsH [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 636

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 49/206 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 189 VLLVGPPGTGKTLLAKAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCI 248

Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGV 153
           + +++ID +            ++ +    +N +          +  +L+ A   P     
Sbjct: 249 IFIDEIDAVGRHRGAGLGGGNDERE--QTLNQMLVEMDGFEANEGVILIAATNRPDVLDP 306

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    EK++      R+  + + +   I+ R      
Sbjct: 307 AL------LRPGRFDRQVVVPNPDVMGREKILKVHM--RKTPLAEGVEPRIIARGTPGFS 358

Query: 211 FAEKLVDKMDNLAL--SRGMGITRSL 234
            A  L + ++  AL  +R    T S+
Sbjct: 359 GA-DLANLVNEAALLAARKGRRTVSM 383


>gi|291281895|ref|YP_003498713.1| Replication-associated recombination protein A [Escherichia coli
           O55:H7 str. CB9615]
 gi|290761768|gb|ADD55729.1| Replication-associated recombination protein A [Escherichia coli
           O55:H7 str. CB9615]
          Length = 447

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|290960008|ref|YP_003491190.1| ATP/GTP-binding protein [Streptomyces scabiei 87.22]
 gi|260649534|emb|CBG72649.1| putative ATP/GTP-binding protein [Streptomyces scabiei 87.22]
          Length = 492

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 58/199 (29%), Gaps = 42/199 (21%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLF--FSFPRCLGISRD--------DLLVHSAIEQAVRLI 56
            +   +PD ++    +    QL      P      +         +         A+  +
Sbjct: 125 GWDILIPDPREVCWRRT---QLTGELPLPAKDTDGKGIDQLMRLCNFANAETECLAIAWL 181

Query: 57  --DSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
                PS P     L GP G+GKS     L  I    S   R +   +      +     
Sbjct: 182 IGCLGPSVPVPAPFLTGPQGAGKSTGGRMLVRIIEGMSGDLRRAPKDEENLIAAVAAGWV 241

Query: 111 VLLEDIDLLDFN---------------DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVC 154
             L+++  +  +                  LF   +         LL+T     +  GV 
Sbjct: 242 TALDNLSHMTPDLSDAMCCIVTGAESVKRALFTDGDVFRARYRRPLLLTG----IDVGVI 297

Query: 155 LPDLCSRLKAATVVKISLP 173
            PDL  RL     +++  P
Sbjct: 298 RPDLAERL---LPLRLERP 313


>gi|260437053|ref|ZP_05790869.1| holliday junction DNA helicase RuvB [Butyrivibrio crossotus DSM
           2876]
 gi|292810362|gb|EFF69567.1| holliday junction DNA helicase RuvB [Butyrivibrio crossotus DSM
           2876]
          Length = 333

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHI 129
            GP G GK+ LA + + +           +++           L D D+L  ++    H 
Sbjct: 59  YGPPGLGKTTLAGVIAAEMGVNIKVTSGPTIEKPGDMAAILNNLSDGDILFIDEI---HR 115

Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF-----LEKVIVK 184
           +N   +    +L      P      +  +  + + A  +++ LP            ++  
Sbjct: 116 LNRQVEE---VLY-----PAMEDFAIDIMIGKGQTARSIRLDLPHFTLVGATTRAGLLTA 167

Query: 185 MFADRQIFIDK---KLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLK 240
              DR   +++        +   + RS    +  +DK D    L+R    T  LA  +LK
Sbjct: 168 PLRDRFGVVNRLEYYTIDELKNIIIRSAGVLKAPIDK-DGATELARRSRGTPRLANRLLK 226

Query: 241 ETQ 243
             +
Sbjct: 227 RVR 229


>gi|255525864|ref|ZP_05392792.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
 gi|255510428|gb|EET86740.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7]
          Length = 595

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           +IL GP G+GK+ LA   + ++ S    
Sbjct: 205 IILYGPPGTGKTLLAKALAGETGSEFIP 232


>gi|254171848|ref|ZP_04878524.1| katanin p60 ATPase-containing subunit [Thermococcus sp. AM4]
 gi|214033744|gb|EEB74570.1| katanin p60 ATPase-containing subunit [Thermococcus sp. AM4]
          Length = 401

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97
           P + ++L GP G+GK+ LA+  +    +T FS  A
Sbjct: 151 PWKGILLFGPPGTGKTLLASAAAGSLNATFFSVKA 185


>gi|162147879|ref|YP_001602340.1| IstB-like ATP-binding protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786456|emb|CAP56038.1| putative IstB-like ATP-binding protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 218

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 26/145 (17%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANI------ 83
           FP    ++  D       E  VR +     +  R   V+L+G  G+GK+ LA        
Sbjct: 69  FPAYKDLAGFDFSAAEVNEAMVRQL-HAGDFIDRADNVVLIGGPGTGKTHLATALPCKAI 127

Query: 84  --WSDKSRSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLF 127
                K R     ++  +L+      R   + E    +DL+  ++             LF
Sbjct: 128 EHHRKKIRFWSTVDLVYALEQEKTANRAGQIAERLVRLDLVILDELGYLPFSASVGALLF 187

Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152
           H+++ +++  +S+++ +      WG
Sbjct: 188 HLLSRLYER-TSVIIASNLSFSEWG 211


>gi|77993700|gb|ABB13463.1| 26S proteasome subunit RPT6 [Schistosoma mansoni]
          Length = 382

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 162 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 209


>gi|164427105|ref|XP_959602.2| hypothetical protein NCU02420 [Neurospora crassa OR74A]
 gi|157071610|gb|EAA30366.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 757

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL
Sbjct: 607 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSL 644


>gi|147669015|ref|YP_001213833.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. BAV1]
 gi|146269963|gb|ABQ16955.1| membrane protease FtsH catalytic subunit [Dehalococcoides sp. BAV1]
          Length = 604

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 191 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKN 246


>gi|115402109|ref|XP_001217131.1| ribosome biogenesis ATPase RIX7 [Aspergillus terreus NIH2624]
 gi|114188977|gb|EAU30677.1| ribosome biogenesis ATPase RIX7 [Aspergillus terreus NIH2624]
          Length = 514

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P R V+L GP G GK+ +AN ++ +      S  A S+ S +    +  L E  +  
Sbjct: 143 PPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEA 199


>gi|54287934|gb|AAV31414.1| 26S protease regulatory subunit-like protein [Toxoptera citricida]
          Length = 437

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 212 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 271

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 272 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 331

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 332 DPALMRPGRLDRKVEFGLPDLEGR 355


>gi|27735425|gb|AAH41186.1| Psmc2 protein [Xenopus laevis]
          Length = 444

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 219 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 278

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 279 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 338

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 339 DPALMRPGRLDRKIEFSLPDLEGR 362


>gi|54301896|ref|YP_131889.1| DNA-binding transcriptional regulator DhaR [Photobacterium
           profundum SS9]
 gi|46915316|emb|CAG22089.1| hypothetical Glycerol metabolism operon regulatory protein
           [Photobacterium profundum SS9]
          Length = 651

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 34/132 (25%)

Query: 35  CLGISRDDLLVHSAIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--- 89
              ++ DD +V  +      VR           V+ L G  G GKS LA    + S    
Sbjct: 337 RARLTFDD-IVGGSDAMLRVVRQARHAAKGRGPVL-LHGEDGIGKSHLAQAIHNGSDRHG 394

Query: 90  ----------------STRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN-DTQLF 127
                           ++ F   A   D        +     + L+ ++ L       L 
Sbjct: 395 QPFIAINCQAIPKELMASEFLGSALESDHTSVSKFELANGGTLFLDQVECLSSEVQAALL 454

Query: 128 H-----IINSIH 134
           H     +IN ++
Sbjct: 455 HLLKTGLINRMN 466


>gi|15790867|ref|NP_280691.1| proteasome-activating nucleotidase [Halobacterium sp. NRC-1]
 gi|169236613|ref|YP_001689813.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
 gi|20532214|sp|Q9HNP9|PAN2_HALSA RecName: Full=Proteasome-activating nucleotidase 2; Short=PAN 2;
           AltName: Full=Proteasomal ATPase 2; AltName:
           Full=Proteasome regulatory ATPase 2; AltName:
           Full=Proteasome regulatory particle 2
 gi|10581432|gb|AAG20171.1| ATP-dependent 26S proteinase regulatory subunit 4 homolog
           [Halobacterium sp. NRC-1]
 gi|167727679|emb|CAP14467.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
          Length = 411

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ ++        L    I     ++ +  +L +  
Sbjct: 185 PPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFELAEQK 244

Query: 123 DTQL 126
           D  +
Sbjct: 245 DPAI 248


>gi|77409126|ref|ZP_00785840.1| ATPase, AAA family [Streptococcus agalactiae COH1]
 gi|77172254|gb|EAO75409.1| ATPase, AAA family [Streptococcus agalactiae COH1]
          Length = 422

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  +        +T      + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++    ++ 
Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++K I    +D  R     + ID     +IV      L  A   +D
Sbjct: 155 IKKAIQLAISDKERGFPFLVTIDDGALDFIVTATNGDLRSAYNSLD 200


>gi|193064678|ref|ZP_03045757.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E22]
 gi|194428364|ref|ZP_03060905.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B171]
 gi|218553478|ref|YP_002386391.1| recombination factor protein RarA [Escherichia coli IAI1]
 gi|260843142|ref|YP_003220920.1| recombination protein [Escherichia coli O103:H2 str. 12009]
 gi|192927735|gb|EDV82350.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E22]
 gi|194413579|gb|EDX29860.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           B171]
 gi|218360246|emb|CAQ97796.1| recombination protein [Escherichia coli IAI1]
 gi|257758289|dbj|BAI29786.1| recombination protein [Escherichia coli O103:H2 str. 12009]
 gi|323159517|gb|EFZ45497.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli E128010]
 gi|323947319|gb|EGB43327.1| ATPase [Escherichia coli H120]
 gi|324116105|gb|EGC10029.1| ATPase [Escherichia coli E1167]
 gi|332088848|gb|EGI93960.1| ATPase family associated with various cellular activities family
           protein [Shigella boydii 5216-82]
          Length = 447

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|326501866|dbj|BAK06425.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 398

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 48/192 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+ LA   +    +     ++ ++ +  I     ++          
Sbjct: 171 PPKGVLLYGPPGTGKTLLARAVASNIDANFMKVVSSAVIAKFIGESARIIREMFAYARNH 230

Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 +++ID L                  L  ++N      +     ++ A   P   
Sbjct: 231 EPCIIFMDEIDALGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKIIMATNRPDVL 290

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L   R+     ++I LP++   ++++    A             + +  E    
Sbjct: 291 DPAL--LRPGRMD--RKIEIPLPNEQARQEILKIHAAA------------MAKHGEIDYE 334

Query: 211 FAEKLVDKMDNL 222
            A KL +  +  
Sbjct: 335 AAAKLAEGFNAA 346


>gi|322830115|gb|EFZ33254.1| ATP-dependent chaperone, putative [Trypanosoma cruzi]
          Length = 468

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 51/145 (35%), Gaps = 32/145 (22%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLED 115
           R  +L GP G GKS      + + R         S   S+ A          R  VLLED
Sbjct: 257 RGYLLHGPPGCGKSSFVMALAGELRLSICPLSLSSRGLSDEALVGLLNSAPLRSIVLLED 316

Query: 116 IDLLDFNDTQLFH-----IINS----IHQYDSSLLMT---------ARTFPVSWGVCLP- 156
           ID     D+   H     ++N+      Q    + MT         A   P    V L  
Sbjct: 317 IDRAFSADS---HITMSGLLNALDGVAAQEGRIVFMTTNHVERLDDALIRPGRCDVKLEI 373

Query: 157 DLCSRLKAATVVKISLPD-DDFLEK 180
            L SR +A  + +   PD DD L  
Sbjct: 374 GLLSRDQAQQLFRKFFPDADDKLRA 398


>gi|322701966|gb|EFY93714.1| vacuolar protein sorting-associated protein VPS4 [Metarhizium
           acridum CQMa 102]
 gi|322708445|gb|EFZ00023.1| vacuolar protein sorting-associated protein VPS4 [Metarhizium
           anisopliae ARSEF 23]
          Length = 430

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            +W  + ++L GP G+GKS LA   + ++ ST FS
Sbjct: 159 QAW--KGILLYGPPGTGKSYLAKAVATEANSTFFS 191


>gi|302813234|ref|XP_002988303.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii]
 gi|300144035|gb|EFJ10722.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii]
          Length = 829

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   + ++    FS        +        + +
Sbjct: 325 VLLHGPPGTGKTLLARAIAGEAGLPFFSVGGAEFVEMYAGVAAARVQD 372


>gi|302898773|ref|XP_003047913.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256728845|gb|EEU42200.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 430

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            +W  + ++L GP G+GKS LA   + ++ ST FS
Sbjct: 159 QAW--KGILLYGPPGTGKSYLAKAVATEANSTFFS 191


>gi|255644457|gb|ACU22732.1| unknown [Glycine max]
          Length = 303

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++
Sbjct: 171 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLI 220


>gi|227546758|ref|ZP_03976807.1| recombination ATPase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212720|gb|EEI80601.1| recombination ATPase [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 459

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 28/144 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           VIL GP G GK+ LA I + +S          ++  K +  +L    + ++         
Sbjct: 63  VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 116

Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169
            +T LF   +         +LL          + A T   S+ +  P L SR   + VVK
Sbjct: 117 RETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 172

Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192
           +   + D   E V   +  DR + 
Sbjct: 173 LESLEPDQLTELVQRALTDDRGLR 196


>gi|221130788|ref|XP_002166795.1| PREDICTED: similar to spermatogenesis associated 5 [Hydra
           magnipapillata]
          Length = 1973

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF 93
           +I  GPSG+GK+ LAN + ++      
Sbjct: 778 IIFYGPSGTGKTHLANAFVNELSGVSL 804


>gi|172036185|ref|YP_001802686.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171697639|gb|ACB50620.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 628

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 45/214 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 268

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 328

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       V +  PD     +++     ++++  D      I +R       A
Sbjct: 329 ------MRPGRFDRQVIVDAPDFKGRIEILEVHARNKKLAPDVS-IESIARRTP-GFSGA 380

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             L + ++  A+       R  A  +L+     D
Sbjct: 381 -DLANLLNEAAILTARR--RKEAITLLEIDDAVD 411


>gi|116584329|gb|ABK00519.1| ORF1 [Human parvovirus 5]
 gi|189017206|gb|ACD71470.1| ORF1 [Human parvovirus 4]
 gi|189017209|gb|ACD71472.1| ORF1 [Human parvovirus 4]
 gi|189017212|gb|ACD71474.1| ORF1 [Human parvovirus 4]
          Length = 663

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 58  SWPS--WPSRVVI-LVGPSGSGKSCLANIWSDKS 88
           +W    WP R  I L GP+ +GK+ LA   ++ S
Sbjct: 318 AWARGVWPKRRAIWLWGPASTGKTLLAAAIANLS 351


>gi|116584335|gb|ABK00521.1| ORF1 [Human parvovirus 5]
          Length = 663

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 58  SWPS--WPSRVVI-LVGPSGSGKSCLANIWSDKS 88
           +W    WP R  I L GP+ +GK+ LA   ++ S
Sbjct: 318 AWARGVWPKRRAIWLWGPASTGKTLLAAAIANLS 351


>gi|148269914|ref|YP_001244374.1| ATP-dependent protease ATP-binding subunit ClpX [Thermotoga
           petrophila RKU-1]
 gi|170288599|ref|YP_001738837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           sp. RQ2]
 gi|281412205|ref|YP_003346284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           naphthophila RKU-10]
 gi|147735458|gb|ABQ46798.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermotoga
           petrophila RKU-1]
 gi|170176102|gb|ACB09154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           sp. RQ2]
 gi|281373308|gb|ADA66870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga
           naphthophila RKU-10]
          Length = 406

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           V+L+GP+G+GK+ LA I +         N+  ++      T    + ED++ +
Sbjct: 106 VLLIGPTGTGKTYLARILAK------ILNVPFAIADATPLTEAGYVGEDVENV 152


>gi|32364696|gb|AAP80385.1| ABC transporter [Gossypium hirsutum]
          Length = 705

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 34  RCLGISRDDL--LVHSAIEQAVRLIDSWPSWPSR--VVILVGPSGSGKSCLANIWSDKSR 89
               ++ +DL  +V  +     ++++    +     +  L+GPSGSGKS L +  S +  
Sbjct: 48  VSARLTWEDLTVMVTLSNGATQKVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107

Query: 90  STRF 93
           +  F
Sbjct: 108 ANAF 111


>gi|81300123|ref|YP_400331.1| FtsH-2 peptidase [Synechococcus elongatus PCC 7942]
 gi|81169004|gb|ABB57344.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41
           [Synechococcus elongatus PCC 7942]
          Length = 623

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++R   FS        + +                     
Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEARVPFFSISGSEFVELFVGAGAARVRDLFEQAKQKAPCI 264

Query: 111 VLLEDIDLL----------DFNDT------QLFHIINSIHQYDSSL-LMTARTFPVSWGV 153
           V ++++D +            ND       QL   ++      +++ ++ A   P +   
Sbjct: 265 VFIDELDAIGKSRASGNFMGGNDEREQTLNQLLTEMDGFSADGATVIVLAATNRPETLDP 324

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209
            L      L+       V +  PD    + ++      R++ +D ++    I  R   S 
Sbjct: 325 AL------LRPGRFDRQVLVDRPDLAGRKAILD--IYGRKVKLDPEVDLQAIAVRT--SG 374

Query: 210 VFAEKLVDKMDNLALSRGM 228
                L + ++  AL    
Sbjct: 375 FAGADLANLINEAALLAAR 393


>gi|61657345|emb|CAI44263.1| ATP-dependent Clp protease, ATPase subunit [Thermotoga naphthophila
           RKU-10]
          Length = 413

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           V+L+GP+G+GK+ LA I +         N+  ++      T    + ED++ +
Sbjct: 113 VLLIGPTGTGKTYLARILAK------ILNVPFAIADATPLTEAGYVGEDVENV 159


>gi|37805760|emb|CAD56954.1| DNAA protein [Wolbachia endosymbiont of Drosophila recens]
          Length = 140

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
               V  I+    +    ++        +++ K +  ++ + ++ ++   E  ++K+ + 
Sbjct: 1   GWGLVADINETTFELRLGILQAKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHT 60

Query: 223 ALSRGMGITRSLAAEVL 239
           +L  G  +T   A+E L
Sbjct: 61  SLI-GRRMTVESASETL 76


>gi|15642920|ref|NP_227961.1| ATP-dependent protease ATP-binding subunit ClpX [Thermotoga
           maritima MSB8]
 gi|8134367|sp|Q9WXZ3|CLPX_THEMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|4980639|gb|AAD35239.1|AE001700_3 ATP-dependent Clp protease, ATPase subunit clpX [Thermotoga
           maritima MSB8]
          Length = 406

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           V+L+GP+G+GK+ LA I +         N+  ++      T    + ED++ +
Sbjct: 106 VLLIGPTGTGKTYLARILAK------ILNVPFAIADATPLTEAGYVGEDVENV 152


>gi|18424166|ref|NP_568892.1| ftsh9 (FtsH protease 9); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|75170859|sp|Q9FIM2|FTSH9_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 9,
           chloroplastic; Short=AtFTSH9; Flags: Precursor
 gi|9759220|dbj|BAB09632.1| cell division protein FtsH [Arabidopsis thaliana]
 gi|16648973|gb|AAL24338.1| cell division protein FtsH [Arabidopsis thaliana]
 gi|332009729|gb|AED97112.1| cell division protease ftsH-9 [Arabidopsis thaliana]
          Length = 806

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 30/196 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------D 106
           P R V+LVG  G+GK+ LA   + +S     S  A     + +                +
Sbjct: 361 PPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVRDLFARAKKE 420

Query: 107 TRKPVLLEDIDLLDFNDTQLFHII-NSIHQYDSSLLMT------ARTFPVSWG------V 153
               + +++ID +  +    F ++ N   +   + L+T      + +  +  G      V
Sbjct: 421 APSIIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADV 480

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
             P L    +   VV +  PD    E ++    + +++ +   +    +  M      A 
Sbjct: 481 LDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGFTGA- 539

Query: 214 KLVDKMDNLALSRGMG 229
            L + ++  AL  G  
Sbjct: 540 DLANLVNEAALLAGRK 555


>gi|66357178|ref|XP_625767.1| CDC48 like AAA ATpase [Cryptosporidium parvum Iowa II]
 gi|46226983|gb|EAK87949.1| CDC48 like AAA ATpase [Cryptosporidium parvum Iowa II]
          Length = 891

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 12/76 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           PS+ ++L GP G+GK+ +A   +++    +   + S++  S+D I+ID        +I  
Sbjct: 310 PSKGILLYGPPGTGKTLIARSIAEEIELITTFKQDSDLELSVDFIVIDGS------NISN 363

Query: 119 LDFNDTQLFHIINSIH 134
              ++    H  NSI 
Sbjct: 364 NTDDEDN--HFFNSIQ 377


>gi|46138899|ref|XP_391140.1| hypothetical protein FG10964.1 [Gibberella zeae PH-1]
          Length = 432

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            +W  + ++L GP G+GKS LA   + ++ ST FS
Sbjct: 161 QAW--KGILLYGPPGTGKSYLAKAVATEANSTFFS 193


>gi|67541767|ref|XP_664651.1| hypothetical protein AN7047.2 [Aspergillus nidulans FGSC A4]
 gi|40742503|gb|EAA61693.1| hypothetical protein AN7047.2 [Aspergillus nidulans FGSC A4]
 gi|259483637|tpe|CBF79190.1| TPA: membrane-spanning ATPase, putative (AFU_orthologue;
           AFUA_4G03990) [Aspergillus nidulans FGSC A4]
          Length = 410

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S ++  +
Sbjct: 140 PSGVL-LYGPPGCGKTMLAKALAHESGASFIN 170


>gi|15610746|ref|NP_218127.1| membrane-bound protease FTSH (cell division protein) [Mycobacterium
           tuberculosis H37Rv]
 gi|31794786|ref|NP_857279.1| membrane-bound protease FTSH (cell division protein) [Mycobacterium
           bovis AF2122/97]
 gi|121639529|ref|YP_979753.1| membrane-bound protease ftsH [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663474|ref|YP_001284997.1| cell division protein FtsH [Mycobacterium tuberculosis H37Ra]
 gi|148824816|ref|YP_001289569.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis F11]
 gi|215405659|ref|ZP_03417840.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis 02_1987]
 gi|215413533|ref|ZP_03422205.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215432584|ref|ZP_03430503.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis EAS054]
 gi|215447950|ref|ZP_03434702.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis T85]
 gi|218755392|ref|ZP_03534188.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis GM 1503]
 gi|219559685|ref|ZP_03538761.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis T17]
 gi|224992026|ref|YP_002646715.1| membrane-bound protease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800650|ref|YP_003033651.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233111|ref|ZP_04926437.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis C]
 gi|254366165|ref|ZP_04982209.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254552724|ref|ZP_05143171.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260184530|ref|ZP_05762004.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CPHL_A]
 gi|260198654|ref|ZP_05766145.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T46]
 gi|289441041|ref|ZP_06430785.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T46]
 gi|289445204|ref|ZP_06434948.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555872|ref|ZP_06445082.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 605]
 gi|289571849|ref|ZP_06452076.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T17]
 gi|289747446|ref|ZP_06506824.1| cell division protein ftsH [Mycobacterium tuberculosis 02_1987]
 gi|289748124|ref|ZP_06507502.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T92]
 gi|289755737|ref|ZP_06515115.1| membrane-bound protease ftsh [Mycobacterium tuberculosis EAS054]
 gi|289759770|ref|ZP_06519148.1| membrane-bound protease ftsh [Mycobacterium tuberculosis T85]
 gi|289763788|ref|ZP_06523166.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294993728|ref|ZP_06799419.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis 210]
 gi|297636285|ref|ZP_06954065.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 4207]
 gi|297733279|ref|ZP_06962397.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN R506]
 gi|298527088|ref|ZP_07014497.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306974083|ref|ZP_07486744.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu010]
 gi|307081791|ref|ZP_07490961.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu011]
 gi|307086407|ref|ZP_07495520.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu012]
 gi|313660609|ref|ZP_07817489.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN V2475]
 gi|61224305|sp|P0A4V9|FTSH_MYCBO RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|158513773|sp|A5U8T5|FTSH_MYCTA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|158517768|sp|P0C5C0|FTSH_MYCTU RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2113966|emb|CAB08956.1| MEMBRANE-BOUND PROTEASE FTSH (CELL DIVISION PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|31620383|emb|CAD95826.1| MEMBRANE-BOUND PROTEASE FTSH (CELL DIVISION PROTEIN) [Mycobacterium
           bovis AF2122/97]
 gi|121495177|emb|CAL73663.1| Membrane-bound protease ftsH [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124602904|gb|EAY61179.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis C]
 gi|134151677|gb|EBA43722.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148507626|gb|ABQ75435.1| cell division protein FtsH [Mycobacterium tuberculosis H37Ra]
 gi|148723343|gb|ABR07968.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis F11]
 gi|224775141|dbj|BAH27947.1| membrane-bound protease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253322153|gb|ACT26756.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 1435]
 gi|289413960|gb|EFD11200.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T46]
 gi|289418162|gb|EFD15363.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CPHL_A]
 gi|289440504|gb|EFD22997.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 605]
 gi|289545603|gb|EFD49251.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T17]
 gi|289687974|gb|EFD55462.1| cell division protein ftsH [Mycobacterium tuberculosis 02_1987]
 gi|289688711|gb|EFD56140.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis T92]
 gi|289696324|gb|EFD63753.1| membrane-bound protease ftsh [Mycobacterium tuberculosis EAS054]
 gi|289711294|gb|EFD75310.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289715334|gb|EFD79346.1| membrane-bound protease ftsh [Mycobacterium tuberculosis T85]
 gi|298496882|gb|EFI32176.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308356600|gb|EFP45451.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu010]
 gi|308360557|gb|EFP49408.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu011]
 gi|308364173|gb|EFP53024.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu012]
 gi|326905448|gb|EGE52381.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis W-148]
 gi|328460381|gb|AEB05804.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis KZN 4207]
          Length = 760

 Score = 38.6 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 82/268 (30%), Gaps = 62/268 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K++ +QL    P+         D          D L + +  QA+         P  V+ 
Sbjct: 147 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 200

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112
           L GP G+GK+ LA   + ++    F+        + +                     + 
Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIF 260

Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +++ID +               +  L  +   ++        +L+ A   P      L  
Sbjct: 261 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPAL-- 318

Query: 158 LCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
               L+       + +S PD      V+      + +  D  L   + +R    +  A  
Sbjct: 319 ----LRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADL-DGLAKRTV-GMTGA-D 371

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
           L + ++  AL         +    L+E 
Sbjct: 372 LANVINEAALLTARENGTVITGPALEEA 399


>gi|328767128|gb|EGF77179.1| 26S protease subunit [Batrachochytrium dendrobatidis JAM81]
          Length = 400

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 175 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 222


>gi|326494092|dbj|BAJ85508.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 418

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 197 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 244


>gi|324507045|gb|ADY42995.1| 26S protease regulatory subunit 6A [Ascaris suum]
          Length = 431

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 38/183 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V++ GP G+GK+ +A   + +++ST        L  + I     ++          
Sbjct: 211 PPKGVLMYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 270

Query: 113 ------LEDIDLL---------DFN---DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151
                 ++++D +           +      +  ++N        D   ++ A       
Sbjct: 271 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDIKVIAATNRVDVL 330

Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
              L  L S RL     +++  P++D   +++      R++ +DK +    + R      
Sbjct: 331 DPAL--LRSGRLD--RKIELPTPNEDARARIMQ--IHSRKMNVDKDVNYEELARCTDDFN 384

Query: 211 FAE 213
            A+
Sbjct: 385 GAQ 387


>gi|319941759|ref|ZP_08016081.1| Holliday junction ATP-dependent DNA helicase ruvB [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804692|gb|EFW01559.1| Holliday junction ATP-dependent DNA helicase ruvB [Sutterella
           wadsworthensis 3_1_45B]
          Length = 350

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 25/200 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   ++L GP G GK+ LA+I +++            L+           LE  D+L  +
Sbjct: 57  PLDHLLLFGPPGLGKTTLAHIVAEEMGVNLRQTSGPVLERPGDLAAILTNLEKNDVLFID 116

Query: 123 DTQLFH------IINSIHQYDSSLLMTARTFPVSWGVCLP----------------DLCS 160
           +           +  ++  Y   +++       S  + LP                 L +
Sbjct: 117 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSIKLDLPPFTLIGATTRAGSLTNPLRA 176

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM- 219
           R     V ++     + L  ++ +      + ID + AA I  R   +   A +L+ ++ 
Sbjct: 177 RF--GIVNQLQFYTTEELITIVRRSARLLGVSIDPEGAAEIASRSRGTPRVANRLLRRVR 234

Query: 220 DNLALSRGMGITRSLAAEVL 239
           D   +     ITR +A+  L
Sbjct: 235 DYAEVRHDGTITREVASAAL 254


>gi|321258374|ref|XP_003193908.1| 26S protease regulatory subunit 6B [Cryptococcus gattii WM276]
 gi|317460378|gb|ADV22121.1| 26S protease regulatory subunit 6B, putative [Cryptococcus gattii
           WM276]
          Length = 407

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 233


>gi|312880161|ref|ZP_07739961.1| Holliday junction DNA helicase subunit RuvB [Aminomonas paucivorans
           DSM 12260]
 gi|310783452|gb|EFQ23850.1| Holliday junction DNA helicase subunit RuvB [Aminomonas paucivorans
           DSM 12260]
          Length = 353

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 25/201 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------LIDTRKPVLLE 114
           P    +  GP G GK+ LA+I + +           +L+           +     + ++
Sbjct: 60  PLDHTLFYGPPGLGKTTLASIIAREMGGQLRITTGPALERAGDLAAILSNLQPHDVLFID 119

Query: 115 DIDLLDFNDTQLFHI----INSIHQYDSSLL----------MTARTFPVSWGVCLPDLCS 160
           +I  L     ++ +      N         L           T        G+    L +
Sbjct: 120 EIHRLPVTVEEILYPAMEDYNLCIVVGKGPLARSVRLQLPRFTLVGATTRLGLMTSPLRA 179

Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM- 219
           R     V ++ L D   L K++ +      + I++  +  I +R   +   A +L+ ++ 
Sbjct: 180 RF--GIVEQLDLYDPRDLTKIVTRGAEVLGVQIEEDASLEIGRRSRGTPRVALRLLRRVR 237

Query: 220 DNLALSRGMGITRSLAAEVLK 240
           D  A+S   GI R++A   L 
Sbjct: 238 DVAAVSGEAGIRRTVACSALD 258


>gi|282866362|ref|ZP_06275407.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE]
 gi|282558758|gb|EFB64315.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE]
          Length = 685

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    +S        + +      + +  +    N   +
Sbjct: 209 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 268


>gi|289432284|ref|YP_003462157.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT]
 gi|288946004|gb|ADC73701.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT]
          Length = 604

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 191 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKN 246


>gi|189017222|gb|ACD71480.1| ORF1 [Human parvovirus 4]
          Length = 663

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 58  SWPS--WPSRVVI-LVGPSGSGKSCLANIWSDKS 88
           +W    WP R  I L GP+ +GK+ LA   ++ S
Sbjct: 318 AWARGVWPKRRAIWLWGPASTGKTLLAAAIANLS 351


>gi|226467155|emb|CAX76058.1| Tat-binding protein 10 [Schistosoma japonicum]
          Length = 398

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 225


>gi|284990115|ref|YP_003408669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Geodermatophilus obscurus DSM 43160]
 gi|284063360|gb|ADB74298.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Geodermatophilus obscurus DSM 43160]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+G GK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 115 ILLMGPTGCGKTHLAQTLA------RMLNVPFAIADATALTEAGYVGEDVENI 161


>gi|229815611|ref|ZP_04445938.1| hypothetical protein COLINT_02662 [Collinsella intestinalis DSM
           13280]
 gi|229808841|gb|EEP44616.1| hypothetical protein COLINT_02662 [Collinsella intestinalis DSM
           13280]
          Length = 586

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 17/113 (15%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------VLLEDIDL 118
           L+GPSG+GKS LA+  +          +  S     +DT +            +L+DID 
Sbjct: 39  LIGPSGAGKSTLASAITGAIPHHYRGRLFGSTLVAGLDTCEASLTDIAKVAGSVLQDIDA 98

Query: 119 LD----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
                   D  LF + N    +     +  R       V + DL  R  A   
Sbjct: 99  QMVASVVEDELLFGLENFGIDHRE---IEGRIASALDAVGIADLRHREIATLS 148


>gi|195025715|ref|XP_001986111.1| GH21180 [Drosophila grimshawi]
 gi|193902111|gb|EDW00978.1| GH21180 [Drosophila grimshawi]
          Length = 910

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 12/128 (9%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
            V +L G  G+GK+ L +  + +     +      + S +    +  L         ++ 
Sbjct: 374 PVFLLQGERGAGKTKLISAMAQELGMHIYGADCAEIVSQVPSHTEMKLKAVFAKSQISEP 433

Query: 125 QL--FH---IINSIHQYDSSL-LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
            L  FH   I    ++ +  L L++A      + V + DL +R +   VV ++L  D  L
Sbjct: 434 LLICFHNFEIFGIDNEGNEDLRLLSA------FHVQIQDLFTRDRKFPVVVVALTSDKHL 487

Query: 179 EKVIVKMF 186
           + +I  +F
Sbjct: 488 KPMIQSLF 495


>gi|163855452|ref|YP_001629750.1| insertion sequence IS5376 putative ATP-binding protein [Bordetella
           petrii DSM 12804]
 gi|163259180|emb|CAP41480.1| Insertion sequence IS5376 putative ATP-binding protein [Bordetella
           petrii]
          Length = 283

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 33/146 (22%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQA-VRLIDSWPSWPSRVVILVGPSGSGKSCLA-----N 82
            F F     I R  +        A    I+        V++L GP G GK+ LA      
Sbjct: 95  SFDFGYQPSIDRKQV-----NTLASCHFIEH----GDNVIVL-GPPGVGKTHLAVSLGLK 144

Query: 83  IWSDKSR------STRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQL 126
                 R      +   + + ++     +D       T + +++++I  L  +       
Sbjct: 145 AIESGYRVLFTSAANLIATLTRAHAEGRLDEKLKVYTTPRLLIIDEIGYLPIDRLGANLF 204

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWG 152
           F +I+  ++    +++T+     +WG
Sbjct: 205 FQLISRRYERG-PMILTSNQSFSAWG 229


>gi|168039463|ref|XP_001772217.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676548|gb|EDQ63030.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 412

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GP G+GK+ LA   +  + +     +        +     ++ +   L   N
Sbjct: 192 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFQLAKEN 251

Query: 123 DTQL 126
              +
Sbjct: 252 APAI 255


>gi|164663343|ref|XP_001732793.1| hypothetical protein MGL_0568 [Malassezia globosa CBS 7966]
 gi|159106696|gb|EDP45579.1| hypothetical protein MGL_0568 [Malassezia globosa CBS 7966]
          Length = 490

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 38/175 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +T    I   L    +     ++          
Sbjct: 265 PPKGVLLFGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFELARTK 324

Query: 113 ---------LEDIDLLDFNDTQ---------LFHIINS---IHQYDSSLLMTARTFPVSW 151
                    ++ I  + F+D           +  +IN         +  ++ A   P + 
Sbjct: 325 KACIIFFDEVDAIGGVRFDDGAGGDNEVQRTMLELINQLDGFDSRGNIKVLMATNRPDTL 384

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
              L  L   RL     V+  LPD+D    ++      R + +++ +   ++ R+
Sbjct: 385 DPAL--LRPGRLD--RRVEFGLPDNDGRAHILRIHA--RSMSVERNIRYDLIARL 433


>gi|156063050|ref|XP_001597447.1| hypothetical protein SS1G_01641 [Sclerotinia sclerotiorum 1980]
 gi|154696977|gb|EDN96715.1| hypothetical protein SS1G_01641 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 391

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 171 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 218


>gi|154292987|ref|XP_001547053.1| 26S protease regulatory subunit 8 [Botryotinia fuckeliana B05.10]
 gi|150845667|gb|EDN20860.1| 26S protease regulatory subunit 8 [Botryotinia fuckeliana B05.10]
          Length = 389

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 169 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 216


>gi|134103754|ref|YP_001109415.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291007720|ref|ZP_06565693.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916377|emb|CAM06490.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 432

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+G GK+ LA   +      R  ++  ++      T    + ED++ +
Sbjct: 122 ILLIGPTGCGKTHLAQTLA------RMLDVPFAIADATALTEAGYVGEDVENI 168


>gi|159040888|ref|YP_001540140.1| ABC transporter related [Caldivirga maquilingensis IC-167]
 gi|157919723|gb|ABW01150.1| ABC transporter related [Caldivirga maquilingensis IC-167]
          Length = 289

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 27/81 (33%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           VVI++GPSGSGKS L NI                +  +   T   V L+D+D+ D ++ +
Sbjct: 40  VVIIMGPSGSGKSTLLNI----------------MGMLDKPTSGRVYLDDVDVTDMSENE 83

Query: 126 -----------LFHIINSIHQ 135
                      LF   N I  
Sbjct: 84  LAKLRLLKVGFLFQQYNLIQN 104


>gi|57234811|ref|YP_181136.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes
           195]
 gi|57225259|gb|AAW40316.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes
           195]
          Length = 608

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 195 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKN 250


>gi|73748233|ref|YP_307472.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1]
 gi|73659949|emb|CAI82556.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1]
          Length = 608

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 195 ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKN 250


>gi|51595310|ref|YP_069501.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis IP 32953]
 gi|61211451|sp|Q66DT3|CLPX_YERPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|51588592|emb|CAH20200.1| specificity component of clpA-clpP ATP-dependent serine protease,
           chaperone [Yersinia pseudotuberculosis IP 32953]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 23/118 (19%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RLIDSWPSWPSRV--- 66
           ++    +++        P  +    DD ++    A   +  AV        +  +     
Sbjct: 53  KEVSPHRDRS---SLPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIE 109

Query: 67  -----VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
                ++L+GP+GSGK+ LA   +      R  ++  ++      T    + ED++ +
Sbjct: 110 LGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLTEAGYVGEDVENI 161


>gi|115444937|ref|NP_001046248.1| Os02g0205300 [Oryza sativa Japonica Group]
 gi|11094194|dbj|BAB17626.1| 26S proteasome regulatory particle triple-A ATPase subunit6 [Oryza
           sativa Japonica Group]
 gi|11991116|dbj|BAB19880.1| 26S proteasome ATPase subunit Rpt6 [Oryza sativa]
 gi|46390529|dbj|BAD16017.1| 26S proteasome regulatory particle triple-A ATPase subunit6 [Oryza
           sativa Japonica Group]
 gi|51536269|dbj|BAD38437.1| 26S proteasome regulatory particle triple-A ATPase subunit6 [Oryza
           sativa Japonica Group]
 gi|113535779|dbj|BAF08162.1| Os02g0205300 [Oryza sativa Japonica Group]
 gi|125538544|gb|EAY84939.1| hypothetical protein OsI_06305 [Oryza sativa Indica Group]
 gi|125581230|gb|EAZ22161.1| hypothetical protein OsJ_05824 [Oryza sativa Japonica Group]
 gi|215692677|dbj|BAG88097.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215717117|dbj|BAG95480.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741151|dbj|BAG97646.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 424

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 203 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 250


>gi|162606568|ref|XP_001713314.1| 26S protease regulatory SU 7 [Guillardia theta]
 gi|12580780|emb|CAC27098.1| 26S protease regulatory SU 7 [Guillardia theta]
          Length = 394

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P +  +L GP G+GK+ +A   ++K+ ++        L    I     ++          
Sbjct: 169 PPKGALLYGPPGTGKTLVARAVANKTNASFVKINCSELVQKYIGEGARLVRELFNLSKTK 228

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSI----HQYDSSLLMTARTF--- 147
                  +++D +                  +  I+N +     + ++ +LM        
Sbjct: 229 FACIMFFDELDAIGGTRFSGASGGENEVQRTMLEIVNQLDGFEKRGNTKVLMATNRPDTI 288

Query: 148 -PVSW---------GVCLPDLCSR 161
            P               LPDL  R
Sbjct: 289 DPALLRPGRLDRKIEFSLPDLSGR 312


>gi|67603252|ref|XP_666536.1| 26S proteasome regulatory subunit [Cryptosporidium hominis TU502]
 gi|54657551|gb|EAL36305.1| 26S proteasome regulatory subunit [Cryptosporidium hominis]
          Length = 391

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +          +A ++    I     V+ E
Sbjct: 172 VLLYGPPGTGKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIRE 219


>gi|58260138|ref|XP_567479.1| endopeptidase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134116600|ref|XP_772972.1| hypothetical protein CNBJ2480 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255592|gb|EAL18325.1| hypothetical protein CNBJ2480 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229529|gb|AAW45962.1| endopeptidase, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 407

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 233


>gi|66359630|ref|XP_626993.1| 26S proteasome regulatory subunit S10b like AAA+ ATpase
           [Cryptosporidium parvum Iowa II]
 gi|46228795|gb|EAK89665.1| 26S proteasome regulatory subunit S10b like AAA+ ATpase
           [Cryptosporidium parvum Iowa II]
          Length = 406

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +          +A ++    I     V+ E
Sbjct: 187 VLLYGPPGTGKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIRE 234


>gi|22124935|ref|NP_668358.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           KIM 10]
 gi|45440624|ref|NP_992163.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108808642|ref|YP_652558.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Antiqua]
 gi|108811099|ref|YP_646866.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Nepal516]
 gi|145600051|ref|YP_001164127.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Pestoides F]
 gi|149364998|ref|ZP_01887033.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis CA88-4125]
 gi|153950055|ref|YP_001402051.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419302|ref|YP_001607419.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           Angola]
 gi|165926541|ref|ZP_02222373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165936053|ref|ZP_02224623.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166011049|ref|ZP_02231947.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212940|ref|ZP_02238975.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167398781|ref|ZP_02304305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421680|ref|ZP_02313433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423157|ref|ZP_02314910.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025450|ref|YP_001721955.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis YPIII]
 gi|186894327|ref|YP_001871439.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930186|ref|YP_002348061.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis
           CO92]
 gi|229838760|ref|ZP_04458919.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896086|ref|ZP_04511256.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Pestoides A]
 gi|229899328|ref|ZP_04514471.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901328|ref|ZP_04516450.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Nepal516]
 gi|270489514|ref|ZP_06206588.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis KIM D27]
 gi|294504887|ref|YP_003568949.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           Z176003]
 gi|21263471|sp|Q8ZC66|CLPX_YERPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122979462|sp|Q1C4K9|CLPX_YERPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123246670|sp|Q1CL64|CLPX_YERPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166215220|sp|A4TPE2|CLPX_YERPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167009021|sp|A7FLC3|CLPX_YERP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238687254|sp|A9QZQ2|CLPX_YERPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238688402|sp|B1JHS0|CLPX_YERPY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238691418|sp|B2K6V8|CLPX_YERPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|21957774|gb|AAM84609.1|AE013706_4 ATP-dependent specificity component of clpP serine protease,
           chaperone [Yersinia pestis KIM 10]
 gi|45435481|gb|AAS61040.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108774747|gb|ABG17266.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis Nepal516]
 gi|108780555|gb|ABG14613.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis Antiqua]
 gi|115348797|emb|CAL21751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis CO92]
 gi|145211747|gb|ABP41154.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis Pestoides F]
 gi|149291411|gb|EDM41485.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia
           pestis CA88-4125]
 gi|152961550|gb|ABS49011.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352117|gb|ABX86065.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis Angola]
 gi|165916198|gb|EDR34805.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165921469|gb|EDR38666.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990049|gb|EDR42350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166205727|gb|EDR50207.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960599|gb|EDR56620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051285|gb|EDR62693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057327|gb|EDR67073.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751984|gb|ACA69502.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis YPIII]
 gi|186697353|gb|ACC87982.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681257|gb|EEO77351.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Nepal516]
 gi|229687730|gb|EEO79803.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695126|gb|EEO85173.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701009|gb|EEO89038.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis Pestoides A]
 gi|262362953|gb|ACY59674.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           D106004]
 gi|262366872|gb|ACY63429.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           D182038]
 gi|270338018|gb|EFA48795.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia
           pestis KIM D27]
 gi|294355346|gb|ADE65687.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis
           Z176003]
 gi|320016342|gb|ADV99913.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 23/118 (19%)

Query: 16  QKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RLIDSWPSWPSRV--- 66
           ++    +++        P  +    DD ++    A   +  AV        +  +     
Sbjct: 53  KEVSPHRDRS---SLPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIE 109

Query: 67  -----VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
                ++L+GP+GSGK+ LA   +      R  ++  ++      T    + ED++ +
Sbjct: 110 LGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLTEAGYVGEDVENI 161


>gi|311112388|ref|YP_003983610.1| cell division protein FtsH [Rothia dentocariosa ATCC 17931]
 gi|310943882|gb|ADP40176.1| cell division protein FtsH [Rothia dentocariosa ATCC 17931]
          Length = 765

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   + ++ +  +S        + +      + +
Sbjct: 216 VLLYGPPGTGKTLLAKAVAGEAGAPFYSISGSDFVEMFVGVGASRVRD 263


>gi|293392025|ref|ZP_06636359.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952559|gb|EFE02678.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 446

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 78/202 (38%), Gaps = 33/202 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113
           +I  GP G+GK+ LA I S +  +   R S +   +  I           L   R  + +
Sbjct: 53  MIFWGPPGTGKTTLAEIISHRINAEVERISAVTSGIKEIREAIDKAKQNKLAGLRTILFV 112

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  + + + A T   S+ +    L SR   A V  + 
Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSR---ARVYILK 163

Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223
                 +E+V+ +   D        ++ + + L + + + +      A   ++ M D   
Sbjct: 164 PLSAQEIERVLQQAIDDPENGLGKVRLNLQENLLSLLAEYVNGDARLALNCLEMMVDMAG 223

Query: 224 LSRGMGI-TRSLAAEVLKETQQ 244
            S    I  R+L  EVL E Q 
Sbjct: 224 ESENGKILDRTLLTEVLGERQA 245


>gi|261328142|emb|CBH11119.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 887

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 56/200 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------------LDSILID 106
           P R ++L GP G+GK+ +A   +++++ T F+  A S                    ++ 
Sbjct: 600 PPRGLLLFGPPGTGKTMIARAIANRAQCTFFNISASSVMSKWMGDGEKLVRCLFAVAVVK 659

Query: 107 TRKPVLLEDID---------------------LLDFNDTQLFHIINSIHQYDSSLLMTAR 145
               + +++ID                     L+  +           +Q D  LL+ A 
Sbjct: 660 QPSVIFIDEIDSLLSMRSEGEMDAVRRVKTEFLVQLDGVA-------TNQGDRVLLIGAT 712

Query: 146 TFPVSW-GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
             P          L  RL       I LPD +   ++I  +         + +       
Sbjct: 713 NRPDELDEAARRRLEKRL------YIPLPDINARAQLIKMLLEQTGTNCGQAVGQ----- 761

Query: 205 MERSLVFAEKLVDKMDNLAL 224
              S   A   V  MD  ++
Sbjct: 762 SAESAGKAASSVSDMDEKSI 781


>gi|259481767|tpe|CBF75598.1| TPA: AAA family ATPase, putative (AFU_orthologue; AFUA_6G12560)
           [Aspergillus nidulans FGSC A4]
          Length = 803

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 550 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 589


>gi|226329067|ref|ZP_03804585.1| hypothetical protein PROPEN_02970 [Proteus penneri ATCC 35198]
 gi|225202253|gb|EEG84607.1| hypothetical protein PROPEN_02970 [Proteus penneri ATCC 35198]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 20/104 (19%)

Query: 30  FSFPRCLGISRDDLLVHSAIE------QAVRLIDSWPSWPS--------RVVILVGPSGS 75
              P  +    DD ++   +                 +             ++L+GP+GS
Sbjct: 64  LPTPHEIRKHLDDYVIGQELAKKVLAVAVYNHYKRLRNGDKANGVELGKSNILLIGPTGS 123

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           GK+ LA   +      R+ ++  ++      T    + ED++ +
Sbjct: 124 GKTLLAETLA------RYLDVPFTMADATTLTEAGYVGEDVENI 161


>gi|254485736|ref|ZP_05098941.1| transposase IstB protein [Roseobacter sp. GAI101]
 gi|214042605|gb|EEB83243.1| transposase IstB protein [Roseobacter sp. GAI101]
          Length = 263

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 34/148 (22%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVR------LIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           FP    ++  D       E  VR       I++  +     V+L+G  G+GKS +A    
Sbjct: 69  FPSYKDLAGFDFASSDINEATVRQLHRGEFIENAEN-----VVLIGGPGTGKSHVATAIG 123

Query: 86  DKS-----------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND----------- 123
            ++            +    N  +   ++    +   +L  IDL+  ++           
Sbjct: 124 VQAIEHHRRKVRFYSTVELVNALEQEKALGKAGKMAEMLTKIDLVILDELGYLPFSPSGG 183

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSW 151
             LFH+++ +++  +S+++T       W
Sbjct: 184 ALLFHLLSKLYER-TSVVITTNLSFSEW 210


>gi|254479639|ref|ZP_05092942.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034424|gb|EEB75195.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 608

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 68/203 (33%), Gaps = 43/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFEQAKKNAPCI 253

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 254 VFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSVNEGIIVIAATNRPDILDPAL 313

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L   R     VV I  PD    E+++     ++ +  D  L   I +R       A  
Sbjct: 314 --LRPGRFDRHIVVNI--PDIKGREEILKVHARNKPLAPDVSL-QVIARRTP-GFTGA-D 366

Query: 215 LVDKMDNLALSRGMG----ITRS 233
           L + M+  AL         IT +
Sbjct: 367 LENVMNEAALLAARKGLKQITMA 389


>gi|197284028|ref|YP_002149900.1| ATP-dependent protease ATP-binding subunit ClpX [Proteus mirabilis
           HI4320]
 gi|227358101|ref|ZP_03842443.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
 gi|238693153|sp|B4EU54|CLPX_PROMH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|194681515|emb|CAR40395.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           HI4320]
 gi|227161836|gb|EEI46868.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis
           ATCC 29906]
          Length = 423

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 20/104 (19%)

Query: 30  FSFPRCLGISRDDLLVHSAIE------QAVRLIDSWPSWPS--------RVVILVGPSGS 75
              P  +    DD ++   +                 +             ++L+GP+GS
Sbjct: 64  LPTPHEIRKHLDDYVIGQELAKKVLAVAVYNHYKRLRNGDKADGVELGKSNILLIGPTGS 123

Query: 76  GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           GK+ LA   +      R+ ++  ++      T    + ED++ +
Sbjct: 124 GKTLLAETLA------RYLDVPFTMADATTLTEAGYVGEDVENI 161


>gi|156368649|ref|XP_001627805.1| predicted protein [Nematostella vectensis]
 gi|156214725|gb|EDO35705.1| predicted protein [Nematostella vectensis]
          Length = 613

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 41/167 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVL-- 112
           P+   +L GP G GK+ LA+  + +        + +   S ++   +  + +     +  
Sbjct: 14  PTTGFLLHGPPGCGKTLLAHAIAGELEMPFLKLAATEIVSGVSGESEEKVRELFTSAVAQ 73

Query: 113 ------LEDIDLLDFNDT------------QLFHIINSIHQY--DSSLLMTARTFPVSWG 152
                 L++ID +                 QL   ++ ++       L++ A   P S  
Sbjct: 74  APCILFLDEIDAITPKRENASKDMERRIVSQLLSCMDDLNNNPDAHVLVIGATNRPDSLD 133

Query: 153 VCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196
             L       +A      + + +PD+     ++  M   +Q+ +   
Sbjct: 134 PALR------RAGRFDREISMGIPDESARASILRVMC--KQLKLSAD 172



 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
             ++L GP G GK+ LA   +++S     S     L ++ +   +  +
Sbjct: 325 PGILLAGPPGCGKTLLAKAIANESGINFISVKGPELLNMYVGESERAV 372


>gi|116584317|gb|ABK00511.1| ORF1 [Human parvovirus 4]
 gi|116584320|gb|ABK00513.1| ORF1 [Human parvovirus 4]
 gi|157780273|gb|ABV71692.1| ORF1 [Human parvovirus 4]
 gi|189017203|gb|ACD71468.1| ORF1 [Human parvovirus 4]
 gi|189017219|gb|ACD71478.1| ORF1 [Human parvovirus 4]
          Length = 663

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 58  SWPS--WPSRVVI-LVGPSGSGKSCLANIWSDKS 88
           +W    WP R  I L GP+ +GK+ LA   ++ S
Sbjct: 318 AWARGVWPKRRAIWLWGPASTGKTLLAAAIANLS 351


>gi|153011781|ref|YP_001372994.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
 gi|151563669|gb|ABS17165.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC
           49188]
          Length = 610

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   + ++  T FS        + +      + +
Sbjct: 192 ILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMFVGVGAARVRD 239


>gi|126453412|ref|YP_001065707.1| DNA replication protein DnaC, putative [Burkholderia pseudomallei
           1106a]
 gi|167846855|ref|ZP_02472363.1| DNA replication protein DnaC, putative [Burkholderia pseudomallei
           B7210]
 gi|242316259|ref|ZP_04815275.1| putative DNA replication protein DnaC [Burkholderia pseudomallei
           1106b]
 gi|126227054|gb|ABN90594.1| DNA replication protein DnaC, putative [Burkholderia pseudomallei
           1106a]
 gi|242139498|gb|EES25900.1| putative DNA replication protein DnaC [Burkholderia pseudomallei
           1106b]
          Length = 259

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 24/102 (23%)

Query: 66  VVILVGPSGSGKSCLANIWS---DKSRSTRFSNIAKSLDSILI------DTRKPVLLED- 115
            V+  GP G+GK+ LA   +    +S +  ++N    +  I        +  +  +L+D 
Sbjct: 119 TVVFSGPPGTGKTHLAIAAAMVVMQSGTALYTNALDLVRMIRDTWRRDSEATESAVLQDL 178

Query: 116 --IDLLDFNDTQ-----------LFHIIN-SIHQYDSSLLMT 143
             +DLL  ++             LF I+N        ++L+T
Sbjct: 179 SSVDLLVIDEIGVQYGTEGEQVILFDILNRRYRDLMPTILLT 220


>gi|17862380|gb|AAL39667.1| LD23843p [Drosophila melanogaster]
          Length = 551

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 34/186 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++          
Sbjct: 308 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 367

Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAA 165
                 ++++D L    +   H   +  +  +  L+     P +     PD   R+   A
Sbjct: 368 QPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGN-----PD-GDRIVVLA 419

Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
              +    D+  L +   +++       D++    ++ R+       +K    +D  AL 
Sbjct: 420 ATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDTEALR 470

Query: 226 RGMGIT 231
           R   IT
Sbjct: 471 RLAKIT 476


>gi|50954734|ref|YP_062022.1| ATP/GTP-binding integral membrane protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951216|gb|AAT88917.1| ATP/GTP-binding integral membrane protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 350

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 64  SRVVILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVL 112
              V L G  G GK+  LA IW +             +     +  +    L+     + 
Sbjct: 85  EPGVYLDGGFGVGKTHLLAAIWHEAPGPKYFGTFIEYTALVGALGYAGAVQLLRGSDLLC 144

Query: 113 LEDIDLLDFNDTQLFHII-NSIHQYDSSLLMTARTFPVSWG 152
           +++ +L D  DT +   +   +    + +  T+ T P + G
Sbjct: 145 IDEFELDDPGDTMMMTRMLGELVASGTRIAATSNTPPNALG 185


>gi|20808757|ref|NP_623928.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4]
 gi|20517401|gb|AAM25532.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4]
          Length = 611

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 68/203 (33%), Gaps = 43/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 197 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFEQAKKNAPCI 256

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 257 VFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSVNEGIIVIAATNRPDILDPAL 316

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L   R     VV I  PD    E+++     ++ +  D  L   I +R       A  
Sbjct: 317 --LRPGRFDRHIVVNI--PDIKGREEILKVHARNKPLAPDVSL-QVIARRTP-GFTGA-D 369

Query: 215 LVDKMDNLALSRGMG----ITRS 233
           L + M+  AL         IT +
Sbjct: 370 LENVMNEAALLAARKGLKQITMA 392


>gi|15643514|ref|NP_228560.1| uridine kinase-related protein [Thermotoga maritima MSB8]
 gi|148269323|ref|YP_001243783.1| phosphoribulokinase/uridine kinase [Thermotoga petrophila RKU-1]
 gi|4981276|gb|AAD35832.1|AE001744_22 uridine kinase-related protein [Thermotoga maritima MSB8]
 gi|147734867|gb|ABQ46207.1| phosphoribulokinase/uridine kinase [Thermotoga petrophila RKU-1]
          Length = 555

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 10/85 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----DIDLLD 120
           R++++ GPS SGK+  A   S + R      +A SLD   +D  K    E    D D ++
Sbjct: 291 RLILIAGPSSSGKTTFAKRLSLQLRVNGLKPVAISLDDYFVDREKTPRDENGNYDFDSIE 350

Query: 121 FNDTQLFHIINSIHQ---YDSSLLM 142
             D +LF   N   Q       +++
Sbjct: 351 ALDIELF---NRNLQDLLAGKEVVL 372


>gi|15790615|ref|NP_280439.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|169236353|ref|YP_001689553.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
 gi|12229754|sp|Q9HPF0|CDCH_HALSA RecName: Full=Protein CdcH
 gi|10581137|gb|AAG19919.1| cell division cycle protein [Halobacterium sp. NRC-1]
 gi|167727419|emb|CAP14207.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
           salinarum R1]
          Length = 742

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 63/165 (38%), Gaps = 37/165 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    D
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDD 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTA--RTFPVSWG 152
           +   + ++++D +                 QL  +++ +      +++ A  R   V   
Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPA 341

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           +  P    R      ++I +PD+   E+++      R + +   +
Sbjct: 342 LRRP---GRFD--REIEIGVPDEIGREEIL--KIHTRGMPLSDDV 379



 Score = 36.7 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   V+L GP G+GK+ +A   ++++ +   S
Sbjct: 495 PPAGVLLYGPPGTGKTLMAKAVANETNANFIS 526


>gi|85706692|ref|ZP_01037784.1| ATPase, AAA family protein [Roseovarius sp. 217]
 gi|85668750|gb|EAQ23619.1| ATPase, AAA family protein [Roseovarius sp. 217]
          Length = 435

 Score = 38.6 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID-- 117
            S     ++  GP G GK+ +A + +D++        A       +      + E+    
Sbjct: 50  ASGSLSSLVFWGPPGVGKTTIARLLADETDLHFIQISAIFTGVPELRK----VFEEAKHR 105

Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163
                 T LF    H  N   Q          ++L+   T              L SR +
Sbjct: 106 RTQGRGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LLSRAQ 162

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD------ 217
              + ++ L D + L +   +  + R + +D      +++  +        L++      
Sbjct: 163 VLVLTRLVLADLERLAQRAEQELS-RALPLDGPAREALLEMADGDGRALLNLIEQVAAWK 221

Query: 218 ---KMDNLALSRG 227
              K+D+ AL+  
Sbjct: 222 VEGKLDSSALATR 234


>gi|332759806|gb|EGJ90109.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri 4343-70]
 gi|333006990|gb|EGK26485.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-218]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|332194878|gb|AEE32999.1| 26S proteasome regulatory subunit T1 [Arabidopsis thaliana]
          Length = 620

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V+   GP GSGK+ +A   ++++ +     +   L    I     ++ E
Sbjct: 395 PKGVLC-YGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRE 445


>gi|332194877|gb|AEE32998.1| 26S proteasome regulatory subunit T1 [Arabidopsis thaliana]
          Length = 599

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V+   GP GSGK+ +A   ++++ +     +   L    I     ++ E
Sbjct: 374 PKGVLC-YGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRE 424


>gi|322488532|emb|CBZ23778.1| vacuolar protein sorting-associated protein 4 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 445

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST 91
           P R ++L GP G+GKS LA   + ++  T
Sbjct: 162 PWRGILLYGPPGTGKSYLAKAVATEADGT 190


>gi|320175333|gb|EFW50439.1| recombination factor protein RarA [Shigella dysenteriae CDC
           74-1112]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|312221596|emb|CBY01536.1| similar to BCS1-like ATPase [Leptosphaeria maculans]
          Length = 570

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 19/125 (15%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVIL-V 70
           +Q++ +P      +       +       +V    E        W      P R   L  
Sbjct: 230 QQQSYRPARPLSTISLDEQSKVR------IVKDINEYLHPATSRWYSERGIPYRRGYLLH 283

Query: 71  GPSGSGKSCL---------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           GP G+GK+ +          NI+     + + +  +   +   +  R  VLLED+D    
Sbjct: 284 GPPGTGKTSMSFALAGVFGMNIYCISLSAAQLTESSLMDNFNSLPDRCIVLLEDVDAAGL 343

Query: 122 NDTQL 126
               L
Sbjct: 344 RREDL 348


>gi|307150022|ref|YP_003885406.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306980250|gb|ADN12131.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 616

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 197 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCI 256

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 257 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 316

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD    ++++      R   +   +    I +R       
Sbjct: 317 ------LRPGRFDRQVVVDRPDYAGRKEILKVHA--RGKTLAADVDLDKIARRTP-GFTG 367

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 368 A-DLANLLNEAAILAARRNLT 387


>gi|297537653|ref|YP_003673422.1| type II secretion system protein E [Methylotenera sp. 301]
 gi|297257000|gb|ADI28845.1| type II secretion system protein E [Methylotenera sp. 301]
          Length = 560

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 8/41 (19%)

Query: 38  ISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKS 78
           +  DD        QA+ ++    + P  ++++ GP+GSGK+
Sbjct: 293 LGFDD--------QAIAMLRRLANEPYGMMLVTGPTGSGKT 325


>gi|240254262|ref|NP_175781.4| ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/
           nucleotide binding / peptidyl-prolyl cis-trans isomerase
           [Arabidopsis thaliana]
 gi|332194876|gb|AEE32997.1| 26S proteasome regulatory subunit T1 [Arabidopsis thaliana]
          Length = 598

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V+   GP GSGK+ +A   ++++ +     +   L    I     ++ E
Sbjct: 373 PKGVLC-YGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRE 423


>gi|218700590|ref|YP_002408219.1| recombination factor protein RarA [Escherichia coli IAI39]
 gi|218370576|emb|CAR18383.1| recombination protein [Escherichia coli IAI39]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|215486022|ref|YP_002328453.1| recombination factor protein RarA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312969040|ref|ZP_07783247.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 2362-75]
 gi|215264094|emb|CAS08436.1| recombination protein [Escherichia coli O127:H6 str. E2348/69]
 gi|312286442|gb|EFR14355.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 2362-75]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|242023637|ref|XP_002432238.1| 26S protease regulatory subunit, putative [Pediculus humanus
           corporis]
 gi|212517640|gb|EEB19500.1| 26S protease regulatory subunit, putative [Pediculus humanus
           corporis]
          Length = 426

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 201 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 260

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 261 KACVIFFDEIDAIGGARFDDGSGGVNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 320

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 321 DPALMRPGRLDRKVEFGLPDLEGR 344


>gi|213402523|ref|XP_002172034.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
           yFS275]
 gi|212000081|gb|EEB05741.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
           yFS275]
          Length = 389

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +          ++ ++    I     ++ E
Sbjct: 166 PPKGVLLYGPPGTGKTLLARAVASTLGVNFLKVVSSAIVDKYIGESARIIRE 217


>gi|194435164|ref|ZP_03067397.1| putative DNA recombination-associated ATPase RarA [Shigella
           dysenteriae 1012]
 gi|194416602|gb|EDX32738.1| putative DNA recombination-associated ATPase RarA [Shigella
           dysenteriae 1012]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|288559208|sp|Q9SSB4|PRS7B_ARATH RecName: Full=26S protease regulatory subunit 7 homolog B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT1b; AltName:
           Full=26S proteasome subunit 7 homolog B; AltName:
           Full=Regulatory particle triple-A ATPase subunit 1b
          Length = 464

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V+   GP GSGK+ +A   ++++ +     +   L    I     ++ E
Sbjct: 239 PKGVLC-YGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRE 289


>gi|11095437|gb|AAG29874.1| valosin-containing protein [Homo sapiens]
          Length = 305

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           PS+ V+  GP G GK+ LA   +++ ++   S     L ++     +  + E  D  
Sbjct: 138 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 194


>gi|6056389|gb|AAF02853.1|AC009324_2 Putative 26S proteasome ATPase subunit [Arabidopsis thaliana]
          Length = 451

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V+   GP GSGK+ +A   ++++ +     +   L    I     ++ E
Sbjct: 226 PKGVLC-YGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRE 276


>gi|73536993|ref|XP_847915.1| serine peptidase, Clan SJ, family S16 [Leishmania major strain
           Friedlin]
 gi|321438831|emb|CBZ12591.1| vacuolar protein sorting-associated protein 4 [Leishmania major
           strain Friedlin]
          Length = 445

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST 91
           P R ++L GP G+GKS LA   + ++  T
Sbjct: 162 PWRGILLYGPPGTGKSYLAKAVATEADGT 190


>gi|24112267|ref|NP_706777.1| recombination factor protein RarA [Shigella flexneri 2a str. 301]
 gi|30062379|ref|NP_836550.1| recombination factor protein RarA [Shigella flexneri 2a str. 2457T]
 gi|24051119|gb|AAN42484.1| putative polynucleotide enzyme [Shigella flexneri 2a str. 301]
 gi|30040625|gb|AAP16356.1| putative polynucleotide enzyme [Shigella flexneri 2a str. 2457T]
 gi|281600220|gb|ADA73204.1| putative polynucleotide enzyme [Shigella flexneri 2002017]
 gi|313650196|gb|EFS14608.1| ATPase family associated with various cellular activities (AAA)
           family protein [Shigella flexneri 2a str. 2457T]
 gi|332762947|gb|EGJ93197.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-671]
 gi|332768070|gb|EGJ98256.1| recombination factor [Shigella flexneri 2930-71]
 gi|333006695|gb|EGK26194.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri VA-6]
 gi|333021033|gb|EGK40291.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri K-304]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|187733902|ref|YP_001880910.1| recombination factor protein RarA [Shigella boydii CDC 3083-94]
 gi|187430894|gb|ACD10168.1| putative DNA recombination-associated ATPase RarA [Shigella boydii
           CDC 3083-94]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|331085639|ref|ZP_08334722.1| hypothetical protein HMPREF0987_01025 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406562|gb|EGG86067.1| hypothetical protein HMPREF0987_01025 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 271

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 20/116 (17%)

Query: 52  AVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDK-----------SRSTRFSNIAK 98
           A   +D+W       +  +  GP G+GKS +A   +++           + +T   +I  
Sbjct: 97  AKSYVDNWEEMKRNHIGCLFWGPVGTGKSFIAGCIANELLKQEVTVKMTNFNTIIDDIFP 156

Query: 99  SLDSI----LIDTRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTF 147
             D       + + + ++++D+ +   ++  L   F +I+   +    L++T    
Sbjct: 157 LADKTEYINALASYQLLIIDDLGVERNSEYALGIIFSVIDRRIRSGRPLIITTNLP 212


>gi|326529071|dbj|BAK00929.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 840

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   +++++++  +
Sbjct: 564 PCRGILLFGPPGTGKTMLAKAIANEAQASFIN 595


>gi|319406105|emb|CBI79735.1| glycerol-3-phosphate ABC transporter ATP-binding protein
           [Bartonella sp. AR 15-3]
          Length = 345

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           +++LVGPSG GKS L  I +      + ++    +D+  I+ R+P 
Sbjct: 32  LLVLVGPSGCGKSTLLRIIA---GLEQVTSGELYIDNEFINNREPA 74


>gi|319899241|ref|YP_004159334.1| glycerol-3-phosphate ABC transporter ATP-binding protein
           [Bartonella clarridgeiae 73]
 gi|319403205|emb|CBI76764.1| glycerol-3-phosphate ABC transporter ATP-binding protein
           [Bartonella clarridgeiae 73]
          Length = 345

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           +++LVGPSG GKS L  I +      + ++    +D+  I+ R+P 
Sbjct: 32  LLVLVGPSGCGKSTLLRIIA---GLEQVTSGELYIDNEFINNREPA 74


>gi|323344318|ref|ZP_08084544.1| AAA family ATPase [Prevotella oralis ATCC 33269]
 gi|323095047|gb|EFZ37622.1| AAA family ATPase [Prevotella oralis ATCC 33269]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 23/133 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVL- 112
            IL GP G GK+ LA I ++K  +  +               I ++  +   +T  P+L 
Sbjct: 42  FILWGPPGVGKTTLAQIIANKLETPFYTLSAVTSGVKDVRDAIERAKSNKFFNTASPILF 101

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +     L+ A T   S+ V  P L SR     +  + 
Sbjct: 102 IDEIHRFSKSQQDSLL----GAVERGVVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 153

Query: 172 LPDDDFLEKVIVK 184
             + + L  ++ +
Sbjct: 154 SLEKEDLLSLLER 166


>gi|308470578|ref|XP_003097522.1| CRE-RPT-4 protein [Caenorhabditis remanei]
 gi|308240039|gb|EFO83991.1| CRE-RPT-4 protein [Caenorhabditis remanei]
          Length = 492

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ ++    I     ++ E        
Sbjct: 269 PPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIRE-------- 320

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 321 ------MFNYARDHQ 329


>gi|308159567|gb|EFO62094.1| Spastin [Giardia lamblia P15]
          Length = 1115

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           S  +++ G  G GK+ L+ I + ++ +    
Sbjct: 781 SNTLLIYGAPGVGKTLLSRIIATETGALVID 811


>gi|297797479|ref|XP_002866624.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312459|gb|EFH42883.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 855

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 35  CLGISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVI------LVGPSGSGKSCLANIW 84
             G++ DD      +   +++ VR++ +   + ++ +       L GP G+GK+ LA   
Sbjct: 310 KTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAI 369

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           + ++    F+        + +      + +
Sbjct: 370 AGEAGLPFFAANGTDFVEMFVGVAASRVKD 399


>gi|298292990|ref|YP_003694929.1| ATP-dependent metalloprotease FtsH [Starkeya novella DSM 506]
 gi|296929501|gb|ADH90310.1| ATP-dependent metalloprotease FtsH [Starkeya novella DSM 506]
          Length = 639

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 65/199 (32%), Gaps = 43/199 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    F+        + +                   
Sbjct: 190 RGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 249

Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +            D  +  L  +   ++     +  +L+ A   P     
Sbjct: 250 CIIFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 309

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    E+++      R+I +   +   ++ R      
Sbjct: 310 AL------LRPGRFDRQVIVPNPDVVGREQILKVHA--RKIPVAPDVNLKVIARGTPGFS 361

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L +  +  AL     
Sbjct: 362 GA-DLANLCNEAALMAARR 379


>gi|325679018|ref|ZP_08158616.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 8]
 gi|324109522|gb|EGC03740.1| Holliday junction DNA helicase RuvB [Ruminococcus albus 8]
          Length = 345

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ LANI + +      +    +++           LE  D+L  ++ 
Sbjct: 65  VLLYGPPGLGKTTLANIIAREMGVNIRTTSGPAIEKPGDLAALLASLEKGDVLFIDEI 122


>gi|291234647|ref|XP_002737255.1| PREDICTED: proteasome 26S ATPase subunit 2-like [Saccoglossus
           kowalevskii]
          Length = 435

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 210 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 269

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 270 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 330 DPALMRPGRLDRKVEFGLPDLEGR 353


>gi|212696228|ref|ZP_03304356.1| hypothetical protein ANHYDRO_00764 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676857|gb|EEB36464.1| hypothetical protein ANHYDRO_00764 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 337

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ L+NI +++           +++           L+  D+L  ++   
Sbjct: 59  VLLQGPPGLGKTTLSNIIANELGVNIRITSGPAIERPSDLASILTNLDKGDVLFIDEI-- 116

Query: 127 FHIINSIHQY 136
            H IN   + 
Sbjct: 117 -HRINRSVEE 125


>gi|210608530|ref|ZP_03287903.1| hypothetical protein CLONEX_00082 [Clostridium nexile DSM 1787]
 gi|210152981|gb|EEA83987.1| hypothetical protein CLONEX_00082 [Clostridium nexile DSM 1787]
          Length = 443

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 24/155 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G+GK+ LA + ++ + +      A       ++       +++  +    T L
Sbjct: 55  IIFYGPPGTGKTTLAKVIANTTSAQFTQINATVAGKKDMEEVVRKAKDNL-GMYGQKTIL 113

Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + +L+ A T    + V    L SR   ++V ++    
Sbjct: 114 FVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNSA-LISR---SSVFELRALT 169

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIV 202
            + ++ ++ +   D        +  ID     ++ 
Sbjct: 170 KEDIKVLLKRAVYDEIKGMGSYRADIDDDALEFLA 204


>gi|212535740|ref|XP_002148026.1| membrane-spanning ATPase, putative [Penicillium marneffei ATCC
           18224]
 gi|210070425|gb|EEA24515.1| membrane-spanning ATPase, putative [Penicillium marneffei ATCC
           18224]
          Length = 425

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 146 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 176


>gi|167377096|ref|XP_001734281.1| vacuolar protein sorting-associating protein 4A [Entamoeba dispar
           SAW760]
 gi|165904312|gb|EDR29570.1| vacuolar protein sorting-associating protein 4A, putative
           [Entamoeba dispar SAW760]
          Length = 419

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           W    ++L GP G+GKS LA   + ++ ST +S  A SL S  +   + ++ E
Sbjct: 144 WTG--ILLFGPPGTGKSFLAKAVATEADSTFYSVSASSLLSKYLGESEKMVKE 194


>gi|153810289|ref|ZP_01962957.1| hypothetical protein RUMOBE_00670 [Ruminococcus obeum ATCC 29174]
 gi|149833468|gb|EDM88549.1| hypothetical protein RUMOBE_00670 [Ruminococcus obeum ATCC 29174]
          Length = 268

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 20/116 (17%)

Query: 52  AVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDK-----------SRSTRFSNIAK 98
           A   +D+W       +  +  GP G+GKS +A   +++           + +T   +I  
Sbjct: 97  AKSYVDNWEEMKRNHIGCLFWGPVGTGKSFIAGCIANELLKQEVTVKMTNFNTIIDDIFP 156

Query: 99  SLDSI----LIDTRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTF 147
             D       + + + ++++D+ +   ++  L   F +I+   +    L++T    
Sbjct: 157 LADKTEYINALASYQLLIIDDLGVERNSEYALGIIFSVIDRRIRSGRPLIITTNLP 212


>gi|146081038|ref|XP_001464172.1| hypothetical protein [Leishmania infantum JPCM5]
          Length = 945

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L G  GSGK+ LA   +++S +  F+
Sbjct: 684 LLLYGAPGSGKTLLAYAIANESGARFFN 711


>gi|116070597|ref|ZP_01467866.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
 gi|116066002|gb|EAU71759.1| Peptidase M41, FtsH [Synechococcus sp. BL107]
          Length = 599

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 39/196 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    FS  A     + +                   
Sbjct: 187 RGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEMFVGVGASRVRDLFRQAKEKAP 246

Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
             V +++ID +           ND       QL   ++   +    +L+ A         
Sbjct: 247 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEENSGVILLAATNRADVLDA 306

Query: 154 CLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
            L    +R  +    + + LPD      ++      R + +   L  +   R       A
Sbjct: 307 AL----TRPGRFDRRIDVGLPDRRGRAAILAVHARSRPLALAVNLEQW-ASRTP-GFSGA 360

Query: 213 EKLVDKMDNLALSRGM 228
             L + ++  A+    
Sbjct: 361 -DLANLLNEAAILAAR 375


>gi|115389874|ref|XP_001212442.1| vacuolar sorting protein 4b [Aspergillus terreus NIH2624]
 gi|114194838|gb|EAU36538.1| vacuolar sorting protein 4b [Aspergillus terreus NIH2624]
          Length = 748

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A +L S
Sbjct: 489 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 528


>gi|157134067|ref|XP_001663131.1| 26S protease regulatory subunit [Aedes aegypti]
 gi|108870627|gb|EAT34852.1| 26S protease regulatory subunit [Aedes aegypti]
          Length = 434

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 268

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 329 DPALMRPGRLDRKVEFGLPDLEGR 352


>gi|94451277|gb|ABF19812.1| rep [Porcine circovirus 1]
          Length = 312

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI--D 117
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 118 LLDFNDTQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L   +  +L        +           S+L+T+   P  W
Sbjct: 218 LPWGDLLRLCDRYPLTVETKGGTVPFLARSILITSNRAPQEW 259


>gi|517390|emb|CAA56097.1| cdcH [Halobacterium salinarum]
          Length = 742

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 63/165 (38%), Gaps = 37/165 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ LA   ++++ ++ FS     +                +    D
Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDD 281

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTA--RTFPVSWG 152
           +   + ++++D +                 QL  +++ +      +++ A  R   V   
Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPA 341

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
           +  P    R      ++I +PD+   E+++      R + +   +
Sbjct: 342 LRRP---GRFD--REIEIGVPDEIGREEIL--KIHTRGMPLSDDV 379



 Score = 36.7 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   V+L GP G+GK+ +A   ++++ +   S
Sbjct: 495 PPAGVLLYGPPGTGKTLMAKAVANETNANFIS 526


>gi|54022362|ref|YP_116604.1| putative cell division protein [Nocardia farcinica IFM 10152]
 gi|54013870|dbj|BAD55240.1| putative cell division protein [Nocardia farcinica IFM 10152]
          Length = 796

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 65/211 (30%), Gaps = 45/211 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GP G+GK+ LA   + ++    F+        + +                     
Sbjct: 204 VLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCI 263

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++        +L+ A   P      L
Sbjct: 264 IFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRTGIILIAATNRPDILDPAL 323

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR-MERSLVF 211
                 L+       + +  PD      ++      + I  D  L   + +R +  S   
Sbjct: 324 ------LRPGRFDRQIPVGNPDLAGRRAILRVHSQGKPISPDADL-DGLAKRTVGMSGAD 376

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
              +   ++  AL         +  E L+E+
Sbjct: 377 LANV---INEAALLTARENGAVITGEALEES 404


>gi|152967765|ref|YP_001363549.1| ABC transporter transmembrane protein [Kineococcus radiotolerans
           SRS30216]
 gi|151362282|gb|ABS05285.1| ABC transporter transmembrane region [Kineococcus radiotolerans
           SRS30216]
          Length = 605

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 37/189 (19%)

Query: 63  PSRVVILVGPSGSGKS----CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           P + V +VGP+G+GK+     L   +   S       +  +  S      +  ++     
Sbjct: 386 PGQTVAIVGPTGAGKTTLVNLLLRYYEVTSGRILLDGVDTATMSRAELRSRAAIV----- 440

Query: 119 LDFNDTQLFH---IINSIH----QYDSSLLMTARTF---------PVSWGVCLPDLCSRL 162
               DT LF      N  +       + +L  AR           P  +   + D   R+
Sbjct: 441 --LQDTWLFQGTIAENIAYARPSASGAEVLEAARAASVDTVVATLPEGFQTVVDDDAGRI 498

Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
            A         +   +      +   R + +D+  ++ +  R ER +  A   +   D  
Sbjct: 499 SAG--------EKQLITIARAHLARPRVLVLDEATSS-VDTRTERVVQRAMAALRA-DRT 548

Query: 223 ALSRGMGIT 231
           +L     ++
Sbjct: 549 SLVIAHRLS 557


>gi|67477198|ref|XP_654105.1| vacuolar sorting protein VPS4 [Entamoeba histolytica HM-1:IMSS]
 gi|56471127|gb|EAL48719.1| vacuolar sorting protein VPS4, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 419

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           W    ++L GP G+GKS LA   + ++ ST +S  A SL S  +   + ++ E
Sbjct: 144 WTG--ILLFGPPGTGKSFLAKAVATEADSTFYSVSASSLLSKYLGESEKMVKE 194


>gi|332760457|gb|EGJ90746.1| ATPase family associated with various cellular activities family
           protein [Shigella flexneri 2747-71]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|320180609|gb|EFW55538.1| recombination factor protein RarA [Shigella boydii ATCC 9905]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|317029323|ref|XP_001391351.2| chromosome transmission fidelity protein 18 [Aspergillus niger CBS
           513.88]
          Length = 1040

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 368 KVLLLCGPPGLGKTTLAHVCARQAG 392


>gi|294630627|ref|ZP_06709187.1| cell division protein [Streptomyces sp. e14]
 gi|292833960|gb|EFF92309.1| cell division protein [Streptomyces sp. e14]
          Length = 668

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 49/204 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 255

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 256 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 315

Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197
                         PD+  RL+   V +   P   D  L  V  +        +   L  
Sbjct: 316 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLAAVARRTPGFTGADLSNVLNE 375

Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221
           AA +  R ++ L+  + L + +D 
Sbjct: 376 AALLTARSDQKLIDNKMLDEAIDR 399


>gi|293414174|ref|ZP_06656823.1| replication-associated recombination protein A [Escherichia coli
           B185]
 gi|291434232|gb|EFF07205.1| replication-associated recombination protein A [Escherichia coli
           B185]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|297737725|emb|CBI26926.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P R++ ++GPSGSGK+ L N+ + +  +
Sbjct: 106 PGRLLAIMGPSGSGKTTLLNVLAGQLMA 133


>gi|256020980|ref|ZP_05434845.1| recombination factor protein RarA [Shigella sp. D9]
 gi|332282205|ref|ZP_08394618.1| recombination protein [Shigella sp. D9]
 gi|332104557|gb|EGJ07903.1| recombination protein [Shigella sp. D9]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|253751644|ref|YP_003024785.1| plasmid replication protein [Streptococcus suis SC84]
 gi|253753546|ref|YP_003026687.1| plasmid replication protein [Streptococcus suis P1/7]
 gi|251815933|emb|CAZ51547.1| putative plasmid replication protein [Streptococcus suis SC84]
 gi|251819792|emb|CAR45711.1| putative plasmid replication protein [Streptococcus suis P1/7]
          Length = 406

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 27/51 (52%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++ L GPSG+GKS L   ++       ++  +       + +++ +++E+I
Sbjct: 212 IIWLYGPSGTGKSRLCKHFAKSLGKPFYTTGSSRDPFQNVASQETIIIEEI 262


>gi|255713214|ref|XP_002552889.1| KLTH0D03806p [Lachancea thermotolerans]
 gi|238934269|emb|CAR22451.1| KLTH0D03806p [Lachancea thermotolerans]
          Length = 405

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 184 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRE 231


>gi|284032636|ref|YP_003382567.1| Mg chelatase subunit ChlI [Kribbella flavida DSM 17836]
 gi|283811929|gb|ADB33768.1| Mg chelatase, subunit ChlI [Kribbella flavida DSM 17836]
          Length = 526

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 17  KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG 76
             + P+ +   +  S  R   +  DD+L      +  R I++  +     + L GP GSG
Sbjct: 175 DEEPPRAEPRLMSESLTRVPEVDLDDVL---GQREGRRAIEAAAAG-GHHLYLHGPPGSG 230

Query: 77  KSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           K+ LA      +         +SL+   + +   +L  D +L+
Sbjct: 231 KTMLA---ERLAGLMPDLETEESLEVSAVHSLAGLLTNDAELV 270


>gi|255656789|ref|ZP_05402198.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-23m63]
 gi|296452381|ref|ZP_06894082.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP08]
 gi|296877730|ref|ZP_06901757.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP07]
 gi|296258711|gb|EFH05605.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP08]
 gi|296431263|gb|EFH17083.1| crossover junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile NAP07]
          Length = 339

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I +++           +++           L + D+L  ++   
Sbjct: 61  VLLYGPPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLNENDVLFIDEI-- 118

Query: 127 FHIINSIHQY 136
            H IN   + 
Sbjct: 119 -HRINRSVEE 127


>gi|225424174|ref|XP_002284094.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 728

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P R++ ++GPSGSGK+ L N+ + +  +
Sbjct: 106 PGRLLAIMGPSGSGKTTLLNVLAGQLMA 133


>gi|213405999|ref|XP_002173771.1| checkpoint protein rad17 [Schizosaccharomyces japonicus yFS275]
 gi|212001818|gb|EEB07478.1| checkpoint protein rad17 [Schizosaccharomyces japonicus yFS275]
          Length = 520

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 12/71 (16%)

Query: 42  DLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95
           DL VH A   AVR      +W       SR+++L GPSG GKS    + + +  ++    
Sbjct: 84  DLAVHKAKVTAVR------NWMKEDHSSSRLLVLSGPSGCGKSTCVEVLARELNASLIEW 137

Query: 96  IAKSLDSILID 106
              SLD+  +D
Sbjct: 138 SNPSLDAGAVD 148


>gi|167043419|gb|ABZ08121.1| putative ATPase family associated with various cellular activities
           (AAA) [uncultured marine microorganism HF4000_APKG1C9]
          Length = 412

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P + V++ GP G+GK+ LA   ++ +++T    +   L    I     ++ E  DL    
Sbjct: 187 PPKGVLITGPPGTGKTMLAKAVANSTQATFLGLVGSELAQKYIGEGGRMVRELFDLARKR 246

Query: 123 DTQL 126
              +
Sbjct: 247 APAI 250


>gi|170114933|ref|XP_001888662.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164636357|gb|EDR00653.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 438

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + +++ST FS  +  L
Sbjct: 166 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDL 203


>gi|116584323|gb|ABK00515.1| ORF1 [Human parvovirus 4]
 gi|116584326|gb|ABK00517.1| ORF1 [Human parvovirus 4]
 gi|164710074|gb|ABY67676.1| non-structural protein [Human parvovirus 4]
          Length = 663

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 58  SWPS--WPSRVVI-LVGPSGSGKSCLANIWSDKS 88
           +W    WP R  I L GP+ +GK+ LA   ++ S
Sbjct: 318 AWARGVWPKRRAIWLWGPASTGKTLLAAAIANLS 351


>gi|146318518|ref|YP_001198230.1| replication initiator protein [Streptococcus suis 05ZYH33]
 gi|146320712|ref|YP_001200423.1| replication initiator protein [Streptococcus suis 98HAH33]
 gi|145689324|gb|ABP89830.1| putative replication initiator protein [Streptococcus suis 05ZYH33]
 gi|145691518|gb|ABP92023.1| putative replication initiator protein [Streptococcus suis 98HAH33]
          Length = 422

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 27/51 (52%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++ L GPSG+GKS L   ++       ++  +       + +++ +++E+I
Sbjct: 228 IIWLYGPSGTGKSRLCKHFAKSLGKPFYTTGSSRDPFQNVASQETIIIEEI 278


>gi|134075822|emb|CAK39356.1| unnamed protein product [Aspergillus niger]
          Length = 1080

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 458 KVLLLCGPPGLGKTTLAHVCARQAG 482


>gi|115374427|ref|ZP_01461709.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1]
 gi|115368519|gb|EAU67472.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1]
          Length = 671

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 49/206 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 225 VLLVGPPGTGKTLLARAVAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFGQATAKAPCI 284

Query: 111 VLLEDIDLLDF----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + ++++D +            ++      QL   ++        +++ A   P      L
Sbjct: 285 IFIDELDAIGKSRNSGVAGGHDEREQTLNQLLAEMDGFDGRTGLIILAATNRPEILDSAL 344

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 ++       V +  PD    E+V+      RQ+ +   +    +  R       
Sbjct: 345 ------MRPGRFDRQVLVDRPDKRGRERVLE--IHSRQVKLGPDVDLKGLAARTP-GFAG 395

Query: 212 AEKLVDKMDNLALSRGMG----ITRS 233
           A  L + ++  AL         +TR+
Sbjct: 396 A-DLANVVNEAALLAARRNRDAVTRA 420


>gi|56750248|ref|YP_170949.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
 gi|56685207|dbj|BAD78429.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
          Length = 627

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++R   FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEARVPFFSISGSEFVELFVGAGAARVRDLFEQAKQKAPCI 268

Query: 111 VLLEDIDLL----------DFNDT------QLFHIINSIHQYDSSL-LMTARTFPVSWGV 153
           V ++++D +            ND       QL   ++      +++ ++ A   P +   
Sbjct: 269 VFIDELDAIGKSRASGNFMGGNDEREQTLNQLLTEMDGFSADGATVIVLAATNRPETLDP 328

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209
            L      L+       V +  PD    + ++      R++ +D ++    I  R   S 
Sbjct: 329 AL------LRPGRFDRQVLVDRPDLAGRKAILD--IYGRKVKLDPEVDLQAIAVRT--SG 378

Query: 210 VFAEKLVDKMDNLALSRGM 228
                L + ++  AL    
Sbjct: 379 FAGADLANLINEAALLAAR 397


>gi|17865457|sp|O82150|FTSH_TOBAC RecName: Full=ATP-dependent zinc metalloprotease FTSH,
           chloroplastic; AltName: Full=DS9; Flags: Precursor
 gi|5804782|dbj|BAA33755.2| chloroplast FtsH protease [Nicotiana tabacum]
          Length = 714

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 290 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 336


>gi|110635505|ref|YP_675713.1| Holliday junction DNA helicase B [Mesorhizobium sp. BNC1]
 gi|122965617|sp|Q11DH7|RUVB_MESSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|110286489|gb|ABG64548.1| Holliday junction DNA helicase subunit RuvB [Chelativorans sp.
           BNC1]
          Length = 345

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 29/202 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+ VGP G GK+ LA I + +      S     +            LE+ D+L  ++   
Sbjct: 56  VLFVGPPGLGKTTLAQIMARELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEI-- 113

Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAATV---- 167
            H +N   +        D  L +     P +  V + DL         +RL   T     
Sbjct: 114 -HRLNPAVEEILYPAMEDYQLDLIIGEGPAARSVKI-DLAKFTLVAATTRLGLLTTPLRD 171

Query: 168 -----VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222
                +++     D L+ ++ +      + + +  A  I +R   +   A +L+ ++ + 
Sbjct: 172 RFGIPIRLEFYTVDELQAIVTRGARIMGMPLAEDGAEEIARRARGTPRIAGRLLRRVRDF 231

Query: 223 ALSRGMG-ITRSLAAEVLKETQ 243
           A   G   +TR +A   L   +
Sbjct: 232 AYVAGAENVTRQIADAALSRLE 253


>gi|15830231|ref|NP_309004.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128859|ref|NP_415412.1| recombination protein involved in processing recombnation
           intermediates at replication forks [Escherichia coli
           str. K-12 substr. MG1655]
 gi|26246918|ref|NP_752958.1| recombination factor protein RarA [Escherichia coli CFT073]
 gi|82777586|ref|YP_403935.1| recombination factor protein RarA [Shigella dysenteriae Sd197]
 gi|89107742|ref|AP_001522.1| recombination protein [Escherichia coli str. K-12 substr. W3110]
 gi|110641092|ref|YP_668822.1| recombination factor protein RarA [Escherichia coli 536]
 gi|157160415|ref|YP_001457733.1| recombination factor protein RarA [Escherichia coli HS]
 gi|168752126|ref|ZP_02777148.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756983|ref|ZP_02781990.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762974|ref|ZP_02787981.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769885|ref|ZP_02794892.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776257|ref|ZP_02801264.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|168783802|ref|ZP_02808809.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787320|ref|ZP_02812327.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC869]
 gi|168801426|ref|ZP_02826433.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC508]
 gi|170080550|ref|YP_001729870.1| recombination protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170682500|ref|YP_001744278.1| recombination factor protein RarA [Escherichia coli SMS-3-5]
 gi|191172124|ref|ZP_03033668.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           F11]
 gi|193070763|ref|ZP_03051698.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E110019]
 gi|194438737|ref|ZP_03070824.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           101-1]
 gi|195939555|ref|ZP_03084937.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208815727|ref|ZP_03256906.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822111|ref|ZP_03262430.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397045|ref|YP_002269565.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918141|ref|YP_002292225.1| recombination factor protein RarA [Escherichia coli SE11]
 gi|217324512|ref|ZP_03440596.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218548414|ref|YP_002382205.1| recombination factor protein RarA [Escherichia fergusonii ATCC
           35469]
 gi|218688680|ref|YP_002396892.1| recombination factor protein RarA [Escherichia coli ED1a]
 gi|218704321|ref|YP_002411840.1| recombination factor protein RarA [Escherichia coli UMN026]
 gi|227884141|ref|ZP_04001946.1| recombination ATPase [Escherichia coli 83972]
 gi|238900150|ref|YP_002925946.1| recombination protein [Escherichia coli BW2952]
 gi|253774079|ref|YP_003036910.1| recombination factor protein RarA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161006|ref|YP_003044114.1| recombination factor protein RarA [Escherichia coli B str. REL606]
 gi|254792092|ref|YP_003076929.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           TW14359]
 gi|256023407|ref|ZP_05437272.1| recombination factor protein RarA [Escherichia sp. 4_1_40B]
 gi|261227397|ref|ZP_05941678.1| recombination protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256180|ref|ZP_05948713.1| recombination protein [Escherichia coli O157:H7 str. FRIK966]
 gi|293404199|ref|ZP_06648193.1| recombination factor protein RarA [Escherichia coli FVEC1412]
 gi|293409270|ref|ZP_06652846.1| conserved hypothetical protein [Escherichia coli B354]
 gi|297518812|ref|ZP_06937198.1| recombination factor protein RarA [Escherichia coli OP50]
 gi|298379980|ref|ZP_06989585.1| replication-associated recombination protein A [Escherichia coli
           FVEC1302]
 gi|306812652|ref|ZP_07446845.1| recombination factor protein RarA [Escherichia coli NC101]
 gi|307137520|ref|ZP_07496876.1| recombination factor protein RarA [Escherichia coli H736]
 gi|309784009|ref|ZP_07678653.1| ATPase family associated with various cellular activities (AAA)
           family protein [Shigella dysenteriae 1617]
 gi|331641413|ref|ZP_08342548.1| replication-associated recombination protein A [Escherichia coli
           H736]
 gi|331646159|ref|ZP_08347262.1| replication-associated recombination protein A [Escherichia coli
           M605]
 gi|331651911|ref|ZP_08352930.1| replication-associated recombination protein A [Escherichia coli
           M718]
 gi|331656964|ref|ZP_08357926.1| replication-associated recombination protein A [Escherichia coli
           TA206]
 gi|331662307|ref|ZP_08363230.1| replication-associated recombination protein A [Escherichia coli
           TA143]
 gi|331667266|ref|ZP_08368131.1| replication-associated recombination protein A [Escherichia coli
           TA271]
 gi|331672433|ref|ZP_08373223.1| replication-associated recombination protein A [Escherichia coli
           TA280]
 gi|331676679|ref|ZP_08377375.1| replication-associated recombination protein A [Escherichia coli
           H591]
 gi|331682401|ref|ZP_08383020.1| replication-associated recombination protein A [Escherichia coli
           H299]
 gi|77416799|sp|P0AAZ6|RARA_ECO57 RecName: Full=Replication-associated recombination protein A
 gi|77416800|sp|P0AAZ5|RARA_ECOL6 RecName: Full=Replication-associated recombination protein A
 gi|77416801|sp|P0AAZ4|RARA_ECOLI RecName: Full=Replication-associated recombination protein A
 gi|321160007|pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|321160008|pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|321160009|pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|321160010|pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
           Mgsa
 gi|26107318|gb|AAN79501.1|AE016758_105 Hypothetical protein ycaJ [Escherichia coli CFT073]
 gi|1787119|gb|AAC73978.1| recombination protein involved in processing recombnation
           intermediates at replication forks [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062469|dbj|BAA35617.1| recombination protein [Escherichia coli str. K12 substr. W3110]
 gi|13360436|dbj|BAB34400.1| putative polynucleotide enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|81241734|gb|ABB62444.1| putative polynucleotide enzyme [Shigella dysenteriae Sd197]
 gi|110342684|gb|ABG68921.1| putative polynucleotide enzyme [Escherichia coli 536]
 gi|157066095|gb|ABV05350.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           HS]
 gi|169888385|gb|ACB02092.1| recombination protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170520218|gb|ACB18396.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           SMS-3-5]
 gi|187768384|gb|EDU32228.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|188013952|gb|EDU52074.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998918|gb|EDU67904.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355914|gb|EDU74333.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361172|gb|EDU79591.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366832|gb|EDU85248.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372743|gb|EDU91159.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC869]
 gi|189376426|gb|EDU94842.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC508]
 gi|190907651|gb|EDV67246.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           F11]
 gi|192955956|gb|EDV86424.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           E110019]
 gi|194422369|gb|EDX38369.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           101-1]
 gi|208732375|gb|EDZ81063.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737596|gb|EDZ85279.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158445|gb|ACI35878.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209775028|gb|ACI85826.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775030|gb|ACI85827.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775032|gb|ACI85828.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775034|gb|ACI85829.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209775036|gb|ACI85830.1| putative polynucleotide enzyme [Escherichia coli]
 gi|209911400|dbj|BAG76474.1| putative polynucleotide enzyme [Escherichia coli SE11]
 gi|217320733|gb|EEC29157.1| putative DNA recombination-associated ATPase RarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218355955|emb|CAQ88571.1| recombination protein [Escherichia fergusonii ATCC 35469]
 gi|218426244|emb|CAR07069.1| recombination protein [Escherichia coli ED1a]
 gi|218431418|emb|CAR12296.1| recombination protein [Escherichia coli UMN026]
 gi|222032626|emb|CAP75365.1| Uncharacterized protein ycaJ [Escherichia coli LF82]
 gi|227838893|gb|EEJ49359.1| recombination ATPase [Escherichia coli 83972]
 gi|238863427|gb|ACR65425.1| recombination protein [Escherichia coli BW2952]
 gi|242376707|emb|CAQ31420.1| recombination factor [Escherichia coli BL21(DE3)]
 gi|253325123|gb|ACT29725.1| AAA ATPase central domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972907|gb|ACT38578.1| recombination protein [Escherichia coli B str. REL606]
 gi|253977121|gb|ACT42791.1| recombination protein [Escherichia coli BL21(DE3)]
 gi|254591492|gb|ACT70853.1| recombination protein [Escherichia coli O157:H7 str. TW14359]
 gi|260449962|gb|ACX40384.1| AAA ATPase central domain protein [Escherichia coli DH1]
 gi|284920745|emb|CBG33808.1| putative ATPase [Escherichia coli 042]
 gi|291428785|gb|EFF01810.1| recombination factor protein RarA [Escherichia coli FVEC1412]
 gi|291469738|gb|EFF12222.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298279678|gb|EFI21186.1| replication-associated recombination protein A [Escherichia coli
           FVEC1302]
 gi|305853415|gb|EFM53854.1| recombination factor protein RarA [Escherichia coli NC101]
 gi|307552734|gb|ADN45509.1| hypothetical protein with a putative UvrD-like DNA helicase domain
           [Escherichia coli ABU 83972]
 gi|308928152|gb|EFP73615.1| ATPase family associated with various cellular activities (AAA)
           family protein [Shigella dysenteriae 1617]
 gi|309701168|emb|CBJ00468.1| putative ATPase [Escherichia coli ETEC H10407]
 gi|312945415|gb|ADR26242.1| recombination factor protein RarA [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315135540|dbj|BAJ42699.1| recombination factor protein RarA [Escherichia coli DH1]
 gi|320192621|gb|EFW67262.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320202287|gb|EFW76858.1| recombination factor protein RarA [Escherichia coli EC4100B]
 gi|320637762|gb|EFX07554.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           G5101]
 gi|320642886|gb|EFX12087.1| recombination factor protein RarA [Escherichia coli O157:H- str.
           493-89]
 gi|320648343|gb|EFX16998.1| recombination factor protein RarA [Escherichia coli O157:H- str. H
           2687]
 gi|320654181|gb|EFX22249.1| recombination factor protein RarA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659805|gb|EFX27361.1| recombination factor protein RarA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320664274|gb|EFX31425.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323937998|gb|EGB34260.1| ATPase [Escherichia coli E1520]
 gi|323942808|gb|EGB38973.1| ATPase [Escherichia coli E482]
 gi|323962940|gb|EGB58513.1| ATPase [Escherichia coli H489]
 gi|323969606|gb|EGB64893.1| ATPase [Escherichia coli TA007]
 gi|323976721|gb|EGB71809.1| ATPase [Escherichia coli TW10509]
 gi|324113811|gb|EGC07786.1| ATPase [Escherichia fergusonii B253]
 gi|326338212|gb|EGD62041.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           1125]
 gi|326346189|gb|EGD69927.1| recombination factor protein RarA [Escherichia coli O157:H7 str.
           1044]
 gi|330910674|gb|EGH39184.1| ATPase, AAA family [Escherichia coli AA86]
 gi|331038211|gb|EGI10431.1| replication-associated recombination protein A [Escherichia coli
           H736]
 gi|331044911|gb|EGI17038.1| replication-associated recombination protein A [Escherichia coli
           M605]
 gi|331050189|gb|EGI22247.1| replication-associated recombination protein A [Escherichia coli
           M718]
 gi|331055212|gb|EGI27221.1| replication-associated recombination protein A [Escherichia coli
           TA206]
 gi|331060729|gb|EGI32693.1| replication-associated recombination protein A [Escherichia coli
           TA143]
 gi|331065622|gb|EGI37515.1| replication-associated recombination protein A [Escherichia coli
           TA271]
 gi|331070339|gb|EGI41704.1| replication-associated recombination protein A [Escherichia coli
           TA280]
 gi|331075368|gb|EGI46666.1| replication-associated recombination protein A [Escherichia coli
           H591]
 gi|331080032|gb|EGI51211.1| replication-associated recombination protein A [Escherichia coli
           H299]
 gi|332342281|gb|AEE55615.1| recombination factor protein RarA [Escherichia coli UMNK88]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|328773002|gb|EGF83039.1| hypothetical protein BATDEDRAFT_33940 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 402

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +          ++ ++    I     ++ E
Sbjct: 179 PPKGVLLYGPPGTGKTLLARAVAATLECNFLKVVSSAIVDKYIGESARLIRE 230


>gi|326388123|ref|ZP_08209726.1| recombination factor protein RarA [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326207289|gb|EGD58103.1| recombination factor protein RarA [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 443

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G+GK+ +A + +D       S  A    S + D RK     +        T L
Sbjct: 62  MILWGPPGTGKTSIARLLADAVGMRYVSISAVF--SGVADLRKAFAEAESMAGLGRRTLL 119

Query: 127 F----HIINSIHQYD 137
           F    H  N   Q  
Sbjct: 120 FVDEIHRFNRAQQDG 134


>gi|320538018|ref|ZP_08037922.1| recombination factor protein Rar [Treponema phagedenis F0421]
 gi|320145134|gb|EFW36846.1| recombination factor protein Rar [Treponema phagedenis F0421]
          Length = 732

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           VI  GP G+GK+ LA + ++ ++S   S  A       I        E+  L D   T L
Sbjct: 53  VIFFGPPGTGKTTLARVIANHTKSNFLSLNAVLAGVQQIREAISKAEENKQLYDRR-TIL 111

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + + + A T    + V    L SR   + V ++++  
Sbjct: 112 FVDEVHRWNRAQQDALLPWVENGTIIFIGATTENPFFEVNKA-LVSR---SRVFQLTVLT 167

Query: 175 DDFLEKVIVKMFAD 188
           D  L K   +   D
Sbjct: 168 DSDLAKAAERALTD 181


>gi|318060858|ref|NP_001188134.1| 26S protease regulatory subunit 8 [Ictalurus punctatus]
 gi|308323111|gb|ADO28692.1| 26S protease regulatory subunit 8 [Ictalurus punctatus]
          Length = 430

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 210 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 257


>gi|304406898|ref|ZP_07388552.1| Vesicle-fusing ATPase [Paenibacillus curdlanolyticus YK9]
 gi|304343885|gb|EFM09725.1| Vesicle-fusing ATPase [Paenibacillus curdlanolyticus YK9]
          Length = 522

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + ++L GP G+GK+ LA   +  + S   +        + +      + +
Sbjct: 106 PMKGILLTGPPGTGKTLLAKAAAQYTDSVFLAASGSEFVEMYVGVGASRVRD 157


>gi|295815784|gb|ADG36376.1| Rep [Porcine circovirus 2]
          Length = 314

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  ++D   +       K  D       + V+++D    
Sbjct: 163 RDWKTNVHVIVGPPGCGKSKWAANFADPETTYWKPPRNKWWDG--YHGEEVVVIDDFYGR 220

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P+ W
Sbjct: 221 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEW 262


>gi|296420764|ref|XP_002839938.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636146|emb|CAZ84129.1| unnamed protein product [Tuber melanosporum]
          Length = 422

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 27/162 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDS---ILIDTRKPVLL------ 113
             +IL G +G GK+ +A + +  S  R    S  A  ++    I I+ +  ++L      
Sbjct: 31  PSMILWGAAGCGKTTIARVIAAMSSCRFIEISATASGVNDCKKIFIEAKNELVLTGRRTI 90

Query: 114 ---EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
              ++I         +F    +  +     L+ A T   S+ V    L SR +   + K+
Sbjct: 91  LFCDEIHRYTKAQQDVFL---APVEKGEITLIGATTENPSFKVQSA-LLSRCRTFALNKL 146

Query: 171 SLPDDD--FLEKVI-VKMFADRQIF------IDKKLAAYIVQ 203
           S  D +      ++   +  +++        +D  +  Y+ +
Sbjct: 147 SQADIESILHRALLSESLLDEKKGHTVVSKLLDTSMIEYLAR 188


>gi|290992604|ref|XP_002678924.1| DNA replication factor C protein [Naegleria gruberi]
 gi|284092538|gb|EFC46180.1| DNA replication factor C protein [Naegleria gruberi]
          Length = 1003

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           +++++ GP G GK+ LA+I + ++        A  
Sbjct: 398 KILLIAGPPGIGKTTLAHIAAKQAGYEPIEVNASD 432


>gi|251778022|ref|ZP_04820942.1| dnaC family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082337|gb|EES48227.1| dnaC family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 327

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 21/119 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----------------LIDTRK 109
           ++  G  GSGK+ L+   S       +  + K+ D +                 L+    
Sbjct: 186 LLFFGNPGSGKTYLSYCLSKAILDKGYLVVYKTSDELIKNLSEIRFNNNHNLESLLLNCD 245

Query: 110 PVLLEDIDLLDFND---TQLFHIIN-SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
            ++++D+     N+   T+LF+IIN  I      L+ T  T P         + SRL  
Sbjct: 246 LLIIDDLGAEHLNEFSITELFNIINKRILNKKKMLISTNLTLPGITKQYTERIASRLLG 304


>gi|238919012|ref|YP_002932526.1| ATP-dependent protease ATP-binding subunit ClpX [Edwardsiella
           ictaluri 93-146]
 gi|238868581|gb|ACR68292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX, putative
           [Edwardsiella ictaluri 93-146]
          Length = 435

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 28/109 (25%)

Query: 29  FFSFPRCLGISRDDLLVHS------------------AIEQAVRLIDSWPSWPSRVVILV 70
               P  +    DD ++                        A   ++         ++L+
Sbjct: 75  ALPTPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDASNGVEL----GKSNILLI 130

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           GP+GSGK+ LA   +      R  ++  ++      T    + ED++ +
Sbjct: 131 GPTGSGKTLLAETLA------RLLDVPFTMADATTLTEAGYVGEDVENI 173


>gi|256826813|ref|YP_003150772.1| ABC-type multidrug transporter ATPase and permease [Cryptobacterium
           curtum DSM 15641]
 gi|256582956|gb|ACU94090.1| ABC-type multidrug transport system, ATPase and permease component
           [Cryptobacterium curtum DSM 15641]
          Length = 596

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-VLLEDIDLL 119
              +  LVGPSGSGKS LA + +      +   S    +L+    D     ++  D D  
Sbjct: 379 SGHITALVGPSGSGKSTLARLIAGFWDPNTGTVSIGGCTLEEFTADQLAAQIVYVDQDSY 438

Query: 120 DFNDTQLFHIINSIH 134
            F+DT    I+NSI 
Sbjct: 439 LFDDT----IMNSIR 449


>gi|303285798|ref|XP_003062189.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456600|gb|EEH53901.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 417

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           V+L GP G+GK+ +A   + ++RS  +       ++  +    P+L+
Sbjct: 189 VLLYGPPGTGKTLIARTCAAQARSYSYWFPYDPTNATFLKLAGPLLV 235


>gi|289809697|ref|ZP_06540326.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 254

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 31  DIIREEIKEVAPHRERSALPT----------PHEIRTHLDDYVIGQEQAKKVLAVAVYNH 80

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 81  YKRLRNGDTSNGVELGKSNILLTGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 134

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 135 EAGYVGEDVENI 146


>gi|218190620|gb|EEC73047.1| hypothetical protein OsI_06998 [Oryza sativa Indica Group]
 gi|222622734|gb|EEE56866.1| hypothetical protein OsJ_06499 [Oryza sativa Japonica Group]
          Length = 442

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   +  + +     +        +    P ++ D+  L 
Sbjct: 199 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL-GEGPRMVRDVFRLA 255


>gi|213853069|ref|ZP_03382601.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 201

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRTHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLTGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|213419495|ref|ZP_03352561.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 265

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRTHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLTGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|213022389|ref|ZP_03336836.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 168

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRTHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLTGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|254455364|ref|ZP_05068793.1| ATP-dependent Zn protease [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082366|gb|EDZ59792.1| ATP-dependent Zn protease [Candidatus Pelagibacter sp. HTCC7211]
          Length = 614

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           R  +LVGP G+GK+ LA   + ++ 
Sbjct: 168 RGALLVGPPGTGKTLLARAIAGEAG 192


>gi|254459950|ref|ZP_05073366.1| AAA ATPase, central region [Rhodobacterales bacterium HTCC2083]
 gi|206676539|gb|EDZ41026.1| AAA ATPase, central region [Rhodobacteraceae bacterium HTCC2083]
          Length = 436

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 31/199 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++  GP G GK+ +A + + ++     + S I   +  +            I   +   T
Sbjct: 57  IVFWGPPGVGKTTIARLLAHETELHFVQISAIFTGMPDLRKVFEGA----KIRRQNGQGT 112

Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170
            LF    H  N   Q          ++L+   T           +      L  A V+ +
Sbjct: 113 LLFVDEIHRFNKAQQDGFLPYMEDGTILLVGATTENPSFELNSAV------LSRAQVLVL 166

Query: 171 SLPDDDFLEKVIVKMFA--DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228
              D   LE++  +     D+++ +D      +++  +        L++++   A     
Sbjct: 167 ERLDLADLERMAQRAEQELDKELPLDGPAREALLEMADGDGRALLNLIEQV--AAWKTDH 224

Query: 229 GITRS-LAAEVLKETQQCD 246
            +T   L+  + K   Q D
Sbjct: 225 KLTPPELSKRLQKRAAQYD 243


>gi|190892924|ref|YP_001979466.1| ATP-dependent hydrolase [Rhizobium etli CIAT 652]
 gi|190698203|gb|ACE92288.1| putative ATP-dependent hydrolase protein [Rhizobium etli CIAT 652]
          Length = 621

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 48/206 (23%)

Query: 67  VILVGPSGSGKSCLANI----------------WSDKSR-STRFSNIAKSLDSILIDTRK 109
           ++L GP G+GK+  A                  W  K       + + K+          
Sbjct: 230 LLLSGPPGTGKTMFAQAVAKTCGAAFVTASCATWQAKGHLGDFLAAMRKTFSEAAEKAPC 289

Query: 110 PVLLEDIDLLDFNDTQLF---------HIINSIHQY-------DSSLLMTARTFPVSWGV 153
            + L++ D +   D   F          ++N I +        D  +++ A  +P +   
Sbjct: 290 ILFLDEFDAVG--DRAKFRGDNANYCVQVVNGILEALDGSPRRDGVVVIAATNYPDAID- 346

Query: 154 CLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211
             P L    RL     +K+ LPD D  + ++          +   + A+   R  R    
Sbjct: 347 --PALRRPGRLD--RHIKVELPDHDARKDILTLHL---GTEVSPDVLAH-SARATRGYSG 398

Query: 212 AEKLVDKMDNLALSRGMGITRSLAAE 237
           A   + ++   A  +     RS+ A+
Sbjct: 399 A--ALAQLARDARKQARRAGRSITAD 422


>gi|188588854|ref|YP_001922688.1| DNA replication protein DnaC [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499135|gb|ACD52271.1| dnaC family protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 326

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 21/119 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----------------LIDTRK 109
           ++  G  GSGK+ L+   S       +  + K+ D +                 L+    
Sbjct: 186 LLFFGNPGSGKTYLSYCLSKAILDKGYLVVYKTSDELIKNLSEIRFNNNHNLESLLLNCD 245

Query: 110 PVLLEDIDLLDFND---TQLFHIIN-SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
            ++++D+     N+   T+LF+IIN  I      L+ T  T P         + SRL  
Sbjct: 246 LLIIDDLGAEHLNEFSITELFNIINKRILNKKKMLISTNLTLPGITKQYTERIASRLLG 304


>gi|145344306|ref|XP_001416677.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576903|gb|ABO94970.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 444

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105
           P RV+++VGP+GSGKS LA   +        +  A      L 
Sbjct: 8   PPRVIVIVGPTGSGKSRLAVELARALGGDVINADALQFHDSLP 50


>gi|121534286|ref|ZP_01666110.1| AAA family ATPase, CDC48 subfamily [Thermosinus carboxydivorans
           Nor1]
 gi|121307056|gb|EAX47974.1| AAA family ATPase, CDC48 subfamily [Thermosinus carboxydivorans
           Nor1]
          Length = 720

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 79/232 (34%), Gaps = 64/232 (27%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GP G+GK+ +A   + +SR+T        + +      +                 
Sbjct: 219 VLLYGPPGTGKTLMARAVASESRATFLHVNGPEIVNKFYGESEARLRELFETAQRRAPSI 278

Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFP---------- 148
           + +++ID +                 QL  +++ +      +++ A   P          
Sbjct: 279 IFIDEIDAIAPKRSEVIGDVEKRIVAQLLALMDGLKSRGEVIVIGATNVPDMVDPALRRP 338

Query: 149 ----VSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
                   +  PD+  RL         +++    D      + ++      F+   LA  
Sbjct: 339 GRFDRELSINPPDMTGRLAILKIHTRSMRLDSSVD------LERIAQMTHGFVGADLA-- 390

Query: 201 IVQRMERSLVFAEKLVDKMDNLA------LSRGMGITRSLAAEVLKETQQCD 246
           I+ + E  +    +++ ++D  A      +   + +T   A + L+  ++ +
Sbjct: 391 ILCK-EAGMNAIRRILPELDLRAEGLPPEIMEKLRVT---ANDFLQAFREVE 438



 Score = 35.9 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           V+L GP G+GK+ +    +  + +   +  A +L S
Sbjct: 492 VLLTGPPGTGKTLIVRALAGSTGAHLIAVDASTLHS 527


>gi|118464711|ref|YP_882963.1| ATPase [Mycobacterium avium 104]
 gi|118165998|gb|ABK66895.1| ATPase [Mycobacterium avium 104]
          Length = 332

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 31/155 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD---------------SILIDT 107
            +  ++L GP G+GK+  A + + +     FS    ++                  LIDT
Sbjct: 121 AAGRLLLTGPPGTGKTSTARVIAGELGLPLFSVRLDTIITKYMGETAAKLRLIFDALIDT 180

Query: 108 RKPVLLEDIDLLDFNDTQ---------LFHIINSIHQYDS--SLLMTARTFPVSWGVCLP 156
           R   L +++D L  +            + +      + DS  S+++ A   P        
Sbjct: 181 RGVYLFDEVDALAGDRAAPNDVGEIRRVLNSFLQFLEEDSSDSIIIAATNHPKLLDNA-- 238

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191
            L  R        +  PDD   E VI    A  QI
Sbjct: 239 -LYRRFDTVMDFAL--PDDAATEAVIRNRLARFQI 270


>gi|72389132|ref|XP_844861.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62358652|gb|AAX79110.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801395|gb|AAZ11302.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 887

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 56/200 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------------LDSILID 106
           P R ++L GP G+GK+ +A   +++++ T F+  A S                    ++ 
Sbjct: 600 PPRGLLLFGPPGTGKTMIARAIANRAQCTFFNISASSVMSKWMGDGEKLVRCLFAVAVVK 659

Query: 107 TRKPVLLEDID---------------------LLDFNDTQLFHIINSIHQYDSSLLMTAR 145
               + +++ID                     L+  +           +Q D  LL+ A 
Sbjct: 660 QPSVIFIDEIDSLLSMRSEGEMDAVRRVKTEFLVQLDGVA-------TNQGDRVLLIGAT 712

Query: 146 TFPVSW-GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
             P          L  RL       I LPD +   ++I  +         + +       
Sbjct: 713 NRPDELDEAARRRLEKRL------YIPLPDINARAQLIKMLLEQTGTNCGQAVGQ----- 761

Query: 205 MERSLVFAEKLVDKMDNLAL 224
              S   A   V  MD  ++
Sbjct: 762 SAESAGKAASSVSDMDEKSI 781


>gi|16759429|ref|NP_455046.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29142799|ref|NP_806141.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213160793|ref|ZP_03346503.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425857|ref|ZP_03358607.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213646004|ref|ZP_03376057.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289827299|ref|ZP_06545982.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|21263470|sp|Q8Z8V1|CLPX_SALTI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|25296072|pir||AD0558 ATP-dependent clp protease ATP-binding chain ClpX [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501720|emb|CAD08908.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138431|gb|AAO70001.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 423

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRTHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLTGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|17298145|dbj|BAB78494.1| 26S proteasome regulatory particle triple-A ATPase subunit3 [Oryza
           sativa Japonica Group]
          Length = 368

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   +  + +     +        +    P ++ D+  L 
Sbjct: 148 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL-GEGPRMVRDVFRLA 204


>gi|87311373|ref|ZP_01093494.1| putative ABC transport system ATP binding protein [Blastopirellula
           marina DSM 3645]
 gi|87285953|gb|EAQ77866.1| putative ABC transport system ATP binding protein [Blastopirellula
           marina DSM 3645]
          Length = 261

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 17/140 (12%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
              ++G SGSGKS L ++ +  +        +     +++D +    L D DL  F   +
Sbjct: 41  FTAIMGASGSGKSTLMHLMAGLT--------SPDAGQVIVDGQNISKLSDGDLTRFRRQK 92

Query: 126 ---LFHIINSI----HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178
              +F   N I     + + +L + A  +       L DL  RL  A   K     D   
Sbjct: 93  IGLVFQAFNLIPTLTAEDNITLPLFASGYSGEIREKLDDLLDRLGIAERRKHRP--DALS 150

Query: 179 EKVIVKMFADRQIFIDKKLA 198
                ++   R +  D  + 
Sbjct: 151 GGEQQRVAIARALITDPSIV 170


>gi|329948202|ref|ZP_08295074.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328522935|gb|EGF50040.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 692

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    FS  A     + +      + +  D    N   +
Sbjct: 241 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEMFVGVGASRVRDLFDQAKENAPAI 300


>gi|326475753|gb|EGD99762.1| ATPase family AAA domain-containing protein [Trichophyton tonsurans
           CBS 112818]
          Length = 415

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 146 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 176


>gi|325968813|ref|YP_004245005.1| ABC transporter [Vulcanisaeta moutnovskia 768-28]
 gi|323708016|gb|ADY01503.1| ABC transporter related protein [Vulcanisaeta moutnovskia 768-28]
          Length = 289

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 36/115 (31%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           + I++GPSGSGK+ L NI                + ++   T   V+++ +D+ D ++  
Sbjct: 40  IAIVMGPSGSGKTTLVNI----------------MSTLDKPTSGRVVIDGVDVTDADENY 83

Query: 126 L-----------FHIINSIHQYDS------SLLMTARTF---PVSWGVCLPDLCS 160
           L           F   N + Q  +       +L+T R            L DL S
Sbjct: 84  LSKFRLEKLGFVFQQYNLVSQLTALENVMLPMLLTGRYTKDEAREKARLLLDLVS 138


>gi|321476874|gb|EFX87834.1| hypothetical protein DAPPUDRAFT_306359 [Daphnia pulex]
          Length = 434

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 268

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 329 DPALMRPGRLDRKVEFGLPDLEGR 352


>gi|319951323|ref|ZP_08025155.1| transposase [Dietzia cinnamea P4]
 gi|319435012|gb|EFV90300.1| transposase [Dietzia cinnamea P4]
          Length = 783

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 22/118 (18%)

Query: 61  SWPSRV--VILVGPSGSGKSCLANIWSD------------------KSRSTRFSNIAKSL 100
            W  R   + + GPSG+GK+      +                   ++ +    + +   
Sbjct: 626 EWVHRAENLAISGPSGTGKTHFVEALAHNVIDAGMRVSWFTLESLTEALARANVDGSAGK 685

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ--YDSSLLMTARTFPVSWGVCLP 156
               I   + ++++DI +L             +       SL +T+   P  +   +P
Sbjct: 686 VIARITRAELIVVDDIGMLPAGQAAAEAFYRLVDATYERRSLAVTSNLHPAGFDTFMP 743


>gi|307322637|ref|ZP_07601972.1| IstB domain protein ATP-binding protein [Sinorhizobium meliloti
           AK83]
 gi|306891718|gb|EFN22569.1| IstB domain protein ATP-binding protein [Sinorhizobium meliloti
           AK83]
          Length = 293

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 38/170 (22%)

Query: 30  FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89
           F F     + RD +   + +      ID   +     V  +GP G+GKS LA     ++ 
Sbjct: 83  FDFSFQPSLDRDRIFTLTQLG----FIDRCEA-----VHFLGPPGTGKSHLATALGVEAV 133

Query: 90  STRFSNIAKSLDSILIDTRKP-----------------VLLED----IDLLDFNDTQLFH 128
               S    +L  ++    +                  +L+ D    + ++       F 
Sbjct: 134 KAGKSVYFCTLADLITALSRAEREGRLQERIRFFCRPSLLIVDEIGYLPVIAGGGNLFFQ 193

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD------LCSRLK-AATVVKIS 171
           ++N+ ++  + +L T+      WG    D      L  RL   A VV+I 
Sbjct: 194 LVNARYERGAMIL-TSNRGFAEWGDVFGDPVVATALLDRLLHHAVVVQIE 242


>gi|295096775|emb|CBK85865.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|296101560|ref|YP_003611706.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056019|gb|ADF60757.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|288800395|ref|ZP_06405853.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332608|gb|EFC71088.1| holliday junction DNA helicase RuvB [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 345

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 71/204 (34%), Gaps = 33/204 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P    +L GP G GK+ L+NI +++            LD           LE  D+L  +
Sbjct: 54  PLDHTLLHGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFID 113

Query: 123 DTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDL----------CS----- 160
           +    H ++++ +        D  + +     P +  + + DL           S     
Sbjct: 114 EI---HRLSAVVEEYLYSAMEDYRIDIMIDKGPSARSIQI-DLNPFTLVGATTRSGLLTA 169

Query: 161 --RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERSLVFAEKL 215
             R +    + +   D+D + ++I +  +  ++ ID   AA I  R     R      + 
Sbjct: 170 PLRARFGINLHLEYYDNDTIARIIKRSASIIRVPIDDDAAAEIAGRSRGTPRIANALLRR 229

Query: 216 VDKMDNLALSRGMGITRSLAAEVL 239
           V   D   +     I   +A   L
Sbjct: 230 VR--DFAQVKGSGRINIDIAQYAL 251


>gi|323529415|ref|YP_004231567.1| AAA ATPase [Burkholderia sp. CCGE1001]
 gi|323386417|gb|ADX58507.1| AAA ATPase [Burkholderia sp. CCGE1001]
          Length = 462

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 52  AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           AV  +++      R V+L GP+GSGK+ LA       R       A  +   +I    P+
Sbjct: 170 AVAALNA-----GRPVMLYGPAGSGKTYLAERLGMLLRGAVPVPYALYVAGDVIQLHDPL 224

Query: 112 LLEDIDLLDFN 122
           + +D       
Sbjct: 225 IHKDAAPGALP 235


>gi|271967375|ref|YP_003341571.1| recombination factor protein RarA [Streptosporangium roseum DSM
           43021]
 gi|270510550|gb|ACZ88828.1| recombination factor protein RarA [Streptosporangium roseum DSM
           43021]
          Length = 436

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 49/205 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL---LDFND 123
           + L GP G+GK+ LA + +  ++       A S     +       +E       +    
Sbjct: 56  LFLWGPPGTGKTTLAYVVAGVTKRRFVEVSAVSAGVKEVRA----AIEQARRELGMSGRQ 111

Query: 124 TQLF----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP------ 173
           T LF    H  N   Q                   LP + +R           P      
Sbjct: 112 TVLFVDEVHRFNKAQQDA----------------LLPAVENRWVTFIGATTENPFFSVIS 155

Query: 174 --------------DDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVD 217
                          +D +  V+ +  AD R +    KLA    + + R +   A + + 
Sbjct: 156 PLLSRSLLLTLESLSEDDIRMVLERAVADPRGLDGKAKLAPEAAEHLVRLAGGDARRSLT 215

Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242
            ++  +L     IT  +    + + 
Sbjct: 216 YLEAASLIADGEITVEVVERAVDKA 240


>gi|302870211|ref|YP_003838848.1| adenosinetriphosphatase [Micromonospora aurantiaca ATCC 27029]
 gi|302573070|gb|ADL49272.1| Adenosinetriphosphatase [Micromonospora aurantiaca ATCC 27029]
          Length = 746

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GP G GK+ L    +   R+   S     L S  +   +  + E        
Sbjct: 518 PPRGVLLYGPPGCGKTYLVTALAGSGRANVLSVKGAELLSKWVGESERAVRE-------- 569

Query: 123 DTQLFHIINSIHQYDSSLLM 142
                 +     Q   +L+ 
Sbjct: 570 ------LFRRARQAAPTLVF 583


>gi|240142553|ref|YP_002967066.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           AM1]
 gi|240012500|gb|ACS43725.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens
           AM1]
          Length = 610

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   + ++  T FS        + +      + +
Sbjct: 192 ILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMFVGVGAARVRD 239


>gi|297566669|ref|YP_003685641.1| putative adenylate/guanylate cyclase [Meiothermus silvanus DSM
           9946]
 gi|296851118|gb|ADH64133.1| putative adenylate/guanylate cyclase [Meiothermus silvanus DSM
           9946]
          Length = 703

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
             +++      + + LVGP GSGK+ LA  +  +  +     +A   
Sbjct: 252 EALEAARRGLGQHLALVGPLGSGKTHLARHFLGQLPAGVRGVLAPRF 298


>gi|261341039|ref|ZP_05968897.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316904|gb|EFC55842.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cancerogenus ATCC 35316]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|218549894|ref|YP_002383685.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia
           fergusonii ATCC 35469]
 gi|226706591|sp|B7LME1|CLPX_ESCF3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|218357435|emb|CAQ90074.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia fergusonii ATCC 35469]
 gi|324114665|gb|EGC08633.1| ATP-dependent Clp protease [Escherichia fergusonii B253]
 gi|325498271|gb|EGC96130.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia
           fergusonii ECD227]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|171915256|ref|ZP_02930726.1| cell division cycle protein 48-related protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 479

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 36/158 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106
               ++L GP G GK+ +    + +     F+                N+ +  ++   +
Sbjct: 228 SGGGILLYGPPGCGKTTILRATAGEVSCNYFAIGLHEVFDPYYGSIERNLHQIFETARAN 287

Query: 107 TRKPVLLEDIDLLDFN-----DTQLFHIINSIH--------QYDSSLLMTARTFPVSWGV 153
           T   ++ +++D L  +     DTQ+ +++N                L++ A   P  W +
Sbjct: 288 TPCVLVFDELDSLAPDRRHVRDTQMRNVVNQFLSELDGLRSDNQRILVIGATNSP--WQL 345

Query: 154 CLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADR 189
             P L    R   A  V    PDD    ++I  +  D+
Sbjct: 346 D-PALRRPGRFDQAIFV--PPPDDAARHQIIRLLAKDK 380


>gi|154346282|ref|XP_001569078.1| proteasome regulatory ATPase subunit [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066420|emb|CAM44212.1| proteasome regulatory ATPase subunit [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 409

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 189 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGAELVQKYIGEGARMVRE 236


>gi|145535542|ref|XP_001453504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421226|emb|CAK86107.1| unnamed protein product [Paramecium tetraurelia]
          Length = 453

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 15/142 (10%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI-DTRKPV 111
            +L ++ P+   R++++ GP GSG+S LA     +      S      + +    T    
Sbjct: 236 YKLYNNAPTRAGRILVI-GPPGSGRSTLAKHLCARYGFVYISTRELISNLVNQKGTTGKE 294

Query: 112 LLEDIDLLDFNDTQLFHIIN-----SIHQYDSSL---LMTARTFPVSWGVCLPDLCSRLK 163
             E I+  D  D +   IIN      I+Q D  L   ++            L +L   ++
Sbjct: 295 AFEKINKGDLVDDR---IINALIKERINQTDCQLQGYVLDGYPKTQQQLETLNELN--IQ 349

Query: 164 AATVVKISLPDDDFLEKVIVKM 185
              +V I   DD  L ++  + 
Sbjct: 350 PTLIVIIDATDDIVLRRLTQRR 371


>gi|110433417|gb|ABG74390.1| DnaA [Rickettsia montanensis]
          Length = 199

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 44/133 (33%)

Query: 35  CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
            +  + D+ +V +  E              AV          S  + L G  G GK+ L 
Sbjct: 71  DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 122

Query: 82  NI--WSDKSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDF 121
           +   W  K  +     I  S +  +    K                   ++++DI  +  
Sbjct: 123 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 182

Query: 122 ND---TQLFHIIN 131
            D      FH  N
Sbjct: 183 KDSTQEGFFHTFN 195


>gi|90409964|ref|ZP_01217981.1| hypothetical Glycerol metabolism operon regulatory protein
           [Photobacterium profundum 3TCK]
 gi|90329317|gb|EAS45574.1| hypothetical Glycerol metabolism operon regulatory protein
           [Photobacterium profundum 3TCK]
          Length = 651

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 34/132 (25%)

Query: 35  CLGISRDDLLVHSAIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
              ++ DD +V  +      VR           V+ L G  G GKS LA    + S    
Sbjct: 337 RARLTFDD-IVGGSDAMLRVVRQARHAAKGRGPVL-LHGEDGIGKSHLAQAIHNGSDRHG 394

Query: 93  FSNIAKSLDSIL------------------------IDTRKPVLLEDIDLLDFN-DTQLF 127
              IA +  +I                         +     + L+ ++ L       L 
Sbjct: 395 QPFIAINCQAIPKELMASEFLGSALESEHSSVSKFELANGGTLFLDQVECLSSEVQAALL 454

Query: 128 H-----IINSIH 134
           H     +IN ++
Sbjct: 455 HLLKTGLINRMN 466


>gi|19527961|gb|AAL90095.1| AT18413p [Drosophila melanogaster]
          Length = 479

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           P R ++L GP GSGK+ LA     +++   
Sbjct: 238 PWRSLLLHGPPGSGKTLLAKALYSETQGQV 267


>gi|24380393|ref|NP_722348.1| recombination factor protein RarA [Streptococcus mutans UA159]
 gi|24378415|gb|AAN59654.1|AE015027_12 putative ATPase [Streptococcus mutans UA159]
          Length = 427

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  ++               + +  +         +LL++I 
Sbjct: 48  MILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRLQEIAEEAKFSGGLVLLLDEIH 107

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD                +  ++M   T    +    P + SR     + ++    ++ 
Sbjct: 108 RLDKTKQDFL----LPLLENGQIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 160

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           ++K +     D  R     + +D     +I Q     L  A   +D
Sbjct: 161 IKKAMQAALTDTERGFDFEVKLDDDALDFIAQATNGDLRSAYNSLD 206


>gi|28209972|ref|NP_780916.1| cell division protein ftsH [Clostridium tetani E88]
 gi|28202407|gb|AAO34853.1| cell division protein ftsH [Clostridium tetani E88]
          Length = 603

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 197 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKN 252


>gi|10178061|dbj|BAB11425.1| unnamed protein product [Arabidopsis thaliana]
          Length = 871

 Score = 38.2 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 35  CLGISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVI------LVGPSGSGKSCLANIW 84
             G++ DD      +   +++ VR++ +   + ++ +       L GP G+GK+ LA   
Sbjct: 310 KTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAI 369

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           + ++    F+        + +      + +
Sbjct: 370 AGEAGLPFFAANGTDFVEMFVGVAASRVKD 399


>gi|328542273|ref|YP_004302382.1| ATP-dependent metalloprotease FtsH [polymorphum gilvum SL003B-26A1]
 gi|326412022|gb|ADZ69085.1| ATP-dependent metalloprotease FtsH [Polymorphum gilvum SL003B-26A1]
          Length = 610

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   + ++  T FS        + +      + +
Sbjct: 192 ILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMFVGVGAARVRD 239


>gi|307565626|ref|ZP_07628104.1| recombination factor protein RarA [Prevotella amnii CRIS 21A-A]
 gi|307345658|gb|EFN91017.1| recombination factor protein RarA [Prevotella amnii CRIS 21A-A]
          Length = 422

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 20/110 (18%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI-----------LIDTRKPVL- 112
            IL GP G GK+ LA I ++  ++     S +   +  +              T  P++ 
Sbjct: 41  FILWGPPGVGKTTLAQIIANMLETPFYSVSAVTSGVKEVREVIERAKGNRFFSTNSPIIF 100

Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161
           +++I          L        +     L+ A T   S+ V  P L SR
Sbjct: 101 IDEIHRFSRAQQDSLL----DAVEKGIVTLIGATTENPSFEVITP-LLSR 145


>gi|302677713|ref|XP_003028539.1| hypothetical protein SCHCODRAFT_85835 [Schizophyllum commune H4-8]
 gi|300102228|gb|EFI93636.1| hypothetical protein SCHCODRAFT_85835 [Schizophyllum commune H4-8]
          Length = 401

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 180 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 227


>gi|222618018|gb|EEE54150.1| hypothetical protein OsJ_00955 [Oryza sativa Japonica Group]
          Length = 883

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   +++++++  +
Sbjct: 608 PCRGILLFGPPGTGKTMLAKAIANEAQASFIN 639


>gi|206900267|ref|YP_002251238.1| putative Mg chelatase [Dictyoglomus thermophilum H-6-12]
 gi|206739370|gb|ACI18428.1| putative Mg chelatase [Dictyoglomus thermophilum H-6-12]
          Length = 506

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 28  LFFSFP-RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84
           L ++FP      S +D         A R ++   +    V+ LVGP G+GK+ LA  +
Sbjct: 175 LKYNFPNYKPTFS-EDFSFIKGQAYAKRALEISAAGGHNVL-LVGPPGTGKTLLARTF 230


>gi|254432006|ref|ZP_05045709.1| cell division protein FtsH2 [Cyanobium sp. PCC 7001]
 gi|197626459|gb|EDY39018.1| cell division protein FtsH2 [Cyanobium sp. PCC 7001]
          Length = 649

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 71/210 (33%), Gaps = 43/210 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GP G+GK+ LA   + ++    FS  A     + +                     
Sbjct: 211 VLLIGPPGTGKTLLARAIAGEAGVPFFSMAASEFVEMFVGVGASRVRDLFRKAKAKAPCI 270

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++   +    +L+ A   P      L
Sbjct: 271 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEENSGVILVAATNRPDVLDRAL 330

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       + + LPD    E+++      R +     LA +  +R       A
Sbjct: 331 ------MRPGRFDRRITVDLPDRRGREEILAVHARTRPLAEGVSLADW-ARRTP-GFSGA 382

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             L + ++  A+        ++  E L + 
Sbjct: 383 -DLSNLLNEAAILTARRHRTAIDGEALGDA 411


>gi|160933739|ref|ZP_02081127.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753]
 gi|156867616|gb|EDO60988.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753]
          Length = 660

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 215 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKN 270


>gi|152981567|ref|YP_001354483.1| transposase [Janthinobacterium sp. Marseille]
 gi|151281644|gb|ABR90054.1| transposase [Janthinobacterium sp. Marseille]
          Length = 265

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 24/144 (16%)

Query: 32  FPRCLGISRDDLLVHSAIE-QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------ 84
           FP    ++  D  V          L ++  +  +  V+LVG  G+GK+ LA         
Sbjct: 64  FPVHRDLAGFDFAVSPVDSKLVHTLAETGFTEVAHNVVLVGGPGTGKTHLATAIGVSGIT 123

Query: 85  --SDKSRSTRFSNIAKSLD-----------SILIDTRKPVLLEDIDLLDFNDTQ---LFH 128
               + R     ++  +L+           +  +     V+L+++  L F+      LFH
Sbjct: 124 KHGRRVRFYSTVDLVNALEQEKAQGKAGRIATSLLRLDLVILDELGYLPFSQAGGALLFH 183

Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152
           +++ ++++ +S+++T       W 
Sbjct: 184 LLSRLYEH-TSVMITTNLDFAEWS 206


>gi|148265280|ref|YP_001231986.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4]
 gi|146398780|gb|ABQ27413.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4]
          Length = 617

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 211 ILLVGPPGTGKTLLARAVAGEAGVAFFSISASQFIEMFVGVGASRVRD 258


>gi|119501455|ref|XP_001267484.1| mitochondrial chaperone bcs1 [Neosartorya fischeri NRRL 181]
 gi|119415650|gb|EAW25587.1| mitochondrial chaperone bcs1 [Neosartorya fischeri NRRL 181]
          Length = 519

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 47/143 (32%), Gaps = 39/143 (27%)

Query: 63  PSRVVIL-VGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVL 112
           P R   L  GP G+GKS LA   +             S + +  A +   + +  R  VL
Sbjct: 254 PYRRGYLFYGPPGTGKSSLAFAAAGFLGLNVYMLNLNSQQLTEDALTQLFLTLPRRCLVL 313

Query: 113 LEDID--------------LLDFNDTQLFHIINS----IHQYDSSLLMT---------AR 145
           LEDID                  N   L  ++N       Q    L+MT         A 
Sbjct: 314 LEDIDANEVTGRRKPGARRRKGKNGISLSSLLNIIDGVAAQEGRVLIMTTNHHEHLDPAL 373

Query: 146 TFPVSWGVCLP-DLCSR-LKAAT 166
             P      L   L SR L AA 
Sbjct: 374 IRPGRVDYKLEFQLASRDLSAAM 396


>gi|121714277|ref|XP_001274749.1| proteasome regulatory particle subunit Rpt6, putative [Aspergillus
           clavatus NRRL 1]
 gi|119402903|gb|EAW13323.1| proteasome regulatory particle subunit Rpt6, putative [Aspergillus
           clavatus NRRL 1]
          Length = 389

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 169 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 216


>gi|115388861|ref|XP_001211936.1| 26S protease regulatory subunit 8 [Aspergillus terreus NIH2624]
 gi|114196020|gb|EAU37720.1| 26S protease regulatory subunit 8 [Aspergillus terreus NIH2624]
          Length = 389

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 169 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 216


>gi|270208608|ref|YP_003329379.1| probable IS21 family transposase [Sinorhizobium meliloti]
 gi|76880882|gb|ABA56052.1| probable IS21 family transposase [Sinorhizobium meliloti]
          Length = 254

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 33/181 (18%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE--QAVRLID-SWPSWPSRVVILV 70
           D++K D+     +     FP    +   D      +   Q + L    W      V+ L 
Sbjct: 58  DRRKVDRRIKAAK-----FPVVKSLDSFDFAAIPKLNKMQVLELARCEWIERRENVIAL- 111

Query: 71  GPSGSGKSC----LANIWSDK-------SRSTRFSNIAKSLDSILI-------DTRKPVL 112
           GPSG+GK+     L      K       + +   S + ++ D   +          K ++
Sbjct: 112 GPSGTGKTHVALGLGLAACQKGLSVGFTTAAALVSEMMEARDERRLLRFQKQMAAYKLLI 171

Query: 113 LEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
           ++++  +  +      LF +I+  ++  ++ L+T+      W   L     RL  A + +
Sbjct: 172 IDELGFVPLSKTGAELLFELISQRYERGAT-LITSNLPFDEWTETLG--SERLTGALLDR 228

Query: 170 I 170
           I
Sbjct: 229 I 229


>gi|66476547|ref|YP_238482.1| ORF1 [Human parvovirus 4]
 gi|52854179|gb|AAU88153.1| ORF1 [Human parvovirus 4]
          Length = 663

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 58  SWPS--WPSRVVI-LVGPSGSGKSCLANIWSDKS 88
           +W    WP R  I L GP+ +GK+ LA   ++ S
Sbjct: 318 AWARGVWPKRRAIWLWGPASTGKTLLAAAIANLS 351


>gi|57525333|ref|NP_001006225.1| 26S protease regulatory subunit 7 [Gallus gallus]
 gi|327273622|ref|XP_003221579.1| PREDICTED: 26S protease regulatory subunit 7-like [Anolis
           carolinensis]
 gi|53127484|emb|CAG31125.1| hypothetical protein RCJMB04_2j13 [Gallus gallus]
 gi|197129090|gb|ACH45588.1| putative 26S protease regulatory subunit 7 [Taeniopygia guttata]
          Length = 433

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 368

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 369 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403


>gi|82543378|ref|YP_407325.1| recombination factor protein RarA [Shigella boydii Sb227]
 gi|81244789|gb|ABB65497.1| putative polynucleotide enzyme [Shigella boydii Sb227]
 gi|320183169|gb|EFW58027.1| recombination factor protein RarA [Shigella flexneri CDC 796-83]
 gi|332097125|gb|EGJ02108.1| ATPase family associated with various cellular activities family
           protein [Shigella boydii 3594-74]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|15842492|ref|NP_337529.1| IS1533 transposase protein B [Mycobacterium tuberculosis CDC1551]
 gi|254365581|ref|ZP_04981626.1| transposase for insertion sequence element IS1533 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|13882799|gb|AAK47343.1| IS1533, OrfB [Mycobacterium tuberculosis CDC1551]
 gi|134151094|gb|EBA43139.1| transposase for insertion sequence element IS1533 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|323718416|gb|EGB27589.1| transposase [Mycobacterium tuberculosis CDC1551A]
          Length = 238

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 29/131 (22%)

Query: 47  SAIEQAVRLIDSWPSW----PSRVVILVGPSGSGKSCLA---NIWSDKSRSTRFSNIAKS 99
           ++      +   W  W    P+       P G+GK+ LA    I + ++        A  
Sbjct: 63  ASNATPSHI---WAPWISSPPAITSCFWAPPGTGKTHLAVGLAIRACQAGHRVLFATAAE 119

Query: 100 LDSILIDTRKP---------------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLL 141
             + L +                   ++++++  + F        F ++ S     +SL+
Sbjct: 120 WVARLAEAHHAGRIYAELTRLCRYPLLVVDEVGYIPFEPEAANLFFQLV-SSRYERASLI 178

Query: 142 MTARTFPVSWG 152
           +T+      WG
Sbjct: 179 VTSNKAFGRWG 189


>gi|83775855|dbj|BAE65974.1| unnamed protein product [Aspergillus oryzae]
          Length = 757

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 41/209 (19%)

Query: 68  ILVGPSGSGKSCLANIWSD--------KSRSTRFSNIAK-----SLDSILIDTRKPVLLE 114
           +  GP G+GK+  A +++          S       ++        D IL  T    L+ 
Sbjct: 400 VFAGPPGTGKTTAAKLYAQILADLGLLSSGEVTVKPLSAFNNVSDTDDILSSTVGKALII 459

Query: 115 DIDLLDFNDTQLFHIINSIH-----------QYDSSLLMTARTFPVSWGVCLPDLC--SR 161
           D++  + +D   F + +S+            +   ++L+ +     +    LP+L   SR
Sbjct: 460 DMNTPETDDND-FQVSDSVLDMLIKELSANGENRCTILVGSDHAVDTL---LPELKEASR 515

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV-----QRMERSLVFAEKLV 216
           +    VV+      + +E++      ++ +    +     +      RM +    A  + 
Sbjct: 516 MLEHQVVRFQPLTREQMEELFQAKLQEQDVDATPEAFQAAMDILESARMRKDFDNARGI- 574

Query: 217 DKMDNLA-----LSRGMGITRSLAAEVLK 240
           +++   A       R       L+  VL+
Sbjct: 575 ERLLTAANRNFDQRRSRAPDGPLSQRVLE 603


>gi|169784139|ref|XP_001826531.1| 26S protease subunit rpt4 [Aspergillus oryzae RIB40]
 gi|238508808|ref|XP_002385587.1| proteasome regulatory particle subunit Rpt6, putative [Aspergillus
           flavus NRRL3357]
 gi|83775276|dbj|BAE65398.1| unnamed protein product [Aspergillus oryzae]
 gi|220688479|gb|EED44832.1| proteasome regulatory particle subunit Rpt6, putative [Aspergillus
           flavus NRRL3357]
          Length = 389

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 169 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 216


>gi|67541649|ref|XP_664592.1| hypothetical protein AN6988.2 [Aspergillus nidulans FGSC A4]
 gi|40742444|gb|EAA61634.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
 gi|259483704|tpe|CBF79312.1| TPA: hypothetical protein similar to proteasome p45/SUG (Broad)
           [Aspergillus nidulans FGSC A4]
          Length = 389

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 169 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 216


>gi|330040501|ref|XP_003239936.1| 26S proteasome AAA-ATPase subunit [Cryptomonas paramecium]
 gi|327206862|gb|AEA39038.1| 26S proteasome AAA-ATPase subunit [Cryptomonas paramecium]
          Length = 407

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + +IL G  G+GK+ LA   ++ +++         L    +     ++ E
Sbjct: 185 PPKGIILYGEPGTGKTLLAKAVANSTKACFIKISGSELVQKFLGEGPRLVRE 236


>gi|327193462|gb|EGE60358.1| cell division metalloproteinase protein [Rhizobium etli CNPAF512]
          Length = 643

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+LVGP G+GK+ LA   + ++    F+        + +                   
Sbjct: 192 RGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 251

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +  +            +  L  +   ++     +  +L+ A   P     
Sbjct: 252 CIIFIDEIDAVGLHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDP 311

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    E+++      R + +   +   ++ R      
Sbjct: 312 AL------LRPGRFDRQVVVPNPDIVGRERILKVHA--RNVPLAPNVDLKVLARGTPGFS 363

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L++ ++  AL     
Sbjct: 364 GA-DLMNLVNEAALMAARR 381


>gi|309812728|ref|ZP_07706468.1| IstB-like ATP-binding protein [Dermacoccus sp. Ellin185]
 gi|308433308|gb|EFP57200.1| IstB-like ATP-binding protein [Dermacoccus sp. Ellin185]
          Length = 272

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 30/164 (18%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR--VVILVGPSGSGKSCLA----NIWS 85
           FPR   I   D   + AIE A     +   W  +   + L+G SG+GK+ L        +
Sbjct: 87  FPRSKWIGDFDFTANPAIEAATIHQLAKGDWIRKGEPLCLIGDSGTGKTHLLIGLGTAAA 146

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLE------DIDLLDFND-----------TQLFH 128
           ++    R++   + ++ ++      +L +       +DLL  ++             LF 
Sbjct: 147 EQGHRVRYTLATRLVNELVEAADDKILAKTIARYGRVDLLIIDELGYMELDRRGAELLFQ 206

Query: 129 IINSIHQYDSSLLMTARTFPVSW--GVCLPDLCSRLKAATVVKI 170
           ++ +  +  +S+ +T+      W      P    RL AA V ++
Sbjct: 207 VL-TEREEKNSIAITSNQSFSGWTDTFTDP----RLCAAIVDRL 245


>gi|306790883|ref|ZP_07429205.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu004]
 gi|306795990|ref|ZP_07434292.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu006]
 gi|306801237|ref|ZP_07437905.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu008]
 gi|306805451|ref|ZP_07442119.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu007]
 gi|306969742|ref|ZP_07482403.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu009]
 gi|308369172|ref|ZP_07416832.2| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu002]
 gi|308371396|ref|ZP_07424839.2| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu003]
 gi|308372684|ref|ZP_07429508.2| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu005]
 gi|308328489|gb|EFP17340.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu002]
 gi|308328904|gb|EFP17755.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu003]
 gi|308332742|gb|EFP21593.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu004]
 gi|308340235|gb|EFP29086.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu005]
 gi|308343556|gb|EFP32407.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu006]
 gi|308348024|gb|EFP36875.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu007]
 gi|308351965|gb|EFP40816.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu008]
 gi|308352751|gb|EFP41602.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis SUMu009]
          Length = 760

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 19/81 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K++ +QL    P+         D          D L + +  QA+         P  V+ 
Sbjct: 147 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 200

Query: 69  LVGPSGSGKSCLANIWSDKSR 89
           L GP G+GK+ LA   + ++ 
Sbjct: 201 LYGPPGTGKTLLARAVAGEAG 221


>gi|262042474|ref|ZP_06015633.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040178|gb|EEW41290.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|242051511|ref|XP_002454901.1| hypothetical protein SORBIDRAFT_03g001130 [Sorghum bicolor]
 gi|241926876|gb|EES00021.1| hypothetical protein SORBIDRAFT_03g001130 [Sorghum bicolor]
          Length = 847

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   +++++++  +
Sbjct: 571 PCRGILLFGPPGTGKTMLAKAIANEAQASFIN 602


>gi|296139466|ref|YP_003646709.1| ATPase AAA [Tsukamurella paurometabola DSM 20162]
 gi|296027600|gb|ADG78370.1| AAA ATPase central domain protein [Tsukamurella paurometabola DSM
           20162]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 41/192 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTRKPVL 112
           ++L GP G GK+ LA   + +  +   S     +                     + P +
Sbjct: 179 MLLYGPPGCGKTFLARAVAGELGAGFLSVTISDILDQWLGNSEKNLHEIFATARAQAPCV 238

Query: 113 L--EDIDLLDF-----NDTQLFHIIN----------SIHQYDSSLLMTARTFPVSWGVCL 155
           +  +++D +         T +  +IN          S    +   ++ A   P  W V L
Sbjct: 239 IMFDELDAIGGKRSRHQSTTMRTVINQLLIELDGVDSATANEGVFVLAATNTP--WDVDL 296

Query: 156 PDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFA 212
             L    RL    +V    PD      +I     +R   I++     +V+R E  S    
Sbjct: 297 A-LRRPGRLDRMVLVT--PPDAPARAAIIDYHLRER--PIERVDIGALVRRTEGYSGADI 351

Query: 213 EKLVDKMDNLAL 224
             + +    +AL
Sbjct: 352 AHVCESASEMAL 363


>gi|238567752|ref|XP_002386306.1| hypothetical protein MPER_15500 [Moniliophthora perniciosa FA553]
 gi|215437859|gb|EEB87236.1| hypothetical protein MPER_15500 [Moniliophthora perniciosa FA553]
          Length = 98

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 70 VGPSGSGKSCLANIWSDKSRSTRFS 94
           GP G GK+ LA   ++ S +   S
Sbjct: 39 WGPPGCGKTLLAKAVANASGANFIS 63


>gi|170287982|ref|YP_001738220.1| phosphoribulokinase/uridine kinase [Thermotoga sp. RQ2]
 gi|170175485|gb|ACB08537.1| phosphoribulokinase/uridine kinase [Thermotoga sp. RQ2]
          Length = 555

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 10/85 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----DIDLLD 120
           R++++ GPS SGK+  A   S + R      +A SLD   +D  K    E    D D ++
Sbjct: 291 RLILIAGPSSSGKTTFAKRLSLQLRVNGLKPVAISLDDYFVDREKTPRDENGNYDFDSIE 350

Query: 121 FNDTQLFHIINSIHQ---YDSSLLM 142
             D +LF   N   Q       +++
Sbjct: 351 ALDIELF---NRNLQDLLAGKEVVL 372


>gi|113866929|ref|YP_725418.1| ABC transporter ATPase/permease [Ralstonia eutropha H16]
 gi|113525705|emb|CAJ92050.1| ABC-type transporter, ATPase and permease components: LipidE family
           [Ralstonia eutropha H16]
          Length = 580

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 46  HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDS 102
             A   A+  ID   S P  VV LVGPSGSGK+ L N+   + D +      +     + 
Sbjct: 345 GEASRAALEGIDLRVS-PGEVVALVGPSGSGKTTLVNLVPRFFDPTGGRILLDGTPLTEL 403

Query: 103 ILIDTRKPVLLEDIDLLDFNDT 124
            L D R  +     D++ FNDT
Sbjct: 404 SLKDLRNQIAFVSQDVVLFNDT 425


>gi|115465705|ref|NP_001056452.1| Os05g0584600 [Oryza sativa Japonica Group]
 gi|48843801|gb|AAT47060.1| unknown protein [Oryza sativa Japonica Group]
 gi|113580003|dbj|BAF18366.1| Os05g0584600 [Oryza sativa Japonica Group]
          Length = 855

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++ + ++  +
Sbjct: 534 PCRGILLFGPPGTGKTMLAKAIANDAGASFIN 565


>gi|18422193|ref|NP_568604.1| VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/
           metallopeptidase [Arabidopsis thaliana]
 gi|17865467|sp|Q9FH02|FTSH5_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 5,
           chloroplastic; Short=AtFTSH5; AltName: Full=Protein
           VARIEGATED 1; Flags: Precursor
 gi|10177012|dbj|BAB10200.1| cell division protein FtsH [Arabidopsis thaliana]
 gi|22022513|gb|AAM83215.1| AT5g42270/K5J14_7 [Arabidopsis thaliana]
 gi|332007407|gb|AED94790.1| cell division protease ftsH-5 [Arabidopsis thaliana]
          Length = 704

 Score = 38.2 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 287 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 333


>gi|326482686|gb|EGE06696.1| ATPase family AAA domain-containing protein 1-B [Trichophyton
           equinum CBS 127.97]
          Length = 415

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 146 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 176


>gi|326469647|gb|EGD93656.1| hypothetical protein TESG_01197 [Trichophyton tonsurans CBS 112818]
          Length = 997

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 725 PGLLLYGPPGTGKTMLAKAVARESGATVLE 754


>gi|321399187|emb|CAM66549.2| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 945

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L G  GSGK+ LA   +++S +  F+
Sbjct: 684 LLLYGAPGSGKTLLAYAIANESGARFFN 711


>gi|320590456|gb|EFX02899.1| molybdopterin-binding domain containing protein [Grosmannia
           clavigera kw1407]
          Length = 317

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA---YI 201
              P+ W V  P+L +RL+      + LP D  L       F    +++   +     +I
Sbjct: 148 SQPPIDWDVDSPELRARLR-----MVELPTDPALAPDQQFFFTREDLWVPVCVVNGNVHI 202

Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           +  + R        +       L+ G GITR L +  L E+
Sbjct: 203 LPGVPRLFEMLLDGLKPALESRLASGKGITRVLISTPLPES 243


>gi|315225697|ref|ZP_07867504.1| replication-associated recombination protein A [Capnocytophaga
          ochracea F0287]
 gi|314944360|gb|EFS96402.1| replication-associated recombination protein A [Capnocytophaga
          ochracea F0287]
          Length = 426

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
             I  GP G+GK+ LANI + +S    ++  A S
Sbjct: 40 PSFIFWGPPGTGKTTLANIIAHQSNRAFYTLSAIS 74


>gi|315050696|ref|XP_003174722.1| spastin [Arthroderma gypseum CBS 118893]
 gi|311340037|gb|EFQ99239.1| spastin [Arthroderma gypseum CBS 118893]
          Length = 1005

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 733 PGLLLYGPPGTGKTMLAKAVARESGATVLE 762


>gi|307106907|gb|EFN55151.1| hypothetical protein CHLNCDRAFT_134244 [Chlorella variabilis]
          Length = 428

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P   ++L GP G+GKS LA   + ++ ST FS  +  L S  +   + ++
Sbjct: 160 PWSGILLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWLGESEKLV 209


>gi|296812587|ref|XP_002846631.1| spastin [Arthroderma otae CBS 113480]
 gi|238841887|gb|EEQ31549.1| spastin [Arthroderma otae CBS 113480]
          Length = 986

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 714 PGLLLYGPPGTGKTMLAKAVARESGATVLE 743


>gi|229039971|ref|ZP_04189735.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH676]
 gi|228727379|gb|EEL78572.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus AH676]
          Length = 582

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 147 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 206

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 207 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIVAATNRPDILDPAL 266

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 267 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 317

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 318 A-DLENLLNEAALVAAR 333


>gi|228919016|ref|ZP_04082396.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228956507|ref|ZP_04118304.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229107752|ref|ZP_04237389.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-15]
 gi|229125583|ref|ZP_04254616.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|229142872|ref|ZP_04271314.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228640584|gb|EEK96972.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-ST24]
 gi|228657900|gb|EEL13705.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228675725|gb|EEL30932.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus cereus
           Rock1-15]
 gi|228803197|gb|EEM50018.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228840665|gb|EEM85926.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane
           protease FtsH catalytic subunit [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 612

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIVAATNRPDILDPAL 296

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 347

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 348 A-DLENLLNEAALVAAR 363


>gi|255550758|ref|XP_002516427.1| Protein YME1, putative [Ricinus communis]
 gi|223544247|gb|EEF45768.1| Protein YME1, putative [Ricinus communis]
          Length = 716

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 35/151 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110
           V+LVGP G+GK+ LA   + ++    FS      + + +                     
Sbjct: 260 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 319

Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--P 156
           + +++ID +  +              QL   ++   Q +  +++ A  FP S    L  P
Sbjct: 320 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP 379

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187
               R      + +  PD +   +++    +
Sbjct: 380 ---GRFD--RHIVVPNPDVEGRRQIMESHMS 405


>gi|195390811|ref|XP_002054061.1| GJ23001 [Drosophila virilis]
 gi|194152147|gb|EDW67581.1| GJ23001 [Drosophila virilis]
          Length = 408

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 188 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKYIGEGSRMVRE 235


>gi|195113257|ref|XP_002001184.1| GI10644 [Drosophila mojavensis]
 gi|193917778|gb|EDW16645.1| GI10644 [Drosophila mojavensis]
          Length = 404

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 184 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKYIGEGSRMVRE 231


>gi|195033139|ref|XP_001988626.1| GH10474 [Drosophila grimshawi]
 gi|193904626|gb|EDW03493.1| GH10474 [Drosophila grimshawi]
          Length = 529

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R V+L GP G+GK+ +A   + +S++T FS    SL S  I   + ++
Sbjct: 288 PPRGVLLFGPPGTGKTLIAKCIASQSKATFFSINPSSLTSKWIGEGEKLV 337


>gi|221061983|ref|XP_002262561.1| tat-binding protein homolog [Plasmodium knowlesi strain H]
 gi|193811711|emb|CAQ42439.1| tat-binding protein homolog, putative [Plasmodium knowlesi strain
           H]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 205 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKYIGEGSRMVRE 252


>gi|145248616|ref|XP_001400647.1| 26S protease subunit rpt4 [Aspergillus niger CBS 513.88]
 gi|134081314|emb|CAK41817.1| unnamed protein product [Aspergillus niger]
          Length = 389

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 169 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 216


>gi|154341274|ref|XP_001566590.1| katanin-like protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 445

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST 91
           P R ++L GP G+GKS LA   + ++  T
Sbjct: 162 PWRGILLYGPPGTGKSYLAKAVATEADGT 190


>gi|222632714|gb|EEE64846.1| hypothetical protein OsJ_19703 [Oryza sativa Japonica Group]
          Length = 855

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++ + ++  +
Sbjct: 534 PCRGILLFGPPGTGKTMLAKAIANDAGASFIN 565


>gi|126700421|ref|YP_001089318.1| Holliday junction DNA helicase RuvB [Clostridium difficile 630]
 gi|254976400|ref|ZP_05272872.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-66c26]
 gi|255093786|ref|ZP_05323264.1| Holliday junction DNA helicase RuvB [Clostridium difficile CIP
           107932]
 gi|255101976|ref|ZP_05330953.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-63q42]
 gi|255307844|ref|ZP_05352015.1| Holliday junction DNA helicase RuvB [Clostridium difficile ATCC
           43255]
 gi|255315537|ref|ZP_05357120.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-76w55]
 gi|255518200|ref|ZP_05385876.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-97b34]
 gi|255651316|ref|ZP_05398218.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-37x79]
 gi|260684380|ref|YP_003215665.1| Holliday junction DNA helicase RuvB [Clostridium difficile CD196]
 gi|260688039|ref|YP_003219173.1| Holliday junction DNA helicase RuvB [Clostridium difficile R20291]
 gi|306521148|ref|ZP_07407495.1| Holliday junction DNA helicase RuvB [Clostridium difficile
           QCD-32g58]
 gi|123363077|sp|Q183N8|RUVB_CLOD6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|115251858|emb|CAJ69693.1| Holliday junction ATP-dependent DNA helicase RuvB [Clostridium
           difficile]
 gi|260210543|emb|CBA65073.1| holliday junction DNA helicase [Clostridium difficile CD196]
 gi|260214056|emb|CBE06220.1| holliday junction DNA helicase [Clostridium difficile R20291]
          Length = 339

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I +++           +++           L + D+L  ++   
Sbjct: 61  VLLYGPPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAAILTNLNENDVLFIDEI-- 118

Query: 127 FHIINSIHQY 136
            H IN   + 
Sbjct: 119 -HRINRSVEE 127


>gi|84994200|ref|XP_951822.1| 26S proteasome ATPase subunit (Rpt6A homologue) [Theileria annulata
           strain Ankara]
 gi|65301983|emb|CAI74090.1| 26S proteasome ATPase subunit (Rpt6A homologue), putative
           [Theileria annulata]
          Length = 393

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 173 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKYIGEGSRMVRE 220


>gi|59896649|gb|AAX11693.1| DnaA [Oenococcus oeni]
 gi|59896651|gb|AAX11694.1| DnaA [Oenococcus oeni]
 gi|59896653|gb|AAX11695.1| DnaA [Oenococcus oeni]
          Length = 210

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87
            +      + D  ++  A E A     +    P R    +++ G SG GK+ L     ++
Sbjct: 99  DYQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNR 158

Query: 88  SRSTRFSNI--AKSLDSILIDTRKPV----------LLEDIDLLDFNDTQLF 127
            +  +   I    + D  + D    +            E++DLL  +D Q+ 
Sbjct: 159 LKELQPDAIVRYITTDDFMNDWVNAISKKTTTDFTSTYENVDLLLVDDIQML 210


>gi|59896637|gb|AAX11687.1| DnaA [Oenococcus oeni PSU-1]
 gi|59896641|gb|AAX11689.1| DnaA [Oenococcus oeni]
 gi|59896645|gb|AAX11691.1| DnaA [Oenococcus oeni]
 gi|59896647|gb|AAX11692.1| DnaA [Oenococcus oeni]
          Length = 210

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87
            +      + D  ++  A E A     +    P R    +++ G SG GK+ L     ++
Sbjct: 99  DYQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNR 158

Query: 88  SRSTRFSNI--AKSLDSILIDTRKPV----------LLEDIDLLDFNDTQLF 127
            +  +   I    + D  + D    +            E++DLL  +D Q+ 
Sbjct: 159 LKELQPDAIVRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDIQML 210


>gi|30018336|ref|NP_829967.1| cell division protein ftsH [Bacillus cereus ATCC 14579]
 gi|218234053|ref|YP_002364915.1| cell division protein FtsH [Bacillus cereus B4264]
 gi|296500898|ref|YP_003662598.1| cell division protein FtsH [Bacillus thuringiensis BMB171]
 gi|29893876|gb|AAP07168.1| Cell division protein ftsH [Bacillus cereus ATCC 14579]
 gi|218162010|gb|ACK62002.1| cell division protein FtsH [Bacillus cereus B4264]
 gi|296321950|gb|ADH04878.1| cell division protein ftsH [Bacillus thuringiensis BMB171]
          Length = 633

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +               +  L  +   ++     +  +++ A   P      L
Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIVAATNRPDILDPAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       + +  PD +  E V+      R   +D+ +    I  R       
Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 368

Query: 212 AEKLVDKMDNLALSRGM 228
           A  L + ++  AL    
Sbjct: 369 A-DLENLLNEAALVAAR 384


>gi|71031638|ref|XP_765461.1| 26S proteasome regulatory subunit [Theileria parva strain Muguga]
 gi|68352417|gb|EAN33178.1| 26S proteasome regulatory subunit, putative [Theileria parva]
          Length = 393

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 173 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKYIGEGSRMVRE 220


>gi|70982247|ref|XP_746652.1| proteasome regulatory particle subunit Rpt6 [Aspergillus fumigatus
           Af293]
 gi|119486698|ref|XP_001262335.1| proteasome regulatory particle subunit Rpt6, putative [Neosartorya
           fischeri NRRL 181]
 gi|66844275|gb|EAL84614.1| proteasome regulatory particle subunit Rpt6, putative [Aspergillus
           fumigatus Af293]
 gi|119410492|gb|EAW20438.1| proteasome regulatory particle subunit Rpt6, putative [Neosartorya
           fischeri NRRL 181]
 gi|159122112|gb|EDP47234.1| proteasome regulatory particle subunit Rpt6, putative [Aspergillus
           fumigatus A1163]
          Length = 389

 Score = 38.2 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 169 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 216


>gi|323967139|gb|EGB62563.1| ATPase [Escherichia coli M863]
 gi|327253680|gb|EGE65309.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli STEC_7v]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|312219121|emb|CBX99065.1| hypothetical protein [Leptosphaeria maculans]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           +V++L GP G GK+ LA++ + ++ 
Sbjct: 402 KVLLLTGPPGLGKTTLAHVCARQAG 426


>gi|331243191|ref|XP_003334239.1| 26S proteasome regulatory subunit 7 [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309313229|gb|EFP89820.1| 26S proteasome regulatory subunit 7 [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 508

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 64/175 (36%), Gaps = 38/175 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +T    I   L    +     ++          
Sbjct: 249 PPKGVMLFGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 308

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
                  +++D +                  +  +IN +       +  ++ A   P + 
Sbjct: 309 KACIIFFDEVDAIGGARHDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVIMATNRPDTL 368

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
              L  L   RL     V+ SLPD++    ++      R + +++ +   ++ R+
Sbjct: 369 DPAL--LRPGRLD--RRVEFSLPDNEGRANILKIHA--RSMSVERNIRYELIARL 417


>gi|302821786|ref|XP_002992554.1| hypothetical protein SELMODRAFT_236550 [Selaginella moellendorffii]
 gi|300139623|gb|EFJ06360.1| hypothetical protein SELMODRAFT_236550 [Selaginella moellendorffii]
          Length = 320

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + ++L GP G+GK+ +    + +S++T FS  A SL S  I   + ++
Sbjct: 42  PGKGLLLFGPPGTGKTMIGKAIAGESKATFFSISASSLTSKWIGEGEKLV 91


>gi|296103102|ref|YP_003613248.1| recombination factor protein RarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057561|gb|ADF62299.1| recombination factor protein RarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|302509196|ref|XP_003016558.1| hypothetical protein ARB_04847 [Arthroderma benhamiae CBS 112371]
 gi|291180128|gb|EFE35913.1| hypothetical protein ARB_04847 [Arthroderma benhamiae CBS 112371]
          Length = 881

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 609 PGLLLYGPPGTGKTMLAKAVARESGATVLE 638


>gi|297735750|emb|CBI18437.3| unnamed protein product [Vitis vinifera]
          Length = 1186

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 62   WPSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------SNIAKSLDSILIDTRKPVLL 113
            W    + L GPSG+GKS L    ++      +        SN    L  + + ++  +++
Sbjct: 980  WRRGYL-LYGPSGTGKSSLIAAMANHLNYDIYDMDLTGVRSNDDLRLLLLAMPSKAILVI 1038

Query: 114  EDIDL---LDFNDTQLFHIINSIH 134
            ED+D       N   L   +N I+
Sbjct: 1039 EDVDCDEVEAENQVTLSGFLNLIN 1062


>gi|256048950|ref|XP_002569488.1| 26S protease regulatory subunit [Schistosoma mansoni]
 gi|227281165|emb|CAY19061.1| 26S protease regulatory subunit, putative [Schistosoma mansoni]
          Length = 431

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 210 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRE 257


>gi|254500086|ref|ZP_05112238.1| type I secretion system ATPase subfamily [Labrenzia alexandrii
           DFL-11]
 gi|222441384|gb|EEE48062.1| type I secretion system ATPase subfamily [Labrenzia alexandrii
           DFL-11]
          Length = 544

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 63  PSRVVILVGPSGSGKS----CLANIWSDKSRSTRFSNIAKS 99
           P   + ++GPSGSGKS     L  +W     + R      +
Sbjct: 314 PGETIAVIGPSGSGKSSLIRHLVGVWPAAVGTVRIDGADIA 354


>gi|218291488|ref|ZP_03495389.1| IstB domain protein ATP-binding protein [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238685|gb|EED05906.1| IstB domain protein ATP-binding protein [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 209

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 23/114 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
              V+ L GP G GK+ LA     ++    +S     L  ++ D R+             
Sbjct: 47  AENVLFL-GPPGVGKTHLAVALGLEALRAGYSVYFSPLARLVEDLRRAYDERRLNVRMRP 105

Query: 111 ------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
                 ++++++     +       F ++N+ ++   SL++T+      WG  L
Sbjct: 106 YLRPKLLIVDEVGYTKLDPVAANVFFQLVNARYERG-SLILTSNKSFGEWGELL 158


>gi|254169043|ref|ZP_04875881.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197622013|gb|EDY34590.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 738

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            S+ ++L GP G+GK+ LA   + +S +   S
Sbjct: 498 ASKGILLYGPPGTGKTLLAKAVATESEANFIS 529



 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ +A   +++S +  ++
Sbjct: 221 PPKGVLLYGPPGTGKTLIAKAVANESNAHFYA 252


>gi|254415770|ref|ZP_05029528.1| ATPase, AAA family protein [Microcoleus chthonoplastes PCC 7420]
 gi|196177476|gb|EDX72482.1| ATPase, AAA family protein [Microcoleus chthonoplastes PCC 7420]
          Length = 374

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 27/138 (19%)

Query: 5   KEDYSFFVPDKQK---NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI----- 56
           K DY+    ++ K     +P    EQL            +DLL       AV LI     
Sbjct: 72  KSDYNLSPEERAKKYKASKPLFTFEQLV-----VTKEVEEDLL------LAVDLIQLESK 120

Query: 57  --DSW---PSWPSRVVIL--VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
             D W      P     L   G  G+GK+  A+  + K            ++S+      
Sbjct: 121 VFDEWGLRQIEPFPRTALNFHGKPGTGKTLAAHAIASKINRPILVASYAQIESMY-HGEG 179

Query: 110 PVLLEDIDLLDFNDTQLF 127
           P  +E I +    +  L 
Sbjct: 180 PKNVEAIFMAAERENALL 197


>gi|170088861|ref|XP_001875653.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648913|gb|EDR13155.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1094

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 53  VRLIDSWPS-WPSRVVI-LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           V L++  P   P  V+I +VGP G GK+ L      +      +++   +  +    R+ 
Sbjct: 63  VPLVNRTPDDEPPPVIIAIVGPPGVGKTTLLKSLVRRYTKQMLNDVKGPVTVVSGKKRRL 122

Query: 111 VLLE---D----IDLLDFNDTQLFHIINSIHQYDSS 139
             +E   D    ID+    D + F  +N +  +   
Sbjct: 123 TFIECNNDLNSMIDIGKIADLETFEFLNILQSHGFP 158


>gi|15843222|ref|NP_338259.1| cell division protein FtsH [Mycobacterium tuberculosis CDC1551]
 gi|13883577|gb|AAK48073.1| cell division protein FtsH [Mycobacterium tuberculosis CDC1551]
 gi|323717718|gb|EGB26918.1| membrane-bound ell division protein ftsH [Mycobacterium
           tuberculosis CDC1551A]
          Length = 760

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 19/81 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K++ +QL    P+         D          D L + +  QA+         P  V+ 
Sbjct: 147 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 200

Query: 69  LVGPSGSGKSCLANIWSDKSR 89
           L GP G+GK+ LA   + ++ 
Sbjct: 201 LYGPPGTGKTLLARAVAGEAG 221


>gi|15800755|ref|NP_286769.1| recombination factor protein RarA [Escherichia coli O157:H7 EDL933]
 gi|25329891|pir||G85614 probable polynucleotide enzyme ycaJ [imported] - Escherichia coli
           (strain O157:H7, substrain EDL933)
 gi|12514054|gb|AAG55379.1|AE005278_5 putative polynucleotide enzyme [Escherichia coli O157:H7 str.
           EDL933]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|322712485|gb|EFZ04058.1| hypothetical protein MAA_01132 [Metarhizium anisopliae ARSEF 23]
          Length = 958

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           ++++L GP G GK+ LA++ + ++        A  
Sbjct: 278 KILMLTGPPGLGKTTLAHVCAKQAGYEVLEVNASD 312


>gi|322497581|emb|CBZ32655.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 945

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L G  GSGK+ LA   +++S +  F+
Sbjct: 684 LLLYGAPGSGKTLLAYAIANESGARFFN 711


>gi|322489582|emb|CBZ24840.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 945

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L G  GSGK+ LA   +++S +  F+
Sbjct: 684 LLLYGAPGSGKTLLAYAIANESGARFFN 711


>gi|316953672|gb|ADN88299.2| IstB [Lysobacter ruishenii]
          Length = 257

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 26/120 (21%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKSCLANIW---SDKSR----------------STRF 93
           +R I+   +      +L+GPSG GK+ LA      + ++                 + R 
Sbjct: 95  LRFIERSQN-----AVLLGPSGVGKTHLAIAIGYAATQAGIKTKFITAADLMLQLEAARR 149

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI--HQYDSSLLMTARTFPVSW 151
                ++    I   + +++++I  L  +  Q  H    +       S+++T+      W
Sbjct: 150 QERYDAVLRHNILGPRLLIVDEIGYLPLSGDQASHFFQIVAKRYERGSMILTSNLPFTQW 209


>gi|300742493|ref|ZP_07072514.1| putative cell division protein [Rothia dentocariosa M567]
 gi|300381678|gb|EFJ78240.1| putative cell division protein [Rothia dentocariosa M567]
          Length = 722

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   + ++ +  +S        + +      + +
Sbjct: 182 VLLYGPPGTGKTLLAKAVAGEAGAPFYSISGSDFVEMFVGVGASRVRD 229


>gi|298706119|emb|CBJ29212.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 531

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R V+L GP G+GK+ LA   + +S    F+  A SL S  +   + ++
Sbjct: 293 PARGVLLYGPPGTGKTMLAKAVATESGYAFFNISASSLTSKYVGEGEKMV 342


>gi|291232715|ref|XP_002736300.1| PREDICTED: vacuolar protein sorting factor 4B-like [Saccoglossus
           kowalevskii]
          Length = 440

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F  ++ S
Sbjct: 162 PWRGILLFGPPGTGKSYLAKAVATEADNSTFFAVSSS 198


>gi|257465474|ref|ZP_05629845.1| hypothetical protein AM202_03115 [Actinobacillus minor 202]
 gi|257451134|gb|EEV25177.1| hypothetical protein AM202_03115 [Actinobacillus minor 202]
          Length = 1387

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSR 89
            +V++L G +GSGKS L   +  KS+
Sbjct: 327 GKVLVLTGQAGSGKSHLLGDFVQKSQ 352


>gi|253742786|gb|EES99475.1| Spastin [Giardia intestinalis ATCC 50581]
          Length = 1118

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           S  +++ G  G GK+ L+ I + ++ +    
Sbjct: 781 SNTLLIYGAPGVGKTLLSRIIATETGALVID 811


>gi|295669242|ref|XP_002795169.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb01]
 gi|226285103|gb|EEH40669.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb01]
          Length = 539

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 72/198 (36%), Gaps = 34/198 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------------IAKSLDSILIDTRKPV 111
             ++L G +G+GK+ +A + +    S                   A++ + + +  +K +
Sbjct: 157 PSMVLWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVAECKKLFAEARNELSLSGKKTI 216

Query: 112 LL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170
           L  ++I     +   +F  ++ +     +L+ T    P  + V    L SR        +
Sbjct: 217 LFCDEIHRFSKSQQDVF--LSPVESGQITLIGTTTENPS-FKVQNA-LLSR---CRTFTL 269

Query: 171 SLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVD-KMD--- 220
           +   D  +  ++ +              +D +L  Y+    +     +  L++  MD   
Sbjct: 270 AKLTDQDIIMILNRALEVEGPNYSPSSLVDDELIKYLAAFADGDARTSLNLLELAMDLSR 329

Query: 221 NLALSR---GMGITRSLA 235
              +++      +TR+L 
Sbjct: 330 REGMTKDELKKSLTRTLV 347


>gi|215424853|ref|ZP_03422772.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium
           tuberculosis T92]
          Length = 755

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 82/268 (30%), Gaps = 62/268 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K++ +QL    P+         D          D L + +  QA+         P  V+ 
Sbjct: 142 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 195

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112
           L GP G+GK+ LA   + ++    F+        + +                     + 
Sbjct: 196 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIF 255

Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157
           +++ID +               +  L  +   ++        +L+ A   P      L  
Sbjct: 256 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPAL-- 313

Query: 158 LCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
               L+       + +S PD      V+      + +  D  L   + +R    +  A  
Sbjct: 314 ----LRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADL-DGLAKRTV-GMTGA-D 366

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242
           L + ++  AL         +    L+E 
Sbjct: 367 LANVINEAALLTARENGTVITGPALEEA 394


>gi|297201400|ref|ZP_06918797.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083]
 gi|197713809|gb|EDY57843.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083]
          Length = 666

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    +S        + +      + +  +    N   +
Sbjct: 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 255


>gi|172040616|ref|YP_001800330.1| Holliday junction DNA helicase RuvB [Corynebacterium urealyticum
           DSM 7109]
 gi|171851920|emb|CAQ04896.1| ruvB [Corynebacterium urealyticum DSM 7109]
          Length = 367

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 69/199 (34%), Gaps = 31/199 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSLDSILIDT----RKPVLLEDIDL 118
           V+L GP G GK+ +A I + +  S    T    + ++ D   + +       + +++I  
Sbjct: 86  VLLAGPPGLGKTTMAMIIAQELGSSLRMTSGPALERAGDLAAMLSNLMEGDVLFIDEIHR 145

Query: 119 LDFN-DTQLFHIINSIH----------------QYDSSLLMTARTFPVSWGVCLPDLCSR 161
           +    +  L+  +                    +     L+ A T        L D    
Sbjct: 146 MARPAEEMLYMAMEDFRIDVIVGKGPGATSIPIEIAPFTLVGATTRAGMLTGPLRD---- 201

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220
            +     ++   D   L +V+ +      + ID   A  I  R   +   A +L+ ++ D
Sbjct: 202 -RFGFTAQMEFYDTPELTRVVTRAAGILGVDIDSDAATEIASRSRGTPRIANRLLRRVRD 260

Query: 221 NLALSRGMGITRSLAAEVL 239
              +     IT  +A + L
Sbjct: 261 YADVQADGRITVDIARQAL 279


>gi|157146420|ref|YP_001453739.1| recombination factor protein RarA [Citrobacter koseri ATCC BAA-895]
 gi|157083625|gb|ABV13303.1| hypothetical protein CKO_02179 [Citrobacter koseri ATCC BAA-895]
          Length = 428

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 34  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 89

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 90  ILFVDEVHRFNKSQQD 105


>gi|134282136|ref|ZP_01768842.1| transposase [Burkholderia pseudomallei 305]
 gi|134246665|gb|EBA46753.1| transposase [Burkholderia pseudomallei 305]
          Length = 282

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 46/108 (42%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------------ 109
           ++ +G  G+GK+ LA  +        ++  RF    + ++ + ++               
Sbjct: 113 IVFIGGPGTGKTHLATAFGIEAVQQHAKRVRFFTTVELVNQLELEKAAGKAGQIANRLMY 172

Query: 110 --PVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
              V+L+++  L F  T    LFH+ + +++  +S+++T       W 
Sbjct: 173 VDAVILDELGYLPFTQTGGALLFHLFSKLYER-TSIIVTTNLSFTEWS 219


>gi|150378405|ref|YP_001314999.1| IstB ATP binding domain-containing protein [Sinorhizobium medicae
           WSM419]
 gi|150032952|gb|ABR65066.1| IstB domain protein ATP-binding protein [Sinorhizobium medicae
           WSM419]
          Length = 244

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 24/125 (19%)

Query: 67  VILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLE---DI 116
           ++LVG +G+GKS L+   +        + R     ++   L++   + ++  L +    +
Sbjct: 101 IVLVGGTGTGKSHLSIALARALIRNGARGRFFNVVDLVNRLETEARNGKQGRLADFITRL 160

Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165
           D +  ++             LFH+I+ +++  +S+++T       W     D    + AA
Sbjct: 161 DFVIMDELGYLPFAQAGGQLLFHLISRLYER-TSIIVTTNLAFGEWPAVFGDAK--MTAA 217

Query: 166 TVVKI 170
            + ++
Sbjct: 218 LLDRL 222


>gi|24379125|ref|NP_721080.1| nitrate ABC transporter ATP-binding protein [Streptococcus mutans
          UA159]
 gi|24377029|gb|AAN58386.1|AE014909_2 putative ABC transporter, ATP-binding protein; possible nitrate
          transport system [Streptococcus mutans UA159]
          Length = 249

 Score = 38.2 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90
          P   + LVGPSGSGK+ L  I +   ++
Sbjct: 36 PGEFISLVGPSGSGKTTLLRIIAGLEKA 63


>gi|326502846|dbj|BAJ99051.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 336

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
          P R ++L GP G+GK+ LA   +++++++  +
Sbjct: 60 PCRGILLFGPPGTGKTMLAKAIANEAQASFIN 91


>gi|320178280|gb|EFW53254.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella
           boydii ATCC 9905]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|320173742|gb|EFW48925.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella
           dysenteriae CDC 74-1112]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|315050962|ref|XP_003174855.1| chromosome transmission fidelity protein 18 [Arthroderma gypseum
           CBS 118893]
 gi|311340170|gb|EFQ99372.1| chromosome transmission fidelity protein 18 [Arthroderma gypseum
           CBS 118893]
          Length = 974

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           ++++L GP G GK+ LA+I + +         A    S  + T +
Sbjct: 289 KILLLTGPPGLGKTTLAHICAKQVGYEVLEINASDERSRTVVTGR 333


>gi|308274785|emb|CBX31384.1| Uncharacterized ABC transporter ATP-binding protein yvrO
           [uncultured Desulfobacterium sp.]
          Length = 234

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            + L+GPSGSGKS L N+ +   ++   S IA+ +D  L+   + +     D + F    
Sbjct: 36  FLALMGPSGSGKSTLLNLIAGLDKADSGSIIAQGIDISLLIETE-LAKWRADNVGF---- 90

Query: 126 LFHIINSI 133
           +F   N I
Sbjct: 91  IFQFYNLI 98


>gi|301049645|ref|ZP_07196594.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 185-1]
 gi|300298582|gb|EFJ54967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 185-1]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|297852714|ref|XP_002894238.1| hypothetical protein ARALYDRAFT_891950 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297340080|gb|EFH70497.1| hypothetical protein ARALYDRAFT_891950 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 720

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 303 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 349


>gi|293433189|ref|ZP_06661617.1| replication-associated recombination protein A [Escherichia coli
           B088]
 gi|291324008|gb|EFE63430.1| replication-associated recombination protein A [Escherichia coli
           B088]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|292487470|ref|YP_003530342.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Erwinia
           amylovora CFBP1430]
 gi|292898712|ref|YP_003538081.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291198560|emb|CBJ45668.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291552889|emb|CBA19934.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia
           amylovora CFBP1430]
 gi|312171575|emb|CBX79833.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia
           amylovora ATCC BAA-2158]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD +V                
Sbjct: 46  DIIREEIKEIAPHRERSSLPT----------PHEIRHHLDDYVVGQERAKKVLSVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETMA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|292487468|ref|YP_003530340.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Erwinia
           amylovora CFBP1430]
 gi|292898710|ref|YP_003538079.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291198558|emb|CBJ45666.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora
           ATCC 49946]
 gi|291552887|emb|CBA19932.1| ATP-dependent Clp protease ATP-binding subunit clpX [Erwinia
           amylovora CFBP1430]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD +V                
Sbjct: 46  DIIREEIKEIAPHRERSSLPT----------PHEIRHHLDDYVVGQERAKKVLSVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETMA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|302657710|ref|XP_003020571.1| hypothetical protein TRV_05340 [Trichophyton verrucosum HKI 0517]
 gi|291184417|gb|EFE39953.1| hypothetical protein TRV_05340 [Trichophyton verrucosum HKI 0517]
          Length = 887

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 615 PGLLLYGPPGTGKTMLAKAVARESGATVLE 644


>gi|283784264|ref|YP_003364129.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter
           rodentium ICC168]
 gi|282947718|emb|CBG87273.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter
           rodentium ICC168]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|254884183|ref|ZP_05256893.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|255013701|ref|ZP_05285827.1| hypothetical protein B2_07332 [Bacteroides sp. 2_1_7]
 gi|254836976|gb|EET17285.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 621

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 49  IEQAVRLIDSWPSWPSR--VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106
               +  ++S+   P+    V+L G  G GK+ L   W  +   T  ++   +L  I I 
Sbjct: 2   NTLILDFLNSYADNPNPQYAVMLKGKWGCGKTHLIKQWKKRFDETADTDEEITLKPIYIS 61

Query: 107 TRKPVLLEDI 116
           T     + DI
Sbjct: 62  TYGMDSVNDI 71


>gi|237730857|ref|ZP_04561338.1| recombination factor protein RarA [Citrobacter sp. 30_2]
 gi|226906396|gb|EEH92314.1| recombination factor protein RarA [Citrobacter sp. 30_2]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|237730415|ref|ZP_04560896.1| ATP-dependent Clp protease ATP-binding subunit clpX [Citrobacter
           sp. 30_2]
 gi|283834243|ref|ZP_06353984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citrobacter
           youngae ATCC 29220]
 gi|226905954|gb|EEH91872.1| ATP-dependent Clp protease ATP-binding subunit clpX [Citrobacter
           sp. 30_2]
 gi|291069763|gb|EFE07872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citrobacter
           youngae ATCC 29220]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|217076234|ref|YP_002333950.1| udk phosphoribulokinase family protein [Thermosipho africanus
           TCF52B]
 gi|217036087|gb|ACJ74609.1| udk phosphoribulokinase family protein [Thermosipho africanus
           TCF52B]
          Length = 558

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----DIDLLD 120
           R++++ GPS SGK+  +     + R++    +  SLD   +D  +  L E    D + L+
Sbjct: 293 RLILIAGPSSSGKTTFSKRLMVQLRASGLRPVTISLDDYFVDRERTPLDENGKPDFEALE 352

Query: 121 FNDTQLFH 128
             D +LF+
Sbjct: 353 AIDIELFN 360


>gi|226499392|ref|NP_001147924.1| ATPase, coupled to transmembrane movement of substances [Zea mays]
 gi|195614622|gb|ACG29141.1| ATPase, coupled to transmembrane movement of substances [Zea mays]
          Length = 606

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 26/47 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           P  +V +VGPSG+GK+ L ++ +  +   R +     ++ + +D  +
Sbjct: 58  PGELVAIVGPSGAGKTTLLSVLAGSADPARVAAGEVLVNGLPMDAAR 104


>gi|193695148|ref|XP_001948503.1| PREDICTED: 26S protease regulatory subunit 7-like [Acyrthosiphon
           pisum]
          Length = 437

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 212 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 271

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 272 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 331

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 332 DPALMRPGRLDRKVEFGLPDLEGR 355


>gi|187251727|ref|YP_001876209.1| ATP-dependent metalloprotease FtsH [Elusimicrobium minutum Pei191]
 gi|186971887|gb|ACC98872.1| ATP-dependent metalloprotease FtsH [Elusimicrobium minutum Pei191]
          Length = 631

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           V+L G  G+GK+ LA   + ++    FS  A     + +      + +  D  
Sbjct: 197 VLLYGAPGTGKTLLAKATAGEAGVAFFSASASEFVEMFVGVGASRVRDLFDKA 249


>gi|159028065|emb|CAO87142.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 617

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCI 257

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 258 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD    ++++      R   + + +    I +R       
Sbjct: 318 ------LRPGRFDRQVVVDRPDYAGRKEILNVH--SRGKTLAQDVDLDKIARRTP-GFTG 368

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 369 A-DLANLLNEAAILAARRNLT 388


>gi|157146945|ref|YP_001454264.1| ATP-dependent protease ATP-binding subunit ClpX [Citrobacter koseri
           ATCC BAA-895]
 gi|166214770|sp|A8AK15|CLPX_CITK8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157084150|gb|ABV13828.1| hypothetical protein CKO_02722 [Citrobacter koseri ATCC BAA-895]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|149186572|ref|ZP_01864884.1| ATPase [Erythrobacter sp. SD-21]
 gi|148829799|gb|EDL48238.1| ATPase [Erythrobacter sp. SD-21]
          Length = 438

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 10/77 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ +A + +D         S +   +  +                    T
Sbjct: 61  MILWGPPGTGKTTIARLLADSVGMRFESVSAVFSGVADLKKAFAAAD----KAAEAGQRT 116

Query: 125 QLF----HIINSIHQYD 137
            LF    H  N   Q  
Sbjct: 117 LLFVDEIHRFNRAQQDG 133


>gi|170020706|ref|YP_001725660.1| recombination factor protein RarA [Escherichia coli ATCC 8739]
 gi|312971019|ref|ZP_07785198.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 1827-70]
 gi|169755634|gb|ACA78333.1| AAA ATPase central domain protein [Escherichia coli ATCC 8739]
 gi|310336780|gb|EFQ01947.1| ATPase family associated with various cellular activities (AAA)
           family protein [Escherichia coli 1827-70]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|157866380|ref|XP_001681896.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125195|emb|CAJ03161.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 945

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L G  GSGK+ LA   +++S +  F+
Sbjct: 684 LLLYGAPGSGKTLLAYAIANESGARFFN 711


>gi|115435412|ref|NP_001042464.1| Os01g0226400 [Oryza sativa Japonica Group]
 gi|56784122|dbj|BAD81507.1| unknown protein [Oryza sativa Japonica Group]
 gi|56784165|dbj|BAD81550.1| unknown protein [Oryza sativa Japonica Group]
 gi|113531995|dbj|BAF04378.1| Os01g0226400 [Oryza sativa Japonica Group]
 gi|215717126|dbj|BAG95489.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 840

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   +++++++  +
Sbjct: 565 PCRGILLFGPPGTGKTMLAKAIANEAQASFIN 596


>gi|86607410|ref|YP_476173.1| AAA family ATPase [Synechococcus sp. JA-3-3Ab]
 gi|86555952|gb|ABD00910.1| ATPase, AAA family [Synechococcus sp. JA-3-3Ab]
          Length = 629

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 33/193 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112
           ++L GP G+GK+ LA   + ++++   +     L S  + + +  +              
Sbjct: 409 ILLSGPPGTGKTLLAKAIASQAKANFIAVSGPELLSKWVGSSEQAVRELFARARQCAPCV 468

Query: 113 --LEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
             +++ID L                   QL   ++ I      L++ A     S    L 
Sbjct: 469 IFIDEIDTLAPARGSYSGDSGVSDRVLGQLLAELDGIRPSQGVLVVAATNRKASLDPALT 528

Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
               RL+    + + LPD     +++      R +  D  L  +  +    S      L 
Sbjct: 529 R-AGRLE--LHLSVELPDRAARREILAVHNRRRPLGPDVDLEVWAERTEGWSGADLALLS 585

Query: 217 DKMDNLALSRGMG 229
           ++    A+ R   
Sbjct: 586 NRAAIAAIRRHRA 598


>gi|82542926|ref|YP_406873.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella boydii
           Sb227]
 gi|123560438|sp|Q325G3|CLPX_SHIBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81244337|gb|ABB65045.1| ATP-dependent specificity component of clpP serine protease
           [Shigella boydii Sb227]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|24639486|ref|NP_570054.2| CG10793 [Drosophila melanogaster]
 gi|7290407|gb|AAF45864.1| CG10793 [Drosophila melanogaster]
          Length = 479

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           P R ++L GP GSGK+ LA     +++   
Sbjct: 238 PWRSLLLHGPPGSGKTLLAKALYSETQGQV 267


>gi|15379|emb|CAA25341.1| unnamed protein product [Enterobacteria phage T4]
          Length = 319

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 70/184 (38%), Gaps = 36/184 (19%)

Query: 65  RVVILVGPS-GSGKSCLANIWSDKSRS--------------TRFSNIAKSLDSILIDTRK 109
             +IL  PS G+GK+ +A        +               R      +  +     +K
Sbjct: 43  PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQK 102

Query: 110 PVLLEDIDLLDFNDTQLFHI--INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167
            +++++ D     ++Q  H+      +  +SS+++TA     +    +  L SR     V
Sbjct: 103 VIVIDEFDRSGLAESQR-HLRSFMEAYSSNSSIIITA----NNIDGIIKPLQSR---CRV 154

Query: 168 VKISLPDD----DFLEKVIVKM---FADRQIFIDK-KLAAYIVQRMERSLVFAEKLVDKM 219
           +    P D    + ++++I  +        I I   K+ A +V++   +     K + ++
Sbjct: 155 ITFGQPTDEDKIEMMKQMIRGLTEICKHEGIAIADMKVVAALVKK---NFPDFRKTIGEL 211

Query: 220 DNLA 223
           D  +
Sbjct: 212 DTYS 215


>gi|19112662|ref|NP_595870.1| 19S proteasome regulatory subunit Rpt6 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1170767|sp|P41836|PRS8_SCHPO RecName: Full=26S protease regulatory subunit 8 homolog; AltName:
           Full=Protein let1
 gi|406051|gb|AAA61615.1| Let1 [Schizosaccharomyces pombe]
 gi|4106689|emb|CAA22628.1| 19S proteasome regulatory subunit Rpt6 (predicted)
           [Schizosaccharomyces pombe]
          Length = 403

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 63  PSRV-VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P    ++L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 177 PQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRE 229


>gi|116203799|ref|XP_001227710.1| hypothetical protein CHGG_09783 [Chaetomium globosum CBS 148.51]
 gi|88175911|gb|EAQ83379.1| hypothetical protein CHGG_09783 [Chaetomium globosum CBS 148.51]
          Length = 1030

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   ++L GP G+GKS LA   + ++  T FS
Sbjct: 435 PPSAILLYGPPGTGKSYLAKAVATEADHTFFS 466


>gi|188495408|ref|ZP_03002678.1| ATPase, AAA family [Escherichia coli 53638]
 gi|188490607|gb|EDU65710.1| ATPase, AAA family [Escherichia coli 53638]
          Length = 447

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|329296783|ref|ZP_08254119.1| ATP-dependent protease ATP-binding subunit ClpX [Plautia stali
           symbiont]
          Length = 423

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEKAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|325684423|gb|EGD26591.1| ATPase [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 434

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 65/181 (35%), Gaps = 28/181 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------VLLEDID 117
           +IL GP G GK+ +A+  +  SR       A +     +              +LL++I 
Sbjct: 41  MILYGPPGIGKTSIASAIAGSSRYAFRQLNAATDGQKELSQVAAEGKMSGTVVLLLDEIH 100

Query: 118 LLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176
            L+      L  ++    +    +++ A T      +  P + SR     + ++    ++
Sbjct: 101 RLNKVKQDFLLPLL----ESGQVIMIGATTENPYLAIS-PAIRSR---CQIFELKPLTEE 152

Query: 177 FLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229
            +   + +   D  R +      + K+   ++ Q+           ++ ++   LS    
Sbjct: 153 EILTAVDRALTDEERGLGKYHAKLTKEAGEFLAQKGN---GDLRATLNSLELAVLSTKQE 209

Query: 230 I 230
           +
Sbjct: 210 L 210


>gi|325000127|ref|ZP_08121239.1| membrane protease FtsH catalytic subunit [Pseudonocardia sp. P1]
          Length = 846

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 46/148 (31%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GP G+GK+ LA   + ++    ++        + +                     
Sbjct: 204 VLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEMFVGVGASRVRDLFEQAKQNAPCI 263

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSW---- 151
           + +++ID +               +  L  +   ++        +L+ A   P       
Sbjct: 264 IFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFDARGGIILIAATNRPDILDPAL 323

Query: 152 ----------GVCLPDLCSRLKAATVVK 169
                      V  PDL  R +A   V 
Sbjct: 324 LRPGRFDRQIPVAAPDLAGR-RAILSVH 350


>gi|325286769|ref|YP_004262559.1| Holliday junction ATP-dependent DNA helicase ruvB [Cellulophaga
           lytica DSM 7489]
 gi|324322223|gb|ADY29688.1| Holliday junction ATP-dependent DNA helicase ruvB [Cellulophaga
           lytica DSM 7489]
          Length = 340

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 21/99 (21%)

Query: 38  ISRDDL------------LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           +S DD              V +A ++   L            +  GP G GK+ LA+I +
Sbjct: 26  LSFDDFAGQDQVLENLKVFVEAANQRGEAL---------DHTLFHGPPGLGKTTLAHILA 76

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++            LD           LE+ D+L  ++ 
Sbjct: 77  NELGVGIKVTSGPVLDKPGDLAGLLTNLEERDVLFIDEI 115


>gi|322505327|emb|CAM40103.2| vacuolar protein sorting-associated protein 4 [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 445

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST 91
           P R ++L GP G+GKS LA   + ++  T
Sbjct: 162 PWRGILLYGPPGTGKSYLAKAVATEADGT 190


>gi|300930259|ref|ZP_07145672.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 187-1]
 gi|300461831|gb|EFK25324.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 187-1]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|298709650|emb|CBJ31458.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 951

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           D LV  +   A   + +    P  ++ LVGP G+GK+ +A   + ++            +
Sbjct: 443 DFLVDPS---AYDSLGASR--PKGIL-LVGPPGTGKTLIAKACAGEAGVPFLYACGSEFN 496

Query: 102 SILIDTRKPVL 112
            + +      +
Sbjct: 497 GVYVGMGVAAV 507


>gi|315503511|ref|YP_004082398.1| adenosinetriphosphatase [Micromonospora sp. L5]
 gi|315410130|gb|ADU08247.1| Adenosinetriphosphatase [Micromonospora sp. L5]
          Length = 746

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 14/80 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GP G GK+ L    +   R+   S     L S  +   +  + E        
Sbjct: 518 PPRGVLLYGPPGCGKTYLVTALAGSGRANVLSVKGAELLSKWVGESERAVRE-------- 569

Query: 123 DTQLFHIINSIHQYDSSLLM 142
                 +     Q   +L+ 
Sbjct: 570 ------LFRRARQAAPTLVF 583


>gi|260596810|ref|YP_003209381.1| ATP-dependent protease ATP-binding subunit ClpX [Cronobacter
           turicensis z3032]
 gi|260215987|emb|CBA28640.1| ATP-dependent Clp protease ATP-binding subunit clpX [Cronobacter
           turicensis z3032]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRSHLDDYVIGQEKAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|317047176|ref|YP_004114824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           At-9b]
 gi|316948793|gb|ADU68268.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           At-9b]
          Length = 423

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEKAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|255075347|ref|XP_002501348.1| proteasomal ATPase [Micromonas sp. RCC299]
 gi|226516612|gb|ACO62606.1| proteasomal ATPase [Micromonas sp. RCC299]
          Length = 399

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 181 VILYGPPGTGKTLLARAVAHHTDCCFIRVSGSELVQKYIGEGARMVRE 228


>gi|303286279|ref|XP_003062429.1| proteasomal ATPase [Micromonas pusilla CCMP1545]
 gi|226455946|gb|EEH53248.1| proteasomal ATPase [Micromonas pusilla CCMP1545]
          Length = 402

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 184 VILYGPPGTGKTLLARAVAHHTDCCFIRVSGSELVQKYIGEGARMVRE 231


>gi|225714250|gb|ACO12971.1| 26S protease regulatory subunit 7 [Lepeophtheirus salmonis]
          Length = 435

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 61/206 (29%), Gaps = 48/206 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 270 KACLIFFDEIDAVGGARYDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDIL 329

Query: 148 -PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR-M 205
            P        D          V+  LPD +    +       R + +++ +   ++ R  
Sbjct: 330 DPALMRPGRLDRK--------VEFGLPDMEGRTNIFKIHA--RSMSVERDIRYELLARLC 379

Query: 206 ERSLVF-AEKLVDKMDNLALSRGMGI 230
             S       +  +    A+     +
Sbjct: 380 PNSTGAEIRSVCTEAGMFAIRSRRKV 405


>gi|298489876|ref|YP_003720053.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
 gi|298231794|gb|ADI62930.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708]
          Length = 613

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKTNAPCI 253

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 254 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 313

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD     +++      R   + K +    I +R       
Sbjct: 314 ------LRPGRFDRQVVVDRPDYGGRSEILKVHA--RGKTLSKDVDLDKIARRTP-GFTG 364

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 365 A-DLSNLLNEAAILAARRNLT 384


>gi|224031915|gb|ACN35033.1| unknown [Zea mays]
          Length = 463

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 58  LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 104


>gi|242808792|ref|XP_002485237.1| proteasome regulatory particle subunit Rpt4, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218715862|gb|EED15284.1| proteasome regulatory particle subunit Rpt4, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 410

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIRE 221


>gi|218187789|gb|EEC70216.1| hypothetical protein OsI_00975 [Oryza sativa Indica Group]
          Length = 841

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   +++++++  +
Sbjct: 565 PCRGILLFGPPGTGKTMLAKAIANEAQASFIN 596


>gi|196007464|ref|XP_002113598.1| hypothetical protein TRIADDRAFT_63994 [Trichoplax adhaerens]
 gi|190584002|gb|EDV24072.1| hypothetical protein TRIADDRAFT_63994 [Trichoplax adhaerens]
          Length = 539

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + ++++  F+  A SL S  +   + ++
Sbjct: 285 PARGLLLFGPPGNGKTMLAKAVASEAKAKFFNISASSLTSKYVGESEKLV 334


>gi|156935009|ref|YP_001438925.1| ATP-dependent protease ATP-binding subunit ClpX [Cronobacter
           sakazakii ATCC BAA-894]
 gi|166214776|sp|A7MFI7|CLPX_ENTS8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|156533263|gb|ABU78089.1| hypothetical protein ESA_02860 [Cronobacter sakazakii ATCC BAA-894]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRSHLDDYVIGQEKAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|148671241|gb|EDL03188.1| proteasome (prosome, macropain) 26S subunit, ATPase 2, isoform
           CRA_a [Mus musculus]
          Length = 394

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 169 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 228

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 229 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 288

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 289 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 329

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 330 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 364


>gi|170722571|ref|YP_001750259.1| recombination factor protein RarA [Pseudomonas putida W619]
 gi|169760574|gb|ACA73890.1| AAA ATPase central domain protein [Pseudomonas putida W619]
          Length = 441

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 32/210 (15%)

Query: 57  DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
           ++        +I  GP G GK+ LA + +    +  F  ++  L  +    +   + +  
Sbjct: 40  EALEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98

Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162
                  T LF    H  N   Q        D +L+    T              L SR 
Sbjct: 99  AGQYGRRTILFVDEVHRFNKSQQDAFLPFVEDGTLIFIGATTENPSFELNNA---LLSR- 154

Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216
             A V  +   D+  L K++ +   +      R + +       ++   +       +++
Sbjct: 155 --ARVYVLKSLDEPALRKLVDRALNEERGLGKRNLSVGDDAFRMLMAAAD---GDGRRML 209

Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244
           + ++N + L+  G  I   L   +L ++++
Sbjct: 210 NFLENASDLAEDGGEIGVDLLQSLLGDSRR 239


>gi|120437189|ref|YP_862875.1| recombination factor protein RarA [Gramella forsetii KT0803]
 gi|117579339|emb|CAL67808.1| AAA family ATPase [Gramella forsetii KT0803]
          Length = 424

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 65 RVVILVGPSGSGKSCLANIWSDKSR 89
            +I  GP G GK+ LANI + +S 
Sbjct: 40 PSMIFWGPPGVGKTTLANIIATESG 64


>gi|114797326|ref|YP_758892.1| ATP-dependent metalloprotease FtsH [Hyphomonas neptunium ATCC
           15444]
 gi|114737500|gb|ABI75625.1| ATP-dependent metalloprotease FtsH [Hyphomonas neptunium ATCC
           15444]
          Length = 639

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 43/210 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 191 ALLVGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKRSAPCI 250

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++     +  ++M A   P      L
Sbjct: 251 IFIDEIDAVGRSRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIIIMAATNRPDVLDPAL 310

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD    EK++      R + + K +    + R       A
Sbjct: 311 ------LRPGRFDRQVTVGNPDIIGREKILRVHM--RNVPLAKDVETKTIARGTPGFSGA 362

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242
             L + ++  AL       R +A +  ++ 
Sbjct: 363 -DLANLVNEAALLAARRGKRVVAMQEFEDA 391


>gi|15610081|ref|NP_217460.1| IS1533 transposase [Mycobacterium tuberculosis H37Rv]
 gi|148662791|ref|YP_001284314.1| ISMt3 transposase B2 [Mycobacterium tuberculosis H37Ra]
 gi|148824133|ref|YP_001288887.1| transposase [Mycobacterium tuberculosis F11]
 gi|289444503|ref|ZP_06434247.1| transposase [Mycobacterium tuberculosis T46]
 gi|289448611|ref|ZP_06438355.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289553266|ref|ZP_06442476.1| transposase [Mycobacterium tuberculosis KZN 605]
 gi|289571137|ref|ZP_06451364.1| transposase [Mycobacterium tuberculosis T17]
 gi|289575650|ref|ZP_06455877.1| transposase [Mycobacterium tuberculosis K85]
 gi|289746744|ref|ZP_06506122.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289755059|ref|ZP_06514437.1| transposase [Mycobacterium tuberculosis EAS054]
 gi|289759068|ref|ZP_06518446.1| transposase [Mycobacterium tuberculosis T85]
 gi|1781169|emb|CAB06105.1| POSSIBLE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1533
           [Mycobacterium tuberculosis H37Rv]
 gi|148506943|gb|ABQ74752.1| ISMt3 transposase B2 [Mycobacterium tuberculosis H37Ra]
 gi|148722660|gb|ABR07285.1| transposase [Mycobacterium tuberculosis F11]
 gi|289417422|gb|EFD14662.1| transposase [Mycobacterium tuberculosis T46]
 gi|289421569|gb|EFD18770.1| transposase [Mycobacterium tuberculosis CPHL_A]
 gi|289437898|gb|EFD20391.1| transposase [Mycobacterium tuberculosis KZN 605]
 gi|289540081|gb|EFD44659.1| transposase [Mycobacterium tuberculosis K85]
 gi|289544891|gb|EFD48539.1| transposase [Mycobacterium tuberculosis T17]
 gi|289687272|gb|EFD54760.1| transposase [Mycobacterium tuberculosis 02_1987]
 gi|289695646|gb|EFD63075.1| transposase [Mycobacterium tuberculosis EAS054]
 gi|289714632|gb|EFD78644.1| transposase [Mycobacterium tuberculosis T85]
 gi|326904559|gb|EGE51492.1| transposase [Mycobacterium tuberculosis W-148]
 gi|328457742|gb|AEB03165.1| transposase [Mycobacterium tuberculosis KZN 4207]
          Length = 238

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 29/131 (22%)

Query: 47  SAIEQAVRLIDSWPSW----PSRVVILVGPSGSGKSCLA---NIWSDKSRSTRFSNIAKS 99
           ++      +   W  W    P+       P G+GK+ LA    I + ++        A  
Sbjct: 63  ASNATPSHI---WAPWISSPPAITSCFWAPPGTGKTHLAVGLAIRACQAGHRVLFATAAE 119

Query: 100 LDSILIDTRKP---------------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLL 141
             + L +                   ++++++  + F        F ++ S     +SL+
Sbjct: 120 WVARLAEAHHAGRIYAELTRLCRYPLLVVDEVGYIPFEPEAANLFFQLV-SSRYERASLI 178

Query: 142 MTARTFPVSWG 152
           +T+      WG
Sbjct: 179 VTSNKAFGRWG 189


>gi|16763830|ref|NP_459445.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|56414395|ref|YP_151470.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62179061|ref|YP_215478.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161615357|ref|YP_001589321.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167990433|ref|ZP_02571533.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231438|ref|ZP_02656496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237564|ref|ZP_02662622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168261114|ref|ZP_02683087.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465543|ref|ZP_02699425.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168818939|ref|ZP_02830939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194445635|ref|YP_002039692.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194451482|ref|YP_002044484.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194471272|ref|ZP_03077256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734820|ref|YP_002113480.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197250772|ref|YP_002145430.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197263118|ref|ZP_03163192.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197363315|ref|YP_002142952.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198242558|ref|YP_002214403.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390026|ref|ZP_03216637.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205351760|ref|YP_002225561.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|224582287|ref|YP_002636085.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238911420|ref|ZP_04655257.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|21263472|sp|Q8ZRC0|CLPX_SALTY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81309773|sp|Q57SB4|CLPX_SALCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|81360133|sp|Q5PFN5|CLPX_SALPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044148|sp|A9MWX5|CLPX_SALPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689941|sp|B5BD82|CLPX_SALPK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690000|sp|B5EXI9|CLPX_SALA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690231|sp|B4T9E4|CLPX_SALHS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690324|sp|B5FKV4|CLPX_SALDC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690478|sp|B5R6V0|CLPX_SALG2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238690697|sp|B4TMC7|CLPX_SALSV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238693543|sp|B4SWU2|CLPX_SALNS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763861|sp|C0Q7X4|CLPX_SALPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|16418956|gb|AAL19404.1| specificity component of clpA-clpP ATP-dependent serine protease,
           chaperone [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56128652|gb|AAV78158.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62126694|gb|AAX64397.1| specificity component of clpA-clpP ATP-dependent serine protease,
           chaperone [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161364721|gb|ABX68489.1| hypothetical protein SPAB_03128 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404298|gb|ACF64520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409786|gb|ACF70005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194457636|gb|EDX46475.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710322|gb|ACF89543.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631578|gb|EDX50098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094792|emb|CAR60325.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214475|gb|ACH51872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197241373|gb|EDY23993.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289504|gb|EDY28867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197937074|gb|ACH74407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199602471|gb|EDZ01017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205271541|emb|CAR36359.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205330906|gb|EDZ17670.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205333989|gb|EDZ20753.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205344101|gb|EDZ30865.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349962|gb|EDZ36593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224466814|gb|ACN44644.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261245732|emb|CBG23529.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267992165|gb|ACY87050.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157060|emb|CBW16544.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911482|dbj|BAJ35456.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084723|emb|CBY94514.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321226027|gb|EFX51078.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322614727|gb|EFY11656.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618833|gb|EFY15721.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623540|gb|EFY20379.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629161|gb|EFY25940.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631882|gb|EFY28636.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637381|gb|EFY34083.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642066|gb|EFY38676.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647885|gb|EFY44360.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652563|gb|EFY48917.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322653275|gb|EFY49608.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660576|gb|EFY56812.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664728|gb|EFY60921.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669219|gb|EFY65369.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670764|gb|EFY66897.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678997|gb|EFY75052.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682026|gb|EFY78051.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685145|gb|EFY81142.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322713522|gb|EFZ05093.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323128769|gb|ADX16199.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192961|gb|EFZ78184.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196957|gb|EFZ82099.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203942|gb|EFZ88959.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323206973|gb|EFZ91926.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323214176|gb|EFZ98934.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214500|gb|EFZ99251.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223057|gb|EGA07400.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227006|gb|EGA11187.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230176|gb|EGA14296.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233914|gb|EGA18003.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238392|gb|EGA22450.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244079|gb|EGA28088.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246240|gb|EGA30223.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251866|gb|EGA35729.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323257863|gb|EGA41542.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261124|gb|EGA44716.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264946|gb|EGA48445.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323272509|gb|EGA55916.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326622152|gb|EGE28497.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326626795|gb|EGE33138.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987398|gb|AEF06381.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 423

 Score = 38.2 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRTHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|319651694|ref|ZP_08005821.1| Holliday junction DNA helicase B [Bacillus sp. 2_A_57_CT2]
 gi|317396761|gb|EFV77472.1| Holliday junction DNA helicase B [Bacillus sp. 2_A_57_CT2]
          Length = 333

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ LA I +++      +    +++           LE  D+L  ++ 
Sbjct: 56  VLLYGPPGLGKTTLAAIIANEMGVNIRTTAGPAIERPGDLAAILTALEPGDVLFIDEI 113


>gi|307716535|gb|ADN88327.1| replicase [Porcine circovirus 2]
          Length = 314

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  ++D+  +       K  D       + V+++D    
Sbjct: 163 RDWKTNVHVIVGPPGCGKSKWAANFADRETTYWKPPRNKWWDG--YHGEEVVVIDDFYGW 220

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P+ W
Sbjct: 221 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEW 262


>gi|307175717|gb|EFN65582.1| 26S protease regulatory subunit 8 [Camponotus floridanus]
          Length = 694

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 232


>gi|301330695|ref|ZP_07223297.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 78-1]
 gi|300843356|gb|EFK71116.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 78-1]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|242091515|ref|XP_002441590.1| hypothetical protein SORBIDRAFT_09g029900 [Sorghum bicolor]
 gi|241946875|gb|EES20020.1| hypothetical protein SORBIDRAFT_09g029900 [Sorghum bicolor]
          Length = 842

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++ + ++  +
Sbjct: 526 PCRGILLFGPPGTGKTMLAKAIANDAGASFIN 557


>gi|227356380|ref|ZP_03840768.1| peptide-transporting ATPase [Proteus mirabilis ATCC 29906]
 gi|227163490|gb|EEI48411.1| peptide-transporting ATPase [Proteus mirabilis ATCC 29906]
          Length = 690

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128
           +VG SGSGKS LA I +              LD I +    P +L         +  LFH
Sbjct: 484 IVGTSGSGKSTLARIIA---GLYIPQLGQVKLDGIPVCEIPPAVLRQQIGFVLQENFLFH 540

Query: 129 I 129
           +
Sbjct: 541 L 541


>gi|225711196|gb|ACO11444.1| 26S protease regulatory subunit 7 [Caligus rogercresseyi]
          Length = 435

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRE 261


>gi|254169220|ref|ZP_04876054.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289596750|ref|YP_003483446.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|197621816|gb|EDY34397.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
 gi|289534537|gb|ADD08884.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
          Length = 738

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            S+ ++L GP G+GK+ LA   + +S +   S
Sbjct: 498 ASKGILLYGPPGTGKTLLAKAVATESEANFIS 529



 Score = 37.4 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ +A   +++S +  ++
Sbjct: 221 PPKGVLLYGPPGTGKTLIAKAVANESNAHFYA 252


>gi|170767649|ref|ZP_02902102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           albertii TW07627]
 gi|170123137|gb|EDS92068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           albertii TW07627]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|168183449|ref|ZP_02618113.1| ABC transporter, ATP-binding protein [Clostridium botulinum Bf]
 gi|237794081|ref|YP_002861633.1| ABC transporter ATP-binding protein [Clostridium botulinum Ba4 str.
           657]
 gi|182673555|gb|EDT85516.1| ABC transporter, ATP-binding protein [Clostridium botulinum Bf]
 gi|229261079|gb|ACQ52112.1| ABC transporter, ATP-binding protein [Clostridium botulinum Ba4
           str. 657]
          Length = 230

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 36/106 (33%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V +VGPSGSGKS L ++                L  +   T   V+LE  D+    + +
Sbjct: 35  FVAIVGPSGSGKSTLLHL----------------LGGVDKPTSGKVVLEGTDIYSLKENE 78

Query: 126 L-----------FHIINSIHQYDSSLLMTAR---TFPVSWGVCLPD 157
           L           F   N I       ++TA      PV      PD
Sbjct: 79  LAILRRRKIGFIFQFYNLIP------VLTAEENMEMPVLLDNKKPD 118


>gi|168178179|ref|ZP_02612843.1| ABC transporter, ATP-binding protein [Clostridium botulinum NCTC
           2916]
 gi|182670577|gb|EDT82551.1| ABC transporter, ATP-binding protein [Clostridium botulinum NCTC
           2916]
          Length = 230

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 36/106 (33%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V +VGPSGSGKS L ++                L  +   T   V+LE  D+    + +
Sbjct: 35  FVAIVGPSGSGKSTLLHL----------------LGGVDKPTSGKVVLEGTDIYSLKENE 78

Query: 126 L-----------FHIINSIHQYDSSLLMTAR---TFPVSWGVCLPD 157
           L           F   N I       ++TA      PV      PD
Sbjct: 79  LAILRRRKIGFIFQFYNLIP------VLTAEENMEMPVLLDNKKPD 118


>gi|241666946|ref|YP_002985030.1| AAA family ATPase, CDC48 subfamily [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862403|gb|ACS60068.1| AAA family ATPase, CDC48 subfamily [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 704

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   ++++ +  F 
Sbjct: 184 PPKGVLLYGPPGTGKTLLARAVANETEANFFH 215



 Score = 36.3 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P++  +L GP G+GK+ LA   + ++ +   +  +  L
Sbjct: 456 PAKGFLLFGPPGTGKTLLAKAVAREAEANFVATKSSDL 493


>gi|148372287|gb|ABQ63066.1| replicase [Porcine circovirus 2]
          Length = 314

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  ++D+  +       K  D       + V+++D    
Sbjct: 163 RDWKTNVHVIVGPPGCGKSKWAANFADRETTYWKPPRNKWWDG--YHGEEVVVIDDFYGW 220

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P+ W
Sbjct: 221 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEW 262


>gi|82701313|ref|YP_410879.1| recombination factor protein RarA [Nitrosospira multiformis ATCC
           25196]
 gi|82409378|gb|ABB73487.1| Recombination protein MgsA [Nitrosospira multiformis ATCC 25196]
          Length = 437

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 66/198 (33%), Gaps = 30/198 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKP---------VL 112
           +IL GP GSGK+ LA + +    +   +        K +   +   R           + 
Sbjct: 51  MILWGPPGSGKTTLARLMASAFDAEFIALSAVLAGVKDIRDAIERARAVLHQSSRHTILF 110

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAATV 167
           ++++   + +    F       +      + A T   S+ V    L SR     L A + 
Sbjct: 111 VDEVHRFNKSQQDAFLPF---VEQGLVTFIGATTENPSFEVNGA-LLSRAQVYVLTALST 166

Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
            ++    D   +  + +      +       + +++  +        L++++   A + G
Sbjct: 167 TELGTLFDRARKLALAE------LDFTPDARSLLIEYADGDARRLLNLLEQLKTAAAAEG 220

Query: 228 -MGITRSLAAEVLKETQQ 244
              I    A E L    +
Sbjct: 221 ISRIDADYARERLSRAAR 238


>gi|116672523|ref|YP_833456.1| ATPase central domain-containing protein [Arthrobacter sp. FB24]
 gi|116612632|gb|ABK05356.1| AAA ATPase, central domain protein [Arthrobacter sp. FB24]
          Length = 471

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 38/174 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNIAKSLDSILID----T 107
           P R V+L GP G+GK+  A   + +             +     +A +L    ++     
Sbjct: 227 PPRAVVLFGPPGTGKTTFAKAIASRLEWPFVEVFPSRLAADPKGLAGALRETFLEIAELE 286

Query: 108 RKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
              V +++++ +                 +L  II +  +    LL+ A  F  +     
Sbjct: 287 HAVVFIDEVEEIASQRSGEPPSPLQGVTNELLKIIPAFREQPGRLLVCATNFIRALDTAF 346

Query: 156 PDLCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
                 L+      V+ I LPD    E +  +        +D      +V R E
Sbjct: 347 ------LRHGRFDYVIPIGLPDRQAREAMWQRFIPA--TVVDDVDVELLVDRTE 392


>gi|332024993|gb|EGI65180.1| ATP-binding cassette sub-family G member 4 [Acromyrmex
          echinatior]
          Length = 1144

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89
          P +V ++VGPSGSGK+ L  I S K +
Sbjct: 71 PGKVTVIVGPSGSGKTTLLKIISGKQQ 97


>gi|307297687|ref|ZP_07577493.1| ATP-dependent metalloprotease FtsH [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916947|gb|EFN47329.1| ATP-dependent metalloprotease FtsH [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 633

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 61/200 (30%), Gaps = 49/200 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           ++LVGP G+GK+ LA   + ++    F         + +                     
Sbjct: 198 LLLVGPPGTGKTLLARAVAGEAGVPFFFISGSDFVELFVGVGAARVRDLFTQAKSSAPSI 257

Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGV 153
           + +++ID +            ++ +    +N I             +++ A   P     
Sbjct: 258 LFIDEIDAVGRHRGAGLGGGHDERE--QTLNQILVEMDGFDAKTGVIVIAATNRPDILDK 315

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209
            L      L+       + +  PD     +  +     R   ID ++    + +R    +
Sbjct: 316 AL------LRPGRFDKKISVDPPD--LKGRSEILKIHMRGKPIDPEVDVQLLARRTPGFV 367

Query: 210 VFAEKLVDKMDNLALSRGMG 229
                L + ++  A+     
Sbjct: 368 GA--DLENLINEAAILSARK 385


>gi|302782403|ref|XP_002972975.1| hypothetical protein SELMODRAFT_98591 [Selaginella moellendorffii]
 gi|300159576|gb|EFJ26196.1| hypothetical protein SELMODRAFT_98591 [Selaginella moellendorffii]
          Length = 894

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 17/82 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P   V+L GP G GK+ LA   + ++    +         +L+                 
Sbjct: 395 PPHGVLLEGPPGCGKTLLAKAVAGEAGVPFYQMAGSEFVEVLVGVGAARMRDLFLRAKVN 454

Query: 111 ----VLLEDIDLLDFNDTQLFH 128
               V +++ID L    ++ FH
Sbjct: 455 RPAVVFIDEIDALGGARSE-FH 475


>gi|297795319|ref|XP_002865544.1| hypothetical protein ARALYDRAFT_494803 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311379|gb|EFH41803.1| hypothetical protein ARALYDRAFT_494803 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 701

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 284 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 330


>gi|290580862|ref|YP_003485254.1| putative ABC transporter ATP-binding protein [Streptococcus
          mutans NN2025]
 gi|254997761|dbj|BAH88362.1| putative ABC transporter ATP-binding protein [Streptococcus
          mutans NN2025]
          Length = 249

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90
          P   + LVGPSGSGK+ L  I +   ++
Sbjct: 36 PGEFISLVGPSGSGKTTLLRIIAGLEKA 63


>gi|224070736|ref|XP_002186835.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 751

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           +V +L GP G GK+ LA++ +  +        A+++   L       +L
Sbjct: 667 KVALLCGPPGLGKTTLAHVIARHAGYNAVEMNARAIPPSLFPQASINVL 715



 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKP 110
           +V +L GP G GK+ LA++ +  +   +   +    ++  +++    P
Sbjct: 300 KVALLCGPPGLGKTTLAHVIARHAGYNAVEMNARGDAVPGVVLAVSPP 347


>gi|221116017|ref|XP_002168405.1| PREDICTED: similar to 26S protease regulatory subunit 8, partial
           [Hydra magnipapillata]
          Length = 294

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 72  VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 119


>gi|206579207|ref|YP_002240082.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           pneumoniae 342]
 gi|288936833|ref|YP_003440892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Klebsiella
           variicola At-22]
 gi|290510111|ref|ZP_06549481.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. 1_1_55]
 gi|238066657|sp|B5Y0U1|CLPX_KLEP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|206568265|gb|ACI10041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           pneumoniae 342]
 gi|288891542|gb|ADC59860.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           variicola At-22]
 gi|289776827|gb|EFD84825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. 1_1_55]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|155212615|gb|ABT17374.1| bacteriorhodopsin-associated chaperone [uncultured haloarchaeon
           FLAS10H9]
          Length = 732

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%)

Query: 54  RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
             +D     P   V+L GP G+GK+ LA   +  + +   +     L    +   +  + 
Sbjct: 492 AALDRLRIDPPAGVLLYGPPGTGKTLLARAIASTTEANFIAVDGPELFDKFVGESERAVR 551

Query: 114 E 114
           E
Sbjct: 552 E 552


>gi|121715774|ref|XP_001275496.1| midasin, putative [Aspergillus clavatus NRRL 1]
 gi|119403653|gb|EAW14070.1| midasin, putative [Aspergillus clavatus NRRL 1]
          Length = 4925

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 22/111 (19%)

Query: 7    DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66
             +     D      P++    L    P    +                ++    SWPS  
Sbjct: 2008 GFGVMRRDSIVQQTPESHMRILPGDLPILESL----------------MLCIEQSWPS-- 2049

Query: 67   VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
             ILVGPSG GK+ L    +  + +     +A S D+  +D       E ID
Sbjct: 2050 -ILVGPSGCGKTTLIRKLAALNGTELIE-LALSADTDTMDLIGGF--EQID 2096


>gi|157368606|ref|YP_001476595.1| transposase/IS protein [Serratia proteamaculans 568]
 gi|157320370|gb|ABV39467.1| IstB domain protein ATP-binding protein [Serratia proteamaculans
           568]
          Length = 262

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 39/142 (27%)

Query: 67  VILVGPSGSGKSCLANIWSDK----SRSTRFSNIAKSLDSILIDTR-------------- 108
           ++L+GPSG GKS LA   + K     +S RF   A  +  ++   R              
Sbjct: 104 IVLLGPSGVGKSHLACALAHKVAMSGQSVRFITAADMMLQLVAAHRQGELKGYLGRCVNK 163

Query: 109 -KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
            + ++++++  L F   +    F ++   ++   SL++T+      W     D       
Sbjct: 164 PRLLVIDEVGYLPFGKEEANLFFQVVARRYETG-SLILTSNLPFTQWSGTFGD------- 215

Query: 165 ATVVKISLPDDDFLEKVIVKMF 186
                    D+     ++ ++ 
Sbjct: 216 ---------DETLTAAMLDRLL 228


>gi|115374008|ref|ZP_01461298.1| hypothetical protein STIAU_3377 [Stigmatella aurantiaca DW4/3-1]
 gi|310825258|ref|YP_003957616.1| hypothetical protein STAUR_8034 [Stigmatella aurantiaca DW4/3-1]
 gi|115369015|gb|EAU67960.1| hypothetical protein STIAU_3377 [Stigmatella aurantiaca DW4/3-1]
 gi|309398330|gb|ADO75789.1| conserved uncharacterized protein [Stigmatella aurantiaca
          DW4/3-1]
          Length = 1072

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 39 SRDDLLVHSAIEQAVR----LID--SWPSWPS--RVVILVGPSGSGKSCLANIWSDKSRS 90
            D   V +    A R    L+D  S P  P   R+++L G SGSGK+ L   + +    
Sbjct: 29 HPDPFDVETLNAPARRVFKRLVDQVSVPPGPGAGRLLLLRGDSGSGKTHLVRAFRNLVHG 88


>gi|30698050|ref|NP_201263.2| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|332010540|gb|AED97923.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 855

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 35  CLGISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVI------LVGPSGSGKSCLANIW 84
             G++ DD      +   +++ VR++ +   + ++ +       L GP G+GK+ LA   
Sbjct: 310 KTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAI 369

Query: 85  SDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           + ++    F+        + +      + +
Sbjct: 370 AGEAGLPFFAANGTDFVEMFVGVAASRVKD 399


>gi|42523161|ref|NP_968541.1| phosphate transport system ATP-binding protein [Bdellovibrio
           bacteriovorus HD100]
 gi|67471649|sp|Q6MMH0|PSTB_BDEBA RecName: Full=Phosphate import ATP-binding protein PstB; AltName:
           Full=ABC phosphate transporter; AltName:
           Full=Phosphate-transporting ATPase
 gi|39575366|emb|CAE79534.1| phosphate transport system ATP-binding protein [Bdellovibrio
           bacteriovorus HD100]
          Length = 255

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118
           +RV  L+GPSG GK+ L   ++       ++N     + +L   +  +L +DID 
Sbjct: 32  NRVTALIGPSGCGKTTLLRCFNRMHD--LYANAQYQGEILLYPNQSNILGKDIDP 84


>gi|7594817|dbj|BAA94669.1| ATPase subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRTHLDDYVIGQEQAKKVLAXAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|15800168|ref|NP_286180.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 EDL933]
 gi|15829746|ref|NP_308519.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128423|ref|NP_414972.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. MG1655]
 gi|24111822|ref|NP_706332.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri
           2a str. 301]
 gi|26246449|ref|NP_752488.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           CFT073]
 gi|30061940|ref|NP_836111.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri
           2a str. 2457T]
 gi|74311013|ref|YP_309432.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella sonnei
           Ss046]
 gi|82775655|ref|YP_402002.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella
           dysenteriae Sd197]
 gi|89107308|ref|AP_001088.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. W3110]
 gi|91209512|ref|YP_539498.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           UTI89]
 gi|110640699|ref|YP_668427.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           536]
 gi|110804466|ref|YP_687986.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri
           5 str. 8401]
 gi|117622698|ref|YP_851611.1| ATP-dependent protease ATP-binding subunit [Escherichia coli APEC
           O1]
 gi|157157655|ref|YP_001461625.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           E24377A]
 gi|157159965|ref|YP_001457283.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           HS]
 gi|168754543|ref|ZP_02779550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4401]
 gi|168768393|ref|ZP_02793400.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4486]
 gi|168778931|ref|ZP_02803938.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4076]
 gi|168786289|ref|ZP_02811296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC869]
 gi|170021189|ref|YP_001726143.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           ATCC 8739]
 gi|170080024|ref|YP_001729344.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. DH10B]
 gi|170682782|ref|YP_001742582.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           SMS-3-5]
 gi|187730793|ref|YP_001879149.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella boydii
           CDC 3083-94]
 gi|188492973|ref|ZP_03000243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 53638]
 gi|193064164|ref|ZP_03045248.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E22]
 gi|208807403|ref|ZP_03249740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4206]
 gi|208814875|ref|ZP_03256054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4045]
 gi|208822907|ref|ZP_03263225.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398902|ref|YP_002269085.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4115]
 gi|209917655|ref|YP_002291739.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           SE11]
 gi|215485519|ref|YP_002327950.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217325849|ref|ZP_03441933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. TW14588]
 gi|218553005|ref|YP_002385918.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           IAI1]
 gi|218557348|ref|YP_002390261.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           S88]
 gi|218688302|ref|YP_002396514.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           ED1a]
 gi|218693901|ref|YP_002401568.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           55989]
 gi|218698650|ref|YP_002406279.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           IAI39]
 gi|218703722|ref|YP_002411241.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           UMN026]
 gi|227884551|ref|ZP_04002356.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972]
 gi|237707567|ref|ZP_04538048.1| ATP-dependent protease ATP-binding subunit [Escherichia sp.
           3_2_53FAA]
 gi|238899726|ref|YP_002925522.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli BW2952]
 gi|253774573|ref|YP_003037404.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160507|ref|YP_003043615.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli B
           str. REL606]
 gi|254791622|ref|YP_003076459.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. TW14359]
 gi|256020410|ref|ZP_05434275.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella sp. D9]
 gi|256023943|ref|ZP_05437808.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia sp.
           4_1_40B]
 gi|260842639|ref|YP_003220417.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O103:H2 str. 12009]
 gi|260853661|ref|YP_003227552.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O26:H11 str. 11368]
 gi|260866599|ref|YP_003233001.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O111:H- str. 11128]
 gi|261223921|ref|ZP_05938202.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256365|ref|ZP_05948898.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O157:H7 str. FRIK966]
 gi|291281345|ref|YP_003498163.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli O55:H7 str. CB9615]
 gi|293403559|ref|ZP_06647650.1| ClpX [Escherichia coli FVEC1412]
 gi|293408588|ref|ZP_06652427.1| ATP-dependent Clp protease [Escherichia coli B354]
 gi|293413693|ref|ZP_06656342.1| ATP-dependent Clp protease [Escherichia coli B185]
 gi|293418509|ref|ZP_06660944.1| ATP-dependent Clp protease [Escherichia coli B088]
 gi|298379171|ref|ZP_06989052.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli FVEC1302]
 gi|300818230|ref|ZP_07098441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 107-1]
 gi|300820316|ref|ZP_07100468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 119-7]
 gi|300900509|ref|ZP_07118676.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 198-1]
 gi|300903294|ref|ZP_07121222.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 84-1]
 gi|300918179|ref|ZP_07134786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 115-1]
 gi|300924165|ref|ZP_07140157.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 182-1]
 gi|300937055|ref|ZP_07151921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 21-1]
 gi|300947909|ref|ZP_07162057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 116-1]
 gi|300958006|ref|ZP_07170170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 175-1]
 gi|300988007|ref|ZP_07178487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 45-1]
 gi|300997373|ref|ZP_07181713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 200-1]
 gi|301022568|ref|ZP_07186440.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 69-1]
 gi|301025666|ref|ZP_07189184.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 196-1]
 gi|301301589|ref|ZP_07207724.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 124-1]
 gi|301647364|ref|ZP_07247176.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 146-1]
 gi|306813094|ref|ZP_07447287.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           NC101]
 gi|307137083|ref|ZP_07496439.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           H736]
 gi|307312184|ref|ZP_07591820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli W]
 gi|309787030|ref|ZP_07681642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           dysenteriae 1617]
 gi|309794829|ref|ZP_07689250.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 145-7]
 gi|312964537|ref|ZP_07778793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 2362-75]
 gi|312970534|ref|ZP_07784715.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1827-70]
 gi|331640958|ref|ZP_08342093.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H736]
 gi|331645614|ref|ZP_08346718.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M605]
 gi|331651376|ref|ZP_08352401.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M718]
 gi|331656495|ref|ZP_08357457.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA206]
 gi|331661819|ref|ZP_08362742.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA143]
 gi|331666793|ref|ZP_08367667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA271]
 gi|331671985|ref|ZP_08372781.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA280]
 gi|331676110|ref|ZP_08376822.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H591]
 gi|331681833|ref|ZP_08382466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H299]
 gi|332281589|ref|ZP_08394002.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Shigella sp. D9]
 gi|62288037|sp|P0A6H1|CLPX_ECOLI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|62288038|sp|P0A6H2|CLPX_ECOL6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|62288039|sp|P0A6H3|CLPX_ECO57 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|62288040|sp|P0A6H4|CLPX_SHIFL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122424751|sp|Q1RF97|CLPX_ECOUT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|122957619|sp|Q0T7E5|CLPX_SHIF8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123049431|sp|Q0TKK3|CLPX_ECOL5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123563420|sp|Q32JJ4|CLPX_SHIDS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|123617887|sp|Q3Z4W5|CLPX_SHISS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|166214775|sp|A1A8A7|CLPX_ECOK1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167009013|sp|A7ZIJ6|CLPX_ECO24 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|167009014|sp|A7ZX96|CLPX_ECOHS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|189044134|sp|B1J010|CLPX_ECOLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706586|sp|B7MD97|CLPX_ECO45 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706587|sp|B7NJ56|CLPX_ECO7I RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706588|sp|B7M3T1|CLPX_ECO8A RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706589|sp|B7N8Z2|CLPX_ECOLU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|226706590|sp|B1LJJ5|CLPX_ECOSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|229889854|sp|B1XFM6|CLPX_ECODH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238066655|sp|B5Z3U5|CLPX_ECO5E RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238066656|sp|B6HZP5|CLPX_ECOSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|238689516|sp|B2U4P3|CLPX_SHIB3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763846|sp|B7UJR1|CLPX_ECO27 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763847|sp|B7L675|CLPX_ECO55 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763848|sp|B7MQF4|CLPX_ECO81 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|259491256|sp|C4ZTJ5|CLPX_ECOBW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|12513300|gb|AAG54788.1|AE005223_3 ATP-dependent specificity component of clpP serine protease,
           chaperone [Escherichia coli O157:H7 str. EDL933]
 gi|26106847|gb|AAN79032.1|AE016756_215 ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli CFT073]
 gi|347729|gb|AAA16116.1| ATP-dependent protease ATPase subunit [Escherichia coli]
 gi|1773122|gb|AAB40194.1| ATP-dependent Clp proteinase [Escherichia coli]
 gi|1786642|gb|AAC73541.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. MG1655]
 gi|13359949|dbj|BAB33915.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli O157:H7 str. Sakai]
 gi|24050613|gb|AAN42039.1| ATP-dependent specificity component of clpP serine protease
           [Shigella flexneri 2a str. 301]
 gi|30040184|gb|AAP15917.1| ATP-dependent specificity component of clpP serine protease
           [Shigella flexneri 2a str. 2457T]
 gi|73854490|gb|AAZ87197.1| ATP-dependent specificity component of clpP serine protease,
           chaperone [Shigella sonnei Ss046]
 gi|81239803|gb|ABB60513.1| ATP-dependent specificity component of clpP serine protease
           [Shigella dysenteriae Sd197]
 gi|85674578|dbj|BAE76218.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K12 substr. W3110]
 gi|91071086|gb|ABE05967.1| ATP-dependent specificity component of ClpP serine protease,
           chaperone [Escherichia coli UTI89]
 gi|110342291|gb|ABG68528.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli 536]
 gi|110614014|gb|ABF02681.1| ATP-dependent protease ATP-binding subunit protease [Shigella
           flexneri 5 str. 8401]
 gi|115511822|gb|ABI99896.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli APEC O1]
 gi|157065645|gb|ABV04900.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli HS]
 gi|157079685|gb|ABV19393.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E24377A]
 gi|169756117|gb|ACA78816.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli ATCC 8739]
 gi|169887859|gb|ACB01566.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli str. K-12 substr. DH10B]
 gi|170520500|gb|ACB18678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli SMS-3-5]
 gi|187427785|gb|ACD07059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           boydii CDC 3083-94]
 gi|188488172|gb|EDU63275.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 53638]
 gi|189002703|gb|EDU71689.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357986|gb|EDU76405.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362383|gb|EDU80802.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4486]
 gi|189373571|gb|EDU91987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC869]
 gi|192929193|gb|EDV82803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E22]
 gi|208727204|gb|EDZ76805.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4206]
 gi|208731523|gb|EDZ80211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4045]
 gi|208737100|gb|EDZ84784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4042]
 gi|209160302|gb|ACI37735.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC4115]
 gi|209743844|gb|ACI70229.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743846|gb|ACI70230.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743848|gb|ACI70231.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743850|gb|ACI70232.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209743852|gb|ACI70233.1| ATP-dependent specificity component of clpP serine protease ClpX
           [Escherichia coli]
 gi|209910914|dbj|BAG75988.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           SE11]
 gi|215263591|emb|CAS07921.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O127:H6 str. E2348/69]
 gi|217322070|gb|EEC30494.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. TW14588]
 gi|218350633|emb|CAU96325.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli 55989]
 gi|218359773|emb|CAQ97314.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli IAI1]
 gi|218364117|emb|CAR01782.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli S88]
 gi|218368636|emb|CAR16375.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli IAI39]
 gi|218425866|emb|CAR06672.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli ED1a]
 gi|218430819|emb|CAR11693.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli UMN026]
 gi|222032233|emb|CAP74972.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli LF82]
 gi|226898777|gb|EEH85036.1| ATP-dependent protease ATP-binding subunit [Escherichia sp.
           3_2_53FAA]
 gi|227838637|gb|EEJ49103.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972]
 gi|238860036|gb|ACR62034.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli BW2952]
 gi|242376219|emb|CAQ30910.1| clpX, subunit of ClpX ATP-dependent protease specificity component
           and chaperone, ClpXP and ClpAXP [Escherichia coli
           BL21(DE3)]
 gi|253325617|gb|ACT30219.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972408|gb|ACT38079.1| ATP-dependent protease ATP-binding subunit [Escherichia coli B str.
           REL606]
 gi|253976618|gb|ACT42288.1| ATP-dependent protease ATP-binding subunit [Escherichia coli
           BL21(DE3)]
 gi|254591022|gb|ACT70383.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O157:H7 str. TW14359]
 gi|257752310|dbj|BAI23812.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O26:H11 str. 11368]
 gi|257757786|dbj|BAI29283.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O103:H2 str. 12009]
 gi|257762955|dbj|BAI34450.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli O111:H- str. 11128]
 gi|260450375|gb|ACX40797.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli DH1]
 gi|281599778|gb|ADA72762.1| ATP-dependent Clp protease ATP-binding subunit clpX [Shigella
           flexneri 2002017]
 gi|284920248|emb|CBG33307.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           042]
 gi|290761218|gb|ADD55179.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia
           coli O55:H7 str. CB9615]
 gi|291325037|gb|EFE64452.1| ATP-dependent Clp protease [Escherichia coli B088]
 gi|291429412|gb|EFF02432.1| ClpX [Escherichia coli FVEC1412]
 gi|291433751|gb|EFF06724.1| ATP-dependent Clp protease [Escherichia coli B185]
 gi|291464929|gb|ADE05991.1| ATP-dependent protease ClpX [Escherichia coli]
 gi|291471766|gb|EFF14249.1| ATP-dependent Clp protease [Escherichia coli B354]
 gi|294493190|gb|ADE91946.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli IHE3034]
 gi|298280284|gb|EFI21788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli FVEC1302]
 gi|299880020|gb|EFI88231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 196-1]
 gi|300304192|gb|EFJ58712.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 200-1]
 gi|300315273|gb|EFJ65057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 175-1]
 gi|300355990|gb|EFJ71860.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 198-1]
 gi|300397449|gb|EFJ80987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 69-1]
 gi|300404589|gb|EFJ88127.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 84-1]
 gi|300407559|gb|EFJ91097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 45-1]
 gi|300414630|gb|EFJ97940.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 115-1]
 gi|300419618|gb|EFK02929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 182-1]
 gi|300452509|gb|EFK16129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 116-1]
 gi|300457886|gb|EFK21379.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 21-1]
 gi|300527101|gb|EFK48170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 119-7]
 gi|300529121|gb|EFK50183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 107-1]
 gi|300843086|gb|EFK70846.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 124-1]
 gi|301074509|gb|EFK89315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 146-1]
 gi|305853857|gb|EFM54296.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           NC101]
 gi|306907686|gb|EFN38188.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli W]
 gi|307552345|gb|ADN45120.1| ATP-dependent specificity component of ClpP serine protease
           [Escherichia coli ABU 83972]
 gi|307628092|gb|ADN72396.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           UM146]
 gi|308121482|gb|EFO58744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 145-7]
 gi|308924608|gb|EFP70103.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           dysenteriae 1617]
 gi|309700699|emb|CBI99995.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           ETEC H10407]
 gi|310337183|gb|EFQ02321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1827-70]
 gi|312290771|gb|EFR18648.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 2362-75]
 gi|312945016|gb|ADR25843.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313646935|gb|EFS11392.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 2a str. 2457T]
 gi|315059718|gb|ADT74045.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Escherichia coli W]
 gi|315135120|dbj|BAJ42279.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli DH1]
 gi|315256266|gb|EFU36234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 85-1]
 gi|315289844|gb|EFU49234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 110-3]
 gi|315294228|gb|EFU53579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 153-1]
 gi|315299562|gb|EFU58810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 16-3]
 gi|315616621|gb|EFU97238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 3431]
 gi|320186068|gb|EFW60813.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella
           flexneri CDC 796-83]
 gi|320192854|gb|EFW67494.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. EC1212]
 gi|320197088|gb|EFW71707.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli WV_060327]
 gi|320201682|gb|EFW76258.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli EC4100B]
 gi|320638433|gb|EFX08147.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. G5101]
 gi|320643814|gb|EFX12937.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H- str. 493-89]
 gi|320649165|gb|EFX17743.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H- str. H 2687]
 gi|320656058|gb|EFX23974.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661208|gb|EFX28639.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665184|gb|EFX32277.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323153475|gb|EFZ39729.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli EPECa14]
 gi|323160451|gb|EFZ46399.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli E128010]
 gi|323164239|gb|EFZ50046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           sonnei 53G]
 gi|323170524|gb|EFZ56174.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli LT-68]
 gi|323178293|gb|EFZ63871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1180]
 gi|323184731|gb|EFZ70102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli 1357]
 gi|323191358|gb|EFZ76621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli RN587/1]
 gi|323379717|gb|ADX51985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli KO11]
 gi|323938624|gb|EGB34873.1| ATP-dependent Clp protease [Escherichia coli E1520]
 gi|323943245|gb|EGB39401.1| ATP-dependent Clp protease [Escherichia coli E482]
 gi|323945343|gb|EGB41399.1| ATP-dependent Clp protease [Escherichia coli H120]
 gi|323952950|gb|EGB48818.1| ATP-dependent Clp protease [Escherichia coli H252]
 gi|323958631|gb|EGB54334.1| ATP-dependent Clp protease [Escherichia coli H263]
 gi|323963428|gb|EGB58990.1| ATP-dependent Clp protease [Escherichia coli H489]
 gi|323965125|gb|EGB60584.1| ATP-dependent Clp protease [Escherichia coli M863]
 gi|323972292|gb|EGB67502.1| ATP-dependent Clp protease [Escherichia coli TA007]
 gi|323976077|gb|EGB71170.1| ATP-dependent Clp protease [Escherichia coli TW10509]
 gi|324010069|gb|EGB79288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 57-2]
 gi|324010652|gb|EGB79871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 60-1]
 gi|324016701|gb|EGB85920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli MS 117-3]
 gi|324116926|gb|EGC10839.1| ATP-dependent Clp protease [Escherichia coli E1167]
 gi|326341202|gb|EGD64994.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. 1044]
 gi|326346023|gb|EGD69762.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli O157:H7 str. 1125]
 gi|327254766|gb|EGE66382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli STEC_7v]
 gi|330910232|gb|EGH38742.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia
           coli AA86]
 gi|331037756|gb|EGI09976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H736]
 gi|331045776|gb|EGI17902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M605]
 gi|331051117|gb|EGI23169.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli M718]
 gi|331054743|gb|EGI26752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA206]
 gi|331060241|gb|EGI32205.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA143]
 gi|331066017|gb|EGI37901.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA271]
 gi|331070974|gb|EGI42333.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli TA280]
 gi|331076168|gb|EGI47450.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H591]
 gi|331081035|gb|EGI52200.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli H299]
 gi|332094594|gb|EGI99640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           boydii 5216-82]
 gi|332098459|gb|EGJ03425.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           boydii 3594-74]
 gi|332103941|gb|EGJ07287.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Shigella sp. D9]
 gi|332341802|gb|AEE55136.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia
           coli UMNK88]
 gi|332760729|gb|EGJ91017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 4343-70]
 gi|332761521|gb|EGJ91803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 2747-71]
 gi|332763736|gb|EGJ93974.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-671]
 gi|332768359|gb|EGJ98543.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri 2930-71]
 gi|333007845|gb|EGK27321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-218]
 gi|333008124|gb|EGK27599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri VA-6]
 gi|333010899|gb|EGK30325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-272]
 gi|333020700|gb|EGK39960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-227]
 gi|333021843|gb|EGK41091.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella
           flexneri K-304]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|320164596|gb|EFW41495.1| Rca1p [Capsaspora owczarzaki ATCC 30864]
          Length = 1070

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R ++L GP G+GK+ +A   + +S     S        +++      + +
Sbjct: 613 RGLMLTGPPGTGKTLIAKAIAGESGVNFISAAGTDFVEMVVGVGPARVRD 662


>gi|315320470|ref|YP_004072526.1| metallo-endopeptidase FtsH [Thalassiosira oceanica CCMP1005]
 gi|283568943|gb|ADB27480.1| metallo-endopeptidase FtsH [Thalassiosira oceanica CCMP1005]
          Length = 642

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   ++++    FS        + I      + +
Sbjct: 219 ILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEMFIGIGAARVRD 266


>gi|308178457|ref|YP_003917863.1| ABC transporter ATPase and permease components [Arthrobacter
           arilaitensis Re117]
 gi|307745920|emb|CBT76892.1| putative ABC transporter, ATPase and permease components
           [Arthrobacter arilaitensis Re117]
          Length = 586

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88
               P    +   DL V+   +  V+ +  +   P  ++ LVG SGSGKS   ++ +   
Sbjct: 335 PLPLPTSGTLRVADLEVNYGNQLVVQDVC-FELEPGSLLALVGESGSGKS---SVAAALV 390

Query: 89  RSTRFSNIAKSLDSILIDTR 108
           RS   S  A      L+D  
Sbjct: 391 RSVPASGTATFWQVPLVDAS 410


>gi|298706824|emb|CBJ25788.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 709

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           +++ GP G GK+ +A   + +S +   S  A +L
Sbjct: 430 ILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTL 463


>gi|299755068|ref|XP_002912064.1| katanin p60 ATPase domain-containing protein [Coprinopsis cinerea
           okayama7#130]
 gi|298411055|gb|EFI28570.1| katanin p60 ATPase domain-containing protein [Coprinopsis cinerea
           okayama7#130]
          Length = 434

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + +++ST FS  +  L
Sbjct: 162 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDL 199


>gi|283784714|ref|YP_003364579.1| ATPase [Citrobacter rodentium ICC168]
 gi|282948168|emb|CBG87735.1| putative ATPase [Citrobacter rodentium ICC168]
          Length = 447

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA + +  + +   R S +   +  I     +       +      T
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|296087735|emb|CBI34991.3| unnamed protein product [Vitis vinifera]
          Length = 288

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 41  DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF------- 93
           DDL+  S  E+    I    +W    + L GP G+GKS + +  ++      +       
Sbjct: 58  DDLIAFSKAEEFYARIGR--AWKRGYL-LYGPPGTGKSTMISAMANLLGYDVYDLELTSV 114

Query: 94  -SNIAKSLDSILIDTRKPVLLEDID 117
             N       I I +R  +++EDID
Sbjct: 115 KDNTELRRLLIEISSRSIIVIEDID 139


>gi|294889675|ref|XP_002772916.1| 26S protease regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239877496|gb|EER04732.1| 26S protease regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 926

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 230 PPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRE 281


>gi|254577135|ref|XP_002494554.1| ZYRO0A04224p [Zygosaccharomyces rouxii]
 gi|238937443|emb|CAR25621.1| ZYRO0A04224p [Zygosaccharomyces rouxii]
          Length = 437

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     + 
Sbjct: 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLC 264


>gi|269837856|ref|YP_003320084.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943107|sp|D1C4U5|FTSH3_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|269787119|gb|ACZ39262.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 489

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 53/203 (26%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP-- 110
           R V+L GP G+GK+ LA   + ++                    AK +  +    RK   
Sbjct: 89  RGVLLAGPPGTGKTLLARAVAGEAGVPFFAMSASQFVEVYVGVGAKRVRDLFAAARKASP 148

Query: 111 --VLLEDIDLLDFN----------DTQL---------FHIINSIHQYDSSLLMTARTFPV 149
             V +++ID +             +  L         FH         + +++ A     
Sbjct: 149 AIVFIDEIDAIGRRRGDSQSHQEYEQTLNQVLVELDGFH------PRQAVVVIAATNRSD 202

Query: 150 SWGVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206
                L      L+       V++SLPD      ++     D+ +  D  L A   + + 
Sbjct: 203 ILDPAL------LRPGRFDRRVELSLPDRAERAAILRVHAQDKPLAPDVDLDALAARTVG 256

Query: 207 RSLVFAEKLVDKMDNLALSRGMG 229
            S    E   + ++  AL     
Sbjct: 257 LSGADLE---NTLNEAALLALRR 276


>gi|227833218|ref|YP_002834925.1| recombination factor protein [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184204|ref|ZP_06043625.1| recombination factor protein RarA [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454234|gb|ACP32987.1| recombination factor protein [Corynebacterium aurimucosum ATCC
           700975]
          Length = 451

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 52/141 (36%), Gaps = 23/141 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113
           VIL GP G+GK+ LA++ +                       I  +   ++   R  + +
Sbjct: 68  VILYGPPGTGKTTLASLIASSLGDNFIGLSALDSGVKQVREVITHARRELIEGRRTVLFI 127

Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           +++          L     +  +  + LL+ A T   S+ V  P     L  + ++ +  
Sbjct: 128 DEVHRFSKTQQDALL----AAVENRTVLLVAATTENPSFSVVAPL----LSRSLLLHLEP 179

Query: 173 PDDDFLEKVIVKMF-ADRQIF 192
            DD  L  +  +   ++R + 
Sbjct: 180 LDDASLRSLAERALKSERGLA 200


>gi|224010030|ref|XP_002293973.1| 26S proteasome regulatory ATPase subunit [Thalassiosira pseudonana
           CCMP1335]
 gi|220970645|gb|EED88982.1| 26S proteasome regulatory ATPase subunit [Thalassiosira pseudonana
           CCMP1335]
          Length = 431

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 206 PPKGVLLYGPPGTGKTLTARAVANRTDACFIRVIGSELVQKYVGEGARMVRE 257


>gi|219850937|ref|YP_002465369.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
 gi|219545196|gb|ACL15646.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris
           E1-9c]
          Length = 810

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ +A   + +S +    
Sbjct: 495 PPKGVLLYGPPGTGKTLIAKAAAHESGANFIP 526



 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ +A   + +S +   +
Sbjct: 222 PPKGVLLYGPPGTGKTLIAKAVASESGAHFIA 253


>gi|212715819|ref|ZP_03323947.1| hypothetical protein BIFCAT_00720 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661186|gb|EEB21761.1| hypothetical protein BIFCAT_00720 [Bifidobacterium catenulatum DSM
           16992]
          Length = 357

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 30/181 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P   ++L GP G GK+ LA I +++        S          +     +D  + + ++
Sbjct: 68  PPDHILLAGPPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFID 127

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD---------------- 157
           +I  L     +L +I     +     +M  +     S  + LP                 
Sbjct: 128 EIHRLPRAAEELLYI---AMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSP 184

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L +R      +     ++  LEK+I +  A   I ++   A  +  R   +   A +L+ 
Sbjct: 185 LRARFGFTAHLDFYPHEE--LEKLIERSSAVLGIRLEDGAAHQLAMRSRGTPRIANRLLR 242

Query: 218 K 218
           +
Sbjct: 243 R 243


>gi|157092229|gb|ABV21970.1| replicase protein [Porcine circovirus 2]
          Length = 314

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL- 118
             W + V ++VGP G GKS  A  ++D   +       K  D       + V+++D +  
Sbjct: 163 RDWKTNVHVIVGPPGCGKSKWAANFADPETTYWKPPRNKWWDG--YHGEEVVVIDDFNGW 220

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P+ W
Sbjct: 221 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEW 262


>gi|119476161|ref|ZP_01616513.1| hypothetical protein GP2143_06210 [marine gamma proteobacterium
           HTCC2143]
 gi|119450788|gb|EAW32022.1| hypothetical protein GP2143_06210 [marine gamma proteobacterium
           HTCC2143]
          Length = 441

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDT 124
           +IL GP G GK+ LA + +D   +   +  A       I       +E+      +   T
Sbjct: 53  MILWGPPGVGKTSLARLIADLCDAHFITLSAVLAGVKDIRAS----VEEARQYQANGRQT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFIDEVHRFNKSQQD 124


>gi|11467496|ref|NP_043642.1| ORF 644 [Odontella sinensis]
 gi|1706925|sp|P49825|FTSH_ODOSI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1185191|emb|CAA91674.1| ORF 644 [Odontella sinensis]
          Length = 644

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   ++++    FS        + I      + +
Sbjct: 222 ILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEMFIGIGAARVRD 269


>gi|327439425|dbj|BAK15790.1| ATP-dependent protease Clp, ATPase subunit [Solibacillus silvestris
           StLB046]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 112 IVLIGPTGSGKTLLAQTLA------RILNVPFAIADATSLTEAGYVGEDVENI 158


>gi|327303530|ref|XP_003236457.1| mitochondrial AAA ATPase [Trichophyton rubrum CBS 118892]
 gi|326461799|gb|EGD87252.1| mitochondrial AAA ATPase [Trichophyton rubrum CBS 118892]
          Length = 997

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
             ++L GP G+GK+ LA   + +S +T   
Sbjct: 725 PGLLLYGPPGTGKTMLAKAVARESGATVLE 754


>gi|323489955|ref|ZP_08095176.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus
           donghaensis MPA1U2]
 gi|323396251|gb|EGA89076.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus
           donghaensis MPA1U2]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 112 IVLIGPTGSGKTLLAQTLA------RILNVPFAIADATSLTEAGYVGEDVENI 158


>gi|310795231|gb|EFQ30692.1| ATPase [Glomerella graminicola M1.001]
          Length = 967

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           ++++L GP G GK+ LA++ + ++ 
Sbjct: 283 KILMLTGPPGLGKTTLAHVCARQAG 307


>gi|299535609|ref|ZP_07048930.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus
           fusiformis ZC1]
 gi|298728809|gb|EFI69363.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus
           fusiformis ZC1]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 112 IVLIGPTGSGKTLLAQTLA------RILNVPFAIADATSLTEAGYVGEDVENI 158


>gi|325673798|ref|ZP_08153488.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325555063|gb|EGD24735.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 833

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 26/182 (14%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           V + +  A  L+D+  S PS +V++ G SGSGKS + N+  +   +     +     +  
Sbjct: 14  VLAGVRGAQGLLDTAGSDPSALVLVRGRSGSGKSLVLNVIREHLIAHGHDVVTTVAAAET 73

Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV-----SWGVCLPDLC 159
           +D    ++++    L  +D  L  +   + + D  +++     P      + G  +  L 
Sbjct: 74  VDAV--LVIDGAHTLPADD--LAALHRLVQRNDRGVVVAVEPRPHDPALCALGTTMQTLG 129

Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-------VQRMERSLVFA 212
           S      V  +           I      R I     LA  +       +  ++  L  A
Sbjct: 130 S------VFDLG----ALTPADIADRARARGIEPTPSLARSLHEWTGGALTHVDAGLAAA 179

Query: 213 EK 214
             
Sbjct: 180 RH 181


>gi|260222275|emb|CBA31676.1| sn-glycerol-3-phosphate import ATP-binding protein ugpC
          [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 358

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSD 86
          P   +ILVGPSG GKS L NI + 
Sbjct: 33 PGEFLILVGPSGCGKSTLLNIIAG 56


>gi|242046886|ref|XP_002461189.1| hypothetical protein SORBIDRAFT_02g042560 [Sorghum bicolor]
 gi|241924566|gb|EER97710.1| hypothetical protein SORBIDRAFT_02g042560 [Sorghum bicolor]
          Length = 1060

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 45/164 (27%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + ++L GP G+GK+ LA   + ++ +   +    S+ S      +             
Sbjct: 792 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIASKWFGEGEKYVKAVFSLASKI 851

Query: 110 ---PVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144
               + ++++D +            +  + N              +  L++ A       
Sbjct: 852 SPSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKVKERVLVLAATNRPFDL 911

Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181
                R  P    V LPD  +R  + +  + K  L DD  LE +
Sbjct: 912 DEAVVRRLPRRLMVNLPDAPNRKKILSVILAKEDLADDVDLEAL 955


>gi|170055071|ref|XP_001863417.1| 26S protease regulatory subunit 7 [Culex quinquefasciatus]
 gi|167875161|gb|EDS38544.1| 26S protease regulatory subunit 7 [Culex quinquefasciatus]
          Length = 433

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 328 DPALMRPGRLDRKVEFGLPDLEGR 351


>gi|170031637|ref|XP_001843691.1| replication factor C subunit 3 [Culex quinquefasciatus]
 gi|167870519|gb|EDS33902.1| replication factor C subunit 3 [Culex quinquefasciatus]
          Length = 358

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 21/131 (16%)

Query: 95  NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ---YDSSLLM----TARTF 147
              + +D       K ++L ++D L  +     H +    +       L++    T+R  
Sbjct: 116 AQTQQIDPSGQREFKTIVLSEVDELTKDAQ---HALRRTMEKYVATCRLVLCVNSTSRVI 172

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P           SR      +++S P  + +  ++  +     + I  +LA  I Q+ +R
Sbjct: 173 PAV--------KSR---CLGIRVSAPTGEEIVGILNNICKKEGLHIPPELATRITQKSDR 221

Query: 208 SLVFAEKLVDK 218
           +L  A  +++ 
Sbjct: 222 NLRRAILMLEA 232


>gi|167999145|ref|XP_001752278.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696673|gb|EDQ83011.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 334

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
          P R ++L GP G+GK+ LA   + ++ +   +
Sbjct: 62 PCRGLLLFGPPGTGKTMLAKAVATEAGANFIN 93


>gi|126653683|ref|ZP_01725602.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905]
 gi|169829419|ref|YP_001699577.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus
           sphaericus C3-41]
 gi|238688198|sp|B1HVE5|CLPX_LYSSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|126589720|gb|EAZ83855.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905]
 gi|168993907|gb|ACA41447.1| ATP-dependent Clp protease ATP-binding subunit [Lysinibacillus
           sphaericus C3-41]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 112 IVLIGPTGSGKTLLAQTLA------RILNVPFAIADATSLTEAGYVGEDVENI 158


>gi|153003645|ref|YP_001377970.1| recombination factor protein RarA [Anaeromyxobacter sp. Fw109-5]
 gi|152027218|gb|ABS24986.1| AAA ATPase central domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 444

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            +I+ GP G+GK+ LA I + ++ +    
Sbjct: 52 PSLIVWGPPGTGKTTLARIVAKRTGAEFVP 81


>gi|118411141|ref|YP_874535.1| cell division protein FtsH-like protein [Thalassiosira pseudonana]
 gi|224015722|ref|XP_002297509.1| plastid division protein [Thalassiosira pseudonana CCMP1335]
 gi|116739888|gb|ABK20758.1| cell division protein FtsH-like protein [Thalassiosira pseudonana]
 gi|220967773|gb|EED86149.1| plastid division protein [Thalassiosira pseudonana CCMP1335]
          Length = 642

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   ++++    FS        + I      + +
Sbjct: 219 ILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEMFIGIGAARVRD 266


>gi|78059713|ref|YP_366288.1| hypothetical protein Bcep18194_C6594 [Burkholderia sp. 383]
 gi|77964263|gb|ABB05644.1| hypothetical protein Bcep18194_C6594 [Burkholderia sp. 383]
          Length = 754

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 22/123 (17%)

Query: 40  RDDL---LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96
           RDDL   ++  +  +AV  +D         V+L+G   +GK+ +A++ +  +     S++
Sbjct: 176 RDDLAKVVITESYRKAVNALDE-----HGFVLLIGEPAAGKTTIASMLAMAAADKWKSSV 230

Query: 97  AKSLDSI-------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-------DSSLLM 142
            K  D         + +  +   ++D   +   ++ L H  N             + ++M
Sbjct: 231 LKLADPAKIVERWNVDEPSQFFWIDDAFGVTQYESPLVHGWNHSLAQVKTMLRRGAKIVM 290

Query: 143 TAR 145
           T+R
Sbjct: 291 TSR 293


>gi|14520329|ref|NP_125804.1| replication factor C large subunit [Pyrococcus abyssi GE5]
 gi|42559542|sp|Q9V2G3|RFCL_PYRAB RecName: Full=Replication factor C large subunit; Short=RFC large
           subunit; AltName: Full=Clamp loader large subunit;
           AltName: Full=PabRFC large subunit
 gi|5457544|emb|CAB49035.1| rfcL activator 1, replication factor C, large subunit [Pyrococcus
           abyssi GE5]
          Length = 479

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 33/181 (18%)

Query: 54  RLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS---------------N 95
             I++W          ++L GP GSGK+      + +                       
Sbjct: 30  AWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYALAREYNFEVIELNASDERTYDKIARYV 89

Query: 96  IAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152
            A     IL   RK + L++ D +      +     +I+        ++M A      W 
Sbjct: 90  QAAYTMDILGKRRKIIFLDEADNIEPSGAPEIA--KLIDRARN---PIIMAAN---HYWE 141

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
           V   ++  R   A +V+        +   +V++     I + K++   I +R    L  A
Sbjct: 142 V-PKEIRDR---AELVEYKRLTQRDVINALVRILKREGITVPKEVLVEIAKRASGDLRAA 197

Query: 213 E 213
            
Sbjct: 198 I 198


>gi|302141673|emb|CBI18876.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 146 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 192


>gi|301099285|ref|XP_002898734.1| IQ and AAA domain-containing protein, putative [Phytophthora
           infestans T30-4]
 gi|262104807|gb|EEY62859.1| IQ and AAA domain-containing protein, putative [Phytophthora
           infestans T30-4]
          Length = 869

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           R ++L GP GSGK+ L +  ++++ +   +    +L         P
Sbjct: 556 RSLMLYGPRGSGKTMLVSALANETGALLLNLSPSNLAGKFPGKTGP 601


>gi|290954958|ref|YP_003486140.1| hypothetical protein SCAB_3601 [Streptomyces scabiei 87.22]
 gi|260644484|emb|CBG67569.1| putative WD-40 repeat protein [Streptomyces scabiei 87.22]
          Length = 1210

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 65/206 (31%), Gaps = 40/206 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWS-----------DKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           R   + GPSGSGKS L                 +  + R     +           P + 
Sbjct: 111 RFAAVFGPSGSGKSSLLRAGLIPVLQNARGRDRRPAAIRILTPGEHPARSHAPVLSPAVA 170

Query: 114 EDID-----LLDFND-TQLFHIINSIHQYDSS--LLMTARTFPVSWGVCLP--------- 156
            D D     ++  +   ++F + +   +      LL+TAR       V L          
Sbjct: 171 SDGDGGTDTVILVDQFEEVFTLCHDPDERARFIDLLLTARQPVSRLRVLLAVRGDFYGRC 230

Query: 157 ----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
               DL   L+ A ++         L   +VK      + +++     +  R+   +  A
Sbjct: 231 AEHRDLADALRDANLLA-GPMSPAELRNAVVKPATAAGLTVERA----LTARLVEEVADA 285

Query: 213 EKLVDKMDNLALS---RGMGITRSLA 235
              +  + +  L    R  G T +L 
Sbjct: 286 PGGLPLLSHALLETWRRRRGKTLTLT 311


>gi|256849363|ref|ZP_05554796.1| ABC transporter ATP-binding protein [Lactobacillus crispatus
           MV-1A-US]
 gi|256714139|gb|EEU29127.1| ABC transporter ATP-binding protein [Lactobacillus crispatus
           MV-1A-US]
          Length = 450

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL------EDI 116
           P    +L+GP+G GKS L  I +       +   A  L  ++    +   +      E  
Sbjct: 26  PHGFSLLIGPTGCGKSTLLKIIAG-----LYPKYAGRLTGMVDLHGQKAAMMFQNAAEQF 80

Query: 117 DLLDFNDTQLFHIINSIHQYDSS 139
            +    +  +F + N        
Sbjct: 81  TMPTPREEIVFALENLQLNEGEY 103


>gi|256397526|ref|YP_003119090.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM
           44928]
 gi|256363752|gb|ACU77249.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM
           44928]
          Length = 672

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 42  DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101
           + L   A  QA+         P  V+ L GP G+GK+ LA   + ++    FS       
Sbjct: 193 EFLEAPAKFQAIG-----AKIPKGVL-LYGPPGTGKTLLARAVAGEAGVPFFSISGSDFV 246

Query: 102 SILIDTRKPVLLEDIDLLDFNDTQL 126
            + +      + +  +    N   +
Sbjct: 247 EMFVGVGASRVRDLFEQAKANAPAI 271


>gi|282600857|ref|ZP_05979925.2| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
 gi|282571161|gb|EFB76696.1| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
          Length = 681

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR 89
           V+LVGP G+GK+ LA   + ++ 
Sbjct: 225 VLLVGPPGTGKTLLARACAGEAG 247


>gi|223999359|ref|XP_002289352.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335]
 gi|220974560|gb|EED92889.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335]
          Length = 678

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 44/145 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE--DIDLLD 120
            SR V+  GP G GK+ +A   +++  +   S     L +      +  + +  D     
Sbjct: 393 ASRGVLFYGPPGCGKTLMAKAIANECGANFISVKGPELLNAYFGGSEANVRDLFDKARAA 452

Query: 121 FNDTQLFH---------------------IINSIHQY------DSSLLMTART------- 146
                 F                      +IN I           +L +   T       
Sbjct: 453 SPCILFFDEMDSIARARGSGGGSSETSDRVINQILSEIDGIGSGKTLFIIGATNRPDILD 512

Query: 147 ----FPVSWG----VCLPDLCSRLK 163
                P        + LPDL SR+ 
Sbjct: 513 PGIMRPGRLDQLIYIPLPDLESRIS 537



 Score = 37.1 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 65/171 (38%), Gaps = 34/171 (19%)

Query: 63  PSRV-VILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILI 105
           P+   V+L GP G GK+ +AN   +++ +                   +N+ ++ +    
Sbjct: 118 PTPKGVLLHGPPGCGKTLIANALMEETGAHVVVINGPEIMARKGGESEANLRQAFEEAQQ 177

Query: 106 DTRKPVLLEDIDLLD--FNDT----------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153
            +   + ++++D +    +            QL  +++S+    + +++ A   P     
Sbjct: 178 KSPSIIFMDELDSIAPKRDQAQGETEKRIVSQLLTLMDSLKANSNVIVIGATNRPNVIES 237

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
            L     R       +I++PD+D   +++     D  +     +  + + R
Sbjct: 238 ALRR-PGRFDREL--EIAIPDEDGRFEILQIKMKD--MKTAPDVNIFQIAR 283


>gi|242793974|ref|XP_002482275.1| membrane-spanning ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718863|gb|EED18283.1| membrane-spanning ATPase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 425

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 146 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 176


>gi|218463625|ref|ZP_03503716.1| AAA ATPase [Rhizobium etli Kim 5]
          Length = 187

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFND 123
            +++ G SGSGKS L     ++S       I         L D    ++++     +  +
Sbjct: 26  RLLVQGNSGSGKSHLLRRLLEQSAQWVQQVIIDPEGDFVTLSDRFGHIVVD----GERTE 81

Query: 124 TQLFHIINSIHQYDSSLLMT 143
            +L  I N I Q+  S ++T
Sbjct: 82  AELAGIANRIRQHRVSCVLT 101


>gi|195400683|ref|XP_002058945.1| GJ15265 [Drosophila virilis]
 gi|194141597|gb|EDW58014.1| GJ15265 [Drosophila virilis]
          Length = 487

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS 90
           P R ++L GP GSGK+ LA     ++R 
Sbjct: 248 PWRSLLLHGPPGSGKTFLAKALYAETRG 275


>gi|194761458|ref|XP_001962946.1| GF15688 [Drosophila ananassae]
 gi|190616643|gb|EDV32167.1| GF15688 [Drosophila ananassae]
          Length = 553

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 49/191 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108
           P R V+L GP G+GK+ +A   + ++R+  FS    +L S               +    
Sbjct: 312 PPRGVLLFGPPGTGKTLIAKSIASQARAKFFSINPSTLTSKWVGEAEKLVKTLFAVAAAH 371

Query: 109 KPVL--LEDIDLL----DFNDTQ---------LFHIINSIHQYDSSLLMTART-FPVSWG 152
           +P +  ++++D L      N+ +         L H+  +    ++ +L+   T  P    
Sbjct: 372 QPAIIFIDEVDSLLSKRSGNENESTLRLKNEFLIHLDGAASSEETRILVIGATNRPQEL- 430

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
               D   R +    + + LP  +   K+I K+   RQ+                +L   
Sbjct: 431 ----DEAVRRRFVRRLYVPLPTKEARLKIIEKLI--RQVKHSL------------NLSDV 472

Query: 213 EKLVDKMDNLA 223
           E+L + MD  +
Sbjct: 473 EQLAELMDGYS 483


>gi|195996763|ref|XP_002108250.1| expressed hypothetical protein [Trichoplax adhaerens]
 gi|190589026|gb|EDV29048.1| expressed hypothetical protein [Trichoplax adhaerens]
          Length = 431

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P + ++L GP G+GKS LA   + ++ ++ F +++ S
Sbjct: 153 PWKGILLYGPPGTGKSYLAKAVATEANNSAFISVSSS 189


>gi|170016865|ref|YP_001727784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leuconostoc
           citreum KM20]
 gi|238688952|sp|B1MXT8|CLPX_LEUCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|169803722|gb|ACA82340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leuconostoc
           citreum KM20]
          Length = 415

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 22/113 (19%)

Query: 23  NKEEQ-LFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV------------ 66
           ++  Q L    P  +    +D ++         AV + + +      V            
Sbjct: 54  DQAAQVLSLPTPHQIVAELNDYVIGQEDAKKTLAVAVYNHYKRINENVSPTTDVELQKSN 113

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 114 IALIGPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 160


>gi|170094870|ref|XP_001878656.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647110|gb|EDR11355.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 463

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 64/175 (36%), Gaps = 38/175 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +T    I   L    +     ++          
Sbjct: 230 PPKGVLLFGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARSK 289

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
                  +++D +                  +  +IN +       +  ++ A   P + 
Sbjct: 290 KACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 349

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
              L  L   RL     V+ SLPD++    ++      R + +++ +   ++ R+
Sbjct: 350 DPAL--LRPGRLD--RRVEFSLPDNEGRAHILRIHA--RSMSVERDIRFDLIARL 398


>gi|154151966|ref|YP_001405584.1| AAA family ATPase, CDC48 subfamily protein [Candidatus
           Methanoregula boonei 6A8]
 gi|154000518|gb|ABS56941.1| AAA family ATPase, CDC48 subfamily [Methanoregula boonei 6A8]
          Length = 805

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 77/204 (37%), Gaps = 45/204 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109
           P + V+L GP G+GK+ +A   + +S +   S               + L  +  + R+ 
Sbjct: 218 PPKGVLLYGPPGTGKTLIAKAVASESGAHFISIAGPEVISKYYGESEQRLREVFEEAREN 277

Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLM--TARTFPVSWG 152
               + ++++D +                 QL  +++ + +    +++  T R   +   
Sbjct: 278 SPSIIFIDELDSIAPRREEVTGEVERRVVAQLLTMMDGLEERGQVVVIGATNRVDAIDAA 337

Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
           +  P    R      ++I +P +    +++      R + + + ++  ++ +     V A
Sbjct: 338 LRRP---GRFD--REIEIGVPGEPDRIEIL--KIHTRGMPLAEDVSLNVLAQQTHGFVGA 390

Query: 213 EKLVDKMDNLALSRGMGITRSLAA 236
                  D  AL+R   I R+L  
Sbjct: 391 -------DLAALAREAAI-RALRR 406



 Score = 36.3 bits (83), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ +A   + +S +    
Sbjct: 491 PPKGVLLFGPPGTGKTLIAKAVASESGANFIP 522


>gi|152968973|ref|YP_001334082.1| ATP-dependent protease ATP-binding subunit ClpX [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893387|ref|YP_002918121.1| ATP-dependent protease ATP-binding subunit ClpX [Klebsiella
           pneumoniae NTUH-K2044]
 gi|330011534|ref|ZP_08307120.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. MS 92-3]
 gi|166214780|sp|A6T5I1|CLPX_KLEP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|150953822|gb|ABR75852.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545703|dbj|BAH62054.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328534151|gb|EGF60786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella
           sp. MS 92-3]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|122066015|sp|Q817W4|RUVB_BACCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
          Length = 336

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 65/188 (34%), Gaps = 25/188 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI +++      +    ++            L+  D+L  ++   
Sbjct: 59  VLLYGPPGLGKTTLANIIANEMGVNVKTTSGPAIGRPGDLAAVLTALQPGDVLFIDEI-- 116

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPDDDFL 178
            H ++   +    +L      P     CL       P   S RL       +        
Sbjct: 117 -HRLHRSIEE---VLY-----PAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGA---TTR 164

Query: 179 EKVIVKMFADRQIFIDKK---LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
              +     DR   + +        +   +ER+    E  +D +  L ++R    T  +A
Sbjct: 165 AGALSAPLRDRFGVLSRVEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIA 224

Query: 236 AEVLKETQ 243
             +L+  +
Sbjct: 225 NRLLRRVR 232


>gi|159043048|ref|YP_001531842.1| sulfonate/nitrate/taurine transport system ATP-binding
           [Dinoroseobacter shibae DFL 12]
 gi|157910808|gb|ABV92241.1| sulfonate/nitrate/taurine transport system ATP-binding
           [Dinoroseobacter shibae DFL 12]
          Length = 249

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 66  VVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTR 108
           +V LVGPSG GKS LA+I +   ++R+ R S+       I  D  
Sbjct: 31  IVALVGPSGCGKSTLAHIAAGLIEARAGRISHGYTRHAMIFQDPA 75


>gi|99080129|ref|YP_612283.1| recombination factor protein RarA [Ruegeria sp. TM1040]
 gi|99036409|gb|ABF63021.1| Recombination protein MgsA [Ruegeria sp. TM1040]
          Length = 443

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 30/189 (15%)

Query: 68  ILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
           I  GP G GK+ +A + + ++     + S I   +  +            I   +   T 
Sbjct: 64  IFWGPPGVGKTTIARLLAQETDLHFVQISAIFTGVPDLKKVFEAA----KIRRQNGQGTL 119

Query: 126 LF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           LF    H  N   Q          ++L+   T           +    SR +   + ++S
Sbjct: 120 LFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAV---LSRAQVLVLERLS 176

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
           L D + L +   +    R + +  +    + Q  +        L++++          + 
Sbjct: 177 LADLERLTQRAEQALERR-LPLSPEARDALHQMADGDGRALLNLIEQV------SAWKVD 229

Query: 232 RSLAAEVLK 240
           + L  E L 
Sbjct: 230 QPLGREALA 238


>gi|320581811|gb|EFW96030.1| 26S protease regulatory subunit 8 [Pichia angusta DL-1]
          Length = 398

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 177 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRE 224


>gi|318061596|ref|ZP_07980317.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actG]
 gi|318077180|ref|ZP_07984512.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actF]
          Length = 684

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    +S        + +      + +  +    N   +
Sbjct: 209 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 268


>gi|316970971|gb|EFV54822.1| 26S protease regulatory subunit 7 [Trichinella spiralis]
          Length = 433

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 40/176 (22%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
               +  ++ID +                  +  +IN +       +  ++ A   P + 
Sbjct: 268 KACLIFFDEIDAIGGARFDDGMGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 152 GVCL--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
              L  P    RL     V+  LPD     + I K+ A RQ+ +++ +   ++ R+
Sbjct: 328 DPALVRP---GRLD--RKVEFGLPD-MEGRQHIFKIHA-RQMSVERDIRYDLLARL 376


>gi|305663834|ref|YP_003860122.1| ABC transporter related [Ignisphaera aggregans DSM 17230]
 gi|304378403|gb|ADM28242.1| ABC transporter related [Ignisphaera aggregans DSM 17230]
          Length = 233

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 31/106 (29%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            + ++GPSGSGK+ L NI                L  +   T+  V ++ ID+   +D +
Sbjct: 32  FIAIMGPSGSGKTTLLNI----------------LGLLDKPTKGSVYIDGIDVSKLSDRE 75

Query: 126 L--------------FHIINSIHQ-YDSSLLMTARTFPVSWGVCLP 156
           L              F++IN +    +  + + AR  P    V L 
Sbjct: 76  LAKIRNLKLGFVFQHFNLINRLTVLENIEIPLIARGIPKQKRVELA 121


>gi|294140772|ref|YP_003556750.1| hypothetical protein SVI_2001 [Shewanella violacea DSS12]
 gi|293327241|dbj|BAJ01972.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 440

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 11/148 (7%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
            SR V++ GP G+GKS L    +     +     A ++ + +I    P L   +D  + N
Sbjct: 169 SSRPVLIYGPPGTGKSYLCRNLNATLGDSVLIPYAIAIGTEVIQVYDPQLHHAVD--NNN 226

Query: 123 DTQLFHIIN----SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV-----KISLP 173
           ++    ++        +    L +T             D  SR   A +       I L 
Sbjct: 227 ESAQLDLVQGHDPRWIECKRPLRITGGELTAEMLEVQFDSHSRTYMAPIQLKANNGILLL 286

Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYI 201
           DD   +++  K   +R I   ++   ++
Sbjct: 287 DDLGRQRISAKQLFNRWIIPMEERRDFL 314


>gi|291391634|ref|XP_002712275.1| PREDICTED: fidgetin [Oryctolagus cuniculus]
          Length = 759

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L +
Sbjct: 509 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVA 557


>gi|281177609|dbj|BAI53939.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli
           SE15]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|260946743|ref|XP_002617669.1| hypothetical protein CLUG_03113 [Clavispora lusitaniae ATCC 42720]
 gi|238849523|gb|EEQ38987.1| hypothetical protein CLUG_03113 [Clavispora lusitaniae ATCC 42720]
          Length = 1489

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 12/108 (11%)

Query: 5   KEDYSFFVPDKQKNDQPKNKEEQLFF----SFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60
           K DY     D+ +N   +  EEQ            + I  +D ++       +  +D W 
Sbjct: 823 KIDYKEAAGDENENSSSEKIEEQRDIFHWRDLTYSVKIKSEDRVI-------LNHVDGWV 875

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108
           + P +V  L+G SG+GK+ L N  S++  S   ++  + ++   +D+ 
Sbjct: 876 A-PGQVTALMGASGAGKTTLLNCLSERVTSGTITDGQRMVNGHGLDSS 922


>gi|207855929|ref|YP_002242580.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|238690386|sp|B5QTJ7|CLPX_SALEP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|206707732|emb|CAR32017.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRTHLDDYVIGQEQAKKVLALAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|196007252|ref|XP_002113492.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190583896|gb|EDV23966.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 434

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++          
Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELARSK 268

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
                  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 269 KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 329 DPALMRPGRLDRKVEFGLPDLEGR 352


>gi|154487344|ref|ZP_02028751.1| hypothetical protein BIFADO_01194 [Bifidobacterium adolescentis
           L2-32]
 gi|154083862|gb|EDN82907.1| hypothetical protein BIFADO_01194 [Bifidobacterium adolescentis
           L2-32]
          Length = 362

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 30/181 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P   ++L GP G GK+ LA I +++        S          +     +D  + + ++
Sbjct: 73  PPDHILLAGPPGLGKTTLAMIVANELEVPIRVTSGPAIQHAGDLASILSSLDAGEVLFID 132

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD---------------- 157
           +I  L     +L +I     +     +M  +     S  + LP                 
Sbjct: 133 EIHRLPRAAEELLYI---AMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSP 189

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L +R      +     ++  LEK+I +  A   I ++   A  +  R   +   A +L+ 
Sbjct: 190 LRARFGFTAHLDFYPHEE--LEKLIERSSAVLGIQLEDGAARQLAMRSRGTPRIANRLLR 247

Query: 218 K 218
           +
Sbjct: 248 R 248


>gi|154318948|ref|XP_001558792.1| hypothetical protein BC1G_02863 [Botryotinia fuckeliana B05.10]
 gi|150857993|gb|EDN33185.1| hypothetical protein BC1G_02863 [Botryotinia fuckeliana B05.10]
          Length = 418

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 150 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 180


>gi|149046585|gb|EDL99410.1| proteasome (prosome, macropain) 26S subunit, ATPase 2, isoform
           CRA_a [Rattus norvegicus]
          Length = 261

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 71  PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 130

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 131 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 190

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 191 DPALMRPGRLDRKIEFSLPDLEGR 214


>gi|217975146|ref|YP_002359897.1| Sporulation domain-containing protein [Shewanella baltica OS223]
 gi|217500281|gb|ACK48474.1| Sporulation domain protein [Shewanella baltica OS223]
          Length = 482

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 80/227 (35%), Gaps = 42/227 (18%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDS 102
            + E  ++ +    S+  ++++L G SGSGK+     LA  + + + +     +      
Sbjct: 10  PSQEALIQRMHHVASYSDQLLVLSGVSGSGKTTLVTGLATDFDESNAAFVICPMHADNAE 69

Query: 103 I-----LIDTRKPVLLEDIDLLD----------------FNDTQLF--HII------NSI 133
           I     +     P+  +DI L D                 +D  L    +       N I
Sbjct: 70  IRRKILVQLISSPIFDDDIPLADTLLRLASTQTKPLHIIIDDAHLLPKALWAECIILNQI 129

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAATVVKISL---PDDDFLEKVIVKMFADR 189
                ++ +T    P      LP L  +L +    + I     P+ + L + +++     
Sbjct: 130 QCAGKNIAVTLTVPPAFLADLLPQLPEQLRRQILPISIEPLTMPEREALYQTLLRYSEQN 189

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
                + +      ++E+     +++V+ +D  AL      T SL  
Sbjct: 190 PFTPREIVR----SQLEKQTGTPQEVVNLLDK-ALHSAPEKTSSLVK 231


>gi|149240323|ref|XP_001526037.1| 26S protease regulatory subunit 8 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450160|gb|EDK44416.1| 26S protease regulatory subunit 8 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 401

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           VIL GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 181 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRE 228


>gi|125553497|gb|EAY99206.1| hypothetical protein OsI_21164 [Oryza sativa Indica Group]
          Length = 855

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++ + ++  +
Sbjct: 534 PCRGILLFGPPGTGKTMLAKAIANDAGASFIN 565


>gi|55377649|ref|YP_135499.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
 gi|55230374|gb|AAV45793.1| cell division control protein 48 [Haloarcula marismortui ATCC
           43049]
          Length = 705

 Score = 38.2 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P   ++L GP G+GK+ LA   + +S           +    +   +  + E  +  
Sbjct: 484 PPSGILLYGPPGTGKTLLARAVAGESDVNFIHVAGPEIMDRYVGESEEAVRELFERA 540


>gi|323455706|gb|EGB11574.1| hypothetical protein AURANDRAFT_550 [Aureococcus anophagefferens]
          Length = 725

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS+ V+  GP G GK+ LA   + +  +   S
Sbjct: 491 PSKGVLFYGPPGCGKTLLAQAVAHECGANFIS 522



 Score = 37.4 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R V+L G  G GK+ +A   + ++ +  F                +N+ K+ D     
Sbjct: 212 PPRGVLLHGAPGCGKTSIARAVAAETGAYFFLINGAEILSKQAGEAEANLRKAFDEARKH 271

Query: 107 TRKPVLLEDIDLLD 120
               + L+++D + 
Sbjct: 272 APSLIFLDEVDAIA 285


>gi|315924490|ref|ZP_07920711.1| recombination protein A [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622194|gb|EFV02154.1| recombination protein A [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 370

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 17/99 (17%)

Query: 39  SRD-DLLVHSAIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLA-NIWSD---KSRSTR 92
           +RD D++  S++   + L I   P    R++ + GP  SGK+ LA +I ++   K  +  
Sbjct: 48  ARDVDVISTSSLRIDMALGIGGVPK--GRIIEIYGPESSGKTTLALHIIAEAQKKGGNAA 105

Query: 93  FSNIAKSLDSILIDTRKPVLLEDIDLL-----DFNDTQL 126
           F +   +LD I   +       DID L     D  +  L
Sbjct: 106 FIDAEHALDPIYAASLGV----DIDNLIVSQPDTGEQAL 140


>gi|307190445|gb|EFN74480.1| Chromosome transmission fidelity protein 18-like protein
           [Camponotus floridanus]
          Length = 805

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113
           R+ +L GP G GK+ LA+I +  +        A   D    DT + +LL
Sbjct: 239 RIALLSGPPGLGKTTLAHIAARHAGYNIVEINAS--DERSPDTFRQILL 285


>gi|304395500|ref|ZP_07377383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           aB]
 gi|308185909|ref|YP_003930040.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pantoea vagans
           C9-1]
 gi|304356794|gb|EFM21158.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp.
           aB]
 gi|308056419|gb|ADO08591.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pantoea vagans
           C9-1]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQERAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|302823487|ref|XP_002993396.1| hypothetical protein SELMODRAFT_137006 [Selaginella moellendorffii]
 gi|300138827|gb|EFJ05581.1| hypothetical protein SELMODRAFT_137006 [Selaginella moellendorffii]
          Length = 892

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 17/82 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110
           P   V+L GP G GK+ LA   + ++    +         +L+                 
Sbjct: 393 PPHGVLLEGPPGCGKTLLAKAVAGEAGVPFYQMAGSEFVEVLVGVGAARMRDLFLRAKVN 452

Query: 111 ----VLLEDIDLLDFNDTQLFH 128
               V +++ID L    ++ FH
Sbjct: 453 RPAVVFIDEIDALGGARSE-FH 473


>gi|300715592|ref|YP_003740395.1| ATP-dependent Clp protease ATP-binding protein ClpX [Erwinia
           billingiae Eb661]
 gi|299061428|emb|CAX58540.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Erwinia
           billingiae Eb661]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQERAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|319763663|ref|YP_004127600.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Alicycliphilus denitrificans BC]
 gi|330824072|ref|YP_004387375.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans K601]
 gi|317118224|gb|ADV00713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans BC]
 gi|329309444|gb|AEB83859.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Alicycliphilus denitrificans K601]
          Length = 421

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 17/72 (23%)

Query: 32  FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91
                   +DD+ +  +                  ++L+GP+GSGK+ LA   + +    
Sbjct: 100 LRHKDKAGKDDVELSKSN-----------------ILLIGPTGSGKTLLAQTLARQLDVP 142

Query: 92  RFSNIAKSLDSI 103
                A +L   
Sbjct: 143 FVMADATTLTEA 154


>gi|294678708|ref|YP_003579323.1| cell division protease FtsH [Rhodobacter capsulatus SB 1003]
 gi|294477528|gb|ADE86916.1| cell division protease FtsH [Rhodobacter capsulatus SB 1003]
          Length = 631

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
            +LVGP G+GK+ LA   + ++    F+        + +      + +  D    N
Sbjct: 190 ALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKN 245


>gi|302666472|ref|XP_003024835.1| hypothetical protein TRV_01000 [Trichophyton verrucosum HKI 0517]
 gi|291188908|gb|EFE44224.1| hypothetical protein TRV_01000 [Trichophyton verrucosum HKI 0517]
          Length = 416

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 147 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 177


>gi|291616550|ref|YP_003519292.1| ClpX [Pantoea ananatis LMG 20103]
 gi|291151580|gb|ADD76164.1| ClpX [Pantoea ananatis LMG 20103]
 gi|327392982|dbj|BAK10404.1| ATP-dependent Clp protease ATP- binding subunit ClpX [Pantoea
           ananatis AJ13355]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQERAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|294635325|ref|ZP_06713822.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Edwardsiella
           tarda ATCC 23685]
 gi|291091301|gb|EFE23862.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Edwardsiella
           tarda ATCC 23685]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKDVTPHRERSALPT----------PHEIRHHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|288924164|ref|ZP_06418207.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f]
 gi|288344492|gb|EFC78978.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f]
          Length = 149

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 22/103 (21%)

Query: 71  GPSGSGKSCLA---NIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VL 112
           GP G GK+ LA    + + ++  +   + A +  + L    +                ++
Sbjct: 1   GPPGIGKTHLAIGLGVKAAQAGCSVLFDTANNWITRLAAAHQAGHLDTELKKIRRYKLII 60

Query: 113 LEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
           ++++  + F+       F ++ +      S+L+T+      WG
Sbjct: 61  IDEVGYIPFDQDAANLFFQLV-ASRYEQGSILVTSNLPFGRWG 102


>gi|260946187|ref|XP_002617391.1| hypothetical protein CLUG_02836 [Clavispora lusitaniae ATCC 42720]
 gi|238849245|gb|EEQ38709.1| hypothetical protein CLUG_02836 [Clavispora lusitaniae ATCC 42720]
          Length = 809

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 72/213 (33%), Gaps = 54/213 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106
           P R ++L GP G+GK+ L    + + ++                   + +       +  
Sbjct: 263 PPRGILLHGPPGTGKTMLLRCVAHECQAHVLMVNGPSIVSKYLGETETALRAVFAEAVRF 322

Query: 107 TRKPVLLEDIDLLD---FNDTQ----------LFHIINSIHQYDSSLLMTARTFPVSWGV 153
               + +++ID L     ++            L  +++ +      +++ A   P +   
Sbjct: 323 QPAIIFMDEIDSLAPKRGSEDAGETESRVVATLLTMMDGMADAGRVVVVGATNRPNAID- 381

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
             P L    +    V++ +PD    E ++V+  A              ++R   S     
Sbjct: 382 --PALRRPGRFDQEVEVGIPDAAAREDILVRQLAR-------------MRRCRVSRAEIR 426

Query: 214 KLVDK------MDNLALSRG---MGITRSLAAE 237
            L +K       D  A+ R      I R+LA +
Sbjct: 427 ALAEKTHGYVGADLAAVCREGVMRAIGRALARD 459



 Score = 36.7 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 32/164 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110
           V+L GP G  K+  A   + +S     +                 + +            
Sbjct: 583 VLLYGPPGCSKTLAAKALASESGLNFLAVKGPEVFNKYVGESERAVREIFRKARAAAPSI 642

Query: 111 VLLEDIDLLDFNDTQ--------LFHIINSIH---QYDSSLLMTARTFPVSWGVCLPDLC 159
           V L++ID L   D          L  ++N I    +    +++ A   P      L  L 
Sbjct: 643 VFLDEIDALACRDESATSAGQNVLTSLLNEIDGVEELQGVVVVAATNRPTDIDPAL--LR 700

Query: 160 -SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202
             RL     + ++ PD +   ++I +  A   +    +L A + 
Sbjct: 701 PGRLD--RHIYVAPPDREARRELIARRCAKFSVDGADELFARLA 742


>gi|258577939|ref|XP_002543151.1| hypothetical protein UREG_02667 [Uncinocarpus reesii 1704]
 gi|237903417|gb|EEP77818.1| hypothetical protein UREG_02667 [Uncinocarpus reesii 1704]
          Length = 410

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 137 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 167


>gi|291297966|ref|YP_003509244.1| adenosinetriphosphatase [Stackebrandtia nassauensis DSM 44728]
 gi|290567186|gb|ADD40151.1| Adenosinetriphosphatase [Stackebrandtia nassauensis DSM 44728]
          Length = 749

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 14/78 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G GK+ L    +   RS   S     L +  +   +  + E          
Sbjct: 522 RGVLLYGPPGCGKTYLVKAIAGSGRSNVMSVKGAELLNKWVGESEASVRE---------- 571

Query: 125 QLFHIINSIHQYDSSLLM 142
               +     Q   +LL 
Sbjct: 572 ----LFRRARQAAPTLLF 585


>gi|313126645|ref|YP_004036915.1| ATPase AAA [Halogeometricum borinquense DSM 11551]
 gi|312293010|gb|ADQ67470.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM
           11551]
          Length = 718

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           P   V+L GP G+GK+ LA   + +S           L    +   +  + E  +  
Sbjct: 492 PPSGVLLHGPPGTGKTLLARAIAGESEVNFIHVAGPELLDRYVGESEKSVREVFERA 548


>gi|119603737|gb|EAW83331.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2, isoform
           CRA_a [Homo sapiens]
          Length = 287

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           P + V+L GP G+GK+  A   ++++ +     I   L    ++ +KP 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVEQKKPA 256


>gi|159039406|ref|YP_001538659.1| ATP-dependent protease ATP-binding subunit ClpX [Salinispora
           arenicola CNS-205]
 gi|189044146|sp|A8M1K7|CLPX_SALAI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|157918241|gb|ABV99668.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salinispora
           arenicola CNS-205]
          Length = 429

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+G GK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 116 ILLLGPTGCGKTHLAQTLA------RMLNVPFAIADATALTEAGYVGEDVENI 162


>gi|115313820|gb|AAI24306.1| Zgc:153294 [Danio rerio]
          Length = 503

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 31/122 (25%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------------NIAKSLDSILI 105
           R ++L+GP G GK+ L    +    +T  +                   ++ +       
Sbjct: 222 RGLLLIGPPGVGKTLLVRCVAKDFGATLVTVNGPEVTGSRPGESEENLRHVFEQAQDAAD 281

Query: 106 DTRKPVLLEDIDLLD--------FND----TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153
           +    +L+++ID L           +     QL  ++++I  ++  +++ A   P S   
Sbjct: 282 EGPCVLLIDEIDSLCPRRTGSSSAPENRLVAQLLTLMDAIGSHEGFVIIGATNQPDSLDP 341

Query: 154 CL 155
            L
Sbjct: 342 AL 343


>gi|77166167|ref|YP_344692.1| ATPase-like [Nitrosococcus oceani ATCC 19707]
 gi|76884481|gb|ABA59162.1| ATPase-like protein [Nitrosococcus oceani ATCC 19707]
          Length = 1106

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
           I+ GP+G+GK+ L +    +  +                    VL++  D+ DF +T L 
Sbjct: 59  IITGPAGAGKTHLLSAIRQEVAAL---------------PAWFVLVDMTDIKDFWETVLL 103

Query: 128 HIINSIHQY 136
             +NS+ Q 
Sbjct: 104 GYLNSLQQA 112


>gi|6325183|ref|NP_015251.1| Yta6p [Saccharomyces cerevisiae S288c]
 gi|19859302|sp|P40328|TBP6_YEAST RecName: Full=Probable 26S protease subunit YTA6; AltName:
           Full=Tat-binding homolog 6
 gi|1147619|gb|AAB68264.1| Yta6p: Member of CDC48/PAS1/SEC18 family of ATPases [Saccharomyces
           cerevisiae]
 gi|190407879|gb|EDV11144.1| hypothetical protein SCRG_02420 [Saccharomyces cerevisiae RM11-1a]
 gi|285815466|tpg|DAA11358.1| TPA: Yta6p [Saccharomyces cerevisiae S288c]
          Length = 754

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ +A   + +S ST FS  A SL S  +   + ++
Sbjct: 503 PVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLV 552


>gi|11465515|ref|NP_045094.1| cell division protein [Cyanidium caldarium]
 gi|14423719|sp|O19922|FTSH_CYACA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2465738|gb|AAB82667.1| unknown [Cyanidium caldarium]
          Length = 614

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G+GK+ LA   + ++ +  FS        + +      + +
Sbjct: 207 VLLVGPPGTGKTLLAKAIAGEASAPFFSISGSEFVEMFVGVGASRVRD 254


>gi|159113698|ref|XP_001707075.1| Spastin [Giardia lamblia ATCC 50803]
 gi|157435177|gb|EDO79401.1| Spastin [Giardia lamblia ATCC 50803]
          Length = 1118

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           S  +++ G  G GK+ L+ I + ++ +    
Sbjct: 781 SNTLLIYGAPGVGKTLLSRIIATETGALVID 811


>gi|312138052|ref|YP_004005388.1| cell division related ATP-dependent protease ftsh [Rhodococcus equi
           103S]
 gi|311887391|emb|CBH46703.1| cell division related ATP-dependent protease FtsH [Rhodococcus equi
           103S]
          Length = 777

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 19/81 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K+K +QL    P+         D          D L + A  QA+         P  V+ 
Sbjct: 150 KSKAKQLSKDMPKTTFADVAGADEAVEELYEIKDFLQNPARYQALG-----AKIPKGVL- 203

Query: 69  LVGPSGSGKSCLANIWSDKSR 89
           L GP G+GK+ LA   + ++ 
Sbjct: 204 LYGPPGTGKTLLARAVAGEAG 224


>gi|309274640|gb|ADN88296.2| IstB [Ochrobactrum sp. CTN-11]
 gi|316953674|gb|ADN88302.2| IstB [Pseudoxanthomonas sp. CTN-8]
 gi|316953676|gb|ADN88305.2| IstB [Bordetella sp. CTN-10]
 gi|316953678|gb|ADN88308.2| IstB [Shinella sp. CTN-13]
 gi|316953680|gb|ADN88311.2| IstB [Caulobacter sp. CTN-14]
          Length = 257

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 26/120 (21%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKSCLANIW---SDKSR----------------STRF 93
           +R I+   +      +L+GPSG GK+ LA      + ++                 + R 
Sbjct: 95  LRFIERSQN-----AVLLGPSGVGKTHLAIAIGYAATQAGIKTKFITAADLMLQLEAARR 149

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI--HQYDSSLLMTARTFPVSW 151
                ++    I   + +++++I  L  +  Q  H    +       S+++T+      W
Sbjct: 150 QERYDAVLRHNILGPRLLIVDEIGYLPLSGDQASHFFQIVAKRYERGSMILTSNLPFTQW 209


>gi|311280665|ref|YP_003942896.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cloacae SCF1]
 gi|308749860|gb|ADO49612.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter
           cloacae SCF1]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRHHLDDYVIGQEKAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|307332489|ref|ZP_07611549.1| IstB domain protein ATP-binding protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306881870|gb|EFN12996.1| IstB domain protein ATP-binding protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 279

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 22/118 (18%)

Query: 61  SWPSRVVILV--GPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSL 100
            W SR   L   GPSG+GKS LA   ++K+                        +   S 
Sbjct: 119 EWISRAENLACAGPSGTGKSHLAEALANKAIDEGMKVSWFTLESLTAHLGRATVDSTVSK 178

Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156
               I     ++++DI +L         F+ +        S+++T+   P  +   +P
Sbjct: 179 AVAKITRSDLIIVDDIGMLPSGQAAAEAFYCLIDAAYERRSVIVTSNLHPSGFDSIMP 236


>gi|298246220|ref|ZP_06970026.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
 gi|297553701|gb|EFH87566.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM
           44963]
          Length = 668

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 28/146 (19%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------DTR 108
           R V+LVGP G+GK+ LA   + ++    FS        +L+                   
Sbjct: 246 RGVLLVGPPGTGKTLLARAVAGEASVPFFSMSGSEFVEVLVGVGASRVRDLFEQAKKAAP 305

Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
             + +++ID +          INS  + + +L            V +    +R     + 
Sbjct: 306 SIIFIDEIDAVGRQRGS---SINSNDEREQTL--------NQLLVEMDGFDTRQAVVVIA 354

Query: 169 KISLPDDDFLEKVIVKMFADRQIFID 194
             + PD    + ++     DR++ +D
Sbjct: 355 ATNRPD-GLDKALLRPGRFDRRVTVD 379


>gi|288924269|ref|ZP_06418293.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f]
 gi|288344381|gb|EFC78886.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f]
          Length = 151

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 22/103 (21%)

Query: 71  GPSGSGKSCLA---NIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VL 112
           GP G GK+ LA    + + ++  +   + A +  + L    +                ++
Sbjct: 3   GPPGIGKTHLAIGLGVKAAQAGCSVLFDTANNWITRLAAAHQAGHLDTELKKIRRYKLII 62

Query: 113 LEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
           ++++  + F+       F ++ +      S+L+T+      WG
Sbjct: 63  IDEVGYIPFDQDAANLFFQLV-ASRYEQGSILVTSNLPFGRWG 104


>gi|259150084|emb|CAY86887.1| Yta6p [Saccharomyces cerevisiae EC1118]
          Length = 754

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ +A   + +S ST FS  A SL S  +   + ++
Sbjct: 503 PVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLV 552


>gi|242058021|ref|XP_002458156.1| hypothetical protein SORBIDRAFT_03g027870 [Sorghum bicolor]
 gi|241930131|gb|EES03276.1| hypothetical protein SORBIDRAFT_03g027870 [Sorghum bicolor]
          Length = 612

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           P  +V +VGPSG+GK+ L ++ +  +   R       +D + +D  +
Sbjct: 68  PGELVAIVGPSGAGKTTLLSVLAGSADPARVVGGEVLVDGLPMDAAR 114


>gi|295669392|ref|XP_002795244.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb01]
 gi|226285178|gb|EEH40744.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb01]
          Length = 813

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 14/76 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+LVGP G+GK+ LA   + ++    F       D + +      + E            
Sbjct: 381 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRE------------ 428

Query: 127 FHIINSIHQYDSSLLM 142
             + N       +++ 
Sbjct: 429 --LFNQARAKAPAIIF 442


>gi|254435163|ref|ZP_05048670.1| hypothetical protein NOC27_2226 [Nitrosococcus oceani AFC27]
 gi|207088274|gb|EDZ65546.1| hypothetical protein NOC27_2226 [Nitrosococcus oceani AFC27]
          Length = 1066

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
           I+ GP+G+GK+ L +    +  +                    VL++  D+ DF +T L 
Sbjct: 19  IITGPAGAGKTHLLSAIRQEVAAL---------------PAWFVLVDMTDIKDFWETVLL 63

Query: 128 HIINSIHQY 136
             +NS+ Q 
Sbjct: 64  GYLNSLQQA 72


>gi|254457233|ref|ZP_05070661.1| AAA ATPase [Campylobacterales bacterium GD 1]
 gi|207086025|gb|EDZ63309.1| AAA ATPase [Campylobacterales bacterium GD 1]
          Length = 395

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 78/208 (37%), Gaps = 28/208 (13%)

Query: 31  SFPRCLG-ISRDDLL----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
            F   L   S DDL+    + +       L + +           GP+G GK+ +A I +
Sbjct: 2   DFTHLLRPNSFDDLVGQEHLSAQNAPLRVLCEKY---TLGHSFFYGPAGCGKTSIARIIA 58

Query: 86  D---------KSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQLFHIINSIHQ 135
                      + S +   + K  +      +KP+L ++++  L  N  ++      + +
Sbjct: 59  KTMDLPFYEFNATSIKIEQLRKIFEQYKNALQKPLLFIDEVHRLAKNQQEVLLP---VME 115

Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195
            +S L++ A T    + +    + SR   + + ++    ++ L  ++ K      +  + 
Sbjct: 116 NNSVLIIGASTENPFFSLTSA-IRSR---SMLFELKHIKNEALLSLLDKALKYADLDCET 171

Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLA 223
               Y++     S   A  ++  ++  +
Sbjct: 172 DAKEYLIAS---SGGDARAMLKLLEFAS 196


>gi|196013470|ref|XP_002116596.1| hypothetical protein TRIADDRAFT_31113 [Trichoplax adhaerens]
 gi|190580872|gb|EDV20952.1| hypothetical protein TRIADDRAFT_31113 [Trichoplax adhaerens]
          Length = 506

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L+GP G+GK+ LA   + ++    F       D + +      +
Sbjct: 109 ILLIGPPGTGKTLLARAVAGEAGVPFFFCSGSEFDEMFVGVGAARV 154


>gi|187935318|ref|YP_001887705.1| DNA replication protein DnaC [Clostridium botulinum B str. Eklund
           17B]
 gi|187723471|gb|ACD24692.1| dnaC family protein [Clostridium botulinum B str. Eklund 17B]
          Length = 326

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 21/119 (17%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----------------LIDTRK 109
           ++  G  GSGK+ L+   S       +  + K+ D +                 ++    
Sbjct: 186 LLFFGNPGSGKTYLSYCLSKAILDKGYLVVYKTSDELIKNLSEIRFNNNYNLESILLNCD 245

Query: 110 PVLLEDIDLLDFND---TQLFHIIN-SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164
            ++++D+     N+   T+LF+IIN  I      L+ T  T P         + SRL  
Sbjct: 246 LLIIDDLGAEHLNEFSITELFNIINKRILNKKKMLISTNLTLPGITKQYTERIASRLLG 304


>gi|166363123|ref|YP_001655396.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166085496|dbj|BAG00204.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 617

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 46/201 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCI 257

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 258 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 317

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211
                 L+       V +  PD    ++++      R   + + +    I +R       
Sbjct: 318 ------LRPGRFDRQVVVDRPDYAGRKEILNVH--SRGKTLAQDVDLDKIARRTP-GFTG 368

Query: 212 AEKLVDKMDNLA-LSRGMGIT 231
           A  L + ++  A L+    +T
Sbjct: 369 A-DLANLLNEAAILAARRNLT 388


>gi|116332057|ref|YP_801775.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280211|sp|Q04Q03|FTSH_LEPBJ RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|116125746|gb|ABJ77017.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 652

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKN 271


>gi|116327328|ref|YP_797048.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120072|gb|ABJ78115.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 652

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKN 271


>gi|115936460|ref|XP_001182384.1| PREDICTED: similar to MGC81266 protein [Strongylocentrotus
            purpuratus]
          Length = 1754

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 65   RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
            +V +L GP G GK+ LA+I +  +        A    S+
Sbjct: 1137 KVALLCGPPGLGKTTLAHIIARHAGYNVIEMNASDDRSL 1175


>gi|86742989|ref|YP_483389.1| Mername-AA223 peptidase [Frankia sp. CcI3]
 gi|86569851|gb|ABD13660.1| membrane protease FtsH catalytic subunit [Frankia sp. CcI3]
          Length = 753

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 40/205 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +    +    
Sbjct: 194 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 253

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++        +L+ A   P      L
Sbjct: 254 IFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 313

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
             L   R     VV    PD    E ++      + I  D  +   I +R       A  
Sbjct: 314 --LRPGRFDRQIVV--DRPDLLGREAILRVHAKGKPIGPDADMMV-IARRTP-GFTGA-D 366

Query: 215 LVDKMDNLALSRGMGITRSLAAEVL 239
           L + ++  AL           +  L
Sbjct: 367 LANVLNEAALLAARS-NLKFISSAL 390


>gi|18479040|gb|AAL73395.1|AF432345_1 26S proteasome regulatory subunit IV [Syntrichia ruralis]
          Length = 446

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++ + +T    +   L    +     ++ E
Sbjct: 224 PLKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRE 275


>gi|24216518|ref|NP_713999.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str.
           56601]
 gi|45656331|ref|YP_000417.1| cell division protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24197827|gb|AAN51017.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str.
           56601]
 gi|45599565|gb|AAS69054.1| cell division protein [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 655

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 216 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFDQGKKN 271


>gi|67924655|ref|ZP_00518065.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
 gi|67853505|gb|EAM48854.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
          Length = 661

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G+GK+ LA   + ++  T FS  A     + + T    + +
Sbjct: 244 VLLVGPPGTGKTLLAKAVAGEADVTFFSISASEFVELFVGTGAARVRD 291


>gi|329298237|ref|ZP_08255573.1| recombination factor protein RarA [Plautia stali symbiont]
          Length = 448

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 34/197 (17%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-----------VLL 113
           +IL GP G+GK+ LA I +   K+   R S +   +  I     +            + +
Sbjct: 54  MILWGPPGTGKTTLAEIIAHYGKADVERISAVTSGVKEIREAIERARQNRQVGRRTILFV 113

Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++   + +    F  HI     +  +   + A T   S+ +    L SR   A V  + 
Sbjct: 114 DEVHRFNKSQQDAFLPHI-----EDGTITFIGATTENPSFELNSA-LLSR---ARVYLLK 164

Query: 172 LPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSL--VFAEKLVDKM----DNLA 223
                 +E+V+ +   D  R       L     +RM   L    A + ++ +    D   
Sbjct: 165 SLTSADIEQVLDQAMQDKTRGYGDSDILLPDNTRRMIAELVNGDARRALNTLEMMADMAE 224

Query: 224 L--SRGMGITRSLAAEV 238
           L       +T  L  EV
Sbjct: 225 LNAQGQRELTPQLLNEV 241


>gi|315926072|ref|ZP_07922272.1| ABC superfamily ATP binding cassette transporter, ABC/membrane
           protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620516|gb|EFV00497.1| ABC superfamily ATP binding cassette transporter, ABC/membrane
           protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 581

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
             LVGPSGSGKS +A + +    + R       +D   I   +  ++E I  +   D  L
Sbjct: 364 TALVGPSGSGKSTVARLIASFWNAGRGIVKIGGIDVQNIPLSQ--IMEHIAYVS-QDNYL 420

Query: 127 FHIINSIHQY 136
           FH+  SI + 
Sbjct: 421 FHL--SIREN 428


>gi|313139717|ref|ZP_07801910.1| AAA family ATPase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132227|gb|EFR49844.1| AAA family ATPase [Bifidobacterium bifidum NCIMB 41171]
          Length = 420

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P + VI  G  G+GK+ LA I ++ + +  +
Sbjct: 204 PIKGVIFTGAPGTGKTHLARIIANVADAQFY 234


>gi|325675047|ref|ZP_08154734.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707]
 gi|325554633|gb|EGD24308.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707]
          Length = 777

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 19/81 (23%)

Query: 22  KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K+K +QL    P+         D          D L + A  QA+         P  V+ 
Sbjct: 150 KSKAKQLSKDMPKTTFADVAGADEAVEELYEIKDFLQNPARYQALG-----AKIPKGVL- 203

Query: 69  LVGPSGSGKSCLANIWSDKSR 89
           L GP G+GK+ LA   + ++ 
Sbjct: 204 LYGPPGTGKTLLARAVAGEAG 224


>gi|259046802|ref|ZP_05737203.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Granulicatella adiacens ATCC 49175]
 gi|259036570|gb|EEW37825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Granulicatella adiacens ATCC 49175]
          Length = 413

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 112 ICLIGPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 158


>gi|296812297|ref|XP_002846486.1| chromosome transmission fidelity protein 18 [Arthroderma otae CBS
           113480]
 gi|238841742|gb|EEQ31404.1| chromosome transmission fidelity protein 18 [Arthroderma otae CBS
           113480]
          Length = 954

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           ++++L GP G GK+ LA+I + +  
Sbjct: 258 KILLLTGPPGLGKTTLAHICAKQVG 282


>gi|308081381|ref|NP_001183829.1| hypothetical protein LOC100502422 [Zea mays]
 gi|238014784|gb|ACR38427.1| unknown [Zea mays]
          Length = 475

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 58  LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 104


>gi|224065699|ref|XP_002301927.1| precursor of protein cell division protease ftsh-like protein
           [Populus trichocarpa]
 gi|222843653|gb|EEE81200.1| precursor of protein cell division protease ftsh-like protein
           [Populus trichocarpa]
          Length = 704

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 287 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 333


>gi|170701161|ref|ZP_02892134.1| AAA ATPase [Burkholderia ambifaria IOP40-10]
 gi|170133942|gb|EDT02297.1| AAA ATPase [Burkholderia ambifaria IOP40-10]
          Length = 466

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 22/63 (34%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             R +++ GP+GSGK+ LA               A      +I    P++  D       
Sbjct: 180 AGRPLLIHGPAGSGKTFLAERLGALMGGHVPVPHAIYAAGEVIQIYDPIVHVDAPSQADG 239

Query: 123 DTQ 125
            + 
Sbjct: 240 QSA 242


>gi|167907158|ref|ZP_02494363.1| putative insertion sequence ATP-binding protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 269

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 46/108 (42%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------------ 109
           ++ +G  G+GK+ LA  +        ++  RF    + ++ + ++               
Sbjct: 100 IVFIGGPGTGKTHLATAFGIEAVQQHAKRVRFFTTVELVNQLELEKAAGKAGQIANRLMY 159

Query: 110 --PVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
              V+L+++  L F  T    LFH+ + +++  +S+++T       W 
Sbjct: 160 VDAVILDELGYLPFTQTGGALLFHLFSKLYER-TSIIVTTNLSFTEWS 206


>gi|167520500|ref|XP_001744589.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776920|gb|EDQ90538.1| predicted protein [Monosiga brevicollis MX1]
          Length = 388

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 165 PPKGCLLYGPPGTGKTLLARAVASNVDANFLKVVSSAIVDKYIGESARLIRE 216


>gi|160942947|ref|ZP_02090186.1| hypothetical protein FAEPRAM212_00424 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445848|gb|EDP22851.1| hypothetical protein FAEPRAM212_00424 [Faecalibacterium prausnitzii
           M21/2]
          Length = 351

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 61/234 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   ++L GP G GK+ LA I +++           +++           L++ D+L  +
Sbjct: 58  PVDHILLYGPPGLGKTTLAGIIANEMGVQIRITSGPAIEKPGDLAALLTNLQEGDVLFID 117

Query: 123 DTQLFHIINSIHQYDSSL----------LMTARTFPVS-WGVCLPD-------------- 157
           +     I     Q +  L          +M  +        + LP               
Sbjct: 118 E-----IHRLSRQVEEVLYPALEDYALDIMIGKGPSAQSIRINLPRFTLVGATTRAGQIT 172

Query: 158 --LCSRLKAATVVKISLPDDDFLEKVIVKMFA--DRQIFID------------KKLAAYI 201
             L  R      +++  PD+  L ++I++     D+ I  +             ++A   
Sbjct: 173 GPLRDRFGVLLKLELYSPDE--LSRIIMRSAGILDQPITPEGAYELAKCSRGTPRVANRF 230

Query: 202 VQRMERSLVFAE--KLVDKMDNLALSRGM---------GITRSLAAEVLKETQQ 244
           ++R+ R         ++D+ D   L              + RSL   +++    
Sbjct: 231 LKRI-RDFATVLGDGIIDQ-DVALLGLKRMDVDALGLDELDRSLLRAIIEMYNG 282


>gi|156841413|ref|XP_001644080.1| hypothetical protein Kpol_1014p42 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114714|gb|EDO16222.1| hypothetical protein Kpol_1014p42 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 570

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 36/212 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +IL GP G GK+ LA + + ++     +       +   +T++   + D    DF  T
Sbjct: 161 PSMILWGPPGVGKTSLARLLTKEATKNGTNYHLIETSATKANTQELRSIFDKAKKDFQLT 220

Query: 125 Q----LF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAAT 166
           +    LF    H  N           +    +L+  T              L SR     
Sbjct: 221 KRRIVLFIDEIHRFNKAQQDLLLPHVENGDIILIGATTENPSFQLNNA---LISR---CH 274

Query: 167 VVKISLPDDDFLEKVIVKMFAD----RQ--------IFIDKKLAAYIVQRMERSLVFAEK 214
           +  +     + +  V+ +  A     R+        + + + +  YI          A  
Sbjct: 275 IFVLEKLSSNEICIVLSRGIALLNKCRKLIWKVKIPLTLPRSVLEYIADVSVGDTRRAIN 334

Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           +++ ++         IT     E++K     +
Sbjct: 335 ILEMIEISTRQITTEITSDTVKEIVKSNSSKE 366


>gi|71034075|ref|XP_766679.1| AAA family ATPase [Theileria parva strain Muguga]
 gi|68353636|gb|EAN34396.1| AAA family ATPase, putative [Theileria parva]
          Length = 727

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           ++L GP G GK+ LA   S++  +   S   K    + I  R  +L
Sbjct: 480 ILLYGPPGCGKTLLAKAISNECNANFISIKGKLTHKLHILPRPEIL 525



 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P++ V+L GP GSGK+ LA   + +     F   A  +
Sbjct: 205 PTKGVLLHGPPGSGKTKLAEAIAGEIGCPFFRVAATEI 242


>gi|326512682|dbj|BAJ99696.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 808

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 49/145 (33%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110
           P + ++L GP G+GK+ LA   ++++ ++             + +  K++ ++     K 
Sbjct: 498 PCKGILLFGPPGTGKTMLAKALANEAGASFLNISLSTIMSKYYGDAEKTIRALFSLATKL 557

Query: 111 ----VLLEDIDLLDF-----NDTQL-------F--H----IINSIHQYDSSLLMTARTFP 148
               + ++++D L       N+ +L       F  H    + N     +  L++ A   P
Sbjct: 558 APAIIFVDEVDSLLGQRDQRNENELPRRIKNEFMTHWDGLLSN---SNERILVLAATNRP 614

Query: 149 VSWG------------VCLPDLCSR 161
                           V LP L SR
Sbjct: 615 FDLDEAIVRRFEHRIMVGLPTLESR 639


>gi|327308990|ref|XP_003239186.1| vacuolar sorting protein 4b [Trichophyton rubrum CBS 118892]
 gi|326459442|gb|EGD84895.1| vacuolar sorting protein 4b [Trichophyton rubrum CBS 118892]
          Length = 836

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ +A   + +S+ST FS  A SL S
Sbjct: 580 PARGMLLFGPPGTGKTMIARAVATESQSTFFSVSASSLAS 619


>gi|325684388|gb|EGD26557.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 417

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 112 IALIGPTGSGKTYLAQTLA------RILNVPFAIADATTLTEAGYVGEDVENI 158


>gi|332163459|ref|YP_004300036.1| putative NTP-binding protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667689|gb|ADZ44333.1| Putative NTP-binding protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 249

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 21/107 (19%)

Query: 65  RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK----------- 109
           R +I VG  G+GK+ LA       +      RF N+   ++ + +D              
Sbjct: 99  RNIIFVGGPGTGKTHLATALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 158

Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
              ++L+++  L F+      LFH+I+ +H++ +S+++T       W
Sbjct: 159 LDLIVLDELGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 204


>gi|325125526|gb|ADY84856.1| ATP-dependent protease [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 417

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 112 IALIGPTGSGKTYLAQTLA------RILNVPFAIADATTLTEAGYVGEDVENI 158


>gi|325104948|ref|YP_004274602.1| Holliday junction DNA helicase RuvB [Pedobacter saltans DSM 12145]
 gi|324973796|gb|ADY52780.1| Holliday junction DNA helicase RuvB [Pedobacter saltans DSM 12145]
          Length = 337

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ L++I +++            LD           L+  D+L  +
Sbjct: 54  PLDHVLLHGPPGLGKTTLSHIIANEMGVGIKITSGPVLDKPGDLAGLLTNLDAGDILFID 113

Query: 123 DT 124
           + 
Sbjct: 114 EI 115


>gi|312134959|ref|YP_004002297.1| holliday junction DNA helicase ruvb [Caldicellulosiruptor
           owensensis OL]
 gi|311775010|gb|ADQ04497.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor
           owensensis OL]
          Length = 338

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LANI +++       +I  +    +      V +    L +  
Sbjct: 50  PLDHVLLYGPPGLGKTTLANIIANEMG----VDIKVTSGPAIERAGDLVAI----LTNIG 101

Query: 123 DTQ-LF----HIINSIHQY 136
           +   LF    H +N   + 
Sbjct: 102 ENNILFIDEIHRLNRTIEE 120


>gi|302521006|ref|ZP_07273348.1| cell division protein FtsH [Streptomyces sp. SPB78]
 gi|333025313|ref|ZP_08453377.1| putative cell division protein FtsH [Streptomyces sp. Tu6071]
 gi|302429901|gb|EFL01717.1| cell division protein FtsH [Streptomyces sp. SPB78]
 gi|332745165|gb|EGJ75606.1| putative cell division protein FtsH [Streptomyces sp. Tu6071]
          Length = 682

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    +S        + +      + +  +    N   +
Sbjct: 207 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 266


>gi|302391488|ref|YP_003827308.1| Holliday junction DNA helicase subunit RuvB [Acetohalobium
           arabaticum DSM 5501]
 gi|302203565|gb|ADL12243.1| Holliday junction DNA helicase subunit RuvB [Acetohalobium
           arabaticum DSM 5501]
          Length = 333

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI +++           +++           L   D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLANIIAEEMGVNIKITSGPAIERPGDLAAILTNLNPNDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N + + 
Sbjct: 114 -HRLNRMVEE 122


>gi|300811984|ref|ZP_07092441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497045|gb|EFK32110.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 417

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 112 IALIGPTGSGKTYLAQTLA------RILNVPFAIADATTLTEAGYVGEDVENI 158


>gi|297811665|ref|XP_002873716.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319553|gb|EFH49975.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 685

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 14/70 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    FS        + +      + +            
Sbjct: 259 VLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRD------------ 306

Query: 127 FHIINSIHQY 136
             + N     
Sbjct: 307 --LFNRAKAN 314


>gi|289423659|ref|ZP_06425458.1| export ABC transporter [Peptostreptococcus anaerobius 653-L]
 gi|289155909|gb|EFD04575.1| export ABC transporter [Peptostreptococcus anaerobius 653-L]
          Length = 585

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKS 88
           P ++  LVGPSG GKS LA++ + + 
Sbjct: 356 PGKMTALVGPSGCGKSTLASVIAGEY 381


>gi|284929383|ref|YP_003421905.1| RecA protein [cyanobacterium UCYN-A]
 gi|284809827|gb|ADB95524.1| RecA protein [cyanobacterium UCYN-A]
          Length = 345

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 64  SRVVILVGPSGSGKSCL-ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            R++ + GP  SGK+ L  +  ++  ++   +      +  L  +   VL  DID L
Sbjct: 62  GRIIEIYGPESSGKTTLTLHAIAEVQKAGGVAAF-VDAEHALDPSYASVLGVDIDNL 117


>gi|269928564|ref|YP_003320885.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943109|sp|D1C8C0|FTSH4_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 4
 gi|269787921|gb|ACZ40063.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 658

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           R ++LVGP G+GK+ LA   + ++    FS  A     + +      + +  +  
Sbjct: 237 RGILLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEMFVGVGASRVRDLFERA 291


>gi|241767445|ref|ZP_04765140.1| IstB domain protein ATP-binding protein [Acidovorax delafieldii
           2AN]
 gi|241361772|gb|EER58055.1| IstB domain protein ATP-binding protein [Acidovorax delafieldii
           2AN]
          Length = 269

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 23/108 (21%)

Query: 67  VILVGPSGSGKSCLANIW--------SDKSRSTRFSNIAKSLD-----------SILIDT 107
           V+LVG  G+GK+ LA             + R     ++  +L+           ++ +  
Sbjct: 101 VVLVGGPGTGKTHLATAIGVSGITRHGKRVRFFSTVDLVNALEQEKAQGKAGRIALSLLR 160

Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
              V+L+++  L F+      LFH+++ ++++ +S+++T       W 
Sbjct: 161 MDLVILDELGYLPFSQAGGALLFHLLSRLYEH-TSVMITTNLDFAEWS 207


>gi|251796464|ref|YP_003011195.1| Vesicle-fusing ATPase [Paenibacillus sp. JDR-2]
 gi|247544090|gb|ACT01109.1| Vesicle-fusing ATPase [Paenibacillus sp. JDR-2]
          Length = 499

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           P + ++L GP G+GK+ LA   +  + S   +        + +    
Sbjct: 103 PMKGILLTGPPGTGKTLLAKAAAHYTDSIYLAASGSEFVEMYVGVGA 149


>gi|168698683|ref|ZP_02730960.1| Holliday junction DNA helicase RuvB [Gemmata obscuriglobus UQM
           2246]
          Length = 318

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 29/161 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND--- 123
            +L GP G GK+  A + + +        + +++ S        +  +D D++  ++   
Sbjct: 45  ALLCGPPGCGKTQTAKVIAQEMAGEFQEVLGQAIQSPADLNALLLGAKDRDVILLDEAHE 104

Query: 124 ------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC--------------LPDLCSRLK 163
                 T L+            LL T    P +  +               L  L  R++
Sbjct: 105 LDREYQTALY----LAIDQRRVLLQTKGRTPQAIPLADFTLLLATTDEFKLLQPLRDRMR 160

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204
                     ++  L ++I +  A     +D  +   I  R
Sbjct: 161 LCLRFGFYSAEE--LAELIRQRAAALAWDVDVNVYRPIAAR 199


>gi|104773862|ref|YP_618842.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422943|emb|CAI97605.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 417

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 112 IALIGPTGSGKTYLAQTLA------RILNVPFAIADATTLTEAGYVGEDVENI 158


>gi|72389873|ref|XP_845231.1| proteasome regulatory ATPase subunit 3 [Trypanosoma brucei TREU927]
 gi|9651737|gb|AAF91245.1|AF227501_1 proteasome regulatory ATPase subunit 3 [Trypanosoma brucei]
 gi|62359939|gb|AAX80364.1| proteasome regulatory ATPase subunit 3 [Trypanosoma brucei]
 gi|70801766|gb|AAZ11672.1| proteasome regulatory ATPase subunit 3 [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
 gi|261328623|emb|CBH11601.1| proteasome regulatory ATPase subunit 3, putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 403

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109
           P R V+L GP G+GK+ L    +  + +   S +        +    
Sbjct: 182 PPRGVLLYGPPGTGKTMLVKAVAHHTNAAFISVVGSEFVQKYLGEGP 228


>gi|29834088|ref|NP_828722.1| transposase [Streptomyces avermitilis MA-4680]
 gi|29611213|dbj|BAC75257.1| putative IS21 family ISMt3-like transposase [Streptomyces
           avermitilis MA-4680]
          Length = 269

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 45/151 (29%)

Query: 30  FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           F F     + R+        D +                      VI +GP G+GK+ LA
Sbjct: 89  FDFDHQRSVKREVIAHLGTLDFVAGKEN-----------------VIFLGPPGTGKTHLA 131

Query: 82  ---NIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND 123
               I + ++        A    + L +  +                ++++++  + F  
Sbjct: 132 TGLGIRACQAGHRVAFGTAAQWVARLAEAHQAGRLSDELTRLGRIPLIVVDEVGYIPFEP 191

Query: 124 TQ--LFHIINSIHQYDSSLLMTARTFPVSWG 152
               LF    S     +S+++T+      WG
Sbjct: 192 EAANLFFQFISGRYERASVIVTSNKPFGRWG 222


>gi|116513869|ref|YP_812775.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116093184|gb|ABJ58337.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 417

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 112 IALIGPTGSGKTYLAQTLA------RILNVPFAIADATTLTEAGYVGEDVENI 158


>gi|328866591|gb|EGG14975.1| ATP-dependent metalloprotease [Dictyostelium fasciculatum]
          Length = 691

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 25/116 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRK--- 109
           R ++L G  G+GK+ LA   + ++                    AK +  +    R    
Sbjct: 314 RGILLSGEPGTGKTLLARAIAGEAGVPFLYTSGSSFDEKYIGVGAKRVRELFDLARSQQP 373

Query: 110 -PVLLEDIDLLDFN------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
             + +++ID    N      +  L  +   ++   Q +  +++ A   P S    L
Sbjct: 374 CIIFIDEIDAAGRNRISSRFNETLLQLLTEMDGFAQENKIMVIGATNSPESLDAAL 429


>gi|329955582|ref|ZP_08296490.1| IstB-like ATP-binding protein [Bacteroides clarus YIT 12056]
 gi|328525985|gb|EGF53009.1| IstB-like ATP-binding protein [Bacteroides clarus YIT 12056]
          Length = 258

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 24/116 (20%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI---DTRKPVLL------- 113
            R +IL G  G+GK+ LA      + +  +S +  S+  +L    + R  + L       
Sbjct: 107 GRNLILYGNPGTGKTHLATALGIAACNAGYSVLFTSVPRLLTQIRECRNAMTLRALENKF 166

Query: 114 EDIDLLDFND-----------TQLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
           E  D++  ++             LF H+  S+     + ++T       W   + D
Sbjct: 167 ERYDMVICDEFGYVSCDKAGAEMLFNHL--SLRTDKKTTVITTNLAFNRWDEIIAD 220


>gi|326531442|dbj|BAJ97725.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 478

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 26/150 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P++ ++L GP G+GK+ LA   + +S +T F+  A SL S  +   + ++          
Sbjct: 238 PAKGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLV---------- 287

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP---DLCSRLKAATVVKIS----LPDD 175
              LF     +       ++            L    D   RLK+  +++       PDD
Sbjct: 288 -RTLF----MVAVERQPSVIFMDEIDSVMSTRLASENDASRRLKSEFLIQFDGVTSNPDD 342

Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205
                VIV    ++   +D  +   +V+R+
Sbjct: 343 ----LVIVIGATNKPQELDDAVLRRLVKRI 368


>gi|323346208|gb|EGA80498.1| Yta6p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 754

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ +A   + +S ST FS  A SL S  +   + ++
Sbjct: 503 PVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLV 552


>gi|312876101|ref|ZP_07736089.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797087|gb|EFR13428.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 616

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 204 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKRN 259


>gi|312792835|ref|YP_004025758.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179975|gb|ADQ40145.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 616

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 204 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKRN 259


>gi|312623034|ref|YP_004024647.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203501|gb|ADQ46828.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 616

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 204 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKRN 259


>gi|312128219|ref|YP_003993093.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778238|gb|ADQ07724.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 616

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 204 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKRN 259


>gi|302871266|ref|YP_003839902.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574125|gb|ADL41916.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 616

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 204 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKRN 259


>gi|302553170|ref|ZP_07305512.1| cell division protein FtsH [Streptomyces viridochromogenes DSM
           40736]
 gi|302470788|gb|EFL33881.1| cell division protein FtsH [Streptomyces viridochromogenes DSM
           40736]
          Length = 669

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    +S        + +      + +  +    N   +
Sbjct: 197 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 256


>gi|294816224|ref|ZP_06774867.1| putative enterobactin-iron ABC transport system, ATP-binding
           protein [Streptomyces clavuligerus ATCC 27064]
 gi|294328823|gb|EFG10466.1| putative enterobactin-iron ABC transport system, ATP-binding
           protein [Streptomyces clavuligerus ATCC 27064]
          Length = 318

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R   LVGP+GSGKS L        R         +LD    ++ + V L         
Sbjct: 78  PGRATALVGPNGSGKSTLLRALCRLHR---VDGGRVTLDGPGGESERDVALLSSHEFA-R 133

Query: 123 DTQLF 127
           +  LF
Sbjct: 134 EVTLF 138


>gi|294055980|ref|YP_003549638.1| AAA ATPase central domain protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293615313|gb|ADE55468.1| AAA ATPase central domain protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 450

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 29/174 (16%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS------TRFSNIAK-----SLDSILIDTRKPVLL 113
             +I  GP G GK+ +A + + ++ S         SN+A+      +       R  + +
Sbjct: 61  GSLIFYGPPGCGKTSMAEVIAAETSSKFVRINAVLSNVAELREILRMARYESAARTILFI 120

Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
           ++I   + +   L  ++  + +  +  L+ A T    + V  P L SR   + + ++   
Sbjct: 121 DEIHRFNKSQQDL--LLPDV-EAGNIRLIGATTHNPGFYVNAP-LLSR---SHLFRLEPV 173

Query: 174 DDDFLEKVIVKMFAD--RQIFIDK---------KLAAYIVQRMERSLVFAEKLV 216
             + + +V+ +   D  R +   +          +A +    + R+L   E LV
Sbjct: 174 AIECVAQVLERAMKDEARGLASHRCEAEEAVFVAVAEFCGGDLRRALNALETLV 227


>gi|294944253|ref|XP_002784163.1| 26S proteosome regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239897197|gb|EER15959.1| 26S proteosome regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 601

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P R ++L GP G+GK+  A   + +S 
Sbjct: 354 PFRHLMLYGPPGTGKTLFARTLARQSG 380


>gi|229825021|ref|ZP_04451090.1| hypothetical protein GCWU000182_00371 [Abiotrophia defectiva ATCC
           49176]
 gi|229790768|gb|EEP26882.1| hypothetical protein GCWU000182_00371 [Abiotrophia defectiva ATCC
           49176]
          Length = 333

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 74/206 (35%), Gaps = 37/206 (17%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G GK+ LA I +++           +++           L++ D+L  +
Sbjct: 56  PLDHVLLYGPPGLGKTTLAGIIANEMGVHIKITSGPAIEKPGDVAAILNNLKEGDVLFVD 115

Query: 123 DTQLFHIINSIHQY----------------------------DSSLLMTARTFPVSWGVC 154
           +    H +N   +                                 L+ A T        
Sbjct: 116 EI---HRLNRQVEEVLYPAMEDFAIDVVIGKGATSKSIRLELPKFTLIGATTRAGMLSAP 172

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L D     +   V ++   +   LE +I++      + I+ + A  + +R   +   A +
Sbjct: 173 LRD-----RFGVVNRLEYYNLTELETIIMRSAKVLGVKIENEAALEMAKRSRGTPRLANR 227

Query: 215 LVDKM-DNLALSRGMGITRSLAAEVL 239
           L+ ++ D   +     +T+ +AAEVL
Sbjct: 228 LLKRVRDFAEVKYDGKLTKEVAAEVL 253


>gi|311740143|ref|ZP_07713975.1| ATP-dependent metalloprotease FtsH [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304698|gb|EFQ80769.1| ATP-dependent metalloprotease FtsH [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 785

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 67/198 (33%), Gaps = 43/198 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSP 260

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     +  +L+ A   P     
Sbjct: 261 CIIFVDEIDAVGRQRGSGTGGGHDEREQTLNQLLVEMDGFGDREGVILIAATNRPDILDP 320

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       + ++ PD    E+++     ++ +  +  +A  + +R    + 
Sbjct: 321 AL------LRPGRFDRQIPVTNPDLAGREQILRVHAKNKPLAEEVDVAQ-LAKRTA-GMS 372

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  AL    
Sbjct: 373 GA-DLANVLNEAALLTAR 389


>gi|222086152|ref|YP_002544684.1| hypothetical protein Arad_2605 [Agrobacterium radiobacter K84]
 gi|221723600|gb|ACM26756.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 499

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFND 123
            +++ G SGSGKS L     ++S       I         L D    V+++     +  +
Sbjct: 21  RLLVQGNSGSGKSHLLRRLLEQSAQWVQQVIIDPEGDFVTLADKFGHVVVD----GERTE 76

Query: 124 TQLFHIINSIHQYDSSLLMT 143
            +L  I N I Q+  S ++T
Sbjct: 77  AELAGIANRIRQHRVSCVLT 96


>gi|239820739|ref|YP_002947924.1| phosphonate C-P lyase system protein PhnK [Variovorax paradoxus
          S110]
 gi|239805592|gb|ACS22658.1| phosphonate C-P lyase system protein PhnK [Variovorax paradoxus
          S110]
          Length = 263

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSR 89
          WP  V+ +VG SGSGKS L +  + +SR
Sbjct: 35 WPGEVLAVVGESGSGKSTLLDAIAARSR 62


>gi|222528657|ref|YP_002572539.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM
           6725]
 gi|310943117|sp|B9MPK5|FTSH_ANATD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|222455504|gb|ACM59766.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM
           6725]
          Length = 616

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 204 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKRN 259


>gi|254391857|ref|ZP_05007051.1| transport protein [Streptomyces clavuligerus ATCC 27064]
 gi|326444555|ref|ZP_08219289.1| ABC transporter related protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197705538|gb|EDY51350.1| transport protein [Streptomyces clavuligerus ATCC 27064]
          Length = 291

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R   LVGP+GSGKS L        R         +LD    ++ + V L         
Sbjct: 51  PGRATALVGPNGSGKSTLLRALCRLHR---VDGGRVTLDGPGGESERDVALLSSHEFA-R 106

Query: 123 DTQLF 127
           +  LF
Sbjct: 107 EVTLF 111


>gi|254419031|ref|ZP_05032755.1| Holliday junction DNA helicase RuvB [Brevundimonas sp. BAL3]
 gi|196185208|gb|EDX80184.1| Holliday junction DNA helicase RuvB [Brevundimonas sp. BAL3]
          Length = 343

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 31/203 (15%)

Query: 67  VILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDL 118
           V+L GP G GK+ LA I +       ++ S      A  L +IL  ++ R  + +++I  
Sbjct: 54  VLLFGPPGLGKTTLAQIVARELGVGFRATSGPILAKAGDLAAILTNLEPRDVLFIDEIHR 113

Query: 119 LDFNDTQLF------HIINSIHQYDSSL-----------LMTARTFPVSWGVCLPDLCSR 161
           L  N  ++       H+++ I     S            L+ A T        L D   R
Sbjct: 114 LSPNVEEILYPAMEDHVLDLIIGEGPSARSVRIDLAPFTLVGATTRAGLLATPLRD---R 170

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220
                 ++   PD+  L  V+          ID+  A  I  R   +   A +L+ ++ D
Sbjct: 171 FGIPLRLEFYTPDE--LTAVVRGTARKMGAAIDEAGAREIASRARGTPRIAGRLLRRVRD 228

Query: 221 NLALSRGMGITRSLAAEVLKETQ 243
             +      I++ +AA+ L   +
Sbjct: 229 FASADGAETISKLVAAKALARLE 251


>gi|261407190|ref|YP_003243431.1| ABC transporter-like protein [Paenibacillus sp. Y412MC10]
 gi|261283653|gb|ACX65624.1| ABC transporter related protein [Paenibacillus sp. Y412MC10]
          Length = 227

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 16/61 (26%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V ++GPSGSGKS L ++                L  +   T   V +E+ D+   ++T+
Sbjct: 35  FVAIIGPSGSGKSTLLHL----------------LGGVDRPTSGKVFVENTDIYALDETR 78

Query: 126 L 126
           L
Sbjct: 79  L 79


>gi|164663143|ref|XP_001732693.1| hypothetical protein MGL_0468 [Malassezia globosa CBS 7966]
 gi|159106596|gb|EDP45479.1| hypothetical protein MGL_0468 [Malassezia globosa CBS 7966]
          Length = 382

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 52/194 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112
           V+L GP G+GK+ LA   +    +     +A ++    I     ++              
Sbjct: 163 VLLYGPPGTGKTLLARAVAATLDTNFLKVVASAIVDKYIGESARLVREMFAYAKTKEPCI 222

Query: 113 --LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCL 155
             +++ID +                  L  ++N      Q   + ++ A   P +    L
Sbjct: 223 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDQLGKTKVIMATNRPDTLDPAL 282

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+   +   ++I LP++    +++        I         I +R E      
Sbjct: 283 ------LRPGRIDRKIEIPLPNEQSRLEILK-------IHTRP-----IAKRDELDYEAI 324

Query: 213 EKLVDKMDNLALSR 226
            KL D  +   L  
Sbjct: 325 VKLSDGFNGADLRN 338


>gi|151942722|gb|EDN61068.1| AAA ATPase [Saccharomyces cerevisiae YJM789]
 gi|256270536|gb|EEU05720.1| Yta6p [Saccharomyces cerevisiae JAY291]
 gi|323331231|gb|EGA72649.1| Yta6p [Saccharomyces cerevisiae AWRI796]
          Length = 754

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P R ++L GP G+GK+ +A   + +S ST FS  A SL S  +   + ++
Sbjct: 503 PVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLV 552


>gi|157375266|ref|YP_001473866.1| recombination factor protein RarA [Shewanella sediminis HAW-EB3]
 gi|157317640|gb|ABV36738.1| AAA ATPase, central domain protein [Shewanella sediminis HAW-EB3]
          Length = 443

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 39/198 (19%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121
           ++  GP G+GK+ LA + ++ + +   R S +   +  I         +E    +     
Sbjct: 52  MMFWGPPGTGKTTLAELVANYANAHVERISAVTSGVKEIRT------AIEHAKNVAESRG 105

Query: 122 NDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATV 167
             T LF    H  N   Q        D +++    T              L SR   A V
Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFVGATTENPSFEINNA---LLSR---ARV 159

Query: 168 VKISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220
             I    +D +  ++ +   D       R++ I   +A  +    E     A  L++ M 
Sbjct: 160 YLIKKLTNDEIVHIVRQALTDEERGLGKRKLLIPDNVALKLANVSEGDARKALNLIELMS 219

Query: 221 NLALSRGMGITRSLAAEV 238
           ++ L+ G   +  +  EV
Sbjct: 220 DM-LADGGSFSEEMIIEV 236


>gi|146342770|ref|YP_001207818.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278]
 gi|146195576|emb|CAL79603.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo
           protease) [Bradyrhizobium sp. ORS278]
          Length = 618

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++LVGP G+GK+ LA   + ++    FS        + +      + +
Sbjct: 198 ILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEMFVGVGAARVRD 245


>gi|146296233|ref|YP_001180004.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409809|gb|ABP66813.1| membrane protease FtsH catalytic subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 615

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 203 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKRN 258


>gi|115445841|ref|NP_001046700.1| Os02g0325100 [Oryza sativa Japonica Group]
 gi|46390257|dbj|BAD15686.1| putative 26S proteasome regulatory particle triple-A ATPase
           subunit3 [Oryza sativa Japonica Group]
 gi|113536231|dbj|BAF08614.1| Os02g0325100 [Oryza sativa Japonica Group]
 gi|215701090|dbj|BAG92514.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 419

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   +  + +     +        +    P ++ D+  L 
Sbjct: 199 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL-GEGPRMVRDVFRLA 255


>gi|120552969|ref|YP_957320.1| IstB ATP binding domain-containing protein [Marinobacter aquaeolei
           VT8]
 gi|120554222|ref|YP_958573.1| IstB ATP binding domain-containing protein [Marinobacter aquaeolei
           VT8]
 gi|120555132|ref|YP_959483.1| IstB ATP binding domain-containing protein [Marinobacter aquaeolei
           VT8]
 gi|120322818|gb|ABM17133.1| IstB domain protein ATP-binding protein [Marinobacter aquaeolei
           VT8]
 gi|120324071|gb|ABM18386.1| IstB domain protein ATP-binding protein [Marinobacter aquaeolei
           VT8]
 gi|120324981|gb|ABM19296.1| IstB domain protein ATP-binding protein [Marinobacter aquaeolei
           VT8]
          Length = 246

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 67  VILVGPSGSGKSCLANIW---SDKSRSTRFSNIAKSLDSIL---------------IDTR 108
           ++ +GP G GK+ LA      + ++        A  L   L               +   
Sbjct: 103 LVFIGPPGVGKTHLAIGIGHKAVEAGYRVLFRNALDLVEELELAEMKGELKKRVSQLAKY 162

Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
             ++++++  L         LF +INS+++Y  S+++T      SWG
Sbjct: 163 DLLIIDELGYLPMTRQARYNLFQLINSLYEY-RSIILTTNKDFTSWG 208


>gi|115361031|ref|YP_778168.1| AAA ATPase [Burkholderia ambifaria AMMD]
 gi|115286359|gb|ABI91834.1| AAA ATPase [Burkholderia ambifaria AMMD]
          Length = 466

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 22/63 (34%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
             R +++ GP+GSGK+ LA               A      +I    P++  D       
Sbjct: 180 AGRPLLIHGPAGSGKTFLAERLGALMGGHVPVPHAIYAAGEVIQIYDPIVHVDAPSQADG 239

Query: 123 DTQ 125
            + 
Sbjct: 240 QSA 242


>gi|332019575|gb|EGI60054.1| ATPase WRNIP1 [Acromyrmex echinatior]
          Length = 393

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 12/82 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             +I  GP G GK+ LANI +  SR    +N+   + ++   +     ++D   +  + +
Sbjct: 32  PSMIFWGPPGCGKTSLANIIACLSRKLTSNNVH--IVNLSAASSGVKSIKDAVTMAKDKS 89

Query: 125 Q------LF----HIINSIHQY 136
           +      +F    H  N + Q 
Sbjct: 90  KFGCRTIVFMDEIHCFNKLQQD 111


>gi|330469648|ref|YP_004407391.1| ATP-dependent protease ATP-binding subunit ClpX [Verrucosispora
           maris AB-18-032]
 gi|328812619|gb|AEB46791.1| ATP-dependent protease ATP-binding subunit ClpX [Verrucosispora
           maris AB-18-032]
          Length = 431

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+G GK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 118 ILLLGPTGCGKTHLAQTLA------RMLNVPFAIADATALTEAGYVGEDVENI 164


>gi|325290231|ref|YP_004266412.1| Holliday junction DNA helicase subunit RuvB [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965632|gb|ADY56411.1| Holliday junction DNA helicase subunit RuvB [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 333

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ LA+I + +      +    +++           LE  D+L  ++ 
Sbjct: 55  VLLYGPPGLGKTTLAHIIASEMGVNIRTTSGPAIERPGDLAALLTSLEPRDVLFIDEI 112


>gi|300087021|gb|ADJ67787.1| IstB ATP binding domain-containing protein [Ochrobactrum lupini]
          Length = 219

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 26/120 (21%)

Query: 53  VRLIDSWPSWPSRVVILVGPSGSGKSCLANIW---SDKSR----------------STRF 93
           +R I+   +      +L+GPSG GK+ LA      + ++                 + R 
Sbjct: 57  LRFIERSQN-----AVLLGPSGVGKTHLAIAIGYAATQAGIKTKFITAADLMLQLEAARR 111

Query: 94  SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI--HQYDSSLLMTARTFPVSW 151
                ++    I   + +++++I  L  +  Q  H    +       S+++T+      W
Sbjct: 112 QERYDAVLRHNILGPRLLIVDEIGYLPLSGDQASHFFQIVAKRYERGSMILTSNLPFTQW 171


>gi|298526413|ref|ZP_07013822.1| transposase [Mycobacterium tuberculosis 94_M4241A]
 gi|298496207|gb|EFI31501.1| transposase [Mycobacterium tuberculosis 94_M4241A]
          Length = 238

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 29/131 (22%)

Query: 47  SAIEQAVRLIDSWPSW----PSRVVILVGPSGSGKSCLA---NIWSDKSRSTRFSNIAKS 99
           ++      +   W  W    P+       P G+GK+ LA    I + ++        A  
Sbjct: 63  ASNATPSHI---WAPWISSPPAITSCFWAPPGTGKTHLAVGLAIRACQAGHRVLFATAAE 119

Query: 100 LDSILIDTRKP---------------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLL 141
             + L +                   ++++++  + F        F ++ S     +SL+
Sbjct: 120 WVARLAEAHHAGRIYAELTRLCRYPLLVVDEVGYIPFEPEAANLFFQLV-SSRYERASLI 178

Query: 142 MTARTFPVSWG 152
           +T+      WG
Sbjct: 179 VTSNKAFGRWG 189


>gi|227495368|ref|ZP_03925684.1| ATP-dependent protease ATP-binding subunit [Actinomyces coleocanis
           DSM 15436]
 gi|226831122|gb|EEH63505.1| ATP-dependent protease ATP-binding subunit [Actinomyces coleocanis
           DSM 15436]
          Length = 417

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +   +   +     A +    + +  + +LL+ I   D +
Sbjct: 115 ILLLGPTGTGKTHLARSLARLLQVPFSIVDATALTEAGYVGEDVENILLKLIQDADGD 172


>gi|293334905|ref|NP_001169612.1| hypothetical protein LOC100383493 [Zea mays]
 gi|224030381|gb|ACN34266.1| unknown [Zea mays]
          Length = 849

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++ + ++  +
Sbjct: 534 PCRGILLFGPPGTGKTMLAKAIANDAGASFIN 565


>gi|242808787|ref|XP_002485236.1| proteasome regulatory particle subunit Rpt4, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218715861|gb|EED15283.1| proteasome regulatory particle subunit Rpt4, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 393

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIRE 221


>gi|293331089|ref|NP_001167681.1| 26S protease regulatory subunit 6B [Zea mays]
 gi|195626868|gb|ACG35264.1| 26S protease regulatory subunit 6B [Zea mays]
          Length = 420

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   +  + +     +        +    P ++ D+  L 
Sbjct: 200 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL-GEGPRMVRDVFRLA 256


>gi|199599465|ref|ZP_03212857.1| ABC-type antimicrobial peptide transport system, ATPase component
           [Lactobacillus rhamnosus HN001]
 gi|258509854|ref|YP_003172605.1| glutamine ABC transporter ATP-binding protein [Lactobacillus
           rhamnosus GG]
 gi|199589637|gb|EDY97751.1| ABC-type antimicrobial peptide transport system, ATPase component
           [Lactobacillus rhamnosus HN001]
 gi|257149781|emb|CAR88754.1| ABC transporter, glutamine transporter ATP-binding protein
           [Lactobacillus rhamnosus GG]
 gi|259651114|dbj|BAI43276.1| ABC transporter ATP-binding component [Lactobacillus rhamnosus GG]
          Length = 258

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 20/97 (20%)

Query: 15  KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74
           K +   P++  +   F+ P         L                    S V IL G +G
Sbjct: 5   KIEYAPPRHHSD-YPFNLPWQADFHELTL-------------------TSPVTILTGDNG 44

Query: 75  SGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           SGKS L N  +    +   S  A   D    ++R   
Sbjct: 45  SGKSTLLNAIAANYNAILMSGAALEDDPEYDNSRALA 81


>gi|168702790|ref|ZP_02735067.1| cell division cycle protein 48-related protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 446

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 16/28 (57%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           +++ GP G GK+ LA   + +  ++  +
Sbjct: 207 ILMYGPPGCGKTHLARATAGEVNASFIA 234


>gi|168052515|ref|XP_001778695.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669910|gb|EDQ56488.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 416

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   +  + +     +        +    P ++ D+  L 
Sbjct: 196 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL-GEGPRMVRDVFRLA 252


>gi|188582877|ref|YP_001926322.1| hypothetical protein Mpop_3638 [Methylobacterium populi BJ001]
 gi|179346375|gb|ACB81787.1| conserved hypothetical protein [Methylobacterium populi BJ001]
          Length = 500

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFND 123
            +++ G SGSGKS L     ++S       I         L +    V++E     D N+
Sbjct: 26  RLLVQGNSGSGKSHLLRRLLEQSAGLVQQAIIDPEGDFVTLAERYGHVVVE----ADGNE 81

Query: 124 TQLFHIINSIHQYDSSLLMT 143
            +L  I   + ++  S++++
Sbjct: 82  AELLRIAARVREHRVSVVLS 101


>gi|110741185|dbj|BAF02143.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1135

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P++ ++L GP G+GK+ LA   + ++ +   +
Sbjct: 867 PTKGILLFGPPGTGKTMLAKAVATEAGANFIN 898


>gi|147920791|ref|YP_685403.1| putative cell division cycle protein 48 [uncultured methanogenic
           archaeon RC-I]
 gi|110620799|emb|CAJ36077.1| putative cell division cycle protein 48 [uncultured methanogenic
           archaeon RC-I]
          Length = 942

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 66/190 (34%), Gaps = 44/190 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106
           P + V+L GP G+GK+ +A   + ++ +   +     +                     +
Sbjct: 215 PPKGVLLFGPPGTGKTMIAKAVASETDAHFINISGPEIMSKYYGESEKQLRDIFKEAEDN 274

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + +++ID +                 QL  +++ +      +++ A   P +    
Sbjct: 275 APSIIFIDEIDSIAPKREEVTGEVERRVVAQLLSLMDGLQSRGQVVVVAATNRPNA---V 331

Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQI---FIDKKLAAYIVQRMERS 208
            P L    +       ++I +PD     +++      R +    ++  +  Y+   ++  
Sbjct: 332 DPALR---RGGRFDREIEIGVPDKVGRLEIL--HVHTRGMPLKTLNSVITRYLSTVLD-- 384

Query: 209 LVFAEKLVDK 218
           +     ++++
Sbjct: 385 VKDLSDIIER 394


>gi|91087737|ref|XP_974737.1| PREDICTED: similar to adenylate kinase 7 [Tribolium castaneum]
 gi|270009399|gb|EFA05847.1| hypothetical protein TcasGA2_TC008636 [Tribolium castaneum]
          Length = 785

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 66  VVILVGPSGSGKSCLA 81
            +I+ GP GSGK+ LA
Sbjct: 394 KIIIHGPPGSGKTHLA 409


>gi|388977|emb|CAA80816.1| ATP-binding protein [Escherichia coli]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 30/132 (22%)

Query: 2   NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55
           ++++E+     P ++++  P           P  +    DD ++                
Sbjct: 46  DIIREEIKEVAPHRERSALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95

Query: 56  IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
                +  +          ++L+GP+GSGK+ LA   +      R  ++  ++      T
Sbjct: 96  YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLT 149

Query: 108 RKPVLLEDIDLL 119
               + ED++ +
Sbjct: 150 EAGYVGEDVENI 161


>gi|39971519|ref|XP_367150.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|59802930|gb|AAX07670.1| MSP1 protein-like protein [Magnaporthe grisea]
 gi|145019539|gb|EDK03767.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S ++  +
Sbjct: 151 PSGVL-LYGPPGCGKTMLAKAVAHESGASFIN 181


>gi|51473692|ref|YP_067449.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           typhi str. Wilmington]
 gi|61214060|sp|Q68WM5|MIAA_RICTY RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|51460004|gb|AAU03967.1| IPP transferase [Rickettsia typhi str. Wilmington]
          Length = 311

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++IL GP+ SGKS L +  +        + +  +    I I T  P+ + +  +      
Sbjct: 6   IIILCGPTASGKSYLGHELAKAYGCEIINIDSMQVYREIPIITASPIQIYNTGIH----- 60

Query: 125 QLFHIIN 131
             +H+ N
Sbjct: 61  --YHLYN 65


>gi|67926050|ref|ZP_00519307.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
 gi|67852105|gb|EAM47607.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501]
          Length = 503

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 45/214 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 268

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 328

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       V +  PD     +++     ++++  D      I +R       A
Sbjct: 329 ------MRPGRFDRQVIVDAPDFKGRIEILEVHARNKKLAPDVS-IETIARRTP-GFSGA 380

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             L + ++  A+       R  A  +L+     D
Sbjct: 381 -DLANLLNEAAILTARR--RKEAVTLLEIDDAVD 411


>gi|332671374|ref|YP_004454382.1| IstB domain-containing protein ATP-binding protein [Cellulomonas
           fimi ATCC 484]
 gi|332340412|gb|AEE46995.1| IstB domain protein ATP-binding protein [Cellulomonas fimi ATCC
           484]
          Length = 262

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 47/152 (30%)

Query: 30  FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81
           F F    G++RD        D +                      V+ +GP G+GK+ LA
Sbjct: 83  FDFEHARGLARDQIAHLGTLDFVAARDN-----------------VVFLGPPGTGKTHLA 125

Query: 82  ---NIWSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND 123
               + + ++        A      L                     ++++++  + F  
Sbjct: 126 TGIAVRACQAGHRVLFATASEWVDRLASAHHDGRLQDELRRLGRYPLLVIDEVGYIPFEP 185

Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152
                 F ++ S     +SL++T+      WG
Sbjct: 186 EAANLFFQLV-SARYERASLIVTSNKPFGRWG 216


>gi|330850841|ref|YP_004376591.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC
           DA0580]
 gi|328835661|dbj|BAK18957.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC
           DA0580]
          Length = 626

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           V+LVGP G+GK+ LA   ++++    +S        + I     
Sbjct: 218 VLLVGPPGTGKTLLAKAIANEANVPFYSVAGSEFVEMFIGIGAA 261


>gi|326515000|dbj|BAJ99861.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520663|dbj|BAJ92695.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +  T        L    I     ++ E
Sbjct: 202 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRE 249


>gi|312134563|ref|YP_004001901.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor owensensis
           OL]
 gi|311774614|gb|ADQ04101.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor owensensis
           OL]
          Length = 616

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 204 ILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKRN 259


>gi|300934278|ref|ZP_07149534.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium
           resistens DSM 45100]
          Length = 424

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           V  A   A R  D      S +++L GP+GSGK+ LA   + K       ++  ++    
Sbjct: 96  VEEANAGARRSDDEVELSKSNILML-GPTGSGKTYLAQSLARK------LDVPFAIADAT 148

Query: 105 IDTRKPVLLEDIDLL 119
             T    + ED++ +
Sbjct: 149 SLTEAGYVGEDVENI 163


>gi|302687350|ref|XP_003033355.1| hypothetical protein SCHCODRAFT_76066 [Schizophyllum commune H4-8]
 gi|300107049|gb|EFI98452.1| hypothetical protein SCHCODRAFT_76066 [Schizophyllum commune H4-8]
          Length = 388

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     V+ E
Sbjct: 166 PPKGVLLYGPPGTGKTLLARAVAATLSTNFLKVVSSAIVDKYIGESARVVRE 217


>gi|298708118|emb|CBJ30460.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 2178

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 44 LVHSAIEQAVRLIDSWPSW-----PSRVVILVGPSGSGKSCLANIW 84
           V+     A   +D + +W     P+  +++ GPSGSGKS L   W
Sbjct: 13 FVYERDHDAFARLDDYCNWNQMSEPAAPLVVSGPSGSGKSALLANW 58


>gi|297465099|ref|XP_611641.2| PREDICTED: fidgetin-like [Bos taurus]
 gi|297471680|ref|XP_002685382.1| PREDICTED: fidgetin-like [Bos taurus]
 gi|296490599|gb|DAA32712.1| fidgetin-like [Bos taurus]
          Length = 748

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 50  EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
             A   + + P    R ++L GP G+GK+ L    + +  +T F      L
Sbjct: 498 SDAFSGLTALP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGL 544


>gi|269218252|ref|ZP_06162106.1| putative cell division protein [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212380|gb|EEZ78720.1| putative cell division protein [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 1002

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 14/78 (17%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           R V+L GP G+GK+ LA   + ++    +S  A     + +      + +          
Sbjct: 276 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISASEFVEMFVGVGASRVRD---------- 325

Query: 125 QLFHIINSIHQYDSSLLM 142
               + N   +   +++ 
Sbjct: 326 ----LFNKAKENAPAIVF 339


>gi|239988693|ref|ZP_04709357.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL
           11379]
          Length = 684

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    +S        + +      + +  +    N   +
Sbjct: 209 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 268


>gi|298345494|ref|YP_003718181.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063]
 gi|304391050|ref|ZP_07373002.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298235555|gb|ADI66687.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063]
 gi|304325933|gb|EFL93179.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 759

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 63/205 (30%), Gaps = 51/205 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 223 VLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEMFVGMGASRVRDLFEQARAAAPAI 282

Query: 111 VLLEDIDLL------------DFNDTQLFHII------------------NSIHQYDSSL 140
           + +++ID +            D  +  L  ++                  N     D +L
Sbjct: 283 IFVDEIDAVGRHRGTGLGGGHDEREQTLNQLLVEMDGFDERTNVIMIAATNRADVLDPAL 342

Query: 141 LMTARTFPVSWGVCLPDLCSRLK-AATVVKISLPD-DDFLEKVIVKMFADRQIFIDKKL- 197
           L   R       V  PDL  R    A   K    D +  ++ +  +        +   L 
Sbjct: 343 LRPGRFD-RQVAVEAPDLKGREAILAVHAKNKPLDPETDMKSLAKRSPGFTGADLANVLN 401

Query: 198 -AAYIVQRMERSLVFAEKLVDKMDN 221
            AA +  R  R  + A+ L + +D 
Sbjct: 402 EAALLAARHSRETITAQDLDEAVDR 426


>gi|227547907|ref|ZP_03977956.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227080012|gb|EEI17975.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 805

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 66/198 (33%), Gaps = 43/198 (21%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 200 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQARENAP 259

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     +  +L+ A   P     
Sbjct: 260 CIIFVDEIDAVGRQRGSGTGGGHDEREQTLNQLLVEMDGFGPREGVILIAATNRPDILDP 319

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       + ++ PD    ++++     D+ +  D  L   + +R    + 
Sbjct: 320 AL------LRPGRFDRQIPVTNPDLAGRQQILKVHAKDKPLGPDADL-DALAKRTA-GMS 371

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  AL    
Sbjct: 372 GA-DLANVLNEAALLTAR 388


>gi|295662547|ref|XP_002791827.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226279479|gb|EEH35045.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 450

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 16/82 (19%)

Query: 14  DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI-------DSWP-SWPSR 65
            K   D P+ +   L         +  D+L+  + +    R++       ++W  +W +R
Sbjct: 121 GKSDEDGPQARIISL-------PQLLFDELIPSTLLRAVSRMLVFSWSKLNTWTINW-NR 172

Query: 66  VVILVGPSGSGKSCLANIWSDK 87
           +++L GP G+GK+ L    + K
Sbjct: 173 LILLYGPPGTGKTSLCRGLAQK 194


>gi|212537565|ref|XP_002148938.1| proteasome regulatory particle subunit Rpt4, putative [Penicillium
           marneffei ATCC 18224]
 gi|210068680|gb|EEA22771.1| proteasome regulatory particle subunit Rpt4, putative [Penicillium
           marneffei ATCC 18224]
          Length = 393

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIRE 221


>gi|307150315|ref|YP_003885699.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
 gi|306980543|gb|ADN12424.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
          Length = 628

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 45/214 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 268

Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +           ND       QL   ++        +++ A   P      L
Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 328

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 ++       V +  PD      ++     ++++   +     I +R       A
Sbjct: 329 ------MRPGRFDRQVIVDAPDVKGRLAILEVHARNKKLA-SEISLDAIARRTP-GFSGA 380

Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
             L + ++  A+       R  A  +L+     D
Sbjct: 381 -DLANLLNEAAILTARR--RKEAITMLEIDDAID 411


>gi|194887737|ref|XP_001976792.1| GG18587 [Drosophila erecta]
 gi|190648441|gb|EDV45719.1| GG18587 [Drosophila erecta]
          Length = 479

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           P R ++L GP GSGK+ LA     +++   
Sbjct: 239 PWRSLLLHGPPGSGKTLLAKALYSETQGQV 268


>gi|223938604|ref|ZP_03630495.1| ABC transporter related-protein [bacterium Ellin514]
 gi|223892723|gb|EEF59193.1| ABC transporter related-protein [bacterium Ellin514]
          Length = 226

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 33/95 (34%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            + L+GPSGSGKS L +I +                 I   T    L++ ID+   N+++
Sbjct: 38  FLTLMGPSGSGKSTLLHIIA----------------GIDRPTSGECLVQGIDVAKLNESE 81

Query: 126 L-----------FHIINS-----IHQY-DSSLLMT 143
           L           F   N       ++  +  LL+T
Sbjct: 82  LADWRNQNVGFVFQTFNLMPVLTAYENVELPLLLT 116


>gi|171913175|ref|ZP_02928645.1| ABC transporter, ATP-binding protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 555

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
             +LVGPSG GKS L  + S  + +T         D   + T  P+ +            
Sbjct: 34  FAVLVGPSGCGKSTLLRVLSGLTSATSGLVRVGGYDPAELRTALPLAV-----GYLPQFA 88

Query: 126 LFH 128
            FH
Sbjct: 89  AFH 91


>gi|149916285|ref|ZP_01904805.1| replication factor C small subunit [Roseobacter sp. AzwK-3b]
 gi|149809739|gb|EDM69591.1| replication factor C small subunit [Roseobacter sp. AzwK-3b]
          Length = 234

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 61/181 (33%), Gaps = 34/181 (18%)

Query: 67  VILVGPSGSGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRK---------------- 109
           ++L GP G+ K+  A  I  ++ R+   +   +  +   +  ++                
Sbjct: 38  LMLWGPPGTAKTTTARVIIRERYRAAGHTGAIEEFNGAELTAKEIANLSSIQMLQRLTGK 97

Query: 110 --PVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC---LPDLCSRLKA 164
              +L+ + D +D +    F            L++T    P   GV    +P L SR + 
Sbjct: 98  VPIILINEFDEMDRDTQAKFRAW-MEKHKGIELVVTTNEQPGVQGVKQKIMPALQSRFE- 155

Query: 165 ATVVKISLPD--DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSL-VFAEKLVDK 218
              V+++ P   D         +       +       ++       R +    E+ V++
Sbjct: 156 --RVELAPPSLQDCLPRA--QAIMQQEGFAVSTHALQMLLSTFNGDIRDMLPRLEEGVEQ 211

Query: 219 M 219
           +
Sbjct: 212 L 212


>gi|149202871|ref|ZP_01879842.1| ATPase, AAA family protein [Roseovarius sp. TM1035]
 gi|149143417|gb|EDM31453.1| ATPase, AAA family protein [Roseovarius sp. TM1035]
          Length = 436

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID-- 117
            S     ++  GP G GK+ +A + +D++        A       +      + ++    
Sbjct: 51  ASGSLSSLVFWGPPGVGKTTIARLLADETDLHFVQISAIFTGVPDLRK----VFDEAKHR 106

Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163
                 T LF    H  N   Q          ++L+   T              L SR +
Sbjct: 107 RTQGRGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LLSRAQ 163

Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD------ 217
              + +++L D + L +   +    R + +D      ++   +        L++      
Sbjct: 164 VLVLTRLTLADMERLAQRAEQELG-RALPLDGPAREALLDMADGDGRALLNLIEQVAAWK 222

Query: 218 ---KMDNLALSRG 227
              K+D+ AL+  
Sbjct: 223 VEGKLDSAALATR 235


>gi|153815669|ref|ZP_01968337.1| hypothetical protein RUMTOR_01905 [Ruminococcus torques ATCC 27756]
 gi|145846910|gb|EDK23828.1| hypothetical protein RUMTOR_01905 [Ruminococcus torques ATCC 27756]
          Length = 271

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 20/116 (17%)

Query: 52  AVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSI-- 103
           A   +D+W       +  +  GP G+GKS +A   ++    +  + + +N    +D I  
Sbjct: 97  AKNYVDNWEKMKRNHIGCLFWGPVGTGKSYVAGCIANDLLKREVTVKMTNFNTIIDDIFP 156

Query: 104 ---------LIDTRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTF 147
                     + + + ++++D+ +   ++  L   F +I+   +    L++T    
Sbjct: 157 LADKTEYINALASYQLLIIDDLGVERNSEYALGIIFSVIDRRIRSGRPLIITTNLP 212


>gi|90021340|ref|YP_527167.1| recombination factor protein RarA [Saccharophagus degradans 2-40]
 gi|89950940|gb|ABD80955.1| Recombination protein MgsA / PAS/PAC sensor signal transduction
           histidine kinase [Saccharophagus degradans 2-40]
          Length = 444

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 27/176 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +IL GP G GK+ LA + +++ +    +  A       I        E    +    T L
Sbjct: 53  MILWGPPGVGKTSLARLLANEIQGHFIAISAVLSGVKEIRAAVAEA-EQQRNMYGRTTVL 111

Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  N           +  + + + A T   S+ V    L SR     V  +    
Sbjct: 112 FVDEVHRFNKSQQDAFLPYVEDGTVVFVGATTENPSFEVNNA-LLSR---CRVYVLKGFT 167

Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223
              L +++    AD       R++ + +  A  ++Q  +     A +L++ ++  +
Sbjct: 168 QQDLTELLQSALADTKRGLGARELNVAEDGANLLIQAAD---GDARRLLNLLEIAS 220


>gi|158299762|ref|XP_319799.4| AGAP009047-PA [Anopheles gambiae str. PEST]
 gi|157013673|gb|EAA14768.4| AGAP009047-PA [Anopheles gambiae str. PEST]
          Length = 358

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 21/131 (16%)

Query: 95  NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ---YDSSLLM----TARTF 147
              + +D       K ++L ++D L  +     H +    +       L++    T+R  
Sbjct: 116 AQTQQIDPSGQREFKTIVLSEVDELTKDAQ---HALRRTMEKYVATCRLILCVNSTSRII 172

Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207
           P           SR      +++S P +D +  ++  +     + I  +LA  I Q+ ER
Sbjct: 173 PAV--------KSR---CLGIRVSAPTEDEIVSIMNSICKKENLHIPPELATRIAQKSER 221

Query: 208 SLVFAEKLVDK 218
           +L  A   ++ 
Sbjct: 222 NLRRAILTLEA 232


>gi|45361037|ref|NP_989155.1| proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Xenopus
           (Silurana) tropicalis]
 gi|147901369|ref|NP_001084136.1| 26S protease regulatory subunit 7 [Xenopus laevis]
 gi|1172640|sp|P46472|PRS7_XENLA RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2; AltName:
           Full=Protein MSS1; Short=xMSS1
 gi|695772|emb|CAA56438.1| xMSS1 [Xenopus laevis]
 gi|32450021|gb|AAH54143.1| XMSS1 protein [Xenopus laevis]
 gi|38494277|gb|AAH61627.1| 26S protease regulatory subunit 7 [Xenopus (Silurana) tropicalis]
 gi|89267871|emb|CAJ83029.1| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Xenopus
           (Silurana) tropicalis]
 gi|163916327|gb|AAI57415.1| XMSS1 protein [Xenopus laevis]
 gi|1095500|prf||2109230A MSS1-like protein
          Length = 433

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR 351


>gi|313884918|ref|ZP_07818670.1| ABC transporter, ATP-binding protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619609|gb|EFR31046.1| ABC transporter, ATP-binding protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 587

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 18/124 (14%)

Query: 10  FFVPDKQKNDQPKNKEEQLF-----FSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWP 63
           F   ++ +     +KE QL        F     G + D  ++H     A          P
Sbjct: 319 FEFLNETEMTDESHKERQLSEVQGLVEFDHVKFGYNEDQTIIHDFSAYAK---------P 369

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            R V +VGP+G+GK+ L N+     R    +    S+D + I       + D   +   D
Sbjct: 370 GRKVAIVGPTGAGKTTLVNL---LMRFYEVNGGKISIDGVDIKEMPRAEIHDYFAMVLQD 426

Query: 124 TQLF 127
           T +F
Sbjct: 427 TWIF 430


>gi|311063897|ref|YP_003970622.1| AAA family ATPase [Bifidobacterium bifidum PRL2010]
 gi|310866216|gb|ADP35585.1| AAA family ATPase [Bifidobacterium bifidum PRL2010]
          Length = 402

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P + VI  G  G+GK+ LA I ++ + +  +
Sbjct: 186 PIKGVIFTGAPGTGKTHLARIIANVADAQFY 216


>gi|302813058|ref|XP_002988215.1| hypothetical protein SELMODRAFT_127714 [Selaginella moellendorffii]
 gi|300143947|gb|EFJ10634.1| hypothetical protein SELMODRAFT_127714 [Selaginella moellendorffii]
          Length = 545

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST 91
           P R V+L GP G+GK+ LA   + ++ + 
Sbjct: 284 PCRGVLLFGPPGTGKTLLAKAVATEAGAN 312


>gi|298250549|ref|ZP_06974353.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548553|gb|EFH82420.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 1080

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 12  VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVG 71
           +   Q + Q  + ++QL             +L+    +    + +DSW +   ++ +L+ 
Sbjct: 124 ITASQHSQQAPSGQDQLLLDTKLRPPRLPLELVERPRL---FKRLDSWSA--YKLTLLIA 178

Query: 72  PSGSGKSCLANIWSDKSR 89
           P+GSGK+ LA  W  ++ 
Sbjct: 179 PAGSGKTTLATSWLAQND 196


>gi|268323400|emb|CBH36988.1| proteasome-activating nucleotidase [uncultured archaeon]
          Length = 410

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+LVG  G+GK+ LA   ++++ +T    +   L    I     ++ E
Sbjct: 183 PPKGVLLVGAPGTGKTLLAKSAANRTAATFIRVVGSELVQKYIGEGARMVRE 234


>gi|302419019|ref|XP_003007340.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102]
 gi|261352991|gb|EEY15419.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102]
          Length = 718

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 33/118 (27%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110
           ++LVGP G+GK+ LA   + ++    F       D + +                     
Sbjct: 279 ILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRDLFTSAKSKSPAI 338

Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
           + ++++D +                    LL  A   P +      D   RL+   V 
Sbjct: 339 IFIDELDAIGGK-----------RNAQGRLLRQADPQPAA------DRARRLRTEQVA 379


>gi|297598628|ref|NP_001045965.2| Os02g0159900 [Oryza sativa Japonica Group]
 gi|255670621|dbj|BAF07879.2| Os02g0159900 [Oryza sativa Japonica Group]
          Length = 44

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
          P +  +L GP G+GKS LA   + ++ ST F
Sbjct: 13 PWKAFLLYGPPGTGKSYLAKAVATEADSTFF 43


>gi|241764210|ref|ZP_04762243.1| phosphonate C-P lyase system protein PhnK [Acidovorax delafieldii
           2AN]
 gi|241366429|gb|EER60940.1| phosphonate C-P lyase system protein PhnK [Acidovorax delafieldii
           2AN]
          Length = 262

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 53  VRLIDSWPS-WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106
           V L D+    WP  V+ +VG SGSGKS L N  + +S     S   +  D  L D
Sbjct: 24  VALQDASFDLWPGEVLAVVGESGSGKSTLLNAVAARSAPDAGSVQFRGRDGALQD 78


>gi|268678708|ref|YP_003303139.1| ATPase AAA [Sulfurospirillum deleyianum DSM 6946]
 gi|268616739|gb|ACZ11104.1| AAA ATPase central domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 396

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 70/169 (41%), Gaps = 20/169 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSD---------KSRSTRFSNIAKSLDSILIDTRKPVL-LE 114
              +  GP+G GK+ LA I ++          + S +   I K L       +KP++ ++
Sbjct: 40  SHALFFGPAGVGKTTLARIVANTLQLPFYELDATSIKVEEIRKILSQHRGALQKPLIFID 99

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           +I  L     ++  +     +   ++++ A T    + +    + SR+    + +    +
Sbjct: 100 EIHRLSKTQQEVLLL---PMENHEAIVIGASTENPYFVLSSG-IRSRM---MLFEFYPLE 152

Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRM---ERSLVFAEKLVDKMD 220
              +E ++ ++    +  ID++   Y+++      RS +   +   K+D
Sbjct: 153 MKDMEAILERVHEKIEFQIDEEAREYLIRSSAGDSRSFLNLLEFALKVD 201


>gi|269925357|ref|YP_003321980.1| ABC transporter related protein [Thermobaculum terrenum ATCC
          BAA-798]
 gi|269789017|gb|ACZ41158.1| ABC transporter related protein [Thermobaculum terrenum ATCC
          BAA-798]
          Length = 247

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTR 92
           V+L GP+GSGK+ L  I +  SR++R
Sbjct: 44 RVLLWGPNGSGKTSLLRILATLSRASR 70


>gi|225434670|ref|XP_002279721.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 818

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 30/195 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------D 106
           P R V+LVG  G+GK+ LA   + ++     S  A     + +                +
Sbjct: 372 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKE 431

Query: 107 TRKPVLLEDIDLLDFNDTQLFHII-NSIHQYDSSLLMT------ARTFPVSWG------V 153
               + +++ID +  +    F I+ N   +   + L+T      + +  +  G      V
Sbjct: 432 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 491

Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
             P L    +   VV +  PD    E ++    + +++ + + +    +  M  S   A 
Sbjct: 492 LDPALRRPGRFDRVVMVETPDRIGREAILKVHVSKKELPLGEDVDLSDIASMTTSFTGA- 550

Query: 214 KLVDKMDNLALSRGM 228
            L + ++  AL  G 
Sbjct: 551 DLANLVNEAALLAGR 565


>gi|224282562|ref|ZP_03645884.1| Vesicle-fusing ATPase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287024|ref|YP_003938282.1| ATPase family associated with various cellular activities (AAA)
           [Bifidobacterium bifidum S17]
 gi|309250960|gb|ADO52708.1| ATPase family associated with various cellular activities (AAA)
           [Bifidobacterium bifidum S17]
          Length = 402

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93
           P + VI  G  G+GK+ LA I ++ + +  +
Sbjct: 186 PIKGVIFTGAPGTGKTHLARIIANVADAQFY 216


>gi|218885734|ref|YP_002435055.1| ABC transporter [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756688|gb|ACL07587.1| ABC transporter related [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 268

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 17/90 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   + L+GPSGSGKS L N+ +   R            ++ +       L+D DL  + 
Sbjct: 74  PGEFLALMGPSGSGKSTLLNLIAGIDR--------VDAGAVFVGETDITTLDDADLARWR 125

Query: 123 DTQL---FHIINSI------HQYDSSLLMT 143
              +   F   N I         +  LL+T
Sbjct: 126 SRSVGFIFQFYNLIPVLNALENVELPLLLT 155


>gi|213408497|ref|XP_002175019.1| AAA family ATPase Vps4 [Schizosaccharomyces japonicus yFS275]
 gi|212003066|gb|EEB08726.1| AAA family ATPase Vps4 [Schizosaccharomyces japonicus yFS275]
          Length = 436

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P   ++L GP G+GKS LA   + ++ ST FS
Sbjct: 165 PWSGILLYGPPGTGKSFLAKAVATEAGSTFFS 196


>gi|168026657|ref|XP_001765848.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683025|gb|EDQ69439.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 387

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   +  + +     +        +    P ++ D+  L 
Sbjct: 167 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL-GEGPRMVRDVFRLA 223


>gi|164424374|ref|XP_962471.2| hypothetical protein NCU07313 [Neurospora crassa OR74A]
 gi|157070486|gb|EAA33235.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 849

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           ++++L GP G GK+ LA++ + ++ 
Sbjct: 138 KILMLTGPPGLGKTTLAHVCARQAG 162


>gi|38181888|gb|AAH61542.1| Proteasome (prosome, macropain) 26S subunit, ATPase 2 [Rattus
           norvegicus]
          Length = 433

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR 351


>gi|20259341|gb|AAM13995.1| unknown protein [Arabidopsis thaliana]
          Length = 1265

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            P++ ++L GP G+GK+ LA   + ++ +   +
Sbjct: 997  PTKGILLFGPPGTGKTMLAKAVATEAGANFIN 1028


>gi|30679158|ref|NP_567238.2| AAA-type ATPase family protein [Arabidopsis thaliana]
 gi|110739712|dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656777|gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana]
          Length = 1265

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            P++ ++L GP G+GK+ LA   + ++ +   +
Sbjct: 997  PTKGILLFGPPGTGKTMLAKAVATEAGANFIN 1028


>gi|30677905|ref|NP_849921.1| ABC transporter family protein [Arabidopsis thaliana]
 gi|222423245|dbj|BAH19599.1| AT2G01320 [Arabidopsis thaliana]
 gi|330250338|gb|AEC05432.1| ABC transporter G family member 7 [Arabidopsis thaliana]
          Length = 727

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R++ ++GPSGSGK+ L N+ + +
Sbjct: 100 PGRLLAIMGPSGSGKTTLLNVLAGQ 124


>gi|30022495|ref|NP_834126.1| Holliday junction DNA helicase B [Bacillus cereus ATCC 14579]
 gi|29898053|gb|AAP11327.1| Holliday junction DNA helicase ruvB [Bacillus cereus ATCC 14579]
          Length = 286

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 65/188 (34%), Gaps = 25/188 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI +++      +    ++            L+  D+L  ++   
Sbjct: 9   VLLYGPPGLGKTTLANIIANEMGVNVKTTSGPAIGRPGDLAAVLTALQPGDVLFIDEI-- 66

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPDDDFL 178
            H ++   +    +L      P     CL       P   S RL       +        
Sbjct: 67  -HRLHRSIEE---VLY-----PAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGA---TTR 114

Query: 179 EKVIVKMFADRQIFIDKK---LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
              +     DR   + +        +   +ER+    E  +D +  L ++R    T  +A
Sbjct: 115 AGALSAPLRDRFGVLSRVEYYTVDQLSAIVERTAEVFEVEIDSLAALEIARRARGTPRIA 174

Query: 236 AEVLKETQ 243
             +L+  +
Sbjct: 175 NRLLRRVR 182


>gi|15604083|ref|NP_220598.1| putative ATPase N2B (n2B) [Rickettsia prowazekii str. Madrid E]
 gi|3860774|emb|CAA14675.1| PUTATIVE ATPASE N2B (n2B) [Rickettsia prowazekii]
 gi|292571807|gb|ADE29722.1| Putative ATPase n2B [Rickettsia prowazekii Rp22]
          Length = 357

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 41/109 (37%), Gaps = 24/109 (22%)

Query: 67  VILVGPSGSGKSCLANIW-----------------------SDKSRSTRFSNIAKSLDSI 103
           + L GP GSGK+ L N +                         + ++ +  +I   +   
Sbjct: 47  IYLYGPVGSGKTLLMNSFFDAISISKTILHYQNFIHEMHKSMHRLQTEKQKDIITKIAKN 106

Query: 104 LIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151
                K + +++ ++ D  D  +   + N + + +  + +T+ T P + 
Sbjct: 107 YAKQTKVLCIDEFEIKDITDAMIISRLFNELIKQNIFIFITSNTSPNNL 155


>gi|115525873|ref|YP_782784.1| Fis family transcriptional regulator [Rhodopseudomonas palustris
          BisA53]
 gi|115519820|gb|ABJ07804.1| DNA-binding protein Fis / transcriptional regulator, Fis family
          [Rhodopseudomonas palustris BisA53]
          Length = 395

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLANIWSDKS 88
          P  +   R++ +V ++      ++      P+ + V+L+G SG+GKS  A    D S
Sbjct: 18 PNSISRGRNEFIVGNSRAMIAAMMKLERVAPTSLSVLLLGESGTGKSLFARAIHDLS 74


>gi|332879429|ref|ZP_08447125.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682619|gb|EGJ55520.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 423

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 24/149 (16%)

Query: 67  VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI------------LIDTRKPVL 112
            IL GP G GK+ LA I + +  +     S +   +  +                   + 
Sbjct: 42  FILWGPPGVGKTTLAQIIAHRLETPFYTLSAVTSGVKDVREVIEKARNNRFFTQASPILF 101

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +  +  L+ A T   S+ V  P L SR     +  + 
Sbjct: 102 IDEIHRFSKSQQDSLL----GAVEQGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 153

Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAY 200
               D L +++ K   +R I +  K   +
Sbjct: 154 SLTKDDLLELLHK-AVERDIILKTKHIEF 181


>gi|332520188|ref|ZP_08396652.1| FeS assembly ATPase SufC [Lacinutrix algicola 5H-3-7-4]
 gi|332044747|gb|EGI80941.1| FeS assembly ATPase SufC [Lacinutrix algicola 5H-3-7-4]
          Length = 250

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 12/63 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P  V  ++GP+GSGKS LA++ + K               IL+D       ED++ L  +
Sbjct: 26  PGEVHAIMGPNGSGKSTLASVIAGK------EEYEVEKGEILLDG------EDLEDLAAD 73

Query: 123 DTQ 125
           +  
Sbjct: 74  ERA 76


>gi|329930087|ref|ZP_08283706.1| ABC transporter, ATP-binding protein [Paenibacillus sp. HGF5]
 gi|328935346|gb|EGG31821.1| ABC transporter, ATP-binding protein [Paenibacillus sp. HGF5]
          Length = 227

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 16/61 (26%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V ++GPSGSGKS L ++                L  +   T   V +E+ D+   ++T+
Sbjct: 35  FVAIIGPSGSGKSTLLHL----------------LGGVDRPTSGKVFVENTDIYALDETR 78

Query: 126 L 126
           L
Sbjct: 79  L 79


>gi|327298125|ref|XP_003233756.1| ATPase family AAA domain-containing protein [Trichophyton rubrum
           CBS 118892]
 gi|326463934|gb|EGD89387.1| ATPase family AAA domain-containing protein [Trichophyton rubrum
           CBS 118892]
          Length = 416

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 147 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 177


>gi|322497908|emb|CBZ32983.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 214

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108
           +I+ GP GSGK+ LA   +     T  +  + +   + +   
Sbjct: 54  IIITGPPGSGKTTLAAKLAAHYGITHVAATSAAAGDMAMPAG 95


>gi|308069462|ref|YP_003871067.1| cell division protein, ftsH-like protein [Paenibacillus polymyxa
           E681]
 gi|305858741|gb|ADM70529.1| Cell division protein, ftsH-like protein [Paenibacillus polymyxa
           E681]
          Length = 500

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   +  + S   +        + +      + E
Sbjct: 103 PLKGVLLTGPPGTGKTLMAKAAAHYTNSVFVAASGSEFVEMYVGVGAGRVRE 154


>gi|299750239|ref|XP_001836624.2| ribosome biogenesis ATPase RIX7 [Coprinopsis cinerea okayama7#130]
 gi|298408810|gb|EAU85195.2| ribosome biogenesis ATPase RIX7 [Coprinopsis cinerea okayama7#130]
          Length = 799

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P R V+L GP G GK+ LAN  + +  
Sbjct: 191 PPRGVLLHGPPGCGKTLLANAIAGELG 217



 Score = 37.4 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           V++ GP G GK+ LA   +++SR+   S     L +  +   +  +
Sbjct: 527 VLMWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 572


>gi|295102149|emb|CBK99694.1| ABC-type multidrug transport system, ATPase and permease components
           [Faecalibacterium prausnitzii L2-6]
          Length = 584

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 64  SRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + +  +VGPSGSGKS +A +    W  +S   R   +      +         + ++   
Sbjct: 363 NGMTAIVGPSGSGKSTIARLIASFWEAESGCVRIGGVDVRNIPLPQ-------IMELVSY 415

Query: 120 DFNDTQLFHIINSIHQY 136
              D  LFH+  SI + 
Sbjct: 416 VSQDNFLFHL--SIREN 430


>gi|262202715|ref|YP_003273923.1| cytidylate kinase [Gordonia bronchialis DSM 43247]
 gi|262086062|gb|ACY22030.1| cytidylate kinase [Gordonia bronchialis DSM 43247]
          Length = 244

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
           SRVV + GP+G+GKS L+ + + +  +      A    + L      V LED
Sbjct: 20  SRVVAIDGPAGTGKSTLSKMLAAQVGAHYLDTGAMYRAATLAVLDADVSLED 71


>gi|302898195|ref|XP_003047798.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256728729|gb|EEU42085.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 432

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + VIL G  G+GK+ LA   ++++ +T    +   L    +     ++          
Sbjct: 216 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLVAGENAPSIVF 275

Query: 113 LEDIDLLD 120
           +++ID + 
Sbjct: 276 IDEIDAIG 283


>gi|257063784|ref|YP_003143456.1| protein RecA [Slackia heliotrinireducens DSM 20476]
 gi|256791437|gb|ACV22107.1| protein RecA [Slackia heliotrinireducens DSM 20476]
          Length = 361

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            R++ + GP  SGK+ LA     ++++          +  L  T    L  DID L    
Sbjct: 70  GRIIEVYGPEASGKTTLALQILAEAQAAGGIAAFIDAEHALDPTYAARLGVDIDELLIAQ 129


>gi|221091036|ref|XP_002170739.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 167

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKS 88
              +  ++L G SG GK+ LA  + + S
Sbjct: 37 QDANNSTLVLYGMSGVGKTHLARKYCEIS 65


>gi|167957576|ref|ZP_02544650.1| clp protease ATP binding subunit [candidate division TM7
           single-cell isolate TM7c]
          Length = 799

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 45  VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104
           V  A+ +A   + +  + P    + +GP+G GK+ LA   ++              + + 
Sbjct: 522 VSDALRRARAGVRN-QNRPIGTFLFLGPTGVGKTELAKALAEVY-------FGGEDNIVR 573

Query: 105 IDTRKPVLLEDIDLLDFN 122
           +D  + V LED+  L  +
Sbjct: 574 LDLNEYVGLEDVSRLIAD 591


>gi|308801871|ref|XP_003078249.1| 26S proteasome AAA-ATPase subunit RPT4a (ISS) [Ostreococcus tauri]
 gi|116056700|emb|CAL52989.1| 26S proteasome AAA-ATPase subunit RPT4a (ISS) [Ostreococcus tauri]
          Length = 727

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 186 PPKGVLLYGPPGTGKTLLAKAIASNIDANFLKIVSSAIVDKYIGESARLIRE 237


>gi|332160145|ref|YP_004296722.1| putative NTP-binding protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|332160512|ref|YP_004297089.1| putative NTP-binding protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|332160829|ref|YP_004297406.1| putative NTP-binding protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|55163168|emb|CAH61106.1| putative NTP-binding protein [Yersinia enterocolitica]
 gi|318604072|emb|CBY25570.1| ISPsy4, transposition helper protein [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664375|gb|ADZ41019.1| Putative NTP-binding protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664742|gb|ADZ41386.1| Putative NTP-binding protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665059|gb|ADZ41703.1| Putative NTP-binding protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 241

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 21/107 (19%)

Query: 65  RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK----------- 109
           R +I VG  G+GK+ LA       +      RF N+   ++ + +D              
Sbjct: 99  RNIIFVGGPGTGKTHLATALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 158

Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
              ++L+++  L F+      LFH+I+ +H++ +S+++T       W
Sbjct: 159 LDLIVLDELGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 204


>gi|51262008|gb|AAH80137.1| 26S protease regulatory subunit 7 [Xenopus (Silurana) tropicalis]
          Length = 433

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 328 DAALMRPGRLDRKIEFSLPDLEGR 351


>gi|197098688|ref|NP_001126144.1| 26S protease regulatory subunit 7 [Pongo abelii]
 gi|75070629|sp|Q5R8D7|PRS7_PONAB RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT1; AltName:
           Full=Proteasome 26S subunit ATPase 2
 gi|55730503|emb|CAH91973.1| hypothetical protein [Pongo abelii]
          Length = 433

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 328 DPALMRPGRLDRKIEFSLPDLEGR 351


>gi|315655112|ref|ZP_07908014.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|315490593|gb|EFU80216.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 51333]
          Length = 420

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +   K         A +    + +  + +LL  I   D +
Sbjct: 114 ILLLGPTGTGKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGD 171


>gi|302826469|ref|XP_002994701.1| hypothetical protein SELMODRAFT_139024 [Selaginella moellendorffii]
 gi|300137107|gb|EFJ04233.1| hypothetical protein SELMODRAFT_139024 [Selaginella moellendorffii]
          Length = 368

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
           P R V+L GP G+GK+ LA   +  + +     +        +    P ++ D+  L 
Sbjct: 148 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL-GEGPRMVRDVFRLA 204


>gi|300691219|ref|YP_003752214.1| cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum PSI07]
 gi|299078279|emb|CBJ50927.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum PSI07]
          Length = 628

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+LVGP G+GK+ LA   + +++   FS        + +      + +
Sbjct: 188 RGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRD 237


>gi|299066493|emb|CBJ37683.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum CMR15]
          Length = 628

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+LVGP G+GK+ LA   + +++   FS        + +      + +
Sbjct: 188 RGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRD 237


>gi|163815250|ref|ZP_02206627.1| hypothetical protein COPEUT_01410 [Coprococcus eutactus ATCC 27759]
 gi|158449445|gb|EDP26440.1| hypothetical protein COPEUT_01410 [Coprococcus eutactus ATCC 27759]
          Length = 443

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 27/135 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           +I  GP G+GK+ LA + ++ +++        +   K ++ ++ + R      DI  +  
Sbjct: 55  LIFYGPPGTGKTTLAMVIANTTKAEFRQLNATTAGKKDMEQVVNEAR------DIKAMYG 108

Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169
             T LF    H  N           +  + +L+ A T    + V    L SR   + + +
Sbjct: 109 KRTILFIDEIHRFNKSQQDYLLPFVEDGTVILIGATTENPYFEVNGA-LISR---SHIFQ 164

Query: 170 ISLPDDDFLEKVIVK 184
           +     + ++K+I K
Sbjct: 165 LHPLSKEDIKKLIHK 179


>gi|160937850|ref|ZP_02085209.1| hypothetical protein CLOBOL_02742 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439289|gb|EDP17042.1| hypothetical protein CLOBOL_02742 [Clostridium bolteae ATCC
           BAA-613]
          Length = 445

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 27/147 (18%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLD-- 120
             +I  GP G+GK+ LA + ++ + +   + +        +     + V+ E  D +   
Sbjct: 60  GSIIFYGPPGTGKTTLAKVIANTTSADFRQINATVAGKKDM-----EEVVKEAKDNIGMY 114

Query: 121 FNDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168
              T LF    H  N           +  + +L+ A T    + V    L SR   + + 
Sbjct: 115 GRKTILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LLSR---SRIF 170

Query: 169 KISLPDDDFLEKVIVKMFAD--RQIFI 193
           ++   + + ++++I +   D  R + I
Sbjct: 171 ELKPLEKEDVKELIRRAVYDKERGMGI 197


>gi|156087871|ref|XP_001611342.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798596|gb|EDO07774.1| conserved hypothetical protein [Babesia bovis]
          Length = 944

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 32  FPRCLGI---SRDDLLVHSAI-EQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLANIWSD 86
            P C         DL+ + A   + V  + SW         +L GP G GK+  A I + 
Sbjct: 431 LPLCEKYRPIHLTDLIGNEANIRKVVDWLKSWSPGSLPACALLSGPPGVGKTTTAKIVAA 490

Query: 87  KSR 89
           +  
Sbjct: 491 ECG 493


>gi|108707332|gb|ABF95127.1| ATPase, AAA family protein, expressed [Oryza sativa Japonica Group]
          Length = 1002

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            +V++L GP G GK+ LA++ + K        I  S D     + +P +L+ I
Sbjct: 355 QKVLLLCGPPGLGKTTLAHV-AAKHCGYHVVEINAS-DDRSASSIEPKILDVI 405


>gi|30677907|ref|NP_849922.1| ABC transporter family protein [Arabidopsis thaliana]
 gi|330250340|gb|AEC05434.1| ABC transporter G family member 7 [Arabidopsis thaliana]
          Length = 728

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R++ ++GPSGSGK+ L N+ + +
Sbjct: 100 PGRLLAIMGPSGSGKTTLLNVLAGQ 124


>gi|17546245|ref|NP_519647.1| ATP-dependent zinc metallopeptidase [Ralstonia solanacearum
           GMI1000]
 gi|17428542|emb|CAD15228.1| probable atp-dependent zinc metallopeptidase (cell division ftsh)
           transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 628

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+LVGP G+GK+ LA   + +++   FS        + +      + +
Sbjct: 188 RGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRD 237


>gi|167036728|ref|YP_001664306.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039447|ref|YP_001662432.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|256751850|ref|ZP_05492722.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300915473|ref|ZP_07132786.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307725228|ref|YP_003904979.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|320115150|ref|YP_004185309.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|310943091|sp|B0K5A3|FTSH1_THEPX RecName: Full=ATP-dependent zinc metalloprotease FtsH 1
 gi|166853687|gb|ABY92096.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|166855562|gb|ABY93970.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749257|gb|EEU62289.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300888533|gb|EFK83682.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307582289|gb|ADN55688.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|319928241|gb|ADV78926.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 611

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           V+LVGP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 197 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKKN 252


>gi|332292732|ref|YP_004431341.1| ABC transporter related protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332170818|gb|AEE20073.1| ABC transporter related protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 227

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 9/50 (18%)

Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKS 78
                     R++L++          I+     P   V L+G +GSGKS
Sbjct: 5  VLELSHAAIYQRENLILSEVNVT----IE-----PGDFVYLIGKTGSGKS 45


>gi|327274098|ref|XP_003221815.1| PREDICTED: spermatogenesis-associated protein 5-like [Anolis
           carolinensis]
          Length = 876

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           P R V+L GP G+GK+ +A   +++  +  
Sbjct: 369 PPRGVLLYGPPGTGKTLIARAVANEVGAHV 398


>gi|320580148|gb|EFW94371.1| Putative ATPase of the AAA family [Pichia angusta DL-1]
          Length = 809

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 68/198 (34%), Gaps = 38/198 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTR 108
           P+ V++  GP G GK+ LA   +++S++                 S  A           
Sbjct: 551 PAGVLM-WGPPGCGKTLLAKAVANESKANFISVKGPELLNKYVGESERAVRQVFTRARAS 609

Query: 109 KPVLL--EDIDLL------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
            P ++  +++D L        ++        L   ++ ++      ++ A   P      
Sbjct: 610 VPCIIFFDELDALVPKRESSLSEASSRVVNTLLTELDGLNDRKGIFVIGATNRPDMIDPA 669

Query: 155 LPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----SL 209
           +  L   RL     +++    +    +++  + A     +D  +   +V   ER    S 
Sbjct: 670 M--LRPGRLDKTLYIELPNASERL--EILKTLIASNGTPLDSSVDLAVVAHDERCRNFSG 725

Query: 210 VFAEKLVDKMDNLALSRG 227
                LV +   +AL + 
Sbjct: 726 ADLSSLVREAGVIALKKK 743


>gi|318607289|emb|CBY28787.1| ISPsy4, transposition helper protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 241

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 21/107 (19%)

Query: 65  RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK----------- 109
           R +I VG  G+GK+ LA       +      RF N+   ++ + +D              
Sbjct: 99  RNIIFVGGPGTGKTHLATALGINAATNGFKIRFWNVLDLVNKLELDKESKQFKLTNQLTK 158

Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
              ++L+++  L F+      LFH+I+ +H++ +S+++T       W
Sbjct: 159 LDLIVLDELGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 204


>gi|310821762|ref|YP_003954120.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella
           aurantiaca DW4/3-1]
 gi|309394834|gb|ADO72293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 426

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 9/62 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L+GP+GSGK+ LA   +      RF N+  ++      T    + ED++ +  N   L
Sbjct: 122 ILLIGPTGSGKTLLAQSLA------RFLNVPFTIADATSLTEAGYVGEDVENIIQN---L 172

Query: 127 FH 128
            H
Sbjct: 173 LH 174


>gi|312078235|ref|XP_003141650.1| hypothetical protein LOAG_06066 [Loa loa]
 gi|307763184|gb|EFO22418.1| hypothetical protein LOAG_06066 [Loa loa]
          Length = 742

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 42  DLLV-HSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           D ++  ++ +Q + L    P  PS +VV+L GP+G+GK+ LA + +  +     S
Sbjct: 244 DFVLRSTSNQQQLILSSEKPRRPSHKVVLLAGPAGTGKTTLATLVAQHTGYRVVS 298


>gi|302760161|ref|XP_002963503.1| hypothetical protein SELMODRAFT_79603 [Selaginella moellendorffii]
 gi|300168771|gb|EFJ35374.1| hypothetical protein SELMODRAFT_79603 [Selaginella moellendorffii]
          Length = 545

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRST 91
           P R V+L GP G+GK+ LA   + ++ + 
Sbjct: 284 PCRGVLLFGPPGTGKTLLAKAVATEAGAN 312


>gi|296411170|ref|XP_002835307.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629084|emb|CAZ79464.1| unnamed protein product [Tuber melanosporum]
          Length = 389

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  +           L    I     ++ E
Sbjct: 169 VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 216


>gi|289523149|ref|ZP_06440003.1| holliday junction DNA helicase RuvB [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503692|gb|EFD24856.1| holliday junction DNA helicase RuvB [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 345

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 80/205 (39%), Gaps = 31/205 (15%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSLDSILID----TRKPV 111
              P    +  GP G GK+ LA + + +       T    I+++ D   I      +  +
Sbjct: 50  RDEPLDHTLFCGPPGLGKTTLAGVVAHEMGGELKTTTGPAISRTGDLAAILSSLKAKDVL 109

Query: 112 LLEDIDLLDFNDTQLFH------IINSIHQYD-----------SSLLMTARTFPVSWGVC 154
            +++I  L     ++ +       +N I                  L+ A T P      
Sbjct: 110 FIDEIHRLSPQVEEVLYSAMEDFFLNIIIGKGPMARSIKLTLPKFTLIGATTKPTLLSAP 169

Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214
           L     R +   + ++     D L +++V+  +  ++ +D++ A  I +R   +   A +
Sbjct: 170 L-----RGRFGIIEQLEYYSTDELAEILVRGASVLEVNLDEEAAMEIAKRSRGTPRIALR 224

Query: 215 LVDKMDNLALSRG-MGITRSLAAEV 238
           L+ ++ ++A ++    +T ++A + 
Sbjct: 225 LLKRVRDIAEAKKESKVTVAIAKKA 249


>gi|297600702|ref|NP_001049644.2| Os03g0264800 [Oryza sativa Japonica Group]
 gi|255674393|dbj|BAF11558.2| Os03g0264800 [Oryza sativa Japonica Group]
          Length = 958

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            +V++L GP G GK+ LA++ + K        I  S D     + +P +L+ I
Sbjct: 330 QKVLLLCGPPGLGKTTLAHV-AAKHCGYHVVEINAS-DDRSASSIEPKILDVI 380


>gi|239929769|ref|ZP_04686722.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438095|ref|ZP_06577485.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340990|gb|EFE67946.1| cell division protein ftsH-like protein [Streptomyces ghanaensis
           ATCC 14672]
          Length = 668

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    +S        + +      + +  +    N   +
Sbjct: 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 255


>gi|229543703|ref|ZP_04432763.1| Holliday junction DNA helicase RuvB [Bacillus coagulans 36D1]
 gi|229328123|gb|EEN93798.1| Holliday junction DNA helicase RuvB [Bacillus coagulans 36D1]
          Length = 332

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ LA + +++  +   +    +++           LE  ++L  ++ 
Sbjct: 56  VLLYGPPGLGKTTLATVIANEMGANIRTTSGPAIERPGDLASVLTALEPGEVLFIDEI 113


>gi|224045088|ref|XP_002199401.1| PREDICTED: vacuolar protein sorting factor 4B [Taeniopygia guttata]
          Length = 441

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GK+ LA   + ++ ++ F +++ S
Sbjct: 164 PWRGILLFGPPGTGKTYLAKAVATEANNSTFFSVSSS 200


>gi|223935333|ref|ZP_03627251.1| Holliday junction DNA helicase RuvB [bacterium Ellin514]
 gi|223896217|gb|EEF62660.1| Holliday junction DNA helicase RuvB [bacterium Ellin514]
          Length = 339

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           ++L GP G GK+ LA+I +    ++  S    +++           LE  D+L  ++ 
Sbjct: 56  ILLSGPPGLGKTTLASILAKAMGASFKSTSGPTIEKAADLAGLLTNLEAGDVLFIDEI 113


>gi|145423978|gb|ABP68657.1| truncated rep protein [Porcine circovirus 2]
          Length = 306

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  ++D   +       K  D       + V+++D    
Sbjct: 163 RDWKTNVHVIVGPPGCGKSKWAANFADPETTYWKPPRNKRWDG--YHGEEVVVIDDFYGW 220

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P+ W
Sbjct: 221 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEW 262


>gi|154334723|ref|XP_001563608.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060630|emb|CAM37642.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 214

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 50  EQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107
           E  +  ++     P+ V VIL GP GSGK+ LA   +        S     +  + +  
Sbjct: 36  EDPLAFLEKEFRRPTPVQVILTGPCGSGKTTLAAKLAAHYGIAHVSATVADVGDVAMPA 94


>gi|115376196|ref|ZP_01463438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366769|gb|EAU65762.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella
           aurantiaca DW4/3-1]
          Length = 320

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 9/62 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L+GP+GSGK+ LA   +      RF N+  ++      T    + ED++ +  N   L
Sbjct: 16  ILLIGPTGSGKTLLAQSLA------RFLNVPFTIADATSLTEAGYVGEDVENIIQN---L 66

Query: 127 FH 128
            H
Sbjct: 67  LH 68


>gi|108756903|ref|YP_632232.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus
           DK 1622]
 gi|108460783|gb|ABF85968.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus
           xanthus DK 1622]
          Length = 425

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 9/62 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L+GP+GSGK+ LA   +      RF N+  ++      T    + ED++ +  N   L
Sbjct: 122 ILLIGPTGSGKTLLAQSLA------RFLNVPFTIADATSLTEAGYVGEDVENIIQN---L 172

Query: 127 FH 128
            H
Sbjct: 173 LH 174


>gi|41614981|ref|NP_963479.1| proteasome-activating nucleotidase [Nanoarchaeum equitans Kin4-M]
 gi|40068705|gb|AAR39040.1| NEQ186 [Nanoarchaeum equitans Kin4-M]
          Length = 369

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           P + V+L GP G+GK+ +    +  + +T    +   L    I     ++ E  D
Sbjct: 142 PPKGVLLYGPPGTGKTLIGKALAKSANATFIYIVGSELVQKYIGEGAKLVKELFD 196


>gi|15609701|ref|NP_217080.1| glutamine-transport ATP-binding protein ABC transporter GlnQ
           [Mycobacterium tuberculosis H37Rv]
 gi|15842102|ref|NP_337139.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31793746|ref|NP_856239.1| glutamine-transport ATP-binding protein ABC transporter GlnQ
           [Mycobacterium bovis AF2122/97]
 gi|121638448|ref|YP_978672.1| putative glutamine-transport ATP-binding protein ABC transporter
           glnQ [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662403|ref|YP_001283926.1| glutamine ABC transporter ATP-binding protein GlnQ [Mycobacterium
           tuberculosis H37Ra]
 gi|148823759|ref|YP_001288513.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis F11]
 gi|167968826|ref|ZP_02551103.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis H37Ra]
 gi|215431521|ref|ZP_03429440.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis EAS054]
 gi|219558567|ref|ZP_03537643.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis T17]
 gi|224990942|ref|YP_002645629.1| putative glutamine-transport ATP-binding protein ABC transporter
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254232683|ref|ZP_04926010.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis C]
 gi|254366767|ref|ZP_04982810.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254551614|ref|ZP_05142061.1| putative glutamine-transport ATP-binding protein ABC transporter
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187578|ref|ZP_05765052.1| putative glutamine-transport ATP-binding protein ABC transporter
           [Mycobacterium tuberculosis CPHL_A]
 gi|260201691|ref|ZP_05769182.1| putative glutamine-transport ATP-binding protein ABC transporter
           [Mycobacterium tuberculosis T46]
 gi|260205885|ref|ZP_05773376.1| putative glutamine-transport ATP-binding protein ABC transporter
           [Mycobacterium tuberculosis K85]
 gi|289444100|ref|ZP_06433844.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis T46]
 gi|289448213|ref|ZP_06437957.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis CPHL_A]
 gi|289570733|ref|ZP_06450960.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis T17]
 gi|289575272|ref|ZP_06455499.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis K85]
 gi|289754682|ref|ZP_06514060.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis EAS054]
 gi|306776838|ref|ZP_07415175.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu001]
 gi|306780602|ref|ZP_07418939.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu002]
 gi|306785365|ref|ZP_07423687.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu003]
 gi|306789965|ref|ZP_07428287.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu004]
 gi|306794045|ref|ZP_07432347.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu005]
 gi|306798444|ref|ZP_07436746.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu006]
 gi|306804323|ref|ZP_07440991.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu008]
 gi|306807638|ref|ZP_07444306.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu007]
 gi|306969839|ref|ZP_07482500.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu009]
 gi|306972952|ref|ZP_07485613.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu010]
 gi|307080663|ref|ZP_07489833.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu011]
 gi|307085250|ref|ZP_07494363.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu012]
 gi|54040539|sp|P63402|Y2593_MYCBO RecName: Full=Uncharacterized ABC transporter ATP-binding protein
           Mb2593
 gi|54042820|sp|P63401|Y2564_MYCTU RecName: Full=Uncharacterized ABC transporter ATP-binding protein
           Rv2564/MT2640
 gi|1460076|emb|CAB01051.1| PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER
           GLNQ [Mycobacterium tuberculosis H37Rv]
 gi|13882384|gb|AAK46953.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31619340|emb|CAD94778.1| PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER
           GLNQ [Mycobacterium bovis AF2122/97]
 gi|121494096|emb|CAL72574.1| Probable glutamine-transport ATP-binding protein ABC transporter
           glnQ [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601742|gb|EAY60752.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis C]
 gi|134152278|gb|EBA44323.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148506555|gb|ABQ74364.1| glutamine ABC transporter ATP-binding protein GlnQ [Mycobacterium
           tuberculosis H37Ra]
 gi|148722286|gb|ABR06911.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis F11]
 gi|224774055|dbj|BAH26861.1| putative glutamine-transport ATP-binding protein ABC transporter
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289417019|gb|EFD14259.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis T46]
 gi|289421171|gb|EFD18372.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis CPHL_A]
 gi|289539703|gb|EFD44281.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis K85]
 gi|289544487|gb|EFD48135.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis T17]
 gi|289695269|gb|EFD62698.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis EAS054]
 gi|308214764|gb|EFO74163.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu001]
 gi|308326537|gb|EFP15388.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu002]
 gi|308329958|gb|EFP18809.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu003]
 gi|308333575|gb|EFP22426.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu004]
 gi|308337602|gb|EFP26453.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu005]
 gi|308341268|gb|EFP30119.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu006]
 gi|308345959|gb|EFP34810.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu007]
 gi|308349075|gb|EFP37926.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu008]
 gi|308352648|gb|EFP41499.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu009]
 gi|308357643|gb|EFP46494.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu010]
 gi|308361585|gb|EFP50436.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu011]
 gi|308365204|gb|EFP54055.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis SUMu012]
 gi|323718837|gb|EGB27993.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis CDC1551A]
          Length = 330

 Score = 38.2 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 30/106 (28%)

Query: 42  DLLV-HSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98
           DL+V +S+   AVR ID       P  +VIL+GPSG GK+ L +                
Sbjct: 8   DLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSC--------------- 52

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDTQL-----------FHIINSI 133
            L  IL      +  +D+D+       L           F   N +
Sbjct: 53  -LGGILRPKSGSIKFDDVDITTLEGAALAKYRRDKVGIVFQAFNLV 97


>gi|312382549|gb|EFR27969.1| hypothetical protein AND_04733 [Anopheles darlingi]
          Length = 433

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P + ++L GP G+GKS LA   + ++ S+ F  ++ S
Sbjct: 155 PWKGILLFGPPGTGKSYLAKAVATEANSSTFFAVSSS 191


>gi|312892031|ref|ZP_07751532.1| Holliday junction DNA helicase RuvB [Mucilaginibacter paludis DSM
           18603]
 gi|311295528|gb|EFQ72696.1| Holliday junction DNA helicase RuvB [Mucilaginibacter paludis DSM
           18603]
          Length = 340

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ L++I +++  S         LD           LE  D+L  ++ 
Sbjct: 58  VLLHGPPGLGKTTLSHIIANEMGSGIKITSGPVLDKPGDLAGLLTNLESGDILFIDEI 115


>gi|311029187|ref|ZP_07707277.1| ABC transporter, ATP-binding protein [Bacillus sp. m3-13]
          Length = 227

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 16/61 (26%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            V ++GPSGSGKS L ++                L  +   +   VL+++ D+   N+TQ
Sbjct: 35  FVAIIGPSGSGKSTLLHL----------------LGGVDRPSSGKVLVDNTDIYQLNETQ 78

Query: 126 L 126
           L
Sbjct: 79  L 79


>gi|296222795|ref|XP_002807554.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated
           protein 4B-like [Callithrix jacchus]
          Length = 693

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F +I+ S
Sbjct: 462 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 498


>gi|295837282|ref|ZP_06824215.1| cell division protein [Streptomyces sp. SPB74]
 gi|295826448|gb|EDY46884.2| cell division protein [Streptomyces sp. SPB74]
          Length = 685

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    +S        + +      + +  +    N   +
Sbjct: 207 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 266


>gi|293189654|ref|ZP_06608371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           odontolyticus F0309]
 gi|292821392|gb|EFF80334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces
           odontolyticus F0309]
          Length = 419

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +             A +    + +  + +LL  I   D +
Sbjct: 115 ILLLGPTGTGKTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGD 172


>gi|283850915|ref|ZP_06368201.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B]
 gi|283573838|gb|EFC21812.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B]
          Length = 605

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 47/199 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L+GP G+GK+ LA   + +++   FS        + +                     
Sbjct: 192 VLLIGPPGTGKTLLARAVAGEAQVPFFSISGSEFVEMFVGVGAARVRELFVQAKEKAPCI 251

Query: 111 VLLEDIDLLDFN------------DTQLFHIINSIHQYD-----SSLLMTARTFPVSWGV 153
           + ++++D +  +            +  L  +   +           ++M A   P +   
Sbjct: 252 IFIDELDAIGKSRAGAIVGGHDEREQTLNQL--LVEMDGFDPRVGVIIMAATNRPETLDP 309

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+A      V +  PD    + ++    A   I +   +   ++ R      
Sbjct: 310 AL------LRAGRFDRQVLVDKPDVAGRDAILRVHAAK--IVLGNDVDLSVIARKTPGFS 361

Query: 211 FAEKLVDKMDNLALSRGMG 229
            A  L + ++  AL     
Sbjct: 362 GA-DLANVINEAALLAARK 379


>gi|257458849|ref|ZP_05623972.1| holliday junction DNA helicase RuvB [Campylobacter gracilis RM3268]
 gi|257443837|gb|EEV18957.1| holliday junction DNA helicase RuvB [Campylobacter gracilis RM3268]
          Length = 338

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+  GP G GK+ LA+I + +  +      A  ++           L+  D+L  ++ 
Sbjct: 55  VLFYGPPGLGKTTLAHIIAAQMGAAIKVTAAPMIEKAGDLAAILTNLQSGDVLFIDEI 112


>gi|229918407|ref|YP_002887053.1| Holliday junction DNA helicase RuvB [Exiguobacterium sp. AT1b]
 gi|259495666|sp|C4L523|RUVB_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|229469836|gb|ACQ71608.1| Holliday junction DNA helicase RuvB [Exiguobacterium sp. AT1b]
          Length = 333

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ LA I +++      +    +++           LE  D+L  ++ 
Sbjct: 56  VLLYGPPGLGKTTLAQIIANEMGVGIKTTAGPAIERPGDLAAILSTLEPGDVLFIDEI 113


>gi|237745684|ref|ZP_04576164.1| peptidase M41 [Oxalobacter formigenes HOxBLS]
 gi|229377035|gb|EEO27126.1| peptidase M41 [Oxalobacter formigenes HOxBLS]
          Length = 627

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKS 88
           R ++LVGP G+GK+ LA   + ++
Sbjct: 191 RGLLLVGPPGTGKTLLARAIAGEA 214


>gi|225715516|gb|ACO13604.1| 26S protease regulatory subunit S10B [Esox lucius]
          Length = 389

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P +  +L GP G+GK+ LA   + +        ++ S+    I     ++ E        
Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVTSQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217

Query: 123 DTQLFHIINSIHQYD 137
                 + N    + 
Sbjct: 218 ------MFNYARDHQ 226


>gi|223647704|gb|ACN10610.1| Vacuolar protein sorting-associating protein 4B [Salmo salar]
          Length = 527

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F +I+ S
Sbjct: 249 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 285


>gi|198418753|ref|XP_002130650.1| PREDICTED: similar to nuclear VCP-like [Ciona intestinalis]
          Length = 779

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR 89
           P R ++L GP G GK+ L N  + +  
Sbjct: 245 PPRGILLHGPPGCGKTLLGNAIAGQLG 271



 Score = 37.8 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 49  IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108
              A   +    +     V+L GP G GK+ LA   +++S     S     L ++ +   
Sbjct: 520 NPMAFASLGLSRA---SGVLLAGPPGCGKTLLAKAIANESGINFISVKGPELLNMYVGES 576

Query: 109 KPVL 112
           +  +
Sbjct: 577 ERAV 580


>gi|195330288|ref|XP_002031836.1| GM26216 [Drosophila sechellia]
 gi|194120779|gb|EDW42822.1| GM26216 [Drosophila sechellia]
          Length = 389

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P R V+L GP G GK+ LA   +  + ++    +        +    P ++ DI  L   
Sbjct: 169 PPRGVLLFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYL-GEGPRMVRDIFRLAKQ 227


>gi|182437881|ref|YP_001825600.1| putative cell division protein FtsH [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326778517|ref|ZP_08237782.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus
           XylebKG-1]
 gi|178466397|dbj|BAG20917.1| putative cell division protein FtsH [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326658850|gb|EGE43696.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus
           XylebKG-1]
          Length = 688

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    +S        + +      + +  +    N   +
Sbjct: 209 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 268


>gi|168009415|ref|XP_001757401.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691524|gb|EDQ77886.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 373

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   + ++ +   +
Sbjct: 103 PCRGLLLFGPPGTGKTMLAKAVATEAGANFIN 134


>gi|220927298|ref|YP_002502600.1| AAA family ATPase, CDC48 subfamily [Methylobacterium nodulans ORS
           2060]
 gi|219951905|gb|ACL62297.1| AAA family ATPase, CDC48 subfamily [Methylobacterium nodulans ORS
           2060]
          Length = 757

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   ++++ +  F 
Sbjct: 237 PPKGVLLYGPPGTGKTLLARAVANETEAQFFH 268



 Score = 35.9 bits (82), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P++  +L GP G+GK+ LA   + ++ +   +  +  L
Sbjct: 509 PAKGFLLFGPPGTGKTLLAKAVAREASANFVATKSSDL 546


>gi|157964546|ref|YP_001499370.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           massiliae MTU5]
 gi|239977444|sp|A8F1N7|MIAA_RICM5 RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|157844322|gb|ABV84823.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           massiliae MTU5]
          Length = 363

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            ++IL GP+ SGKS L +  +        + +  +    I I T  P          +  
Sbjct: 59  SIIILCGPTASGKSYLGHELAKAYNGEIINIDSMQVYKEIPIITASP-------PKSYKT 111

Query: 124 TQLFHIIN 131
             L+H+ N
Sbjct: 112 EILYHLYN 119


>gi|189230136|ref|NP_001121392.1| hypothetical protein LOC100158480 [Xenopus (Silurana) tropicalis]
 gi|156914745|gb|AAI52664.1| Vps4b protein [Danio rerio]
 gi|183985590|gb|AAI66090.1| LOC100158480 protein [Xenopus (Silurana) tropicalis]
          Length = 437

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F +I+ S
Sbjct: 159 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 195


>gi|155369339|ref|NP_001094432.1| vacuolar protein sorting 4 homolog b-like [Danio rerio]
 gi|148726388|emb|CAN88476.1| novel protein simlar to vertebrate vacuolar protein sorting 4
           homolog B (S. cerevisiae) (VPS4B, zgc:63682) [Danio
           rerio]
          Length = 437

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F +I+ S
Sbjct: 159 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 195


>gi|124009494|ref|ZP_01694169.1| ATPase, AAA family [Microscilla marina ATCC 23134]
 gi|123984840|gb|EAY24808.1| ATPase, AAA family [Microscilla marina ATCC 23134]
          Length = 429

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 18/129 (13%)

Query: 65  RVVILVGPSGSGKSCLANI---------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
             +IL GP G GK+ LA +         ++  + ++    + + ++         + +++
Sbjct: 48  PSMILWGPPGVGKTTLARLIGNHVKTPFFTLSAINSGVKEVRQVIEKAKTRAGSILFIDE 107

Query: 116 IDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           I   +      L        +     L+ A T   S+ V    L SR     +  +    
Sbjct: 108 IHRFNKAQQDALL----GAVETGLITLIGATTENPSFEVISA-LQSR---CQIYILQPLS 159

Query: 175 DDFLEKVIV 183
            + L +++ 
Sbjct: 160 PETLVEMLE 168


>gi|110742410|dbj|BAE99126.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1188

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 63   PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
            P++ ++L GP G+GK+ LA   + ++ +   +
Sbjct: 997  PTKGILLFGPPGTGKTMLAKAVATEAGANFIN 1028


>gi|47219310|emb|CAG10939.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 452

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F +I+ S
Sbjct: 174 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 210


>gi|47228222|emb|CAG07617.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 381

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F +I+ S
Sbjct: 160 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 196


>gi|15892579|ref|NP_360293.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           conorii str. Malish 7]
 gi|126302569|sp|Q92HW4|MIAA_RICCN RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|15619744|gb|AAL03194.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           conorii str. Malish 7]
          Length = 363

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            ++IL GP+ SGKS L +  +        + +  +    I I T  P          +  
Sbjct: 59  SIIILCGPTASGKSYLGHELAKAYNGEIINIDSMQVYKEIPIITASP-------PKSYKT 111

Query: 124 TQLFHIIN 131
             L+H+ N
Sbjct: 112 EILYHLYN 119


>gi|15825806|pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
          Length = 334

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G G++ LA+I + + ++         L            LE  D+L  ++   
Sbjct: 54  VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111

Query: 127 FHIINSIHQYDSSLLMTA 144
            H +N   +    LL +A
Sbjct: 112 -HRLNKAVEE---LLYSA 125


>gi|55821924|ref|YP_140366.1| recombination factor protein RarA [Streptococcus thermophilus LMG
           18311]
 gi|55823843|ref|YP_142284.1| recombination factor protein RarA [Streptococcus thermophilus
           CNRZ1066]
 gi|116628622|ref|YP_821241.1| recombination factor protein RarA [Streptococcus thermophilus
           LMD-9]
 gi|55737909|gb|AAV61551.1| chromosome segregation helicase [Streptococcus thermophilus LMG
           18311]
 gi|55739828|gb|AAV63469.1| chromosome segregation helicase [Streptococcus thermophilus
           CNRZ1066]
 gi|116101899|gb|ABJ67045.1| Recombination protein MgsA [Streptococcus thermophilus LMD-9]
 gi|312279275|gb|ADQ63932.1| ATPase AAA family recombination factor RarA [Streptococcus
           thermophilus ND03]
          Length = 422

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 22/166 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +  ++               + +  +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++    ++ 
Sbjct: 102 RLDKAKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNED 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217
           +++ I+ +  D  R     + +D     +I       L  A   +D
Sbjct: 155 IKEAILNVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLD 200


>gi|157828528|ref|YP_001494770.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933244|ref|YP_001650033.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           rickettsii str. Iowa]
 gi|239977445|sp|B0BXQ1|MIAA_RICRO RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|239977446|sp|A8GS87|MIAA_RICRS RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|157801009|gb|ABV76262.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908331|gb|ABY72627.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           rickettsii str. Iowa]
          Length = 363

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            ++IL GP+ SGKS L +  +        + +  +    I I T  P          +  
Sbjct: 59  SIIILCGPTASGKSYLGHELAKAYNGEIINIDSMQVYKEIPIITASP-------PKSYKT 111

Query: 124 TQLFHIIN 131
             L+H+ N
Sbjct: 112 EILYHLYN 119


>gi|34580437|ref|ZP_00141917.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           sibirica 246]
 gi|28261822|gb|EAA25326.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Rickettsia
           sibirica 246]
          Length = 363

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            ++IL GP+ SGKS L +  +        + +  +    I I T  P          +  
Sbjct: 59  SIIILCGPTASGKSYLGHELAKAYNGEIINIDSMQVYKEIPIITASP-------PKSYKT 111

Query: 124 TQLFHIIN 131
             L+H+ N
Sbjct: 112 EILYHLYN 119


>gi|332982455|ref|YP_004463896.1| Holliday junction DNA helicase subunit RuvB [Mahella australiensis
           50-1 BON]
 gi|332700133|gb|AEE97074.1| Holliday junction DNA helicase subunit RuvB [Mahella australiensis
           50-1 BON]
          Length = 333

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI +++            ++           + + D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLANIIANEMGVNIRITSGPVIERAGDLAAILTNMAEYDVLFIDEI-- 113

Query: 127 FHIINSIHQY 136
            H +N   + 
Sbjct: 114 -HRLNRAVEE 122


>gi|318605380|emb|CBY26878.1| ISPsy4, transposition helper protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 241

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 21/103 (20%)

Query: 65  RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK----------- 109
           R +I VG  G+GK+ LA       +      RF N+   ++ + +D              
Sbjct: 99  RNIIFVGGPGTGKTHLATALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 158

Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTF 147
              ++L+D+  L F+      LFH+I+ +H++ +S+++T    
Sbjct: 159 LDLIVLDDLGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLA 200


>gi|296117359|ref|ZP_06835949.1| cell division protein ftsH [Gluconacetobacter hansenii ATCC 23769]
 gi|295976125|gb|EFG82913.1| cell division protein ftsH [Gluconacetobacter hansenii ATCC 23769]
          Length = 644

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 47/198 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 192 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKAAPCI 251

Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGV 153
           + +++ID +            ++ +    +N +          +  +L+ A   P     
Sbjct: 252 IFIDEIDAVGRHRGAGLGGGNDERE--QTLNQMLVEMDGFDSNEGVILIAATNRPDVLDP 309

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       V +  PD    EK++      R++ +   +   ++ R      
Sbjct: 310 AL------LRPGRFDRQVVVPNPDVAGREKILRVHM--RKVPLASDVDPKVIARGTPGFS 361

Query: 211 FAEKLVDKMDNLALSRGM 228
            A  L + ++  AL    
Sbjct: 362 GA-DLANLVNEAALMAAR 378


>gi|302504527|ref|XP_003014222.1| hypothetical protein ARB_07527 [Arthroderma benhamiae CBS 112371]
 gi|291177790|gb|EFE33582.1| hypothetical protein ARB_07527 [Arthroderma benhamiae CBS 112371]
          Length = 835

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ +A   + +S+ST FS  A SL S
Sbjct: 579 PARGMLLFGPPGTGKTMIARAVATESQSTFFSVSASSLAS 618


>gi|302869358|ref|YP_003837995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Micromonospora aurantiaca ATCC 27029]
 gi|315504167|ref|YP_004083054.1| ATP-dependent clp protease, ATP-binding subunit clpx
           [Micromonospora sp. L5]
 gi|302572217|gb|ADL48419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Micromonospora aurantiaca ATCC 27029]
 gi|315410786|gb|ADU08903.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Micromonospora sp. L5]
          Length = 430

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+G GK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 118 ILLLGPTGCGKTHLAQTLA------RMLNVPFAIADATALTEAGYVGEDVENI 164


>gi|260893890|ref|YP_003239987.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4]
 gi|260866031|gb|ACX53137.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4]
          Length = 639

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 41/195 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+L GP G+GK+ +A   + ++    FS        + +                     
Sbjct: 195 VLLYGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEMFVGVGAARVRDLFEQAKKNAPCI 254

Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           V +++ID +               +  L  +   ++  +  +  +++ A   P      L
Sbjct: 255 VFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNPNEGIIVIAATNRPDILDPAL 314

Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAE 213
             L   R     VV +  PD +  + ++      R   + + +    + +R       A 
Sbjct: 315 --LRPGRFDRQIVVDM--PDINGRKAILRVHT--RGKPLAEDVDLDILARRTP-GFSGA- 366

Query: 214 KLVDKMDNLALSRGM 228
            L + ++  AL    
Sbjct: 367 DLANVVNEAALLAAR 381


>gi|239942227|ref|ZP_04694164.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL
           15998]
 gi|291445681|ref|ZP_06585071.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998]
 gi|291348628|gb|EFE75532.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998]
          Length = 673

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    +S        + +      + +  +    N   +
Sbjct: 198 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 257


>gi|226290113|gb|EEH45597.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis
           Pb18]
          Length = 813

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 14/76 (18%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+LVGP G+GK+ LA   + ++    F       D + +      + E            
Sbjct: 381 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRE------------ 428

Query: 127 FHIINSIHQYDSSLLM 142
             + N       +++ 
Sbjct: 429 --LFNQARAKAPAIIF 442


>gi|221110405|ref|XP_002154716.1| PREDICTED: similar to proteasome 26S ATPase subunit 2 [Hydra
           magnipapillata]
          Length = 431

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+  A   ++++ +     I   L    +     ++ E
Sbjct: 205 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRE 256


>gi|242209591|ref|XP_002470642.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730321|gb|EED84180.1| predicted protein [Postia placenta Mad-698-R]
          Length = 876

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 73/216 (33%), Gaps = 42/216 (19%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112
           P + V+L GP G+GK+  A   ++++ +T    I   L    +     ++          
Sbjct: 238 PPKGVLLFGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARSK 297

Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
                  +++D +                  +  +IN +       +  ++ A   P + 
Sbjct: 298 KACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 357

Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM--ERS 208
              L  L   RL     V+ SLPD +    ++      R +  ++ +   ++ R+    +
Sbjct: 358 DPAL--LRPGRLD--RRVEFSLPDVEGRASILRIHA--RSMSCERDIRFDLIARLCPNTT 411

Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244
                 +  +    A+     +  +   + L   ++
Sbjct: 412 GAELRSVATEAGMFAIRARRKV--ATERDFLDAVEK 445


>gi|217076556|ref|YP_002334272.1| putative Cell division protease FtsH-like protein [Thermosipho
           africanus TCF52B]
 gi|217036409|gb|ACJ74931.1| putative Cell division protease FtsH-like protein [Thermosipho
           africanus TCF52B]
          Length = 618

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 14/70 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+LVGP G+GK+ LA   + ++    F         + +      + +            
Sbjct: 196 VLLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRD------------ 243

Query: 127 FHIINSIHQY 136
             + N   + 
Sbjct: 244 --LFNKAKES 251


>gi|154509332|ref|ZP_02044974.1| hypothetical protein ACTODO_01857 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798966|gb|EDN81386.1| hypothetical protein ACTODO_01857 [Actinomyces odontolyticus ATCC
           17982]
          Length = 419

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +             A +    + +  + +LL  I   D +
Sbjct: 115 ILLLGPTGTGKTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGD 172


>gi|154418550|ref|XP_001582293.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121916527|gb|EAY21307.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 680

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI-----------AKSLDSILIDTRKPV 111
           P +  IL GPSGSGK+ L +   +++ S  F+             A          R  +
Sbjct: 212 PRKSFILHGPSGSGKTVLTSAIVNQNTSLSFALFSIPSILSGTFGAAERSLRAARNRDII 271

Query: 112 LLEDIDLLDFND 123
           +LE++++L  ++
Sbjct: 272 ILENMEVLSSDE 283


>gi|150021633|ref|YP_001306987.1| phosphoribulokinase/uridine kinase [Thermosipho melanesiensis
           BI429]
 gi|149794154|gb|ABR31602.1| phosphoribulokinase/uridine kinase [Thermosipho melanesiensis
           BI429]
          Length = 559

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----DIDLLD 120
           R+V++ GPS SGK+  +     + R++    +  SLD   +D  K  + E    D + L+
Sbjct: 295 RLVLIAGPSSSGKTTFSKRLMVQLRASGLRPVTISLDDYFVDREKTPVDENGKPDFEALE 354

Query: 121 FNDTQLFH 128
             D +LF+
Sbjct: 355 AIDVELFN 362


>gi|119025823|ref|YP_909668.1| Holliday junction DNA helicase RuvB [Bifidobacterium adolescentis
           ATCC 15703]
 gi|171473027|sp|A1A1K3|RUVB_BIFAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|118765407|dbj|BAF39586.1| holliday junction ATP-dependent DNA helicase ruvB [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 362

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 30/181 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P   ++L GP G GK+ LA I +++        S          +     +D  + + ++
Sbjct: 73  PPDHILLAGPPGLGKTTLAMIVANELEVPIRVTSGPAIQHAGDLASILSSLDAGEVLFID 132

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD---------------- 157
           +I  L     +L +I     +     +M  +     S  + LP                 
Sbjct: 133 EIHRLPRAAEELLYI---AMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSP 189

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L +R      +     ++  LEK+I +  A   I ++   A  +  R   +   A +L+ 
Sbjct: 190 LRARFGFTAHLDFYPHEE--LEKLIERSSAVLGIQLEDGAARQLAMRSRGTPRIANRLLR 247

Query: 218 K 218
           +
Sbjct: 248 R 248


>gi|145596009|ref|YP_001160306.1| ATP-dependent protease ATP-binding subunit ClpX [Salinispora
           tropica CNB-440]
 gi|189044149|sp|A4XAH9|CLPX_SALTO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|145305346|gb|ABP55928.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salinispora
           tropica CNB-440]
          Length = 429

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           ++L+GP+G GK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 116 ILLLGPTGCGKTHLAQTLA------RMLNVPFAIADATALTEAGYVGEDVENI 162


>gi|20260310|gb|AAM13053.1| unknown protein [Arabidopsis thaliana]
 gi|23198394|gb|AAN15724.1| unknown protein [Arabidopsis thaliana]
          Length = 691

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 26  EQLF--FSFPRCLGISRDDLLVHSAI---EQAVRLIDSWPSW--PSRVVILVGPSGSGKS 78
            QL       R   ++ +DL V           RL+     +  P R++ ++GPSGSGKS
Sbjct: 11  RQLPSKLEMSRGAYLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKS 70

Query: 79  CLANIWSDK-------SRSTRFSNIAKSLDSILID 106
            L +  + +       + +   +     LD  L+ 
Sbjct: 71  TLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVA 105


>gi|15226227|ref|NP_178241.1| ABC transporter family protein [Arabidopsis thaliana]
 gi|42570637|ref|NP_973392.1| ABC transporter family protein [Arabidopsis thaliana]
 gi|75339027|sp|Q9ZU35|AB7G_ARATH RecName: Full=ABC transporter G family member 7; Short=ABC
           transporter ABCG.7; Short=AtABCG7; AltName:
           Full=White-brown complex homolog protein 7; Short=AtWBC7
 gi|4262239|gb|AAD14532.1| putative membrane transporter [Arabidopsis thaliana]
 gi|330250339|gb|AEC05433.1| ABC transporter G family member 7 [Arabidopsis thaliana]
 gi|330250341|gb|AEC05435.1| ABC transporter G family member 7 [Arabidopsis thaliana]
          Length = 725

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R++ ++GPSGSGK+ L N+ + +
Sbjct: 100 PGRLLAIMGPSGSGKTTLLNVLAGQ 124


>gi|22331230|ref|NP_188746.2| ABC transporter family protein [Arabidopsis thaliana]
 gi|109896158|sp|Q8RWI9|AB15G_ARATH RecName: Full=ABC transporter G family member 15; Short=ABC
           transporter ABCG.15; Short=AtABCG15; AltName:
           Full=White-brown complex homolog protein 15;
           Short=AtWBC15; AltName: Full=White-brown complex homolog
           protein 22; Short=AtWBC22
 gi|332642938|gb|AEE76459.1| ABC transporter G family member 15 [Arabidopsis thaliana]
          Length = 691

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 26  EQLF--FSFPRCLGISRDDLLVHSAI---EQAVRLIDSWPSW--PSRVVILVGPSGSGKS 78
            QL       R   ++ +DL V           RL+     +  P R++ ++GPSGSGKS
Sbjct: 11  RQLPSKLEMSRGAYLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKS 70

Query: 79  CLANIWSDK-------SRSTRFSNIAKSLDSILID 106
            L +  + +       + +   +     LD  L+ 
Sbjct: 71  TLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVA 105


>gi|11994269|dbj|BAB01452.1| ABC transporter-like protein [Arabidopsis thaliana]
          Length = 594

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 26  EQLF--FSFPRCLGISRDDLLVHSAI---EQAVRLIDSWPSW--PSRVVILVGPSGSGKS 78
            QL       R   ++ +DL V           RL+     +  P R++ ++GPSGSGKS
Sbjct: 11  RQLPSKLEMSRGAYLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKS 70

Query: 79  CLANIWSDK-------SRSTRFSNIAKSLDSILID 106
            L +  + +       + +   +     LD  L+ 
Sbjct: 71  TLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVA 105


>gi|134114508|ref|XP_774084.1| hypothetical protein CNBH0090 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256716|gb|EAL19437.1| hypothetical protein CNBH0090 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1628

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115
            R+ +L GP GSGK+ L   +  +++  + S +A       +    P+LL++
Sbjct: 774 GRLSLLCGPLGSGKTLLLRAFLGEAKVEKCSVLAPKS----LPDATPILLDN 821


>gi|328708809|ref|XP_003243803.1| PREDICTED: putative ribosome biogenesis ATPase nvl-like
           [Acyrthosiphon pisum]
          Length = 734

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           P + V+L GP G GK+ L    +  +     + +A  L S  +   + 
Sbjct: 492 PPKGVLLYGPPGCGKTSLVRSIASSANLNVLTAMAAELYSPYLGVTEA 539


>gi|322695402|gb|EFY87211.1| hypothetical protein MAC_06771 [Metarhizium acridum CQMa 102]
          Length = 958

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 18/25 (72%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           ++++L GP G GK+ LA++ + ++ 
Sbjct: 278 KILMLTGPPGLGKTTLAHVCAKQAG 302


>gi|306832634|ref|ZP_07465773.1| AAA family ATPase [Streptococcus bovis ATCC 700338]
 gi|304425242|gb|EFM28369.1| AAA family ATPase [Streptococcus bovis ATCC 700338]
          Length = 422

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 25/176 (14%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKS-------LDSILIDTRKPVLLEDID 117
           +IL GP G GK+ +A+  +   K     F+    S        +         +LL++I 
Sbjct: 42  MILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDSKKRLQEIAEEAKFSGGLVLLLDEIH 101

Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177
            LD            + +  + +++ A T    + V  P + SR     + ++     D 
Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSTDD 154

Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227
           ++  +    +D  R     + ID     +I               + +D   +S  
Sbjct: 155 IKTALQTALSDKERGFDFDVDIDADALDFIATATN---GDLRSAFNSLDLAVMSTK 207


>gi|302753920|ref|XP_002960384.1| hypothetical protein SELMODRAFT_139726 [Selaginella moellendorffii]
 gi|302767824|ref|XP_002967332.1| hypothetical protein SELMODRAFT_144519 [Selaginella moellendorffii]
 gi|300165323|gb|EFJ31931.1| hypothetical protein SELMODRAFT_144519 [Selaginella moellendorffii]
 gi|300171323|gb|EFJ37923.1| hypothetical protein SELMODRAFT_139726 [Selaginella moellendorffii]
          Length = 628

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 211 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 257


>gi|302791962|ref|XP_002977747.1| hypothetical protein SELMODRAFT_271275 [Selaginella moellendorffii]
 gi|300154450|gb|EFJ21085.1| hypothetical protein SELMODRAFT_271275 [Selaginella moellendorffii]
          Length = 449

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T FS  A SL S  +   + ++
Sbjct: 210 PARGLLLFGPPGNGKTMLAKAVASESTATFFSISASSLTSKWVGEAEKLV 259


>gi|302795536|ref|XP_002979531.1| hypothetical protein SELMODRAFT_271379 [Selaginella moellendorffii]
 gi|300152779|gb|EFJ19420.1| hypothetical protein SELMODRAFT_271379 [Selaginella moellendorffii]
          Length = 449

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P+R ++L GP G+GK+ LA   + +S +T FS  A SL S  +   + ++
Sbjct: 210 PARGLLLFGPPGNGKTMLAKAVASESTATFFSISASSLTSKWVGEAEKLV 259


>gi|297836828|ref|XP_002886296.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332136|gb|EFH62555.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 718

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSR--------STRFSNIAKSLDSILID-------- 106
           P    +L GP G GKS LA   ++++         +   S ++   +  + +        
Sbjct: 180 PISGFLLHGPPGCGKSTLACAIANETGVPFYMISAAELVSGVSGESEENIRELFFKAYRT 239

Query: 107 TRKPVLLEDIDLLD 120
               + +++ID + 
Sbjct: 240 APSIIFIDEIDAIA 253


>gi|283779444|ref|YP_003370199.1| ATPase AAA [Pirellula staleyi DSM 6068]
 gi|283437897|gb|ADB16339.1| AAA ATPase central domain protein [Pirellula staleyi DSM 6068]
          Length = 441

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 28/198 (14%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
             V+  GP G GK+ LA + +  S+       A +     +        +++    F  T
Sbjct: 53  GSVLFYGPPGCGKTTLARLLAVASKRRFVQLSAVTSGVKELREMLEKARDELSTGGFR-T 111

Query: 125 QLF--HIINSIHQYDSSLL---------MTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            LF   I         +LL         +   T    +      L SR   + + +    
Sbjct: 112 LLFVDEIHRYSKSQQDALLPDVEEGIVTLVGATTSNPFFAVNAALVSR---SQIFQFLPL 168

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS- 225
             D ++ ++ +  ADR        + ++ + A ++    E     A + +  ++   LS 
Sbjct: 169 SVDDIKTLLARALADRSRGLGSHEVILEPEAAEFLATSSE---GDARRALTALEIGVLSS 225

Query: 226 --RGMGITRSLAAEVLKE 241
             R +  TR LA E L++
Sbjct: 226 SERPLRFTRELAEESLQK 243


>gi|242033579|ref|XP_002464184.1| hypothetical protein SORBIDRAFT_01g013750 [Sorghum bicolor]
 gi|241918038|gb|EER91182.1| hypothetical protein SORBIDRAFT_01g013750 [Sorghum bicolor]
          Length = 420

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G+GK+ LA   +  + +     +        +     ++ +
Sbjct: 200 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRD 251


>gi|298346556|ref|YP_003719243.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 43063]
 gi|298236617|gb|ADI67749.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           ATCC 43063]
          Length = 420

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +   K         A +    + +  + +LL  I   D +
Sbjct: 114 ILLLGPTGTGKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGD 171


>gi|227202564|dbj|BAH56755.1| AT5G42270 [Arabidopsis thaliana]
          Length = 574

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 287 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 333


>gi|226306471|ref|YP_002766431.1| ATPase [Rhodococcus erythropolis PR4]
 gi|226185588|dbj|BAH33692.1| putative ATPase [Rhodococcus erythropolis PR4]
          Length = 479

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 23/154 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA++ S  +   RF  ++ +L + + + R  + L    LL+   T L
Sbjct: 92  VLLYGPPGTGKTTLASLISGATG-RRFEALS-ALSAGVKEVRGVIELARRRLLNGEQTVL 149

Query: 127 F----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174
           F    H  +        +  +    LL+ A T   S+ V    L SR   + V+++    
Sbjct: 150 FIDEVHRFSKTQQDALLAAVENRIVLLVGATTENPSFSVVSA-LLSR---SLVLQLQSLT 205

Query: 175 DDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203
              +++++ +   D R     I ID     ++V+
Sbjct: 206 AADVQELLERAVTDERGFGGAIAIDDDAMEHLVR 239


>gi|225873635|ref|YP_002755094.1| ATP-dependent metalloprotease FtsH [Acidobacterium capsulatum ATCC
           51196]
 gi|310943113|sp|C1F8X6|FTSH_ACIC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|225793772|gb|ACO33862.1| ATP-dependent metalloprotease FtsH [Acidobacterium capsulatum ATCC
           51196]
          Length = 639

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 192 VLLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCI 251

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++     D  +L+ A   P      L
Sbjct: 252 IFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEANDGVILVAATNRPDVLDPAL 311

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD    E+V+      +++ + + +   ++ R       A
Sbjct: 312 ------LRPGRFDRRVVVGRPDVRGREEVLRVHA--KKVPLAEDVDLRVLARGTPGFSGA 363

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  ALS    
Sbjct: 364 -DLANMVNEGALSAARA 379


>gi|225352126|ref|ZP_03743149.1| hypothetical protein BIFPSEUDO_03741 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157373|gb|EEG70712.1| hypothetical protein BIFPSEUDO_03741 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 362

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 30/181 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P   ++L GP G GK+ LA I +++        S          +     +D  + + ++
Sbjct: 73  PPDHILLAGPPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFID 132

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD---------------- 157
           +I  L     +L +I     +     +M  +     S  + LP                 
Sbjct: 133 EIHRLPRAAEELLYI---AMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSP 189

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L +R      +     ++  LEK+I +  +   I +++  A  +  R   +   A +L+ 
Sbjct: 190 LRARFGFTAHLDFYPHEE--LEKLIERSSSVLGISLEEGAAHQLAMRSRGTPRIANRLLR 247

Query: 218 K 218
           +
Sbjct: 248 R 248


>gi|229815358|ref|ZP_04445693.1| hypothetical protein COLINT_02403 [Collinsella intestinalis DSM
           13280]
 gi|229809138|gb|EEP44905.1| hypothetical protein COLINT_02403 [Collinsella intestinalis DSM
           13280]
          Length = 366

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
            R++ + GP  SGK+ L+     ++++          +  L  T    +  DID +  + 
Sbjct: 74  GRIIEIYGPESSGKTTLSLEIVAEAQAMGGVAAFIDAEHALDPTYAARIGVDIDEVLISQ 133


>gi|169600986|ref|XP_001793915.1| hypothetical protein SNOG_03347 [Phaeosphaeria nodorum SN15]
 gi|160705850|gb|EAT88552.2| hypothetical protein SNOG_03347 [Phaeosphaeria nodorum SN15]
          Length = 393

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIRE 221


>gi|154498198|ref|ZP_02036576.1| hypothetical protein BACCAP_02179 [Bacteroides capillosus ATCC
           29799]
 gi|150272745|gb|EDM99913.1| hypothetical protein BACCAP_02179 [Bacteroides capillosus ATCC
           29799]
          Length = 597

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 19/95 (20%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P+ +  L+GPSGSGKS LA + +                         + L  +DL D +
Sbjct: 376 PNTITALIGPSGSGKSTLATLIAR----------------FDDPQSGSICLGGVDLRDIS 419

Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
              L++  N        +LM A     +  +  PD
Sbjct: 420 SQTLYN--NIAFVLQDPMLMNASIR-RNISLAKPD 451


>gi|146183509|ref|XP_001026351.2| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|146143563|gb|EAS06106.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 605

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R ++L GP G GK+ LA    ++
Sbjct: 273 PWRKILLYGPPGVGKTMLAQAICNE 297


>gi|123445295|ref|XP_001311409.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121893217|gb|EAX98479.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 388

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 63  PSRV-VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P    V+L GP G+GK+ LA   +  + +T        L    I     ++ E
Sbjct: 164 PQPKGVLLYGPPGTGKTLLARAVAHHTDTTFIRVSGSELVQKYIGEGARMVRE 216


>gi|115898584|ref|XP_780624.2| PREDICTED: similar to MGC81266 protein, partial [Strongylocentrotus
           purpuratus]
          Length = 1005

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103
           +V +L GP G GK+ LA+I +  +        A    S+
Sbjct: 388 KVALLCGPPGLGKTTLAHIIARHAGYNVIEMNASDDRSL 426


>gi|169609180|ref|XP_001798009.1| hypothetical protein SNOG_07677 [Phaeosphaeria nodorum SN15]
 gi|111064023|gb|EAT85143.1| hypothetical protein SNOG_07677 [Phaeosphaeria nodorum SN15]
          Length = 550

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 24/194 (12%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRF-----SNIAKSLDSILIDTRKPVLLEDIDLL 119
             ++L G  G+GK+ +A + ++ S +        S   + +  I  +  + + L     +
Sbjct: 168 PSLVLWGRPGTGKTTIARLIANTSGARFVEINSTSTKLEEVRKIFGEAARDLQLTGRKTI 227

Query: 120 DFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
            F D    H  +           +     L+ A T   S+ V    L SR +  T+  + 
Sbjct: 228 VFCDE--LHRFSKTQQDAFLGPVESGIITLIAATTENPSFKVISA-LLSRCRTFTLDDLK 284

Query: 172 LPDDDFLEKVIVKMFADRQIF--IDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRGM 228
            PD   +  +     A++     IDK +  Y  +  +     A   ++ +D    LS+  
Sbjct: 285 EPD--LVRILERAAVAEKCESPLIDKDMLQYFARFSD---GDARTALNLLDLAMNLSKSP 339

Query: 229 GITRSLAAEVLKET 242
            IT+    + L +T
Sbjct: 340 EITKEKILQSLTKT 353


>gi|86157972|ref|YP_464757.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774483|gb|ABC81320.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 427

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 9/62 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++LVGP+GSGK+ LA   +      RF N+  ++      T    + ED++ +  N   L
Sbjct: 124 ILLVGPTGSGKTLLAQSLA------RFLNVPFTIADATSLTEAGYVGEDVENIIQN---L 174

Query: 127 FH 128
            H
Sbjct: 175 LH 176


>gi|162312526|ref|NP_594449.2| DNA replication ATPase [Schizosaccharomyces pombe 972h-]
 gi|74626620|sp|O13984|WRIP1_SCHPO RecName: Full=ATPase WRNIP1 homolog C26H5.02c
 gi|62867681|emb|CAB16188.2| DNA replication ATPase [Schizosaccharomyces pombe]
          Length = 504

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 65  RVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDS---ILIDTRKPVLLEDIDLL 119
             +IL G +G+GK+ LA + +   KSR    S  + ++     I  D++  + L     +
Sbjct: 121 NSMILWGSAGTGKTTLARLIAVTTKSRFIEISATSTTVADCRKIFEDSQNYLTLTGRKTI 180

Query: 120 DFNDTQLFHIINSIHQY 136
            F D    H  N   Q 
Sbjct: 181 IFLDEV--HRFNRAQQD 195


>gi|41053850|ref|NP_957200.1| vacuolar protein sorting-associated protein 4B [Danio rerio]
 gi|32766673|gb|AAH55202.1| Vacuolar protein sorting 4b (yeast) [Danio rerio]
          Length = 437

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F +I+ S
Sbjct: 159 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 195


>gi|29831209|ref|NP_825843.1| cell division protein FtsH [Streptomyces avermitilis MA-4680]
 gi|29608323|dbj|BAC72378.1| putative cell division protein FtsH [Streptomyces avermitilis
           MA-4680]
          Length = 664

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G+GK+ LA   + ++    +S        + +      + +  +    N   +
Sbjct: 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 255


>gi|257076346|ref|ZP_05570707.1| cell division cycle protein 48 [Ferroplasma acidarmanus fer1]
          Length = 744

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
            +L GP G+GK+ LA   +++S +   S
Sbjct: 504 FLLYGPPGTGKTLLAKAVANESNANFIS 531



 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 84/225 (37%), Gaps = 57/225 (25%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + V+L GP G+GK+ +A   +++S +  F+               + L  I     + 
Sbjct: 223 PPKGVLLNGPPGTGKTLIAKAVANESGANFFAINGPEIMSKYYGQSEQKLREIFQKADES 282

Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTAR--------- 145
               + +++ID +                 QL  +++ +      +++ A          
Sbjct: 283 EPSIIFIDEIDSIAPKREDVQGEVERRVVAQLLTLMDGLKDRGHVIVIGATNRLDAVDPA 342

Query: 146 -TFPVSWG----VCLPDLCSRLKAATVVKISLP---DDDFLEKVIVKMFADRQIFIDKKL 197
              P  +     + +PD   R++  T+    +P   DD+   +   ++      F+   L
Sbjct: 343 LRRPGRFDREIVIGVPDKKGRMEILTIHTRGMPLGMDDEKESEFFSRIADITYGFVGADL 402

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
           AA  + R E ++    + + ++D         + + +  EVL++ 
Sbjct: 403 AA--LTR-ESAMNALRRYLPEID---------LDKPIPTEVLEKM 435


>gi|292656086|ref|YP_003535983.1| proteasome-activating nucleotidase B [Haloferax volcanii DS2]
 gi|74487127|sp|Q5UT56|PAN2_HALVD RecName: Full=Proteasome-activating nucleotidase 2; Short=PAN 2;
           AltName: Full=Proteasomal ATPase 2; AltName:
           Full=Proteasome regulatory ATPase 2; AltName:
           Full=Proteasome regulatory particle 2
 gi|54694991|gb|AAV38127.1| proteasome-activating nucleotidase B [Haloferax volcanii DS2]
 gi|291372348|gb|ADE04575.1| proteasome-activating nucleotidase B [Haloferax volcanii DS2]
          Length = 412

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ LA   ++++ ++        L    I     ++ +   L    
Sbjct: 185 PPSGVLLYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAAER 244

Query: 123 D 123
           +
Sbjct: 245 E 245


>gi|50307773|ref|XP_453880.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74690211|sp|Q6CQA9|RUVB1_KLULA RecName: Full=RuvB-like helicase 1
 gi|49643014|emb|CAH00976.1| KLLA0D18502p [Kluyveromyces lactis]
          Length = 457

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 22/122 (18%)

Query: 96  IAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD-SSLLMTART-------- 146
           +AK +D  + +    VL   ID ++  D ++F  +N   + D + +++ A          
Sbjct: 286 VAKYIDQGVAELVPGVLF--IDEVNMLDIEIFTYLNRALESDIAPVVVLASNRGMITVRG 343

Query: 147 -----FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201
                 P       PDL  RL    +V+    + + ++ +I K  A   + ++ +   ++
Sbjct: 344 TDDVVSPHGVP---PDLIDRL---LIVRTLPYNREEIKTIISKRAAVENLQVEDEALEFL 397

Query: 202 VQ 203
             
Sbjct: 398 AT 399


>gi|163942170|ref|YP_001647054.1| Holliday junction DNA helicase B [Bacillus weihenstephanensis
           KBAB4]
 gi|229013637|ref|ZP_04170768.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides DSM 2048]
 gi|229062115|ref|ZP_04199440.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH603]
 gi|229076051|ref|ZP_04209022.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock4-18]
 gi|229098894|ref|ZP_04229830.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-29]
 gi|229105058|ref|ZP_04235710.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-28]
 gi|229117920|ref|ZP_04247282.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock1-3]
 gi|229135244|ref|ZP_04264042.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST196]
 gi|229169163|ref|ZP_04296878.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH621]
 gi|229470532|sp|A9VIP6|RUVB_BACWK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|163864367|gb|ABY45426.1| Holliday junction DNA helicase RuvB [Bacillus weihenstephanensis
           KBAB4]
 gi|228614391|gb|EEK71501.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH621]
 gi|228648222|gb|EEL04259.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           BDRD-ST196]
 gi|228665577|gb|EEL21057.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock1-3]
 gi|228678368|gb|EEL32593.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-28]
 gi|228684567|gb|EEL38509.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-29]
 gi|228707085|gb|EEL59287.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock4-18]
 gi|228717267|gb|EEL68942.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH603]
 gi|228747696|gb|EEL97568.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides DSM 2048]
          Length = 333

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI +++      +    +++           L+  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHR 115

Query: 127 FH 128
            H
Sbjct: 116 LH 117


>gi|116753401|ref|YP_842519.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta
           thermophila PT]
 gi|116664852|gb|ABK13879.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT]
          Length = 739

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + ++L GP G+GK+ +A   ++++ +   S
Sbjct: 497 PPKGILLYGPPGTGKTLIAQAVANETNANFIS 528



 Score = 37.1 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ +A   +++S ++ FS
Sbjct: 225 PPKGVLLYGPPGTGKTLIAKAVANESGASFFS 256


>gi|71657180|ref|XP_817109.1| ATPase domain protein [Trypanosoma cruzi strain CL Brener]
 gi|70882280|gb|EAN95258.1| ATPase domain protein, putative [Trypanosoma cruzi]
          Length = 572

 Score = 38.2 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 30/178 (16%)

Query: 63  PSRVVIL-VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121
           PS    L  GPSGSGK+ + +  + +  +  +          + D  +P   E  D    
Sbjct: 58  PSPFFFLVCGPSGSGKTFVLH--AVRQGAGVYGMSVSHGVPSMDDGMEPETTEWNDSRA- 114

Query: 122 NDTQLFHI-INSIHQYDSSLLMTARTFPVSWGVCLPDLCS-----RLKAATVVKISLPDD 175
              ++F++  N++   DS     +  +P    V L D+ +     RL A+   ++     
Sbjct: 115 ---RIFYVDYNALRSNDSRASSISEKYPAGTVVLLDDIEAVDYLLRLNASLH-RLEDMVS 170

Query: 176 DFLEK---VIVKMFAD-----RQIFI--------DKKLAAYIVQRMERSLVFAEKLVD 217
             L      +V    D     R +            +L +   +R+ RS   AE L+ 
Sbjct: 171 RLLRSPRCALVTSATDVLHVPRWLLAIWTPFTYKTHELTSSAARRLIRSFPDAEDLLA 228


>gi|308162310|gb|EFO64716.1| P60 katanin [Giardia lamblia P15]
          Length = 501

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 20/28 (71%)

Query: 62  WPSRVVILVGPSGSGKSCLANIWSDKSR 89
           WP+  ++L GP+G+GK+ +A+  + ++ 
Sbjct: 245 WPTTGLLLYGPAGTGKTLIASSVATQAG 272


>gi|296114152|ref|ZP_06832807.1| ATPase associated with various cellular activities AAA_5
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295979228|gb|EFG85951.1| ATPase associated with various cellular activities AAA_5
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 332

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 8/47 (17%)

Query: 51  QAVRLI----DSWPSW----PSRVVILVGPSGSGKSCLANIWSDKSR 89
           QAV ++    + W  W    P R V+LVGP G GKS +A ++ + + 
Sbjct: 99  QAVEVLACSDEEWSEWGKVVPMRPVLLVGPPGCGKSTVARLYHEMAG 145


>gi|322420883|ref|YP_004200106.1| Holliday junction DNA helicase RuvB [Geobacter sp. M18]
 gi|320127270|gb|ADW14830.1| Holliday junction DNA helicase RuvB [Geobacter sp. M18]
          Length = 337

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 25/188 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +   +  S     ++           LE  D+L  ++   
Sbjct: 54  VLLYGPPGLGKTTLANIIACEMGVSIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEI-- 111

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF-----LEKV 181
            H ++ + +    +L      P      L  +  +  +A  +K+ LP            +
Sbjct: 112 -HRLSHVVEE---ILY-----PAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGL 162

Query: 182 IVKMFADRQIFID------KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235
           +     DR   I        +  A+I+ R  R    A      ++   L+R    T  +A
Sbjct: 163 LSSPLRDRFGVISRLEFYTHEELAFIITRSSRIFGMAIAPDGALE---LARRSRGTPRIA 219

Query: 236 AEVLKETQ 243
             +L+  +
Sbjct: 220 NRLLRRVR 227


>gi|294877874|ref|XP_002768170.1| 26S proteasome regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239870367|gb|EER00888.1| 26S proteasome regulatory subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 449

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P + V+L GPSG+GK+ LA   +  + +   S          +      +
Sbjct: 220 PIKGVLLYGPSGTGKTLLARAVAGTAHAAFLSTSGSEFIDTYVGRGSARV 269


>gi|218259397|ref|ZP_03475141.1| hypothetical protein PRABACTJOHN_00798 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225126|gb|EEC97776.1| hypothetical protein PRABACTJOHN_00798 [Parabacteroides johnsonii
           DSM 18315]
          Length = 512

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 18  NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77
           N + +    QL F         +++  V  A+E A           S  +IL+GP GSGK
Sbjct: 178 NTREEFYARQLQFEADFSDVRGQEN--VKRALEVAAAG--------SHNLILIGPPGSGK 227

Query: 78  SCLA 81
           S LA
Sbjct: 228 SMLA 231


>gi|255936031|ref|XP_002559042.1| Pc13g06080 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583662|emb|CAP91677.1| Pc13g06080 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 419

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 146 PSGVL-LYGPPGCGKTMLAKALASESGACFIN 176


>gi|260833506|ref|XP_002611698.1| hypothetical protein BRAFLDRAFT_117082 [Branchiostoma floridae]
 gi|229297069|gb|EEN67708.1| hypothetical protein BRAFLDRAFT_117082 [Branchiostoma floridae]
          Length = 859

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 51  QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           +A R +   P  P  V+ L GP G+GK+ +A + + +  +T       +   +L  T   
Sbjct: 366 EAFRSLGVAP--PYGVL-LFGPPGTGKTMVARVLAAEIGATFI---TINGPEVLSKTPSI 419

Query: 111 VLLEDIDLLD 120
           + ++++D L 
Sbjct: 420 IFIDELDALC 429


>gi|198276646|ref|ZP_03209177.1| hypothetical protein BACPLE_02842 [Bacteroides plebeius DSM 17135]
 gi|198270171|gb|EDY94441.1| hypothetical protein BACPLE_02842 [Bacteroides plebeius DSM 17135]
          Length = 349

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 64  SRVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
            R++ + GP  SGK+ LA +  ++  R+   +      +          L  DID L
Sbjct: 77  GRIIEIYGPESSGKTTLAIHAIAEAQRAGGIAAF-IDAEHAFDRFYAAKLGVDIDNL 132


>gi|225459844|ref|XP_002285925.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 706

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           +LVGP G+GK+ LA   + ++    FS  A     + +      + +
Sbjct: 289 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRD 335


>gi|154323758|ref|XP_001561193.1| hypothetical protein BC1G_00278 [Botryotinia fuckeliana B05.10]
 gi|150842507|gb|EDN17700.1| hypothetical protein BC1G_00278 [Botryotinia fuckeliana B05.10]
          Length = 898

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            +L GP G+GK+ LA + +  S S   S     ++S  +   + ++
Sbjct: 650 ALLYGPPGTGKTQLARVLAKTSGSIMLSVSGAEMESKYVGETEKLV 695


>gi|146082368|ref|XP_001464492.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068585|emb|CAM66881.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 214

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108
           +I+ GP GSGK+ LA   +     T  +  + +   + +   
Sbjct: 54  IIITGPPGSGKTTLAAKLAAHYGITHVAATSAAAGDMAMPAG 95


>gi|119467978|ref|XP_001257795.1| proteasome regulatory particle subunit Rpt4, putative [Neosartorya
           fischeri NRRL 181]
 gi|119405947|gb|EAW15898.1| proteasome regulatory particle subunit Rpt4, putative [Neosartorya
           fischeri NRRL 181]
          Length = 393

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIRE 221


>gi|110769975|ref|XP_001122528.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
           [Apis mellifera]
          Length = 361

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  ++  ++      T    + ED++ +
Sbjct: 48  IALIGPTGSGKTYLAQTLA------RILDVPFAIADATTLTEAGYVGEDVENI 94


>gi|192455670|ref|NP_001122223.1| fidgetin-like protein 1 [Danio rerio]
 gi|190339286|gb|AAI62519.1| Wu:fb82h05 [Danio rerio]
 gi|220678852|emb|CAX12972.1| novel protein (zgc:193664) [Danio rerio]
          Length = 661

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 34  RCLGISRDDLLVHSAIEQAVRLIDS---WP----------SWPSRVVILVGPSGSGKSCL 80
               ++ DD+   + +E A   I     WP            P + ++L GP G+GK+ +
Sbjct: 381 HGPPVAWDDI---AGLEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLI 437

Query: 81  ANIWSDKSRSTRFSNIAKSLDS 102
               + +S +T FS  A SL S
Sbjct: 438 GKCIACQSGATFFSISASSLTS 459


>gi|73945441|ref|XP_857366.1| PREDICTED: similar to vacuolar protein sorting factor 4B isoform 8
           [Canis familiaris]
          Length = 468

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99
           P R ++L GP G+GKS LA   + ++ ++ F +I+ S
Sbjct: 190 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 226


>gi|20092335|ref|NP_618410.1| cell division control protein 48 AAA family protein [Methanosarcina
           acetivorans C2A]
 gi|19917582|gb|AAM06890.1| cell division control protein 48 AAA family protein [Methanosarcina
           acetivorans C2A]
          Length = 786

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 16/74 (21%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS----------------TRFSNIAKSLDSILID 106
           P + VIL GP G+GK+ +A   +++S +                     + K  +    D
Sbjct: 231 PPKGVILYGPPGTGKTLIAKAVANESGASFHYIAGPEIVGKFYGESEERLRKIFEEATQD 290

Query: 107 TRKPVLLEDIDLLD 120
               + +++ID + 
Sbjct: 291 APSVIFIDEIDSIA 304



 Score = 37.4 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           ++L GP G+GK+ +A   + +S +   S
Sbjct: 546 ILLYGPPGTGKTLIAQAVAKESNANFIS 573


>gi|126176296|ref|YP_001052445.1| sporulation domain-containing protein [Shewanella baltica OS155]
 gi|125999501|gb|ABN63576.1| Sporulation domain protein [Shewanella baltica OS155]
          Length = 482

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 86/227 (37%), Gaps = 42/227 (18%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDS 102
            + E  ++ +    S+  ++++L G SGSGK+     LA  + + + +     +      
Sbjct: 10  PSQEALIQRMHHVASYSDQLLVLSGVSGSGKTTLVTGLATDFDESNAAFVICPMHADNAE 69

Query: 103 I-----LIDTRKPVLLEDIDLLD----------------FNDTQLF--HII------NSI 133
           I     +     P+  +DI L D                 +D  L    +       N I
Sbjct: 70  IRRKILVQLISSPIFDDDIPLADTLLRLASTQTKPLHIIIDDAHLLPKALWAECIILNQI 129

Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAATVVKISL---PDDDFLEKVIVKMFADR 189
                ++ +T    P      LP L  +L +    + I     P+ + L + +++ ++D+
Sbjct: 130 QCAGKNIAVTLTVPPAFLADLLPQLPEQLRRQILPISIEPLTMPEREALYQTLLR-YSDQ 188

Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236
             F  +++      ++E+     +++V+ +D  AL      T SL  
Sbjct: 189 NPFTPREIVR---SQLEKQTGTPQEVVNLLDK-ALHSAPEKTSSLVK 231


>gi|46116936|ref|XP_384486.1| hypothetical protein FG04310.1 [Gibberella zeae PH-1]
          Length = 1014

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           +L GP G+GK+ LA   + +S +        +++ 
Sbjct: 745 LLYGPPGTGKTLLAKAVAKESGANMLEISGATIND 779


>gi|328953179|ref|YP_004370513.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
 gi|328453503|gb|AEB09332.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM
           11109]
          Length = 624

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+LVGP G+GK+ LA   + ++    FS        + +      + +
Sbjct: 196 VLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGAARVRD 243


>gi|312796041|ref|YP_004028963.1| transposase [Burkholderia rhizoxinica HKI 454]
 gi|312167816|emb|CBW74819.1| Transposase [Burkholderia rhizoxinica HKI 454]
          Length = 257

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 21/106 (19%)

Query: 67  VILVGPSGSGKSCLANIW---SDKSR----------------STRFSNIAKSLDSILIDT 107
            +L+GPSG GK+ LA      + ++                 + R      ++    +  
Sbjct: 104 AVLLGPSGVGKTHLAIAIGYAATQAGIKTKFITAADLMLQLEAARRQERYDAVLRHNVLG 163

Query: 108 RKPVLLEDIDLLDFNDTQLFHIINSI--HQYDSSLLMTARTFPVSW 151
            + +++++I  L  ++ Q  H    +       S+++T+      W
Sbjct: 164 PRLLIVDEIGYLPLSEDQASHFFQIVAKRYERGSMILTSNLPFTQW 209


>gi|307328289|ref|ZP_07607467.1| ATP-binding protein [Streptomyces violaceusniger Tu 4113]
 gi|306886123|gb|EFN17131.1| ATP-binding protein [Streptomyces violaceusniger Tu 4113]
          Length = 491

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 60/199 (30%), Gaps = 42/199 (21%)

Query: 7   DYSFFVPDKQKNDQPKNKEEQLF--FSFPRCLGISRD-DLL---------VHSAIEQAVR 54
            +   +PD ++    +    QL      P      +  DLL             +  A  
Sbjct: 123 GWDIAIPDPREVCWRRT---QLTGELPLPTKDTDGKGIDLLLRLCNFANAETECLAIAWL 179

Query: 55  LIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110
           +    PS P     L GP G+GKS     L  I    S   R +   +      +     
Sbjct: 180 IGCLGPSVPVPAPFLTGPQGAGKSTGGRMLVRIIEGLSGDLRRAPKDEENLIAAVAAGWV 239

Query: 111 VLLEDIDLLDFN---------------DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVC 154
             L+++  +  +                  LF   +         LL+T     +  GV 
Sbjct: 240 TALDNLSHMTPDLSDAMCCIVTGAENVKRALFTDGDVFRARYRRPLLLTG----IDVGVI 295

Query: 155 LPDLCSRLKAATVVKISLP 173
            PDL  RL     +++  P
Sbjct: 296 RPDLAERL---LPLRLERP 311


>gi|306823495|ref|ZP_07456870.1| ABC superfamily ATP binding cassette transporter, ABC/membrane
           protein [Bifidobacterium dentium ATCC 27679]
 gi|309802652|ref|ZP_07696756.1| ABC transporter, ATP-binding protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553202|gb|EFM41114.1| ABC superfamily ATP binding cassette transporter, ABC/membrane
           protein [Bifidobacterium dentium ATCC 27679]
 gi|308220716|gb|EFO77024.1| ABC transporter, ATP-binding protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 581

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 58  SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117
           SW + P  ++ +VGPSGSGK+ +A + +   R          +  + +  ++   +    
Sbjct: 357 SWTARPGSMLAVVGPSGSGKTTMAKLIA---RFYDVDAGTVRVGGLDVRDQRASDVVAQL 413

Query: 118 LLDFNDTQLFH 128
            + F D  LFH
Sbjct: 414 SMVFQDVYLFH 424


>gi|303325757|ref|ZP_07356200.1| Mg chelatase-like protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863673|gb|EFL86604.1| Mg chelatase-like protein [Desulfovibrio sp. 3_1_syn3]
          Length = 511

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 20  QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79
           QP     Q  F  P        D       + A R ++   +     ++L+GP GSGK+ 
Sbjct: 178 QPGAPPAQPSFPMP--------DFAEVKGQQAAKRALEVAAAG-GHNLLLIGPPGSGKTM 228

Query: 80  LAN 82
           LA 
Sbjct: 229 LAQ 231


>gi|302688051|ref|XP_003033705.1| hypothetical protein SCHCODRAFT_81603 [Schizophyllum commune H4-8]
 gi|300107400|gb|EFI98802.1| hypothetical protein SCHCODRAFT_81603 [Schizophyllum commune H4-8]
          Length = 326

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           V+L GP G GK+ LA   + +SR+T  +  A +L S
Sbjct: 94  VLLFGPPGCGKTMLAKALAKESRATFINIAASALAS 129


>gi|302143744|emb|CBI22605.3| unnamed protein product [Vitis vinifera]
          Length = 782

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ +   +
Sbjct: 502 PCRGILLFGPPGNGKTMLAKAIANEAGARFIN 533


>gi|269794976|ref|YP_003314431.1| ATPase [Sanguibacter keddieii DSM 10542]
 gi|269097161|gb|ACZ21597.1| predicted ATPase [Sanguibacter keddieii DSM 10542]
          Length = 372

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 13/102 (12%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKPV 111
           +  V L G  G GK+ L    +                +     +  +     + T+  V
Sbjct: 102 APAVYLDGGFGVGKTHLLTSLAHAVGTGASSYGTFVEYTNLVGALGFAKTVEALATKTLV 161

Query: 112 LLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152
            +++ +L D  DT L   ++  +     +L  T+ T P S G
Sbjct: 162 CIDEFELDDPGDTVLMSRLLRELADRGVALAATSNTLPDSLG 203


>gi|253798355|ref|YP_003031356.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis KZN 1435]
 gi|289553646|ref|ZP_06442856.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis KZN 605]
 gi|297635174|ref|ZP_06952954.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis KZN 4207]
 gi|297732166|ref|ZP_06961284.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis KZN R506]
 gi|313659500|ref|ZP_07816380.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis KZN V2475]
 gi|253319858|gb|ACT24461.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis KZN 1435]
 gi|289438278|gb|EFD20771.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis KZN 605]
 gi|328458125|gb|AEB03548.1| glutamine-transport ATP-binding protein ABC transporter glnQ
           [Mycobacterium tuberculosis KZN 4207]
          Length = 330

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 30/106 (28%)

Query: 42  DLLV-HSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98
           DL+V +S+   AVR ID       P  +VIL+GPSG GK+ L +                
Sbjct: 8   DLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSC--------------- 52

Query: 99  SLDSILIDTRKPVLLEDIDLLDFNDTQL-----------FHIINSI 133
            L  IL      +  +D+D+       L           F   N +
Sbjct: 53  -LGGILRPKSGSIKFDDVDITTLEGAALAKYRRDKVGIVFQAFNLV 97


>gi|269836987|ref|YP_003319215.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943100|sp|D1C2C6|FTSH2_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|269786250|gb|ACZ38393.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 652

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+L GP G+GK+ L    + ++R++ FS        + +      + E
Sbjct: 194 RGVLLTGPPGTGKTLLTRALAGEARASFFSVSGSEFVELYVGVGASRVRE 243


>gi|229019644|ref|ZP_04176454.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1273]
 gi|229025882|ref|ZP_04182278.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1272]
 gi|228735434|gb|EEL86033.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1272]
 gi|228741647|gb|EEL91837.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           AH1273]
          Length = 333

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI +++      +    +++           L+  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHR 115

Query: 127 FH 128
            H
Sbjct: 116 LH 117


>gi|303276839|ref|XP_003057713.1| ATP-binding cassette superfamily [Micromonas pusilla CCMP1545]
 gi|226460370|gb|EEH57664.1| ATP-binding cassette superfamily [Micromonas pusilla CCMP1545]
          Length = 664

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123
             ++ L+GPSGSGK+ L N  + +      ++++ ++ +   +   P  +  I      +
Sbjct: 82  GSLLALMGPSGSGKTSLLNALAFRVPKGPGASVSGTIYANGEEVATPTKMSRISAYVEQE 141

Query: 124 TQLFHI 129
             LF +
Sbjct: 142 DALFAL 147


>gi|220904598|ref|YP_002479910.1| ABC transporter-like protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868897|gb|ACL49232.1| ABC transporter related [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 571

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 63  PSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKS-LDSILIDTRKPVLLEDI 116
           P  +V LVGPSGSGKS L    A +W  K    R  N+    +D   +     ++L+D+
Sbjct: 357 PGSMVALVGPSGSGKSTLAALIARLWDVKEGVVRIGNVDVRDIDEPTLHRTVSMVLQDV 415


>gi|295836295|ref|ZP_06823228.1| cell division protein FtsH [Streptomyces sp. SPB74]
 gi|197697339|gb|EDY44272.1| cell division protein FtsH [Streptomyces sp. SPB74]
          Length = 651

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+L GP G+GK+ LA   + ++    FS  A     +++      + E
Sbjct: 243 RGVLLTGPPGTGKTLLARAVAGEANVPFFSASASEFIEMIVGVGASRVRE 292


>gi|195348110|ref|XP_002040594.1| GM18837 [Drosophila sechellia]
 gi|194122022|gb|EDW44065.1| GM18837 [Drosophila sechellia]
          Length = 478

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92
           P R ++L GP GSGK+ LA     +++   
Sbjct: 237 PWRSLLLHGPPGSGKTLLAKALYSETQGQV 266


>gi|183598337|ref|ZP_02959830.1| hypothetical protein PROSTU_01729 [Providencia stuartii ATCC 25827]
 gi|188020513|gb|EDU58553.1| hypothetical protein PROSTU_01729 [Providencia stuartii ATCC 25827]
          Length = 447

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           +IL GP G+GK+ LA I    +++   R S +   +  I     K       +      T
Sbjct: 53  MILWGPPGTGKTTLAEIIGHYAQADIERISAVTSGIKEIREAIEKA----RQNRDAGRRT 108

Query: 125 QLF----HIINSIHQY 136
            LF    H  N   Q 
Sbjct: 109 ILFVDEVHRFNKSQQD 124


>gi|209550797|ref|YP_002282714.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|226698781|sp|B5ZP80|RUVB_RHILW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|209536553|gb|ACI56488.1| Holliday junction DNA helicase RuvB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 346

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 92/264 (34%), Gaps = 43/264 (16%)

Query: 4   MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDD---LLVHSAIEQAVRLIDSWP 60
           M E      P+K+  D       Q           +R +    +  +        +D   
Sbjct: 1   MSEPARLISPEKRGEDLDITLRPQ-SLDEFTGQAEARANLKVFIEAAKNRG--EALDH-- 55

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
                 V+ VGP G GK+ LA I + +      S     +            LE+ D+L 
Sbjct: 56  ------VLFVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLF 109

Query: 121 FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAA 165
            ++    H +N   +        D  L +     P +  V + DL         +RL   
Sbjct: 110 IDEI---HRLNPAVEEILYPAMEDFQLDLIIGEGPAARSVKI-DLSKFTLVAATTRLGLL 165

Query: 166 TV---------VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
           T          V++S    + LE ++ +      + I ++ A  I +R   +   A +L+
Sbjct: 166 TTPLRDRFGIPVRLSFYTVEELELIVRRGARLMNLPITEEGAREIARRARGTPRIAGRLL 225

Query: 217 DKM-DNLALSRGMGITRSLAAEVL 239
            ++ D   ++R   +TR +A E L
Sbjct: 226 RRVRDFAEVARAEAVTREIADEAL 249


>gi|164430964|gb|ABY55754.1| spastin [Drosophila silvestris]
          Length = 367

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           P++ ++L GP G+GK+ LA   + +  +T  +  A SL S  +   + ++
Sbjct: 124 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLV 173


>gi|170591993|ref|XP_001900754.1| 26S proteasome regulatory chain 4 [Brugia malayi]
 gi|158591906|gb|EDP30509.1| 26S proteasome regulatory chain 4, putative [Brugia malayi]
          Length = 727

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + VIL G  G+GK+ LA   +  + +T        L
Sbjct: 501 PPKGVILYGEPGTGKTLLAKAVAHSTSATFIRVTGADL 538


>gi|156056681|ref|XP_001594264.1| hypothetical protein SS1G_04071 [Sclerotinia sclerotiorum 1980]
 gi|154701857|gb|EDO01596.1| hypothetical protein SS1G_04071 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 393

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 68/198 (34%), Gaps = 52/198 (26%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108
           P + V+L GP G+GK+ LA   +    +     ++ ++    I                 
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 229

Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151
           +P ++  ++ID +                  L  ++N +        + ++ A   P + 
Sbjct: 230 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 289

Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208
              L      L+A  +   ++I LP++    +++    +   + ID ++           
Sbjct: 290 DPAL------LRAGRLDRKIEIPLPNEVGRLEIMKIHASS--VVIDGEV----------D 331

Query: 209 LVFAEKLVDKMDNLALSR 226
                K+ D ++   L  
Sbjct: 332 FESVVKMSDGLNGADLRN 349


>gi|154340471|ref|XP_001566192.1| ATPase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063511|emb|CAM39692.1| putative ATPase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 770

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 53 VRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS 90
          V L+  WP  P      V+L GP+ +GKS L    +D + +
Sbjct: 29 VSLLRWWPYAPHEQIPSVLLCGPTSNGKSHLVRRAADAANA 69


>gi|112253387|gb|ABI14281.1| ATP-dependent 26S proteasome regulatory subunit [Pfiesteria
           piscicida]
          Length = 402

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           V+L GP G+GK+ LA   +  ++          L    I     ++ E
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTQCCFIRVSGGELVQKYIGEGSRMVRE 229


>gi|92918908|gb|ABE96816.1| rep [Porcine circovirus 1]
          Length = 312

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118
             W + V ++VGP G GKS  A  +++ S +    +  K  D       + V+L+D    
Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217

Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151
           L ++D  +L        +           S+L+T+   P  W
Sbjct: 218 LPWDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQGW 259


>gi|119195927|ref|XP_001248567.1| hypothetical protein CIMG_02338 [Coccidioides immitis RS]
          Length = 241

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P +  +L GP G+GK+  A   ++++ +T    I   L    +     ++ E
Sbjct: 16  PPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 67


>gi|29893577|gb|AAP06831.1| unknown protein [Oryza sativa Japonica Group]
          Length = 973

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116
            +V++L GP G GK+ LA++ + K        I  S D     + +P +L+ I
Sbjct: 355 QKVLLLCGPPGLGKTTLAHV-AAKHCGYHVVEINAS-DDRSASSIEPKILDVI 405


>gi|13605839|gb|AAK32905.1|AF367318_1 At2g01320/F10A8.20 [Arabidopsis thaliana]
 gi|22137204|gb|AAM91447.1| At2g01320/F10A8.20 [Arabidopsis thaliana]
          Length = 725

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK 87
           P R++ ++GPSGSGK+ L N+ + +
Sbjct: 100 PGRLLAIMGPSGSGKTTLLNVLAGQ 124


>gi|48477528|ref|YP_023234.1| cell division cycle protein 48 [Picrophilus torridus DSM 9790]
 gi|48430176|gb|AAT43041.1| cell division cycle protein 48 [Picrophilus torridus DSM 9790]
          Length = 744

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
            +L GP G+GK+ LA   +++S +   S
Sbjct: 503 FLLYGPPGTGKTLLAKAVANESNANFIS 530



 Score = 37.4 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 57/229 (24%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110
           P + V+L GP G+GK+ +A   +++S +  ++               + L  I     + 
Sbjct: 222 PPKGVLLSGPPGTGKTLIAKAVANESGANFYAINGPEIMSKYYGQSEQKLREIFQKAEES 281

Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTAR--------- 145
               + +++ID +                 QL  +++ + +    +++ A          
Sbjct: 282 EPSIIFIDEIDSIAPKREDVQGEVERRVVAQLLTLMDGLKERGHVIVIGATNRIDAVDPA 341

Query: 146 -TFPVSWG----VCLPDLCSR--LKAATVVKISL-PDDDFLEKVIVKMFADRQIFIDKKL 197
              P  +     + +PD   R  + A     + L   DD  E  + K+      F+   L
Sbjct: 342 LRRPGRFDREITIGVPDKKGRKEILAIHTRGMPLGMTDDEKENFLEKIADLTYGFVGADL 401

Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246
           AA  + R E ++    + + ++D         + + +  EVL++    +
Sbjct: 402 AA--LTR-ESAMNALRRYLPEID---------LDKPIPTEVLEKMVVTE 438


>gi|70991445|ref|XP_750571.1| proteasome regulatory particle subunit Rpt4 [Aspergillus fumigatus
           Af293]
 gi|66848204|gb|EAL88533.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
           fumigatus Af293]
 gi|159124127|gb|EDP49245.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
           fumigatus A1163]
          Length = 393

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 170 PPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIRE 221


>gi|315653481|ref|ZP_07906402.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus iners
           ATCC 55195]
 gi|315489172|gb|EFU78813.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus iners
           ATCC 55195]
          Length = 433

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 119 IALIGPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 165


>gi|312871447|ref|ZP_07731542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 3008A-a]
 gi|312872315|ref|ZP_07732385.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2062A-h1]
 gi|325912860|ref|ZP_08175238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 60-B]
 gi|311092138|gb|EFQ50512.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311093100|gb|EFQ51449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 3008A-a]
 gi|325477853|gb|EGC80987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 60-B]
          Length = 433

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 119 IALIGPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 165


>gi|312873980|ref|ZP_07734016.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2052A-d]
 gi|311090529|gb|EFQ48937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2052A-d]
          Length = 429

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 115 IALIGPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 161


>gi|309807958|ref|ZP_07701886.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168809|gb|EFO70899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 01V1-a]
          Length = 433

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 119 IALIGPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 165


>gi|309807089|ref|ZP_07701068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 03V1-b]
 gi|309809314|ref|ZP_07703183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325912021|ref|ZP_08174423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 143-D]
 gi|308166519|gb|EFO68719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 03V1-b]
 gi|308170427|gb|EFO72451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325476206|gb|EGC79370.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners UPII 143-D]
          Length = 433

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 119 IALIGPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 165


>gi|309805711|ref|ZP_07699751.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 09V1-c]
 gi|329921321|ref|ZP_08277759.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 1401G]
 gi|308164964|gb|EFO67207.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 09V1-c]
 gi|328934613|gb|EGG31117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners SPIN 1401G]
          Length = 429

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 115 IALIGPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 161


>gi|309804151|ref|ZP_07698229.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 11V1-d]
 gi|312875511|ref|ZP_07735514.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2053A-b]
 gi|308163734|gb|EFO66003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LactinV 11V1-d]
 gi|311089022|gb|EFQ47463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus
           iners LEAF 2053A-b]
          Length = 429

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 115 IALIGPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 161


>gi|307325436|ref|ZP_07604638.1| AAA ATPase [Streptomyces violaceusniger Tu 4113]
 gi|306888905|gb|EFN19889.1| AAA ATPase [Streptomyces violaceusniger Tu 4113]
          Length = 780

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 38/157 (24%)

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128
           L GP G GKS L    +          +    D +L        +ED+            
Sbjct: 104 LWGPPGVGKSTLLRHAAR--------CLEPGPDGVLFFNAAHREVEDLAQE--------- 146

Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188
           I  + ++            P       P+L  RL A   V +   DD  L    +++ AD
Sbjct: 147 IFEACYEAPGY-------APTG-----PELR-RLMAGVRVTVYA-DDVDLTPEQLRLLAD 192

Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDK--MDNLA 223
                    A +++   ERSL+     ++   +D  A
Sbjct: 193 ----AAPD-ATFVLANRERSLLGEGGHLELRGLDRAA 224


>gi|307294789|ref|ZP_07574631.1| AAA family ATPase, CDC48 subfamily [Sphingobium chlorophenolicum
           L-1]
 gi|306879263|gb|EFN10481.1| AAA family ATPase, CDC48 subfamily [Sphingobium chlorophenolicum
           L-1]
          Length = 751

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P++  +L GP G+GK+ LA   + ++++   +  +  L
Sbjct: 499 PAKGFLLYGPPGTGKTLLAKAVAREAQANFIATKSSDL 536


>gi|302191374|ref|ZP_07267628.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus
           iners AB-1]
          Length = 429

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 115 IALIGPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 161


>gi|302795442|ref|XP_002979484.1| hypothetical protein SELMODRAFT_111106 [Selaginella moellendorffii]
 gi|300152732|gb|EFJ19373.1| hypothetical protein SELMODRAFT_111106 [Selaginella moellendorffii]
          Length = 788

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 28/121 (23%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRS----------------TRFSNIAKSLDSILID 106
           P R ++L GP G+GK+ +A   ++++ +                   SN+ K+      +
Sbjct: 232 PPRGILLFGPPGTGKTMIARAVANETGAFFTVINGPEIMSKLNGESESNLRKAFAEAERN 291

Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
               + ++++D +                 QL  +++ +    + ++M A   P S    
Sbjct: 292 APSIIFIDEVDSIAPKREQAHGEVERRIVSQLLTLMDGLKTRSNVVVMAATNRPNSIDPA 351

Query: 155 L 155
           L
Sbjct: 352 L 352


>gi|297623567|ref|YP_003705001.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
 gi|297164747|gb|ADI14458.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM
           17093]
          Length = 634

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P  V++ VGP GSGK+ LA   + +++   FS        + +      + +
Sbjct: 186 PHGVLM-VGPPGSGKTHLAKAVAGEAKVPFFSISGSDFVEMFVGVGAARVRD 236


>gi|300087843|ref|YP_003758365.1| Holliday junction DNA helicase RuvB [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527576|gb|ADJ26044.1| Holliday junction DNA helicase RuvB [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 346

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 41/185 (22%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA+I +             +++           L+  D+L  ++   
Sbjct: 61  VLLYGPPGLGKTTLAHIIARDMGVNIRITAGPAVERPGDLAAILTSLQSNDVLFIDEI-- 118

Query: 127 FHIINSIHQ-------YDSSLLMTARTFP--VSWGVCLPD------------LCS--RLK 163
            H +    +        D +L +     P   +  + LP             L S  R +
Sbjct: 119 -HRLGRTVEEILYPAMEDFALDIVIGKGPGAKNLRIKLPHFTLIGATTRYAMLSSPLRDR 177

Query: 164 AATVVKISLPDDDFLEKVIVKMFAD----------RQIFI----DKKLAAYIVQRMERSL 209
             +V ++   +D  +E +I +              R+I        ++A  +++R+ R  
Sbjct: 178 FGSVYRLEYYNDSEIESIIRRSARILDVKADDAGLREIACRARGTPRVANRLLKRV-RDY 236

Query: 210 VFAEK 214
              ++
Sbjct: 237 AQVKE 241


>gi|291391275|ref|XP_002712149.1| PREDICTED: proteasome 26S ATPase subunit 2 [Oryctolagus cuniculus]
          Length = 521

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 296 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 355

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 356 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 415

Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197
                 P          LPDL  R     + KI                  R + +++ +
Sbjct: 416 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 456

Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230
              ++ R    S       +  +    A+     I
Sbjct: 457 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 491


>gi|289614987|emb|CBI58235.1| unnamed protein product [Sordaria macrospora]
          Length = 382

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P + ++L GP G+GKS LA   + +++ST FS  +  L
Sbjct: 171 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDL 208


>gi|259500684|ref|ZP_05743586.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
 gi|259168068|gb|EEW52563.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
          Length = 433

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           + L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 119 IALIGPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 165


>gi|302901636|ref|XP_003048479.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729412|gb|EEU42766.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1018

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           +L GP G+GK+ LA   + +S +        +++ 
Sbjct: 748 LLYGPPGTGKTLLAKAVAKESGANMLEISGATIND 782


>gi|312110087|ref|YP_003988403.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y4.1MC1]
 gi|311215188|gb|ADP73792.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y4.1MC1]
          Length = 334

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 25/200 (12%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++      +    +++           LE  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLAGIIANEMGVHLRTTSGPAIERPGDLAAILTSLEPGDVLFIDEIHR 115

Query: 127 FH------IINSIHQYDSSLLMTARTFPVSWGVCLP----------------DLCSRLKA 164
            H      +  ++  Y   +++       S  + LP                 L  R   
Sbjct: 116 LHRSVEEVLYPAMEDYCLDIVIGKGQTARSIRIDLPPFTLVGATTRAGALSAPLRDRFGV 175

Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224
            + ++   P  + L +++++      + I  + A  I +R   +   A +L+ ++ + A 
Sbjct: 176 ISRLEYYQP--EHLTQIVMRTAEILHVDIKAEAALEIARRSRGTPRIANRLLRRVRDFAQ 233

Query: 225 SRG-MGITRSLAAEVLKETQ 243
            RG   IT SLA E L+  Q
Sbjct: 234 VRGDGTITFSLAKEALELLQ 253


>gi|229086982|ref|ZP_04219139.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-44]
 gi|228696358|gb|EEL49186.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus cereus
           Rock3-44]
          Length = 333

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI +++      +    +++           L+  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHR 115

Query: 127 FH 128
            H
Sbjct: 116 LH 117


>gi|154249524|ref|YP_001410349.1| ATP-dependent protease ATP-binding subunit ClpX [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153460|gb|ABS60692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Fervidobacterium nodosum Rt17-B1]
          Length = 410

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           +IL+GP+GSGK+ +A I +         ++  ++      T    + ED++ +
Sbjct: 110 IILIGPTGSGKTLMARILAK------ILDVPFAIADATPLTEAGYVGEDVENV 156


>gi|239939577|ref|ZP_04691514.1| hypothetical protein SrosN15_01150 [Streptomyces roseosporus NRRL
           15998]
 gi|239986063|ref|ZP_04706727.1| hypothetical protein SrosN1_02017 [Streptomyces roseosporus NRRL
           11379]
 gi|291443000|ref|ZP_06582390.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|60650952|gb|AAX31577.1| hypothetical protein [Streptomyces roseosporus NRRL 11379]
 gi|291345947|gb|EFE72851.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 1103

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 60/203 (29%), Gaps = 43/203 (21%)

Query: 64  SRVVILVGPSGSGKS-------------------CLANIWSDKSRSTRFSNIAKSLDSIL 104
           SR +I  GP G+GK+                    L  +      +      A       
Sbjct: 596 SRHLIFAGPPGTGKTTVARLYGAILAELGSLRSGHLVEVSRADLVAQVVGGTAIKTSETF 655

Query: 105 IDTRKPVL-LEDIDLLDFN---------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
                 VL +++   L  +            +  ++  +  +   +++ A  +       
Sbjct: 656 QRALGGVLFIDEAYTLTADSGNGGADFGREAVDTLLKLMEDHRDDVVVVAAGYSREMESF 715

Query: 155 L---PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERS 208
           L   P L SR       +    DD  L  ++  M    Q  + +  A  +      M+R 
Sbjct: 716 LSSNPGLASRFSRTVEFENYSVDD--LVAIMESMCTQHQYELGEGTAQALAAHFGAMDRD 773

Query: 209 L-----VFAEKLVDKM-DNLALS 225
                   A  + ++M D  A+ 
Sbjct: 774 AGFGNGRAARGVFEEMVDRQAIR 796


>gi|83747762|ref|ZP_00944796.1| Cell division protein ftsH [Ralstonia solanacearum UW551]
 gi|207723996|ref|YP_002254394.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum MolK2]
 gi|207742906|ref|YP_002259298.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum IPO1609]
 gi|300703814|ref|YP_003745416.1| cell division protein, ATP-dependent zinc-metallo protease; aaa
           ATPase and peptidase m41 families [Ralstonia
           solanacearum CFBP2957]
 gi|83725534|gb|EAP72678.1| Cell division protein ftsH [Ralstonia solanacearum UW551]
 gi|206589204|emb|CAQ36166.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum MolK2]
 gi|206594301|emb|CAQ61228.1| atp-dependent zinc metallopeptidase (cell division protein ftsh)
           [Ralstonia solanacearum IPO1609]
 gi|299071477|emb|CBJ42799.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA
           ATPase and peptidase M41 families [Ralstonia
           solanacearum CFBP2957]
          Length = 628

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+LVGP G+GK+ LA   + +++   FS        + +      + +
Sbjct: 188 RGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRD 237


>gi|332162725|ref|YP_004299302.1| IstB protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666955|gb|ADZ43599.1| IstB protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
          Length = 224

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 21/107 (19%)

Query: 65  RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK----------- 109
           R +I VG  G+GK+ LA       +      RF N+   ++ + +D              
Sbjct: 82  RNIIFVGGPGTGKTHLATALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 141

Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151
              ++L+++  L F+      LFH+I+ +H++ +S+++T       W
Sbjct: 142 LDLIVLDELGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 187


>gi|325115186|emb|CBZ50742.1| putative ATP-dependent protease ATP-binding subunit [Neospora
           caninum Liverpool]
          Length = 670

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 16/86 (18%)

Query: 33  PRCLGISRDDLLVH---SAIEQAVRLIDSWPS------------WPSRVVILVGPSGSGK 77
           P  +  + D  +V    +    A+ L D W               P+  ++L+GPSG GK
Sbjct: 164 PDEIVAALDKYIVGQDAAKKSLAIALRDRWRRQQVKDEKLRQEIAPNN-LLLIGPSGCGK 222

Query: 78  SCLANIWSDKSRSTRFSNIAKSLDSI 103
           + LA   +  + +      A     +
Sbjct: 223 TELAKRLAAFAGAPFVKVAATRFTEV 248


>gi|320591014|gb|EFX03453.1| ATPase family aaa domain containing protein [Grosmannia clavigera
           kw1407]
          Length = 460

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S ++  +
Sbjct: 140 PSGVL-LYGPPGCGKTMLAKALAHESGASFIN 170


>gi|331219649|ref|XP_003322501.1| proteasome-activating nucleotidase [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309301491|gb|EFP78082.1| proteasome-activating nucleotidase [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 439

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   + ++ +T    +   L    +     ++ E
Sbjct: 217 PPKGVILYGQPGTGKTLLAKAVAHQTSATFLRVVGSELIQKYLGDGPKLVRE 268


>gi|302496375|ref|XP_003010189.1| hypothetical protein ARB_03541 [Arthroderma benhamiae CBS 112371]
 gi|291173730|gb|EFE29549.1| hypothetical protein ARB_03541 [Arthroderma benhamiae CBS 112371]
          Length = 426

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 157 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 187


>gi|296818593|ref|XP_002849633.1| ATPase family AAA domain-containing protein 1-B [Arthroderma otae
           CBS 113480]
 gi|238840086|gb|EEQ29748.1| ATPase family AAA domain-containing protein 1-B [Arthroderma otae
           CBS 113480]
          Length = 417

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S +   +
Sbjct: 147 PSGVL-LYGPPGCGKTMLAKALAHESGACFIN 177


>gi|228993159|ref|ZP_04153081.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           pseudomycoides DSM 12442]
 gi|228999209|ref|ZP_04158790.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock3-17]
 gi|229006756|ref|ZP_04164390.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock1-4]
 gi|228754617|gb|EEM04028.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock1-4]
 gi|228760554|gb|EEM09519.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           mycoides Rock3-17]
 gi|228766618|gb|EEM15259.1| Holliday junction ATP-dependent DNA helicase ruvB [Bacillus
           pseudomycoides DSM 12442]
          Length = 333

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI +++      +    +++           L+  D+L  ++   
Sbjct: 56  VLLYGPPGLGKTTLANIIANEMGVNIRTTSGPAIERPGDLAAVLTALQPGDVLFIDEIHR 115

Query: 127 FH 128
            H
Sbjct: 116 LH 117


>gi|223945709|gb|ACN26938.1| unknown [Zea mays]
          Length = 334

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++ + +T    +   L    +     ++ E
Sbjct: 112 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRE 163


>gi|242006185|ref|XP_002423934.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212507204|gb|EEB11196.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 768

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
             ++L+GP+G GK+ L  I ++++        A SL
Sbjct: 228 NKLLLIGPNGCGKTTLVKIVANETGCILLEISANSL 263


>gi|168002980|ref|XP_001754191.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694745|gb|EDQ81092.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 446

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++ + +T    +   L    +     ++ E
Sbjct: 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRE 275


>gi|168015395|ref|XP_001760236.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688616|gb|EDQ74992.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 885

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSD----------KSRSTRFSNIAKSLDSILIDTRKPVL 112
           PS  ++++GP+G+GKS L    +               TR   +A     +L   R  ++
Sbjct: 266 PSAQLLVLGPAGTGKSHLLAAAASDFTEEFSRTWSPGLTRKRVVAVLDCGLLQPDRALLV 325

Query: 113 LEDIDLLDFNDTQL 126
           L+D   + F D  +
Sbjct: 326 LQDALFVAFADDTV 339


>gi|163747281|ref|ZP_02154635.1| IstB-like ATP-binding protein [Oceanibulbus indolifex HEL-45]
 gi|163747314|ref|ZP_02154668.1| IstB-like ATP-binding protein [Oceanibulbus indolifex HEL-45]
 gi|161379391|gb|EDQ03806.1| IstB-like ATP-binding protein [Oceanibulbus indolifex HEL-45]
 gi|161379424|gb|EDQ03839.1| IstB-like ATP-binding protein [Oceanibulbus indolifex HEL-45]
          Length = 263

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 34/148 (22%)

Query: 32  FPRCLGISRDDLLVHSAIEQAV------RLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
           FP    ++  D L     E  V        +D+  +     V+L+G  G+GKS +A    
Sbjct: 69  FPSYKDLAGFDFLSSDINEATVRQLHRGAFLDNAEN-----VVLIGGPGTGKSHVATAIG 123

Query: 86  DKS--------RSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND----------- 123
            ++        R      +  +L+      +   L E    IDL+  ++           
Sbjct: 124 VQAIEHHKRKVRFYSTVELVNALEQEKALGKAGKLAEMMTKIDLVILDELGYLPFSASGG 183

Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSW 151
             LFH+++ +++  +S+++T       W
Sbjct: 184 ALLFHLLSKLYER-TSVIITTNLSFSEW 210


>gi|159464433|ref|XP_001690446.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii]
 gi|158279946|gb|EDP05705.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii]
          Length = 443

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++ + +T    +   L    +     ++ E
Sbjct: 221 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRE 272


>gi|29335722|emb|CAD83143.1| putative helper protein [Lactobacillus collinoides]
          Length = 245

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 31/144 (21%)

Query: 29  FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA---NIWS 85
            F F     I+R ++L      Q +  ++   +     +I +G  G GK+ LA    I +
Sbjct: 75  TFDFSFQPSINRQEVLE----FQNLAFMEKSEN-----LIFIGNPGVGKTHLAISIGIEA 125

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVLLE-------DIDLLDFNDTQ-----------LF 127
            K            L   L    +  LL+         DLL  ++             LF
Sbjct: 126 CKQGCRVLFINCHELLIRLRAAYEKGLLDRSLSRYSRYDLLIIDEIGYLPIGHQEANLLF 185

Query: 128 HIINSIHQYDSSLLMTARTFPVSW 151
            ++N       S ++T+ +   +W
Sbjct: 186 QLVN-ARYEKHSTIITSNSDLSAW 208


>gi|11045086|emb|CAC14432.1| 26S proteasome subunit 4-like protein [Brassica napus]
          Length = 443

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++ + +T    +   L    +     ++ E
Sbjct: 221 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRE 272


>gi|73541858|ref|YP_296378.1| peptidase M41, FtsH [Ralstonia eutropha JMP134]
 gi|72119271|gb|AAZ61534.1| Peptidase M41, FtsH [Ralstonia eutropha JMP134]
          Length = 627

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           R V+LVGP G+GK+ LA   + +++   FS        + +      + +
Sbjct: 188 RGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRD 237


>gi|51893836|ref|YP_076527.1| IS21 family transposase [Symbiobacterium thermophilum IAM 14863]
 gi|51857525|dbj|BAD41683.1| IS21 family transposase [Symbiobacterium thermophilum IAM 14863]
          Length = 257

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 24/144 (16%)

Query: 32  FPRCLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLAN----IWS 85
           FP    +   D  V  +  +  +  +        R  ++LVG SG+GK+ LA        
Sbjct: 66  FPVPKTLESFDFTVMPSVNKAKILALSKSEYIRDRENILLVGNSGTGKTHLATALGIAAC 125

Query: 86  DKSRSTRFSNIAKSLDSILIDTRKPVL--LE----DIDLLDFND-----------TQLFH 128
            +    RF  + + +  +     +  L  LE      DL+  ++             LFH
Sbjct: 126 RQGYRVRFWRVGQFVAELQEAQNEHRLSRLEKQWLRFDLVVLDELGYVSLSRPASELLFH 185

Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152
            + +      SL++T       W 
Sbjct: 186 FV-AARYERGSLIITTNLEFSEWP 208


>gi|329910976|ref|ZP_08275423.1| AAA ATPase, central region [Oxalobacteraceae bacterium IMCC9480]
 gi|327546035|gb|EGF31112.1| AAA ATPase, central region [Oxalobacteraceae bacterium IMCC9480]
          Length = 431

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 23/176 (13%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIA--------------KSLDSILIDTRKPVL 112
           +IL GP G GK+ LA + +D   +   +  A                L    +  R  + 
Sbjct: 43  MILWGPPGVGKTTLARLMADSFAADFIALSAVLSGVKDIREAVERAQLSRGAMGRRTILF 102

Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172
           ++++   + +    F       +      + A T   S+ V    L SR   A V  +  
Sbjct: 103 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKS 155

Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226
             +D L +++ +   D    +         +V   +         ++ +   A ++
Sbjct: 156 LTEDDLGQLLDRACRDLLDGLQFADDAKTTLVASADGDGRKLLNNLEIVARAAAAK 211


>gi|330040580|ref|XP_003239961.1| Cell division control protein 48 [Cryptomonas paramecium]
 gi|327206887|gb|AEA39063.1| Cell division control protein 48 [Cryptomonas paramecium]
          Length = 658

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ +A   + +S +   +
Sbjct: 425 VLLYGPPGCGKTLIAQAAACESNANYIN 452


>gi|326525491|dbj|BAJ88792.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326527513|dbj|BAK08031.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 410

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G+GK+ LA   +  + +     +        +     ++ +
Sbjct: 190 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRD 241


>gi|326469405|gb|EGD93414.1| vacuolar sorting protein 4b [Trichophyton tonsurans CBS 112818]
          Length = 837

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ +A   + +S+ST FS  A SL S
Sbjct: 581 PARGMLLFGPPGTGKTMIARAVATESQSTFFSVSASSLAS 620


>gi|323448650|gb|EGB04546.1| hypothetical protein AURANDRAFT_55148 [Aureococcus anophagefferens]
          Length = 763

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 64  SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           SR +IL GP G+GK+ LA   ++  ++      +  L    +   +  +
Sbjct: 553 SRGIILHGPPGNGKTLLARAVANHMKARFIDVRSAELVLPYLGESESAI 601


>gi|304389726|ref|ZP_07371685.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304326902|gb|EFL94141.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 420

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +   K         A +    + +  + +LL  I   D +
Sbjct: 114 ILLLGPTGTGKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGD 171


>gi|299116091|emb|CBN74507.1| Yme1 homolog, mitochondrial inner membrane i-AAA protease
           [Ectocarpus siliculosus]
          Length = 748

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSR 89
           R ++L GP G+GK+ LA   + ++ 
Sbjct: 314 RGLMLTGPPGTGKTLLARAIAGEAG 338


>gi|325680211|ref|ZP_08159776.1| hypothetical protein CUS_5933 [Ruminococcus albus 8]
 gi|324108160|gb|EGC02411.1| hypothetical protein CUS_5933 [Ruminococcus albus 8]
          Length = 281

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 28/129 (21%)

Query: 52  AVRLIDSWP--SWPSRVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNIAK 98
           A   ++ W      +  +IL G  G+GKS  A   ++              +   +++A 
Sbjct: 110 AHSYVERWEQIKEENHGLILWGNVGTGKSYFAGCIANALMEREVSVCMTNFALILNDLAA 169

Query: 99  SLDSI-----LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY---DSSLLMTARTFPVS 150
           S          + +   ++L+D  +    +  L  + N I         L++T       
Sbjct: 170 SFKDRNEYISRLCSFPLLILDDFGMERGTEYGLEQVYNVIDSRYRCGKPLIVTT------ 223

Query: 151 WGVCLPDLC 159
             + L +L 
Sbjct: 224 -NLTLEELQ 231


>gi|289422378|ref|ZP_06424224.1| holliday junction DNA helicase RuvB [Peptostreptococcus anaerobius
           653-L]
 gi|289157213|gb|EFD05832.1| holliday junction DNA helicase RuvB [Peptostreptococcus anaerobius
           653-L]
          Length = 338

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 66/201 (32%), Gaps = 53/201 (26%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LA I +++           +++           L++ D+L  ++   
Sbjct: 57  VLLYGPPGLGKTTLAGIIANEMGVNLRITSGPAIERAGDLAAILTNLQENDVLFIDEI-- 114

Query: 127 FHIINS--------IHQYDSSLLMTARTFPVS-WGVCLPD----------------LCSR 161
            H IN           + +   ++  +        + LP                 L  R
Sbjct: 115 -HRINRSVEEVLYPAMEDNCLDIIIGKGPSARSIRLDLPKFTLIGATTRAGMLTNPLRDR 173

Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMER 207
                ++K+   +++ L +++ +  +     I  +              +A  +++R+ R
Sbjct: 174 F--GVILKLDYYNEEELAEIVKRSSSILGAGIQDEGAIQIASRSRGTPRIANRLLKRV-R 230

Query: 208 SLVFAEK--------LVDKMD 220
                           VD +D
Sbjct: 231 DFAQVRADGQITDDVAVDALD 251


>gi|282880078|ref|ZP_06288798.1| recombination factor protein RarA [Prevotella timonensis CRIS
           5C-B1]
 gi|281305951|gb|EFA97991.1| recombination factor protein RarA [Prevotella timonensis CRIS
           5C-B1]
          Length = 431

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 73/196 (37%), Gaps = 31/196 (15%)

Query: 67  VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-----------LIDTRKPVL- 112
            IL GP G GK+ LA I ++K  +     S +   +  +              T  P+L 
Sbjct: 42  FILWGPPGVGKTTLAQIVANKLETPFYTLSAVTSGVKDVRQVIERAKSNHFFQTASPILF 101

Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
           +++I     +    L        +     L+ A T   S+ V  P L SR     +  + 
Sbjct: 102 IDEIHRFSKSQQDSLL----GAVERGIVTLIGATTENPSFEVIRP-LLSR---CQLYLLK 153

Query: 172 LPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225
               + L K++ +         +R I + +  A  +++           +++ + + A +
Sbjct: 154 PLGKEDLLKLLHRAVNEDVILKNRNIELQETGA--LLRYSGGDARKLLNILELVVSAAET 211

Query: 226 RGMGITRSLAAEVLKE 241
             + +T  +  + L++
Sbjct: 212 EKVVVTDQIVEQQLQQ 227


>gi|255536338|ref|YP_003096709.1| Holliday junction DNA helicase RuvB [Flavobacteriaceae bacterium
           3519-10]
 gi|255342534|gb|ACU08647.1| Holliday junction DNA helicase RuvB [Flavobacteriaceae bacterium
           3519-10]
          Length = 346

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124
           V+L GP G GK+ LA+I +++            LD           LE+ D+L  ++ 
Sbjct: 64  VLLHGPPGLGKTTLAHIIANELGVGCKITSGPVLDKPGSLAGLLTNLEENDVLFIDEI 121


>gi|240279220|gb|EER42725.1| proteasome regulatory particle subunit Rpt4 [Ajellomyces capsulatus
           H143]
          Length = 371

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ LA   +    +     ++ ++    I     ++ E
Sbjct: 169 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIRE 220


>gi|228967474|ref|ZP_04128503.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792251|gb|EEM39824.1| hypothetical protein bthur0004_42720 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 420

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117
           +IL GP G+GK+ +A+  +  + +        ++  K ++ ++ +        ++L+++ 
Sbjct: 34  MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 93

Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173
            L     D  L H+     +     L+  T      +    +    SR     + ++   
Sbjct: 94  RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 142

Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219
            +D +   + +   D++       + I  +   +        +  A   ++         
Sbjct: 143 TEDDILIGLKRALEDKEKGLGEYAVTITDEALHHFANASGGDMRSAYNALELAVLSSFTT 202

Query: 220 -DNLALSRGMGITRSLAAEVLKE 241
            D  A      IT  +A E L++
Sbjct: 203 DDQAA-----EITLEIAEECLQK 220


>gi|256374468|ref|YP_003098128.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827]
 gi|255918771|gb|ACU34282.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827]
          Length = 743

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 59/197 (29%), Gaps = 62/197 (31%)

Query: 22  KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSWPSRV----------VIL 69
           K+K +QL    P+       D  V  A E    L  I  +   P R           V+L
Sbjct: 150 KSKAKQLSKDMPKTT---FAD--VAGAEEAVEELYEIKDFLQNPGRYQALGAKIPKGVLL 204

Query: 70  VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VLL 113
            GP G+GK+ LA   + ++    +S        + +                     + +
Sbjct: 205 YGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKQNAPCIIFV 264

Query: 114 EDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSW------- 151
           ++ID +            D  +  L  +   ++        +L+ A   P          
Sbjct: 265 DEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDSRGGIILIAATNRPDILDPALLRP 324

Query: 152 -------GVCLPDLCSR 161
                   V  PDL  R
Sbjct: 325 GRFDRQIPVSAPDLKGR 341


>gi|225464688|ref|XP_002275572.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 787

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++++ +   +
Sbjct: 510 PCRGILLFGPPGNGKTMLAKAIANEAGARFIN 541


>gi|237837369|ref|XP_002367982.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii ME49]
 gi|211965646|gb|EEB00842.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii ME49]
 gi|221509256|gb|EEE34825.1| spermatogenesis associated factor, putative [Toxoplasma gondii VEG]
          Length = 1288

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 67   VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
            ++L GP G GK+ LA   ++  ++   +     L S  +   +  L
Sbjct: 982  ILLYGPPGCGKTFLAKALANACQANFIAVKGPELLSKYVGDSEAAL 1027


>gi|255947392|ref|XP_002564463.1| Pc22g04240 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591480|emb|CAP97712.1| Pc22g04240 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 819

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ LA   + +S+ST FS  A SL S
Sbjct: 563 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 602


>gi|226506966|ref|NP_001150600.1| LOC100284233 [Zea mays]
 gi|195640484|gb|ACG39710.1| 26S protease regulatory subunit 6B [Zea mays]
 gi|224031009|gb|ACN34580.1| unknown [Zea mays]
 gi|224034215|gb|ACN36183.1| unknown [Zea mays]
          Length = 420

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G+GK+ LA   +  + +     +        +     ++ +
Sbjct: 200 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRD 251


>gi|190893295|ref|YP_001979837.1| holliday junction DNA helicase [Rhizobium etli CIAT 652]
 gi|238692541|sp|B3PYZ5|RUVB_RHIE6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|190698574|gb|ACE92659.1| holliday junction DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 346

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 92/264 (34%), Gaps = 43/264 (16%)

Query: 4   MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDD---LLVHSAIEQAVRLIDSWP 60
           M E      P+K+  D       Q           +R +    +  +        +D   
Sbjct: 1   MSEPARLISPEKRGEDLDMTLRPQ-SLDEFTGQAEARANLKVFIEAAKNRG--EALDH-- 55

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
                 V+ VGP G GK+ LA I + +      S     +            LE+ D+L 
Sbjct: 56  ------VLFVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLF 109

Query: 121 FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAA 165
            ++    H +N   +        D  L +     P +  V + DL         +RL   
Sbjct: 110 IDEI---HRLNPAVEEILYPAMEDFQLDLIIGEGPAARSVKI-DLSKFTLVAATTRLGLL 165

Query: 166 TV---------VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
           T          V++S    + LE ++ +      + + ++ A  I +R   +   A +L+
Sbjct: 166 TTPLRDRFGIPVRLSFYTVEELELIVRRGARLMNLPMTEEGAREIARRARGTPRIAGRLL 225

Query: 217 DKM-DNLALSRGMGITRSLAAEVL 239
            ++ D   ++R   +TR +A E L
Sbjct: 226 RRVRDFAEVARAEAVTREIADEAL 249


>gi|270307761|ref|YP_003329819.1| ATP-dependent metalloprotease, cell division protein
           [Dehalococcoides sp. VS]
 gi|270153653|gb|ACZ61491.1| ATP-dependent metalloprotease, cell division protein
           [Dehalococcoides sp. VS]
          Length = 499

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP G+GK+ LA   + ++    FS        + +      + +  D    N
Sbjct: 86  ILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKN 141


>gi|197118688|ref|YP_002139115.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           bemidjiensis Bem]
 gi|197088048|gb|ACH39319.1| cell division ATP-dependent zinc protease lipoprotein FtsH
           [Geobacter bemidjiensis Bem]
          Length = 599

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 40/195 (20%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP---- 110
           V+LVGP G+GK+ LA   + ++                    A  +  +    +K     
Sbjct: 183 VLLVGPPGTGKTLLARAVAGEADVPFFSISGSEFVEMYVGVGASRVRDLFAQAKKAAPCI 242

Query: 111 VLLEDIDLL-----------DFND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154
           V +++ID +             ++      QL   ++        +++ A   P      
Sbjct: 243 VFIDEIDAVGRKRDAAVGGGASDERDQTLNQLLVEMDGFAVNSGIVVLAATNRPEILDAA 302

Query: 155 LPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213
           L  L S R      V +  PD    E ++     +  + +  ++   ++ R    +  A 
Sbjct: 303 L--LRSGRFD--REVTVGAPDIRGREAILKVHSKN--VPLSPEVDLMVIARGTPGMSGA- 355

Query: 214 KLVDKMDNLALSRGM 228
            L + ++  A+    
Sbjct: 356 DLANVVNEAAILAAR 370


>gi|153005127|ref|YP_001379452.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028700|gb|ABS26468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Anaeromyxobacter sp. Fw109-5]
          Length = 426

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 9/62 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L+GP+GSGK+ LA   +      RF N+  ++      T    + ED++ +  N   L
Sbjct: 123 ILLIGPTGSGKTLLAQSLA------RFLNVPFTIADATSLTEAGYVGEDVENIIQN---L 173

Query: 127 FH 128
            H
Sbjct: 174 LH 175


>gi|119597249|gb|EAW76843.1| peroxisome biogenesis factor 1, isoform CRA_d [Homo sapiens]
          Length = 549

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           ++L GP G+GK+ LA + + +SR    S     L S  I   +  + +
Sbjct: 171 ILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRD 218


>gi|21064189|gb|AAM29324.1| AT28212p [Drosophila melanogaster]
          Length = 270

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G GK+ LA   +  + ++    +        +     ++ +
Sbjct: 138 PPRGVLLFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRD 189


>gi|326483075|gb|EGE07085.1| hypothetical protein TEQG_06074 [Trichophyton equinum CBS 127.97]
          Length = 836

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ +A   + +S+ST FS  A SL S
Sbjct: 580 PARGMLLFGPPGTGKTMIARAVATESQSTFFSVSASSLAS 619


>gi|317507802|ref|ZP_07965504.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253921|gb|EFV13289.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC
           BAA-974]
          Length = 694

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 75/256 (29%), Gaps = 64/256 (25%)

Query: 22  KNKEEQLFFSFP---RCLGISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68
           K++ +QL    P          D          D L + A  QA+           R V+
Sbjct: 154 KSRAKQLSKDVPKVTFADVAGADEAVEELYEIKDFLQNPARYQALGAK------IPRGVL 207

Query: 69  LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112
           L GP G+GK+ LA   + ++    F+        + +                     + 
Sbjct: 208 LFGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQSSPCIIF 267

Query: 113 LEDIDLLDFNDTQLF--------HIINSIH-------QYDSSLLMTARTFPVSWGVCLPD 157
           +++ID +       F          +N +        +    ++M A   P      L  
Sbjct: 268 VDEIDAVGRQRGAGFGGGHDEREQTLNQLLVEMDGFSERQGVIVMAATNRPDILDPAL-- 325

Query: 158 LCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR-MERSLVFAE 213
               L+       + +  PD      ++      + I  D  L   + +R +  S     
Sbjct: 326 ----LRPGRFDRQIPVGNPDLAGRRAILGVHAKGKPIAPDADL-EGLAKRTVGMSGADLA 380

Query: 214 KLVDKMDNLALSRGMG 229
            +   ++  AL     
Sbjct: 381 NV---LNEAALLTARE 393


>gi|255728607|ref|XP_002549229.1| multidrug resistance protein CDR2 [Candida tropicalis MYA-3404]
 gi|240133545|gb|EER33101.1| multidrug resistance protein CDR2 [Candida tropicalis MYA-3404]
          Length = 1479

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 31  SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90
                + I R+D ++       +  +D W   P ++ +L+G SG+GK+ L N  S++  +
Sbjct: 842 DLTYQVKIKREDRVI-------LDHVDGWVK-PGQITVLMGASGAGKTTLLNCLSNRVTT 893

Query: 91  TRFSNIAKSLDSILIDTR 108
              +   + ++   +D+ 
Sbjct: 894 GVITAGVRMVNGHELDSS 911


>gi|257066688|ref|YP_003152944.1| AAA ATPase central domain-containing protein [Anaerococcus prevotii
           DSM 20548]
 gi|256798568|gb|ACV29223.1| AAA ATPase central domain protein [Anaerococcus prevotii DSM 20548]
          Length = 428

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 15/143 (10%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           +I  GP G GK+ LA I S K+    F  I+     I    +K  + +D    +   T L
Sbjct: 55  MIFYGPPGVGKTSLAKIISQKTN-MAFEEISAVASGISDLKKKVQIAKDNLSFENKKTIL 113

Query: 127 F----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175
           F    H  N   Q        DS+L++   T    +      L SR+    V ++    D
Sbjct: 114 FIDEIHRFNKSQQDYLLPYVEDSTLILIGATTENPYFEVNKALISRMY---VFELKSLSD 170

Query: 176 DFLEKVIVKMFADRQIFIDKKLA 198
             L ++I    +  +I   K + 
Sbjct: 171 RDLSRLIDLALSKDEILKTKDII 193


>gi|225174439|ref|ZP_03728438.1| ABC transporter related protein [Dethiobacter alkaliphilus AHT 1]
 gi|225170224|gb|EEG79019.1| ABC transporter related protein [Dethiobacter alkaliphilus AHT 1]
          Length = 240

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 21/74 (28%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P  VV ++GPSGSGK+ L                   L+ + + T   ++++DI++   +
Sbjct: 26  PQEVVCVIGPSGSGKTTLLRC----------------LNLLEVPTEGKIVVDDIEVTAPD 69

Query: 123 DTQLFHIINSIHQY 136
                  IN + Q 
Sbjct: 70  VN-----INKVRQN 78


>gi|237840985|ref|XP_002369790.1| N-ethylmaleimide-sensitive factor [Toxoplasma gondii ME49]
 gi|211967454|gb|EEB02650.1| N-ethylmaleimide-sensitive factor [Toxoplasma gondii ME49]
 gi|221483700|gb|EEE22012.1| N-ethylmaleimide-sensitive factor, putative [Toxoplasma gondii GT1]
 gi|221504279|gb|EEE29954.1| N-ethylmaleimide-sensitive factor, putative [Toxoplasma gondii VEG]
          Length = 751

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 17/70 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-----------------STRFSNIAKSLDSILIDTRK 109
           ++L GP GSGK+ LA   + +++                 + R ++++++ D        
Sbjct: 538 ILLHGPPGSGKTALAAHVAKEAQFPFMKLVTPDNFVGFSEAARTNSLSRTFDDAYKSPLS 597

Query: 110 PVLLEDIDLL 119
            +++++I+ L
Sbjct: 598 LLMIDNIERL 607


>gi|169235453|ref|YP_001688653.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
 gi|167726519|emb|CAP13304.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
          Length = 406

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 27/64 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ +A   + ++ ++        L    I     ++ +   +   +
Sbjct: 181 PPSGVLLHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDH 240

Query: 123 DTQL 126
           +  +
Sbjct: 241 EPAV 244


>gi|170744850|ref|YP_001773505.1| AAA family ATPase, CDC48 subfamily protein [Methylobacterium sp.
           4-46]
 gi|168199124|gb|ACA21071.1| AAA family ATPase, CDC48 subfamily [Methylobacterium sp. 4-46]
          Length = 757

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P + V+L GP G+GK+ LA   ++++ +  F 
Sbjct: 237 PPKGVLLYGPPGTGKTLLARAVANETEAQFFH 268



 Score = 35.9 bits (82), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           P++  +L GP G+GK+ LA   + ++ +   +  +  L
Sbjct: 509 PAKGFLLFGPPGTGKTLLAKAVAREASANFVATKSSDL 546


>gi|148263481|ref|YP_001230187.1| Holliday junction DNA helicase RuvB [Geobacter uraniireducens Rf4]
 gi|189046034|sp|A5G9Y2|RUVB_GEOUR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB
 gi|146396981|gb|ABQ25614.1| Holliday junction DNA helicase subunit RuvB [Geobacter
           uraniireducens Rf4]
          Length = 338

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 27/189 (14%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           V+L GP G GK+ LANI + +      S     ++           LE  D+L  ++   
Sbjct: 55  VLLYGPPGLGKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEAHDVLFIDEI-- 112

Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF-----LEKV 181
            H ++ + +    +L      P      L  +  +  +A  +K+ LP            +
Sbjct: 113 -HRLSHVVEE---ILY-----PAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGL 163

Query: 182 IVKMFADRQIFID------KKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSL 234
           +     DR   I        +  A+I+ R  R L    K     D  A ++R    T  +
Sbjct: 164 LSSPLRDRFGVISRLEFYTDEELAFIITRSARILGMEIKT----DGAAEMARRSRGTPRI 219

Query: 235 AAEVLKETQ 243
           A  +L+  +
Sbjct: 220 ANRLLRRVR 228


>gi|116062107|dbj|BAF34686.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine
           protease [Aeromonas veronii]
          Length = 424

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 22/125 (17%)

Query: 9   SFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRLIDSWPSW 62
           +  + ++ +   PK    +L    P  +    DD ++                     + 
Sbjct: 45  NDIIREEIREISPKRDGSELP--TPHEIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRTG 102

Query: 63  PSR--------VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
                       ++L+GP+GSGK+ LA   +      R  ++  ++      T    + E
Sbjct: 103 SESGGVELGKSNILLIGPTGSGKTLLAETLA------RLLDVPFTMADATTLTEAGYVGE 156

Query: 115 DIDLL 119
           D++ +
Sbjct: 157 DVENI 161


>gi|23598425|gb|AAN35121.1| N-ethylmaleimide-sensitive factor [Toxoplasma gondii]
          Length = 751

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 17/70 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR-----------------STRFSNIAKSLDSILIDTRK 109
           ++L GP GSGK+ LA   + +++                 + R ++++++ D        
Sbjct: 538 ILLHGPPGSGKTALAAHVAKEAQFPFMKLVTPDNFVGFSEAARTNSLSRTFDDAYKSPLS 597

Query: 110 PVLLEDIDLL 119
            +++++I+ L
Sbjct: 598 LLMIDNIERL 607


>gi|77918603|ref|YP_356418.1| ATP-dependent zinc protease/ cell division protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77544686|gb|ABA88248.1| membrane protease FtsH catalytic subunit [Pelobacter carbinolicus
           DSM 2380]
          Length = 616

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 43/197 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ L    + ++    FS        + +                     
Sbjct: 189 VLLVGPPGTGKTLLGRAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFMQGKKNAPCI 248

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155
           + +++ID +            D  +  L  +   ++     +  +L+ A   P      L
Sbjct: 249 IFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPAL 308

Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212
                 L+       V +  PD      ++      R++ +D  +   +V +       A
Sbjct: 309 ------LRPGRFDRQVVVPRPDIKGRAMILDVHA--RKVPLDDDVNLDVVAKSTPGFSGA 360

Query: 213 EKLVDKMDNLALSRGMG 229
             L + ++  AL     
Sbjct: 361 -DLANLINEAALLAARR 376


>gi|15789738|ref|NP_279562.1| proteasome-activating nucleotidase [Halobacterium sp. NRC-1]
 gi|10580114|gb|AAG19042.1| ATP-dependent 26S proteinase regulatory subunit 4 homolog
           [Halobacterium sp. NRC-1]
          Length = 368

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 27/64 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ +A   + ++ ++        L    I     ++ +   +   +
Sbjct: 143 PPSGVLLHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDH 202

Query: 123 DTQL 126
           +  +
Sbjct: 203 EPAV 206


>gi|21362836|sp|Q9HRW6|PAN1_HALSA RecName: Full=Proteasome-activating nucleotidase 1; Short=PAN 1;
           AltName: Full=Proteasomal ATPase 1; AltName:
           Full=Proteasome regulatory ATPase 1; AltName:
           Full=Proteasome regulatory particle 1
          Length = 407

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 27/64 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           P   V+L GP G+GK+ +A   + ++ ++        L    I     ++ +   +   +
Sbjct: 182 PPSGVLLHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDH 241

Query: 123 DTQL 126
           +  +
Sbjct: 242 EPAV 245


>gi|110634002|ref|YP_674210.1| recombination factor protein RarA [Mesorhizobium sp. BNC1]
 gi|110284986|gb|ABG63045.1| Recombination protein MgsA [Chelativorans sp. BNC1]
          Length = 440

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 40/202 (19%)

Query: 60  PSWPSRVVILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPVLLEDID 117
            S     ++  GP G+GK+ +A + + ++     + S I   +  +            + 
Sbjct: 50  RSGSLGSLVFWGPPGTGKTTVARLLAGETSMAFEQISAIFSGVADLKKVFEAA----RLR 105

Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163
                 T LF    H  N           +  + +L+  T              L SR  
Sbjct: 106 RSQGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAA---LLSR-- 160

Query: 164 AATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-- 219
            A V+     + + LE ++ +      R++ + ++  A +++  +        L +++  
Sbjct: 161 -ARVLVFHSLEANSLENLLQRAEEAEGRKLPLTEEARAVLLRMADGDGRAVLTLAEEVWR 219

Query: 220 --------DNLALSRGMGITRS 233
                   D  AL     + R 
Sbjct: 220 AANEGEVFDAEALQ--RIVQRP 239


>gi|46110102|ref|XP_382109.1| hypothetical protein FG01933.1 [Gibberella zeae PH-1]
          Length = 395

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           PS V+ L GP G GK+ LA   + +S ++  +
Sbjct: 147 PSGVL-LYGPPGCGKTMLAKAVAHESGASFIN 177


>gi|328792984|ref|XP_623743.2| PREDICTED: 26S protease regulatory subunit 7 [Apis mellifera]
          Length = 409

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109
           P + V+L GP G+GK+  A   ++++ +     I   L    +                 
Sbjct: 184 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 243

Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147
               +  ++ID +                  +  +IN +     + +  +LM        
Sbjct: 244 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 303

Query: 148 ------PVSW----GVCLPDLCSR 161
                 P          LPDL  R
Sbjct: 304 DPALMRPGRLDRKVEFGLPDLEGR 327


>gi|326526797|dbj|BAK00787.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 854

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
           P R ++L GP G+GK+ LA   ++ + ++  +
Sbjct: 535 PCRGILLFGPPGTGKTMLAKAIANDAGASFIN 566


>gi|322819661|gb|EFZ26688.1| hypothetical protein TCSYLVIO_7124 [Trypanosoma cruzi]
          Length = 339

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           V+L GP G+GK+ LA   + +   +  +   +SL
Sbjct: 125 VLLYGPPGTGKTLLARALAKELGCSFINVKTESL 158


>gi|320590331|gb|EFX02774.1| ribosome biogenesis protein [Grosmannia clavigera kw1407]
          Length = 1183

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 53  VRLIDSWPSWPSRVVI-LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111
           V L+D  P  P   ++ +VGP G GK+ L      +       +    +  +    ++  
Sbjct: 51  VPLVDRLPDEPPPRLVTIVGPPGVGKTTLLRSLIRRYAKETIIDPQGPITVVTSKKQRLT 110

Query: 112 LLE 114
            LE
Sbjct: 111 FLE 113


>gi|317970009|ref|ZP_07971399.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. CB0205]
          Length = 645

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 71/217 (32%), Gaps = 54/217 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
           V+LVGP G+GK+ LA   + ++    FS        + +                     
Sbjct: 218 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCL 277

Query: 111 VLLEDIDLLDFN------------DTQLFHII------------------NSIHQYDSSL 140
           + +++ID +               +  L  ++                  N     DS+L
Sbjct: 278 IFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRADVLDSAL 337

Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKI---SLPDDDFLEKVIVKMFADRQIFIDKKL 197
           L   R       V +PD+  RL A   V      L DD  LE +  +        +   L
Sbjct: 338 LRPGRFD-RQVQVDVPDIKGRL-AVLNVHCRDKKLADDVSLEAIARRTPGFSGADLANLL 395

Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGIT 231
             AA +  R  +      ++ D +D  +A   G  +T
Sbjct: 396 NEAAILTARRRKEATGLAEIDDAVDRIIAGMEGKPLT 432


>gi|315657030|ref|ZP_07909915.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492422|gb|EFU82028.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 420

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 67  VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
           ++L+GP+G+GK+ LA   +   K         A +    + +  + +LL  I   D +
Sbjct: 114 ILLLGPTGTGKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGD 171


>gi|307293595|ref|ZP_07573439.1| putative ATPase [Sphingobium chlorophenolicum L-1]
 gi|306879746|gb|EFN10963.1| putative ATPase [Sphingobium chlorophenolicum L-1]
          Length = 490

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 47  SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--L 104
            +   AV L+D      +R+++  G SGSGKS L     ++S +     +         L
Sbjct: 16  DSNGNAV-LVDVEELLATRLLV-QGNSGSGKSHLLRRLLEESAALVQQVVIDPEGDFVTL 73

Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143
            D    V++   D  D+N+ ++  +   I ++ +S++++
Sbjct: 74  ADEYGHVVI---DAGDYNEREIVKMAARIREHRASVVLS 109


>gi|302667476|ref|XP_003025321.1| hypothetical protein TRV_00501 [Trichophyton verrucosum HKI 0517]
 gi|291189426|gb|EFE44710.1| hypothetical protein TRV_00501 [Trichophyton verrucosum HKI 0517]
          Length = 834

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102
           P+R ++L GP G+GK+ +A   + +S+ST FS  A SL S
Sbjct: 578 PARGMLLFGPPGTGKTMIARAVATESQSTFFSVSASSLAS 617


>gi|261840091|gb|ACX99856.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Helicobacter
           pylori 52]
          Length = 312

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 15/124 (12%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL-DSILIDTRKPVLLED------ 115
           P +++ L+GPSGSGKS L+   + +  +  FS  + S+   I I + K  L E       
Sbjct: 12  PKKLIALLGPSGSGKSALSIELAQELDAEIFSLDSLSIYKDINIASAKLSLKERKNIKHY 71

Query: 116 -IDLLDFND---TQLFH--IINSIHQYDSSLLMTARTFPVSWGVCLPDLCS--RLKAATV 167
            +D L+ ++     LF   + +++      +L+            L  L S  R+    V
Sbjct: 72  ALDYLNIDEKNNASLFKTLLEDAMRVSSKEILLIVGGSSFYLKSILEGLSSMPRISGEEV 131

Query: 168 VKIS 171
           VKI 
Sbjct: 132 VKIE 135


>gi|262051757|ref|ZP_06023975.1| hypothetical protein SA930_1840 [Staphylococcus aureus 930918-3]
 gi|259160368|gb|EEW45394.1| hypothetical protein SA930_1840 [Staphylococcus aureus 930918-3]
          Length = 557

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 16/72 (22%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            + +VGPSGSGKS L  I                +  +       V  E++D+ + +D  
Sbjct: 359 KIAIVGPSGSGKSTLLQI----------------MAGLYQLDSGSVRFENMDMFEIDDKD 402

Query: 126 LFHIINSIHQYD 137
            F  +N + Q  
Sbjct: 403 KFESLNVLLQSQ 414


>gi|312112547|ref|YP_003990863.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
 gi|311217648|gb|ADP76252.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1]
          Length = 240

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 67  VILVGPSGSGKSCLANIW----SDKSRSTRFSNIAKSLDSILIDTRKPVL------LEDI 116
           ++L G  G+GK+ LA        ++ +S +F  IA  ++ ++       L      LE I
Sbjct: 96  LVLYGGVGTGKTHLATAIGVEACNQGKSVKFYRIAALVNELIEAKNTGKLHKMMNQLEKI 155

Query: 117 DLLDFND 123
           DLL  ++
Sbjct: 156 DLLICDE 162


>gi|295658273|ref|XP_002789698.1| ATPase family AAA domain-containing protein 1-B [Paracoccidioides
           brasiliensis Pb01]
 gi|226283107|gb|EEH38673.1| ATPase family AAA domain-containing protein 1-B [Paracoccidioides
           brasiliensis Pb01]
          Length = 430

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94
           V+L GP G GK+ LA   + +S +   +
Sbjct: 148 VLLYGPPGCGKTMLAKALAHESGACFIN 175


>gi|291456790|ref|ZP_06596180.1| holliday junction DNA helicase RuvB [Bifidobacterium breve DSM
           20213]
 gi|291382067|gb|EFE89585.1| holliday junction DNA helicase RuvB [Bifidobacterium breve DSM
           20213]
          Length = 354

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 30/181 (16%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P   ++L GP G GK+ LA I +++        S          +     +DT + + ++
Sbjct: 68  PPDHILLAGPPGLGKTTLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDTGEVLFID 127

Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD---------------- 157
           +I  L     +L +I     +     +M  +     S  + LP                 
Sbjct: 128 EIHRLPRAAEELLYI---AMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSP 184

Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217
           L +R      +     ++  LEK+I +  +   + +D+  A  +  R   +   A +L+ 
Sbjct: 185 LRARFGFTAHLDFYPHEE--LEKLIERSASVLGVNLDEGSAHELALRSRGTPRIANRLLR 242

Query: 218 K 218
           +
Sbjct: 243 R 243


>gi|223994295|ref|XP_002286831.1| 26S proteasome ATPase regulatory subunit 4 [Thalassiosira
           pseudonana CCMP1335]
 gi|220978146|gb|EED96472.1| 26S proteasome ATPase regulatory subunit 4 [Thalassiosira
           pseudonana CCMP1335]
          Length = 441

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + VIL G  G+GK+ LA   ++ + +T    +   L    +     ++ E
Sbjct: 219 PPKGVILYGEPGTGKTLLAKAVANHTSATFLRVVGSELIQKYLGDGPKLVRE 270


>gi|218462461|ref|ZP_03502552.1| Holliday junction DNA helicase RuvB [Rhizobium etli Kim 5]
          Length = 346

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 92/264 (34%), Gaps = 43/264 (16%)

Query: 4   MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDD---LLVHSAIEQAVRLIDSWP 60
           M E      P+K+  D       Q           +R +    +  +        +D   
Sbjct: 1   MSEPARLISPEKRGEDLDVTLRPQ-SLDEFTGQAEARANLKIFIEAAKNRG--EALDH-- 55

Query: 61  SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
                 V+ VGP G GK+ LA I + +      S     +            LE+ D+L 
Sbjct: 56  ------VLFVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLF 109

Query: 121 FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAA 165
            ++    H +N   +        D  L +     P +  V + DL         +RL   
Sbjct: 110 IDEI---HRLNPAVEEILYPAMEDFQLDLIIGEGPAARSVKI-DLSKFTLVAATTRLGLL 165

Query: 166 TV---------VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216
           T          V++S    + LE ++ +      + I ++ A  I +R   +   A +L+
Sbjct: 166 TTPLRDRFGIPVRLSFYTVEELELIVRRGARLMNLPITEEGAREIARRARGTPRIAGRLL 225

Query: 217 DKM-DNLALSRGMGITRSLAAEVL 239
            ++ D   ++R   +TR +A E L
Sbjct: 226 RRVRDFAEVARAEAVTREIADEAL 249


>gi|238595924|ref|XP_002393911.1| hypothetical protein MPER_06282 [Moniliophthora perniciosa FA553]
 gi|215462085|gb|EEB94841.1| hypothetical protein MPER_06282 [Moniliophthora perniciosa FA553]
          Length = 517

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 54 RLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95
          RL+D+   W  P ++  L+G SG+GK+ L ++ + ++ +   S 
Sbjct: 43 RLLDNVDGWVEPGKLTALMGASGAGKTTLLDVLASRATTGVISG 86


>gi|168013202|ref|XP_001759290.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689603|gb|EDQ75974.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 412

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P R V+L GP G+GK+ LA   +  + +     +        +     ++ +
Sbjct: 192 PPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRD 243


>gi|163758800|ref|ZP_02165887.1| Holliday junction DNA helicase RuvB [Hoeflea phototrophica DFL-43]
 gi|162284090|gb|EDQ34374.1| Holliday junction DNA helicase RuvB [Hoeflea phototrophica DFL-43]
          Length = 345

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 41/257 (15%)

Query: 10  FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDL--LVHSAIEQAVRLIDSWPSWPSRVV 67
              PDK+  D       Q           +R +L   + +A  +A  L           V
Sbjct: 7   LISPDKRGEDVDSTLRPQ-SLDEFTGQAEARANLKVFIEAAKGRAEAL---------DHV 56

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127
           + VGP G GK+ LA I + +      S     +            LED D+L  ++    
Sbjct: 57  LFVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEDRDVLFIDEI--- 113

Query: 128 HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAATV----- 167
           H +N   +        D  L +     P +  V + DL         +RL   T      
Sbjct: 114 HRLNPAVEEILYPAMEDFQLDLIIGEGPAARSVKI-DLSRFTLVAATTRLGLLTTPLRDR 172

Query: 168 ----VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222
               V++     + LE ++ +      + +    A  I +R   +   A +L+ ++ D  
Sbjct: 173 FGIPVRLQFYTVEELELIVRRGARIMGLGMTDDGALEIARRARGTPRIAGRLLRRVRDFA 232

Query: 223 ALSRGMGITRSLAAEVL 239
            +++   +T+ +A E L
Sbjct: 233 EVAKAEAVTQKIADEAL 249


>gi|154499606|ref|ZP_02037644.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC
           29799]
 gi|150271684|gb|EDM98928.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC
           29799]
          Length = 665

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++LVGP G+GK+ LA   + ++     S        + +      + +  D    N   +
Sbjct: 206 ILLVGPPGTGKTLLAKAVAGEAGVHFLSISGSDFVELYVGVGASRVRDLFDQAKKNSPAI 265


>gi|94264492|ref|ZP_01288279.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
 gi|93455051|gb|EAT05278.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1]
          Length = 419

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126
           ++L+GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +       
Sbjct: 115 ILLIGPTGSGKTLLAQTLA------RILNVPFTIADATTLTEAGYVGEDVENI------- 161

Query: 127 FHIINSIHQYD 137
             ++N +   D
Sbjct: 162 --LVNLMQAAD 170


>gi|89053470|ref|YP_508921.1| FtsH peptidase [Jannaschia sp. CCS1]
 gi|88863019|gb|ABD53896.1| membrane protease FtsH catalytic subunit [Jannaschia sp. CCS1]
          Length = 641

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 66/206 (32%), Gaps = 48/206 (23%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110
            +LVGP G+GK+ LA   + ++    F+        + +                     
Sbjct: 194 ALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 253

Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTF-----PVS 150
           + +++ID +            D  +  L  +   ++     +  +++ A        P  
Sbjct: 254 LFIDEIDAVGRARGAGYGGGNDEREQTLNQLLVEMDGFEANEGIIIIAATNRRDVLDPAL 313

Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
                 D          V +  PD    E+++      R++ +   +   I+ R      
Sbjct: 314 LRPGRFD--------RQVTVPNPDIKGRERILGVHA--RKVPLGPDVDLRIIARGTPGFS 363

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAA 236
            A  L + ++  AL+    + R   A
Sbjct: 364 GA-DLANLVNEAALTAAR-VGRRFVA 387


>gi|161521277|ref|YP_001584704.1| IstB ATP binding domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|161522684|ref|YP_001585613.1| IstB ATP binding domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|161525681|ref|YP_001580693.1| IstB ATP binding domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189348459|ref|YP_001941655.1| ISBmu1a transposase [Burkholderia multivorans ATCC 17616]
 gi|189349595|ref|YP_001945223.1| ISBmu1a transposase [Burkholderia multivorans ATCC 17616]
 gi|189352551|ref|YP_001948178.1| ISBmu1b transposase [Burkholderia multivorans ATCC 17616]
 gi|55847598|dbj|BAD72780.1| insertion sequence associated putative ATP-binding protein
           [Burkholderia multivorans ATCC 17616]
 gi|160343110|gb|ABX16196.1| IstB domain protein ATP-binding protein [Burkholderia multivorans
           ATCC 17616]
 gi|160345327|gb|ABX18412.1| IstB domain protein ATP-binding protein [Burkholderia multivorans
           ATCC 17616]
 gi|160346237|gb|ABX19321.1| IstB domain protein ATP-binding protein [Burkholderia multivorans
           ATCC 17616]
 gi|189333617|dbj|BAG42687.1| ISBmu1a transposase [Burkholderia multivorans ATCC 17616]
 gi|189336573|dbj|BAG45642.1| ISBmu1b transposase [Burkholderia multivorans ATCC 17616]
 gi|189338597|dbj|BAG47665.1| ISBmu1a transposase [Burkholderia multivorans ATCC 17616]
          Length = 262

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 20/111 (18%)

Query: 67  VILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRK-------------- 109
           +++ GP+G+GKS LA      + +            L   L   R               
Sbjct: 103 ILIAGPTGTGKSHLAQALGHCAARQGRDVLFISQTELLKRLNAARATGAYDRKFQQYARV 162

Query: 110 -PVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157
             ++++D  L        + FH + +     ++ ++T+      WG   PD
Sbjct: 163 PLLIVDDFALKPLRTPQDEDFHDLVAARYEHAATILTSNLDFGEWGAAFPD 213


>gi|2492515|sp|Q39444|FTSH_CAPAN RecName: Full=ATP-dependent zinc metalloprotease FTSH,
           chloroplastic; Flags: Precursor
 gi|929013|emb|CAA62084.1| ATPase [Capsicum annuum]
          Length = 662

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 68  ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112
           +LVGP G+GK+ LA   + ++    FS  A     + +      +
Sbjct: 267 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRV 311


>gi|114566784|ref|YP_753938.1| vesicle-fusing ATPase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337719|gb|ABI68567.1| Vesicle-fusing ATPase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 493

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95
           P + ++LVGP G+GK+ LA   +  + S   + 
Sbjct: 96  PIKGILLVGPPGTGKTLLARAAASFTSSVFIAA 128


>gi|71423868|ref|XP_812600.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70877400|gb|EAN90749.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 339

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           V+L GP G+GK+ LA   + +   +  +   +SL
Sbjct: 125 VLLYGPPGTGKTLLARALAKELGCSFINVKTESL 158


>gi|71425219|ref|XP_813049.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70877898|gb|EAN91198.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 339

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
           V+L GP G+GK+ LA   + +   +  +   +SL
Sbjct: 125 VLLYGPPGTGKTLLARALAKELGCSFINVKTESL 158


>gi|332661901|ref|YP_004451370.1| serine/threonine protein kinase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332337398|gb|AEE54497.1| serine/threonine protein kinase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 604

 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 67  VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105
           ++L GP G GK+  A  +++++       ++  L SI +
Sbjct: 366 MLLYGPPGCGKTFFAEKFAEEAGYNFIKIVSSDLASIYV 404


>gi|329313408|gb|AEB87821.1| ABC transporter, ATP-binding MsbA family protein [Staphylococcus
           aureus subsp. aureus T0131]
          Length = 557

 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 16/72 (22%)

Query: 66  VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125
            + +VGPSGSGKS L  I                +  +       V  E++D+ + +D  
Sbjct: 359 KIAIVGPSGSGKSTLLQI----------------MAGLYQLDSGSVRFENMDMFEIDDKD 402

Query: 126 LFHIINSIHQYD 137
            F  +N + Q  
Sbjct: 403 KFESLNVLLQSQ 414


>gi|326693800|ref|ZP_08230805.1| ATP-dependent protease ATP-binding subunit ClpX [Leuconostoc
           argentinum KCTC 3773]
          Length = 415

 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 25/109 (22%)

Query: 28  LFFSFPRCLGISRDDLLVH-----SAIEQAV-----RLIDSWPSWPS-------RVVILV 70
           L    P  +    +D ++        +  AV     R+ + +   P+         + L+
Sbjct: 60  LSLPTPHEIVAQLNDYVIGQEDAKKTLAVAVYNHYKRINEHFA--PTTDVELQKSNIALI 117

Query: 71  GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119
           GP+GSGK+ LA   +      R  N+  ++      T    + ED++ +
Sbjct: 118 GPTGSGKTYLAQSLA------RILNVPFAIADATTLTEAGYVGEDVENI 160


>gi|315656174|ref|ZP_07909065.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493176|gb|EFU82776.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 759

 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 63/205 (30%), Gaps = 51/205 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 223 VLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEMFVGMGASRVRDLFEQARAAAPAI 282

Query: 111 VLLEDIDLL------------DFNDTQLFHII------------------NSIHQYDSSL 140
           + +++ID +            D  +  L  ++                  N     D +L
Sbjct: 283 IFVDEIDAVGRHRGTGLGGGHDEREQTLNQLLVEMDGFDERTNVIMIAATNRADVLDPAL 342

Query: 141 LMTARTFPVSWGVCLPDLCSRLK-AATVVKISLPD-DDFLEKVIVKMFADRQIFIDKKL- 197
           L   R       V  PDL  R    A   K    D +  ++ +  +        +   L 
Sbjct: 343 LRPGRFD-RQVAVEAPDLKGREAILAVHAKNKPLDPETDIKSLAKRSPGFTGADLANVLN 401

Query: 198 -AAYIVQRMERSLVFAEKLVDKMDN 221
            AA +  R  R  + A+ L + +D 
Sbjct: 402 EAALLAARHSRETITAQDLDEAVDR 426


>gi|315655900|ref|ZP_07908798.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333]
 gi|315489964|gb|EFU79591.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333]
          Length = 759

 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 63/205 (30%), Gaps = 51/205 (24%)

Query: 67  VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110
           V+L GP G+GK+ LA   + ++                     S +    +         
Sbjct: 223 VLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEMFVGMGASRVRDLFEQARAAAPAI 282

Query: 111 VLLEDIDLL------------DFNDTQLFHII------------------NSIHQYDSSL 140
           + +++ID +            D  +  L  ++                  N     D +L
Sbjct: 283 IFVDEIDAVGRHRGTGLGGGHDEREQTLNQLLVEMDGFDERTNVIMIAATNRADVLDPAL 342

Query: 141 LMTARTFPVSWGVCLPDLCSRLK-AATVVKISLPD-DDFLEKVIVKMFADRQIFIDKKL- 197
           L   R       V  PDL  R    A   K    D +  ++ +  +        +   L 
Sbjct: 343 LRPGRFD-RQVAVEAPDLKGREAILAVHAKNKPLDPETDIKSLAKRSPGFTGADLANVLN 401

Query: 198 -AAYIVQRMERSLVFAEKLVDKMDN 221
            AA +  R  R  + A+ L + +D 
Sbjct: 402 EAALLAARHSRETITAQDLDEAVDR 426


>gi|310642516|ref|YP_003947274.1| vesicle-fusing atpase [Paenibacillus polymyxa SC2]
 gi|309247466|gb|ADO57033.1| Vesicle-fusing ATPase [Paenibacillus polymyxa SC2]
          Length = 500

 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 63  PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114
           P + V+L GP G+GK+ +A   +  + S   +        + +      + E
Sbjct: 103 PLKGVLLTGPPGTGKTLMAKAAAHYTNSVFVAASGSEFVEMYVGVGAGRVRE 154


>gi|296118973|ref|ZP_06837546.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306]
 gi|295968071|gb|EFG81323.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306]
          Length = 853

 Score = 37.8 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 43/212 (20%)

Query: 65  RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110
           R V+L GP G+GK+ LA   + ++    +S        + +                   
Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSP 260

Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153
             + +++ID +               +  L  +   ++     +  +L+ A   P     
Sbjct: 261 CIIFVDEIDAVGRQRGSGTGGGHDEREQTLNQLLVEMDGFGDREGVILIAATNRPDILDP 320

Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210
            L      L+       + ++ PD    E+++     ++ +  D  +   + +R    + 
Sbjct: 321 AL------LRPGRFDRQIPVTPPDLAGREQILRVHSKNKPLAKDVDVTQ-LAKRTA-GMS 372

Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242
            A  L + ++  AL         + A+ L+E 
Sbjct: 373 GA-DLANVLNEAALLTARIGGNVITADALEEA 403


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.165    0.522 

Lambda     K      H
   0.267   0.0505    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,407,884,700
Number of Sequences: 14124377
Number of extensions: 256839804
Number of successful extensions: 1351076
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 10671
Number of HSP's successfully gapped in prelim test: 8481
Number of HSP's that attempted gapping in prelim test: 1330464
Number of HSP's gapped (non-prelim): 22687
length of query: 246
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 111
effective length of database: 2,936,002,735
effective search space: 325896303585
effective search space used: 325896303585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 80 (35.1 bits)